Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr08 ID=Chr08-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 57128820
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 677448 characters in sequence are not A, C, G, or T
File 30 of 190
Found at i:8627650 original size:30 final size:30
Alignment explanation
Indices: 8627614--8627672 Score: 100
Period size: 30 Copynumber: 2.0 Consensus size: 30
8627604 CGGCCTAGCA
*
8627614 CACGGCCGTGTGTGGAAACTTAGTGAGTTG
1 CACGGCCGTGTGTGGAAACTCAGTGAGTTG
*
8627644 CACGGCCGTGTGTGGGAACTCAGTGAGTT
1 CACGGCCGTGTGTGGAAACTCAGTGAGTT
8627673 ATATGGCCTA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.19, C:0.19, G:0.37, T:0.25
Consensus pattern (30 bp):
CACGGCCGTGTGTGGAAACTCAGTGAGTTG
Found at i:8638093 original size:131 final size:131
Alignment explanation
Indices: 8637923--8638399 Score: 625
Period size: 131 Copynumber: 3.6 Consensus size: 131
8637913 CTTAGTTTGC
* * * ** *
8637923 TGATTTAATATCACAGTTGATATCATTAAAATTCGTTGATTTAAGATCGCAACCTAAGTTCATTT
1 TGATTTAAGATCGCAGCTGATATCATTAAGGTTCGTTGATTTAAGATCACAACCTAAGTTCATTT
* * * *
8637988 GATTTAAGATCATGAACAATCTTATTTGAGTTAGTTTATTTAAGATCGCTAATCCAAACAACTCG
66 GATTTAAGATCATGAACAATCTTATTTGAGTTAGCTAATTTAAGATCGCTAATCTAGACAACTCG
8638053 T
131 T
** *
8638054 TGATTTAAGATCGCAATTGATATCATTAAGGTTCGTTGATTTAAAATCACAACCTAAGTTCATTT
1 TGATTTAAGATCGCAGCTGATATCATTAAGGTTCGTTGATTTAAGATCACAACCTAAGTTCATTT
* * * * *
8638119 CATTTAAGATCATGAACAATCTTATTTGAGTTAACTAATTTAATATCGCTACTCTAGCCAACTCG
66 GATTTAAGATCATGAACAATCTTATTTGAGTTAGCTAATTTAAGATCGCTAATCTAGACAACTCG
8638184 T
131 T
* * * ** * *
8638185 TGATTTAAGACCGCAGCTGATATCATTAAGTTTTGTTGATTTAAGATTGCAATCTAAGTTCATTC
1 TGATTTAAGATCGCAGCTGATATCATTAAGGTTCGTTGATTTAAGATCACAACCTAAGTTCATTT
* * *
8638250 GATTTAAGATCATGAACAATCTTATTTGAGTTAGCTGATTTAAGATCG-TAACTCTAGACAGCTT
66 GATTTAAGATCATGAACAATCTTATTTGAGTTAGCTAATTTAAGATCGCTAA-TCTAGACAACTC
8638314 GT
130 GT
* * * *
8638316 TGATTTAAGATCGTAGCTAATATCATTAAGGTTCGTTGATTTAAGATCACAACATAAGTTTATTC
1 TGATTTAAGATCGCAGCTGATATCATTAAGGTTCGTTGATTTAAGATCACAACCTAAGTTCATT-
*
8638381 T-ATTTAATATCATGAACAA
65 TGATTTAAGATCATGAACAA
8638400 GCTTTTCTAT
Statistics
Matches: 298, Mismatches: 46, Indels: 4
0.86 0.13 0.01
Matches are distributed among these distances:
130 2 0.01
131 296 0.99
ACGTcount: A:0.34, C:0.14, G:0.14, T:0.38
Consensus pattern (131 bp):
TGATTTAAGATCGCAGCTGATATCATTAAGGTTCGTTGATTTAAGATCACAACCTAAGTTCATTT
GATTTAAGATCATGAACAATCTTATTTGAGTTAGCTAATTTAAGATCGCTAATCTAGACAACTCG
T
Found at i:8638341 original size:262 final size:261
Alignment explanation
Indices: 8637859--8638421 Score: 740
Period size: 262 Copynumber: 2.1 Consensus size: 261
8637849 TATCGGTTAC
* * ** *
8637859 TTTAATATCATGAACAACTTTATTTGAGTTAACTGATTTAATATCGCTACTCCACTTAGTTTGCT
1 TTTAATATCATGAACAAC-TTATTTGAGTTAACTAATTTAATATCGCTACTCCACTCAACTCGCT
* * * *
8637924 GATTTAATATCACAGTTGATATCATTAAAATTCGTTGATTTAAGATCGCAACCTAAGTTCATTTG
65 GATTTAAGACCACAGCTGATATCATTAAAATTCGTTGATTTAAGATCGCAACCTAAGTTCATTCG
* *
8637989 ATTTAAGATCATGAACAATCTTATTTGAGTTAGTTTATTTAAGATCGCTAATCCAAACAACTCGT
130 ATTTAAGATCATGAACAATCTTATTTGAGTTAGCTGATTTAAGATCGCTAATCCAAACAACTCGT
* * *
8638054 TGATTTAAGATCGCAATTGATATCATTAAGGTTCGTTGATTTAAAATCACAACCTAAGTTCATT-
195 TGATTTAAGATCGCAACTAATATCATTAAGGTTCGTTGATTTAAAATCACAACATAAGTTCATTC
8638118 TCA
260 T-A
* * *
8638121 TTTAAGATCATGAACAATCTTATTTGAGTTAACTAATTTAATATCGCTACTCTAGC-CAACTCGT
1 TTTAATATCATGAACAA-CTTATTTGAGTTAACTAATTTAATATCGCTACTCCA-CTCAACTCGC
* ** * * *
8638185 TGATTTAAGACCGCAGCTGATATCATTAAGTTTTGTTGATTTAAGATTGCAATCTAAGTTCATTC
64 TGATTTAAGACCACAGCTGATATCATTAAAATTCGTTGATTTAAGATCGCAACCTAAGTTCATTC
* * * *
8638250 GATTTAAGATCATGAACAATCTTATTTGAGTTAGCTGATTTAAGATCG-TAACTCTAGACAGCTT
129 GATTTAAGATCATGAACAATCTTATTTGAGTTAGCTGATTTAAGATCGCTAA-TCCAAACAACTC
* * * *
8638314 GTTGATTTAAGATCGTAGCTAATATCATTAAGGTTCGTTGATTTAAGATCACAACATAAGTTTAT
193 GTTGATTTAAGATCGCAACTAATATCATTAAGGTTCGTTGATTTAAAATCACAACATAAGTTCAT
8638379 TCTA
258 TCTA
8638383 TTTAATATCATGAACAAGCTT-TTCT-ATGTTAACTAATTT
1 TTTAATATCATGAACAA-CTTATT-TGA-GTTAACTAATTT
8638422 CCTAATCTTT
Statistics
Matches: 262, Mismatches: 33, Indels: 12
0.85 0.11 0.04
Matches are distributed among these distances:
261 6 0.02
262 253 0.97
263 3 0.01
ACGTcount: A:0.33, C:0.15, G:0.13, T:0.39
Consensus pattern (261 bp):
TTTAATATCATGAACAACTTATTTGAGTTAACTAATTTAATATCGCTACTCCACTCAACTCGCTG
ATTTAAGACCACAGCTGATATCATTAAAATTCGTTGATTTAAGATCGCAACCTAAGTTCATTCGA
TTTAAGATCATGAACAATCTTATTTGAGTTAGCTGATTTAAGATCGCTAATCCAAACAACTCGTT
GATTTAAGATCGCAACTAATATCATTAAGGTTCGTTGATTTAAAATCACAACATAAGTTCATTCT
A
Found at i:8638878 original size:41 final size:41
Alignment explanation
Indices: 8638815--8638896 Score: 137
Period size: 41 Copynumber: 2.0 Consensus size: 41
8638805 GACTAAAAGC
* *
8638815 ATCAAAGTTTACCCTACGAGCATTGAAAGGACCGCCAACTA
1 ATCAAAGTTTACCCTACAAGCATTGAAAGGACCACCAACTA
*
8638856 ATCAAAGTTTACCCTGCAAGCATTGAAAGGACCACCAACTA
1 ATCAAAGTTTACCCTACAAGCATTGAAAGGACCACCAACTA
8638897 CTTGAGTATG
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
41 38 1.00
ACGTcount: A:0.38, C:0.27, G:0.16, T:0.20
Consensus pattern (41 bp):
ATCAAAGTTTACCCTACAAGCATTGAAAGGACCACCAACTA
Found at i:8649191 original size:3 final size:3
Alignment explanation
Indices: 8649183--8649250 Score: 136
Period size: 3 Copynumber: 22.7 Consensus size: 3
8649173 ATTAACCCAG
8649183 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
8649231 ATA ATA ATA ATA ATA ATA AT
1 ATA ATA ATA ATA ATA ATA AT
8649251 TGTCGAAACC
Statistics
Matches: 65, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 65 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
ATA
Found at i:8651793 original size:17 final size:17
Alignment explanation
Indices: 8651767--8651801 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
8651757 CGTGGATTTG
* *
8651767 GCGCGGAGGCGCTACAC
1 GCGCGCAGGCGCAACAC
8651784 GCGCGCAGGCGCAACAC
1 GCGCGCAGGCGCAACAC
8651801 G
1 G
8651802 TGCAAGGAGG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.20, C:0.37, G:0.40, T:0.03
Consensus pattern (17 bp):
GCGCGCAGGCGCAACAC
Found at i:8653011 original size:13 final size:13
Alignment explanation
Indices: 8652993--8653018 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
8652983 TTTTTTTTAA
8652993 CCTTATAGAATTT
1 CCTTATAGAATTT
8653006 CCTTATAGAATTT
1 CCTTATAGAATTT
8653019 AGAATTGTTC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.08, T:0.46
Consensus pattern (13 bp):
CCTTATAGAATTT
Found at i:8655281 original size:24 final size:23
Alignment explanation
Indices: 8655237--8655281 Score: 54
Period size: 24 Copynumber: 1.9 Consensus size: 23
8655227 TAATGATGAA
* *
8655237 AACGTGAATAAATAATTAAAAGG
1 AACGTGAAAAAATAATAAAAAGG
*
8655260 AACGTGAACAAAATTATAAAAA
1 AACGTGAA-AAAATAATAAAAA
8655282 TACAAGAGTA
Statistics
Matches: 18, Mismatches: 3, Indels: 1
0.82 0.14 0.05
Matches are distributed among these distances:
23 8 0.44
24 10 0.56
ACGTcount: A:0.60, C:0.07, G:0.13, T:0.20
Consensus pattern (23 bp):
AACGTGAAAAAATAATAAAAAGG
Found at i:8655381 original size:36 final size:34
Alignment explanation
Indices: 8655301--8655412 Score: 109
Period size: 36 Copynumber: 3.1 Consensus size: 34
8655291 ATAAATATGT
*
8655301 ATATATGTATGCATATGAAAATTATAAAGTATATAAAAA
1 ATATATGTAT--ATAT--AAATTATAAA-AATATAAAAA
*
8655340 TATATATGTATATATAAATTGTTAAAAAATATAAAAA
1 -ATATATGTATATATAAATT-AT-AAAAATATAAAAA
* *
8655377 ATATATGTGTATATGAATTATAAAAATA-AAAAA
1 ATATATGTATATATAAATTATAAAAATATAAAAA
8655410 ATA
1 ATA
8655413 AATATGTAAA
Statistics
Matches: 65, Mismatches: 5, Indels: 11
0.80 0.06 0.14
Matches are distributed among these distances:
33 8 0.12
34 7 0.11
35 1 0.02
36 22 0.34
37 10 0.15
38 7 0.11
40 10 0.15
ACGTcount: A:0.56, C:0.01, G:0.08, T:0.35
Consensus pattern (34 bp):
ATATATGTATATATAAATTATAAAAATATAAAAA
Found at i:8657390 original size:44 final size:44
Alignment explanation
Indices: 8657291--8657396 Score: 142
Period size: 44 Copynumber: 2.4 Consensus size: 44
8657281 TCTGACCTAT
* ** *
8657291 TGCAACTTCA-GAAGTATAGGATTCTTTGTTTTAATCTGCTCCAC
1 TGCAACTTCAGGGAG-ATAGGATTAGTAGTTTTAATCTGCTCCAC
* *
8657335 TGCCACTTCAGGGAGATAGGATTAGTAGTTTTAGTCTGCTCCAC
1 TGCAACTTCAGGGAGATAGGATTAGTAGTTTTAATCTGCTCCAC
8657379 TGCAACTTCAGGGAGATA
1 TGCAACTTCAGGGAGATA
8657397 AGACTTATTT
Statistics
Matches: 54, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
44 51 0.94
45 3 0.06
ACGTcount: A:0.25, C:0.20, G:0.22, T:0.33
Consensus pattern (44 bp):
TGCAACTTCAGGGAGATAGGATTAGTAGTTTTAATCTGCTCCAC
Found at i:8658368 original size:45 final size:45
Alignment explanation
Indices: 8658296--8658382 Score: 111
Period size: 45 Copynumber: 1.9 Consensus size: 45
8658286 AGCTCGAACT
* * *
8658296 GAATGAATTAATCAAGATAGCAAATTTTGCTAGAATACAAAATGA
1 GAATAAATTAATCAAGATAGCAAATTTTGCCAAAATACAAAATGA
* * **
8658341 GAATAAATTAATCAAGGTGGCGTATTTTGCCAAAATACAAAA
1 GAATAAATTAATCAAGATAGCAAATTTTGCCAAAATACAAAA
8658383 ATGAATAAAA
Statistics
Matches: 35, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
45 35 1.00
ACGTcount: A:0.47, C:0.10, G:0.16, T:0.26
Consensus pattern (45 bp):
