Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr08 ID=Chr08-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 57128820
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 677448 characters in sequence are not A, C, G, or T
File 25 of 190
Found at i:7073212 original size:11 final size:11
Alignment explanation
Indices: 7073196--7073256 Score: 68
Period size: 11 Copynumber: 5.3 Consensus size: 11
7073186 GAAGAAGAAG
7073196 AAAAAGAAAGA
1 AAAAAGAAAGA
*
7073207 AAAAAGAAGGA
1 AAAAAGAAAGA
*
7073218 GAAAAAGAGAGA
1 -AAAAAGAAAGA
7073230 AAAAAGGAAAGAA
1 AAAAA-GAAAG-A
*
7073243 AAAAAAAAAGA
1 AAAAAGAAAGA
7073254 AAA
1 AAA
7073257 TCTACAGTCG
Statistics
Matches: 42, Mismatches: 5, Indels: 6
0.79 0.09 0.11
Matches are distributed among these distances:
11 19 0.45
12 17 0.40
13 6 0.14
ACGTcount: A:0.79, C:0.00, G:0.21, T:0.00
Consensus pattern (11 bp):
AAAAAGAAAGA
Found at i:7073220 original size:23 final size:23
Alignment explanation
Indices: 7073187--7073256 Score: 86
Period size: 23 Copynumber: 3.0 Consensus size: 23
7073177 TGACCCGAAG
*
7073187 AAGAAGAAGAAAAAGAAAGAAAA
1 AAGAAGGAGAAAAAGAAAGAAAA
*
7073210 AAGAAGGAGAAAAAGAGAGAAAA
1 AAGAAGGAGAAAAAGAAAGAAAA
* * *
7073233 AAGGAAAGAAAAAAAAAAAGAAAA
1 AA-GAAGGAGAAAAAGAAAGAAAA
7073257 TCTACAGTCG
Statistics
Matches: 40, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
23 23 0.57
24 17 0.43
ACGTcount: A:0.77, C:0.00, G:0.23, T:0.00
Consensus pattern (23 bp):
AAGAAGGAGAAAAAGAAAGAAAA
Found at i:7073240 original size:16 final size:16
Alignment explanation
Indices: 7073196--7073255 Score: 50
Period size: 16 Copynumber: 3.6 Consensus size: 16
7073186 GAAGAAGAAG
7073196 AAAAAGAAAGAAAAAA
1 AAAAAGAAAGAAAAAA
* *
7073212 GAAGGAGAA-AAAGAGAGAA
1 -AA--A-AAGAAAGAAAAAA
*
7073231 AAAAGGAAAGAAAAAA
1 AAAAAGAAAGAAAAAA
7073247 AAAAAGAAA
1 AAAAAGAAA
7073256 ATCTACAGTC
Statistics
Matches: 33, Mismatches: 6, Indels: 9
0.69 0.12 0.19
Matches are distributed among these distances:
15 1 0.03
16 17 0.52
17 2 0.06
18 2 0.06
19 9 0.27
20 2 0.06
ACGTcount: A:0.78, C:0.00, G:0.22, T:0.00
Consensus pattern (16 bp):
AAAAAGAAAGAAAAAA
Found at i:7073570 original size:21 final size:20
Alignment explanation
Indices: 7073544--7073588 Score: 72
Period size: 21 Copynumber: 2.2 Consensus size: 20
7073534 AACATCCAGC
7073544 AAAAAAAAAAGGAAAGAGAAG
1 AAAAAAAAAAGGAAA-AGAAG
*
7073565 AAAAAAAAAGGGAAAAGAAG
1 AAAAAAAAAAGGAAAAGAAG
7073585 AAAA
1 AAAA
7073589 GGGCCCACAA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
20 9 0.39
21 14 0.61
ACGTcount: A:0.78, C:0.00, G:0.22, T:0.00
Consensus pattern (20 bp):
AAAAAAAAAAGGAAAAGAAG
Found at i:7074057 original size:17 final size:17
Alignment explanation
Indices: 7074035--7074506 Score: 169
Period size: 18 Copynumber: 25.8 Consensus size: 17
7074025 ACAATTTTAA
7074035 AAAAATTGTCGTG-TTTC
1 AAAAATT-TCGTGTTTTC
* *
7074052 AAAAATTTCGAGTTTTAA
1 AAAAATTTCGTGTTTT-C
**
7074070 AAAAAAATC-TAGTTTTC
1 AAAAATTTCGT-GTTTTC
*
7074087 AAAAAAATTTC-TCATGTTTC
1 --AAAAATTTCGT-GT-TTTC
*
7074107 AAAAATTTTTGTGTTTTC
1 AAAAA-TTTCGTGTTTTC
*
7074125 AAAAATTCTCGTG-CTTC
1 AAAAATT-TCGTGTTTTC
*
7074142 AAAAATTTTCGCGTTTTC
1 AAAAA-TTTCGTGTTTTC
*
7074160 AAAAATTTTCGTGTTTTAAA
1 AAAAA-TTTCGTGTTTT--C
*
7074180 AAAAATTTCGT-ATTTC
1 AAAAATTTCGTGTTTTC
*
7074196 AAAAATATTCGTGTTTTAA
1 AAAAAT-TTCGTGTTTT-C
* *
7074215 AAAAATAAAAAAAGAATCCAT-TTTTC
1 AAAAAT----------TTCGTGTTTTC
*
7074241 -AAAATCGTCGTGTTTTC
1 AAAAAT-TTCGTGTTTTC
* *
7074258 -AAAATTCCAATGTTTT-
1 AAAAATTTC-GTGTTTTC
* *
7074274 AAAAACTTCCGTATTTTC
1 AAAAA-TTTCGTGTTTTC
*
7074292 AAAAATTTCCGTGCTTTC
1 AAAAATTT-CGTGTTTTC
7074310 AAAAATCTTCGTGTTTTC
1 AAAAAT-TTCGTGTTTTC
*
7074328 AAAAATCCTCGTGTTTTC
1 AAAAAT-TTCGTGTTTTC
*
7074346 AAAAATTCCG-GTATTTC
1 AAAAATTTCGTGT-TTTC
*
7074363 AAAAATTCTCGTGTTTTT
1 AAAAATT-TCGTGTTTTC
* *
7074381 AGAACTTCTCGTGTTTT-
1 AAAAATT-TCGTGTTTTC
*
7074398 AAAAACTTCCGTGTTTTC
1 AAAAA-TTTCGTGTTTTC
* *
7074416 AAAATTTTCGTGTTTTTTT
1 AAAAATTTCGTG--TTTTC
* *
7074435 AAGAATTTTCGTG-TCTC
1 AA-AAATTTCGTGTTTTC
*
7074452 TAAAATTCTCGTGTTCTT-
1 AAAAATT-TCGTGTT-TTC
7074470 AAAAATTTTTCGTGTTTTTTAC
1 AAAAA--TTTCGTG--TTTT-C
7074492 AAAAATTTTCGTGTT
1 AAAAA-TTTCGTGTT
7074507 AAAAAAAATT
Statistics
Matches: 349, Mismatches: 57, Indels: 96
0.70 0.11 0.19
Matches are distributed among these distances:
16 19 0.05
17 94 0.27
18 141 0.40
19 43 0.12
20 24 0.07
21 10 0.03
22 5 0.01
25 5 0.01
27 4 0.01
28 4 0.01
ACGTcount: A:0.33, C:0.14, G:0.11, T:0.43
Consensus pattern (17 bp):
AAAAATTTCGTGTTTTC
Found at i:7074196 original size:36 final size:34
Alignment explanation
Indices: 7074029--7074220 Score: 145
Period size: 35 Copynumber: 5.4 Consensus size: 34
7074019 TATGGTACAA
*
7074029 TTTTAAAAAAATTGTCGTGTTTCAAAAA-TTTCGAG
1 TTTTAAAAAAATT-TCGT-TTTCAAAAATTTTCGTG
* * *
7074064 TTTTAAAAAAAAATCTAGTTTTCAAAAAAATTTCTCATG
1 TTTT--AAAAAAATTTCGTTTTC--AAAAATTT-TCGTG
* ** * *
7074103 TTTCAAAAATTTTTGTGTTTTCAAAAATTCTCGTG
1 TTTTAAAAAAATTT-CGTTTTCAAAAATTTTCGTG
* * *
7074138 -CTTCAAAAATTTTCGCGTTTTCAAAAATTTTCGTG
1 TTTTAAAAAAATTT--CGTTTTCAAAAATTTTCGTG
*
7074173 TTTTAAAAAAAATTTCGTATTTCAAAAATATTCGTG
1 TTTT-AAAAAAATTTCGT-TTTCAAAAATTTTCGTG
7074209 TTTTAAAAAAAT
1 TTTTAAAAAAAT
7074221 AAAAAAAGAA
Statistics
Matches: 125, Mismatches: 21, Indels: 22
0.74 0.12 0.13
Matches are distributed among these distances:
34 9 0.07
35 42 0.34
36 32 0.26
37 28 0.22
38 8 0.06
39 6 0.05
ACGTcount: A:0.38, C:0.10, G:0.09, T:0.42
Consensus pattern (34 bp):
TTTTAAAAAAATTTCGTTTTCAAAAATTTTCGTG
Found at i:7074374 original size:35 final size:35
Alignment explanation
Indices: 7074249--7074431 Score: 164
Period size: 35 Copynumber: 5.2 Consensus size: 35
7074239 TCAAAATCGT
*
7074249 CGTGTTTTC-AAAATTC-CAATGTTTT-AAAAACTTC
1 CGTGTTTTCAAAAATTCTC-GTGTTTTCAAAAA-TTC
* * *
7074283 CGTATTTTCAAAAATT-TCCGTGCTTTCAAAAATCTT
1 CGTGTTTTCAAAAATTCT-CGTGTTTTCAAAAAT-TC
*
7074319 CGTGTTTTCAAAAATCCTCGTGTTTTCAAAAATTC
1 CGTGTTTTCAAAAATTCTCGTGTTTTCAAAAATTC
* * *
7074354 CG-GTATTTCAAAAATTCTCGTGTTTTTAGAACTTC
1 CGTGT-TTTCAAAAATTCTCGTGTTTTCAAAAATTC
* *
7074389 TCGTGTTTT-AAAAACTTC-CGTGTTTTCAAAATTTT
1 -CGTGTTTTCAAAAA-TTCTCGTGTTTTCAAAAATTC
7074424 CGTGTTTT
1 CGTGTTTT
7074432 TTTAAGAATT
Statistics
Matches: 123, Mismatches: 16, Indels: 20
0.77 0.10 0.13
Matches are distributed among these distances:
34 18 0.15
35 59 0.48
36 43 0.35
37 3 0.02
ACGTcount: A:0.27, C:0.17, G:0.11, T:0.44
Consensus pattern (35 bp):
CGTGTTTTCAAAAATTCTCGTGTTTTCAAAAATTC
Found at i:7074433 original size:53 final size:53
Alignment explanation
Indices: 7074268--7074488 Score: 195
Period size: 53 Copynumber: 4.1 Consensus size: 53
7074258 AAAATTCCAA
* * * * *
7074268 TGTTTTAAAAACTTC-CGTATTTTCAAAAATTTCCGTGCTTTCAAAAATCTTCG
1 TGTTTTTAGAACTTCTCGTGTTTTCAAAAA-TTCCGTGTTTTCAAAAATTTTCG
* * * * *
7074321 TGTTTTCAAAAATCCTCGTGTTTTCAAAAATTCCG-GTATTTCAAAAATTCTCG
1 TGTTTTTAGAACTTCTCGTGTTTTCAAAAATTCCGTGT-TTTCAAAAATTTTCG
7074374 TGTTTTTAGAACTTCTCGTGTTTT-AAAAACTTCCGTGTTTTC-AAAATTTTCG
1 TGTTTTTAGAACTTCTCGTGTTTTCAAAAA-TTCCGTGTTTTCAAAAATTTTCG
* * *
7074426 TGTTTTTTTAAGAA-TTTTCGTG-TCTCTAAAATTCTCGTGTTCTT-AAAAATTTTTCG
1 TG--TTTTT-AGAACTTCTCGTGTTTTCAAAAATTC-CGTGTT-TTCAAAAA-TTTTCG
7074482 TGTTTTT
1 TGTTTTT
7074489 TACAAAAATT
Statistics
Matches: 141, Mismatches: 15, Indels: 23
0.79 0.08 0.13
Matches are distributed among these distances:
52 17 0.12
53 64 0.45
54 42 0.30
55 10 0.07
56 8 0.06
ACGTcount: A:0.26, C:0.16, G:0.12, T:0.47
Consensus pattern (53 bp):
TGTTTTTAGAACTTCTCGTGTTTTCAAAAATTCCGTGTTTTCAAAAATTTTCG
Found at i:7078612 original size:4 final size:4
Alignment explanation
Indices: 7078603--7078638 Score: 72
Period size: 4 Copynumber: 9.0 Consensus size: 4
7078593 AAAAAGTTCA
7078603 TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG
7078639 GGTGAGATGG
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 32 1.00
ACGTcount: A:0.25, C:0.00, G:0.25, T:0.50
Consensus pattern (4 bp):
TATG
Found at i:7080570 original size:19 final size:18
Alignment explanation
Indices: 7080546--7080648 Score: 56
Period size: 20 Copynumber: 5.8 Consensus size: 18
7080536 TATTTTTTCT
7080546 AAAATTAAAACATTTATAA
1 AAAATTAAAA-ATTTATAA
*
7080565 AAAATTCAAAATTTAT--
1 AAAATTAAAAATTTATAA
* *
7080581 --ATTGTAAAAAATTATAA
1 AAAAT-TAAAAATTTATAA
* *
7080598 AAACTCTAAAAAATATATAA
1 AAAAT-T-AAAAATTTATAA
*
7080618 AAAAGTT--AAATTTTTAA
1 AAAA-TTAAAAATTTATAA
*
7080635 AAATTTAAAAATTT
1 AAAATTAAAAATTT
7080649 TCTAAAATAA
Statistics
Matches: 63, Mismatches: 12, Indels: 19
0.67 0.13 0.20
Matches are distributed among these distances:
14 2 0.03
15 9 0.14
16 2 0.03
17 11 0.17
18 12 0.19
19 12 0.19
20 14 0.22
21 1 0.02
ACGTcount: A:0.59, C:0.04, G:0.02, T:0.35
Consensus pattern (18 bp):
AAAATTAAAAATTTATAA
Found at i:7080578 original size:18 final size:19
Alignment explanation
Indices: 7080546--7080581 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
7080536 TATTTTTTCT
7080546 AAAATTAAAACATTTATAA
1 AAAATTAAAACATTTATAA
*
7080565 AAAATTCAAA-ATTTATA
1 AAAATTAAAACATTTATA
7080582 TTGTAAAAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 7 0.44
19 9 0.56
ACGTcount: A:0.61, C:0.06, G:0.00, T:0.33
Consensus pattern (19 bp):
AAAATTAAAACATTTATAA
Found at i:7082026 original size:23 final size:23
Alignment explanation
Indices: 7082000--7082053 Score: 99
Period size: 23 Copynumber: 2.3 Consensus size: 23
7081990 TGATTTTTAA
*
7082000 ATTTTGAATTATTTAGTGATAAT
1 ATTTAGAATTATTTAGTGATAAT
7082023 ATTTAGAATTATTTAGTGATAAT
1 ATTTAGAATTATTTAGTGATAAT
7082046 ATTTAGAA
1 ATTTAGAA
7082054 AAAATCTAGC
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
23 30 1.00
ACGTcount: A:0.39, C:0.00, G:0.13, T:0.48
Consensus pattern (23 bp):
ATTTAGAATTATTTAGTGATAAT
Found at i:7082027 original size:13 final size:13
Alignment explanation
