Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr08 ID=Chr08-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 57128820
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 677448 characters in sequence are not A, C, G, or T
File 28 of 190
Found at i:7944777 original size:165 final size:164
Alignment explanation
Indices: 7944491--7944851 Score: 589
Period size: 165 Copynumber: 2.2 Consensus size: 164
7944481 AGATTTTATT
* * *
7944491 ATTAGCGGCACTTTTTCAAAAACGCCGCTAAAGACACGAGCATTAGCCGCGCTTTCTCAAAAATG
1 ATTAGCGGCGCTTTCTCAAAAACGCCGCTAAAGACACGAGCATTAGCCGCGCTTTCTCAAAAACG
7944556 CCGCTAAAGCCCCGAGCATTAGCAGCGCCTTCTCAAAAACGCCGCTAAAGCCCCGAGCATTAGCG
66 CCGCTAAAGCCCCGAGCATTAGCAGCGCCTTCTCAAAAACGCCGCTAAAGCCCCGAGCATTAGCG
* *
7944621 ACGCTTTCTCAAAAACTACGCTAAAGCCCCGAGC
131 ACGCTTTCTCAAAAACGACGCTAAAGCCCCAAGC
* *
7944655 ATTAGCGGCGCTTTCTCAAAAACGCCGCTAAAGGCCCGAGCATTAG-CGACGCTTTCTCAAAAAA
1 ATTAGCGGCGCTTTCTCAAAAACGCCGCTAAAGACACGAGCATTAGCCG-CGCTTTCTC-AAAAA
* *
7944719 CGCCGCTAAAGCCCCGAGCATTAGCGGCGCTTTCTCAAAAACGCCGCTAAAGCCCCGAGCATTAG
64 CGCCGCTAAAGCCCCGAGCATTAGCAGCGCCTTCTCAAAAACGCCGCTAAAGCCCCGAGCATTAG
* *
7944784 CGGCGCTTTCTCAAAAACGCCGCTAAAGCCCCAAGC
129 CGACGCTTTCTCAAAAACGACGCTAAAGCCCCAAGC
*
7944820 ATTAGCGGCGCTTTCTCAAAAACGCCTCTAAA
1 ATTAGCGGCGCTTTCTCAAAAACGCCGCTAAA
7944852 TGCCTCAAAA
Statistics
Matches: 183, Mismatches: 12, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
163 2 0.01
164 51 0.28
165 130 0.71
ACGTcount: A:0.30, C:0.32, G:0.20, T:0.18
Consensus pattern (164 bp):
ATTAGCGGCGCTTTCTCAAAAACGCCGCTAAAGACACGAGCATTAGCCGCGCTTTCTCAAAAACG
CCGCTAAAGCCCCGAGCATTAGCAGCGCCTTCTCAAAAACGCCGCTAAAGCCCCGAGCATTAGCG
ACGCTTTCTCAAAAACGACGCTAAAGCCCCAAGC
Found at i:7945720 original size:10 final size:10
Alignment explanation
Indices: 7945697--7945730 Score: 50
Period size: 10 Copynumber: 3.4 Consensus size: 10
7945687 TCAAATCTAC
*
7945697 TAAAGCTAAT
1 TAAAGTTAAT
*
7945707 TAAAGTTAAA
1 TAAAGTTAAT
7945717 TAAAGTTAAT
1 TAAAGTTAAT
7945727 TAAA
1 TAAA
7945731 TTAGTTTAAT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
10 21 1.00
ACGTcount: A:0.56, C:0.03, G:0.09, T:0.32
Consensus pattern (10 bp):
TAAAGTTAAT
Found at i:7946401 original size:30 final size:30
Alignment explanation
Indices: 7946360--7946441 Score: 137
Period size: 30 Copynumber: 2.7 Consensus size: 30
7946350 ATGAGTAACT
*
7946360 TGGTGTAATTTTAGCTTGTGTGAGCAACCC
1 TGGTATAATTTTAGCTTGTGTGAGCAACCC
*
7946390 TGGTATAATTTTAGCTTGTGTGAGCAACCT
1 TGGTATAATTTTAGCTTGTGTGAGCAACCC
*
7946420 TGATATAATTTTAGCTTGTGTG
1 TGGTATAATTTTAGCTTGTGTG
7946442 TATCTGAGTC
Statistics
Matches: 49, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 49 1.00
ACGTcount: A:0.22, C:0.12, G:0.24, T:0.41
Consensus pattern (30 bp):
TGGTATAATTTTAGCTTGTGTGAGCAACCC
Found at i:7947391 original size:95 final size:95
Alignment explanation
Indices: 7947280--7947464 Score: 298
Period size: 95 Copynumber: 1.9 Consensus size: 95
7947270 AATTGAACAA
* * * * *
7947280 GCTTGAATGATGAATGACTGAATTGTATGATATTGAATGGTTGGTTTAGATGGTTATATGCTTGA
1 GCTTGAATGATGAATGACAGAATTGTATGATATTGAATGATTGGTTTAAATGGCTATATACTTGA
* *
7947345 ATAGGTTGATATTGGCATGGTATAAAGCAT
66 ATAGGTTGATACTGCCATGGTATAAAGCAT
7947375 GCTTGAATGATGAATGACAGAATTGTATGATATTGAATGATTGGTTTAAATGGCTATATACTTGA
1 GCTTGAATGATGAATGACAGAATTGTATGATATTGAATGATTGGTTTAAATGGCTATATACTTGA
*
7947440 ATTGGTTGATACTGCCATGGTATAA
66 ATAGGTTGATACTGCCATGGTATAA
7947465 TAACATATAA
Statistics
Matches: 82, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
95 82 1.00
ACGTcount: A:0.31, C:0.06, G:0.25, T:0.37
Consensus pattern (95 bp):
GCTTGAATGATGAATGACAGAATTGTATGATATTGAATGATTGGTTTAAATGGCTATATACTTGA
ATAGGTTGATACTGCCATGGTATAAAGCAT
Found at i:7957869 original size:71 final size:71
Alignment explanation
Indices: 7957732--7957878 Score: 161
Period size: 71 Copynumber: 2.1 Consensus size: 71
7957722 TGTTGAGCGA
* * * *
7957732 AAAACATCATCGGTTTATCTGACCAATGCAGGGCACAACTATTGTTAGTTTATCCGACTGGCGCT
1 AAAACATCATCGGTTTAACTAACCAATGCAGGGCACAACTATTGTTAGTATATCCGACTAGCGCT
*
7957797 GGGTGC
66 GGGCGC
** * * * ** *
7957803 AAAACATTGTCGGTTTAACTAACCAGTGCAGGGCACAACTATT-TTCTGTATATCTGGTTAGTGC
1 AAAACATCATCGGTTTAACTAACCAATGCAGGGCACAACTATTGTT-AGTATATCCGACTAGCGC
7957867 TGGGCGC
65 TGGGCGC
7957874 AAAAC
1 AAAAC
7957879 CTTACTACGA
Statistics
Matches: 62, Mismatches: 13, Indels: 2
0.81 0.17 0.03
Matches are distributed among these distances:
70 2 0.03
71 60 0.97
ACGTcount: A:0.27, C:0.21, G:0.23, T:0.29
Consensus pattern (71 bp):
AAAACATCATCGGTTTAACTAACCAATGCAGGGCACAACTATTGTTAGTATATCCGACTAGCGCT
GGGCGC
Found at i:7958825 original size:25 final size:27
Alignment explanation
Indices: 7958797--7958851 Score: 64
Period size: 26 Copynumber: 2.1 Consensus size: 27
7958787 CATTTTAATT
7958797 ATGTGTTAAT-TTC-AAGACTTATGTA
1 ATGTGTTAATATTCAAAGACTTATGTA
*
7958822 A--TGTTAGTGATTCAAAGACTTATGTA
1 ATGTGTTAAT-ATTCAAAGACTTATGTA
7958848 ATGT
1 ATGT
7958852 TTTTAATTAT
Statistics
Matches: 24, Mismatches: 1, Indels: 7
0.75 0.03 0.22
Matches are distributed among these distances:
23 6 0.25
25 4 0.17
26 13 0.54
28 1 0.04
ACGTcount: A:0.33, C:0.07, G:0.18, T:0.42
Consensus pattern (27 bp):
ATGTGTTAATATTCAAAGACTTATGTA
Found at i:7958886 original size:9 final size:9
Alignment explanation
Indices: 7958872--7958938 Score: 91
Period size: 9 Copynumber: 7.4 Consensus size: 9
7958862 GTAGTGATTC
7958872 AATTCGGTT
1 AATTCGGTT
7958881 AATTCGGTT
1 AATTCGGTT
*
7958890 AATTTGAG-T
1 AATTCG-GTT
7958899 AATTCGGTT
1 AATTCGGTT
*
7958908 AATTCGGGT
1 AATTCGGTT
7958917 AATTCGGTT
1 AATTCGGTT
*
7958926 AATTCGATT
1 AATTCGGTT
7958935 AATT
1 AATT
7958939 TTTAACCAAA
Statistics
Matches: 51, Mismatches: 5, Indels: 4
0.85 0.08 0.07
Matches are distributed among these distances:
8 1 0.02
9 49 0.96
10 1 0.02
ACGTcount: A:0.27, C:0.09, G:0.21, T:0.43
Consensus pattern (9 bp):
AATTCGGTT
Found at i:7961989 original size:42 final size:42
Alignment explanation
Indices: 7961927--7962062 Score: 141
Period size: 42 Copynumber: 3.2 Consensus size: 42
7961917 AAGCTCATGG
*
7961927 AGCTAAACAGAAACCCATAAGGGTTGAACAAAAGCTCGTAAA
1 AGCTAAACAGAAACCCATAAGGGTTAAACAAAAGCTCGTAAA
* *
7961969 AGCTGAACGGAAACCCATAAGGGTTAAACAAAAGCTCG-AAA
1 AGCTAAACAGAAACCCATAAGGGTTAAACAAAAGCTCGTAAA
** * * ** * *
7962010 GATTTAAACAGAAACTCATATA-AGTTAAACAGGAGCTCGTGAG
1 -AGCTAAACAGAAACCCATA-AGGGTTAAACAAAAGCTCGTAAA
7962053 AGCTAAACAG
1 AGCTAAACAG
7962063 TAAGTAAACA
Statistics
Matches: 76, Mismatches: 15, Indels: 6
0.78 0.15 0.06
Matches are distributed among these distances:
41 3 0.04
42 71 0.93
43 2 0.03
ACGTcount: A:0.46, C:0.18, G:0.21, T:0.16
Consensus pattern (42 bp):
AGCTAAACAGAAACCCATAAGGGTTAAACAAAAGCTCGTAAA
Found at i:7968483 original size:23 final size:23
Alignment explanation
Indices: 7968457--7968531 Score: 96
Period size: 23 Copynumber: 3.2 Consensus size: 23
7968447 CCAAAATCTG
7968457 AAGTAGAAAAATTTATTGTAATT
1 AAGTAGAAAAATTTATTGTAATT
*** *
7968480 AAGTTTTAATATTTACTGTGTAATT
1 AAGTAGAAAAATTTA-T-TGTAATT
7968505 AAGTAGAAAAATTTATTGTAATT
1 AAGTAGAAAAATTTATTGTAATT
7968528 AAGT
1 AAGT
7968532 TTTAATATTT
Statistics
Matches: 42, Mismatches: 8, Indels: 4
0.78 0.15 0.07
Matches are distributed among these distances:
23 22 0.52
24 2 0.05
25 18 0.43
ACGTcount: A:0.43, C:0.01, G:0.13, T:0.43
Consensus pattern (23 bp):
AAGTAGAAAAATTTATTGTAATT
Found at i:7968512 original size:48 final size:48
Alignment explanation
Indices: 7968457--7968552 Score: 192
Period size: 48 Copynumber: 2.0 Consensus size: 48
7968447 CCAAAATCTG
7968457 AAGTAGAAAAATTTATTGTAATTAAGTTTTAATATTTACTGTGTAATT
1 AAGTAGAAAAATTTATTGTAATTAAGTTTTAATATTTACTGTGTAATT
7968505 AAGTAGAAAAATTTATTGTAATTAAGTTTTAATATTTACTGTGTAATT
1 AAGTAGAAAAATTTATTGTAATTAAGTTTTAATATTTACTGTGTAATT
7968553 GAATGACTGT
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
48 48 1.00
ACGTcount: A:0.40, C:0.02, G:0.12, T:0.46
Consensus pattern (48 bp):
AAGTAGAAAAATTTATTGTAATTAAGTTTTAATATTTACTGTGTAATT
Found at i:7968541 original size:23 final size:25
Alignment explanation
Indices: 7968473--7968552 Score: 110
Period size: 25 Copynumber: 3.3 Consensus size: 25
7968463 AAAAATTTAT
7968473 TGTAATTAAGTTTTAATATTTACTG
1 TGTAATTAAGTTTTAATATTTACTG
*** *
7968498 TGTAATTAAGTAGAAAAATTTA-T-
1 TGTAATTAAGTTTTAATATTTACTG
7968521 TGTAATTAAGTTTTAATATTTACTG
1 TGTAATTAAGTTTTAATATTTACTG
7968546 TGTAATT
1 TGTAATT
7968553 GAATGACTGT
Statistics
Matches: 45, Mismatches: 8, Indels: 4
0.79 0.14 0.07
Matches are distributed among these distances:
23 18 0.40
24 2 0.04
25 25 0.56
ACGTcount: A:0.36, C:0.03, G:0.12, T:0.49
Consensus pattern (25 bp):
TGTAATTAAGTTTTAATATTTACTG
Found at i:7969774 original size:51 final size:50
Alignment explanation
Indices: 7969719--7969869 Score: 180
Period size: 51 Copynumber: 3.0 Consensus size: 50
7969709 ATGAGTATAA
*
7969719 GATAGTTATGGTCACATTTGTAGTACTAAGTGCAGGCTACTATGTGTACCG
1 GATAGTTATGGTCACATGTGTAGTACTAAGTGCA-GCTACTATGTGTACCG
* * *
7969770 GATAGCTT-TGGTCACATGCGTAGTACTATGTGCTAGCTACTATGTGTACTG
1 GATAG-TTATGGTCACATGTGTAGTACTAAGTGC-AGCTACTATGTGTACCG
* * *
7969821 GAT-GGTATTGATCACATGTGTAGTACTAAGTGTACGCTACTATGTGTAC
1 GATAGTTA-TGGTCACATGTGTAGTACTAAGTGCA-GCTACTATGTGTAC
7969870 TGAATAGCAT
Statistics
Matches: 86, Mismatches: 9, Indels: 10
0.82 0.09 0.10
Matches are distributed among these distances:
49 1 0.01
50 2 0.02
51 80 0.93
52 3 0.03
ACGTcount: A:0.25, C:0.16, G:0.25, T:0.34
Consensus pattern (50 bp):
GATAGTTATGGTCACATGTGTAGTACTAAGTGCAGCTACTATGTGTACCG
Found at i:7969870 original size:51 final size:50
Alignment explanation
Indices: 7969730--7969885 Score: 179
Period size: 51 Copynumber: 3.1 Consensus size: 50
7969720 ATAGTTATGG
* * * * *
7969730 TCACATTTGTAGTACTAAGTGCAGGCTACTATGTGTACCGGATAGCT-TTGG
1 TCACATGTGTAGTACTAAGTGTA-GCTACTATGTGTACTGGAT-GGTATTGA
* *
7969781 TCACATGCGTAGTACTATGTGCTAGCTACTATGTGTACTGGATGGTATTGA
1 TCACATGTGTAGTACTAAGTG-TAGCTACTATGTGTACTGGATGGTATTGA
* * *
7969832 TCACATGTGTAGTACTAAGTGTACGCTACTATGTGTACTGAATAGCATTGA
1 TCACATGTGTAGTACTAAGTGTA-GCTACTATGTGTACTGGATGGTATTGA
7969883 TCA
1 TCA
7969886 TAAGGGTGTG
Statistics
Matches: 90, Mismatches: 12, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
50 4 0.04
51 85 0.94
52 1 0.01
ACGTcount: A:0.26, C:0.17, G:0.24, T:0.34
Consensus pattern (50 bp):
TCACATGTGTAGTACTAAGTGTAGCTACTATGTGTACTGGATGGTATTGA
Found at i:7976900 original size:41 final size:41
Alignment explanation
Indices: 7976855--7976932 Score: 111
Period size: 41 Copynumber: 1.9 Consensus size: 41
7976845 ATTATAACAG
*
7976855 ATACAGAACATACTTAAAAGATAACATATTATACACAACTT
1 ATACAGAACATACTTAAAAGATAACAAATTATACACAACTT
** * *
7976896 ATACAGATTATTCTTAATAGATAACAAATTATACACA
1 ATACAGAACATACTTAAAAGATAACAAATTATACACA
7976933 TATAACTTAT
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
41 32 1.00
ACGTcount: A:0.50, C:0.15, G:0.05, T:0.29
Consensus pattern (41 bp):
ATACAGAACATACTTAAAAGATAACAAATTATACACAACTT
Found at i:7985555 original size:228 final size:230
Alignment explanation
Indices: 7985150--7985615 Score: 668
Period size: 228 Copynumber: 2.0 Consensus size: 230
7985140 GTACTACTTT
*
7985150 AGTGTATTAATTTTCCTCAACTGGTCGTTTTCTGCTTGTAGTTGAGGGAACCCTAGTTGTACCAT
1 AGTGTGTTAATTTTCCTCAACTGGTCGTTTTCTGCTTGTAGTTGAGGGAACCCTAGTTGTACCAT
* * * * * *
7985215 ATTTTTTGTAAAATGCATTGCATTCATGCTAATTACTGTTTTGATTTTTTTTTTGTTGCATGGTA
66 ATTTTTTGTAAAATGCATTGCACTCATGCTAATTACTATTTAGATTTGTCTTTTGTTGCATAGTA
* * *
7985280 AAATGGCCCATCAAAATTATAACCATTGTTTTTCTATTTAAGTTGACGTGATGTTACACTTGCAT
131 AAACGGCCCATCAAAATTATAACCATTGTTTTTCTATTTAAGTTGACGTGATGTCACACTTGCAG
* * * *
7985345 GGCTGCCTAAATGACACCATCTTAGTACTGGCTGG
196 GGCAGCCTAAAAGACACCATCTTACTACAGGCTGG
* * * *
7985380 AGTGTGTTAATTTTCCTCAACTGGTTGTTTTGTGTTTTTAGTTGAGGGAACCCTAGTTGTA-C-T
1 AGTGTGTTAATTTTCCTCAACTGGTCGTTTTCTGCTTGTAGTTGAGGGAACCCTAGTTGTACCAT
* * * *
7985443 GTCTTTTTGTGAACTGCATTGCACTCATGTTAATTACTATTTAGA-TTGTCTTTTGTTGCATAGT