GAATAAATTAATCAAGATAGCAAATTTTGCCAAAATACAAAATGA
Found at i:8659154 original size:24 final size:24
Alignment explanation
Indices: 8659127--8659175 Score: 89
Period size: 24 Copynumber: 2.0 Consensus size: 24
8659117 GTTCTGACAG
8659127 ACGTTCGATAGGTGAAAAGGGCAA
1 ACGTTCGATAGGTGAAAAGGGCAA
*
8659151 ACGTTTGATAGGTGAAAAGGGCAA
1 ACGTTCGATAGGTGAAAAGGGCAA
8659175 A
1 A
8659176 TGGTAACTTC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.39, C:0.10, G:0.33, T:0.18
Consensus pattern (24 bp):
ACGTTCGATAGGTGAAAAGGGCAA
Found at i:8665554 original size:30 final size:31
Alignment explanation
Indices: 8665518--8665577 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 31
8665508 AAACCTTTTA
*
8665518 TTTTCCCCCAAAATTTTTACTCCC-TCCCAC
1 TTTTCCCCCAAAACTTTTACTCCCTTCCCAC
* *
8665548 TTTTCCCCTAAAACTTTTATTCCCTTCCCA
1 TTTTCCCCCAAAACTTTTACTCCCTTCCCA
8665578 TCTCACCTCC
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
30 21 0.81
31 5 0.19
ACGTcount: A:0.20, C:0.40, G:0.00, T:0.40
Consensus pattern (31 bp):
TTTTCCCCCAAAACTTTTACTCCCTTCCCAC
Found at i:8676707 original size:56 final size:53
Alignment explanation
Indices: 8676621--8676771 Score: 180
Period size: 56 Copynumber: 2.8 Consensus size: 53
8676611 NATTTGGGTA
* * *
8676621 AAGAGATCCCATGTAAGACCATGTCTGGGACATGGAATTGGCATCCTTAAGATCAT
1 AAGAG-TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCC--AACATCAG
* * *
8676677 AAGAGGTCCCCTGTAAGACCATGTCTGGGACATGGCATGGGCA-CCAACATGAG
1 AAGA-GTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCAACATCAG
* *
8676730 AACA-TCCCATGTAAGACCATGTCTGGGACATGGCTTTGGCAT
1 AAGAGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCAT
8676772 GTTATTATCA
Statistics
Matches: 83, Mismatches: 10, Indels: 8
0.82 0.10 0.08
Matches are distributed among these distances:
51 34 0.41
53 8 0.10
55 2 0.02
56 38 0.46
57 1 0.01
ACGTcount: A:0.29, C:0.23, G:0.26, T:0.23
Consensus pattern (53 bp):
AAGAGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCAACATCAG
Found at i:8679389 original size:16 final size:16
Alignment explanation
Indices: 8679368--8679402 Score: 61
Period size: 16 Copynumber: 2.2 Consensus size: 16
8679358 TTTTATAATG
*
8679368 AAATGCCATGTAGTCA
1 AAATGCCATGTAGCCA
8679384 AAATGCCATGTAGCCA
1 AAATGCCATGTAGCCA
8679400 AAA
1 AAA
8679403 CAAAACACAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.43, C:0.20, G:0.17, T:0.20
Consensus pattern (16 bp):
AAATGCCATGTAGCCA
Found at i:8680537 original size:22 final size:22
Alignment explanation
Indices: 8680504--8680564 Score: 77
Period size: 22 Copynumber: 2.7 Consensus size: 22
8680494 GCCCGGCCCG
* *
8680504 TTTTTAATTAAAATTAAAATTAT
1 TTTTTAA-TAAAATTAAAACTAA
8680527 TTTTTAATAAAATTAAAACTAA
1 TTTTTAATAAAATTAAAACTAA
* *
8680549 TTGTTATTAAAATTAA
1 TTTTTAATAAAATTAA
8680565 TTGTGAGTAA
Statistics
Matches: 34, Mismatches: 4, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
22 27 0.79
23 7 0.21
ACGTcount: A:0.49, C:0.02, G:0.02, T:0.48
Consensus pattern (22 bp):
TTTTTAATAAAATTAAAACTAA
Found at i:8680575 original size:16 final size:16
Alignment explanation
Indices: 8680540--8680579 Score: 53
Period size: 16 Copynumber: 2.5 Consensus size: 16
8680530 TTAATAAAAT
* * *
8680540 TAAAACTAATTGTTAT
1 TAAAATTAATTGTGAG
8680556 TAAAATTAATTGTGAG
1 TAAAATTAATTGTGAG
8680572 TAAAATTA
1 TAAAATTA
8680580 TCAAATTATT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.47, C:0.03, G:0.10, T:0.40
Consensus pattern (16 bp):
TAAAATTAATTGTGAG
Found at i:8680685 original size:9 final size:9
Alignment explanation
Indices: 8680652--8680679 Score: 56
Period size: 9 Copynumber: 3.1 Consensus size: 9
8680642 TTTATCAAAT
8680652 TATTAATTG
1 TATTAATTG
8680661 TATTAATTG
1 TATTAATTG
8680670 TATTAATTG
1 TATTAATTG
8680679 T
1 T
8680680 TGTAATAAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.32, C:0.00, G:0.11, T:0.57
Consensus pattern (9 bp):
TATTAATTG
Found at i:8680687 original size:68 final size:67
Alignment explanation
Indices: 8680570--8680730 Score: 288
Period size: 68 Copynumber: 2.4 Consensus size: 67
8680560 ATTAATTGTG
*
8680570 AGTAAAATTATCAAATTATTAATTG-TTAATTGTATTAATTGTTGTAATAAAATCTAACATTTGA
1 AGTAAATTTATCAAATTATTAATTGTTTAATTGTATTAATTGTTGTAATAAAATCTAACATTTGA
8680634 TT
66 TT
*
8680636 AGTAAATTTATCAAATTATTAATTGTATTAATTGTATTAATTGTTGTAATAAAATCTAACATTTT
1 AGTAAATTTATCAAATTATTAATTGT-TTAATTGTATTAATTGTTGTAATAAAATCTAACATTTG
8680701 ATT
65 ATT
8680704 AGTAAATTTATCAAATTATTAATTGTT
1 AGTAAATTTATCAAATTATTAATTGTT
8680731 GTAACAAAAT
Statistics
Matches: 91, Mismatches: 2, Indels: 3
0.95 0.02 0.03
Matches are distributed among these distances:
66 24 0.26
67 1 0.01
68 66 0.73
ACGTcount: A:0.40, C:0.04, G:0.08, T:0.47
Consensus pattern (67 bp):
AGTAAATTTATCAAATTATTAATTGTTTAATTGTATTAATTGTTGTAATAAAATCTAACATTTGA
TT
Found at i:8681663 original size:24 final size:23
Alignment explanation
Indices: 8681619--8681663 Score: 63
Period size: 24 Copynumber: 1.9 Consensus size: 23
8681609 TAATGATGAA
*
8681619 AACGTGAAAAAATAATTAAAAGG
1 AACGTGAAAAAATAATAAAAAGG
*
8681642 AACGTGAACAAAATTATAAAAA
1 AACGTGAA-AAAATAATAAAAA
8681664 TACAAGAGTA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
23 8 0.42
24 11 0.58
ACGTcount: A:0.62, C:0.07, G:0.13, T:0.18
Consensus pattern (23 bp):
AACGTGAAAAAATAATAAAAAGG
Found at i:8682089 original size:2 final size:2
Alignment explanation
Indices: 8682082--8682111 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
8682072 GATATGCATG
8682082 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
8682112 ATTGAATCTA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:8688957 original size:23 final size:22
Alignment explanation
Indices: 8688926--8688984 Score: 66
Period size: 23 Copynumber: 2.6 Consensus size: 22
8688916 GAATGGTATC
8688926 TACAAATCAAATCT-CTAAGATT
1 TACAAATCAAATCTGCTAAGA-T
**
8688948 TACAAAATCATTTCTGCTAAGAT
1 TAC-AAATCAAATCTGCTAAGAT
*
8688971 TACATATCAAATCT
1 TACAAATCAAATCT
8688985 ACGATTGTAT
Statistics
Matches: 30, Mismatches: 5, Indels: 4
0.77 0.13 0.10
Matches are distributed among these distances:
22 11 0.37
23 13 0.43
24 6 0.20
ACGTcount: A:0.42, C:0.19, G:0.05, T:0.34
Consensus pattern (22 bp):
TACAAATCAAATCTGCTAAGAT
Found at i:8691760 original size:147 final size:147
Alignment explanation
Indices: 8691488--8691762 Score: 372
Period size: 147 Copynumber: 1.9 Consensus size: 147
8691478 ACGGGACCTA
* * * * * * *
8691488 TTTGTTCACACAAGCTGTAGGTTGGGGTTGTTGATATAAGTGTTATTTGATGCTGCTCACAGAAG
1 TTTGCTCACACAAGCTGTAGGTCGGGATTATTCATATAAGTGTTATTCGATGCTGCTCACACAAG
** * * *
8691553 ATGTAGAGAATCCACAACATATGTTAGATCTCGGCCATCGATAACTAAGCCATTGACTAGCACTT
66 ATGTAGAGAATCCACAACATATGCAAGATCTCAGCCATCAATAACTAAGCCACTGACTAGCACTT
8691618 GAACTATATCATTTAGG
131 GAACTATATCATTTAGG
* *
8691635 TTTGCTCACACAAGCTGTAGGTCGGGATTATTCATATAAGTGTTATTCGATGTTGCTCGCACAAG
1 TTTGCTCACACAAGCTGTAGGTCGGGATTATTCATATAAGTGTTATTCGATGCTGCTCACACAAG
* * * *
8691700 CTGTAGAGTATCCGCAACATATGCAAGATCTCAGTCATCAATAACTAAGTCC-CTGACTAGCAC
66 ATGTAGAGAATCCACAACATATGCAAGATCTCAGCCATCAATAACTAAG-CCACTGACTAGCAC
8691763 CCAATTCCTT
Statistics
Matches: 109, Mismatches: 18, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
147 107 0.98
148 2 0.02
ACGTcount: A:0.29, C:0.20, G:0.21, T:0.31
Consensus pattern (147 bp):
TTTGCTCACACAAGCTGTAGGTCGGGATTATTCATATAAGTGTTATTCGATGCTGCTCACACAAG
ATGTAGAGAATCCACAACATATGCAAGATCTCAGCCATCAATAACTAAGCCACTGACTAGCACTT
GAACTATATCATTTAGG
Found at i:8692308 original size:27 final size:27
Alignment explanation
Indices: 8692271--8692327 Score: 114
Period size: 27 Copynumber: 2.1 Consensus size: 27
8692261 AACATTGAGT
8692271 AAAACATTGAATTATCAAATAATAAGA
1 AAAACATTGAATTATCAAATAATAAGA
8692298 AAAACATTGAATTATCAAATAATAAGA
1 AAAACATTGAATTATCAAATAATAAGA
8692325 AAA
1 AAA
8692328 GTCAAAATGA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.61, C:0.07, G:0.07, T:0.25
Consensus pattern (27 bp):
AAAACATTGAATTATCAAATAATAAGA
Found at i:8692684 original size:98 final size:97
Alignment explanation
Indices: 8692503--8692694 Score: 287
Period size: 98 Copynumber: 2.0 Consensus size: 97
8692493 ATATATGAAA
* * *
8692503 ATAAAGACACAACAATGAGTTCAGGCTAGTAGAATACAAGCAATGGAAAAATCAACATTGTACTC
1 ATAAAGACACAACAAGGAGTTCAGGATAGTAGAATACAAGCAATGAAAAAATCAACATTGTACTC
*
8692568 GAAATAGAAAAATTAGAGATAACAATGTTCAC
66 GAAATAGAAAAATCAGAGATAACAATGTTCAC
* * *
8692600 ATAAAGACACAACAGGGAGTTCATGATAGTAGAATACTAAGTAATGAAAAAATCAACATTGTACT
1 ATAAAGACACAACAAGGAGTTCAGGATAGTAGAATAC-AAGCAATGAAAAAATCAACATTGTACT
*
8692665 C-AGAATAGAAAAATCAGAGATAGCAATGTT
65 CGA-AATAGAAAAATCAGAGATAACAATGTT
8692695 GGTAGTGGAA
Statistics
Matches: 85, Mismatches: 8, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
97 34 0.40
98 51 0.60
ACGTcount: A:0.48, C:0.13, G:0.17, T:0.21
Consensus pattern (97 bp):
ATAAAGACACAACAAGGAGTTCAGGATAGTAGAATACAAGCAATGAAAAAATCAACATTGTACTC
GAAATAGAAAAATCAGAGATAACAATGTTCAC
Found at i:8694025 original size:18 final size:19
Alignment explanation
Indices: 8693998--8694033 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
8693988 CCCTTGCACC
*
8693998 CACCATGTTGAAG-ATCAA