Indices: 7082009--7082051 Score: 56
Period size: 13 Copynumber: 3.5 Consensus size: 13
7081999 AATTTTGAAT
7082009 TATTTAGTGATAA
1 TATTTAGTGATAA
*
7082022 TATTTA--GA-AT
1 TATTTAGTGATAA
7082032 TATTTAGTGATAA
1 TATTTAGTGATAA
7082045 TATTTAG
1 TATTTAG
7082052 AAAAAATCTA
Statistics
Matches: 25, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
10 7 0.28
11 2 0.08
12 2 0.08
13 14 0.56
ACGTcount: A:0.37, C:0.00, G:0.14, T:0.49
Consensus pattern (13 bp):
TATTTAGTGATAA
Found at i:7082898 original size:17 final size:17
Alignment explanation
Indices: 7082873--7082911 Score: 51
Period size: 17 Copynumber: 2.3 Consensus size: 17
7082863 AGGCTAAGCT
*
7082873 TTTAAAAATATATTTTA
1 TTTACAAATATATTTTA
* *
7082890 TTTACAAATTTGTTTTA
1 TTTACAAATATATTTTA
7082907 TTTAC
1 TTTAC
7082912 TTAAATTTAC
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.36, C:0.05, G:0.03, T:0.56
Consensus pattern (17 bp):
TTTACAAATATATTTTA
Found at i:7088142 original size:23 final size:23
Alignment explanation
Indices: 7088112--7088155 Score: 88
Period size: 23 Copynumber: 1.9 Consensus size: 23
7088102 AATGGAGTTA
7088112 GAACACAAGGCATTTTGGGCAAT
1 GAACACAAGGCATTTTGGGCAAT
7088135 GAACACAAGGCATTTTGGGCA
1 GAACACAAGGCATTTTGGGCA
7088156 GTAAAAAGAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.34, C:0.18, G:0.27, T:0.20
Consensus pattern (23 bp):
GAACACAAGGCATTTTGGGCAAT
Found at i:7089693 original size:23 final size:23
Alignment explanation
Indices: 7089662--7089736 Score: 114
Period size: 23 Copynumber: 3.3 Consensus size: 23
7089652 TTATTTTTAA
*
7089662 ATTTTGAATTATTTAGTGATAAT
1 ATTTAGAATTATTTAGTGATAAT
*
7089685 ACTTAGAATTATTTAGTGATAAT
1 ATTTAGAATTATTTAGTGATAAT
* *
7089708 ATTTAGAATTTTTTAATGATAAT
1 ATTTAGAATTATTTAGTGATAAT
7089731 ATTTAG
1 ATTTAG
7089737 GAAAAATCTA
Statistics
Matches: 47, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 47 1.00
ACGTcount: A:0.37, C:0.01, G:0.12, T:0.49
Consensus pattern (23 bp):
ATTTAGAATTATTTAGTGATAAT
Found at i:7106100 original size:2 final size:2
Alignment explanation
Indices: 7106095--7106120 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
7106085 AGAGAAAATG
7106095 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
7106121 GCATCTTTCA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:7106896 original size:20 final size:22
Alignment explanation
Indices: 7106866--7106912 Score: 62
Period size: 21 Copynumber: 2.2 Consensus size: 22
7106856 ATTAACACAT
7106866 TTTTATTA-TTTTAAAAAATAA
1 TTTTATTATTTTTAAAAAATAA
**
7106887 TTTT-TTATTTTTAATTAATAA
1 TTTTATTATTTTTAAAAAATAA
7106908 TTTTA
1 TTTTA
7106913 ACACATTTGT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
20 3 0.14
21 19 0.86
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (22 bp):
TTTTATTATTTTTAAAAAATAA
Found at i:7107068 original size:13 final size:13
Alignment explanation
Indices: 7107032--7107062 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
7107022 ATTTTAGCTT
*
7107032 CTTTTTAAAAGTG
1 CTTTTCAAAAGTG
7107045 CTTTTCAAAAGTG
1 CTTTTCAAAAGTG
7107058 CTTTT
1 CTTTT
7107063 GGAAAGCCAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.26, C:0.13, G:0.13, T:0.48
Consensus pattern (13 bp):
CTTTTCAAAAGTG
Found at i:7108063 original size:19 final size:19
Alignment explanation
Indices: 7108026--7108067 Score: 59
Period size: 20 Copynumber: 2.2 Consensus size: 19
7108016 TTTGGGATTT
*
7108026 GGGGGAAGTAAAATTTTTG
1 GGGGGAAGTAAAATGTTTG
7108045 AGGGGGAAGTAAAA-GTTTG
1 -GGGGGAAGTAAAATGTTTG
7108064 GGGG
1 GGGG
7108068 AAAAAGTAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 4 0.19
19 4 0.19
20 13 0.62
ACGTcount: A:0.31, C:0.00, G:0.45, T:0.24
Consensus pattern (19 bp):
GGGGGAAGTAAAATGTTTG
Found at i:7108128 original size:54 final size:52
Alignment explanation
Indices: 7108049--7108164 Score: 142
Period size: 54 Copynumber: 2.2 Consensus size: 52
7108039 TTTTTGAGGG
* * *
7108049 GGAAGTAAAAGTTTGGGGGAAAAAGTAAAAGGAAAAAAGTTTTGAGGGTTTGG
1 GGAAGTAAAACTTTGGGAGAAAAAGTAAAAGGAAAAAAGTTTTG-GGGTTTGA
* * * * *
7108102 GAGAAGTAAAACTTTTGGAGAGAAAGTAAAATGTAAAAGGTTTTGGGGTTTGA
1 G-GAAGTAAAACTTTGGGAGAAAAAGTAAAAGGAAAAAAGTTTTGGGGTTTGA
7108155 GGAAGTAAAA
1 GGAAGTAAAA
7108165 ATTTAGAGGG
Statistics
Matches: 54, Mismatches: 8, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
52 9 0.17
53 9 0.17
54 36 0.67
ACGTcount: A:0.42, C:0.01, G:0.33, T:0.24
Consensus pattern (52 bp):
GGAAGTAAAACTTTGGGAGAAAAAGTAAAAGGAAAAAAGTTTTGGGGTTTGA
Found at i:7108129 original size:74 final size:73
Alignment explanation
Indices: 7107992--7108132 Score: 187
Period size: 74 Copynumber: 1.9 Consensus size: 73
7107982 TAAACTTTTA
* * * * *
7107992 GGGAGAAAGTAAAAGAGAAAAAGTTTTGGGATTTGGGGGAAGTAAAATTTTTGAGGGGGAAGTAA
1 GGGAAAAAGTAAAAGAGAAAAAGTTTTGGGATTTGGGAGAAGTAAAATTTTGGAGGAGAAAGTAA
7108057 AAGTTTGG
66 AAGTTTGG
*
7108065 GGGAAAAAGTAAAAG-GAAAAAAGTTTTGAGGGTTTGGGAGAAGTAAAACTTTTGGA-GAGAAAG
1 GGGAAAAAGTAAAAGAG-AAAAAGTTTTG-GGATTTGGGAGAAGTAAAA-TTTTGGAGGAGAAAG
7108128 TAAAA
63 TAAAA
7108133 TGTAAAAGGT
Statistics
Matches: 59, Mismatches: 6, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
72 1 0.02
73 25 0.42
74 27 0.46
75 6 0.10
ACGTcount: A:0.43, C:0.01, G:0.34, T:0.23
Consensus pattern (73 bp):
GGGAAAAAGTAAAAGAGAAAAAGTTTTGGGATTTGGGAGAAGTAAAATTTTGGAGGAGAAAGTAA
AAGTTTGG
Found at i:7108181 original size:52 final size:51
Alignment explanation
Indices: 7108049--7108185 Score: 141
Period size: 54 Copynumber: 2.6 Consensus size: 51
7108039 TTTTTGAGGG
* * *
7108049 GGAAGTAAAAGTTTGGGGGAAAAAGTAAAAGGAAAAAAGTTTTGAGGGTTTGG
1 GGAAGTAAAAATTT-GGGG-AAAAGTAAAATGAAAAAAGTTTTGAGGGTTTGA
* * * *
7108102 GAGAAGTAAAACTTTTGGAGAGAAAGTAAAATGTAAAAGGTTTTG-GGGTTTGA
1 G-GAAGTAAAA-ATTTGGGGA-AAAGTAAAATGAAAAAAGTTTTGAGGGTTTGA
7108155 GGAAGTAAAAATTTAGAGGGAAAAGTAAAAT
1 GGAAGTAAAAATTT-G-GGGAAAAGTAAAAT
7108186 TTAACTTAAT
Statistics
Matches: 71, Mismatches: 8, Indels: 11
0.79 0.09 0.12
Matches are distributed among these distances:
51 3 0.04
52 20 0.28
53 13 0.18
54 32 0.45
55 3 0.04
ACGTcount: A:0.44, C:0.01, G:0.31, T:0.24
Consensus pattern (51 bp):
GGAAGTAAAAATTTGGGGAAAAGTAAAATGAAAAAAGTTTTGAGGGTTTGA
Found at i:7111252 original size:25 final size:26
Alignment explanation
Indices: 7111203--7111252 Score: 75
Period size: 25 Copynumber: 2.0 Consensus size: 26
7111193 ATAAATTTTC
7111203 TCAAAATTTTATCGGGGGTAAAATTA
1 TCAAAATTTTATCGGGGGTAAAATTA
**
7111229 TCAAAATTTTA-CTTGGGTAAAATT
1 TCAAAATTTTATCGGGGGTAAAATT
7111253 GAGGTGAGAA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 11 0.50
26 11 0.50
ACGTcount: A:0.38, C:0.08, G:0.16, T:0.38
Consensus pattern (26 bp):
TCAAAATTTTATCGGGGGTAAAATTA
Found at i:7120052 original size:14 final size:15
Alignment explanation
Indices: 7120026--7120055 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
7120016 TGTATATTTT
7120026 TTAGAGTTTCTGTTA
1 TTAGAGTTTCTGTTA
7120041 TTAGAG-TTCTGTTA
1 TTAGAGTTTCTGTTA
7120055 T
1 T
7120056 AATTTAGGAG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 9 0.60
15 6 0.40
ACGTcount: A:0.20, C:0.07, G:0.20, T:0.53
Consensus pattern (15 bp):
TTAGAGTTTCTGTTA
Found at i:7120257 original size:25 final size:25
Alignment explanation
Indices: 7120191--7120258 Score: 82
Period size: 25 Copynumber: 2.7 Consensus size: 25
7120181 TCAGTAATAC
* * *
7120191 ATATGAATTAAGTGTTAAATGAAAT
1 ATATGAATTAAGTGTTTAATCAAAG
* * *
7120216 ATATAAATTAATTGTTTAATCAAGG
1 ATATGAATTAAGTGTTTAATCAAAG
7120241 ATATGAATTAAGTGTTTA
1 ATATGAATTAAGTGTTTA
7120259 TGTTATGTTT
Statistics
Matches: 35, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
25 35 1.00
ACGTcount: A:0.44, C:0.01, G:0.15, T:0.40
Consensus pattern (25 bp):
ATATGAATTAAGTGTTTAATCAAAG
Found at i:7120861 original size:2 final size:2
Alignment explanation
Indices: 7120854--7120891 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
7120844 ATTAAGCGTA
7120854 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7120892 TTGGTAGTTA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:7121931 original size:28 final size:29
Alignment explanation
Indices: 7121867--7121937 Score: 85
Period size: 27 Copynumber: 2.6 Consensus size: 29
7121857 CTGGAAGGGT
*
7121867 AAGCCTTTGTGGTGA-ACCTCTTAAAAGA
1 AAGCCTTTGTGGTGAGACCTCTGAAAAGA
* * *
7121895 CA-CCTTTGTGTTGAGA-CTCTGAAAGGA
1 AAGCCTTTGTGGTGAGACCTCTGAAAAGA
7121922 AAGCCTTTGTGGTGAG
1 AAGCCTTTGTGGTGAG
7121938 TACTGAATGA
Statistics
Matches: 35, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
27 21 0.60
28 14 0.40
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.30
Consensus pattern (29 bp):
AAGCCTTTGTGGTGAGACCTCTGAAAAGA
Found at i:7126970 original size:22 final size:23
Alignment explanation
Indices: 7126941--7126997 Score: 73
Period size: 22 Copynumber: 2.6 Consensus size: 23
7126931 TGCACTAATG
7126941 AACAGAGAGCACTA-AAGTGCTA
1 AACAGAGAGCACTAGAAGTGCTA
* *
7126963 TACAGAGAGCAC-AGATGTGCTA
1 AACAGAGAGCACTAGAAGTGCTA
*
7126985 AACGGAGAGCACT
1 AACAGAGAGCACT
7126998 GACATGCTAG
Statistics
Matches: 29, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
21 1 0.03
22 28 0.97
ACGTcount: A:0.40, C:0.19, G:0.26, T:0.14
Consensus pattern (23 bp):
AACAGAGAGCACTAGAAGTGCTA
Found at i:7127005 original size:22 final size:22
Alignment explanation
Indices: 7126941--7127021 Score: 65
Period size: 22 Copynumber: 3.5 Consensus size: 22
7126931 TGCACTAATG
7126941 AACAGAGAGCACT-AAAGTGCTA
1 AACAGAGAGCACTGAAA-TGCTA
* * **
7126963 TACAGAGAGCACAGATGTGCTA
1 AACAGAGAGCACTGAAATGCTA
* *
7126985 AACGGAGAGCACTGACATGCTA
1 AACAGAGAGCACTGAAATGCTA
7127007 GTAATCAGAGAGCAC
1 --AA-CAGAGAGCAC
7127022 CAACGTGCTA
Statistics
Matches: 45, Mismatches: 10, Indels: 5
0.75 0.17 0.08
Matches are distributed among these distances:
22 33 0.73
23 1 0.02
24 2 0.04
25 9 0.20
ACGTcount: A:0.40, C:0.20, G:0.26, T:0.15