66 AT-TTTTTGTAAAATGCATTGCACTCATGCTAATTACTATTTAGATTTGTCTTTTGTTGCATAGT
* **
7985507 AATACGGCCCATCAAAATTATAACTGTTGTTTTTCTATTTAAGTTGACGTGATGTCACACTTGCA
130 AAAACGGCCCATCAAAATTATAACCATTGTTTTTCTATTTAAGTTGACGTGATGTCACACTTGCA
*
7985572 GGGCAGCCTAAAAGACACCTTCTTACTACAGGCTGG
195 GGGCAGCCTAAAAGACACCATCTTACTACAGGCTGG
7985608 AGTGTGTT
1 AGTGTGTT
7985616 TGTTAGTGCC
Statistics
Matches: 209, Mismatches: 26, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
228 116 0.56
229 37 0.18
230 56 0.27
ACGTcount: A:0.23, C:0.17, G:0.19, T:0.41
Consensus pattern (230 bp):
AGTGTGTTAATTTTCCTCAACTGGTCGTTTTCTGCTTGTAGTTGAGGGAACCCTAGTTGTACCAT
ATTTTTTGTAAAATGCATTGCACTCATGCTAATTACTATTTAGATTTGTCTTTTGTTGCATAGTA
AAACGGCCCATCAAAATTATAACCATTGTTTTTCTATTTAAGTTGACGTGATGTCACACTTGCAG
GGCAGCCTAAAAGACACCATCTTACTACAGGCTGG
Found at i:7986855 original size:387 final size:387
Alignment explanation
Indices: 7986141--7986916 Score: 1453
Period size: 387 Copynumber: 2.0 Consensus size: 387
7986131 CACGTGTTTC
7986141 AGTTGGGATGCGTTTCAGAATGCTTTTTGAGACAGAAGAATCAAGTGTTCGTAGGTATAATAGTT
1 AGTTGGGATGCGTTTCAGAATGCTTTTTGAGACAGAAGAATCAAGTGTTCGTAGGTATAATAGTT
7986206 CTTAGCGGTTCATTAAGTATTTCTTTGGTGGTTTATCTCGTGTGATTATTAGCATTTGTTTATAT
66 CTTAGCGGTTCATTAAGTATTTCTTTGGTGGTTTATCTCGTGTGATTATTAGCATTTGTTTATAT
*
7986271 AATCATGTTCTTGAAAGCCATCTATATTCTTATTAAAATCTTTTGCTTACTTTTTGACTCGCTTG
131 AATCATGTTCTTGAAAGCCATCTATATTCTTATTAAAATCTTTTGCTTACTTTCTGACTCGCTTG
7986336 TGAGCTTATCACTGGTACACTACAAGATTTAGCACCCAACTGTTTTGTATTTGTCCAAAAGTAAG
196 TGAGCTTATCACTGGTACACTACAAGATTTAGCACCCAACTGTTTTGTATTTGTCCAAAAGTAAG
* *
7986401 AATATGTTTTGACATATCCAAGTCTTTCATCTGAAAATGTCTGAAGAACAGATTTGAGAGCTTAG
261 AATATGTTTTGACATACCCAAGTCTTTCATCTGAAAATGTCTGAAGAACAGATCTGAGAGCTTAG
7986466 ATACCTTCATTCTTACTAGCAGTAATAACAATATCATTAACATACACAACTAAAAGTATAAT
326 ATACCTTCATTCTTACTAGCAGTAATAACAATATCATTAACATACACAACTAAAAGTATAAT
7986528 AGTTGGGATGCGTTTCAGAATGCTTTTTGAGACAGAAGAATCAAGTGTTCGTAGGTATAATAGTT
1 AGTTGGGATGCGTTTCAGAATGCTTTTTGAGACAGAAGAATCAAGTGTTCGTAGGTATAATAGTT
* * * *
7986593 CTTAGTGGTTCTTTAAGTATTTCTTTGGTGGTTTATCTTGTGTGATTATTAGCATTTGTTTATCT
66 CTTAGCGGTTCATTAAGTATTTCTTTGGTGGTTTATCTCGTGTGATTATTAGCATTTGTTTATAT
*
7986658 AATCATGTTCTTGAAAGCCATCTATGTTCTTATTAAAATCTTTTGCTTACTTTCTGACTCGCTTG
131 AATCATGTTCTTGAAAGCCATCTATATTCTTATTAAAATCTTTTGCTTACTTTCTGACTCGCTTG
* *
7986723 TGATCTTATCACTGGTACACTACAAGATTTAGCACCCAACTGTTTTGTATTTGTCCAGAAGTAAG
196 TGAGCTTATCACTGGTACACTACAAGATTTAGCACCCAACTGTTTTGTATTTGTCCAAAAGTAAG
7986788 AATATGTTTTGACATACCCAAGTCTTTCATCTGAAAATGTCTGAAGAACAGATCTGAGAGCTTAG
261 AATATGTTTTGACATACCCAAGTCTTTCATCTGAAAATGTCTGAAGAACAGATCTGAGAGCTTAG
*
7986853 ATACCTTCATTCTTACTAGCAGTAATAACAATATCATTAACGTACACAACTAAAAGTATAAT
326 ATACCTTCATTCTTACTAGCAGTAATAACAATATCATTAACATACACAACTAAAAGTATAAT
7986915 AG
1 AG
7986917 CTGCTTTACT
Statistics
Matches: 378, Mismatches: 11, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
387 378 1.00
ACGTcount: A:0.30, C:0.15, G:0.17, T:0.38
Consensus pattern (387 bp):
AGTTGGGATGCGTTTCAGAATGCTTTTTGAGACAGAAGAATCAAGTGTTCGTAGGTATAATAGTT
CTTAGCGGTTCATTAAGTATTTCTTTGGTGGTTTATCTCGTGTGATTATTAGCATTTGTTTATAT
AATCATGTTCTTGAAAGCCATCTATATTCTTATTAAAATCTTTTGCTTACTTTCTGACTCGCTTG
TGAGCTTATCACTGGTACACTACAAGATTTAGCACCCAACTGTTTTGTATTTGTCCAAAAGTAAG
AATATGTTTTGACATACCCAAGTCTTTCATCTGAAAATGTCTGAAGAACAGATCTGAGAGCTTAG
ATACCTTCATTCTTACTAGCAGTAATAACAATATCATTAACATACACAACTAAAAGTATAAT
Found at i:7991059 original size:31 final size:31
Alignment explanation
Indices: 7991024--7991086 Score: 126
Period size: 31 Copynumber: 2.0 Consensus size: 31
7991014 CTGACATTGC
7991024 TATTTCAACAACTTCAACGTTGGGAATTGGT
1 TATTTCAACAACTTCAACGTTGGGAATTGGT
7991055 TATTTCAACAACTTCAACGTTGGGAATTGGT
1 TATTTCAACAACTTCAACGTTGGGAATTGGT
7991086 T
1 T
7991087 TAAGTTTCTA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.29, C:0.16, G:0.19, T:0.37
Consensus pattern (31 bp):
TATTTCAACAACTTCAACGTTGGGAATTGGT
Found at i:7992968 original size:24 final size:25
Alignment explanation
Indices: 7992912--7992968 Score: 73
Period size: 24 Copynumber: 2.4 Consensus size: 25
7992902 TAAAAAATAA
7992912 TTTTAATATTTAAAAATATTAAAAT
1 TTTTAATATTTAAAAATATTAAAAT
* **
7992937 ATTT-ATATTTAATCATA-TAAAAT
1 TTTTAATATTTAAAAATATTAAAAT
7992960 TTTTAATAT
1 TTTTAATAT
7992969 AATTTTTTAG
Statistics
Matches: 27, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
23 9 0.33
24 15 0.56
25 3 0.11
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.51
Consensus pattern (25 bp):
TTTTAATATTTAAAAATATTAAAAT
Found at i:7993005 original size:23 final size:22
Alignment explanation
Indices: 7992974--7993018 Score: 54
Period size: 23 Copynumber: 2.0 Consensus size: 22
7992964 AATATAATTT
* *
7992974 TTTAGTTTAGTATTACAATTTTA
1 TTTAATTTAGTAATA-AATTTTA
*
7992997 TTTAATTTATTAATAAATTTTA
1 TTTAATTTAGTAATAAATTTTA
7993019 ATATTAACAA
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
22 7 0.37
23 12 0.63
ACGTcount: A:0.36, C:0.02, G:0.04, T:0.58
Consensus pattern (22 bp):
TTTAATTTAGTAATAAATTTTA
Found at i:7999840 original size:52 final size:50
Alignment explanation
Indices: 7999779--7999882 Score: 163
Period size: 52 Copynumber: 2.0 Consensus size: 50
7999769 TGAAGAACTT
*
7999779 AACCGGATTTTAAATGCACTGTAATCCGTTATATATGAGATATTCTTATGAA
1 AACCGGATTTTAAATGCACTGTAATCCATTATATATGAG--ATTCTTATGAA
* *
7999831 AACCGGATTTTAATTGCATTGTAATCCATTATATATGAGATTCTTATGAA
1 AACCGGATTTTAAATGCACTGTAATCCATTATATATGAGATTCTTATGAA
7999881 AA
1 AA
7999883 AGGGCATACT
Statistics
Matches: 49, Mismatches: 3, Indels: 2
0.91 0.06 0.04
Matches are distributed among these distances:
50 13 0.27
52 36 0.73
ACGTcount: A:0.36, C:0.12, G:0.14, T:0.38
Consensus pattern (50 bp):
AACCGGATTTTAAATGCACTGTAATCCATTATATATGAGATTCTTATGAA
Found at i:8015952 original size:44 final size:44
Alignment explanation
Indices: 8015880--8016219 Score: 251
Period size: 44 Copynumber: 7.7 Consensus size: 44
8015870 ATTACCATAG
* * * *
8015880 CGAATCTTATCTCTCTGAGGTTGTAGTGGAGTAGATTGAAGCTA
1 CGAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCTA
* * *
8015924 TGAATCTTATCTCCCTGAAGTTGCAGTGGAGTAGATTGAAACTA
1 CGAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCTA
* * * * ** *
8015968 CAAATCATATAC-CCCTAAAGTTGTAGTGG-GTTGGATTGAATCTACCATA
1 CGAATCTTAT-CTCCCTGAAGTTGCAGTGGAG-CAGATTG-A---AGC-TA
* *
8016017 GCGAATCTTATTTCCCTGAAGTTACAGTGGAGCAGATTGAAGCTA
1 -CGAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCTA
* * *
8016062 CAAATCTTATCTCCTTGAAATTGCAGTGGAGCAGATTGAAG---
1 CGAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCTA
* * * *
8016103 CGAATCTTACCTCTCTGATA-TTACAGTGGAGCAGATTAAAGCTA
1 CGAATCTTATCTCCCTGA-AGTTGCAGTGGAGCAGATTGAAGCTA
* ** * * *
8016147 CAAATCTTATCTCTTTGAAGTTGCAGTGGATCAGATTAAAGGTA
1 CGAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCTA
* * ** *
8016191 CAAACCTTATCTCCCAAAAGTTGTAGTGG
1 CGAATCTTATCTCCCTGAAGTTGCAGTGG
8016220 GGCAAGATGA
Statistics
Matches: 237, Mismatches: 44, Indels: 30
0.76 0.14 0.10
Matches are distributed among these distances:
41 33 0.14
42 1 0.00
43 2 0.01
44 162 0.68
45 4 0.02
46 2 0.01
48 2 0.01
49 3 0.01
50 27 0.11
51 1 0.00
ACGTcount: A:0.30, C:0.17, G:0.21, T:0.31
Consensus pattern (44 bp):
CGAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCTA
Found at i:8016130 original size:41 final size:39
Alignment explanation
Indices: 8016016--8016144 Score: 132
Period size: 41 Copynumber: 3.1 Consensus size: 39
8016006 AATCTACCAT
*
8016016 AGCGAATCTTATTTCCCTGAAGTTACAGTGGAGCAGATTGA
1 AGCGAATCTTATCT-CCTGAA-TTACAGTGGAGCAGATTGA
* *
8016057 AGCTACAAATCTTATCTCCTTGAAATTGCAGTGGAGCAGATTGA
1 AG---CGAATCTTATCTCC-TG-AATTACAGTGGAGCAGATTGA
* *
8016101 AGCGAATCTTACCTCTCTGATATTACAGTGGAGCAGATTAA
1 AGCGAATCTTATCTC-CTGA-ATTACAGTGGAGCAGATTGA
8016142 AGC
1 AGC
8016145 TACAAATCTT
Statistics
Matches: 74, Mismatches: 7, Indels: 14
0.78 0.07 0.15
Matches are distributed among these distances:
40 1 0.01
41 36 0.49
42 1 0.01
43 2 0.03
44 32 0.43
45 2 0.03
ACGTcount: A:0.31, C:0.19, G:0.22, T:0.29
Consensus pattern (39 bp):
AGCGAATCTTATCTCCTGAATTACAGTGGAGCAGATTGA
Found at i:8016159 original size:85 final size:85
Alignment explanation
Indices: 8016016--8016183 Score: 257
Period size: 85 Copynumber: 2.0 Consensus size: 85
8016006 AATCTACCAT
** *
8016016 AGCGAATCTTATTTCCCTGAAGTTACAGTGGAGCAGATTGAAGCTACAAATCTTATCTCCTTGAA
1 AGCGAATCTTACCTCCCTGAAGTTACAGTGGAGCAGATTAAAGCTACAAATCTTATCTCCTTGAA
8016081 ATTGCAGTGGAGCAGATTGA
66 ATTGCAGTGGAGCAGATTGA
* *
8016101 AGCGAATCTTACCTCTCTGATA-TTACAGTGGAGCAGATTAAAGCTACAAATCTTATCTCTTTGA
1 AGCGAATCTTACCTCCCTGA-AGTTACAGTGGAGCAGATTAAAGCTACAAATCTTATCTCCTTGA
* *
8016165 AGTTGCAGTGGATCAGATT
65 AATTGCAGTGGAGCAGATT
8016184 AAAGGTACAA
Statistics
Matches: 75, Mismatches: 7, Indels: 2
0.89 0.08 0.02
Matches are distributed among these distances:
85 74 0.99
86 1 0.01
ACGTcount: A:0.30, C:0.18, G:0.21, T:0.31
Consensus pattern (85 bp):
AGCGAATCTTACCTCCCTGAAGTTACAGTGGAGCAGATTAAAGCTACAAATCTTATCTCCTTGAA
ATTGCAGTGGAGCAGATTGA
Found at i:8026392 original size:17 final size:16
Alignment explanation
Indices: 8026358--8026400 Score: 52
Period size: 17 Copynumber: 2.6 Consensus size: 16
8026348 TATTTGATGT
8026358 ATTTATATTTTTTAAA
1 ATTTATATTTTTTAAA
8026374 ATTTAT-TTTTATATAAA
1 ATTTATATTTT-T-TAAA
8026391 ATTTAATATT
1 ATTT-ATATT
8026401 AATTTTTTTA
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
15 4 0.17
16 7 0.30
17 8 0.35
18 2 0.09
19 2 0.09
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (16 bp):
ATTTATATTTTTTAAA
Found at i:8026953 original size:2 final size:2
Alignment explanation
Indices: 8026946--8026997 Score: 104
Period size: 2 Copynumber: 26.0 Consensus size: 2
8026936 CTATTGGGAT
8026946 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
8026988 TC TC TC TC TC
1 TC TC TC TC TC
8026998 ATATTTTTTG
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 50 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
TC
Found at i:8029249 original size:30 final size:29
Alignment explanation
Indices: 8029183--8029249 Score: 73
Period size: 29 Copynumber: 2.3 Consensus size: 29
8029173 CGCATATTTG
** *
8029183 AAATTTAGTCTCCATACTTTTATTTTTAG
1 AAATTTAGTCTCCATACTTTTAAATTTAA
*
8029212 GAATTTAGTCTCTC-TACTTTTCAAATTTAA
1 AAATTTAGTCTC-CATACTTTT-AAATTTAA
8029242 AAATTTAG
1 AAATTTAG
8029250 GTTTATTTGT
Statistics
Matches: 31, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
29 18 0.58
30 13 0.42
ACGTcount: A:0.31, C:0.13, G:0.07, T:0.48
Consensus pattern (29 bp):
AAATTTAGTCTCCATACTTTTAAATTTAA
Found at i:8034017 original size:21 final size:22
Alignment explanation
Indices: 8033966--8034012 Score: 67
Period size: 25 Copynumber: 2.0 Consensus size: 22
8033956 TCCACAGAGA
8033966 AAAAATAAATAGGTATTTATAT
1 AAAAATAAATAGGTATTTATAT
8033988 ACACAAAATAAATAGGTATTTATAT
1 --A-AAAATAAATAGGTATTTATAT
8034013 TAAATTCCTA
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
24 1 0.05
25 21 0.95
ACGTcount: A:0.53, C:0.04, G:0.09, T:0.34
Consensus pattern (22 bp):
AAAAATAAATAGGTATTTATAT
Found at i:8038145 original size:57 final size:57
Alignment explanation
Indices: 8038052--8038174 Score: 210
Period size: 57 Copynumber: 2.2 Consensus size: 57
8038042 TATTAGATTG
* *
8038052 AAGGATGACCGAGTGACCTCTAAAGATGATAATTGTTGTTTGACAGCAAGAAGAGAC
1 AAGGCTGACCAAGTGACCTCTAAAGATGATAATTGTTGTTTGACAGCAAGAAGAGAC
* *
8038109 GAGGCTGACCAAGTGACGTCTAAAGATGATAATTGTTGTTTGACAGCAAGAAGAGAC
1 AAGGCTGACCAAGTGACCTCTAAAGATGATAATTGTTGTTTGACAGCAAGAAGAGAC
8038166 AAGGCTGAC
1 AAGGCTGAC
8038175 GAGTCTGAAT
Statistics
Matches: 61, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
57 61 1.00
ACGTcount: A:0.36, C:0.15, G:0.28, T:0.22
Consensus pattern (57 bp):
AAGGCTGACCAAGTGACCTCTAAAGATGATAATTGTTGTTTGACAGCAAGAAGAGAC
Found at i:8039407 original size:19 final size:19
Alignment explanation
Indices: 8039368--8039408 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 19