1 CACCAAGTTGAAGTATCAA
8694016 CACCAAGTTGAAGTATCA
1 CACCAAGTTGAAGTATCA
8694034 GAATCCATTG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 12 0.75
19 4 0.25
ACGTcount: A:0.39, C:0.22, G:0.17, T:0.22
Consensus pattern (19 bp):
CACCAAGTTGAAGTATCAA
Found at i:8699320 original size:26 final size:25
Alignment explanation
Indices: 8699282--8699331 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 25
8699272 ATGGTCTTTT
*
8699282 AAATAATATTATACTTTTATAAATTC
1 AAATAATATTATAATTTTA-AAATTC
8699308 AAAT-ATATATATAATTTTAAAATT
1 AAATAATAT-TATAATTTTAAAATT
8699332 TTACAATTCA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
25 9 0.41
26 13 0.59
ACGTcount: A:0.50, C:0.04, G:0.00, T:0.46
Consensus pattern (25 bp):
AAATAATATTATAATTTTAAAATTC
Found at i:8699536 original size:15 final size:15
Alignment explanation
Indices: 8699518--8699563 Score: 56
Period size: 15 Copynumber: 3.1 Consensus size: 15
8699508 TTAATAAATA
*
8699518 ATATTTTATATTTTT
1 ATATTTTATAATTTT
*
8699533 ATATTTTAAAATTTT
1 ATATTTTATAATTTT
* *
8699548 AAAATTTATAATTTT
1 ATATTTTATAATTTT
8699563 A
1 A
8699564 AAAAATAAAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
15 26 1.00
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (15 bp):
ATATTTTATAATTTT
Found at i:8702123 original size:37 final size:37
Alignment explanation
Indices: 8702073--8702148 Score: 143
Period size: 37 Copynumber: 2.1 Consensus size: 37
8702063 GTTGGCTGCC
*
8702073 ATTTTTACAAAGGTGCTTGGTAAACCGCAATTTGAAT
1 ATTTTTACAAAGGTACTTGGTAAACCGCAATTTGAAT
8702110 ATTTTTACAAAGGTACTTGGTAAACCGCAATTTGAAT
1 ATTTTTACAAAGGTACTTGGTAAACCGCAATTTGAAT
8702147 AT
1 AT
8702149 CTTCTCTACA
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.34, C:0.13, G:0.17, T:0.36
Consensus pattern (37 bp):
ATTTTTACAAAGGTACTTGGTAAACCGCAATTTGAAT
Found at i:8710237 original size:55 final size:55
Alignment explanation
Indices: 8710177--8710296 Score: 197
Period size: 55 Copynumber: 2.2 Consensus size: 55
8710167 TTTAGGGGGT
8710177 ATACTGACTTCGTCACACTGCCAAGCCACAC-CTCCGTGTGCTAGGCCGTGTGAGC
1 ATACTGACTTCGTCACACTGCCAAGCCACACAC-CCGTGTGCTAGGCCGTGTGAGC
* * *
8710232 ATACTGACATGGTCGCACTGCCAAGCCACACACCCGTGTGCTAGGCCGTGTGAGC
1 ATACTGACTTCGTCACACTGCCAAGCCACACACCCGTGTGCTAGGCCGTGTGAGC
8710287 ATACTGACTT
1 ATACTGACTT
8710297 GGATAACTAA
Statistics
Matches: 60, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
55 59 0.98
56 1 0.02
ACGTcount: A:0.22, C:0.33, G:0.24, T:0.22
Consensus pattern (55 bp):
ATACTGACTTCGTCACACTGCCAAGCCACACACCCGTGTGCTAGGCCGTGTGAGC
Found at i:8712122 original size:40 final size:41
Alignment explanation
Indices: 8711994--8712146 Score: 245
Period size: 41 Copynumber: 3.8 Consensus size: 41
8711984 TACCTTTCAG
*
8711994 ATCTTTAGCGGCGTTTTTAAAAAAGCGCCGCTAATGCTCAT
1 ATCTTTAGCGGCGTTTTTAAAAAAGCGCCGCTAATGCTCAA
*
8712035 ATCTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCTCAA
1 ATCTTTAGCGGCGTTTTTAAAAAAGCGCCGCTAATGCTCAA
*
8712076 ATCTTTAGCGGCGTTTTTAAAAAAGCGCCGCTAATGCTC-G
1 ATCTTTAGCGGCGTTTTTAAAAAAGCGCCGCTAATGCTCAA
** *
8712116 GGCTTTAGCGGCGTTTTTGAAAAAGCGCCGC
1 ATCTTTAGCGGCGTTTTTAAAAAAGCGCCGC
8712147 AAAAACATTT
Statistics
Matches: 105, Mismatches: 7, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
40 28 0.27
41 77 0.73
ACGTcount: A:0.25, C:0.22, G:0.24, T:0.29
Consensus pattern (41 bp):
ATCTTTAGCGGCGTTTTTAAAAAAGCGCCGCTAATGCTCAA
Found at i:8712256 original size:27 final size:26
Alignment explanation
Indices: 8712213--8712270 Score: 75
Period size: 26 Copynumber: 2.2 Consensus size: 26
8712203 AAAATGGATA
*
8712213 AATTTGAAATAATAACAT-GTAAAAAT
1 AATTTGAAATAAAAACATAG-AAAAAT
8712239 AATTTGAAATAAAAAACATAGAAAAAT
1 AATTTGAAAT-AAAAACATAGAAAAAT
8712266 -ATTTG
1 AATTTG
8712271 TTAAAAATGA
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
26 15 0.52
27 13 0.45
28 1 0.03
ACGTcount: A:0.59, C:0.03, G:0.09, T:0.29
Consensus pattern (26 bp):
AATTTGAAATAAAAACATAGAAAAAT
Found at i:8712550 original size:14 final size:15
Alignment explanation
Indices: 8712522--8712552 Score: 55
Period size: 14 Copynumber: 2.1 Consensus size: 15
8712512 AAGGTTTATA
8712522 GATTATGGAATTAGG
1 GATTATGGAATTAGG
8712537 GATTATGG-ATTAGG
1 GATTATGGAATTAGG
8712551 GA
1 GA
8712553 CTCTGATTTA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 8 0.50
15 8 0.50
ACGTcount: A:0.32, C:0.00, G:0.35, T:0.32
Consensus pattern (15 bp):
GATTATGGAATTAGG
Found at i:8712640 original size:7 final size:7
Alignment explanation
Indices: 8712574--8712638 Score: 51
Period size: 7 Copynumber: 9.3 Consensus size: 7
8712564 GGGTTGTGAT
*
8712574 TTAAGGT
1 TTAAGGG
*
8712581 TTATGGG
1 TTAAGGG
*
8712588 TTAAGAG
1 TTAAGGG
*
8712595 TTAGGGG
1 TTAAGGG
8712602 TTAAGGG
1 TTAAGGG
8712609 TT-AGAGG
1 TTAAG-GG
*
8712616 TTAAGAG
1 TTAAGGG
*
8712623 TTAAGGA
1 TTAAGGG
*
8712630 TTTAGGG
1 TTAAGGG
8712637 TT
1 TT
8712639 TATAGATTCG
Statistics
Matches: 44, Mismatches: 12, Indels: 4
0.73 0.20 0.07
Matches are distributed among these distances:
6 2 0.05
7 40 0.91
8 2 0.05
ACGTcount: A:0.28, C:0.00, G:0.37, T:0.35
Consensus pattern (7 bp):
TTAAGGG
Found at i:8713305 original size:18 final size:17
Alignment explanation
Indices: 8713272--8713305 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
8713262 TATTAGATTT
*
8713272 AAAAAAATTAATAAATA
1 AAAAAAATTAACAAATA
8713289 AAAAAAATGTAACAAAT
1 AAAAAAAT-TAACAAAT
8713306 TGATACGGAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 8 0.53
18 7 0.47
ACGTcount: A:0.74, C:0.03, G:0.03, T:0.21
Consensus pattern (17 bp):
AAAAAAATTAACAAATA
Found at i:8713896 original size:59 final size:60
Alignment explanation
Indices: 8713805--8713923 Score: 231
Period size: 60 Copynumber: 2.0 Consensus size: 60
8713795 CATTTTTATA
8713805 AAAAACGCCACAAAAAATAATTTTACTTT-AAAAATAGCCATTTTATATAGCAAAACATT
1 AAAAACGCCACAAAAAATAATTTTACTTTAAAAAATAGCCATTTTATATAGCAAAACATT
8713864 AAAAACGCCACAAAAAATAATTTTACTTTAAAAAATAGCCATTTTATATAGCAAAACATT
1 AAAAACGCCACAAAAAATAATTTTACTTTAAAAAATAGCCATTTTATATAGCAAAACATT
8713924 TAGCGGCGTT
Statistics
Matches: 59, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
59 29 0.49
60 30 0.51
ACGTcount: A:0.51, C:0.15, G:0.05, T:0.29
Consensus pattern (60 bp):
AAAAACGCCACAAAAAATAATTTTACTTTAAAAAATAGCCATTTTATATAGCAAAACATT
Found at i:8713947 original size:76 final size:76
Alignment explanation
Indices: 8713864--8714065 Score: 338
Period size: 76 Copynumber: 2.7 Consensus size: 76
8713854 GCAAAACATT
8713864 AAAAACGCCACAAAAAATAATTTTACTTTAAAAAATAGCCATTTTATATAGCAAAACATTTAGCG
1 AAAAACGCCACAAAAAATAATTTTACTTTAAAAAATAGCCATTTTATATAGCAAAACATTTAGCG
8713929 GCGTTTTTATA
66 GCGTTTTTATA
*
8713940 AAAAACGCCACAAAAAATAATTTTACTTTAAAAAATAACCATTTTATATAGCAAAACATTTAGCG
1 AAAAACGCCACAAAAAATAATTTTACTTTAAAAAATAGCCATTTTATATAGCAAAACATTTAGCG
8714005 GCGTTTTTATA
66 GCGTTTTTATA
*
8714016 AAAAACGCCACAAAAAAATAATTTTA--TAAAAAAATAGGGCCATTTT-TATA
1 AAAAACGCCAC-AAAAAATAATTTTACTTTAAAAAATA--GCCATTTTATATA
8714066 AAATCCCTTC
Statistics
Matches: 120, Mismatches: 3, Indels: 6
0.93 0.02 0.05
Matches are distributed among these distances:
75 9 0.08
76 90 0.75
77 21 0.17
ACGTcount: A:0.48, C:0.14, G:0.08, T:0.30
Consensus pattern (76 bp):
AAAAACGCCACAAAAAATAATTTTACTTTAAAAAATAGCCATTTTATATAGCAAAACATTTAGCG
GCGTTTTTATA
Found at i:8715333 original size:24 final size:24
Alignment explanation
Indices: 8715293--8715350 Score: 91
Period size: 24 Copynumber: 2.5 Consensus size: 24
8715283 AGACTACTGG
*
8715293 TATCTA-TTCTAAGTTGTTTAATT
1 TATCTATTTCTAAGTTGTTTAAGT
*
8715316 TATCTATTTCTAATTTGTTTAAGT
1 TATCTATTTCTAAGTTGTTTAAGT
8715340 TATCTATTTCT
1 TATCTATTTCT
8715351 GCCTTCAACG
Statistics
Matches: 32, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
23 6 0.19
24 26 0.81
ACGTcount: A:0.24, C:0.10, G:0.07, T:0.59
Consensus pattern (24 bp):
TATCTATTTCTAAGTTGTTTAAGT
Found at i:8718604 original size:75 final size:80
Alignment explanation
Indices: 8718502--8718758 Score: 218
Period size: 86 Copynumber: 3.1 Consensus size: 80
8718492 TTGTACTTTT
** *
8718502 AGCGGCGTTTGTGATAAAAGCGCCGCTAAAG-A-T-ATT-G-CGTTCGTGGGAAAAACGCAGCTA
1 AGCGGCGTTTGTGGGAGAAGCGCCGCTAAAGCAGTCATTAGACGTTCGTGGGAAAAACGCAGCTA
8718562 AAGGTCATGGTCTTC
66 AAGGTCATGGTCTTC
* * * * *
8718577 AGCGGCGTTTGTGGGAGAAGTGTCGCTAAAGGTCATGGTCTTTAGCGACGTTTGTGGGAAAAGCG
1 AGCGGCGTTTGTGGGAGAAGCGCCGCTAAA-G-CA--GTCATTA--GACGTTCGTGGGAAAAACG
* * *
8718642 CCGTTAAAGGTCATGGTCTTT
60 CAGCTAAAGGTCATGGTCTTC
* * * *
8718663 AGCGGCGTTTGTGGGAGAAGCGCCGCTAAAGGTCATAGTCTTTAGCGGCGTTTGTGGGAAAAGCG
1 AGCGGCGTTTGTGGGAGAAGCGCCGCTAAA-G-C--AGTCATTA--GACGTTCGTGGGAAAAACG
* *
8718728 CCGCTAAAGGTCATGGTCTTT
60 CAGCTAAAGGTCATGGTCTTC
8718749 AGCGGCGTTT
1 AGCGGCGTTT
8718759 AGTTATAAAA
Statistics
Matches: 154, Mismatches: 15, Indels: 15
0.84 0.08 0.08
Matches are distributed among these distances:
75 25 0.16
76 1 0.01
78 1 0.01
81 1 0.01
82 2 0.01
85 1 0.01
86 122 0.79
88 1 0.01
ACGTcount: A:0.23, C:0.18, G:0.33, T:0.26
Consensus pattern (80 bp):
AGCGGCGTTTGTGGGAGAAGCGCCGCTAAAGCAGTCATTAGACGTTCGTGGGAAAAACGCAGCTA
AAGGTCATGGTCTTC
Found at i:8718605 original size:43 final size:43
Alignment explanation