Consensus pattern (22 bp):
AACAGAGAGCACTGAAATGCTA
Found at i:7127018 original size:25 final size:25
Alignment explanation
Indices: 7126989--7127044 Score: 76
Period size: 25 Copynumber: 2.2 Consensus size: 25
7126979 GTGCTAAACG
** *
7126989 GAGAGCACTGACATGCTAGTAATCA
1 GAGAGCACCAACATGCTAATAATCA
*
7127014 GAGAGCACCAACGTGCTAATAATCA
1 GAGAGCACCAACATGCTAATAATCA
7127039 GAGAGC
1 GAGAGC
7127045 GCGCTAAAGT
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.38, C:0.21, G:0.25, T:0.16
Consensus pattern (25 bp):
GAGAGCACCAACATGCTAATAATCA
Found at i:7127999 original size:5 final size:5
Alignment explanation
Indices: 7127989--7128031 Score: 50
Period size: 5 Copynumber: 8.6 Consensus size: 5
7127979 TTATTTCTTT
* * * *
7127989 TATAA TATAA TATAT TATAA TCTAA TCTAA TCTAA TATAA TAT
1 TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA TAT
7128032 TTATACTTAA
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
5 34 1.00
ACGTcount: A:0.49, C:0.07, G:0.00, T:0.44
Consensus pattern (5 bp):
TATAA
Found at i:7128008 original size:15 final size:15
Alignment explanation
Indices: 7127988--7128036 Score: 55
Period size: 15 Copynumber: 3.3 Consensus size: 15
7127978 TTTATTTCTT
7127988 TTATAATATAATATA
1 TTATAATATAATATA
* *
7128003 TTATAATCTAATCTA
1 TTATAATATAATATA
* *
7128018 ATCTAATATAATAT-
1 TTATAATATAATATA
7128032 TTATA
1 TTATA
7128037 CTTAACTTTT
Statistics
Matches: 26, Mismatches: 8, Indels: 1
0.74 0.23 0.03
Matches are distributed among these distances:
14 3 0.12
15 23 0.88
ACGTcount: A:0.47, C:0.06, G:0.00, T:0.47
Consensus pattern (15 bp):
TTATAATATAATATA
Found at i:7129111 original size:19 final size:19
Alignment explanation
Indices: 7129076--7129115 Score: 55
Period size: 19 Copynumber: 2.1 Consensus size: 19
7129066 ATCTACAAGA
*
7129076 TAAATATTAAATTTAATAT
1 TAAATATTAAATATAATAT
7129095 TAAACTATTAAA-ATAATAT
1 TAAA-TATTAAATATAATAT
7129114 TA
1 TA
7129116 TTTTTGGAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
19 12 0.63
20 7 0.37
ACGTcount: A:0.55, C:0.03, G:0.00, T:0.42
Consensus pattern (19 bp):
TAAATATTAAATATAATAT
Found at i:7132063 original size:15 final size:15
Alignment explanation
Indices: 7132018--7132064 Score: 51
Period size: 15 Copynumber: 3.1 Consensus size: 15
7132008 AGATATTGTT
7132018 TATTAAATTAATTTT-
1 TATTAAA-TAATTTTC
* *
7132033 AATTAATTAATTTTTC
1 TATTAAATAA-TTTTC
7132049 TATTAAATAATTTTC
1 TATTAAATAATTTTC
7132064 T
1 T
7132065 CAACTCAATT
Statistics
Matches: 26, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
14 3 0.12
15 15 0.58
16 8 0.31
ACGTcount: A:0.38, C:0.04, G:0.00, T:0.57
Consensus pattern (15 bp):
TATTAAATAATTTTC
Found at i:7138049 original size:15 final size:15
Alignment explanation
Indices: 7138029--7138067 Score: 53
Period size: 14 Copynumber: 2.7 Consensus size: 15
7138019 TGCTTTGGAG
7138029 GATATTCTTGTTCAT
1 GATATTCTTGTTCAT
*
7138044 GATATTC-TGTTGAT
1 GATATTCTTGTTCAT
*
7138058 TATATTCTTG
1 GATATTCTTG
7138068 AAACTTGCAG
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
14 12 0.57
15 9 0.43
ACGTcount: A:0.21, C:0.10, G:0.15, T:0.54
Consensus pattern (15 bp):
GATATTCTTGTTCAT
Found at i:7141377 original size:13 final size:13
Alignment explanation
Indices: 7141359--7141422 Score: 92
Period size: 13 Copynumber: 4.9 Consensus size: 13
7141349 AGTTCTTCAT
*
7141359 TGCTTTTGAGAAG
1 TGCTTTTCAGAAG
7141372 TGCTTTTCAGAAG
1 TGCTTTTCAGAAG
*
7141385 TGCTTTTGAGAAG
1 TGCTTTTCAGAAG
7141398 TGCTTTTCAGAAG
1 TGCTTTTCAGAAG
* *
7141411 TACTTTTAAGAA
1 TGCTTTTCAGAA
7141423 ATTTGAGTGT
Statistics
Matches: 46, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
13 46 1.00
ACGTcount: A:0.27, C:0.11, G:0.23, T:0.39
Consensus pattern (13 bp):
TGCTTTTCAGAAG
Found at i:7141389 original size:26 final size:26
Alignment explanation
Indices: 7141359--7141422 Score: 110
Period size: 26 Copynumber: 2.5 Consensus size: 26
7141349 AGTTCTTCAT
7141359 TGCTTTTGAGAAGTGCTTTTCAGAAG
1 TGCTTTTGAGAAGTGCTTTTCAGAAG
7141385 TGCTTTTGAGAAGTGCTTTTCAGAAG
1 TGCTTTTGAGAAGTGCTTTTCAGAAG
* *
7141411 TACTTTTAAGAA
1 TGCTTTTGAGAA
7141423 ATTTGAGTGT
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 36 1.00
ACGTcount: A:0.27, C:0.11, G:0.23, T:0.39
Consensus pattern (26 bp):
TGCTTTTGAGAAGTGCTTTTCAGAAG
Found at i:7142039 original size:21 final size:22
Alignment explanation
Indices: 7141997--7142040 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
7141987 AAGCATATGA
* *
7141997 AAATGATTTTGTTATATTCAAT
1 AAATGATTTGGTTATATACAAT
7142019 AAATGATTTGGTTA-ATACAAT
1 AAATGATTTGGTTATATACAAT
7142040 A
1 A
7142041 CTTATATTTG
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
21 7 0.35
22 13 0.65
ACGTcount: A:0.41, C:0.05, G:0.11, T:0.43
Consensus pattern (22 bp):
AAATGATTTGGTTATATACAAT
Found at i:7147318 original size:6 final size:6
Alignment explanation
Indices: 7147307--7147338 Score: 64
Period size: 6 Copynumber: 5.3 Consensus size: 6
7147297 CAGTCTCTAA
7147307 GTCATT GTCATT GTCATT GTCATT GTCATT GT
1 GTCATT GTCATT GTCATT GTCATT GTCATT GT
7147339 TTACTTAAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 26 1.00
ACGTcount: A:0.16, C:0.16, G:0.19, T:0.50
Consensus pattern (6 bp):
GTCATT
Found at i:7148597 original size:54 final size:54
Alignment explanation
Indices: 7148533--7148641 Score: 218
Period size: 54 Copynumber: 2.0 Consensus size: 54
7148523 GAATCTAGAT
7148533 GCAACTTTCCCTAGATTTAATTTAAACATGCAATAACAATAATTAAACTAAAAA
1 GCAACTTTCCCTAGATTTAATTTAAACATGCAATAACAATAATTAAACTAAAAA
7148587 GCAACTTTCCCTAGATTTAATTTAAACATGCAATAACAATAATTAAACTAAAAA
1 GCAACTTTCCCTAGATTTAATTTAAACATGCAATAACAATAATTAAACTAAAAA
7148641 G
1 G
7148642 AAGGGAAAAG
Statistics
Matches: 55, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
54 55 1.00
ACGTcount: A:0.48, C:0.17, G:0.06, T:0.29
Consensus pattern (54 bp):
GCAACTTTCCCTAGATTTAATTTAAACATGCAATAACAATAATTAAACTAAAAA
Found at i:7154563 original size:4 final size:4
Alignment explanation
Indices: 7154554--7154604 Score: 59
Period size: 4 Copynumber: 12.8 Consensus size: 4
7154544 TAAGAACAGA
* * *
7154554 GTAT GTAT GTAT GCT-T GTAT GTAT GCAT GTAG GTAT GCAT GTAT GTAT
1 GTAT GTAT GTAT G-TAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
7154602 GTA
1 GTA
7154605 CATGATTCCT
Statistics
Matches: 39, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
3 1 0.03
4 37 0.95
5 1 0.03
ACGTcount: A:0.24, C:0.06, G:0.27, T:0.43
Consensus pattern (4 bp):
GTAT
Found at i:7154574 original size:12 final size:12
Alignment explanation
Indices: 7154556--7154602 Score: 76
Period size: 12 Copynumber: 3.9 Consensus size: 12
7154546 AGAACAGAGT
7154556 ATGTATGTATGC
1 ATGTATGTATGC
*
7154568 TTGTATGTATGC
1 ATGTATGTATGC
*
7154580 ATGTAGGTATGC
1 ATGTATGTATGC
7154592 ATGTATGTATG
1 ATGTATGTATG
7154603 TACATGATTC
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
12 31 1.00
ACGTcount: A:0.23, C:0.06, G:0.28, T:0.43
Consensus pattern (12 bp):
ATGTATGTATGC
Found at i:7155910 original size:62 final size:62
Alignment explanation
Indices: 7155813--7155935 Score: 246
Period size: 62 Copynumber: 2.0 Consensus size: 62
7155803 TTGGCCTTGG
7155813 GTCTTCTTGTGGTCCCTCCCTCGAAGGAAATTTCTGGAGTCGGTTAGGACTCACTTTTCTTA
1 GTCTTCTTGTGGTCCCTCCCTCGAAGGAAATTTCTGGAGTCGGTTAGGACTCACTTTTCTTA
7155875 GTCTTCTTGTGGTCCCTCCCTCGAAGGAAATTTCTGGAGTCGGTTAGGACTCACTTTTCTT
1 GTCTTCTTGTGGTCCCTCCCTCGAAGGAAATTTCTGGAGTCGGTTAGGACTCACTTTTCTT
7155936 GGATCCTATG
Statistics
Matches: 61, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
62 61 1.00
ACGTcount: A:0.15, C:0.24, G:0.23, T:0.37
Consensus pattern (62 bp):
GTCTTCTTGTGGTCCCTCCCTCGAAGGAAATTTCTGGAGTCGGTTAGGACTCACTTTTCTTA
Found at i:7158973 original size:36 final size:36
Alignment explanation
Indices: 7158926--7159088 Score: 134
Period size: 36 Copynumber: 4.5 Consensus size: 36
7158916 AGAATAAGTT
*
7158926 GTGATCGTAAATCAGTGAGCTTTAAAAATGACAGTC
1 GTGATCGTAAATCAGCGAGCTTTAAAAATGACAGTC
* * * *
7158962 GTGATCGTAAATTAGCGGGCTATTAGAAAACCGAAAGTC
1 GTGATCGTAAATCAGCGAGCT-TTA-AAAA-TGACAGTC
* * ** * *
7159001 ATGATCGTAAATCAGAG-GACCGTAAGAAT-A-AGTT
1 GTGATCGTAAATCAGCGAG-CTTTAAAAATGACAGTC
* * *
7159035 GTGATTGTAAATCAACGAGCTTTAAAAATGACAGTT
1 GTGATCGTAAATCAGCGAGCTTTAAAAATGACAGTC
*
7159071 GTGATTGTAAATCAGCGA
1 GTGATCGTAAATCAGCGA
7159089 ACTGTTAGAA
Statistics
Matches: 99, Mismatches: 21, Indels: 14
0.74 0.16 0.10
Matches are distributed among these distances:
34 23 0.23
35 3 0.03
36 39 0.39
37 6 0.06
38 7 0.07
39 21 0.21
ACGTcount: A:0.37, C:0.13, G:0.23, T:0.26
Consensus pattern (36 bp):
GTGATCGTAAATCAGCGAGCTTTAAAAATGACAGTC
Found at i:7159112 original size:39 final size:36
Alignment explanation
Indices: 7159031--7159120 Score: 119
Period size: 36 Copynumber: 2.4 Consensus size: 36
7159021 CGTAAGAATA
*
7159031 AGTTGTGATTGTAAATCAACGAGCTTTAAAAATGAC
1 AGTTGTGATTGTAAATCAACGAACTTTAAAAATGAC
*
7159067 AGTTGTGATTGTAAATCAGCGAACTGTTAGAAAATTGA-
1 AGTTGTGATTGTAAATCAACGAACT-TTA-AAAA-TGAC
7159105 AGGTTGTGATTGTAAA
1 A-GTTGTGATTGTAAA
7159121 GTACCTTATC
Statistics
Matches: 48, Mismatches: 2, Indels: 5
0.87 0.04 0.09
Matches are distributed among these distances:
36 23 0.48
37 3 0.06
38 5 0.10
39 17 0.35
ACGTcount: A:0.37, C:0.08, G:0.23, T:0.32
Consensus pattern (36 bp):
AGTTGTGATTGTAAATCAACGAACTTTAAAAATGAC
Found at i:7162218 original size:11 final size:11
Alignment explanation
Indices: 7162202--7162229 Score: 56
Period size: 11 Copynumber: 2.5 Consensus size: 11
7162192 CATAGTTGGT
7162202 ATCGATACTGA
1 ATCGATACTGA
7162213 ATCGATACTGA
1 ATCGATACTGA
7162224 ATCGAT
1 ATCGAT
7162230 GCTTTATAGA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.36, C:0.18, G:0.18, T:0.29
Consensus pattern (11 bp):
ATCGATACTGA
Found at i:7166782 original size:27 final size:29
Alignment explanation
Indices: 7166736--7166805 Score: 110