8039358 TTTTTAGTTA
* **
8039368 TTTTATATATTTATACTTT
1 TTTTATAAATTTATAAATT
8039387 TTTTATAAATTTATAAATT
1 TTTTATAAATTTATAAATT
8039406 TTT
1 TTT
8039409 AGTCCTTTTA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.32, C:0.02, G:0.00, T:0.66
Consensus pattern (19 bp):
TTTTATAAATTTATAAATT
Found at i:8040110 original size:25 final size:23
Alignment explanation
Indices: 8040060--8040112 Score: 61
Period size: 24 Copynumber: 2.2 Consensus size: 23
8040050 CAAAAACTTG
* *
8040060 TTTTATTTTAAAGGTGATTTCTT
1 TTTTATTTTAAAAGTGATTTCGT
*
8040083 TTTTATTGTTAAAAGTGTTTATCGT
1 TTTTATT-TTAAAAGTGATT-TCGT
8040108 TTTTA
1 TTTTA
8040113 CATTTTTTTC
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
23 7 0.28
24 10 0.40
25 8 0.32
ACGTcount: A:0.23, C:0.04, G:0.13, T:0.60
Consensus pattern (23 bp):
TTTTATTTTAAAAGTGATTTCGT
Found at i:8047421 original size:44 final size:44
Alignment explanation
Indices: 8047373--8047819 Score: 155
Period size: 44 Copynumber: 10.2 Consensus size: 44
8047363 TTAGATCTTG
* *
8047373 CCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGCGGATTTTA
1 CCTCCCTAAGCAGCAGTGGAGCAGATCGAAGATGGCAGATTTTA
** * * * *** * *
8047417 CCTCCCTGAAGTTGCAGTGGAGTACATTGAAGCCAGTA-ATTCTA
1 CCTCCCT-AAGCAGCAGTGGAGCAGATCGAAGATGGCAGATTTTA
* ** * ** * ** * *
8047461 CTTCCCTGGGCAGCAGCGGAATAGATTGAAGATTACAGATCTTG
1 CCTCCCTAAGCAGCAGTGGAGCAGATCGAAGATGGCAGATTTTA
*
8047505 CCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGCAGATTTTA
1 CCTCCCTAAGCAGCAGTGGAGCAGATCGAAGATGGCAGATTTTA
** * * * *** * *
8047549 CCTCCCTGAAGTTGCAGTGGAGTACATTGAAGCCAGTA-ATTCTA
1 CCTCCCT-AAGCAGCAGTGGAGCAGATCGAAGATGGCAGATTTTA
* ** * ** * ** * *
8047593 CTTCCCTGGGCAGCAGCGGAATAGATTGAAGATTTCAGATCTTG
1 CCTCCCTAAGCAGCAGTGGAGCAGATCGAAGATGGCAGATTTTA
* ** * * **
8047637 TCTCTTTAAGCAGTAGTGGAGCAGATCAAAGATGGTGGATTTTA
1 CCTCCCTAAGCAGCAGTGGAGCAGATCGAAGATGGCAGATTTTA
* ** * * * ** * *
8047681 CCTCCCTGAGGTTGCAGTGGAGTACATTGAAGACAGTA-ATTCTA
1 CCTCCCT-AAGCAGCAGTGGAGCAGATCGAAGATGGCAGATTTTA
* ** * ** ** *
8047725 TCTCCCTGGGCAACAGTGGAATAGAGT-GAAGATTACAGATCTTA
1 CCTCCCTAAGCAGCAGTGGAGCAGA-TCGAAGATGGCAGATTTTA
* * * *
8047769 TCTCCCTAAGCAGTAGTGAAGCAGATCAAAGATGGCAGATTTTA
1 CCTCCCTAAGCAGCAGTGGAGCAGATCGAAGATGGCAGATTTTA
8047813 CCTCCCT
1 CCTCCCT
8047820 GAGGTTGCAG
Statistics
Matches: 270, Mismatches: 125, Indels: 16
0.66 0.30 0.04
Matches are distributed among these distances:
43 55 0.20
44 157 0.58
45 58 0.21
ACGTcount: A:0.28, C:0.20, G:0.25, T:0.26
Consensus pattern (44 bp):
CCTCCCTAAGCAGCAGTGGAGCAGATCGAAGATGGCAGATTTTA
Found at i:8047878 original size:132 final size:132
Alignment explanation
Indices: 8047255--8047854 Score: 968
Period size: 132 Copynumber: 4.5 Consensus size: 132
8047245 CTGCATCGAC
* *
8047255 AGTGGAGCAGATCAAAGATGGCAGATTTTACCTCCCTGCGGTTACAGTGGAGTACATTGAAGCCA
1 AGTGGAGCAGATCAAAGATGGCAGATTTTACCTCCCTGAGGTTGCAGTGGAGTACATTGAAGCCA
* **
8047320 GTAATTCTACTTCCCTGGGCAGCAGCGGAATAGATTGAATATTTTAGATCTTGCCTCCCTAAGCA
66 GTAATTCTACTTCCCTGGGCAGCAGCGGAATAGATTGAAGATTACAGATCTTGCCTCCCTAAGCA
8047385 GT
131 GT
* * *
8047387 AGTGGAGCAGATCGAAGATGGCGGATTTTACCTCCCTGAAGTTGCAGTGGAGTACATTGAAGCCA
1 AGTGGAGCAGATCAAAGATGGCAGATTTTACCTCCCTGAGGTTGCAGTGGAGTACATTGAAGCCA
8047452 GTAATTCTACTTCCCTGGGCAGCAGCGGAATAGATTGAAGATTACAGATCTTGCCTCCCTAAGCA
66 GTAATTCTACTTCCCTGGGCAGCAGCGGAATAGATTGAAGATTACAGATCTTGCCTCCCTAAGCA
8047517 GT
131 GT
* *
8047519 AGTGGAGCAGATCGAAGATGGCAGATTTTACCTCCCTGAAGTTGCAGTGGAGTACATTGAAGCCA
1 AGTGGAGCAGATCAAAGATGGCAGATTTTACCTCCCTGAGGTTGCAGTGGAGTACATTGAAGCCA
* * **
8047584 GTAATTCTACTTCCCTGGGCAGCAGCGGAATAGATTGAAGATTTCAGATCTTGTCTCTTTAAGCA
66 GTAATTCTACTTCCCTGGGCAGCAGCGGAATAGATTGAAGATTACAGATCTTGCCTCCCTAAGCA
8047649 GT
131 GT
** *
8047651 AGTGGAGCAGATCAAAGATGGTGGATTTTACCTCCCTGAGGTTGCAGTGGAGTACATTGAAGACA
1 AGTGGAGCAGATCAAAGATGGCAGATTTTACCTCCCTGAGGTTGCAGTGGAGTACATTGAAGCCA
* * * **
8047716 GTAATTCTA-TCTCCCTGGGCAACAGTGGAATAGAGTGAAGATTACAGATCTTATCTCCCTAAGC
66 GTAATTCTACT-TCCCTGGGCAGCAGCGGAATAGATTGAAGATTACAGATCTTGCCTCCCTAAGC
8047780 AGT
130 AGT
* *
8047783 AGTGAAGCAGATCAAAGATGGCAGATTTTACCTCCCTGAGGTTGCAGTGGAGTATATTGAAGCCA
1 AGTGGAGCAGATCAAAGATGGCAGATTTTACCTCCCTGAGGTTGCAGTGGAGTACATTGAAGCCA
8047848 GTAATTC
66 GTAATTC
8047855 AATTCCCCTG
Statistics
Matches: 437, Mismatches: 30, Indels: 2
0.93 0.06 0.00
Matches are distributed among these distances:
131 1 0.00
132 436 1.00
ACGTcount: A:0.28, C:0.20, G:0.26, T:0.27
Consensus pattern (132 bp):
AGTGGAGCAGATCAAAGATGGCAGATTTTACCTCCCTGAGGTTGCAGTGGAGTACATTGAAGCCA
GTAATTCTACTTCCCTGGGCAGCAGCGGAATAGATTGAAGATTACAGATCTTGCCTCCCTAAGCA
GT
Found at i:8049447 original size:13 final size:13
Alignment explanation
Indices: 8049392--8049461 Score: 51
Period size: 13 Copynumber: 5.5 Consensus size: 13
8049382 TTTTTTGAAC
8049392 TATT-TTATTA-T
1 TATTATTATTATT
8049403 T-TTATTATTATT
1 TATTATTATTATT
*
8049415 ATATTA-TACTTGTT
1 -TATTATTA-TTATT
*
8049429 TTTTATTATTATT
1 TATTATTATTATT
*
8049442 TATTATT-TTCAAT
1 TATTATTATT-ATT
8049455 TATTATT
1 TATTATT
8049462 TACGTGTACA
Statistics
Matches: 47, Mismatches: 5, Indels: 12
0.73 0.08 0.19
Matches are distributed among these distances:
10 2 0.04
11 7 0.15
12 3 0.06
13 26 0.55
14 9 0.19
ACGTcount: A:0.27, C:0.03, G:0.01, T:0.69
Consensus pattern (13 bp):
TATTATTATTATT
Found at i:8050865 original size:2 final size:2
Alignment explanation
Indices: 8050858--8050882 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
8050848 AATATGACAA
8050858 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
8050883 AAATTATTTA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:8058071 original size:61 final size:61
Alignment explanation
Indices: 8057999--8058579 Score: 426
Period size: 61 Copynumber: 9.5 Consensus size: 61
8057989 AATATATATT
* * * * *
8057999 CATATACGAATCAAATTCGGCAATGTATAATCATATACAAATCAATTTGGCAATGTATAAC
1 CATATACAAATCAAATTCAGCAATGTATAACCATATACAAATTAATTTAGCAATGTATAAC
** * * * * ** *
8058060 CATATATGAATCAAGTTCGGCAATGTATAATCATATACGAATTAATTCGGCAACT-TATATC
1 CATATACAAATCAAATTCAGCAATGTATAACCATATACAAATTAATTTAGCAA-TGTATAAC
* * * * * *
8058121 CATATACAATTCAATTTCAACAATGTATAACCATATACAAATTAAATTCAGCAAAGTATAAT
1 CATATACAAATCAAATTCAGCAATGTATAACCATATACAAATT-AATTTAGCAATGTATAAC
* * * *** * * *
8058183 CATATATAAATC-AATTCGGAAACT-TATCTTCATATACAAATCAATTTCGATAATGTATAAC
1 CATATACAAATCAAATTCAGCAA-TGTATAACCATATACAAATTAATTTAG-CAATGTATAAC
* * * * *
8058244 CATATACAAAT-AAATTTCAGTAATGTACAACCATATACGAATTAATTCAGCAACT-TATATC
1 CATATACAAATCAAA-TTCAGCAATGTATAACCATATACAAATTAATTTAGCAA-TGTATAAC
* * * *
8058305 CATATACAATTCAATTTCAACAATGTATAACCATATACAAATTAATTTCAGCAATGTATAAT
1 CATATACAAATCAAATTCAGCAATGTATAACCATATACAAATTAATTT-AGCAATGTATAAC
* * * * *** * * * * *
8058367 TATATACGAAT-TAATTCGGCAACT-TATCTTCATATACAAATCAATTTCGATAATATATAAT
1 CATATACAAATCAAATTCAGCAA-TGTATAACCATATACAAATTAATTTAG-CAATGTATAAC
* * * *
8058428 CATATACAAAT-AAATTTCAGCAATGTACAACCATATACGAATTAATTCAGCAACT-TATATC
1 CATATACAAATCAAA-TTCAGCAATGTATAACCATATACAAATTAATTTAGCAA-TGTATAAC
* * * *
8058489 CATATACAATTCAATTTCAACAATGTATAACCATATACAAATTAATTTCAGCAATGTATAAT
1 CATATACAAATCAAATTCAGCAATGTATAACCATATACAAATTAATTT-AGCAATGTATAAC
* * * *
8058551 TATATACAAAT-TAATTCGGCAATATATAA
1 CATATACAAATCAAATTCAGCAATGTATAA
8058580 AACAATCAAA
Statistics
Matches: 401, Mismatches: 99, Indels: 40
0.74 0.18 0.07
Matches are distributed among these distances:
60 6 0.01
61 281 0.70
62 114 0.28
ACGTcount: A:0.44, C:0.16, G:0.07, T:0.33
Consensus pattern (61 bp):
CATATACAAATCAAATTCAGCAATGTATAACCATATACAAATTAATTTAGCAATGTATAAC
Found at i:8058570 original size:184 final size:184
Alignment explanation
Indices: 8058012--8058572 Score: 901
Period size: 184 Copynumber: 3.1 Consensus size: 184
8058002 ATACGAATCA
** ** ** * *
8058012 AATTCGGCAA-TGTATAATCATATACAAATCAATTT-GGCAATGTATAACCATATATGAATCAAG
1 AATTCGGCAACT-TATCTTCATATACAAATCAATTTCGATAATGTATAACCATATACAAATAAAT
* * * *
8058075 TTCGGCAATGTATAATCATATACGAATTAATTCGGCAACTTATATCCATATACAATTCAATTTCA
65 TTCAGCAATGTACAACCATATACGAATTAATTCAGCAACTTATATCCATATACAATTCAATTTCA
* * * * *
8058140 ACAATGTATAACCATATACAAATTAAATTCAGCAAAGTATAATCATATATAAATC
130 ACAATGTATAACCATATACAAATTAATTTCAGCAATGTATAATTATATACAAATT
*
8058195 AATTCGGAAACTTATCTTCATATACAAATCAATTTCGATAATGTATAACCATATACAAATAAATT
1 AATTCGGCAACTTATCTTCATATACAAATCAATTTCGATAATGTATAACCATATACAAATAAATT
*
8058260 TCAGTAATGTACAACCATATACGAATTAATTCAGCAACTTATATCCATATACAATTCAATTTCAA
66 TCAGCAATGTACAACCATATACGAATTAATTCAGCAACTTATATCCATATACAATTCAATTTCAA
*
8058325 CAATGTATAACCATATACAAATTAATTTCAGCAATGTATAATTATATACGAATT
131 CAATGTATAACCATATACAAATTAATTTCAGCAATGTATAATTATATACAAATT
* *
8058379 AATTCGGCAACTTATCTTCATATACAAATCAATTTCGATAATATATAATCATATACAAATAAATT
1 AATTCGGCAACTTATCTTCATATACAAATCAATTTCGATAATGTATAACCATATACAAATAAATT
8058444 TCAGCAATGTACAACCATATACGAATTAATTCAGCAACTTATATCCATATACAATTCAATTTCAA
66 TCAGCAATGTACAACCATATACGAATTAATTCAGCAACTTATATCCATATACAATTCAATTTCAA
8058509 CAATGTATAACCATATACAAATTAATTTCAGCAATGTATAATTATATACAAATT
131 CAATGTATAACCATATACAAATTAATTTCAGCAATGTATAATTATATACAAATT
8058563 AATTCGGCAA
1 AATTCGGCAA
8058573 TATATAAAAC
Statistics
Matches: 351, Mismatches: 25, Indels: 3
0.93 0.07 0.01
Matches are distributed among these distances:
183 30 0.09
184 321 0.91
ACGTcount: A:0.43, C:0.16, G:0.07, T:0.33
Consensus pattern (184 bp):
AATTCGGCAACTTATCTTCATATACAAATCAATTTCGATAATGTATAACCATATACAAATAAATT
TCAGCAATGTACAACCATATACGAATTAATTCAGCAACTTATATCCATATACAATTCAATTTCAA
CAATGTATAACCATATACAAATTAATTTCAGCAATGTATAATTATATACAAATT
Found at i:8058592 original size:92 final size:92
Alignment explanation
Indices: 8057975--8058572 Score: 754
Period size: 92 Copynumber: 6.5 Consensus size: 92
8057965 ATCCAATGCT
* * * * *
8057975 CAAATCAA-TTCAACAATATATATTCATATACGAATCAAATTCGGCAA-TGTATAAT-CATATAC
1 CAAATTAATTTCAGCAATGTATAATCATATACGAAT-TAATTCGGCAACT-TAT-ATCCATATAC
* **
8058037 AAATCAATTT-GGCAATGTATAACCATATA
63 AATTCAATTTCAACAATGTATAACCATATA
** * * *
8058066 TGAATCAAGTTCGGCAATGTATAATCATATACGAATTAATTCGGCAACTTATATCCATATACAAT
1 CAAATTAATTTCAGCAATGTATAATCATATACGAATTAATTCGGCAACTTATATCCATATACAAT
8058131 TCAATTTCAACAATGTATAACCATATA
66 TCAATTTCAACAATGTATAACCATATA
* * ** * * * * *
8058158 CAAATTAAATTCAGCAAAGTATAATCATATATAAATCAATTCGGAAACTTATCTTCATATACAAA
1 CAAATTAATTTCAGCAATGTATAATCATATACGAATTAATTCGGCAACTTATATCCATATACAAT
* *
8058223 TCAATTTCGATAATGTATAACCATATA
66 TCAATTTCAACAATGTATAACCATATA
* * * * *
8058250 CAAATAAATTTCAGTAATGTACAACCATATACGAATTAATTCAGCAACTTATATCCATATACAAT
1 CAAATTAATTTCAGCAATGTATAATCATATACGAATTAATTCGGCAACTTATATCCATATACAAT
8058315 TCAATTTCAACAATGTATAACCATATA
66 TCAATTTCAACAATGTATAACCATATA
* * * *
8058342 CAAATTAATTTCAGCAATGTATAATTATATACGAATTAATTCGGCAACTTATCTTCATATACAAA
1 CAAATTAATTTCAGCAATGTATAATCATATACGAATTAATTCGGCAACTTATATCCATATACAAT
* * * *
8058407 TCAATTTCGATAATATATAATCATATA
66 TCAATTTCAACAATGTATAACCATATA
* * * *
8058434 CAAATAAATTTCAGCAATGTACAACCATATACGAATTAATTCAGCAACTTATATCCATATACAAT
1 CAAATTAATTTCAGCAATGTATAATCATATACGAATTAATTCGGCAACTTATATCCATATACAAT
8058499 TCAATTTCAACAATGTATAACCATATA
66 TCAATTTCAACAATGTATAACCATATA
* *
8058526 CAAATTAATTTCAGCAATGTATAATTATATACAAATTAATTCGGCAA
1 CAAATTAATTTCAGCAATGTATAATCATATACGAATTAATTCGGCAA
8058573 TATATAAAAC
Statistics
Matches: 431, Mismatches: 72, Indels: 7
0.85 0.14 0.01
Matches are distributed among these distances:
90 2 0.00
91 35 0.08
92 394 0.91
ACGTcount: A:0.44, C:0.17, G:0.07, T:0.33
Consensus pattern (92 bp):
CAAATTAATTTCAGCAATGTATAATCATATACGAATTAATTCGGCAACTTATATCCATATACAAT
TCAATTTCAACAATGTATAACCATATA
Found at i:8065878 original size:11 final size:11
Alignment explanation
Indices: 8065820--8065906 Score: 72
Period size: 10 Copynumber: 7.6 Consensus size: 11
8065810 TTAACCTTTC
8065820 AAATAATTTTTA
1 AAAT-ATTTTTA
*
8065832 AAA-AGTTTTA
1 AAATATTTTTA
8065842 AAAT-TTTTTA
1 AAATATTTTTA
8065852 AATATATTTGTTA
1 AA-ATATTT-TTA
8065865 AAATATTTTTA