Indices: 8718538--8718758 Score: 343
Period size: 43 Copynumber: 5.1 Consensus size: 43
8718528 TAAAGATATT
* * * *
8718538 GCGTTCGTGGGAAAAACGCAGCTAAAGGTCATGGTCTTCAGCG
1 GCGTTTGTGGGAAAAGCGCCGCTAAAGGTCATGGTCTTTAGCG
* * *
8718581 GCGTTTGTGGGAGAAGTGTCGCTAAAGGTCATGGTCTTTAGCG
1 GCGTTTGTGGGAAAAGCGCCGCTAAAGGTCATGGTCTTTAGCG
* *
8718624 ACGTTTGTGGGAAAAGCGCCGTTAAAGGTCATGGTCTTTAGCG
1 GCGTTTGTGGGAAAAGCGCCGCTAAAGGTCATGGTCTTTAGCG
* *
8718667 GCGTTTGTGGGAGAAGCGCCGCTAAAGGTCATAGTCTTTAGCG
1 GCGTTTGTGGGAAAAGCGCCGCTAAAGGTCATGGTCTTTAGCG
8718710 GCGTTTGTGGGAAAAGCGCCGCTAAAGGTCATGGTCTTTAGCG
1 GCGTTTGTGGGAAAAGCGCCGCTAAAGGTCATGGTCTTTAGCG
8718753 GCGTTT
1 GCGTTT
8718759 AGTTATAAAA
Statistics
Matches: 160, Mismatches: 18, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
43 160 1.00
ACGTcount: A:0.21, C:0.18, G:0.34, T:0.27
Consensus pattern (43 bp):
GCGTTTGTGGGAAAAGCGCCGCTAAAGGTCATGGTCTTTAGCG
Found at i:8718880 original size:22 final size:22
Alignment explanation
Indices: 8718852--8718894 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
8718842 TAGCGGCGCT
*
8718852 AAAAAGCGCCGCTAAAGGCCTA
1 AAAAAGCGCCGCTAAAAGCCTA
8718874 AAAAAGCGCCGCTAAAAGCCT
1 AAAAAGCGCCGCTAAAAGCCT
8718895 GTTTTGTTGT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.42, C:0.28, G:0.21, T:0.09
Consensus pattern (22 bp):
AAAAAGCGCCGCTAAAAGCCTA
Found at i:8720022 original size:13 final size:13
Alignment explanation
Indices: 8720004--8720028 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
8719994 TGTAATCAGT
8720004 AAAATTTTCATAA
1 AAAATTTTCATAA
8720017 AAAATTTTCATA
1 AAAATTTTCATA
8720029 TGAATTCTCT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.52, C:0.08, G:0.00, T:0.40
Consensus pattern (13 bp):
AAAATTTTCATAA
Found at i:8722702 original size:316 final size:315
Alignment explanation
Indices: 8722130--8722758 Score: 1051
Period size: 316 Copynumber: 2.0 Consensus size: 315
8722120 GTAGAAGAGC
* *
8722130 TGTAGCCATTTGGTTCACGAATTAGCCTGAGGTTTTAAAGGCACATGGTCGTGTGGTGGACATGT
1 TGTAGCCATTTGGTTCACGAACTAGCCTGAGGTTTTAAAGGCACATAGTCGTGTGGTGGACATGT
* *
8722195 GGTCGACCTATGTAGAAGACCATGTGGCCCTAATCCTACACACGATAAGCACTAATTCACTTGGG
66 GGTCCACCTATGTAGAAGACCATGTGGCCCTAATCCTACACACGATAAGCACTAATTCACTTAGG
* * * *
8722260 AACGATCACATGCCTTTCATCAGAGTTCTGATTGACGTTCCTCACGATCAAACCTGATCTAATAC
131 AAAGATCACACGACTTTCATCAGAGTTCTGATTGACGTTCCTCACGATCAAACCTGATCCAATAC
** * *
8722325 ACTTAAATTCGATCCTTCAAAAATATGTACACAATTAGTTATTAATGTCAAGATTGACGAGATTT
196 ACTTAAATTCGATCCTTCAAAAATATGTACACAATTAGCGATTAACGTCAAGAATGACGAGATTT
* *
8722390 GCAAAAGATTTATCAAGGTTTCAAATAGATCGATTGATCGAATTAAAGATTAAGT
261 GCAAAAGATCTATCAAGATTTCAAATAGATCGATTGATCGAATTAAAGATTAAGT
* *
8722445 TGTAGCCATTTGGTTCACGAACTAGCCTGAGGTTTTAAGAGGCACATAGTCGTGTGGTTGCCATG
1 TGTAGCCATTTGGTTCACGAACTAGCCTGAGGTTTTAA-AGGCACATAGTCGTGTGGTGGACATG
* *
8722510 TGGTCCACCTATGTAGAAGACCGTGTGGCCCTAATCCTACACACGATAAGCACTGATTCACTTAG
65 TGGTCCACCTATGTAGAAGACCATGTGGCCCTAATCCTACACACGATAAGCACTAATTCACTTAG
*
8722575 GAAAGATCACACGACTTTCATCAGAGTTCTGATTGACGTTCCTCACGATCAAACCTGATCCGATA
130 GAAAGATCACACGACTTTCATCAGAGTTCTGATTGACGTTCCTCACGATCAAACCTGATCCAATA
* *
8722640 CACTTAAATTCGATCCTTCAGACATATGTACACAATTAGCGATTAACGTCAAGAATGACGAGATT
195 CACTTAAATTCGATCCTTCAAAAATATGTACACAATTAGCGATTAACGTCAAGAATGACGAGATT
*
8722705 TGCAAAAGATCTATCAATATTTCAAATAGATCGATTGATCGAATTAAAGATTAA
260 TGCAAAAGATCTATCAAGATTTCAAATAGATCGATTGATCGAATTAAAGATTAA
8722759 AGGTTGGAGA
Statistics
Matches: 291, Mismatches: 22, Indels: 1
0.93 0.07 0.00
Matches are distributed among these distances:
315 37 0.13
316 254 0.87
ACGTcount: A:0.32, C:0.20, G:0.19, T:0.29
Consensus pattern (315 bp):
TGTAGCCATTTGGTTCACGAACTAGCCTGAGGTTTTAAAGGCACATAGTCGTGTGGTGGACATGT
GGTCCACCTATGTAGAAGACCATGTGGCCCTAATCCTACACACGATAAGCACTAATTCACTTAGG
AAAGATCACACGACTTTCATCAGAGTTCTGATTGACGTTCCTCACGATCAAACCTGATCCAATAC
ACTTAAATTCGATCCTTCAAAAATATGTACACAATTAGCGATTAACGTCAAGAATGACGAGATTT
GCAAAAGATCTATCAAGATTTCAAATAGATCGATTGATCGAATTAAAGATTAAGT
Found at i:8723790 original size:16 final size:15
Alignment explanation
Indices: 8723738--8723790 Score: 52
Period size: 16 Copynumber: 3.3 Consensus size: 15
8723728 TTATAAAAGA
*
8723738 AAAAGAATAAAAAAAT
1 AAAAGAA-AAAAAATT
*
8723754 AAAGAGAAAAATAATGT
1 AAA-AGAAAAAAAAT-T
8723771 AAAAGAAAAAAAATT
1 AAAAGAAAAAAAATT
8723786 CAAAA
1 -AAAA
8723791 TAATTTTTAA
Statistics
Matches: 31, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
15 1 0.03
16 22 0.71
17 8 0.26
ACGTcount: A:0.75, C:0.02, G:0.09, T:0.13
Consensus pattern (15 bp):
AAAAGAAAAAAAATT
Found at i:8724598 original size:5 final size:5
Alignment explanation
Indices: 8724583--8724612 Score: 51
Period size: 5 Copynumber: 6.0 Consensus size: 5
8724573 TTCCATTTGC
*
8724583 TCTTT TTTTT TCTTT TCTTT TCTTT TCTTT
1 TCTTT TCTTT TCTTT TCTTT TCTTT TCTTT
8724613 CTGTATTGAC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.00, C:0.17, G:0.00, T:0.83
Consensus pattern (5 bp):
TCTTT
Found at i:8730291 original size:2 final size:2
Alignment explanation
Indices: 8730284--8730314 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
8730274 ATTATACATG
8730284 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
8730315 CGATCATAAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:8730474 original size:2 final size:2
Alignment explanation
Indices: 8730467--8730504 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
8730457 GCACCCATAA
8730467 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
8730505 CAACCACCTA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:8730735 original size:41 final size:41
Alignment explanation
Indices: 8730633--8730738 Score: 176
Period size: 41 Copynumber: 2.6 Consensus size: 41
8730623 ACTGGCAATT
* * *
8730633 AGCCTGCTAGACGTAAAGTCCGAAATATTTCACCGGCGTCA
1 AGCCTGCTAGACGTAAAGTCTGAAACATTTCACCGGCATCA
*
8730674 AGCCTGCTAGACGTATAGTCTGAAACATTTCACCGGCATCA
1 AGCCTGCTAGACGTAAAGTCTGAAACATTTCACCGGCATCA
8730715 AGCCTGCTAGACGTAAAGTCTGAA
1 AGCCTGCTAGACGTAAAGTCTGAA
8730739 TTATCTCATT
Statistics
Matches: 60, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
41 60 1.00
ACGTcount: A:0.30, C:0.25, G:0.22, T:0.23
Consensus pattern (41 bp):
AGCCTGCTAGACGTAAAGTCTGAAACATTTCACCGGCATCA
Found at i:8742154 original size:28 final size:28
Alignment explanation
Indices: 8742120--8742189 Score: 81
Period size: 29 Copynumber: 2.5 Consensus size: 28
8742110 TAGTATATAT
8742120 AAATTTTAGGGGGAG-GGGAAGGGAGTAA
1 AAATTTTAGGGGGAGTGGG-AGGGAGTAA
* **
8742148 AAGTTTTAGGGAAAAGTGGGAGGGAGTAA
1 AAATTTTAGGG-GGAGTGGGAGGGAGTAA
8742177 AAATTTT-GGGGGA
1 AAATTTTAGGGGGA
8742190 AAATAAAAGG
Statistics
Matches: 34, Mismatches: 6, Indels: 5
0.76 0.13 0.11
Matches are distributed among these distances:
27 1 0.03
28 13 0.38
29 17 0.50
30 3 0.09
ACGTcount: A:0.36, C:0.00, G:0.43, T:0.21
Consensus pattern (28 bp):
AAATTTTAGGGGGAGTGGGAGGGAGTAA
Found at i:8744076 original size:20 final size:20
Alignment explanation
Indices: 8744051--8744090 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
8744041 CAGAAAATGA
*
8744051 TTTCTGGAAAATGTTTTACT
1 TTTCTGGAAAATGATTTACT
*
8744071 TTTCTGTAAAATGATTTACT
1 TTTCTGGAAAATGATTTACT
8744091 GGAAAATATT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.28, C:0.10, G:0.12, T:0.50
Consensus pattern (20 bp):
TTTCTGGAAAATGATTTACT
Found at i:8744106 original size:14 final size:15
Alignment explanation
Indices: 8744030--8744106 Score: 52
Period size: 14 Copynumber: 5.0 Consensus size: 15
8744020 GATTGGCAGT
**
8744030 AAAATG-TTTTCCAG
1 AAAATGATTTTCTGG
8744044 AAAATGA-TTTCTGG
1 AAAATGATTTTCTGG
*
8744058 AAAATGTTTTACTTTTCTGT
1 AAAATG----A-TTTTCTGG
*
8744078 AAAATGATTTACTGG
1 AAAATGATTTTCTGG
8744093 AAAAT-ATTTTCTGG
1 AAAATGATTTTCTGG
8744107 TGTTTGATTG
Statistics
Matches: 50, Mismatches: 6, Indels: 14
0.71 0.09 0.20
Matches are distributed among these distances:
14 25 0.50
15 11 0.22
16 1 0.02
18 1 0.02
20 12 0.24
ACGTcount: A:0.34, C:0.09, G:0.16, T:0.42
Consensus pattern (15 bp):
AAAATGATTTTCTGG
Found at i:8744201 original size:20 final size:20
Alignment explanation
Indices: 8744176--8744252 Score: 86
Period size: 20 Copynumber: 3.9 Consensus size: 20
8744166 TTCAGGAAAG
8744176 TTGTTTTTACATATATTAAA
1 TTGTTTTTACATATATTAAA
*
8744196 TTGTTTTTACATATATATTAA
1 TTGTTTTTACATATAT-TAAA
** *
8744217 TAAATTTTT--ATATTTTAAA
1 T-TGTTTTTACATATATTAAA
8744236 TTGTTTTTACATATATT
1 TTGTTTTTACATATATT
8744253 GCAATGATTT
Statistics
Matches: 45, Mismatches: 8, Indels: 8
0.74 0.13 0.13
Matches are distributed among these distances:
18 5 0.11
19 4 0.09
20 27 0.60
21 4 0.09
22 5 0.11
ACGTcount: A:0.34, C:0.04, G:0.04, T:0.58
Consensus pattern (20 bp):
TTGTTTTTACATATATTAAA
Found at i:8744394 original size:15 final size:15
Alignment explanation
Indices: 8744374--8744404 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
8744364 TAAAGCCAAG
8744374 GATGTGATTGATGAT
1 GATGTGATTGATGAT
8744389 GATGTGATTGATGAT
1 GATGTGATTGATGAT
8744404 G
1 G
8744405 TTAATATTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.26, C:0.00, G:0.35, T:0.39
Consensus pattern (15 bp):