Period size: 28 Copynumber: 2.5 Consensus size: 29
7166726 AAATTAAAAA
*
7166736 TTACCAAAATGT-TATAAATT-TTTTTAT
1 TTACCAAAATATATATAAATTATTTTTAT
7166763 TTACCAAAATATATAT-AATTATTTTTAT
1 TTACCAAAATATATATAAATTATTTTTAT
7166791 TTACCAAAATATATA
1 TTACCAAAATATATA
7166806 AAAAAAACAA
Statistics
Matches: 40, Mismatches: 1, Indels: 3
0.91 0.02 0.07
Matches are distributed among these distances:
27 15 0.38
28 25 0.62
ACGTcount: A:0.43, C:0.09, G:0.01, T:0.47
Consensus pattern (29 bp):
TTACCAAAATATATATAAATTATTTTTAT
Found at i:7166891 original size:27 final size:27
Alignment explanation
Indices: 7166850--7166956 Score: 169
Period size: 27 Copynumber: 4.0 Consensus size: 27
7166840 ACTCCCTGGG
*
7166850 ACAAGGGAACACTGTTGGCGGCACCAA
1 ACAAGGGAACCCTGTTGGCGGCACCAA
7166877 ACAAGGGAACCCTGTTGGCGGCACCAA
1 ACAAGGGAACCCTGTTGGCGGCACCAA
**
7166904 ACAAGGGTTCCCTGTTGGCGGCACCAA
1 ACAAGGGAACCCTGTTGGCGGCACCAA
**
7166931 ACAAGGGTTCCCTGTTGGCGGCACCA
1 ACAAGGGAACCCTGTTGGCGGCACCA
7166957 CTCGTGTTAT
Statistics
Matches: 77, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 77 1.00
ACGTcount: A:0.26, C:0.29, G:0.30, T:0.15
Consensus pattern (27 bp):
ACAAGGGAACCCTGTTGGCGGCACCAA
Found at i:7169677 original size:18 final size:18
Alignment explanation
Indices: 7169651--7169688 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
7169641 ATCCCAACGA
* *
7169651 TCGCCACCACCTTCTTCT
1 TCGCAACCACATTCTTCT
7169669 TCGCAACCACATTCTTCT
1 TCGCAACCACATTCTTCT
7169687 TC
1 TC
7169689 ACCACCAACC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.16, C:0.45, G:0.05, T:0.34
Consensus pattern (18 bp):
TCGCAACCACATTCTTCT
Found at i:7169695 original size:18 final size:18
Alignment explanation
Indices: 7169654--7169695 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
7169644 CCAACGATCG
* *
7169654 CCACCACCTTCTTCTTCG
1 CCACCACATTCTTCTTCA
*
7169672 CAACCACATTCTTCTTCA
1 CCACCACATTCTTCTTCA
7169690 CCACCA
1 CCACCA
7169696 ACCATATCAA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.21, C:0.48, G:0.02, T:0.29
Consensus pattern (18 bp):
CCACCACATTCTTCTTCA
Found at i:7170434 original size:3 final size:3
Alignment explanation
Indices: 7170426--7170499 Score: 148
Period size: 3 Copynumber: 24.7 Consensus size: 3
7170416 AGTAACATCT
7170426 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
7170474 TAA TAA TAA TAA TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TA
7170500 CTATAAATTT
Statistics
Matches: 71, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 71 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:7170854 original size:27 final size:27
Alignment explanation
Indices: 7170785--7170864 Score: 133
Period size: 27 Copynumber: 3.0 Consensus size: 27
7170775 ATAACACGAG
* **
7170785 TGGTGCCGCCAACAGGGAACCCTTGTT
1 TGGTGCCGCCAACAGTGTTCCCTTGTT
7170812 TGGTGCCGCCAACAGTGTTCCCTTGTT
1 TGGTGCCGCCAACAGTGTTCCCTTGTT
7170839 TGGTGCCGCCAACAGTGTTCCCTTGT
1 TGGTGCCGCCAACAGTGTTCCCTTGT
7170865 CCCAGGGAGT
Statistics
Matches: 50, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
27 50 1.00
ACGTcount: A:0.14, C:0.30, G:0.28, T:0.29
Consensus pattern (27 bp):
TGGTGCCGCCAACAGTGTTCCCTTGTT
Found at i:7170928 original size:12 final size:12
Alignment explanation
Indices: 7170891--7170928 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
7170881 ATCAGTCCAG
*
7170891 TTTTTTTCTGTT
1 TTTTTTTTTGTT
7170903 TTTTTTTTTGTT
1 TTTTTTTTTGTT
7170915 TTTTTGTTTT-TT
1 TTTTT-TTTTGTT
7170927 TT
1 TT
7170929 ATATATTTTG
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
12 20 0.83
13 4 0.17
ACGTcount: A:0.00, C:0.03, G:0.08, T:0.89
Consensus pattern (12 bp):
TTTTTTTTTGTT
Found at i:7170958 original size:27 final size:26
Alignment explanation
Indices: 7170926--7170996 Score: 115
Period size: 27 Copynumber: 2.7 Consensus size: 26
7170916 TTTTGTTTTT
7170926 TTTATATATTTTGGTAAATAAAAAAA
1 TTTATATATTTTGGTAAATAAAAAAA
7170952 TTATATATATTTTGGTAAATAAAAAAA
1 TT-TATATATTTTGGTAAATAAAAAAA
*
7170979 TTTATAACATTTTGGTAA
1 TTTAT-ATATTTTGGTAA
7170997 TTTTTAATTT
Statistics
Matches: 42, Mismatches: 1, Indels: 3
0.91 0.02 0.07
Matches are distributed among these distances:
26 5 0.12
27 37 0.88
ACGTcount: A:0.46, C:0.01, G:0.08, T:0.44
Consensus pattern (26 bp):
TTTATATATTTTGGTAAATAAAAAAA
Found at i:7173141 original size:2 final size:2
Alignment explanation
Indices: 7173134--7173161 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
7173124 TACCATGCAA
7173134 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7173162 TTATCAATTA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:7184184 original size:21 final size:22
Alignment explanation
Indices: 7184146--7184190 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
7184136 ATTTTAGTTT
7184146 TTCTAGTAAAAAGAAAAAAATA
1 TTCTAGTAAAAAGAAAAAAATA
7184168 TTCTAGTAAAAAGAAAAAAATA
1 TTCTAGTAAAAAGAAAAAAATA
7184190 T
1 T
7184191 GGATTTTACA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.62, C:0.04, G:0.09, T:0.24
Consensus pattern (22 bp):
TTCTAGTAAAAAGAAAAAAATA
Found at i:7184469 original size:21 final size:22
Alignment explanation
Indices: 7184432--7184475 Score: 56
Period size: 21 Copynumber: 2.0 Consensus size: 22
7184422 CTTAGTTTCC
7184432 TCAAGGAAAAATCAAGTT-TTT
1 TCAAGGAAAAATCAAGTTATTT
*
7184453 TCAA-GAAAAACTTAAGTTATTT
1 TCAAGGAAAAA-TCAAGTTATTT
7184475 T
1 T
7184476 TTTTATAGAG
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
20 6 0.30
21 10 0.50
22 4 0.20
ACGTcount: A:0.43, C:0.09, G:0.11, T:0.36
Consensus pattern (22 bp):
TCAAGGAAAAATCAAGTTATTT
Found at i:7186283 original size:73 final size:68
Alignment explanation
Indices: 7186149--7186283 Score: 162
Period size: 68 Copynumber: 1.9 Consensus size: 68
7186139 TTTAATAGAT
* * **
7186149 TTAATATTAAATTTAATTTAATACTTATCTTAATAGTATTTTATTAATCTAATATTAAAGTGGTT
1 TTAATATTAAATTAAATTTAATACTTATCTTAATAATATTAGATTAATCTAATATTAAAGTGGTT
7186214 ATC
66 ATC
** *
7186217 TTAATATTAAATTAAATTTAATGTTTATCTTGTAGATAAATATTAGATTAAATTTAATATTAAAG
1 TTAATATTAAATTAAATTTAATACTTATC-T-TA-AT-AATATTAGATT-AATCTAATATTAAAG
7186282 TG
61 TG
7186284 ATTAAGTTTA
Statistics
Matches: 55, Mismatches: 7, Indels: 5
0.82 0.10 0.07
Matches are distributed among these distances:
68 26 0.47
69 1 0.02
70 2 0.04
71 2 0.04
72 8 0.15
73 16 0.29
ACGTcount: A:0.41, C:0.04, G:0.07, T:0.48
Consensus pattern (68 bp):
TTAATATTAAATTAAATTTAATACTTATCTTAATAATATTAGATTAATCTAATATTAAAGTGGTT
ATC
Found at i:7192184 original size:17 final size:18
Alignment explanation
Indices: 7192151--7192185 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
7192141 TAGTTCAACT
*
7192151 CACAATCAAACATACAAA
1 CACAATCAAAAATACAAA
7192169 CACAAT-AAAAATACAAA
1 CACAATCAAAAATACAAA
7192186 AAAATTTAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 10 0.62
18 6 0.38
ACGTcount: A:0.66, C:0.23, G:0.00, T:0.11
Consensus pattern (18 bp):
CACAATCAAAAATACAAA
Found at i:7196180 original size:22 final size:22
Alignment explanation
Indices: 7196167--7196229 Score: 74
Period size: 23 Copynumber: 2.7 Consensus size: 22
7196157 TTGTTTTGAT
7196167 ATTGTTCTTGATTTGTTCTGGAA
1 ATTGTT-TTGATTTGTTCTGGAA
*
7196190 ATTGTTTTGA-TAGTCTGCTGGAA
1 ATTGTTTTGATTTGT-T-CTGGAA
7196213 ATTGTTCTTGATTTGTT
1 ATTGTT-TTGATTTGTT
7196230 AGTGAGTAGA
Statistics
Matches: 34, Mismatches: 2, Indels: 7
0.79 0.05 0.16
Matches are distributed among these distances:
21 3 0.09
22 5 0.15
23 18 0.53
24 5 0.15
25 3 0.09
ACGTcount: A:0.17, C:0.08, G:0.22, T:0.52
Consensus pattern (22 bp):
ATTGTTTTGATTTGTTCTGGAA
Found at i:7196229 original size:34 final size:35
Alignment explanation
Indices: 7196179--7196336 Score: 94
Period size: 34 Copynumber: 4.5 Consensus size: 35
7196169 TGTTCTTGAT
* *
7196179 TTGTTCTGGAAATTGTTTTGATAGTCTGCTGGAAA
1 TTGTTCTTGAATTTGTTTTGATAGTCTGCTGGAAA
* **
7196214 TTGTTCTTG-ATTTGTTAGTGAGTAGAAGATGAAACTGGAAA
1 TTGTTCTTGAATTTGTT-TTGA-TAG--TCTG---CTGGAAA
* * * * * *
7196255 TTG---TTGCATTTGTTTTGATATTGTTCTTG-AT
1 TTGTTCTTGAATTTGTTTTGATAGTCTGCTGGAAA
* *
7196286 TTGTTCTGGAAATTGTTTTGATAGTCTGCTGGAAA
1 TTGTTCTTGAATTTGTTTTGATAGTCTGCTGGAAA
7196321 TTGTTCTTG-ATTTGTT
1 TTGTTCTTGAATTTGTT
7196337 AGTGAGTAGA
Statistics
Matches: 89, Mismatches: 22, Indels: 25
0.65 0.16 0.18
Matches are distributed among these distances:
31 4 0.04
32 3 0.03
34 31 0.35
35 21 0.24
36 3 0.03
37 2 0.02
38 8 0.09
39 7 0.08
41 10 0.11
ACGTcount: A:0.22, C:0.07, G:0.24, T:0.47
Consensus pattern (35 bp):
TTGTTCTTGAATTTGTTTTGATAGTCTGCTGGAAA
Found at i:7196289 original size:22 final size:22
Alignment explanation
Indices: 7196248--7196336 Score: 78
Period size: 23 Copynumber: 4.0 Consensus size: 22
7196238 GAAGATGAAA
7196248 CTGGAAATTG--TTGCATTTGTT
1 CTGGAAATTGTTTTG-ATTTGTT
* *
7196269 -TTGATATTGTTCTTGATTTGTT
1 CTGGAAATTGTT-TTGATTTGTT
*
7196291 CTGGAAATTGTTTTGA-TAGTCT
1 CTGGAAATTGTTTTGATTTGT-T
7196313 GCTGGAAATTGTTCTTGATTTGTT
1 -CTGGAAATTGTT-TTGATTTGTT
7196337 AGTGAGTAGA
Statistics
Matches: 54, Mismatches: 6, Indels: 13
0.74 0.08 0.18
Matches are distributed among these distances:
20 7 0.13
21 3 0.06
22 12 0.22
23 24 0.44
24 5 0.09
25 3 0.06
ACGTcount: A:0.18, C:0.08, G:0.22, T:0.52
Consensus pattern (22 bp):
CTGGAAATTGTTTTGATTTGTT
Found at i:7196321 original size:107 final size:107
Alignment explanation
Indices: 7196135--7196364 Score: 442
Period size: 107 Copynumber: 2.1 Consensus size: 107
7196125 GCTGTTTTCA
*
7196135 ATGAAACTGGAAACTGTTGCATTTGTTTTGATATTGTTCTTGATTTGTTCTGGAAATTGTTTTGA
1 ATGAAACTGGAAATTGTTGCATTTGTTTTGATATTGTTCTTGATTTGTTCTGGAAATTGTTTTGA
7196200 TAGTCTGCTGGAAATTGTTCTTGATTTGTTAGTGAGTAGAAG
66 TAGTCTGCTGGAAATTGTTCTTGATTTGTTAGTGAGTAGAAG
7196242 ATGAAACTGGAAATTGTTGCATTTGTTTTGATATTGTTCTTGATTTGTTCTGGAAATTGTTTTGA
1 ATGAAACTGGAAATTGTTGCATTTGTTTTGATATTGTTCTTGATTTGTTCTGGAAATTGTTTTGA
7196307 TAGTCTGCTGGAAATTGTTCTTGATTTGTTAGTGAGTAGAAG