1 AAATATTTTTA
8065876 AAA-ATTCTATTA
1 AAATATT-T-TTA
* *
8065888 GAAATATGTTAA
1 -AAATATTTTTA
8065900 AAATATT
1 AAATATT
8065907 GATAGTGTTA
Statistics
Matches: 62, Mismatches: 5, Indels: 17
0.74 0.06 0.20
Matches are distributed among these distances:
10 19 0.31
11 15 0.24
12 17 0.27
13 9 0.15
14 2 0.03
ACGTcount: A:0.47, C:0.01, G:0.05, T:0.47
Consensus pattern (11 bp):
AAATATTTTTA
Found at i:8071327 original size:19 final size:20
Alignment explanation
Indices: 8071296--8071354 Score: 68
Period size: 19 Copynumber: 3.0 Consensus size: 20
8071286 GACTTGTTTA
8071296 AAAATAGTTTTAACATG-ATTG
1 AAAATA-TTTTAAC-TGAATTG
8071317 AAAAT-TTTTAACTGAATTG
1 AAAATATTTTAACTGAATTG
* *
8071336 AAACTATTTTAACTTAATT
1 AAAATATTTTAACTGAATT
8071355 TTATCAATTT
Statistics
Matches: 34, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
18 2 0.06
19 15 0.44
20 12 0.35
21 5 0.15
ACGTcount: A:0.42, C:0.07, G:0.08, T:0.42
Consensus pattern (20 bp):
AAAATATTTTAACTGAATTG
Found at i:8071409 original size:22 final size:24
Alignment explanation
Indices: 8071381--8071424 Score: 65
Period size: 22 Copynumber: 1.9 Consensus size: 24
8071371 ATTTTGTTCA
8071381 ACTTTAACTT-TTAT-TCAAAAAC
1 ACTTTAACTTGTTATATCAAAAAC
*
8071403 ACTTTAATTTGTTATATCAAAA
1 ACTTTAACTTGTTATATCAAAA
8071425 CATATTATCA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 9 0.47
23 4 0.21
24 6 0.32
ACGTcount: A:0.41, C:0.14, G:0.02, T:0.43
Consensus pattern (24 bp):
ACTTTAACTTGTTATATCAAAAAC
Found at i:8074685 original size:24 final size:24
Alignment explanation
Indices: 8074658--8074720 Score: 63
Period size: 25 Copynumber: 2.6 Consensus size: 24
8074648 TATGAATTTC
8074658 CCCATTAATGGCTCTCCGGAGCTT
1 CCCATTAATGGCTCTCCGGAGCTT
* * ** *
8074682 CCCAATATTTGGCTCTCTTGTGCTT
1 CCCATTA-ATGGCTCTCCGGAGCTT
*
8074707 CCCATTTATGGCTC
1 CCCATTAATGGCTC
8074721 GTATGAGCCT
Statistics
Matches: 30, Mismatches: 8, Indels: 2
0.75 0.20 0.05
Matches are distributed among these distances:
24 12 0.40
25 18 0.60
ACGTcount: A:0.14, C:0.32, G:0.17, T:0.37
Consensus pattern (24 bp):
CCCATTAATGGCTCTCCGGAGCTT
Found at i:8094689 original size:21 final size:21
Alignment explanation
Indices: 8094663--8094704 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
8094653 TTTAAGAAAA
*
8094663 CTGAAAAACTATTCTAATTGT
1 CTGAAAAACTAGTCTAATTGT
8094684 CTGAAAAACTAGTCTAATTGT
1 CTGAAAAACTAGTCTAATTGT
8094705 TGATAAGTAT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.38, C:0.14, G:0.12, T:0.36
Consensus pattern (21 bp):
CTGAAAAACTAGTCTAATTGT
Found at i:8102435 original size:31 final size:31
Alignment explanation
Indices: 8102400--8102479 Score: 103
Period size: 31 Copynumber: 2.6 Consensus size: 31
8102390 ATAATCCCTG
*
8102400 AAATTAATTAAATCCTTC-TAAAATAATTAAA
1 AAATTAATTAAATCCTTCATAAAATAAAT-AA
8102431 AAATTAATTAAATCC-TCATAAAATAAATAA
1 AAATTAATTAAATCCTTCATAAAATAAATAA
* *
8102461 TAA-TAATTAAGTCCTTCAT
1 AAATTAATTAAATCCTTCAT
8102480 TAACATTTTT
Statistics
Matches: 44, Mismatches: 3, Indels: 5
0.85 0.06 0.10
Matches are distributed among these distances:
29 10 0.23
30 10 0.23
31 24 0.55
ACGTcount: A:0.53, C:0.11, G:0.01, T:0.35
Consensus pattern (31 bp):
AAATTAATTAAATCCTTCATAAAATAAATAA
Found at i:8102823 original size:16 final size:14
Alignment explanation
Indices: 8102793--8102826 Score: 50
Period size: 16 Copynumber: 2.3 Consensus size: 14
8102783 CTACGTTATA
8102793 ATATATTATATTTC
1 ATATATTATATTTC
8102807 ATATGATTATAATTTC
1 ATAT-ATTAT-ATTTC
8102823 ATAT
1 ATAT
8102827 TATAAATTTA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 4 0.22
15 5 0.28
16 9 0.50
ACGTcount: A:0.38, C:0.06, G:0.03, T:0.53
Consensus pattern (14 bp):
ATATATTATATTTC
Found at i:8106294 original size:11 final size:11
Alignment explanation
Indices: 8106278--8106320 Score: 59
Period size: 11 Copynumber: 3.7 Consensus size: 11
8106268 AACACTATTT
8106278 TTTTAAAAAAA
1 TTTTAAAAAAA
8106289 TTTTAAAAAAGTA
1 TTTTAAAAAA--A
*
8106302 TTTTAAAAATA
1 TTTTAAAAAAA
8106313 TTTTAAAA
1 TTTTAAAA
8106321 TTTAAAAAAT
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
11 19 0.66
13 10 0.34
ACGTcount: A:0.56, C:0.00, G:0.02, T:0.42
Consensus pattern (11 bp):
TTTTAAAAAAA
Found at i:8107765 original size:228 final size:227
Alignment explanation
Indices: 8107346--8107867 Score: 529
Period size: 226 Copynumber: 2.3 Consensus size: 227
8107336 AGCTTCAAAG
*
8107346 ACATTAGTGGCGCTTCAAACAAAACGCCGCAAAAGTCAAACATTAGCGGCGCTTTTACAAAAGCG
1 ACATTAGTGGCGCTTCAAACAAAACGCCGCAAAAGTCAAACATTAGCGGCGCTTTAACAAAAGCG
* * * ** *
8107411 CCTAAAAACTGTTAAACAGACGACGACGTTTTATTTTAGGTTTAGAGACATTAGTGGCGTTTATA
66 CCCAAAAACTGTTAAACAAAAGACGACGTTTTATTTTAGCATTAGAGACATTAGTGGCGTTTACA
* * * * * *
8107476 AGGAAACGCCGCAAAAGATCATGTATTAGCGGCGCTTTCTCCGAAGCGCCACAAAAGTTTTA-TC
131 AGAAAAAGCCGCAAAAGATCAAGCATTACCGGCGCTTTCTCCGAAGCGCCACAAAAGTTTTAGGC
* * *
8107540 AAACGACGTCGTTTCCATGTTGAGGTTTAGAC
196 AAACGACGACGTTTCCATGTTAAGATTTAGAC
* * * ** **
8107572 ACATTAGTGGCGCTTTACATAAAACGCCGCGTAAGTCAAACATTAGCGGCGC-TTAAGGAAAGCG
1 ACATTAGTGGCGCTTCAAACAAAACGCCGCAAAAGTCAAACATTAGCGGCGCTTTAACAAAAGCG
* * * * *
8107636 CCGCAAAAAGTTTTAAGCAAAAGGCGTCGTTTT-TCTGTTGAGCATTAGAGACATTAGTGGCGCT
66 CC-CAAAAACTGTTAAACAAAAGACGACGTTTTAT-T-TT-AGCATTAGAGACATTAGTGGCG-T
* * *
8107700 TTGCAA-AAAAAGCCGCAAAAG-TCAAAGCATTACCGGCGCTTTCT-CGAAAGTGCCACAATAGT
126 TTACAAGAAAAAGCCGCAAAAGATC-AAGCATTACCGGCGCTTTCTCCG-AAGCGCCACAAAAGT
* * * *
8107762 TTTAGGCAAACGACGACGTTTTCTTTTTAAGATTTAGAG
189 TTTAGGCAAACGACGACGTTTCCATGTTAAGATTTAGAC
* ** * * **
8107801 ACATTAGTGGAGCATTC-CTCAAAACGTCGCAAAAGTCAAGA-ATTAGCGGTGCTTTCGCAAAAG
1 ACATTAGTGGCGC-TTCAAACAAAACGCCGCAAAAGTCAA-ACATTAGCGGCGCTTTAACAAAAG
8107864 CGCC
64 CGCC
8107868 GTAAAAGTTT
Statistics
Matches: 238, Mismatches: 47, Indels: 18
0.79 0.16 0.06
Matches are distributed among these distances:
225 12 0.05
226 70 0.29
227 6 0.03
228 67 0.28
229 70 0.29
230 13 0.05
ACGTcount: A:0.32, C:0.21, G:0.22, T:0.25
Consensus pattern (227 bp):
ACATTAGTGGCGCTTCAAACAAAACGCCGCAAAAGTCAAACATTAGCGGCGCTTTAACAAAAGCG
CCCAAAAACTGTTAAACAAAAGACGACGTTTTATTTTAGCATTAGAGACATTAGTGGCGTTTACA
AGAAAAAGCCGCAAAAGATCAAGCATTACCGGCGCTTTCTCCGAAGCGCCACAAAAGTTTTAGGC
AAACGACGACGTTTCCATGTTAAGATTTAGAC
Found at i:8107880 original size:115 final size:113
Alignment explanation
Indices: 8107344--8108065 Score: 515
Period size: 115 Copynumber: 6.3 Consensus size: 113
8107334 TGAGCTTCAA
* **
8107344 AGACATTAGTGGCGC-TTCAAACAAAACGCCGCAAAAGTCAA-ACATTAGCGGCGCTTTTACAAA
1 AGACATTAGTGGCGCTTTCATA-AAAACGCCGCAAAAGTCAAGA-ATTAGCGGCGCTTTCGCAAA
* * * *
8107407 AGCGCCTA-AAAACTGTTAAACAGACGACGACGTTTTATT-TT-AGGTTTAG
64 AGCGCC-ACAAAAGTTTTAAGCAAACGACGACGTTTT-TTGTTAAGGTTTAG
* * * **
8107456 AGACATTAGTGGCG-TTT-ATAAGGAAACGCCGCAAAAGATCATGTATTAGCGGCGCTTTCTCCG
1 AGACATTAGTGGCGCTTTCATAA--AAACGCCGCAAAAG-TCAAGAATTAGCGGCGCTTTCGCAA
* * ** *
8107519 AAGCGCCACAAAAGTTTT-ATCAAACGACGTCGTTTCCATGTTGAGGTTTAG
63 AAGCGCCACAAAAGTTTTAAGCAAACGACGACGTTT-TTTGTTAAGGTTTAG
* ** ** *
8107570 ACACATTAGTGGCGCTTTACAT-AAAACGCCGCGTAAGTCAA-ACATTAGCGGCGCTTAAG-GAA
1 AGACATTAGTGGCGCTTT-CATAAAAACGCCGCAAAAGTCAAGA-ATTAGCGGCGCTTTCGCAAA
* * * * * **
8107632 AGCGCCGCAAAAAGTTTTAAGCAAAAGGCGTCGTTTTTCTGTTGAGCATTAG
64 AGCGCCAC-AAAAGTTTTAAGCAAACGACGACGTTTTT-TGTTAAGGTTTAG
* * * * *
8107684 AGACATTAGTGGCGCTTTGCA-AAAAAAGCCGCAAAAGTCAAAGCATTACCGGCGCTTTCTCGAA
1 AGACATTAGTGGCGCTTT-CATAAAAACGCCGCAAAAGTC-AAGAATTAGCGGCGCTTTCGCAAA
* * * * *
8107748 AGTGCCACAATAGTTTTAGGCAAACGACGACGTTTTCTTTTTAAGATTTAG
64 AGCGCCACAAAAGTTTTAAGCAAACGACGACGTTTT-TTGTTAAGGTTTAG
* * * * * *
8107799 AGACATTAGTGGAGCATTCCTCAAAACGTCGCAAAAGTCAAGAATTAGCGGTGCTTTCGCAAAAG
1 AGACATTAGTGGCGCTTTCATAAAAACGCCGCAAAAGTCAAGAATTAGCGGCGCTTTCGCAAAAG
** * *
8107864 CGCCGTAAAAGTTTTTAAGCAAACGACAATGTTTTGTTGTTAAGGTTTAG
66 CGCCACAAAAG-TTTTAAGCAAACGACGACGTTTT-TTGTTAAGGTTTAG
* * * * * *
8107914 -GCACATTAGCGGCGCAATT-ATAAAAACGCCG-AAGGAGTCAAGCAA-CAGCGGCGTTTTCCCA
1 AG-ACATTAGTGGCGC-TTTCATAAAAACGCCGCAA-AAGTCAAG-AATTAGCGGCGCTTTCGCA
* * * ** ** *
8107975 AAAGCGCCGCAAAAAGATTTAAGCAAACGGC-ATCGTTTTGGAGTGGATGTTTAG
62 AAAGCGCCAC-AAAAGTTTTAAGCAAACGACGA-CGTTTT-TTGTTAAGGTTTAG
*
8108029 AGACATTAGTGGCGCTTTACAAAAAAACGCCGCAAAA
1 AGACATTAGTGGCGCTTT-CATAAAAACGCCGCAAAA
8108066 AGTTAAGCAA
Statistics
Matches: 480, Mismatches: 97, Indels: 62
0.75 0.15 0.10
Matches are distributed among these distances:
110 1 0.00
111 2 0.00
112 54 0.11
113 59 0.12
114 126 0.26
115 200 0.42
116 34 0.07
117 4 0.01
ACGTcount: A:0.33, C:0.20, G:0.23, T:0.25
Consensus pattern (113 bp):
AGACATTAGTGGCGCTTTCATAAAAACGCCGCAAAAGTCAAGAATTAGCGGCGCTTTCGCAAAAG
CGCCACAAAAGTTTTAAGCAAACGACGACGTTTTTTGTTAAGGTTTAG
Found at i:8108247 original size:39 final size:39
Alignment explanation
Indices: 8108165--8108248 Score: 150
Period size: 39 Copynumber: 2.2 Consensus size: 39
8108155 TGTTTAAGTG
* *
8108165 TTAAAGTTTATAGTTTATATATGTTTTATGATTCAGGGT
1 TTAAGGTTTATAGTTTATATATGTTCTATGATTCAGGGT
8108204 TTAAGGTTTATAGTTTATATATGTTCTATGATTCAGGGT
1 TTAAGGTTTATAGTTTATATATGTTCTATGATTCAGGGT
8108243 TTAAGG
1 TTAAGG
8108249 AATACGAGTT
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
39 43 1.00
ACGTcount: A:0.27, C:0.04, G:0.20, T:0.49
Consensus pattern (39 bp):
TTAAGGTTTATAGTTTATATATGTTCTATGATTCAGGGT
Found at i:8108318 original size:21 final size:22
Alignment explanation
Indices: 8108293--8108337 Score: 65
Period size: 21 Copynumber: 2.1 Consensus size: 22
8108283 GAGTTGGGAT
* *
8108293 TTAAGGTTTAGGTGTTT-GGGG
1 TTAAGGGTTAGGGGTTTAGGGG
8108314 TTAAGGGTTAGGGGTTTAGGGG
1 TTAAGGGTTAGGGGTTTAGGGG
8108336 TT
1 TT
8108338 TATAGTTAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 15 0.71
22 6 0.29
ACGTcount: A:0.16, C:0.00, G:0.44, T:0.40
Consensus pattern (22 bp):
TTAAGGGTTAGGGGTTTAGGGG
Found at i:8110421 original size:46 final size:46
Alignment explanation
Indices: 8110354--8110537 Score: 316
Period size: 46 Copynumber: 4.0 Consensus size: 46
8110344 CATGGCAAAG
*
8110354 TGTGAAAAGTAGGTATGGTGTTTGGGTGAAGAAAACCATACTGAGT
1 TGTGAAAAGTAGGTATGGTGTTTCGGTGAAGAAAACCATACTGAGT
8110400 TGTGAAAAGTAGGTATGGTGTTTCGGTGAAGAAAACCATACTGAGT
1 TGTGAAAAGTAGGTATGGTGTTTCGGTGAAGAAAACCATACTGAGT
*
8110446 TGTGAAAAGTAGGTATGGTGTTTCAGTGAAGAAAACCATACTGAGT
1 TGTGAAAAGTAGGTATGGTGTTTCGGTGAAGAAAACCATACTGAGT
* * *
8110492 TGTGAAAAGTAGGTATGGTATTTCCGTG-AGAAAGCCATACTGAGT
1 TGTGAAAAGTAGGTATGGTGTTTCGGTGAAGAAAACCATACTGAGT
8110537 T
1 T
8110538 ATAGCATGAG
Statistics
Matches: 133, Mismatches: 5, Indels: 1
0.96 0.04 0.01
Matches are distributed among these distances:
45 17 0.13
46 116 0.87
ACGTcount: A:0.33, C:0.09, G:0.30, T:0.29
Consensus pattern (46 bp):
TGTGAAAAGTAGGTATGGTGTTTCGGTGAAGAAAACCATACTGAGT
Found at i:8112519 original size:29 final size:29
Alignment explanation
Indices: 8112482--8112556 Score: 105
Period size: 29 Copynumber: 2.6 Consensus size: 29
8112472 CCCTAAATCC
* * * *
8112482 AGTTTTTCAAATCTTCATCTCGTCGGTTT
1 AGTTATTCAATTCTTCATCTCATAGGTTT
*
8112511 AGTTATTCATTTCTTCATCTCATAGGTTT
1 AGTTATTCAATTCTTCATCTCATAGGTTT
8112540 AGTTATTCAATTCTTCA
1 AGTTATTCAATTCTTCA
8112557 CAGCATTTAG
Statistics
Matches: 40, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
29 40 1.00
ACGTcount: A:0.21, C:0.19, G:0.11, T:0.49
Consensus pattern (29 bp):
AGTTATTCAATTCTTCATCTCATAGGTTT
Found at i:8113525 original size:13 final size:13
Alignment explanation
Indices: 8113507--8113544 Score: 51
Period size: 13 Copynumber: 2.9 Consensus size: 13
8113497 GAAGTTCTGC
8113507 TTAATGTTGCTGG
1 TTAATGTTGCTGG
*
8113520 TTAATGTTAG-GGG
1 TTAATGTT-GCTGG
8113533 TTAATGTTGCTG
1 TTAATGTTGCTG
8113545 CAAGTTCTTT
Statistics
Matches: 21, Mismatches: 2, Indels: 4
0.78 0.07 0.15
Matches are distributed among these distances:
12 1 0.05
13 19 0.90
14 1 0.05
ACGTcount: A:0.18, C:0.05, G:0.32, T:0.45
Consensus pattern (13 bp):
TTAATGTTGCTGG
Found at i:8113973 original size:34 final size:32
Alignment explanation