GATGTGATTGATGAT
Found at i:8746704 original size:27 final size:27
Alignment explanation
Indices: 8746666--8746723 Score: 98
Period size: 27 Copynumber: 2.1 Consensus size: 27
8746656 TAAAGCATTG
* *
8746666 AAGGTCAGATGCTATTGTATTGGTGTT
1 AAGGTCAAATGCTACTGTATTGGTGTT
8746693 AAGGTCAAATGCTACTGTATTGGTGTT
1 AAGGTCAAATGCTACTGTATTGGTGTT
8746720 AAGG
1 AAGG
8746724 CTGCAATTTT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.26, C:0.09, G:0.29, T:0.36
Consensus pattern (27 bp):
AAGGTCAAATGCTACTGTATTGGTGTT
Found at i:8746997 original size:13 final size:13
Alignment explanation
Indices: 8746979--8747004 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
8746969 CCAGAAACTG
8746979 ATTTGCAGAAAAC
1 ATTTGCAGAAAAC
8746992 ATTTGCAGAAAAC
1 ATTTGCAGAAAAC
8747005 TCCCATTTGC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.46, C:0.15, G:0.15, T:0.23
Consensus pattern (13 bp):
ATTTGCAGAAAAC
Found at i:8747180 original size:14 final size:14
Alignment explanation
Indices: 8747161--8747190 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
8747151 AACAAAACTA
8747161 GCAGAGAAGATGAG
1 GCAGAGAAGATGAG
*
8747175 GCAGAGATGATGAG
1 GCAGAGAAGATGAG
8747189 GC
1 GC
8747191 TGCAATCGAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.37, C:0.10, G:0.43, T:0.10
Consensus pattern (14 bp):
GCAGAGAAGATGAG
Found at i:8747248 original size:24 final size:24
Alignment explanation
Indices: 8747213--8747258 Score: 83
Period size: 24 Copynumber: 1.9 Consensus size: 24
8747203 GGTGAAGAGA
*
8747213 GTGAAGAGAGGAGCTGTGGAAAGG
1 GTGAAGAAAGGAGCTGTGGAAAGG
8747237 GTGAAGAAAGGAGCTGTGGAAA
1 GTGAAGAAAGGAGCTGTGGAAA
8747259 TGGTTTCAAG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.37, C:0.04, G:0.46, T:0.13
Consensus pattern (24 bp):
GTGAAGAAAGGAGCTGTGGAAAGG
Found at i:8748433 original size:47 final size:47
Alignment explanation
Indices: 8748382--8748535 Score: 186
Period size: 47 Copynumber: 3.2 Consensus size: 47
8748372 ACATAATTAT
8748382 TATTAAATATAATTTAATAAAAATATATAATTTAATAAAATTCTTAA
1 TATTAAATATAATTTAATAAAAATATATAATTTAATAAAATTCTTAA
* * ** *
8748429 TATTAAATATTAATTTACT-AAAATCATA-ATATATAATTTAAAATAATTAT
1 TATTAAATA-TAATTTAATAAAAAT-ATATA-ATTTAA--TAAAATTCTTAA
* *
8748479 TATTAAATATAATTTAATAAAAATATATAATTGAATAAATTTCTTAA
1 TATTAAATATAATTTAATAAAAATATATAATTTAATAAAATTCTTAA
8748526 TATTAAATAT
1 TATTAAATAT
8748536 TCTTAAATGA
Statistics
Matches: 88, Mismatches: 12, Indels: 14
0.77 0.11 0.12
Matches are distributed among these distances:
47 33 0.38
48 16 0.18
49 15 0.17
50 24 0.27
ACGTcount: A:0.53, C:0.03, G:0.01, T:0.44
Consensus pattern (47 bp):
TATTAAATATAATTTAATAAAAATATATAATTTAATAAAATTCTTAA
Found at i:8748443 original size:30 final size:30
Alignment explanation
Indices: 8748402--8748460 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
8748392 AATTTAATAA
*
8748402 AAATATATAATTTAATAAAATTCTTAATATT
1 AAATATATAATTTAATAAAA-TCATAATATT
*
8748433 AAATAT-TAATTTACTAAAATCATAATAT
1 AAATATATAATTTAATAAAATCATAATAT
8748461 ATAATTTAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
29 8 0.31
30 12 0.46
31 6 0.23
ACGTcount: A:0.53, C:0.05, G:0.00, T:0.42
Consensus pattern (30 bp):
AAATATATAATTTAATAAAATCATAATATT
Found at i:8748502 original size:16 final size:16
Alignment explanation
Indices: 8748386--8748505 Score: 56
Period size: 16 Copynumber: 7.4 Consensus size: 16
8748376 AATTATTATT
8748386 AAATATAATTTAATAAA
1 AAATATAATTTAAT-AA
8748403 AATATATAATTTAAT-A
1 AA-ATATAATTTAATAA
* *
8748419 AAAT-T--CTTAATATT
1 AAATATAATTTAATA-A
*
8748433 AAATATTAATTTACT-A
1 AAATA-TAATTTAATAA
**
8748449 AAATCATAATATATAATTT
1 AAAT-ATAAT-T-TAATAA
* *
8748468 AAA-ATAA-TTATTATT
1 AAATATAATTTAATA-A
8748483 AAATATAATTTAATAA
1 AAATATAATTTAATAA
8748499 AAATATA
1 AAATATA
8748506 TAATTGAATA
Statistics
Matches: 78, Mismatches: 11, Indels: 29
0.66 0.09 0.25
Matches are distributed among these distances:
12 5 0.06
14 8 0.10
15 7 0.09
16 23 0.29
17 13 0.17
18 19 0.24
19 3 0.04
ACGTcount: A:0.56, C:0.03, G:0.00, T:0.42
Consensus pattern (16 bp):
AAATATAATTTAATAA
Found at i:8748605 original size:120 final size:120
Alignment explanation
Indices: 8748454--8748832 Score: 665
Period size: 120 Copynumber: 3.2 Consensus size: 120
8748444 TACTAAAATC
* * *
8748454 ATAATATATAATTTAAAATAATTATTATTAAATATAATTTAATAAAAATATATAATTGAATAAAT
1 ATAAAATATAATTTAAAATAATTATTATTAAATATAATTTAATAAAAATATATAATTTAATAAAA
*
8748519 TTCTTAATATTAAATATTCTTAAATGAATTTACTAAAATCATAATATATAATACT
66 TTCTTAATATTAAATATTCTTATATGAATTTACTAAAATCATAATATATAATACT
* *
8748574 ATAAAATATAATTTTAAATAATTATTATTAAATATAATTTAATAAAAGTATATAATTTAATAAAA
1 ATAAAATATAATTTAAAATAATTATTATTAAATATAATTTAATAAAAATATATAATTTAATAAAA
8748639 TTCTTAATATTAAATATTCTTATATGAATTTACTAAAATCATAATATATAATACT
66 TTCTTAATATTAAATATTCTTATATGAATTTACTAAAATCATAATATATAATACT
*
8748694 ATAAAATATAATTAAAAATAATTATTATTAAATATAATTTAATAAAAATATATAATTTAATAAAA
1 ATAAAATATAATTTAAAATAATTATTATTAAATATAATTTAATAAAAATATATAATTTAATAAAA
*
8748759 TTC--AATA-TAATTATTCTTATATGAATTTACTAAAATCATAATATATAATACT
66 TTCTTAATATTAAATATTCTTATATGAATTTACTAAAATCATAATATATAATACT
8748811 ATAAAATATAATTTAAAATAAT
1 ATAAAATATAATTTAAAATAAT
8748833 CTACTTTATT
Statistics
Matches: 248, Mismatches: 11, Indels: 3
0.95 0.04 0.01
Matches are distributed among these distances:
117 65 0.26
118 4 0.02
120 179 0.72
ACGTcount: A:0.53, C:0.04, G:0.01, T:0.42
Consensus pattern (120 bp):
ATAAAATATAATTTAAAATAATTATTATTAAATATAATTTAATAAAAATATATAATTTAATAAAA
TTCTTAATATTAAATATTCTTATATGAATTTACTAAAATCATAATATATAATACT
Found at i:8748760 original size:28 final size:28
Alignment explanation
Indices: 8748681--8748765 Score: 73
Period size: 28 Copynumber: 2.9 Consensus size: 28
8748671 CTAAAATCAT
* *
8748681 AATATATAATACT-ATAAAATATAATTAAA
1 AATATATAAT-TTAATAAAATTTAA-TAAA
* * *
8748710 AATAATTATTATTAAATATAATTTAATAAA
1 AAT-A-TATAATTTAATAAAATTTAATAAA
*
8748740 AATATATAATTTAATAAAATTCAATA
1 AATATATAATTTAATAAAATTTAATA
8748766 TAATTATTCT
Statistics
Matches: 44, Mismatches: 9, Indels: 7
0.73 0.15 0.12
Matches are distributed among these distances:
28 18 0.41
29 4 0.09
30 8 0.18
31 14 0.32
ACGTcount: A:0.59, C:0.02, G:0.00, T:0.39
Consensus pattern (28 bp):
AATATATAATTTAATAAAATTTAATAAA
Found at i:8751360 original size:12 final size:12
Alignment explanation
Indices: 8751345--8751378 Score: 68
Period size: 12 Copynumber: 2.8 Consensus size: 12
8751335 ACTTAACAGA
8751345 AACCAAAACATG
1 AACCAAAACATG
8751357 AACCAAAACATG
1 AACCAAAACATG
8751369 AACCAAAACA
1 AACCAAAACA
8751379 ATAGAGATAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 22 1.00
ACGTcount: A:0.62, C:0.26, G:0.06, T:0.06
Consensus pattern (12 bp):
AACCAAAACATG
Found at i:8751845 original size:20 final size:19
Alignment explanation
Indices: 8751817--8751875 Score: 59
Period size: 20 Copynumber: 3.1 Consensus size: 19
8751807 AAACAGGAAA
*
8751817 AAATTTGGAAGAAGAAACAG
1 AAATCTGGAAGAAGAAA-AG
*
8751837 AAATCTGGAGAAAAGAAAAG
1 AAATCTGGA-AGAAGAAAAG
*
8751857 AAATGT-G-AGAAGAAAAG
1 AAATCTGGAAGAAGAAAAG
8751874 AA
1 AA
8751876 GCGTACCGTA
Statistics
Matches: 34, Mismatches: 4, Indels: 5
0.79 0.09 0.12
Matches are distributed among these distances:
17 11 0.32
19 1 0.03
20 15 0.44
21 7 0.21
ACGTcount: A:0.59, C:0.03, G:0.25, T:0.12
Consensus pattern (19 bp):
AAATCTGGAAGAAGAAAAG
Found at i:8751871 original size:17 final size:18
Alignment explanation
Indices: 8751826--8751875 Score: 57
Period size: 17 Copynumber: 2.7 Consensus size: 18
8751816 AAAATTTGGA
8751826 AGAAGAAACAGAAATCTGG
1 AGAAGAAA-AGAAATCTGG
*
8751845 AGAAAAGAAAAGAAATGT-G
1 AG--AAGAAAAGAAATCTGG
8751864 AGAAGAAAAGAA
1 AGAAGAAAAGAA
8751876 GCGTACCGTA
Statistics
Matches: 28, Mismatches: 1, Indels: 6
0.80 0.03 0.17
Matches are distributed among these distances:
17 10 0.36
19 5 0.18
20 7 0.25
21 6 0.21
ACGTcount: A:0.62, C:0.04, G:0.26, T:0.08
Consensus pattern (18 bp):
AGAAGAAAAGAAATCTGG
Found at i:8751872 original size:22 final size:21
Alignment explanation
Indices: 8751828--8751875 Score: 62
Period size: 22 Copynumber: 2.2 Consensus size: 21
8751818 AATTTGGAAG
8751828 AAGAAACAGAAATCTGGAGAA
1 AAGAAACAGAAATCTGGAGAA
*
8751849 AAGAAA-AGAAATGTGAGAAGAA
1 AAGAAACAGAAATCTG-G-AGAA
8751871 AAGAA
1 AAGAA
8751876 GCGTACCGTA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
20 8 0.33
21 7 0.29
22 9 0.38
ACGTcount: A:0.62, C:0.04, G:0.25, T:0.08
Consensus pattern (21 bp):
AAGAAACAGAAATCTGGAGAA
Found at i:8753680 original size:17 final size:17
Alignment explanation
Indices: 8753658--8753713 Score: 67
Period size: 17 Copynumber: 3.3 Consensus size: 17
8753648 TCGTACATTG
*
8753658 ACACAAATCGCATATAA
1 ACACAACTCGCATATAA
* * *
8753675 ACACAACTCACAAATAG
1 ACACAACTCGCATATAA
*
8753692 ACACAGCTCGCATATAA
1 ACACAACTCGCATATAA
8753709 ACACA
1 ACACA
8753714 TATATGTATA
Statistics
Matches: 31, Mismatches: 8, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
17 31 1.00
ACGTcount: A:0.50, C:0.29, G:0.07, T:0.14
Consensus pattern (17 bp):
ACACAACTCGCATATAA
Found at i:8755626 original size:25 final size:25
Alignment explanation
Indices: 8755597--8755659 Score: 72