66 TAGTCTGCTGGAAATTGTTCTTGATTTGTTAGTGAGTAGAAG
*
7196349 ATGAATCTGGAAATTG
1 ATGAAACTGGAAATTG
7196365 CAAGTATAGT
Statistics
Matches: 121, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
107 121 1.00
ACGTcount: A:0.24, C:0.07, G:0.24, T:0.44
Consensus pattern (107 bp):
ATGAAACTGGAAATTGTTGCATTTGTTTTGATATTGTTCTTGATTTGTTCTGGAAATTGTTTTGA
TAGTCTGCTGGAAATTGTTCTTGATTTGTTAGTGAGTAGAAG
Found at i:7200395 original size:47 final size:47
Alignment explanation
Indices: 7200342--7200493 Score: 165
Period size: 47 Copynumber: 3.3 Consensus size: 47
7200332 TCATATAAGA
*
7200342 ATATTTATTATTAAGAATTTTATGAAATTATATATCATTATTAAATT
1 ATATTTAATATTAAGAATTTTATGAAATTATATATCATTATTAAATT
** *
7200389 ATATTTAATATTAATTA-TTT-T-AAATTATATA-AATTCATATAAGA--
1 ATATTTAATATTAAGAATTTTATGAAATTATATATCATT-AT-TAA-ATT
* *
7200433 A-AGTTTATTATCAAGAATTTTATGAAATTATATATCATTATTAAATT
1 ATA-TTTAATATTAAGAATTTTATGAAATTATATATCATTATTAAATT
7200480 ATATTTAATATTAA
1 ATATTTAATATTAA
7200494 TTATCTTAAA
Statistics
Matches: 83, Mismatches: 11, Indels: 22
0.72 0.09 0.19
Matches are distributed among these distances:
43 4 0.05
44 23 0.28
45 8 0.10
46 8 0.10
47 36 0.43
48 4 0.05
ACGTcount: A:0.45, C:0.03, G:0.04, T:0.49
Consensus pattern (47 bp):
ATATTTAATATTAAGAATTTTATGAAATTATATATCATTATTAAATT
Found at i:7200440 original size:91 final size:90
Alignment explanation
Indices: 7200327--7200611 Score: 396
Period size: 91 Copynumber: 3.3 Consensus size: 90
7200317 ATGATTTTAG
*
7200327 TAAATTCATATAAGAATATTTATTATTAAGAATTTTATGAAATTATATATCATTATTAAATTATA
1 TAAATTCATATAAGAA-ATTTATTATCAAGAATTTTATGAAATTATATATCATTATTAAATTATA
*
7200392 TTTAATATTAATTATTTTAAATTATA
65 TTTAATATTAATTATCTTAAATTATA
7200418 TAAATTCATATAAGAAAGTTTATTATCAAGAATTTTATGAAATTATATATCATTATTAAATTATA
1 TAAATTCATATAAGAAA-TTTATTATCAAGAATTTTATGAAATTATATATCATTATTAAATTATA
7200483 TTTAATATTAATTATCTTAAATTATA
65 TTTAATATTAATTATCTTAAATTATA
*
7200509 TAAATTCATATAAG-AA---A-T-T------TTTTATGAAATTATATATTATTATTAAATTATAT
1 TAAATTCATATAAGAAATTTATTATCAAGAATTTTATGAAATTATATATCATTATTAAATTATAT
* * *
7200562 TTAAAAATAATTATATTAAATTATA
66 TTAATATTAATTATCTTAAATTATA
*
7200587 CAAATTCATATAAGAAAATTTATTA
1 TAAATTCATATAAG-AAATTTATTA
7200612 CTAATAATTA
Statistics
Matches: 179, Mismatches: 7, Indels: 22
0.86 0.03 0.11
Matches are distributed among these distances:
78 68 0.38
80 2 0.01
83 1 0.01
84 2 0.01
85 1 0.01
86 1 0.01
90 3 0.02
91 101 0.56
ACGTcount: A:0.47, C:0.03, G:0.04, T:0.47
Consensus pattern (90 bp):
TAAATTCATATAAGAAATTTATTATCAAGAATTTTATGAAATTATATATCATTATTAAATTATAT
TTAATATTAATTATCTTAAATTATA
Found at i:7200510 original size:44 final size:44
Alignment explanation
Indices: 7200357--7200510 Score: 143
Period size: 44 Copynumber: 3.4 Consensus size: 44
7200347 TATTATTAAG
* *
7200357 AATTTTATGAAATTATATATCATTATTAAATTATATTTAATATT
1 AATTATATTAAATTATATATCATTATTAAATTATATTTAATATT
* ** **
7200401 AATTATTTTAAATTATATAAATTCATATAAGAAAGTT-TA-TT-ATCAAG
1 AATTATATTAAATTATAT--A-TCAT-TATTAAA-TTATATTTAAT-ATT
* *
7200448 AATTTTATGAAATTATATATCATTATTAAATTATATTTAATATT
1 AATTATATTAAATTATATATCATTATTAAATTATATTTAATATT
*
7200492 AATTATCTTAAATTATATA
1 AATTATATTAAATTATATA
7200511 AATTCATATA
Statistics
Matches: 84, Mismatches: 17, Indels: 18
0.71 0.14 0.15
Matches are distributed among these distances:
42 2 0.02
43 7 0.08
44 38 0.45
45 3 0.04
46 3 0.04
47 22 0.26
48 7 0.08
49 2 0.02
ACGTcount: A:0.45, C:0.03, G:0.03, T:0.49
Consensus pattern (44 bp):
AATTATATTAAATTATATATCATTATTAAATTATATTTAATATT
Found at i:7200540 original size:44 final size:44
Alignment explanation
Indices: 7200327--7200645 Score: 122
Period size: 44 Copynumber: 7.3 Consensus size: 44
7200317 ATGATTTTAG
* * * *
7200327 TAAATTCATATAAGAATATTTATTATTAAGAATTTTATGAAATTATA
1 TAAATTCATATAAGAA-ATTTTTTA-T-ATAATTATATTAAATTATA
** *
7200374 T--A-TCAT-TATTAAATTATATTTAATATTAATTATTTTAAATTATA
1 TAAATTCATATAAGAAATT-T-TTT-ATA-TAATTATATTAAATTATA
* * * *
7200418 TAAATTCATATAAGAAAGTTTATTATCAAGAATTTTATGAAATTATA
1 TAAATTCATATAAGAAA-TTTTTTAT--ATAATTATATTAAATTATA
** *
7200465 T--A-TCAT-TATTAAATTATATTTAATATTAATTATCTTAAATTATA
1 TAAATTCATATAAGAAATT-T-TTT-ATA-TAATTATATTAAATTATA
*
7200509 TAAATTCATATAAGAAATTTTTTATGA-AATTATA-TATTATTAT-
1 TAAATTCATATAAGAAATTTTTTAT-ATAATTATATTA-AATTATA
**
7200552 TAAATT-ATAT-TTAAA------A-ATAATTATATTAAATTATA
1 TAAATTCATATAAGAAATTTTTTATATAATTATATTAAATTATA
* * * *
7200587 CAAATTCATATAAGAAAATTTATTACTAATAATTATTTTAAATTTTA
1 TAAATTCATATAAG-AAATTTTTTA-T-ATAATTATATTAAATTATA
7200634 TTAAA-TCATATA
1 -TAAATTCATATA
7200646 TTTTAATTAA
Statistics
Matches: 201, Mismatches: 34, Indels: 74
0.65 0.11 0.24
Matches are distributed among these distances:
33 1 0.00
34 12 0.06
35 8 0.04
36 4 0.02
38 3 0.01
41 3 0.01
42 9 0.04
43 21 0.10
44 55 0.27
45 7 0.03
46 8 0.04
47 51 0.25
48 17 0.08
49 2 0.01
ACGTcount: A:0.46, C:0.03, G:0.03, T:0.47
Consensus pattern (44 bp):
TAAATTCATATAAGAAATTTTTTATATAATTATATTAAATTATA
Found at i:7200544 original size:78 final size:78
Alignment explanation
Indices: 7200450--7200603 Score: 263
Period size: 78 Copynumber: 2.0 Consensus size: 78
7200440 TTATCAAGAA
* * * *
7200450 TTTTATGAAATTATATATCATTATTAAATTATATTTAATATTAATTATCTTAAATTATATAAATT
1 TTTTATGAAATTATATATCATTATTAAATTATATTTAAAAATAATTATATTAAATTATACAAATT
7200515 CATATAAGAAATT
66 CATATAAGAAATT
*
7200528 TTTTATGAAATTATATATTATTATTAAATTATATTTAAAAATAATTATATTAAATTATACAAATT
1 TTTTATGAAATTATATATCATTATTAAATTATATTTAAAAATAATTATATTAAATTATACAAATT
7200593 CATATAAGAAA
66 CATATAAGAAA
7200604 ATTTATTACT
Statistics
Matches: 71, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
78 71 1.00
ACGTcount: A:0.47, C:0.03, G:0.03, T:0.47
Consensus pattern (78 bp):
TTTTATGAAATTATATATCATTATTAAATTATATTTAAAAATAATTATATTAAATTATACAAATT
CATATAAGAAATT
Found at i:7200812 original size:59 final size:57
Alignment explanation
Indices: 7200747--7201165 Score: 200
Period size: 59 Copynumber: 7.0 Consensus size: 57
7200737 ATTATTAAGA
7200747 ATTTTATTA-AATCATATATTTTAATTAAAATATATTTAATAATTATTATTTCAAATTAT
1 ATTTTA-TAGAATCATATATTTTAATTAAAATATATTTAATAATTATTATTT-AAA-TAT
* * * * * *
7200806 ATTTTATAGTAA-CATATATTATGATTTTAGTAAAT-TCATATAAGAA-TATTGATTATTAAGA-
1 ATTTTATAG-AATCATATATT-TTA-ATTA--AAATAT-ATTTAATAATTATT-ATT-TAAATAT
*
7200867 ATTTTATTA-AATCATATATTTTAATTAAAATATATTTAATAATAATTATCTTAAATTAT
1 ATTTTA-TAGAATCATATATTTTAATTAAAATATATTTAATAATTATTAT-TTAAA-TAT
* * * * * * *
7200926 ATTTTATAGTATCATATATTATGATTTGAGTAAAT-TCATATAAGAA-TATTGATTATTAAGA-
1 ATTTTATAGAATCATATATT-TTAATT-A--AAATAT-ATTTAATAATTATT-ATT-TAAATAT
* *
7200987 ATTTTATTA-AATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAAAATAT
1 ATTTTA-TAGAATCATATATTTTAATTAAAATATATTTAATAATTATTAT-TT-AAATAT
* * * * * * * * * *
7201046 ATTTTATAGTATCATATATTATGATCAGAGTAAATTCATACA-AGAATATTGATTATTAAGA-
1 ATTTTATAGAATCATATATTTTAATTAAAATATATT--TA-ATA-ATTATT-ATT-TAAATAT
* *
7201107 ATTTTATTA-AATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAAA-AT
1 ATTTTA-TAGAATCATATATTTTAATTAAAATATATTTAATAATTATTAT-TTAAATAT
7201164 AT
1 AT
7201166 GATTAAATTA
Statistics
Matches: 266, Mismatches: 53, Indels: 84
0.66 0.13 0.21
Matches are distributed among these distances:
56 1 0.00
57 37 0.14
58 26 0.10
59 62 0.23
60 16 0.06
61 61 0.23
62 27 0.10
63 35 0.13
64 1 0.00
ACGTcount: A:0.44, C:0.03, G:0.05, T:0.47
Consensus pattern (57 bp):
ATTTTATAGAATCATATATTTTAATTAAAATATATTTAATAATTATTATTTAAATAT
Found at i:7201015 original size:18 final size:17
Alignment explanation
Indices: 7200987--7201021 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
7200977 ATTATTAAGA
*
7200987 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
7201004 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
7201022 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:7201135 original size:18 final size:17
Alignment explanation
Indices: 7201107--7201141 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
7201097 ATTATTAAGA
*
7201107 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
7201124 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
7201142 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:7201165 original size:120 final size:119
Alignment explanation
Indices: 7200627--7201161 Score: 883
Period size: 120 Copynumber: 4.5 Consensus size: 119
7200617 AATTATTTTA
*
7200627 AATTTTATTAAATCATATATTTTAATTAAAATATATTTAATAATTATTATTTCAAATTATATTTT
1 AATTTTATTAAATCATATATTTTAATTAAAATATATTTAATAATAATTATTT-AAATTATATTTT
* * ***
7200692 ATACT-TTATATATTATGATTTTTTTAAATTCATATAAGAATATTGATTATTAAG
65 ATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAG
*
7200746 AATTTTATTAAATCATATATTTTAATTAAAATATATTTAATAATTATTATTTCAAATTATATTTT
1 AATTTTATTAAATCATATATTTTAATTAAAATATATTTAATAATAATTATTT-AAATTATATTTT
* *
7200811 ATAGTAACATATATTATGATTTTAGTAAATTCATATAAGAATATTGATTATTAAG
65 ATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAG
7200866 AATTTTATTAAATCATATATTTTAATTAAAATATATTTAATAATAATTATCTTAAATTATATTTT
1 AATTTTATTAAATCATATATTTTAATTAAAATATATTTAATAATAATTAT-TTAAATTATATTTT
7200931 ATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAG
65 ATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAG
* *
7200986 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAAAATATATTTT
1 AATTTTATTAAATCATATATTTTAATTAAAATATATTTAATAATAATTAT-TTAAATTATATTTT
** *
7201051 ATAGTATCATATATTATGATCAGAGTAAATTCATACAAGAATATTGATTATTAAG
65 ATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAG
*
7201106 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAAA
1 AATTTTATTAAATCATATATTTTAATTAAAATATATTTAATAATAATTAT-TTAAA
7201162 ATATGATTAA
Statistics
Matches: 400, Mismatches: 14, Indels: 3
0.96 0.03 0.01
Matches are distributed among these distances:
119 69 0.17
120 329 0.82
121 2 0.00
ACGTcount: A:0.44, C:0.03, G:0.05, T:0.48
Consensus pattern (119 bp):
AATTTTATTAAATCATATATTTTAATTAAAATATATTTAATAATAATTATTTAAATTATATTTTA
TAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAG
Found at i:7210940 original size:12 final size:12
Alignment explanation
Indices: 7210920--7210955 Score: 63
Period size: 12 Copynumber: 3.0 Consensus size: 12
7210910 CCATGTCTCG
7210920 AGCGTACAATAA
1 AGCGTACAATAA
*
7210932 AGTGTACAATAA
1 AGCGTACAATAA
7210944 AGCGTACAATAA
1 AGCGTACAATAA
7210956 GTTTGAGACA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
12 22 1.00
ACGTcount: A:0.50, C:0.14, G:0.17, T:0.19
Consensus pattern (12 bp):
AGCGTACAATAA
Found at i:7220042 original size:18 final size:18
Alignment explanation
Indices: 7220021--7220062 Score: 50
Period size: 18 Copynumber: 2.3 Consensus size: 18
7220011 AAAATTTTTT
*
7220021 TTTTATTTTATTA-ATTAC
1 TTTTAATTT-TTAGATTAC
*
7220039 TTTTAATTTTTAGATTAT
1 TTTTAATTTTTAGATTAC
7220057 TTTTAA
1 TTTTAA
7220063 ATTTCTAAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
17 3 0.14
18 18 0.86
ACGTcount: A:0.29, C:0.02, G:0.02, T:0.67
Consensus pattern (18 bp):
TTTTAATTTTTAGATTAC
Found at i:7220690 original size:93 final size:92
Alignment explanation
Indices: 7220578--7220753 Score: 244
Period size: 93 Copynumber: 1.9 Consensus size: 92
7220568 TAAGCCCCTC
* * *
7220578 CTTTTTTTTTGCACTCAATTGAGCACATGAGCTTTCAAAATGTATCAAAAAGACCCTCAAACTTA
1 CTTTTTTTTTGCACTCAATTGAGCACATGAACTTTCAAAATGCATCAAAAAGACCCTCAAAATT-
7220643 TTAAAAAAAAGCAATTAAGTCATTACTT
65 TTAAAAAAAAGCAATTAAGTCATTACTT
* * * * *
7220671 CTTTTTTTTTTCACTCAATTGGGTACTTGAACTTTTAAAATGCATCAAAAAGACCCTCAAAATTT
1 CTTTTTTTTTGCACTCAATTGAGCACATGAACTTTCAAAATGCATCAAAAAGACCCTCAAAATTT
** *
7220736 TTTAAAACAGCAATTAAG
66 TAAAAAAAAGCAATTAAG
7220754 CCCCTACTCT
Statistics
Matches: 72, Mismatches: 11, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
92 16 0.22
93 56 0.78
ACGTcount: A:0.38, C:0.18, G:0.10, T:0.35
Consensus pattern (92 bp):
CTTTTTTTTTGCACTCAATTGAGCACATGAACTTTCAAAATGCATCAAAAAGACCCTCAAAATTT
TAAAAAAAAGCAATTAAGTCATTACTT
Found at i:7220823 original size:36 final size:34
Alignment explanation
Indices: 7220769--7220841 Score: 92
Period size: 36 Copynumber: 2.1 Consensus size: 34
7220759 ACTCTTACTA
*
7220769 AAATTATAAAAAATTAAAAAGTAGAAAATTTATT
1 AAATTATAAAAAATTAAAAAATAGAAAATTTATT
* **
7220803 AAATTTTAATAAAATTTAAAAAATTTAAAATTTATT
1 AAATTATAA-AAAA-TTAAAAAATAGAAAATTTATT
7220839 AAA
1 AAA
7220842 AATTATAATT
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
34 8 0.24
35 4 0.12
36 21 0.64
ACGTcount: A:0.60, C:0.00, G:0.03, T:0.37
Consensus pattern (34 bp):
AAATTATAAAAAATTAAAAAATAGAAAATTTATT
Found at i:7221404 original size:86 final size:88
Alignment explanation
Indices: 7221258--7221450 Score: 295
Period size: 86 Copynumber: 2.2 Consensus size: 88
7221248 ATAAAAGCAT
* *
7221258 GGGG-TTAATTGCTTTTTTTGAAAATTTTGAGGGTCTTTTTGATGCATTTTGAAAGTTCAAGTAC
1 GGGGCTTAATTGCTTTTTTTGAAAATTTTGAGGGCCTTTTTGATGCATTTTAAAAGTTCAAGTAC
*
7221322 CCAATTGAGTGCAAAAAAAAAGTA
66 CCAAATGAGTG-AAAAAAAAAGTA
* *
7221346 GGGGCTTAATTGCATTTTTT-AAGA-TTTGAGGGCCTTTTT-ATGCATTTTAAAAGTTCAAGTAC
1 GGGGCTTAATTGCTTTTTTTGAAAATTTTGAGGGCCTTTTTGATGCATTTTAAAAGTTCAAGTAC
*
7221408 CCAAATGAGTGGAAAAAAAAGTA
66 CCAAATGAGTGAAAAAAAAAGTA
7221431 GGGGCTTAATTGCTTTTTTT
1 GGGGCTTAATTGCTTTTTTT
7221451 TTTTTTAAGT
Statistics
Matches: 97, Mismatches: 7, Indels: 5
0.89 0.06 0.05
Matches are distributed among these distances:
85 30 0.31
86 32 0.33
87 14 0.14
88 7 0.07
89 14 0.14
ACGTcount: A:0.31, C:0.10, G:0.22, T:0.38
Consensus pattern (88 bp):
GGGGCTTAATTGCTTTTTTTGAAAATTTTGAGGGCCTTTTTGATGCATTTTAAAAGTTCAAGTAC
CCAAATGAGTGAAAAAAAAAGTA
Found at i:7233357 original size:25 final size:26
Alignment explanation
Indices: 7233329--7233377 Score: 82
Period size: 25 Copynumber: 1.9 Consensus size: 26
7233319 TCCAAAAGCA
*
7233329 TTAATAGTTAA-TTTGCTTGATTATG
1 TTAATAGTTAAGTTTGATTGATTATG
7233354 TTAATAGTTAAGTTTGATTGATTA
1 TTAATAGTTAAGTTTGATTGATTA
7233378 AGGGGGAGTT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 11 0.50
26 11 0.50
ACGTcount: A:0.31, C:0.02, G:0.16, T:0.51
Consensus pattern (26 bp):
TTAATAGTTAAGTTTGATTGATTATG
Found at i:7240298 original size:40 final size:40
Alignment explanation
Indices: 7240223--7240330 Score: 148
Period size: 40 Copynumber: 2.7 Consensus size: 40
7240213 AGTTTGGCAC
* * *
7240223 CCAGTGCCTCATCGGAT-AATTCAAAGTAGTAAATTGACA
1 CCAGTGTCTCATCGGATAAATCCGAAGTAGTAAATTGACA
*
7240262 CCAGTGTCTCATCGAATAAATCCGAAGTAGTAAATTGACA
1 CCAGTGTCTCATCGGATAAATCCGAAGTAGTAAATTGACA
*
7240302 CCTAGTGTCTCATCGGTTAAA-CCGAAGTA
1 CC-AGTGTCTCATCGGATAAATCCGAAGTA
7240331 AAGGGCACCT
Statistics
Matches: 61, Mismatches: 6, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
39 15 0.25
40 30 0.49
41 16 0.26
ACGTcount: A:0.34, C:0.21, G:0.19, T:0.26
Consensus pattern (40 bp):
CCAGTGTCTCATCGGATAAATCCGAAGTAGTAAATTGACA
Found at i:7241258 original size:5 final size:4
Alignment explanation
Indices: 7241200--7241275 Score: 50
Period size: 4 Copynumber: 18.2 Consensus size: 4
7241190 CCTAGCCTTG
* *
7241200 TCTT TCTC T-TT TCTT TCTT TCCT T-TT T-TT TCTTT TCTT TCTT TCCTT
1 TCTT TCTT TCTT TCTT TCTT TCTT TCTT TCTT TC-TT TCTT TCTT T-CTT
*
7241247 TCTGTT TCGTTT TGTT TCTT TCTT TCTT T
1 TC--TT TC--TT TCTT TCTT TCTT TCTT T
7241276 ATTCATTTAC
Statistics
Matches: 58, Mismatches: 8, Indels: 12
0.74 0.10 0.15
Matches are distributed among these distances:
3 7 0.12
4 36 0.62
5 8 0.14
6 7 0.12
ACGTcount: A:0.00, C:0.22, G:0.04, T:0.74
Consensus pattern (4 bp):
TCTT
Found at i:7241311 original size:19 final size:19
Alignment explanation
Indices: 7241287--7241333 Score: 58
Period size: 19 Copynumber: 2.5 Consensus size: 19
7241277 TTCATTTACT
* *
7241287 TATTTATTTTGTTTTATTA
1 TATTTATTTTATTATATTA
*
7241306 TATTTACTTTATTATATTA
1 TATTTATTTTATTATATTA
*
7241325 TATATATTT
1 TATTTATTT
7241334 ACTTAAATAT
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
19 23 1.00
ACGTcount: A:0.28, C:0.02, G:0.02, T:0.68
Consensus pattern (19 bp):
TATTTATTTTATTATATTA
Found at i:7252114 original size:4 final size:4
Alignment explanation
Indices: 7252101--7252131 Score: 55
Period size: 4 Copynumber: 8.0 Consensus size: 4
7252091 TCATTTTTTG
7252101 AATT -ATT AATT AATT AATT AATT AATT AATT
1 AATT AATT AATT AATT AATT AATT AATT AATT
7252132 GAAGTTTGAA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
3 3 0.12
4 23 0.88
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (4 bp):
AATT
Found at i:7255147 original size:29 final size:30
Alignment explanation
Indices: 7255107--7255167 Score: 79
Period size: 30 Copynumber: 2.1 Consensus size: 30
7255097 ATTTCTGGGC
* *
7255107 TTTAGGACAAAAGT-GTAATTATGTAAAAG
1 TTTAGGACAAAAATCATAATTATGTAAAAG
* *
7255136 TTTAGGAGAAAAATCATAATTTTGTAAAAG
1 TTTAGGACAAAAATCATAATTATGTAAAAG
7255166 TT
1 TT
7255168 AGAGTCGAGG
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
29 12 0.44
30 15 0.56
ACGTcount: A:0.44, C:0.03, G:0.18, T:0.34
Consensus pattern (30 bp):
TTTAGGACAAAAATCATAATTATGTAAAAG
Found at i:7255614 original size:50 final size:50
Alignment explanation
Indices: 7255504--7255753 Score: 297
Period size: 50 Copynumber: 4.9 Consensus size: 50
7255494 ACATTAAGAG
* *
7255504 GATGAGA--TCCCATGTAAGACCATGTTTGGGACATGGCATTGGCATCATAGA
1 GATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA-C--CGA
*
7255555 GATTATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGA
1 G---ATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGA
* *
7255608 GATGAGAGGTCGCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGA
1 GATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGA
* ** * *
7255658 AATGAGAGGTCCCCCGTAAGACCATGTCTGGGACATGGCATGGGCACCTA
1 GATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGA
* ** * *
7255708 TATGAGAACTCCCATGTAAGACCATATCTGGGATATGGCATTGGCA
1 GATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA
7255754 GTACAAGAAA
Statistics
Matches: 175, Mismatches: 19, Indels: 11
0.85 0.09 0.05
Matches are distributed among these distances:
50 129 0.74
51 1 0.01
53 3 0.02
54 6 0.03
55 1 0.01
56 35 0.20
ACGTcount: A:0.27, C:0.21, G:0.30, T:0.22
Consensus pattern (50 bp):
GATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGA
Found at i:7260354 original size:3 final size:3
Alignment explanation
Indices: 7260346--7260416 Score: 124
Period size: 3 Copynumber: 23.7 Consensus size: 3
7260336 TATTTTCTCC
7260346 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* *
7260394 TTA TTA TTA TTG TAA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TT
7260417 TTCATGTACA
Statistics
Matches: 64, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 64 1.00
ACGTcount: A:0.32, C:0.00, G:0.01, T:0.66
Consensus pattern (3 bp):
TTA
Found at i:7263036 original size:24 final size:24
Alignment explanation
Indices: 7263009--7263054 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
7262999 AGAACAATCC
* *
7263009 CAAAAGGAAATGCAGGAGCAGCTT
1 CAAAAGCAAATGAAGGAGCAGCTT
*
7263033 CAAAAGCAAATGAATGAGCAGC
1 CAAAAGCAAATGAAGGAGCAGC
7263055 AAAAAATGAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.46, C:0.17, G:0.26, T:0.11
Consensus pattern (24 bp):
CAAAAGCAAATGAAGGAGCAGCTT
Found at i:7265675 original size:14 final size:14
Alignment explanation
Indices: 7265658--7265699 Score: 57
Period size: 14 Copynumber: 2.9 Consensus size: 14
7265648 TGAAAGTGAT
7265658 AAAAAAGAAAAGGA
1 AAAAAAGAAAAGGA
*
7265672 AAAAAAGAAAAAGA
1 AAAAAAGAAAAGGA
*
7265686 AAAGAAAAAAAAGG
1 AAA-AAAGAAAAGG
7265700 TGAGGCCAAG
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
14 16 0.67
15 8 0.33
ACGTcount: A:0.81, C:0.00, G:0.19, T:0.00
Consensus pattern (14 bp):
AAAAAAGAAAAGGA
Found at i:7265684 original size:20 final size:20
Alignment explanation
Indices: 7265659--7265698 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
7265649 GAAAGTGATA
*
7265659 AAAAAGAAAAGGAAAAAAAG