Indices: 8113930--8114018 Score: 101
Period size: 31 Copynumber: 2.7 Consensus size: 32
8113920 ATATAAAGGA
8113930 TTTTAATTGGTTTTTGCAGCTAATTAGATAGTACC
1 TTTT-ATTGGTTTTTGCAGCTAA--AGATAGTACC
*
8113965 TTTTATTGGTTTTTGCTA-CT-AAGATGGTACC
1 TTTTATTGGTTTTTGC-AGCTAAAGATAGTACC
* *
8113996 TTTTATTGTTTTTTGCTGCTAAA
1 TTTTATTGGTTTTTGCAGCTAAA
8114019 TCAATATACA
Statistics
Matches: 48, Mismatches: 3, Indels: 9
0.80 0.05 0.15
Matches are distributed among these distances:
31 26 0.54
32 2 0.04
33 1 0.02
34 14 0.29
35 5 0.10
ACGTcount: A:0.21, C:0.11, G:0.17, T:0.51
Consensus pattern (32 bp):
TTTTATTGGTTTTTGCAGCTAAAGATAGTACC
Found at i:8114376 original size:67 final size:67
Alignment explanation
Indices: 8114234--8114369 Score: 159
Period size: 67 Copynumber: 2.0 Consensus size: 67
8114224 TATTAATATG
* * *
8114234 GATATATAACCTATATTTCAATTTTATTAATAATAAATTTTATAATTTTAAAAATAAATGTAAAT
1 GATATATAACCTATATTCCAAATTTATTAATAATAAATTTTATAATTTTAAAAATAAATATAAAT
**
8114299 TG
66 AA
* ***
8114301 GATATATAACCTATATTCCAAATTTATTAGTAA-ACAATTTT-TAATTTTTAAAAATGGTTATAA
1 GATATATAACCTATATTCCAAATTTATTAATAATA-AATTTTATAA-TTTTAAAAATAAATATAA
8114364 ATAA
64 ATAA
8114368 GA
1 GA
8114370 AGTATAAAAG
Statistics
Matches: 58, Mismatches: 9, Indels: 4
0.82 0.13 0.06
Matches are distributed among these distances:
66 4 0.07
67 54 0.93
ACGTcount: A:0.46, C:0.06, G:0.06, T:0.43
Consensus pattern (67 bp):
GATATATAACCTATATTCCAAATTTATTAATAATAAATTTTATAATTTTAAAAATAAATATAAAT
AA
Found at i:8114458 original size:7 final size:7
Alignment explanation
Indices: 8114386--8114410 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
8114376 AAAGTGATAT
8114386 ATAATAC
1 ATAATAC
8114393 ATAATAC
1 ATAATAC
8114400 ATAATAC
1 ATAATAC
8114407 ATAA
1 ATAA
8114411 ATTTATCAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.60, C:0.12, G:0.00, T:0.28
Consensus pattern (7 bp):
ATAATAC
Found at i:8114488 original size:52 final size:55
Alignment explanation
Indices: 8114390--8114503 Score: 139
Period size: 52 Copynumber: 2.1 Consensus size: 55
8114380 TGATATATAA
* *
8114390 TACATAATACATAATACATAAATTTATCAATCATATAATACATTATATACAAACT
1 TACATAATACATAATAAATAAATATATCAATCATATAATACATTATATACAAACT
*
8114445 TACATAATACATAACTTAAAT-AATATA-CAAT-ATATAA-AC-TTATATATAAACT
1 TACATAATACATAA--TAAATAAATATATCAATCATATAATACATTATATACAAACT
*
8114497 TGCATAA
1 TACATAA
8114504 CTTATATAAT
Statistics
Matches: 53, Mismatches: 4, Indels: 7
0.83 0.06 0.11
Matches are distributed among these distances:
52 18 0.34
53 2 0.04
54 6 0.11
55 18 0.34
56 5 0.09
57 4 0.08
ACGTcount: A:0.52, C:0.13, G:0.01, T:0.34
Consensus pattern (55 bp):
TACATAATACATAATAAATAAATATATCAATCATATAATACATTATATACAAACT
Found at i:8114554 original size:9 final size:9
Alignment explanation
Indices: 8114542--8114657 Score: 130
Period size: 9 Copynumber: 12.7 Consensus size: 9
8114532 AAACATAGCC
8114542 TACATAACT
1 TACATAACT
8114551 TACATAACT
1 TACATAACT
*
8114560 TACATAAAT
1 TACATAACT
*
8114569 TAAATAACT
1 TACATAACT
8114578 TACATAACGT
1 TACATAAC-T
8114588 ACGTACATAA--
1 ---TACATAACT
8114598 TACATAACCT
1 TACATAA-CT
8114608 TAC-TAACT
1 TACATAACT
8114616 TACATAACT
1 TACATAACT
*
8114625 TACATAAAT
1 TACATAACT
*
8114634 TAAATAACT
1 TACATAACT
8114643 TACATAACT
1 TACATAACT
8114652 TACATA
1 TACATA
8114658 CATAATACAT
Statistics
Matches: 91, Mismatches: 8, Indels: 16
0.79 0.07 0.14
Matches are distributed among these distances:
7 7 0.08
8 5 0.05
9 68 0.75
10 4 0.04
13 7 0.08
ACGTcount: A:0.47, C:0.19, G:0.02, T:0.32
Consensus pattern (9 bp):
TACATAACT
Found at i:8114603 original size:65 final size:64
Alignment explanation
Indices: 8114527--8114685 Score: 246
Period size: 65 Copynumber: 2.4 Consensus size: 64
8114517 ATAATAACTA
* * *
8114527 ACATAAAACATAGCCTACATAACTTACATAACTTACATAAATTAAATAACTTACATAACGTACGT
1 ACATAATACATAACCTAC-TAACTTACATAACTTACATAAATTAAATAACTTACATAACGTACAT
*
8114592 ACATAATACATAACCTTACTAACTTACATAACTTACATAAATTAAATAACTTACATAACTTACAT
1 ACATAATACATAACC-TACTAACTTACATAACTTACATAAATTAAATAACTTACATAACGTACAT
*
8114657 ACATAATACATAACCTTCCTAACTTACAT
1 ACATAATACATAACC-TACTAACTTACAT
8114686 TATACACAAC
Statistics
Matches: 88, Mismatches: 5, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
65 85 0.97
66 3 0.03
ACGTcount: A:0.47, C:0.21, G:0.02, T:0.30
Consensus pattern (64 bp):
ACATAATACATAACCTACTAACTTACATAACTTACATAAATTAAATAACTTACATAACGTACAT
Found at i:8114615 original size:38 final size:36
Alignment explanation
Indices: 8114573--8114685 Score: 109
Period size: 38 Copynumber: 3.3 Consensus size: 36
8114563 ATAAATTAAA
8114573 TAACTTACATAACGTACGTACATAATACATAACCTTAC
1 TAACTTACATAAC-TAC-TACATAATACATAACCTTAC
*
8114611 TAACTTACATAACT--TACATAA-A-TTAA----A-
1 TAACTTACATAACTACTACATAATACATAACCTTAC
*
8114638 TAACTTACATAACTTACATACATAATACATAACCTTCC
1 TAACTTACATAAC-TAC-TACATAATACATAACCTTAC
8114676 TAACTTACAT
1 TAACTTACAT
8114686 TATACACAAC
Statistics
Matches: 61, Mismatches: 3, Indels: 22
0.71 0.03 0.26
Matches are distributed among these distances:
27 13 0.21
28 2 0.03
31 7 0.11
32 4 0.07
33 4 0.07
34 7 0.11
37 1 0.02
38 23 0.38
ACGTcount: A:0.44, C:0.22, G:0.02, T:0.32
Consensus pattern (36 bp):
TAACTTACATAACTACTACATAATACATAACCTTAC
Found at i:8114747 original size:25 final size:25
Alignment explanation
Indices: 8114719--8114785 Score: 89
Period size: 25 Copynumber: 2.7 Consensus size: 25
8114709 ATTAATATTA
*
8114719 TACACAACTTACATAATACATTACT
1 TACACAACTTACATAATACATAACT
**
8114744 TACAGTACTTACATAATACATAACT
1 TACACAACTTACATAATACATAACT
**
8114769 TACGTAACTTACATAAT
1 TACACAACTTACATAAT
8114786 TTTATTTTAC
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
25 36 1.00
ACGTcount: A:0.43, C:0.21, G:0.03, T:0.33
Consensus pattern (25 bp):
TACACAACTTACATAATACATAACT
Found at i:8114962 original size:43 final size:42
Alignment explanation
Indices: 8114855--8114986 Score: 124
Period size: 43 Copynumber: 3.1 Consensus size: 42
8114845 ACCAAACAAC
*
8114855 AGCGGCGTT-TGTGGAGAAAGCGCCGGTAAAGAACATGACCTTT
1 AGCGGCGTTGT-TGGA-AAAGCGCCGCTAAAGAACATGACCTTT
* * * *
8114898 AGTGACGTT-TTCGAAAAAAGCGCCACTAAAGAACATGACCTTT
1 AGCGGCGTTGTT-G-GAAAAGCGCCGCTAAAGAACATGACCTTT
* * * *
8114941 AGCGGCGTGTGTTGGATAAGCGCTGCTAAATAACATGATCTTT
1 AGCGGCGT-TGTTGGAAAAGCGCCGCTAAAGAACATGACCTTT
8114984 AGC
1 AGC
8114987 AATAAACGCA
Statistics
Matches: 72, Mismatches: 13, Indels: 8
0.77 0.14 0.09
Matches are distributed among these distances:
42 1 0.01
43 66 0.92
44 3 0.04
45 2 0.03
ACGTcount: A:0.30, C:0.19, G:0.27, T:0.24
Consensus pattern (42 bp):
AGCGGCGTTGTTGGAAAAGCGCCGCTAAAGAACATGACCTTT
Found at i:8115782 original size:22 final size:22
Alignment explanation
Indices: 8115751--8115796 Score: 65
Period size: 22 Copynumber: 2.1 Consensus size: 22
8115741 TGGGGGGCGC
* *
8115751 GCAGAGAATGTTAGCACCAAAG
1 GCAGAAAATGTCAGCACCAAAG
*
8115773 GCAGAAAATGTCAGCACCAGAG
1 GCAGAAAATGTCAGCACCAAAG
8115795 GC
1 GC
8115797 CCCAAGACCA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.39, C:0.22, G:0.28, T:0.11
Consensus pattern (22 bp):
GCAGAAAATGTCAGCACCAAAG
Found at i:8130330 original size:451 final size:451
Alignment explanation
Indices: 8129482--8130387 Score: 1650
Period size: 451 Copynumber: 2.0 Consensus size: 451
8129472 ATTTAAAGAA
* * *
8129482 TTTAAGCACGTGGTAGCTTCAAATTTCCTAACCACCTAGGTAAGACATAGTGTGGTTAGAAATGG
1 TTTAAACACGTGGTAGCTTCAAATTTCCTAACCACCTAGGTAAGACACAGTGCGGTTAGAAATGG
* * * *
8129547 TGATATAAATTTTTAGGGTTCAACAATTGGTTGTAGACTTGGTATTGTTGACATATGCTTATTGT
66 TGATAGAAATTTTTAGGGTTCAACAATCGGTTGTAGACTTGGTATTGTAGACATATGCATATTGT
* *
8129612 AGATTTGGTTATGTCAATGAAACTTGGATAGCCAAGTTACGTAAACAAAGCTATGATTATGAATT
131 AGATTTGGTTATGTCAATGAAACTTGGATAGCCAAGTTACATAAACAAAGCTATGACTATGAATT
* *
8129677 ATGTGAAATTATTTGGAACATGTGAATATTGTCTCATTGATAAAATGATTGACCCCTTTACTGGA
196 ATGTGAAATCATTTGGAACATGTGAATATTGTCTCATTGATAAAATGACTGACCCCTTTACTGGA
*
8129742 AAATGTGAAAAGGGTTGGAGATTTAGTAAGGGCCAGTTCTTCATTGCTTAAAAAAAGTACTTCTG
261 AAAGGTGAAAAGGGTTGGAGATTTAGTAAGGGCCAGTTCTTCATTGCTTAAAAAAAGTACTTCTG
* *
8129807 ATTCCAAAAGCACTTTTGAAAGAAAAGCTGTGAAGAATAAGCTGCTTTTGGCTGAAATTTTTAGC
326 ACTCCAAAAGCACTTTTGAAAGAAAAGCTGTGAAGAACAAGCTGCTTTTGGCTGAAATTTTTAGC
8129872 TTTTCAGAAGTGCTTTTCAAAAGCACTTCTGAAAAGGAGTTGAAAAGGAGAAGCTAAAAAT
391 TTTTCAGAAGTGCTTTTCAAAAGCACTTCTGAAAAGGAGTTGAAAAGGAGAAGCTAAAAAT
*
8129933 TTTAAACACGTGGTAGCTTCAAATTTCCTAACCACCTAGGTAAGAGACAGTGCGGTTAGAAATGG
1 TTTAAACACGTGGTAGCTTCAAATTTCCTAACCACCTAGGTAAGACACAGTGCGGTTAGAAATGG
*
8129998 TGATAGAAATTTTTAGGGTTCAACAATCGGTTGTAGACTTGGTATTGTAGACATATGCATCTTGT
66 TGATAGAAATTTTTAGGGTTCAACAATCGGTTGTAGACTTGGTATTGTAGACATATGCATATTGT
8130063 AGATTTGGTTATGTCAATGAAACTTGGATAGCCAAGTTACATAAACAAAGCTATGACTATGAATT
131 AGATTTGGTTATGTCAATGAAACTTGGATAGCCAAGTTACATAAACAAAGCTATGACTATGAATT
8130128 ATGTGAAATCATTTGGAACATGTGAATATTGTCTCATTGATAAAATGACTGACCCCTTTACTGGA
196 ATGTGAAATCATTTGGAACATGTGAATATTGTCTCATTGATAAAATGACTGACCCCTTTACTGGA
*
8130193 AAAGGTGAAAAGGGTTGGAGATTTATTAAGGGCCAGTTCTTCATTGCTTAAAAAAAGTACTTCTG
261 AAAGGTGAAAAGGGTTGGAGATTTAGTAAGGGCCAGTTCTTCATTGCTTAAAAAAAGTACTTCTG
*
8130258 ACTCCAAAAGCACTTTTGAAAGAAAAGTTGTGAAGAACAAGCTGCTTTTGGCTGAAATTTTTAGC
326 ACTCCAAAAGCACTTTTGAAAGAAAAGCTGTGAAGAACAAGCTGCTTTTGGCTGAAATTTTTAGC
8130323 TTTTCAGAAGTGCTTTTCAAAAGCACTTCTGAAAAGGAGTTGAAAAGGAGAAGCTAAAAAT
391 TTTTCAGAAGTGCTTTTCAAAAGCACTTCTGAAAAGGAGTTGAAAAGGAGAAGCTAAAAAT
8130384 TTTA
1 TTTA
8130388 GCTTTTCCTC
Statistics
Matches: 437, Mismatches: 18, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
451 437 1.00
ACGTcount: A:0.34, C:0.13, G:0.21, T:0.32
Consensus pattern (451 bp):
TTTAAACACGTGGTAGCTTCAAATTTCCTAACCACCTAGGTAAGACACAGTGCGGTTAGAAATGG
TGATAGAAATTTTTAGGGTTCAACAATCGGTTGTAGACTTGGTATTGTAGACATATGCATATTGT
AGATTTGGTTATGTCAATGAAACTTGGATAGCCAAGTTACATAAACAAAGCTATGACTATGAATT
ATGTGAAATCATTTGGAACATGTGAATATTGTCTCATTGATAAAATGACTGACCCCTTTACTGGA
AAAGGTGAAAAGGGTTGGAGATTTAGTAAGGGCCAGTTCTTCATTGCTTAAAAAAAGTACTTCTG
ACTCCAAAAGCACTTTTGAAAGAAAAGCTGTGAAGAACAAGCTGCTTTTGGCTGAAATTTTTAGC
TTTTCAGAAGTGCTTTTCAAAAGCACTTCTGAAAAGGAGTTGAAAAGGAGAAGCTAAAAAT
Found at i:8130856 original size:13 final size:13
Alignment explanation
Indices: 8130840--8130870 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
8130830 TAAACCAAAA
8130840 TTTTCAAAAGCAC
1 TTTTCAAAAGCAC
*
8130853 TTTTAAAAAGCAC
1 TTTTCAAAAGCAC
8130866 TTTTC
1 TTTTC
8130871 CACAGTATAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.35, C:0.19, G:0.06, T:0.39
Consensus pattern (13 bp):
TTTTCAAAAGCAC
Found at i:8133576 original size:24 final size:24
Alignment explanation
Indices: 8133530--8133593 Score: 110
Period size: 24 Copynumber: 2.6 Consensus size: 24
8133520 CGAATTATAT
8133530 ATCAAATATATATATTTTATTTTTA
1 ATCAAATATATAT-TTTTATTTTTA
8133555 ATCAAATATATATTTTTATTTTTA
1 ATCAAATATATATTTTTATTTTTA
*
8133579 AGCAAATATATATTT
1 ATCAAATATATATTT
8133594 AATATGGGCC
Statistics
Matches: 38, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
24 25 0.66
25 13 0.34
ACGTcount: A:0.41, C:0.05, G:0.02, T:0.53
Consensus pattern (24 bp):
ATCAAATATATATTTTTATTTTTA
Found at i:8139610 original size:56 final size:56
Alignment explanation
Indices: 8139537--8139649 Score: 163
Period size: 56 Copynumber: 2.0 Consensus size: 56
8139527 TAATTACGAG
* * * *
8139537 ATTGAATTATATCTGTCATTGGGTGTGAAATTTTATAGAAGCATTTCAAGTATATT
1 ATTGAATGATATCTGTCATTGGGTATGAAATTGTACAGAAGCATTTCAAGTATATT
* **
8139593 ATTGAATGATATTTGTCATTGGGTATGAAATTGTACAGAAGCATTTTGAGTATATT
1 ATTGAATGATATCTGTCATTGGGTATGAAATTGTACAGAAGCATTTCAAGTATATT
8139649 A
1 A
8139650 GTCGAGATTT
Statistics
Matches: 50, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
56 50 1.00
ACGTcount: A:0.33, C:0.06, G:0.19, T:0.42
Consensus pattern (56 bp):
ATTGAATGATATCTGTCATTGGGTATGAAATTGTACAGAAGCATTTCAAGTATATT
Found at i:8145421 original size:43 final size:43
Alignment explanation
Indices: 8145374--8145509 Score: 118
Period size: 43 Copynumber: 3.2 Consensus size: 43