Period size: 25 Copynumber: 2.5 Consensus size: 25
8755587 GTAGAATAGT
* *
8755597 AAGCTCCTCCGAGCTGAATAACGGG
1 AAGCTCATCCGAGCTAAATAACGGG
* **
8755622 GAGCTCATGTGAGCTAAATAACGGG
1 AAGCTCATCCGAGCTAAATAACGGG
*
8755647 AAGCTCATGCGAG
1 AAGCTCATCCGAG
8755660 TTGAGCATCG
Statistics
Matches: 31, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
25 31 1.00
ACGTcount: A:0.30, C:0.22, G:0.30, T:0.17
Consensus pattern (25 bp):
AAGCTCATCCGAGCTAAATAACGGG
Found at i:8762381 original size:17 final size:17
Alignment explanation
Indices: 8762359--8762394 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
8762349 TTAGAAAATA
8762359 GGCCCATACGCCCATGT
1 GGCCCATACGCCCATGT
* *
8762376 GGCCCATATGCCCGTGT
1 GGCCCATACGCCCATGT
8762393 GG
1 GG
8762395 ACTACATAGC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.14, C:0.36, G:0.31, T:0.19
Consensus pattern (17 bp):
GGCCCATACGCCCATGT
Found at i:8771984 original size:17 final size:17
Alignment explanation
Indices: 8771952--8771985 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
8771942 GTTTTTTCCC
*
8771952 TTTTTGTTCACTTTTGG
1 TTTTTGTTCACCTTTGG
*
8771969 TTTTTGTTCCCCTTTGG
1 TTTTTGTTCACCTTTGG
8771986 CCGAGTCTTG
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.03, C:0.18, G:0.18, T:0.62
Consensus pattern (17 bp):
TTTTTGTTCACCTTTGG
Found at i:8777385 original size:43 final size:43
Alignment explanation
Indices: 8777234--8777386 Score: 134
Period size: 43 Copynumber: 3.6 Consensus size: 43
8777224 TTATCGTGTG
* * * *
8777234 AGACCACGTCTGGGACGTTGGCGTCGAT-TTGAGATTTACGTGTA
1 AGACCACGTCTAGGACGTTGGCATCGATATT-TGA-TTACATGTA
* * * ** *
8777278 AGACCATGTCTAGGACGTCGGCATTG-TACATGATTTCATGTA
1 AGACCACGTCTAGGACGTTGGCATCGATATTTGATTACATGTA
*
8777320 AGACC-CTGTCTGGGACAG-TGGCATCGATATTTGATTACATGTA
1 AGACCAC-GTCTAGGAC-GTTGGCATCGATATTTGATTACATGTA
*
8777363 AGGCCACGTCTAGGACGTTGGCAT
1 AGACCACGTCTAGGACGTTGGCAT
8777387 TGTAAGAGCT
Statistics
Matches: 84, Mismatches: 19, Indels: 13
0.72 0.16 0.11
Matches are distributed among these distances:
42 27 0.32
43 35 0.42
44 22 0.26
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.29
Consensus pattern (43 bp):
AGACCACGTCTAGGACGTTGGCATCGATATTTGATTACATGTA
Found at i:8777931 original size:93 final size:90
Alignment explanation
Indices: 8777741--8777931 Score: 233
Period size: 93 Copynumber: 2.1 Consensus size: 90
8777731 GCTAGTTTGG
*
8777741 TTTGAAAGATGATTAGATAAATGTTATTGATAAGGTTAAATTATTAAATATGTTACGTATATGTG
1 TTTGAAAGATGATTAGATAAATGTTATTGATAAGGTTAAATTATTAAATATGTTACGTATAAGTG
* * * * *
8777806 AAAGAGTTAAATAGGCATGCTAGTTTGG
66 --AGAATT-AATAAGCATGCTAATATGC
8777834 TTTGAAAGATGATTAGATAAATGTTATTGATAAGGTTAAATTATTAAATATGTTACGTATAACAG
1 TTTGAAAGATGATTAGATAAATGTTATTGATAAGGTTAAATTATTAAATATGTTACGTAT-A-AG
*
8777899 TG-GAATT-ATGAAGCATGTGTAATATGAC
64 TGAGAATTAAT-AAGCATG-CTAATATG-C
8777927 TTTGA
1 TTTGA
8777932 TGTATGGTAG
Statistics
Matches: 86, Mismatches: 7, Indels: 10
0.83 0.07 0.10
Matches are distributed among these distances:
90 2 0.02
91 6 0.07
92 9 0.10
93 65 0.76
94 1 0.01
95 3 0.03
ACGTcount: A:0.38, C:0.04, G:0.20, T:0.38
Consensus pattern (90 bp):
TTTGAAAGATGATTAGATAAATGTTATTGATAAGGTTAAATTATTAAATATGTTACGTATAAGTG
AGAATTAATAAGCATGCTAATATGC
Found at i:8782886 original size:26 final size:26
Alignment explanation
Indices: 8782850--8782911 Score: 88
Period size: 26 Copynumber: 2.4 Consensus size: 26
8782840 CCTGTAAGTG
*
8782850 TTCTAAAACTGATACATGCTATGATA
1 TTCTGAAACTGATACATGCTATGATA
* * *
8782876 TTCTGGAACTGATATATGTTATGATA
1 TTCTGAAACTGATACATGCTATGATA
8782902 TTCTGAAACT
1 TTCTGAAACT
8782912 ACTATAGGTA
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
26 31 1.00
ACGTcount: A:0.34, C:0.13, G:0.15, T:0.39
Consensus pattern (26 bp):
TTCTGAAACTGATACATGCTATGATA
Found at i:8786901 original size:15 final size:14
Alignment explanation
Indices: 8786881--8786926 Score: 65
Period size: 15 Copynumber: 3.1 Consensus size: 14
8786871 AGAGCTGATG
8786881 GGCCAGTCAAAACT
1 GGCCAGTCAAAACT
*
8786895 AGGCCAGTCAAAGCT
1 -GGCCAGTCAAAACT
8786910 GGACCAGTCAAAACT
1 GG-CCAGTCAAAACT
8786925 GG
1 GG
8786927 GGCATGCTTG
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
14 2 0.07
15 26 0.93
ACGTcount: A:0.35, C:0.26, G:0.26, T:0.13
Consensus pattern (14 bp):
GGCCAGTCAAAACT
Found at i:8790073 original size:19 final size:19
Alignment explanation
Indices: 8790049--8790087 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 19
8790039 TCCCTTAGTA
8790049 AAGGTTCTGTGCCGTAATC
1 AAGGTTCTGTGCCGTAATC
*
8790068 AAGGTTCTGTGGCGTAATC
1 AAGGTTCTGTGCCGTAATC
8790087 A
1 A
8790088 TAGCAAGGAG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.23, C:0.18, G:0.28, T:0.31
Consensus pattern (19 bp):
AAGGTTCTGTGCCGTAATC
Found at i:8790704 original size:17 final size:17
Alignment explanation
Indices: 8790672--8790705 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
8790662 GTTTTCTCCC
*
8790672 TTTTTGTTCACTTTTGG
1 TTTTTGTTCACCTTTGG
*
8790689 TTTTTGTTCCCCTTTGG
1 TTTTTGTTCACCTTTGG
8790706 CCGAATCTTG
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.03, C:0.18, G:0.18, T:0.62
Consensus pattern (17 bp):
TTTTTGTTCACCTTTGG
Found at i:8792729 original size:45 final size:45
Alignment explanation
Indices: 8792678--8792768 Score: 182
Period size: 45 Copynumber: 2.0 Consensus size: 45
8792668 GTTTTTATTT
8792678 ATTTGTTTATTTTACTTTATGGATTTATACCTGCTGGTCGTAGGA
1 ATTTGTTTATTTTACTTTATGGATTTATACCTGCTGGTCGTAGGA
8792723 ATTTGTTTATTTTACTTTATGGATTTATACCTGCTGGTCGTAGGA
1 ATTTGTTTATTTTACTTTATGGATTTATACCTGCTGGTCGTAGGA
8792768 A
1 A
8792769 ATTCGATTTT
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
45 46 1.00
ACGTcount: A:0.21, C:0.11, G:0.20, T:0.48
Consensus pattern (45 bp):
ATTTGTTTATTTTACTTTATGGATTTATACCTGCTGGTCGTAGGA
Found at i:8794453 original size:18 final size:19
Alignment explanation
Indices: 8794430--8794468 Score: 53
Period size: 20 Copynumber: 2.1 Consensus size: 19
8794420 AACAAACTTT
*
8794430 ACATAAT-TCACATTCTTC
1 ACATAATATCACATTATTC
8794448 ACATAATAATCACATTATTC
1 ACATAAT-ATCACATTATTC
8794468 A
1 A
8794469 TTTGCCAAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 7 0.39
20 11 0.61
ACGTcount: A:0.41, C:0.23, G:0.00, T:0.36
Consensus pattern (19 bp):
ACATAATATCACATTATTC
Found at i:8794638 original size:43 final size:43
Alignment explanation
Indices: 8794573--8794665 Score: 179
Period size: 43 Copynumber: 2.2 Consensus size: 43
8794563 ATAGGTCAAT
8794573 TTCA-ATTTCAGTACTTTAAACATAATCAATGATCATTTATAA
1 TTCACATTTCAGTACTTTAAACATAATCAATGATCATTTATAA
8794615 TTCACATTTCAGTACTTTAAACATAATCAATGATCATTTATAA
1 TTCACATTTCAGTACTTTAAACATAATCAATGATCATTTATAA
8794658 TTCACATT
1 TTCACATT
8794666 CATTTTATTT
Statistics
Matches: 50, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
42 4 0.08
43 46 0.92
ACGTcount: A:0.39, C:0.16, G:0.04, T:0.41
Consensus pattern (43 bp):
TTCACATTTCAGTACTTTAAACATAATCAATGATCATTTATAA
Found at i:8796676 original size:45 final size:41
Alignment explanation
Indices: 8796617--8796726 Score: 107
Period size: 45 Copynumber: 2.6 Consensus size: 41
8796607 TTTGGTTCGC
* *
8796617 TGTATTGGATTAGAGGTGTAATAGCAAATCAACTGTTTGGTT
1 TGTAATGGAATAGAGGTGTAATAGCAAATCAACTGTTTGG-T
* * ***
8796659 GAATGTAATGGAATAGAGGCGTAATAG-TAATCTTGTGTTTGGT
1 ---TGTAATGGAATAGAGGTGTAATAGCAAATCAACTGTTTGGT
8796702 TG-AATGGAATAGAGGTGTAATAGCA
1 TGTAATGGAATAGAGGTGTAATAGCA
8796727 TGGAGGCGAG
Statistics
Matches: 55, Mismatches: 9, Indels: 7
0.77 0.13 0.10
Matches are distributed among these distances:
39 20 0.36
40 2 0.04
43 1 0.02
44 11 0.20
45 21 0.38
ACGTcount: A:0.32, C:0.05, G:0.29, T:0.34
Consensus pattern (41 bp):
TGTAATGGAATAGAGGTGTAATAGCAAATCAACTGTTTGGT
Found at i:8797279 original size:15 final size:14
Alignment explanation
Indices: 8797251--8797297 Score: 60
Period size: 15 Copynumber: 3.4 Consensus size: 14
8797241 TTAAACTAAA
8797251 AAATT-TAAAAATT
1 AAATTATAAAAATT
*
8797264 AAATTATATTAAATT
1 AAATTATA-AAAATT
*
8797279 AAAATATAAAAATT
1 AAATTATAAAAATT
8797293 AAATT
1 AAATT
8797298 TTATAGTAAA
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
13 5 0.18
14 11 0.39
15 12 0.43
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (14 bp):
AAATTATAAAAATT
Found at i:8801157 original size:103 final size:103
Alignment explanation
Indices: 8801030--8801237 Score: 416
Period size: 103 Copynumber: 2.0 Consensus size: 103
8801020 TGGATTCGTC
8801030 GCGGTAAGTTTTTGAATCGCTGTTGGTTTAGTTTCTCGAGTTTTATGTTGGGGATATTTGGTTGA
1 GCGGTAAGTTTTTGAATCGCTGTTGGTTTAGTTTCTCGAGTTTTATGTTGGGGATATTTGGTTGA
8801095 TTGACGAATCAAGTGATTAATTAAGGGATATATTGCTT
66 TTGACGAATCAAGTGATTAATTAAGGGATATATTGCTT
8801133 GCGGTAAGTTTTTGAATCGCTGTTGGTTTAGTTTCTCGAGTTTTATGTTGGGGATATTTGGTTGA
1 GCGGTAAGTTTTTGAATCGCTGTTGGTTTAGTTTCTCGAGTTTTATGTTGGGGATATTTGGTTGA
8801198 TTGACGAATCAAGTGATTAATTAAGGGATATATTGCTT
66 TTGACGAATCAAGTGATTAATTAAGGGATATATTGCTT
8801236 GC
1 GC
8801238 TGTCTAGAAA
Statistics
Matches: 105, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
103 105 1.00
ACGTcount: A:0.22, C:0.08, G:0.27, T:0.42
Consensus pattern (103 bp):
GCGGTAAGTTTTTGAATCGCTGTTGGTTTAGTTTCTCGAGTTTTATGTTGGGGATATTTGGTTGA