1 AAAAAGAAAAGAAAAAAAAG
7265679 AAAAAGAAAAGAAAAAAAAG
1 AAAAAGAAAAGAAAAAAAAG
7265699 GTGAGGCCAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.82, C:0.00, G:0.17, T:0.00
Consensus pattern (20 bp):
AAAAAGAAAAGAAAAAAAAG
Found at i:7267192 original size:132 final size:132
Alignment explanation
Indices: 7266955--7267452 Score: 766
Period size: 132 Copynumber: 3.8 Consensus size: 132
7266945 TTGACAGCGA
* *
7266955 AGCAGATCGAATATGGCGGATTTTACCTCCCTGTGGTTACAGTGGAGTAAATTGAAGCCAGTAAT
1 AGCAGATCGAAGATGGCGAATTTTACCTCCCTGTGGTTACAGTGGAGTAAATTGAAGCCAGTAAT
* * *
7267020 TCTACTTTCCTGGGCAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAATAGT
66 TCTACTTCCCTGGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGTAGT
7267085 GG
131 GG
* * *
7267087 AGCAGATCGAAGATGGCGAATTTTACCTCTCTGTGGTTATAGTGGAGTACATTGAAGCCAGTAAT
1 AGCAGATCGAAGATGGCGAATTTTACCTCCCTGTGGTTACAGTGGAGTAAATTGAAGCCAGTAAT
* *
7267152 TCTACTTCCCTAGACAACAATGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGTAGT
66 TCTACTTCCCTGGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGTAGT
*
7267217 AG
131 GG
7267219 AGCAGATCGAAGATGGC-AGATTTTACCTCCCTGTGGTTACAGTGGAGTAAATTGAAGCCAGTAA
1 AGCAGATCGAAGATGGCGA-ATTTTACCTCCCTGTGGTTACAGTGGAGTAAATTGAAGCCAGTAA
*
7267283 TTCTACTTCCCTGGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGCAG
65 TTCTACTTCCCTGGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGTAG
7267348 TGG
130 TGG
* * * * *
7267351 AGTAGATCGAAGATGGTGGATTTTACCTCCCTGTGGTTACAGTAGAGTACATTGAAGCCAGTAAT
1 AGCAGATCGAAGATGGCGAATTTTACCTCCCTGTGGTTACAGTGGAGTAAATTGAAGCCAGTAAT
* * * * *
7267416 CCTA-TCTCCCTGGTCAGCAGTGGAATAGGTTAAAGAT
66 TCTACT-TCCCTGGACAACAGTGGAATAGATTGAAGAT
7267453 AAGTCTTATC
Statistics
Matches: 335, Mismatches: 28, Indels: 6
0.91 0.08 0.02
Matches are distributed among these distances:
131 2 0.01
132 333 0.99
ACGTcount: A:0.30, C:0.18, G:0.23, T:0.29
Consensus pattern (132 bp):
AGCAGATCGAAGATGGCGAATTTTACCTCCCTGTGGTTACAGTGGAGTAAATTGAAGCCAGTAAT
TCTACTTCCCTGGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGTAGT
GG
Found at i:7277229 original size:35 final size:36
Alignment explanation
Indices: 7277190--7277259 Score: 115
Period size: 36 Copynumber: 2.0 Consensus size: 36
7277180 GTTAGACTAG
7277190 CTCTTATGAGCAT-TGGTGTGTTTCGGATGGATTGA
1 CTCTTATGAGCATCTGGTGTGTTTCGGATGGATTGA
* *
7277225 CTCTTATGAGCATCTGGTGTGTTTTGGTTGGATTG
1 CTCTTATGAGCATCTGGTGTGTTTCGGATGGATTG
7277260 TCGATGTACT
Statistics
Matches: 32, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
35 13 0.41
36 19 0.59
ACGTcount: A:0.14, C:0.11, G:0.31, T:0.43
Consensus pattern (36 bp):
CTCTTATGAGCATCTGGTGTGTTTCGGATGGATTGA
Found at i:7277257 original size:36 final size:36
Alignment explanation
Indices: 7277167--7277259 Score: 127
Period size: 35 Copynumber: 2.6 Consensus size: 36
7277157 ACTCTCTATT
* *
7277167 TTGGTGTGTTTTGGTTAGACT-AGCTCTTATGAGCA
1 TTGGTGTGTTTTGGTTGGATTGAGCTCTTATGAGCA
* *
7277202 TTGGTGTGTTTCGGATGGATTGA-CTCTTATGAGCA
1 TTGGTGTGTTTTGGTTGGATTGAGCTCTTATGAGCA
7277237 TCTGGTGTGTTTTGGTTGGATTG
1 T-TGGTGTGTTTTGGTTGGATTG
7277260 TCGATGTACT
Statistics
Matches: 50, Mismatches: 6, Indels: 3
0.85 0.10 0.05
Matches are distributed among these distances:
35 30 0.60
36 20 0.40
ACGTcount: A:0.14, C:0.10, G:0.32, T:0.44
Consensus pattern (36 bp):
TTGGTGTGTTTTGGTTGGATTGAGCTCTTATGAGCA
Found at i:7277959 original size:19 final size:19
Alignment explanation
Indices: 7277935--7277988 Score: 99
Period size: 19 Copynumber: 2.8 Consensus size: 19
7277925 AATTTTTGAG
7277935 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
7277954 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
*
7277973 GATATGTAATCTTAGA
1 GATATGCAATCTTAGA
7277989 AGATATGATT
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
19 34 1.00
ACGTcount: A:0.37, C:0.09, G:0.17, T:0.37
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:7278014 original size:22 final size:22
Alignment explanation
Indices: 7277948--7278011 Score: 80
Period size: 19 Copynumber: 3.0 Consensus size: 22
7277938 ATGCAATCTT
*
7277948 AGATATGATATGCAATCTT---
1 AGATATGATATGTAATCTTAGA
7277967 AGATATGATATGTAATCTTAGA
1 AGATATGATATGTAATCTTAGA
*
7277989 AGATATGATTTTGTAATCTTAGA
1 AGATATGA-TATGTAATCTTAGA
7278012 GATTTAATTT
Statistics
Matches: 39, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
19 18 0.46
22 8 0.21
23 13 0.33
ACGTcount: A:0.38, C:0.06, G:0.17, T:0.39
Consensus pattern (22 bp):
AGATATGATATGTAATCTTAGA
Found at i:7278021 original size:22 final size:23
Alignment explanation
Indices: 7277977--7278021 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
7277967 AGATATGATA
*
7277977 TGTAATCTTAGAAGATATGATTT
1 TGTAATCTTAGAAGATATAATTT
*
7278000 TGTAATCTTAG-AGATTTAATTT
1 TGTAATCTTAGAAGATATAATTT
7278022 GTAGATACCC
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
22 9 0.45
23 11 0.55
ACGTcount: A:0.33, C:0.04, G:0.16, T:0.47
Consensus pattern (23 bp):
TGTAATCTTAGAAGATATAATTT
Found at i:7278355 original size:21 final size:21
Alignment explanation
Indices: 7278310--7278355 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
7278300 TTAAGTTTTC
* *
7278310 TTTATTTTTTTAATTTACCAT
1 TTTATTTTTTTAAATTACCAA
7278331 TTTATTTATTTTAAATT-CCAA
1 TTTATTT-TTTTAAATTACCAA
7278352 TTTA
1 TTTA
7278356 ATCTTTTTGA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
21 14 0.64
22 8 0.36
ACGTcount: A:0.28, C:0.09, G:0.00, T:0.63
Consensus pattern (21 bp):
TTTATTTTTTTAAATTACCAA
Found at i:7278632 original size:26 final size:24
Alignment explanation
Indices: 7278603--7278651 Score: 71
Period size: 24 Copynumber: 2.0 Consensus size: 24
7278593 CATATATATA
7278603 TATATTTTTTTAAACGAATATTTTCC
1 TATA-TTTTTT-AACGAATATTTTCC
*
7278629 TATATTTTTTAATGAATATTTTC
1 TATATTTTTTAACGAATATTTTC
7278652 ATATTTATAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 12 0.55
25 6 0.27
26 4 0.18
ACGTcount: A:0.31, C:0.08, G:0.04, T:0.57
Consensus pattern (24 bp):
TATATTTTTTAACGAATATTTTCC
Found at i:7279436 original size:98 final size:98
Alignment explanation
Indices: 7279316--7279510 Score: 345
Period size: 98 Copynumber: 2.0 Consensus size: 98
7279306 TTAAAAATAA
* * *
7279316 TAAAGGAAATATTCCGAATTTGGGATTTTAAAGGAATTGTGTCCTAACGTATTGGGTGTGATTTC
1 TAAAGGAAATATTCCGAATTTGGGATTCTAAAGGAATCGTGCCCTAACGTATTGGGTGTGATTTC
7279381 TTAAATCTTGGATAAGTGGATGTTCTTTTAAAG
66 TTAAATCTTGGATAAGTGGATGTTCTTTTAAAG
* *
7279414 TAAAGGAAATATTCCGAGTTTGGGATTCTAGAGGAATCGTGCCCTAACGTATTGGGTGTGATTTC
1 TAAAGGAAATATTCCGAATTTGGGATTCTAAAGGAATCGTGCCCTAACGTATTGGGTGTGATTTC
7279479 TTAAATCTTGGATAAGTGGATGTTCTTTTAAA
66 TTAAATCTTGGATAAGTGGATGTTCTTTTAAA
7279511 ATTTTATTGT
Statistics
Matches: 92, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
98 92 1.00
ACGTcount: A:0.29, C:0.10, G:0.24, T:0.37
Consensus pattern (98 bp):
TAAAGGAAATATTCCGAATTTGGGATTCTAAAGGAATCGTGCCCTAACGTATTGGGTGTGATTTC
TTAAATCTTGGATAAGTGGATGTTCTTTTAAAG
Found at i:7281071 original size:19 final size:20
Alignment explanation
Indices: 7281047--7281093 Score: 71
Period size: 19 Copynumber: 2.5 Consensus size: 20
7281037 GGGTTTTATT
7281047 TTATTTTATATTAATATA-A
1 TTATTTTATATTAATATAGA
*
7281066 TTATTTAATATTAATATAGA
1 TTATTTTATATTAATATAGA
7281086 TT-TTTTAT
1 TTATTTTAT
7281094 TTATTTTTTA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
19 22 0.88
20 3 0.12
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.60
Consensus pattern (20 bp):
TTATTTTATATTAATATAGA
Found at i:7281116 original size:24 final size:24
Alignment explanation
Indices: 7281041--7281117 Score: 59
Period size: 24 Copynumber: 3.2 Consensus size: 24
7281031 GAGGAGGGGT
* *
7281041 TTTATTT-TATTTTATATTAATATA
1 TTTATTTATTTTTTATAATAAT-TA
* * * * *
7281065 ATTATTTAATATTAAT-ATAGATTT
1 TTTATTTATTTTTTATAATA-ATTA
7281089 TTTATTTATTTTTTATAATAATTA
1 TTTATTTATTTTTTATAATAATTA
7281113 TTTAT
1 TTTAT
7281118 AATTTATATA
Statistics
Matches: 38, Mismatches: 12, Indels: 6
0.68 0.21 0.11
Matches are distributed among these distances:
24 29 0.76
25 9 0.24
ACGTcount: A:0.35, C:0.00, G:0.01, T:0.64
Consensus pattern (24 bp):
TTTATTTATTTTTTATAATAATTA
Found at i:7281143 original size:19 final size:20
Alignment explanation
Indices: 7281090--7281131 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
7281080 TATAGATTTT
**
7281090 TTATTTATTTTTTATAATAA
1 TTATTTATAATTTATAATAA
7281110 TTATTTATAATTTAT-ATAA
1 TTATTTATAATTTATAATAA
7281129 TTA
1 TTA
7281132 ATTTTACTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
19 7 0.35
20 13 0.65
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (20 bp):
TTATTTATAATTTATAATAA
Found at i:7285193 original size:3 final size:3
Alignment explanation
Indices: 7285185--7285212 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
7285175 GTATCTACCC
7285185 CTT CTT CTT CTT CTT CTT CTT CTT CTT C
1 CTT CTT CTT CTT CTT CTT CTT CTT CTT C
7285213 AAATAAACCT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.00, C:0.36, G:0.00, T:0.64
Consensus pattern (3 bp):
CTT
Found at i:7289620 original size:7 final size:7
Alignment explanation
Indices: 7289603--7289634 Score: 57
Period size: 7 Copynumber: 4.7 Consensus size: 7
7289593 TTCCAAATTT
7289603 TTAAT-A
1 TTAATAA
7289609 TTAATAA
1 TTAATAA
7289616 TTAATAA
1 TTAATAA
7289623 TTAATAA
1 TTAATAA
7289630 TTAAT
1 TTAAT
7289635 TTATTTATAG
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
6 5 0.20
7 20 0.80
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (7 bp):
TTAATAA
Found at i:7290210 original size:19 final size:19
Alignment explanation
Indices: 7290182--7290244 Score: 74
Period size: 19 Copynumber: 3.3 Consensus size: 19
7290172 AAAATAAATC
*
7290182 AAAATAAATTTCAAAAATTT
1 AAAAT-AATTTTAAAAATTT
*
7290202 AAAATAATTTTTAAAATTT
1 AAAATAATTTTAAAAATTT
7290221 AAAAT-ATTTATAAAAATTT
1 AAAATAATTT-TAAAAATTT
*
7290240 TAAAT
1 AAAAT