8145364 TAATGCAGGA
8145374 AGGCAAGATCTGCTTCTTTAACCAGCTCCACTACAACCGATGG
1 AGGCAAGATCTGCTTCTTTAACCAGCTCCACTACAACCGATGG
* * ** * * * * **
8145417 AGGCAAGGCTTTG-TT-TTCGATCTGCTTCGCTGTTAACAC-A-GG
1 AGGCAA-GATCTGCTTCTTTAACCAGCTCCACT-ACAAC-CGATGG
8145459 AAGGCAAGATCTGCTTCTTTAACCAGCTCCACTACAACCGATGG
1 -AGGCAAGATCTGCTTCTTTAACCAGCTCCACTACAACCGATGG
8145503 AGGCAAG
1 AGGCAAG
8145510 GCTTTGTTTT
Statistics
Matches: 65, Mismatches: 20, Indels: 16
0.64 0.20 0.16
Matches are distributed among these distances:
42 17 0.26
43 31 0.48
44 17 0.26
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.25
Consensus pattern (43 bp):
AGGCAAGATCTGCTTCTTTAACCAGCTCCACTACAACCGATGG
Found at i:8145424 original size:173 final size:173
Alignment explanation
Indices: 8145172--8145523 Score: 546
Period size: 173 Copynumber: 2.0 Consensus size: 173
8145162 ACTTGTAATC
* * *
8145172 TTCGACCTGCTTCACTGTTGACGCAGAATGGCAAGATCTGCTATCTTTAACCAGCTCCACTGCAA
1 TTCGATCTGCTTCACTGTTAACGCAGAATGGCAAGATCTGCTATCTTTAACCAGCTCCACTACAA
* * *
8145237 CTGATGAAGGCAAGGCTTTGTTTTTGATCTGCTTCACTGTTAACACAGGAATGCAAGATCTACTA
66 CCGATGAAGGCAAGGCTTTGTTTTCGATCTGCTTCACTGTTAACACAGGAAGGCAAGATCTACT-
* *
8145302 TCTTCAACCTGCTCCACTGCAACCGATAGAGGCAAGGCTTTGTT
130 TCTTCAACCAGCTCCACTACAACCGATAGAGGCAAGGCTTTGTT
*
8145346 TTCGATCTGCTTCACTGTTAATGCAGGAA-GGCAAGATCTGCT-TCTTTAACCAGCTCCACTACA
1 TTCGATCTGCTTCACTGTTAACGCA-GAATGGCAAGATCTGCTATCTTTAACCAGCTCCACTACA
* * *
8145409 ACCGATGGAGGCAAGGCTTTGTTTTCGATCTGCTTCGCTGTTAACACAGGAAGGCAAGATCTGCT
65 ACCGATGAAGGCAAGGCTTTGTTTTCGATCTGCTTCACTGTTAACACAGGAAGGCAAGATCTACT
* *
8145474 TCTTTAACCAGCTCCACTACAACCGATGGAGGCAAGGCTTTGTT
130 TCTTCAACCAGCTCCACTACAACCGATAGAGGCAAGGCTTTGTT
8145518 TTCGAT
1 TTCGAT
8145524 TTTCACTGAT
Statistics
Matches: 163, Mismatches: 14, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
172 46 0.28
173 79 0.48
174 35 0.21
175 3 0.02
ACGTcount: A:0.25, C:0.25, G:0.21, T:0.29
Consensus pattern (173 bp):
TTCGATCTGCTTCACTGTTAACGCAGAATGGCAAGATCTGCTATCTTTAACCAGCTCCACTACAA
CCGATGAAGGCAAGGCTTTGTTTTCGATCTGCTTCACTGTTAACACAGGAAGGCAAGATCTACTT
CTTCAACCAGCTCCACTACAACCGATAGAGGCAAGGCTTTGTT
Found at i:8145434 original size:86 final size:87
Alignment explanation
Indices: 8145172--8145523 Score: 530
Period size: 86 Copynumber: 4.1 Consensus size: 87
8145162 ACTTGTAATC
* * * *
8145172 TTCGACCTGCTTCACTGTTGACGCA-GAATGGCAAGATCTGCTATCTTTAACCAGCTCCACTGCA
1 TTCGATCTGCTTCACTGTTAACACAGGAA-GGCAAGATCTGCTATCTTTAACCAGCTCCACTACA
* *
8145236 ACTGATGAAGGCAAGGCTTTGTT
65 ACCGATGGAGGCAAGGCTTTGTT
* * * * * *
8145259 TTTGATCTGCTTCACTGTTAACACAGGAATGCAAGATCTACTATCTTCAACCTGCTCCACTGCAA
1 TTCGATCTGCTTCACTGTTAACACAGGAAGGCAAGATCTGCTATCTTTAACCAGCTCCACTACAA
*
8145324 CCGATAGAGGCAAGGCTTTGTT
66 CCGATGGAGGCAAGGCTTTGTT
**
8145346 TTCGATCTGCTTCACTGTTAATGCAGGAAGGCAAGATCTGCT-TCTTTAACCAGCTCCACTACAA
1 TTCGATCTGCTTCACTGTTAACACAGGAAGGCAAGATCTGCTATCTTTAACCAGCTCCACTACAA
8145410 CCGATGGAGGCAAGGCTTTGTT
66 CCGATGGAGGCAAGGCTTTGTT
*
8145432 TTCGATCTGCTTCGCTGTTAACACAGGAAGGCAAGATCTGCT-TCTTTAACCAGCTCCACTACAA
1 TTCGATCTGCTTCACTGTTAACACAGGAAGGCAAGATCTGCTATCTTTAACCAGCTCCACTACAA
8145496 CCGATGGAGGCAAGGCTTTGTT
66 CCGATGGAGGCAAGGCTTTGTT
8145518 TTCGAT
1 TTCGAT
8145524 TTTCACTGAT
Statistics
Matches: 241, Mismatches: 23, Indels: 3
0.90 0.09 0.01
Matches are distributed among these distances:
86 129 0.54
87 109 0.45
88 3 0.01
ACGTcount: A:0.25, C:0.25, G:0.21, T:0.29
Consensus pattern (87 bp):
TTCGATCTGCTTCACTGTTAACACAGGAAGGCAAGATCTGCTATCTTTAACCAGCTCCACTACAA
CCGATGGAGGCAAGGCTTTGTT
Found at i:8147144 original size:5 final size:6
Alignment explanation
Indices: 8147127--8147169 Score: 50
Period size: 6 Copynumber: 7.2 Consensus size: 6
8147117 TTGCTTTTCA
* * * *
8147127 TATTTT TATTTT TATTTT GACTTT GATTTT TATTTT TCTTTT T
1 TATTTT TATTTT TATTTT TATTTT TATTTT TATTTT TATTTT T
8147170 CTTTGACCCC
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
6 32 1.00
ACGTcount: A:0.14, C:0.05, G:0.05, T:0.77
Consensus pattern (6 bp):
TATTTT
Found at i:8149586 original size:20 final size:21
Alignment explanation
Indices: 8149544--8149587 Score: 54
Period size: 20 Copynumber: 2.1 Consensus size: 21
8149534 TCCTTTTGCA
8149544 TTTGCTCCAGTTTCTCTAATC
1 TTTGCTCCAGTTTCTCTAATC
* * *
8149565 TTTGGTCCA-TTTCTTTAGTC
1 TTTGCTCCAGTTTCTCTAATC
8149585 TTT
1 TTT
8149588 CGACGAGTAC
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
20 12 0.60
21 8 0.40
ACGTcount: A:0.11, C:0.23, G:0.11, T:0.55
Consensus pattern (21 bp):
TTTGCTCCAGTTTCTCTAATC
Found at i:8151470 original size:26 final size:23
Alignment explanation
Indices: 8151427--8151477 Score: 66
Period size: 26 Copynumber: 2.1 Consensus size: 23
8151417 ATTAAAATCT
*
8151427 AACCTAAAAAAAAGAAAAGAGAA
1 AACCTAAAAAAAAGAAAAGAAAA
8151450 AACCTAAACTAAAAATGAAAAGAAAA
1 AACCTAAA--AAAAA-GAAAAGAAAA
8151476 AA
1 AA
8151478 AGAGAAAAGA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
23 8 0.33
25 5 0.21
26 11 0.46
ACGTcount: A:0.73, C:0.10, G:0.10, T:0.08
Consensus pattern (23 bp):
AACCTAAAAAAAAGAAAAGAAAA
Found at i:8158574 original size:2 final size:2
Alignment explanation
Indices: 8158567--8158618 Score: 104
Period size: 2 Copynumber: 26.0 Consensus size: 2
8158557 AATTCAAAAG
8158567 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
8158609 AT AT AT AT AT
1 AT AT AT AT AT
8158619 GTGTGTGTGT
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 50 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:8159483 original size:16 final size:15
Alignment explanation
Indices: 8159449--8159483 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
8159439 TTTTGTTTTG
**
8159449 AAAAATAAATGAAGT
1 AAAAATAAAACAAGT
8159464 AAAAATAAAACAAGT
1 AAAAATAAAACAAGT
8159479 AAAAA
1 AAAAA
8159484 CAACAGATCT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.74, C:0.03, G:0.09, T:0.14
Consensus pattern (15 bp):
AAAAATAAAACAAGT
Found at i:8160278 original size:40 final size:40
Alignment explanation
Indices: 8160227--8160362 Score: 157
Period size: 40 Copynumber: 3.3 Consensus size: 40
8160217 GTTTCTTTCG
*
8160227 TCTGCTCCACTACTGCTTAGAGAGATAAGACTTGATGCGA
1 TCTGCTCCACTACTGCTTAGGGAGATAAGACTTGATGCGA
* ** *
8160267 TCTACTCCACTACTGCTTAGGGAGATAAGATCTGGTTTCTTTCG-
1 TCTGCTCCACTACTGCTTAGGGAGATAAGA-C----TTGATGCGA
* *
8160311 TCTGCTCTACTACTGCTTAGGGAGATAAGACTTGATGTGA
1 TCTGCTCCACTACTGCTTAGGGAGATAAGACTTGATGCGA
8160351 TCTGCTCCACTA
1 TCTGCTCCACTA
8160363 AGAAAGTTGA
Statistics
Matches: 78, Mismatches: 12, Indels: 12
0.76 0.12 0.12
Matches are distributed among these distances:
39 4 0.05
40 39 0.50
41 1 0.01
43 1 0.01
44 28 0.36
45 5 0.06
ACGTcount: A:0.24, C:0.23, G:0.21, T:0.32
Consensus pattern (40 bp):
TCTGCTCCACTACTGCTTAGGGAGATAAGACTTGATGCGA
Found at i:8160308 original size:84 final size:83
Alignment explanation
Indices: 8160200--8160362 Score: 272
Period size: 84 Copynumber: 2.0 Consensus size: 83
8160190 CACTGCAACT
*
8160200 TTAGGGAGATAGGATTGGTTTCTTTCGTCTGCTCCACTACTGCTTAGAGAGATAAGACTTGATGC
1 TTAGGGAGATAAGATTGGTTTCTTTCGTCTGCTCCACTACTGCTTAGAGAGATAAGACTTGATGC
8160265 GATCTACTCCACTACTGC
66 GATCTACTCCACTACTGC
* *
8160283 TTAGGGAGATAAGATCTGGTTTCTTTCGTCTGCTCTACTACTGCTTAGGGAGATAAGACTTGATG
1 TTAGGGAGATAAGAT-TGGTTTCTTTCGTCTGCTCCACTACTGCTTAGAGAGATAAGACTTGATG
* *
8160348 TGATCTGCTCCACTA
65 CGATCTACTCCACTA
8160363 AGAAAGTTGA
Statistics
Matches: 74, Mismatches: 5, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
83 14 0.19
84 60 0.81
ACGTcount: A:0.23, C:0.20, G:0.23, T:0.34
Consensus pattern (83 bp):
TTAGGGAGATAAGATTGGTTTCTTTCGTCTGCTCCACTACTGCTTAGAGAGATAAGACTTGATGC
GATCTACTCCACTACTGC
Found at i:8160327 original size:44 final size:44
Alignment explanation
Indices: 8160200--8160340 Score: 168
Period size: 40 Copynumber: 3.3 Consensus size: 44
8160190 CACTGCAACT
*
8160200 TTAGGGAGATAGGAT-TGGTTTCTTTCGTCTGCTCCACTACTGC
1 TTAGGGAGATAAGATCTGGTTTCTTTCGTCTGCTCCACTACTGC
* ** * *
8160243 TTAGAGAGATAAGA-C----TTGATGCGATCTACTCCACTACTGC
1 TTAGGGAGATAAGATCTGGTTTCTTTCG-TCTGCTCCACTACTGC
*
8160283 TTAGGGAGATAAGATCTGGTTTCTTTCGTCTGCTCTACTACTGC
1 TTAGGGAGATAAGATCTGGTTTCTTTCGTCTGCTCCACTACTGC
8160327 TTAGGGAGATAAGA
1 TTAGGGAGATAAGA
8160341 CTTGATGTGA
Statistics
Matches: 79, Mismatches: 12, Indels: 13
0.76 0.12 0.12
Matches are distributed among these distances:
39 5 0.06
40 28 0.35
41 1 0.01
43 12 0.15
44 28 0.35
45 5 0.06
ACGTcount: A:0.23, C:0.19, G:0.24, T:0.33
Consensus pattern (44 bp):
TTAGGGAGATAAGATCTGGTTTCTTTCGTCTGCTCCACTACTGC
Found at i:8162874 original size:45 final size:45
Alignment explanation
Indices: 8162778--8162897 Score: 125
Period size: 45 Copynumber: 2.7 Consensus size: 45
8162768 TAAAATGAGG
** *
8162778 AAGACCATAGCTGAAAGATGATATTTCATCATGATATAAATAAGT
1 AAGACCATAGCTGAAAGATGATATGGCATCATGATATAAATAACT
* * * *
8162823 AAGACCATAGCTGAAAGTTGTTATGGCATCATGGTA-AATATGACT
1 AAGACCATAGCTGAAAGATGATATGGCATCATGATATAA-ATAACT
* * * *
8162868 ATGACCATAGCTAAAAGACGCTATGGCATC
1 AAGACCATAGCTGAAAGATGATATGGCATC
8162898 CTAATAGTCC
Statistics
Matches: 62, Mismatches: 12, Indels: 2
0.82 0.16 0.03
Matches are distributed among these distances:
44 2 0.03
45 60 0.97
ACGTcount: A:0.39, C:0.15, G:0.19, T:0.27
Consensus pattern (45 bp):
AAGACCATAGCTGAAAGATGATATGGCATCATGATATAAATAACT
Found at i:8165166 original size:14 final size:14
Alignment explanation
Indices: 8165147--8165174 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
8165137 GACTTAGAGA
8165147 TTAAATTATTATTT
1 TTAAATTATTATTT
8165161 TTAAATTATTATTT
1 TTAAATTATTATTT
8165175 AATTGATTTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (14 bp):
TTAAATTATTATTT
Found at i:8169419 original size:23 final size:23
Alignment explanation
Indices: 8169393--8169468 Score: 143
Period size: 23 Copynumber: 3.3 Consensus size: 23
8169383 ATAAGTGCCA
8169393 CACTGATATGTAGCCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
8169416 CACTGATATGTAGCCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
*
8169439 CACTGAAATGTAGCCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
8169462 CACTGAT
1 CACTGAT
8169469 CAATAACACT
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 51 1.00
ACGTcount: A:0.32, C:0.26, G:0.21, T:0.21
Consensus pattern (23 bp):
CACTGATATGTAGCCGAAGCTAC
Found at i:8169568 original size:8 final size:8
Alignment explanation
Indices: 8169555--8169583 Score: 58
Period size: 8 Copynumber: 3.6 Consensus size: 8
8169545 ACCCGGGACT
8169555 CACTGTAA
1 CACTGTAA
8169563 CACTGTAA
1 CACTGTAA
8169571 CACTGTAA
1 CACTGTAA
8169579 CACTG
1 CACTG
8169584 GTCTCTAGTG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.34, C:0.28, G:0.14, T:0.24
Consensus pattern (8 bp):
CACTGTAA
Found at i:8169714 original size:18 final size:17
Alignment explanation
Indices: 8169688--8169726 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 17
8169678 ATTTTCCTTC
8169688 CACATTC-AATATTAATT
1 CACATTCAAATA-TAATT
8169705 CACATATCAAATATAATT
1 CACAT-TCAAATATAATT
8169723 CACA
1 CACA
8169727 ATTTATACAA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
17 5 0.25
18 11 0.55
19 4 0.20
ACGTcount: A:0.46, C:0.21, G:0.00, T:0.33
Consensus pattern (17 bp):
CACATTCAAATATAATT
Found at i:8171399 original size:23 final size:23
Alignment explanation
Indices: 8171347--8171399 Score: 88
Period size: 23 Copynumber: 2.3 Consensus size: 23
8171337 AGTGTTATTG
8171347 ATCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
* *
8171370 TTTAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
8171393 ATCAGTG
1 ATCAGTG
8171400 TGGCACTTAT
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.21, C:0.19, G:0.26, T:0.34
Consensus pattern (23 bp):
ATCAGTGGTAGCTTCGGCTACAT
Found at i:8186255 original size:38 final size:38
Alignment explanation
Indices: 8186204--8186280 Score: 145
Period size: 38 Copynumber: 2.0 Consensus size: 38
8186194 ACAAGCATGC
*
8186204 TGCGTGCAAATCCACTCACTCCAATTAAAGTAAAAGAA