TTGACGAATCAAGTGATTAATTAAGGGATATATTGCTT
Found at i:8805091 original size:26 final size:26
Alignment explanation
Indices: 8805057--8805119 Score: 81
Period size: 26 Copynumber: 2.4 Consensus size: 26
8805047 CTTGTAAGTG
*
8805057 TTCTAAAACTAATACATGCTATGACA
1 TTCTGAAACTAATACATGCTATGACA
* * * *
8805083 TTCTGAAACTGATATATGTTATGATA
1 TTCTGAAACTAATACATGCTATGACA
8805109 TTCTGAAACTA
1 TTCTGAAACTA
8805120 CTATAGGTAG
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 31 1.00
ACGTcount: A:0.38, C:0.14, G:0.11, T:0.37
Consensus pattern (26 bp):
TTCTGAAACTAATACATGCTATGACA
Found at i:8814404 original size:15 final size:15
Alignment explanation
Indices: 8814384--8814415 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
8814374 CATTTCACTA
*
8814384 TTATGTCTTTTGTAT
1 TTATGTCTTTTATAT
8814399 TTATGTCTTTTATAT
1 TTATGTCTTTTATAT
8814414 TT
1 TT
8814416 TGCAGGCATA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.16, C:0.06, G:0.09, T:0.69
Consensus pattern (15 bp):
TTATGTCTTTTATAT
Found at i:8816684 original size:13 final size:13
Alignment explanation
Indices: 8816666--8816692 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
8816656 ATTTCTCTTC
8816666 TTTTTGAATGATT
1 TTTTTGAATGATT
8816679 TTTTTGAATGATT
1 TTTTTGAATGATT
8816692 T
1 T
8816693 GATTACATAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.22, C:0.00, G:0.15, T:0.63
Consensus pattern (13 bp):
TTTTTGAATGATT
Found at i:8816838 original size:24 final size:24
Alignment explanation
Indices: 8816798--8816851 Score: 58
Period size: 24 Copynumber: 2.3 Consensus size: 24
8816788 ACCTATCTCA
* *
8816798 TTAT-ATATCTATTTTAT-TATTG
1 TTATAATATCTATATTATGTAATG
*
8816820 TTTATAATATTTATATTATGTAATG
1 -TTATAATATCTATATTATGTAATG
8816845 TTATAAT
1 TTATAAT
8816852 TGTGATATAT
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
23 4 0.15
24 18 0.69
25 4 0.15
ACGTcount: A:0.33, C:0.02, G:0.06, T:0.59
Consensus pattern (24 bp):
TTATAATATCTATATTATGTAATG
Found at i:8833605 original size:5 final size:5
Alignment explanation
Indices: 8833595--8833621 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
8833585 AGATATAGTT
8833595 GATTC GATTC GATTC GATTC GATTC GA
1 GATTC GATTC GATTC GATTC GATTC GA
8833622 ATTCTATCTC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.22, C:0.19, G:0.22, T:0.37
Consensus pattern (5 bp):
GATTC
Found at i:8836675 original size:59 final size:59
Alignment explanation
Indices: 8836610--8836727 Score: 182
Period size: 59 Copynumber: 2.0 Consensus size: 59
8836600 GTTTTGCAGA
** * *
8836610 TTAATGCTTAGTATGTTGTAATGGAATTTACAACACTTAGCTTGCTCATAGGTAAGCAT
1 TTAATGCTTAGTATGTTCAAATGAAATTTACAACACTTACCTTGCTCATAGGTAAGCAT
* *
8836669 TTAATGCTTTGTATGTTCAAATGAAATTTACAACACTTACCTTGCTCATAGGTGAGCAT
1 TTAATGCTTAGTATGTTCAAATGAAATTTACAACACTTACCTTGCTCATAGGTAAGCAT
8836728 GTTACTACCA
Statistics
Matches: 53, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
59 53 1.00
ACGTcount: A:0.31, C:0.15, G:0.17, T:0.37
Consensus pattern (59 bp):
TTAATGCTTAGTATGTTCAAATGAAATTTACAACACTTACCTTGCTCATAGGTAAGCAT
Found at i:8847818 original size:16 final size:17
Alignment explanation
Indices: 8847797--8847828 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
8847787 CTATGTATTT
8847797 TGAAAT-TAAAAATATA
1 TGAAATGTAAAAATATA
8847813 TGAAATGTAAAAATAT
1 TGAAATGTAAAAATAT
8847829 GATTTTTTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 6 0.40
17 9 0.60
ACGTcount: A:0.59, C:0.00, G:0.09, T:0.31
Consensus pattern (17 bp):
TGAAATGTAAAAATATA
Found at i:8848437 original size:20 final size:21
Alignment explanation
Indices: 8848412--8848462 Score: 59
Period size: 21 Copynumber: 2.4 Consensus size: 21
8848402 AATTGGAAGG
*
8848412 AGTAAAAGT-TTTGGGGGAAA
1 AGTAAAAATGTTTGGGGGAAA
*
8848432 AGTAAAAATGTTTGGGGTAAA
1 AGTAAAAATGTTTGGGGGAAA
*
8848453 AATATAAAAT
1 AGTA-AAAAT
8848463 ATTATAGTTT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
20 8 0.31
21 13 0.50
22 5 0.19
ACGTcount: A:0.47, C:0.00, G:0.25, T:0.27
Consensus pattern (21 bp):
AGTAAAAATGTTTGGGGGAAA
Found at i:8848454 original size:22 final size:20
Alignment explanation
Indices: 8848412--8848454 Score: 50
Period size: 20 Copynumber: 2.0 Consensus size: 20
8848402 AATTGGAAGG
* *
8848412 AGTAAAAGTTTTGGGGGAAA
1 AGTAAAAATTTTGGGGAAAA
8848432 AGTAAAAATGTTTGGGGTAAAA
1 AGTAAAAAT-TTTGGGG-AAAA
8848454 A
1 A
8848455 TATAAAATAT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
20 8 0.42
21 7 0.37
22 4 0.21
ACGTcount: A:0.44, C:0.00, G:0.30, T:0.26
Consensus pattern (20 bp):
AGTAAAAATTTTGGGGAAAA
Found at i:8848755 original size:20 final size:21
Alignment explanation
Indices: 8848730--8848768 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
8848720 TAAACCTATT
*
8848730 CAAAATATATCAA-AACATGC
1 CAAAATATACCAATAACATGC
8848750 CAAAATATACCAATAACAT
1 CAAAATATACCAATAACAT
8848769 TCAACCTAAG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 12 0.71
21 5 0.29
ACGTcount: A:0.56, C:0.21, G:0.03, T:0.21
Consensus pattern (21 bp):
CAAAATATACCAATAACATGC
Found at i:8849642 original size:18 final size:19
Alignment explanation
Indices: 8849611--8849648 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 19
8849601 CCTCTATTTG
8849611 TAACTAAGTAAATA-GATA
1 TAACTAAGTAAATATGATA
* *
8849629 TAACTAATTTAATATGATA
1 TAACTAAGTAAATATGATA
8849648 T
1 T
8849649 CTTGTCAATA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
18 12 0.71
19 5 0.29
ACGTcount: A:0.50, C:0.05, G:0.08, T:0.37
Consensus pattern (19 bp):
TAACTAAGTAAATATGATA
Found at i:8850153 original size:21 final size:21
Alignment explanation
Indices: 8850124--8850176 Score: 63
Period size: 20 Copynumber: 2.6 Consensus size: 21
8850114 TAACAAAGGA
8850124 ACCGAAGTGCAAAATAGAGAT
1 ACCGAAGTGCAAAATAGAGAT
* ** *
8850145 ACTGAAGTGC-TTATAGAGGT
1 ACCGAAGTGCAAAATAGAGAT
8850165 ACCGAAGTGCAA
1 ACCGAAGTGCAA
8850177 TCCCGTACAA
Statistics
Matches: 25, Mismatches: 6, Indels: 2
0.76 0.18 0.06
Matches are distributed among these distances:
20 16 0.64
21 9 0.36
ACGTcount: A:0.40, C:0.15, G:0.26, T:0.19
Consensus pattern (21 bp):
ACCGAAGTGCAAAATAGAGAT
Found at i:8851208 original size:23 final size:22
Alignment explanation
Indices: 8851163--8851208 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 22
8851153 AGGTGATGAC
*
8851163 TTTATTTGTTTTATCTTATATT
1 TTTATTTGTTTTATATTATATT
8851185 TTTATCTTGTTTTATTATTA-ATT
1 TTTAT-TTGTTTTA-TATTATATT
8851208 T
1 T
8851209 AATATTATAG
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
22 5 0.24
23 12 0.57
24 4 0.19
ACGTcount: A:0.20, C:0.04, G:0.04, T:0.72
Consensus pattern (22 bp):
TTTATTTGTTTTATATTATATT
Found at i:8852386 original size:17 final size:17
Alignment explanation
Indices: 8852360--8852401 Score: 57
Period size: 17 Copynumber: 2.5 Consensus size: 17
8852350 TGTTTTGTTA
*
8852360 GTTTTTTTATTTATTTT
1 GTTTTATTATTTATTTT
*
8852377 GTTTTATTATTTGTTTT
1 GTTTTATTATTTATTTT
*
8852394 CTTTTATT
1 GTTTTATT
8852402 CACGATTTTT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 22 1.00
ACGTcount: A:0.12, C:0.02, G:0.07, T:0.79
Consensus pattern (17 bp):
GTTTTATTATTTATTTT
Found at i:8852388 original size:13 final size:12
Alignment explanation
Indices: 8852347--8852393 Score: 51
Period size: 12 Copynumber: 3.8 Consensus size: 12
8852337 CACCCGTTCC
*
8852347 ATTTGTTTTGTT
1 ATTTGTTTTATT
8852359 AGTTT-TTTTATTT
1 A-TTTGTTTTA-TT
8852372 ATTTTGTTTTATT
1 A-TTTGTTTTATT
8852385 ATTTGTTTT
1 ATTTGTTTT
8852394 CTTTTATTCA
Statistics
Matches: 30, Mismatches: 2, Indels: 6
0.79 0.05 0.16
Matches are distributed among these distances:
12 13 0.43
13 12 0.40
14 5 0.17
ACGTcount: A:0.13, C:0.00, G:0.11, T:0.77
Consensus pattern (12 bp):
ATTTGTTTTATT
Found at i:8856422 original size:25 final size:26
Alignment explanation
Indices: 8856371--8856438 Score: 95
Period size: 26 Copynumber: 2.7 Consensus size: 26
8856361 TTATATGACA
8856371 CTTTGTGAGCTTCCCGATTAAAGGCT
1 CTTTGTGAGCTTCCCGATTAAAGGCT
*
8856397 CTTTGTGAGCTTCCCG-TTAATGGCT
1 CTTTGTGAGCTTCCCGATTAAAGGCT
* *
8856422 CTCT-AGAGCTTCCCGAT
1 CTTTGTGAGCTTCCCGAT
8856439 ATGACTCGCC
Statistics
Matches: 38, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
24 10 0.26
25 12 0.32
26 16 0.42
ACGTcount: A:0.16, C:0.26, G:0.22, T:0.35
Consensus pattern (26 bp):
CTTTGTGAGCTTCCCGATTAAAGGCT
Found at i:8856435 original size:24 final size:26
Alignment explanation
Indices: 8856377--8856438 Score: 83
Period size: 25 Copynumber: 2.5 Consensus size: 26
8856367 GACACTTTGT
* *
8856377 GAGCTTCCCGATTAAAGGCTCTTTGT
1 GAGCTTCCCGATTAAAGGCTCTCTGA
*
8856403 GAGCTTCCCG-TTAATGGCTCTCT-A
1 GAGCTTCCCGATTAAAGGCTCTCTGA
8856427 GAGCTTCCCGAT
1 GAGCTTCCCGAT
8856439 ATGACTCGCC
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
24 10 0.31
25 12 0.38
26 10 0.31
ACGTcount: A:0.18, C:0.27, G:0.23, T:0.32
Consensus pattern (26 bp):
GAGCTTCCCGATTAAAGGCTCTCTGA
Found at i:8867201 original size:20 final size:20
Alignment explanation
Indices: 8867176--8867240 Score: 60
Period size: 20 Copynumber: 3.1 Consensus size: 20
8867166 GTTGTATTGG
8867176 TACTTCTCTAGAGGTACCTA