7290245 TTTGTATTTT
Statistics
Matches: 38, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
18 4 0.11
19 29 0.76
20 5 0.13
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.41
Consensus pattern (19 bp):
AAAATAATTTTAAAAATTT
Found at i:7290229 original size:28 final size:28
Alignment explanation
Indices: 7290187--7290240 Score: 76
Period size: 28 Copynumber: 1.9 Consensus size: 28
7290177 AAATCAAAAT
7290187 AAATTTCAAAAATTTA-AAATAATTTTTA
1 AAATTTCAAAAATTTATAAA-AATTTTTA
7290215 AAATTT-AAAATATTTATAAAAATTTT
1 AAATTTCAAAA-ATTTATAAAAATTTT
7290241 AAATTTTGTA
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
27 4 0.17
28 17 0.71
29 3 0.12
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.44
Consensus pattern (28 bp):
AAATTTCAAAAATTTATAAAAATTTTTA
Found at i:7290243 original size:9 final size:9
Alignment explanation
Indices: 7290187--7290243 Score: 53
Period size: 9 Copynumber: 6.1 Consensus size: 9
7290177 AAATCAAAAT
*
7290187 AAATTTCAA
1 AAATTTTAA
*
7290196 AAATTTAAA
1 AAATTTTAA
*
7290205 ATAATTTTTA
1 A-AATTTTAA
7290215 AAA-TTTAA
1 AAATTTTAA
7290223 AATATTTATAA
1 AA-ATTT-TAA
7290234 AAATTTTAA
1 AAATTTTAA
7290243 A
1 A
7290244 TTTTGTATTT
Statistics
Matches: 40, Mismatches: 4, Indels: 8
0.77 0.08 0.15
Matches are distributed among these distances:
8 6 0.15
9 16 0.40
10 13 0.32
11 5 0.12
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.42
Consensus pattern (9 bp):
AAATTTTAA
Found at i:7290337 original size:17 final size:17
Alignment explanation
Indices: 7290295--7290339 Score: 56
Period size: 17 Copynumber: 2.6 Consensus size: 17
7290285 TAAAAAATAT
7290295 ATAAAAATTTTTGAAAA
1 ATAAAAATTTTTGAAAA
*
7290312 TTAAAAATTTTT-ATAAA
1 ATAAAAATTTTTGA-AAA
*
7290329 ATAATAATTTT
1 ATAAAAATTTT
7290340 GGAATCTAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
16 1 0.04
17 23 0.96
ACGTcount: A:0.53, C:0.00, G:0.02, T:0.44
Consensus pattern (17 bp):
ATAAAAATTTTTGAAAA
Found at i:7290656 original size:21 final size:21
Alignment explanation
Indices: 7290632--7290671 Score: 64
Period size: 21 Copynumber: 1.9 Consensus size: 21
7290622 ACCTTATCTA
7290632 AAGTTAAAA-GTCAAAACTATT
1 AAGTTAAAAGGT-AAAACTATT
7290653 AAGTTAAAAGGTAAAACTA
1 AAGTTAAAAGGTAAAACTA
7290672 CGTTGTTTTG
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 16 0.89
22 2 0.11
ACGTcount: A:0.55, C:0.07, G:0.12, T:0.25
Consensus pattern (21 bp):
AAGTTAAAAGGTAAAACTATT
Found at i:7291102 original size:3 final size:3
Alignment explanation
Indices: 7291096--7291162 Score: 134
Period size: 3 Copynumber: 22.3 Consensus size: 3
7291086 CTTTTTTTTC
7291096 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
7291144 TCT TCT TCT TCT TCT TCT T
1 TCT TCT TCT TCT TCT TCT T
7291163 TTTTCACCAA
Statistics
Matches: 64, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 64 1.00
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (3 bp):
TCT
Found at i:7293734 original size:45 final size:45
Alignment explanation
Indices: 7293594--7293734 Score: 130
Period size: 42 Copynumber: 3.1 Consensus size: 45
7293584 GTTGTGTATT
*
7293594 CACAACTACTAGCAACATATTAACCTACAAGCATTTGTGGTATATC
1 CACAACTACTAGCAACATATTAACCTACAA-CACTTGTGGTATATC
* * * *
7293640 CACAACTTATACTGGCAAC-TATT-ATCTGCAAACCCGTTGT-GTAT-T-
1 CACAAC---TACTAGCAACATATTAACCTAC-AACAC-TTGTGGTATATC
* *
7293685 CACAACTACTAACAACATATTAACCTACAACACTTGTGGTTTATC
1 CACAACTACTAGCAACATATTAACCTACAACACTTGTGGTATATC
7293730 CACAA
1 CACAA
7293735 TGTAAAGTGT
Statistics
Matches: 74, Mismatches: 11, Indels: 21
0.70 0.10 0.20
Matches are distributed among these distances:
42 12 0.16
43 11 0.15
44 5 0.07
45 11 0.15
46 7 0.09
47 9 0.12
48 10 0.14
49 9 0.12
ACGTcount: A:0.35, C:0.26, G:0.10, T:0.29
Consensus pattern (45 bp):
CACAACTACTAGCAACATATTAACCTACAACACTTGTGGTATATC
Found at i:7294989 original size:5 final size:5
Alignment explanation
Indices: 7294981--7295007 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
7294971 TTAAATTCAA
7294981 GGTGG GGTGG GGTGG GGTGG GGTGG GG
1 GGTGG GGTGG GGTGG GGTGG GGTGG GG
7295008 CAAGGTGGAG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.00, C:0.00, G:0.81, T:0.19
Consensus pattern (5 bp):
GGTGG
Found at i:7309719 original size:19 final size:20
Alignment explanation
Indices: 7309677--7309719 Score: 52
Period size: 20 Copynumber: 2.2 Consensus size: 20
7309667 ATTACCAGCT
* * *
7309677 CAAAATAATTTTTGGATTTT
1 CAAAATAATTTTCGGATATC
7309697 CAAAATAATTTTCGGA-ATC
1 CAAAATAATTTTCGGATATC
7309716 CAAA
1 CAAA
7309720 CATGAGAATA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
19 5 0.25
20 15 0.75
ACGTcount: A:0.42, C:0.12, G:0.09, T:0.37
Consensus pattern (20 bp):
CAAAATAATTTTCGGATATC
Found at i:7312547 original size:3 final size:3
Alignment explanation
Indices: 7312541--7312581 Score: 64
Period size: 3 Copynumber: 13.7 Consensus size: 3
7312531 ACTAATTAGT
* *
7312541 TTA TTA TTA TTA TTA TTG TTA TTA TTA TTA TTA TTG TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
7312582 TCTCTTTTAT
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
3 34 1.00
ACGTcount: A:0.27, C:0.00, G:0.05, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:7317802 original size:17 final size:17
Alignment explanation
Indices: 7317780--7317823 Score: 79
Period size: 17 Copynumber: 2.6 Consensus size: 17
7317770 CTAAGTTGAT
*
7317780 TAATTAAAATCTCTTTC
1 TAATTAAAACCTCTTTC
7317797 TAATTAAAACCTCTTTC
1 TAATTAAAACCTCTTTC
7317814 TAATTAAAAC
1 TAATTAAAAC
7317824 ACATATTGTC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
17 26 1.00
ACGTcount: A:0.41, C:0.18, G:0.00, T:0.41
Consensus pattern (17 bp):
TAATTAAAACCTCTTTC
Found at i:7318470 original size:30 final size:30
Alignment explanation
Indices: 7318417--7318473 Score: 78
Period size: 30 Copynumber: 1.9 Consensus size: 30
7318407 CACTGGCTGG
* *
7318417 CACAAGGGCGTGTGTCCAGCCCGTGTGTCC
1 CACAAGGGCGTGTGCCCAACCCGTGTGTCC
* *
7318447 CACATGGGTGTGTGCCCAACCCGTGTG
1 CACAAGGGCGTGTGCCCAACCCGTGTG
7318474 GCTTCTGAAA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
30 23 1.00
ACGTcount: A:0.14, C:0.32, G:0.33, T:0.21
Consensus pattern (30 bp):
CACAAGGGCGTGTGCCCAACCCGTGTGTCC
Found at i:7324247 original size:135 final size:135
Alignment explanation
Indices: 7324005--7324270 Score: 424
Period size: 135 Copynumber: 2.0 Consensus size: 135
7323995 CCAATTTACT
* * * * *
7324005 TGCAGGGGAAGAGTTTCAACTTTGCTTGGCAGTGATTTCCGAGATACAATGGACCGATTAATGAC
1 TGCAGGGGAAGAGTTTCAACTTTACTTGACAGTGATTTCCGAGAGAAAATGAACCGATTAATGAC
*
7324070 TTCTCGTGTACAAATGCAAGCGGATGAGGCTGAAAGTCAACAAGAAGTGGATGATAAGGAAGGAA
66 TTCTCGTGTACAAATGCAAGCGGATGAGGCTGAAAGTCAACAAGAAGTGGAGGATAAGGAAGGAA
7324135 TTATA
131 TTATA
* *
7324140 TGCAGGGGAAGAGTTTCAACTTTATTTGACAGTGATTTCCTAGAGAAAATGAACCGATTAATGAC
1 TGCAGGGGAAGAGTTTCAACTTTACTTGACAGTGATTTCCGAGAGAAAATGAACCGATTAATGAC
* ** *
7324205 TTCTCGTGTACAAATGCAAGCTGATGTTGCTGAAAGTCAACAAGAAGTTGAGGATAAGGAAGGAA
66 TTCTCGTGTACAAATGCAAGCGGATGAGGCTGAAAGTCAACAAGAAGTGGAGGATAAGGAAGGAA
7324270 T
131 T
7324271 GGTCCAACCA
Statistics
Matches: 119, Mismatches: 12, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
135 119 1.00
ACGTcount: A:0.34, C:0.14, G:0.27, T:0.26
Consensus pattern (135 bp):
TGCAGGGGAAGAGTTTCAACTTTACTTGACAGTGATTTCCGAGAGAAAATGAACCGATTAATGAC
TTCTCGTGTACAAATGCAAGCGGATGAGGCTGAAAGTCAACAAGAAGTGGAGGATAAGGAAGGAA
TTATA
Found at i:7324317 original size:18 final size:18
Alignment explanation
Indices: 7324290--7324401 Score: 133
Period size: 18 Copynumber: 6.4 Consensus size: 18
7324280 AGTGTCTTAC
*
7324290 GAAGAAGAAGAAGAAGAA
1 GAAGAGGAAGAAGAAGAA
7324308 GAAGAGGAAGAAGAAGAA
1 GAAGAGGAAGAAGAAGAA
7324326 G-A-A-GAAGAAGAAGAA
1 GAAGAGGAAGAAGAAGAA
*
7324341 GAAGAAGAAGAAGAAGAA
1 GAAGAGGAAGAAGAAGAA
*
7324359 GAAGAGGAAGAGGAAGAA
1 GAAGAGGAAGAAGAAGAA
* * * *
7324377 GAATACGACGATGAAGAA
1 GAAGAGGAAGAAGAAGAA
7324395 GAA-AGGA
1 GAAGAGGA
7324402 GCTTAAGCAG
Statistics
Matches: 83, Mismatches: 8, Indels: 7
0.85 0.08 0.07
Matches are distributed among these distances:
15 13 0.16
16 2 0.02
17 5 0.06
18 63 0.76
ACGTcount: A:0.61, C:0.02, G:0.36, T:0.02
Consensus pattern (18 bp):
GAAGAGGAAGAAGAAGAA
Found at i:7324397 original size:3 final size:3
Alignment explanation
Indices: 7324290--7324379 Score: 153
Period size: 3 Copynumber: 30.0 Consensus size: 3
7324280 AGTGTCTTAC
*
7324290 GAA GAA GAA GAA GAA GAA GAA GAG GAA GAA GAA GAA GAA GAA GAA GAA
1 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA
* *
7324338 GAA GAA GAA GAA GAA GAA GAA GAA GAG GAA GAG GAA GAA GAA
1 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA
7324380 TACGACGATG
Statistics
Matches: 81, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 81 1.00
ACGTcount: A:0.63, C:0.00, G:0.37, T:0.00
Consensus pattern (3 bp):
GAA
Found at i:7325944 original size:19 final size:19
Alignment explanation
Indices: 7325920--7325957 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
7325910 ACTGACACGT
7325920 GCTGCATCACATAGATTAA
1 GCTGCATCACATAGATTAA
7325939 GCTGCATCACATAGATTAA
1 GCTGCATCACATAGATTAA
7325958 AATATTAAGT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.37, C:0.21, G:0.16, T:0.26
Consensus pattern (19 bp):
GCTGCATCACATAGATTAA
Found at i:7327215 original size:10 final size:10
Alignment explanation
Indices: 7327196--7327248 Score: 58
Period size: 9 Copynumber: 5.6 Consensus size: 10
7327186 TTTATTGTAA
7327196 TTTTAA-ATT
1 TTTTAATATT
7327205 TTTTAATATT
1 TTTTAATATT
* *
7327215 TTAT-GTATT
1 TTTTAATATT
7327224 TTTT-ATATT
1 TTTTAATATT
*
7327233 TTTTTATATT
1 TTTTAATATT
7327243 TTTTAA
1 TTTTAA
7327249 GCAGAAGAAT
Statistics
Matches: 37, Mismatches: 5, Indels: 3
0.82 0.11 0.07
Matches are distributed among these distances:
9 21 0.57
10 16 0.43
ACGTcount: A:0.26, C:0.00, G:0.02, T:0.72
Consensus pattern (10 bp):
TTTTAATATT
Done.