1 TGCGTGAAAATCCACTCACTCCAATTAAAGTAAAAGAA
8186242 TGCGTGAAAATCCACTCACTCCAATTAAAGTAAAAGAA
1 TGCGTGAAAATCCACTCACTCCAATTAAAGTAAAAGAA
8186280 T
1 T
8186281 TTTCACTCTG
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.43, C:0.22, G:0.13, T:0.22
Consensus pattern (38 bp):
TGCGTGAAAATCCACTCACTCCAATTAAAGTAAAAGAA
Found at i:8188696 original size:24 final size:24
Alignment explanation
Indices: 8188669--8188726 Score: 80
Period size: 24 Copynumber: 2.4 Consensus size: 24
8188659 TCATACTCAG
8188669 AATCAGTCATACAAATCACAGACA
1 AATCAGTCATACAAATCACAGACA
** *
8188693 AATCAGTCATTTACATCACAGACA
1 AATCAGTCATACAAATCACAGACA
*
8188717 AATCAATCAT
1 AATCAGTCAT
8188727 TTACATCACG
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 30 1.00
ACGTcount: A:0.47, C:0.24, G:0.07, T:0.22
Consensus pattern (24 bp):
AATCAGTCATACAAATCACAGACA
Found at i:8188727 original size:24 final size:24
Alignment explanation
Indices: 8188683--8188755 Score: 119
Period size: 24 Copynumber: 3.0 Consensus size: 24
8188673 AGTCATACAA
*
8188683 ATCACAGACAAATCAGTCATTTAC
1 ATCACAGACAAATCAATCATTTAC
8188707 ATCACAGACAAATCAATCATTTAC
1 ATCACAGACAAATCAATCATTTAC
* *
8188731 ATCACGGACAAATTAATCATTTAC
1 ATCACAGACAAATCAATCATTTAC
8188755 A
1 A
8188756 CTCGATGGGC
Statistics
Matches: 46, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
24 46 1.00
ACGTcount: A:0.44, C:0.23, G:0.07, T:0.26
Consensus pattern (24 bp):
ATCACAGACAAATCAATCATTTAC
Found at i:8188816 original size:27 final size:27
Alignment explanation
Indices: 8188786--8188996 Score: 133
Period size: 27 Copynumber: 7.8 Consensus size: 27
8188776 TTTACCCTCT
* *
8188786 AGGGGCGTTAGGGTCATTTTACCTTAC
1 AGGGGCATTATGGTCATTTTACCTTAC
* * * *
8188813 AGGGGTATTTTAGTCATTTTACCCTAC
1 AGGGGCATTATGGTCATTTTACCTTAC
* * * *
8188840 AGGGGTATTACGATCATTTTATCTTAC
1 AGGGGCATTATGGTCATTTTACCTTAC
*
8188867 AGAGGCATTATGGTCATTTTACCCTT-C
1 AGGGGCATTATGGTCATTTTA-CCTTAC
* * * *
8188894 -GGCGGTATTACGATCATTTTACCCTA-
1 AGG-GGCATTATGGTCATTTTACCTTAC
* * * * *
8188920 TGGAGG-TTTTTCGATCATTTTACCCTAC
1 AGG-GGCATTAT-GGTCATTTTACCTTAC
* *
8188948 AGGGGTATTACGGTCATTTTACCTTAC
1 AGGGGCATTATGGTCATTTTACCTTAC
* * *
8188975 AGGGGTATTACGGTTATTTTAC
1 AGGGGCATTATGGTCATTTTAC
8188997 AAATATTGGG
Statistics
Matches: 144, Mismatches: 33, Indels: 14
0.75 0.17 0.07
Matches are distributed among these distances:
26 6 0.04
27 131 0.91
28 7 0.05
ACGTcount: A:0.22, C:0.18, G:0.21, T:0.38
Consensus pattern (27 bp):
AGGGGCATTATGGTCATTTTACCTTAC
Found at i:8188857 original size:54 final size:54
Alignment explanation
Indices: 8188799--8188983 Score: 232
Period size: 54 Copynumber: 3.4 Consensus size: 54
8188789 GGCGTTAGGG
8188799 TCATTTTACCTTACAGGGGTATTTTAGTCATTTTACCCTACAGGGGTATTACGA
1 TCATTTTACCTTACAGGGGTATTTTAGTCATTTTACCCTACAGGGGTATTACGA
* * * * * *
8188853 TCATTTTATCTTACAGAGGCATTATGGTCATTTTACCCTTC-GGCGGTATTACGA
1 TCATTTTACCTTACAGGGGTATTTTAGTCATTTTACCCTACAGG-GGTATTACGA
* * * *
8188907 TCATTTTACCCTA-TGGAGGT-TTTTCGATCATTTTACCCTACAGGGGTATTACGG
1 TCATTTTACCTTACAGG-GGTATTTTAG-TCATTTTACCCTACAGGGGTATTACGA
8188961 TCATTTTACCTTACAGGGGTATT
1 TCATTTTACCTTACAGGGGTATT
8188984 ACGGTTATTT
Statistics
Matches: 108, Mismatches: 17, Indels: 11
0.79 0.12 0.08
Matches are distributed among these distances:
53 7 0.06
54 95 0.88
55 6 0.06
ACGTcount: A:0.22, C:0.19, G:0.19, T:0.39
Consensus pattern (54 bp):
TCATTTTACCTTACAGGGGTATTTTAGTCATTTTACCCTACAGGGGTATTACGA
Found at i:8188984 original size:81 final size:80
Alignment explanation
Indices: 8188797--8188996 Score: 228
Period size: 81 Copynumber: 2.5 Consensus size: 80
8188787 GGGGCGTTAG
8188797 GGTCATTTTACCTTACAGGGGTATTTTA-GTCATTTTACCCTACAGGGGTATTACGATCATTTTA
1 GGTCATTTTACCTTACAGGGGTA--TTACGTCATTTTACCCTACAGGGGTATTACGATCATTTTA
* * *
8188861 TCTTACAGAGGCATTAT
64 CCCTACAGAGGCATTAC
* * *
8188878 GGTCATTTTACCCTT-C-GGCGGTATTACGATCATTTTACCCTA-TGGAGGTTTTTCGATCATTT
1 GGTCATTTTA-CCTTACAGG-GGTATTACG-TCATTTTACCCTACAGG-GGTATTACGATCATTT
* *
8188940 TACCCTACAGGGGTATTAC
62 TACCCTACAGAGGCATTAC
*
8188959 GGTCATTTTACCTTACAGGGGTATTACGGTTATTTTAC
1 GGTCATTTTACCTTACAGGGGTATTAC-GTCATTTTAC
8188997 AAATATTGGG
Statistics
Matches: 102, Mismatches: 9, Indels: 16
0.80 0.07 0.13
Matches are distributed among these distances:
79 3 0.03
80 9 0.09
81 83 0.81
82 7 0.07
ACGTcount: A:0.22, C:0.19, G:0.20, T:0.40
Consensus pattern (80 bp):
GGTCATTTTACCTTACAGGGGTATTACGTCATTTTACCCTACAGGGGTATTACGATCATTTTACC
CTACAGAGGCATTAC
Found at i:8195710 original size:21 final size:21
Alignment explanation
Indices: 8195672--8195711 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
8195662 CTAGAATTTA
*
8195672 ATTTAATTTCTTCGAATTATT
1 ATTTAATTACTTCGAATTATT
* *
8195693 ATTTAATTAGTTCTAATTA
1 ATTTAATTACTTCGAATTA
8195712 AATATTTGAA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.33, C:0.07, G:0.05, T:0.55
Consensus pattern (21 bp):
ATTTAATTACTTCGAATTATT
Found at i:8195865 original size:17 final size:17
Alignment explanation
Indices: 8195845--8195877 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
8195835 CAAAATTGGG
8195845 TTGAGAAAATAATTTAA
1 TTGAGAAAATAATTTAA
*
8195862 TTGAGAAATTAATTTA
1 TTGAGAAAATAATTTA
8195878 GTTAATTTAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.48, C:0.00, G:0.12, T:0.39
Consensus pattern (17 bp):
TTGAGAAAATAATTTAA
Found at i:8195884 original size:9 final size:9
Alignment explanation
Indices: 8195868--8195900 Score: 50
Period size: 9 Copynumber: 3.8 Consensus size: 9
8195858 TTAATTGAGA
8195868 AATTAATTT
1 AATTAATTT
*
8195877 AGTTAATTT
1 AATTAATTT
8195886 AATTAA-TT
1 AATTAATTT
8195894 AATTAAT
1 AATTAAT
8195901 ATTTTTGGAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
8 8 0.38
9 13 0.62
ACGTcount: A:0.45, C:0.00, G:0.03, T:0.52
Consensus pattern (9 bp):
AATTAATTT
Found at i:8202823 original size:24 final size:24
Alignment explanation
Indices: 8202796--8202843 Score: 78
Period size: 24 Copynumber: 2.0 Consensus size: 24
8202786 GAGCTTGCCG
8202796 ATATTGGCTCGCTTGAACTTCCCA
1 ATATTGGCTCGCTTGAACTTCCCA
* *
8202820 ATATTGGCTCGTTTGAGCTTCCCA
1 ATATTGGCTCGCTTGAACTTCCCA
8202844 TTATATAGCC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.19, C:0.27, G:0.19, T:0.35
Consensus pattern (24 bp):
ATATTGGCTCGCTTGAACTTCCCA
Found at i:8208373 original size:12 final size:12
Alignment explanation
Indices: 8208356--8208388 Score: 52
Period size: 11 Copynumber: 2.9 Consensus size: 12
8208346 TGGCCCACCC
8208356 ATATTAATTTTT
1 ATATTAATTTTT
8208368 ATATT-ATTTTT
1 ATATTAATTTTT
8208379 ATA-TAATTTT
1 ATATTAATTTT
8208389 AAAATATATA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
10 1 0.05
11 14 0.70
12 5 0.25
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (12 bp):
ATATTAATTTTT
Found at i:8208409 original size:17 final size:19
Alignment explanation
Indices: 8208389--8208429 Score: 52
Period size: 18 Copynumber: 2.3 Consensus size: 19
8208379 ATATAATTTT
*
8208389 AAAATATA-T-AATACATC
1 AAAATATACTAAAAACATC
8208406 AAAA-ATACTAAAAACATC
1 AAAATATACTAAAAACATC
8208424 AAAATA
1 AAAATA
8208430 AATATTTCCC
Statistics
Matches: 20, Mismatches: 1, Indels: 4
0.80 0.04 0.16
Matches are distributed among these distances:
16 3 0.15
17 5 0.25
18 11 0.55
19 1 0.05
ACGTcount: A:0.66, C:0.12, G:0.00, T:0.22
Consensus pattern (19 bp):
AAAATATACTAAAAACATC
Found at i:8208554 original size:30 final size:30
Alignment explanation
Indices: 8208511--8208572 Score: 97
Period size: 30 Copynumber: 2.1 Consensus size: 30
8208501 CTTAACAAGA
8208511 AAATGCCTCTAAAATAATAAAAAAATTAAC
1 AAATGCCTCTAAAATAATAAAAAAATTAAC
* * *
8208541 AAATGTCTTTAAAATAATAACAAAATTAAC
1 AAATGCCTCTAAAATAATAAAAAAATTAAC
8208571 AA
1 AA
8208573 TAAAATAAGT
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.60, C:0.11, G:0.03, T:0.26
Consensus pattern (30 bp):
AAATGCCTCTAAAATAATAAAAAAATTAAC
Found at i:8210492 original size:40 final size:40
Alignment explanation
Indices: 8210366--8210479 Score: 147
Period size: 41 Copynumber: 2.8 Consensus size: 40
8210356 TAGAGAAACT
* *
8210366 GCAATAGGTACAGAAGTAGCGACGTTTATGAGAAAAACGCC
1 GCAAAAGGTA-AGCAGTAGCGACGTTTATGAGAAAAACGCC
* * * *
8210407 GCAAAAGGTCAAACAGTAACGGCGGTTATGAGAAAAACGCC
1 GCAAAAGGT-AAGCAGTAGCGACGTTTATGAGAAAAACGCC
*
8210448 GCAAAAGGTAAGCAGTAGCTACGTTTATGAGA
1 GCAAAAGGTAAGCAGTAGCGACGTTTATGAGA
8210480 TAAATACCGC
Statistics
Matches: 61, Mismatches: 11, Indels: 3
0.81 0.15 0.04
Matches are distributed among these distances:
40 18 0.30
41 42 0.69
42 1 0.02
ACGTcount: A:0.39, C:0.17, G:0.27, T:0.17
Consensus pattern (40 bp):
GCAAAAGGTAAGCAGTAGCGACGTTTATGAGAAAAACGCC
Found at i:8213845 original size:30 final size:26
Alignment explanation
Indices: 8213809--8213863 Score: 110
Period size: 26 Copynumber: 2.1 Consensus size: 26
8213799 AGCTTTTTGG
8213809 TGTGTTTGTTTAGCTTCAATCCACAA
1 TGTGTTTGTTTAGCTTCAATCCACAA
8213835 TGTGTTTGTTTAGCTTCAATCCACAA
1 TGTGTTTGTTTAGCTTCAATCCACAA
8213861 TGT
1 TGT
8213864 CTCAGGTAAG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.22, C:0.18, G:0.16, T:0.44
Consensus pattern (26 bp):
TGTGTTTGTTTAGCTTCAATCCACAA
Found at i:8216178 original size:24 final size:23
Alignment explanation
Indices: 8216151--8216195 Score: 72
Period size: 24 Copynumber: 1.9 Consensus size: 23
8216141 TTTCATAAAT
8216151 ATTATCATAAAAATAATATATTTA
1 ATTATCATAAAAATAA-ATATTTA
*
8216175 ATTATCATAAAGATAAATATT
1 ATTATCATAAAAATAAATATT
8216196 GTTTATCTAT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
23 5 0.25
24 15 0.75
ACGTcount: A:0.53, C:0.04, G:0.02, T:0.40
Consensus pattern (23 bp):
ATTATCATAAAAATAAATATTTA
Found at i:8227527 original size:9 final size:9
Alignment explanation
Indices: 8227420--8227758 Score: 110
Period size: 9 Copynumber: 36.6 Consensus size: 9
8227410 AATTAGAAAA
*
8227420 AAAAAATAT
1 AAAAATTAT
*
8227429 AAAAATCAT
1 AAAAATTAT
*
8227438 AACAA-TA-
1 AAAAATTAT
*
8227445 AAAATATTTAA
1 AAAA-A-TTAT
*
8227456 AAAAATTAGA
1 AAAAATTA-T
*
8227466 AAAAATCAT
1 AAAAATTAT
* **
8227475 ATAAATCGT
1 AAAAATTAT
8227484 AAAAATTAT
1 AAAAATTAT
*
8227493 AAAAA-TAGA
1 AAAAATTA-T
*
8227502 AAAAATCAT
1 AAAAATTAT
8227511 CAAAAATTAT
1 -AAAAATTAT
8227521 AAAAATTAT
1 AAAAATTAT
*
8227530 -TAAA-TATT
1 AAAAATTA-T
8227538 AAAAA-TAT
1 AAAAATTAT
*
8227546 GAAAATTGAT
1 AAAAATT-AT
8227556 AAAAACTT-T
1 AAAAA-TTAT
*
8227565 AAAAAATATAA
1 -AAAAAT-TAT
8227576 AAAAATTAT
1 AAAAATTAT
*
8227585 ACAAATTAT
1 AAAAATTAT
8227594 AAAAA-TAT
1 AAAAATTAT
*
8227602 AATAATT-T
1 AAAAATTAT
*
8227610 ATAAA--AT
1 AAAAATTAT
* *
8227617 GAAATTTAT
1 AAAAATTAT
8227626 -AAAATTAAT
1 AAAAATT-AT
*
8227635 AAAACATATTT
1 AAAA-AT-TAT
8227646 AAAAA-TATT
1 AAAAATTA-T
8227655 AAAAATTTTAT
1 AAAAA--TTAT
**
8227666 AAAAGCGTATT
1 AAAA-ATTA-T
*
8227677 AAAATTCTAT
1 AAAAAT-TAT
*
8227687 AAAAATCAT
1 AAAAATTAT
*
8227696 ACACAATTAT
1 A-AAAATTAT
*
8227706 AAAAAATAT
1 AAAAATTAT
*
8227715 TAAAATTAAT
1 AAAAATT-AT
*
8227725 ATAAACTTAT
1 A-AAAATTAT
*
8227735 AAAAAGTAT
1 AAAAATTAT
*
8227744 AAAAAATCAT
1 -AAAAATTAT
8227754 AAAAA
1 AAAAA
8227759 CTTGAACTCG
Statistics
Matches: 244, Mismatches: 51, Indels: 70
0.67 0.14 0.19
Matches are distributed among these distances:
7 8 0.03
8 30 0.12
9 104 0.43
10 69 0.28
11 30 0.12
12 3 0.01
ACGTcount: A:0.63, C:0.05, G:0.03, T:0.30
Consensus pattern (9 bp):
AAAAATTAT
Found at i:8227535 original size:36 final size:36
Alignment explanation
Indices: 8227421--8227603 Score: 128
Period size: 37 Copynumber: 5.1 Consensus size: 36
8227411 ATTAGAAAAA
* * *
8227421 AAAAATA-TAAAAATCATAACAA-TA-AAAATATTTAA
1 AAAAATAGAAAAAATCATAAAAATTATAAAA-A-TTAT
* **
8227456 AAAAATTAGAAAAAATCATATAAATCGTAAAAATTAT
1 AAAAA-TAGAAAAAATCATAAAAATTATAAAAATTAT
8227493 AAAAATAGAAAAAATCATCAAAAATTATAAAAATTAT
1 AAAAATAGAAAAAATCAT-AAAAATTATAAAAATTAT
* ** *
8227530 -TAAATATTAAAAAT-ATGAAAATTGATAAAAACTT-T
1 AAAAATAGAAAAAATCATAAAAATT-ATAAAAA-TTAT
* * *
8227565 AAAAAATATAAAAAAATTATACAAATTATAAAAA-TAT
1 -AAAAATA-GAAAAAATCATAAAAATTATAAAAATTAT
8227602 AA
1 AA
8227604 TAATTTATAA
Statistics
Matches: 118, Mismatches: 18, Indels: 23
0.74 0.11 0.14
Matches are distributed among these distances:
34 6 0.05
35 15 0.13
36 31 0.26
37 41 0.35
38 14 0.12
39 11 0.09
ACGTcount: A:0.66, C:0.04, G:0.03, T:0.27
Consensus pattern (36 bp):
AAAAATAGAAAAAATCATAAAAATTATAAAAATTAT
Found at i:8227578 original size:28 final size:28
Alignment explanation
Indices: 8227483--8227578 Score: 76
Period size: 28 Copynumber: 3.5 Consensus size: 28
8227473 ATATAAATCG
* * *
8227483 TAAAAATTATAAAAATAGA-AAAAATCAT
1 TAAAAAATATAAAAATTGATAAAAA-CTT
* * *
8227511 CAAAAATTATAAAAATT-AT-TAAA-TAT
1 TAAAAAATATAAAAATTGATAAAAACT-T
*
8227537 T-AAAAATATGAAAATTGATAAAAACTT
1 TAAAAAATATAAAAATTGATAAAAACTT
8227564 TAAAAAATATAAAAA
1 TAAAAAATATAAAAA
8227579 AATTATACAA
Statistics
Matches: 53, Mismatches: 9, Indels: 12
0.72 0.12 0.16
Matches are distributed among these distances:
25 13 0.25
26 3 0.06
27 9 0.17
28 28 0.53
ACGTcount: A:0.66, C:0.03, G:0.03, T:0.28
Consensus pattern (28 bp):
TAAAAAATATAAAAATTGATAAAAACTT
Found at i:8227614 original size:56 final size:54
Alignment explanation
Indices: 8227512--8227615 Score: 131
Period size: 56 Copynumber: 1.9 Consensus size: 54
8227502 AAAAATCATC
* *
8227512 AAAAATTATAAAAATTATTAAATATTAAAAATATGAAAATTGATAAAAACTTTA
1 AAAAATTAAAAAAATTATCAAATATTAAAAATATGAAAATTGATAAAAACTTTA
*
8227566 AAAAATATAAAAAAATTATACAAAT-TATAAAAATAT-AATAATTTATAAAA
1 AAAAAT-TAAAAAAATTAT-CAAATAT-TAAAAATATGAA-AATTGATAAAA
8227616 TGAAATTTAT
Statistics
Matches: 43, Mismatches: 3, Indels: 6
0.83 0.06 0.12
Matches are distributed among these distances:
54 6 0.14
55 14 0.33
56 23 0.53
ACGTcount: A:0.64, C:0.02, G:0.02, T:0.32
Consensus pattern (54 bp):
AAAAATTAAAAAAATTATCAAATATTAAAAATATGAAAATTGATAAAAACTTTA
Found at i:8227718 original size:29 final size:29
Alignment explanation
Indices: 8227686--8227761 Score: 82
Period size: 29 Copynumber: 2.6 Consensus size: 29
8227676 TAAAATTCTA
8227686 TAAAAATCATACACAA-TTATAAAAAATAT
1 TAAAAATCATACA-AACTTATAAAAAATAT
* * * *
8227715 TAAAATTAATATAAACTTATAAAAAGTAT
1 TAAAAATCATACAAACTTATAAAAAATAT
* *
8227744 AAAAAATCATAAAAACTT
1 TAAAAATCATACAAACTT
8227762 GAACTCGACC
Statistics
Matches: 38, Mismatches: 8, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
28 2 0.05
29 36 0.95
ACGTcount: A:0.62, C:0.08, G:0.01, T:0.29
Consensus pattern (29 bp):
TAAAAATCATACAAACTTATAAAAAATAT
Found at i:8227755 original size:19 final size:19
Alignment explanation
Indices: 8227456--8227758 Score: 91
Period size: 19 Copynumber: 16.3 Consensus size: 19
8227446 AAATATTTAA
*
8227456 AAAAATTAGAAAAAATCAT
1 AAAAATTATAAAAAATCAT
* ** *
8227475 ATAAATCGT-AAAAATTAT
1 AAAAATTATAAAAAATCAT
*
8227493 AAAAA-TAGAAAAAATCAT
1 AAAAATTATAAAAAATCAT
*
8227511 CAAAAATTAT-AAAAATTAT
1 -AAAAATTATAAAAAATCAT
* *
8227530 -TAAA-TATTAAAAAT-AT
1 AAAAATTATAAAAAATCAT
* * *
8227546 GAAAATTGATAAAAACT-TT
1 AAAAATT-ATAAAAAATCAT
* *
8227565 AAAAAATATAAAAAAATTAT
1 AAAAATTAT-AAAAAATCAT
*
8227585 ACAAATTAT-AAAAAT-AT
1 AAAAATTATAAAAAATCAT
* *
8227602 AATAATT-T-ATAAA--AT
1 AAAAATTATAAAAAATCAT
* * * *
8227617 GAAATTTAT-AAAATTAAT
1 AAAAATTATAAAAAATCAT
*
8227635 AAAACA-TATTTAAAAAT-ATT
1 AAAA-ATTA-TAAAAAATCA-T
* * *
8227655 AAAAATTTTATAAAAGCGTAT
1 AAAAATTATAAAAAATC--AT
* *
8227676 TAAAATTCTATAAAAATCAT
1 AAAAATTATA-AAAAATCAT
*
8227696 ACACAATTATAAAAAAT-AT
1 A-AAAATTATAAAAAATCAT
* * * *
8227715 TAAAATTAATATAAACTTAT
1 AAAAATT-ATAAAAAATCAT
*
8227735 AAAAAGTATAAAAAATCAT
1 AAAAATTATAAAAAATCAT
8227754 AAAAA
1 AAAAA
8227759 CTTGAACTCG
Statistics
Matches: 206, Mismatches: 54, Indels: 48
0.67 0.18 0.16
Matches are distributed among these distances:
15 6 0.03
16 14 0.07
17 19 0.09
18 41 0.20
19 68 0.33
20 36 0.17
21 16 0.08
22 6 0.03
ACGTcount: A:0.62, C:0.05, G:0.03, T:0.30
Consensus pattern (19 bp):
AAAAATTATAAAAAATCAT
Found at i:8228304 original size:11 final size:11
Alignment explanation
Indices: 8228281--8228327 Score: 64
Period size: 11 Copynumber: 4.5 Consensus size: 11
8228271 TTAATATTTT
8228281 ATTTTTT-AT-
1 ATTTTTTAATG
8228290 ATTTTTTAATG
1 ATTTTTTAATG
8228301 ATTTTTTAATG
1 ATTTTTTAATG
*
8228312 A-TTTTTAATC
1 ATTTTTTAATG
8228322 ATTTTT
1 ATTTTT
8228328 ATGATAAAAA
Statistics
Matches: 34, Mismatches: 1, Indels: 4
0.87 0.03 0.10
Matches are distributed among these distances:
9 7 0.21
10 11 0.32
11 16 0.47
ACGTcount: A:0.26, C:0.02, G:0.04, T:0.68
Consensus pattern (11 bp):
ATTTTTTAATG
Found at i:8228305 original size:10 final size:10
Alignment explanation
Indices: 8228292--8228332 Score: 57
Period size: 10 Copynumber: 4.1 Consensus size: 10
8228282 TTTTTTATAT
8228292 TTTTTAATGA
1 TTTTTAATGA
8228302 TTTTTTAATGA
1 -TTTTTAATGA
*
8228313 TTTTTAATCA
1 TTTTTAATGA
8228323 TTTTT-ATGA
1 TTTTTAATGA
8228332 T
1 T
8228333 AAAAATATTA
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
9 4 0.14
10 14 0.50
11 10 0.36
ACGTcount: A:0.27, C:0.02, G:0.07, T:0.63
Consensus pattern (10 bp):
TTTTTAATGA
Found at i:8228786 original size:2 final size:2
Alignment explanation
Indices: 8228779--8228815 Score: 67
Period size: 2 Copynumber: 19.0 Consensus size: 2
8228769 AACCAAAGCT
8228779 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T- TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
8228816 CATGTTTTTA
Statistics
Matches: 34, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 33 0.97
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:8234445 original size:21 final size:21
Alignment explanation
Indices: 8234419--8234459 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
8234409 TTACTTTTCA
*
8234419 TTTATAGTTTATAACTACCCG
1 TTTATAGTTTACAACTACCCG
8234440 TTTATAGTTTACAACTACCC
1 TTTATAGTTTACAACTACCC
8234460 ATAGGCAAGA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.29, C:0.22, G:0.07, T:0.41
Consensus pattern (21 bp):
TTTATAGTTTACAACTACCCG
Found at i:8239338 original size:21 final size:21
Alignment explanation
Indices: 8239314--8239354 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
8239304 GATGAGATTA
8239314 AAAAACAAAAAAAATGAAATG
1 AAAAACAAAAAAAATGAAATG
* **
8239335 AAAAATAAAAATGATGAAAT
1 AAAAACAAAAAAAATGAAAT
8239355 TGGTAATGGT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.73, C:0.02, G:0.10, T:0.15
Consensus pattern (21 bp):
AAAAACAAAAAAAATGAAATG
Found at i:8240709 original size:15 final size:15
Alignment explanation
Indices: 8240685--8240714 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
8240675 CTCCAACTCT
8240685 TTGGTCTTAAGAATG
1 TTGGTCTTAAGAATG
*
8240700 TTGGTTTTAAGAATG
1 TTGGTCTTAAGAATG
8240715 ATTGATTGCC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.27, C:0.03, G:0.27, T:0.43
Consensus pattern (15 bp):
TTGGTCTTAAGAATG
Found at i:8243433 original size:60 final size:59
Alignment explanation
Indices: 8243320--8243438 Score: 150
Period size: 60 Copynumber: 2.0 Consensus size: 59
8243310 TTAAATTTTA
* *
8243320 AATTTTTAAGAATTAAGACTAAATTGATAGAATGTGTAAAGTTGAGAGCTAAATTTGTTG
1 AATTTTTAAGAATTAAGACTAAATTGATAAAATCTGTAAAGTTGAGA-CTAAATTTGTTG
* * * *
8243380 AATTTTTTAGATTTAAGACTAAGTTGATAAAATCTGTAAATATTTGAGA-TAAATTTGTT
1 AATTTTTAAGAATTAAGACTAAATTGATAAAATCTGT-AA-AGTTGAGACTAAATTTGTT
8243439 CTTAAGAGTG
Statistics
Matches: 51, Mismatches: 6, Indels: 4
0.84 0.10 0.07
Matches are distributed among these distances:
60 42 0.82
61 2 0.04
62 7 0.14
ACGTcount: A:0.39, C:0.03, G:0.17, T:0.40
Consensus pattern (59 bp):
AATTTTTAAGAATTAAGACTAAATTGATAAAATCTGTAAAGTTGAGACTAAATTTGTTG
Found at i:8243619 original size:62 final size:60
Alignment explanation
Indices: 8243490--8243634 Score: 149
Period size: 62 Copynumber: 2.4 Consensus size: 60
8243480 ATTAAAATAG
* *
8243490 AAATTTT-ATATTAATTATC-TTACCTATAAAATTATATCTTTTACAATTTTGAGATAAA
1 AAATTTTAATATTAATTATCTTTACCTATAAAATTATATCTATTAAAATTTTGAGATAAA
* *
8243548 AATATTTTAATATTAATTATCTTTA-CTTTCAATAATTATAAATCTATTAAAATTTT-A-ATTTA
1 AA-ATTTTAATATTAATTATCTTTACCTAT-AA-AATTAT--ATCTATTAAAATTTTGAGA-TAA
8243610 A
60 A
8243611 AAATTTTAAT-TATAATTATCTTTA
1 AAATTTTAATAT-TAATTATCTTTA
8243635 AATTTTAATT
Statistics
Matches: 74, Mismatches: 4, Indels: 14
0.80 0.04 0.15
Matches are distributed among these distances:
58 2 0.03
59 5 0.07
60 15 0.20
61 6 0.08
62 27 0.36
63 6 0.08
64 13 0.18
ACGTcount: A:0.42, C:0.07, G:0.01, T:0.50
Consensus pattern (60 bp):
AAATTTTAATATTAATTATCTTTACCTATAAAATTATATCTATTAAAATTTTGAGATAAA
Found at i:8244976 original size:9 final size:9
Alignment explanation
Indices: 8244962--8244999 Score: 53
Period size: 8 Copynumber: 4.4 Consensus size: 9
8244952 TTTATTTTAT
*
8244962 TTTTTAAAG
1 TTTTTAAAA
8244971 TTTTTAAAA
1 TTTTTAAAA
8244980 -TTTTAAAA
1 TTTTTAAAA
8244988 -TTTTAAAA
1 TTTTTAAAA
8244996 TTTT
1 TTTT
8245000 AAGAATTAAG
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
8 16 0.59
9 11 0.41
ACGTcount: A:0.39, C:0.00, G:0.03, T:0.58
Consensus pattern (9 bp):
TTTTTAAAA
Found at i:8244983 original size:8 final size:8
Alignment explanation
Indices: 8244972--8245006 Score: 61
Period size: 8 Copynumber: 4.2 Consensus size: 8
8244962 TTTTTAAAGT
8244972 TTTTAAAA
1 TTTTAAAA
8244980 TTTTAAAA
1 TTTTAAAA
8244988 TTTTAAAA
1 TTTTAAAA
8244996 TTTTAAGAA
1 TTTTAA-AA
8245005 TT
1 TT
8245007 AAGACTAAAG
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
8 22 0.85
9 4 0.15
ACGTcount: A:0.46, C:0.00, G:0.03, T:0.51
Consensus pattern (8 bp):
TTTTAAAA
Found at i:8246456 original size:6 final size:6
Alignment explanation
Indices: 8246447--8246490 Score: 52
Period size: 6 Copynumber: 7.0 Consensus size: 6
8246437 CTATCTCTAG
* *
8246447 AAAAAT AAAAAT AAAATT AAAATT AAAAATT AAAAATT AAAAAT
1 AAAAAT AAAAAT AAAAAT AAAAAT AAAAA-T AAAAA-T AAAAAT
8246491 TATTCATTTA
Statistics
Matches: 35, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
6 22 0.63
7 13 0.37
ACGTcount: A:0.75, C:0.00, G:0.00, T:0.25
Consensus pattern (6 bp):
AAAAAT
Found at i:8246475 original size:7 final size:7
Alignment explanation
Indices: 8246447--8246492 Score: 64
Period size: 7 Copynumber: 7.1 Consensus size: 7
8246437 CTATCTCTAG
8246447 AAAAA-T
1 AAAAATT
8246453 AAAAA-T
1 AAAAATT
8246459 -AAAATT
1 AAAAATT
8246465 -AAAATT
1 AAAAATT
8246471 AAAAATT
1 AAAAATT
8246478 AAAAATT
1 AAAAATT
8246485 AAAAATT
1 AAAAATT
8246492 A
1 A
8246493 TTCATTTAAA
Statistics
Matches: 38, Mismatches: 0, Indels: 3
0.93 0.00 0.07
Matches are distributed among these distances:
5 4 0.11
6 13 0.34
7 21 0.55
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (7 bp):
AAAAATT
Found at i:8247068 original size:21 final size:20
Alignment explanation
Indices: 8247028--8247073 Score: 67
Period size: 20 Copynumber: 2.2 Consensus size: 20
8247018 CTGAAAATAA
8247028 TTTTTAAAAAATAATTTATT
1 TTTTTAAAAAATAATTTATT
8247048 TTTTTAAAAAA-AATTAATATT
1 TTTTTAAAAAATAATT--TATT
8247069 TTTTT
1 TTTTT
8247074 GTGTTTAGAT
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
19 4 0.17
20 11 0.46
21 9 0.38
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (20 bp):
TTTTTAAAAAATAATTTATT
Found at i:8247287 original size:32 final size:32
Alignment explanation
Indices: 8247249--8247313 Score: 103
Period size: 32 Copynumber: 2.0 Consensus size: 32
8247239 AAAATTATCT
** *
8247249 ATGAAGGAGCTTTTTTCCGGAAAATTACTTAC
1 ATGAAGGAGCTCATTTCCGAAAAATTACTTAC
8247281 ATGAAGGAGCTCATTTCCGAAAAATTACTTAC
1 ATGAAGGAGCTCATTTCCGAAAAATTACTTAC
8247313 A
1 A
8247314 CTTTTCAAAA
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.35, C:0.17, G:0.17, T:0.31
Consensus pattern (32 bp):
ATGAAGGAGCTCATTTCCGAAAAATTACTTAC
Found at i:8247639 original size:2 final size:2
Alignment explanation
Indices: 8247632--8247656 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
8247622 ATATTTTCAT
8247632 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
8247657 TTGAAGAATC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Done.