1 TACTTCTCTAGAGGTACCTA
* * * *
8867196 TACTTCACCCACAAGGTACCTG
1 TACTTC-TCTA-GAGGTACCTA
8867218 TACTTCT-TCAGAGGTACCTA
1 TACTTCTCT-AGAGGTACCTA
8867238 TAC
1 TAC
8867241 CTCTATTCAG
Statistics
Matches: 34, Mismatches: 8, Indels: 6
0.71 0.17 0.12
Matches are distributed among these distances:
20 17 0.50
21 3 0.09
22 14 0.41
ACGTcount: A:0.26, C:0.29, G:0.14, T:0.31
Consensus pattern (20 bp):
TACTTCTCTAGAGGTACCTA
Found at i:8874723 original size:89 final size:88
Alignment explanation
Indices: 8874600--8875799 Score: 875
Period size: 89 Copynumber: 13.3 Consensus size: 88
8874590 CATCATGGTG
* * *** * * * * *
8874600 AATCTTATCTCTCTAAAGTTGCAAAAGAGTAGATTAAAGTTTCAAATCTTATCTCCATAAAGTTG
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTTACAAATCTTATCTCCCTGAAGTTG
*
8874665 CAGTGGAGCAGATCGAAGATAGCA
66 CAGTGGAGCAGATTGAAGATA-CA
* * * * * *
8874689 AATCTTCTCTCTCTGAAGTTGCAGTAGAGCAGATTGAAGCTAAAAATCTTATCTCTCTGAAGTTG
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTTACAAATCTTATCTCCCTGAAGTTG
* * *
8874754 TAGTAGAGCAGATTGAAGCTACA
66 CAGTGGAGCAGATTGAAGATACA
* * * * *
8874777 AATCTTATCTCTCTGAAGTTACAGTAGAGCAGATTGAAGCTACAAATCTTATCTCCCTGAAGTTA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTTACAAATCTTATCTCCCTGAAGTTG
* *
8874842 CAGTGGAGTAGATTGAAGCTACA
66 CAGTGGAGCAGATTGAAGATACA
* * * * * * *
8874865 AATCTCATCTCCTTAAAGTTGCAGTGGAGCAGATTGAAGATAGCGAATCTTATTTCCCTAAAGTT
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTTA-CAAATCTTATCTCCCTGAAGTT
* * *
8874930 GTAGTGGAACAGATTAAAGCTACTAATTACA
65 GCAGTGGAGCAGATTGAAG------A-TACA
* * * * * * *
8874961 AATCTTATTTGCCTGAAGTTGCAGTGAAGTAGATTGAA-TATACTAATCTTATTTCTCTGAAGTT
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGT-TACAAATCTTATCTCCCTGAAGTT
* *
8875025 GCAGTGGAACAGATTAAAGATACAAGTTACA
65 GCAGTGGAGCAGATT---G----AAGATACA
* * * * * * * *
8875056 AATCTTATCTCCCTAAAGTGGCAGTGGAGTAGATTGAAGATGCGAATCTTATTTCCCTGGAGTTG
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTTACAAATCTTATCTCCCTGAAGTTG
* * *
8875121 CAGTGTAACAGATTAAAGCTACAATTTACA
66 CAGTGGAGCAGATTGAAG-----A--TACA
* * * *
8875151 AATCTTATCTCCCTGAAGTTGCAGTAGAGCAGATTGTAGATAACAAATCTTATCTCTCTGAAGTT
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAG-TTACAAATCTTATCTCCCTGAAGTT
* *
8875216 GCAGTAGAGCAGATTGAAGCTACA
65 GCAGTGGAGCAGATTGAAGATACA
* * * * * * * *** * *
8875240 AAACTTATCTCTCTGAAGTTGCAGTGAAGCAGATTGTAGATAGAAAATCTTCTCAATCTAAAGCT
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTTA-CAAATCTTATCTCCCTGAAGTT
*
8875305 GCAGTAGAGCAGATTG-A-ATACA
65 GCAGTGGAGCAGATTGAAGATACA
* ** * * * * ** *
8875327 GTGAATCTTATCTCCCTTATTTTTCAATGGAACAGATTGAAGATAGTGAATCTTATTTCCCTGAA
1 ---AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTTA-CAAATCTTATCTCCCTGAA
* * * *
8875392 GTTACAGTGGAACAGATTAAAGTTACA
62 GTTGCAGTGGAGCAGATTGAAGATACA
* * * * * *
8875419 AGTCTCATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAGTAAATCTTATTTCCCTGAAGTG
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTTA-CAAATCTTATCTCCCTGAAGTT
* * * *
8875484 GTAGTGGAACAGATTAAAGTTACA
65 GCAGTGGAGCAGATTGAAGATACA
* * * * * * *
8875508 AGT-TACATCTCCCTAAAGTTGCTGTGGAGCATATTGAAGTTACAAATCTTATCTCCCTAAATTT
1 AATCT-TATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTTACAAATCTTATCTCCCTGAAGTT
** *
8875572 GCAGTAAAGCGGATTGAAGATAGCA
65 GCAGTGGAGCAGATTGAAGATA-CA
* * *
8875597 AATCTTATCTCCCTGAAGTTGCAATGGAACAGATTGAAGTTACAAATCTTATCTCCATGAAGTTG
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTTACAAATCTTATCTCCCTGAAGTTG
*
8875662 CAGTGGAGCAGATTCAA-ATTACA
66 CAGTGGAGCAGATTGAAGA-TACA
* * * * * * * * * *
8875685 AATCTCATCCCCCTAAAGTTGCAGTGAAGTAGATTAAAGCTGCAAATCTAATCTCTCTGAAGTTG
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTTACAAATCTTATCTCCCTGAAGTTG
* *
8875750 CAGTGGAGTAGATTAAAGCA-ACA
66 CAGTGGAGCAGATTGAAG-ATACA
* *
8875773 AATTTTATAC-CTCTGAAGTTGCAGTGG
1 AATCTTAT-CTCCCTGAAGTTGCAGTGG
8875800 GTTAGAATGA
Statistics
Matches: 890, Mismatches: 183, Indels: 77
0.77 0.16 0.07
Matches are distributed among these distances:
87 4 0.00
88 248 0.28
89 358 0.40
90 60 0.07
91 1 0.00
92 4 0.00
95 142 0.16
96 70 0.08
102 3 0.00
ACGTcount: A:0.34, C:0.17, G:0.20, T:0.30
Consensus pattern (88 bp):
AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTTACAAATCTTATCTCCCTGAAGTTG
CAGTGGAGCAGATTGAAGATACA
Found at i:8874750 original size:44 final size:44
Alignment explanation
Indices: 8874600--8875799 Score: 909
Period size: 44 Copynumber: 26.6 Consensus size: 44
8874590 CATCATGGTG
* * *** * * * *
8874600 AATCTTATCTCTCTAAAGTTGCAAAAGAGTAGATTAAAGTTTCA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATACA
* * *
8874644 AATCTTATCTCCATAAAGTTGCAGTGGAGCAGATCGAAGATAGCA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATA-CA
* * * * *
8874689 AATCTTCTCTCTCTGAAGTTGCAGTAGAGCAGATTGAAGCTAAA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATACA
* * * *
8874733 AATCTTATCTCTCTGAAGTTGTAGTAGAGCAGATTGAAGCTACA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATACA
* * * *
8874777 AATCTTATCTCTCTGAAGTTACAGTAGAGCAGATTGAAGCTACA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATACA
* * *
8874821 AATCTTATCTCCCTGAAGTTACAGTGGAGTAGATTGAAGCTACA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATACA
* * * *
8874865 AATCTCATCTCCTTAAAGTTGCAGTGGAGCAGATTGAAGATAGCG
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATA-CA
* * * * *
8874910 AATCTTATTTCCCTAAAGTTGTAGTGGAACAGATTAAAGCTACTAATTACA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAG------A-TACA
* * * * * *
8874961 AATCTTATTTGCCTGAAGTTGCAGTGAAGTAGATTGAATATACT
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATACA
* * * *
8875005 AATCTTATTTCTCTGAAGTTGCAGTGGAACAGATTAAAGATACAAGTTACA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATT---G----AAGATACA
* * * * *
8875056 AATCTTATCTCCCTAAAGTGGCAGTGGAGTAGATTGAAGATGCG
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATACA
* * * * *
8875100 AATCTTATTTCCCTGGAGTTGCAGTGTAACAGATTAAAGCTACAATTTACA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAG-----A--TACA
* *
8875151 AATCTTATCTCCCTGAAGTTGCAGTAGAGCAGATTGTAGATAACA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGAT-ACA
* * *
8875196 AATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATTGAAGCTACA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATACA
* * * * *
8875240 AAACTTATCTCTCTGAAGTTGCAGTGAAGCAGATTGTAGATAGAA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATA-CA
* *** * * *
8875285 AATCTTCTCAATCTAAAGCTGCAGTAGAGCAGATTG-A-ATACA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATACA
* ** * * * **
8875327 GTGAATCTTATCTCCCTTATTTTTCAATGGAACAGATTGAAGATAGTG
1 ---AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATA-CA
* * * * *
8875375 AATCTTATTTCCCTGAAGTTACAGTGGAACAGATTAAAGTTACA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATACA
* * *
8875419 AGTCTCATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAGTA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATA-CA
* * * * * *
8875464 AATCTTATTTCCCTGAAGTGGTAGTGGAACAGATTAAAGTTACA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATACA
* * * * * *
8875508 AGT-TACATCTCCCTAAAGTTGCTGTGGAGCATATTGAAGTTACA
1 AATCT-TATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATACA
* * ** *
8875552 AATCTTATCTCCCTAAATTTGCAGTAAAGCGGATTGAAGATAGCA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATA-CA
* * *
8875597 AATCTTATCTCCCTGAAGTTGCAATGGAACAGATTGAAGTTACA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATACA
* *
8875641 AATCTTATCTCCATGAAGTTGCAGTGGAGCAGATTCAA-ATTACA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGA-TACA
* * * * * * * *
8875685 AATCTCATCCCCCTAAAGTTGCAGTGAAGTAGATTAAAGCTGCA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATACA
* * * *
8875729 AATCTAATCTCTCTGAAGTTGCAGTGGAGTAGATTAAAGCA-ACA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAG-ATACA
* *
8875773 AATTTTATAC-CTCTGAAGTTGCAGTGG
1 AATCTTAT-CTCCCTGAAGTTGCAGTGG
8875800 GTTAGAATGA
Statistics
Matches: 925, Mismatches: 192, Indels: 78
0.77 0.16 0.07
Matches are distributed among these distances:
42 1 0.00
43 4 0.00
44 536 0.58
45 273 0.30
46 2 0.00
47 4 0.00
48 1 0.00
49 1 0.00
51 101 0.11
52 2 0.00
ACGTcount: A:0.34, C:0.17, G:0.20, T:0.30
Consensus pattern (44 bp):
AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATACA
Found at i:8874807 original size:133 final size:132
Alignment explanation
Indices: 8874600--8875799 Score: 927
Period size: 133 Copynumber: 8.9 Consensus size: 132
8874590 CATCATGGTG
* ** * * * * * *
8874600 AATCTTATCTCTCTAAAGTTGCAAAAGAGTAGATTAAAGTTTCAAATCTTATCTCCATAAAGTTG
1 AATCTTATCTCCCTAAAGTTGCAGTAGAGCAGATTGAAGATACAAATCTTATCTCCCTGAAGTTG
* * * *
8874665 CAGTGGAGCAGATCGAAGATAGCAAATCTTCTCTCTCTGAAGTTGCAGTAGAGCAGATTGAAGCT
66 CAGTGGAGCAGATTGAAGATA-CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCT
*
8874730 AAA
130 ACA
* * * * * *
8874733 AATCTTATCTCTCTGAAGTTGTAGTAGAGCAGATTGAAGCTACAAATCTTATCTCTCTGAAGTTA
1 AATCTTATCTCCCTAAAGTTGCAGTAGAGCAGATTGAAGATACAAATCTTATCTCCCTGAAGTTG
* * * *
8874798 CAGTAGAGCAGATTGAAGCTACAAATCTTATCTCCCTGAAGTTACAGTGGAGTAGATTGAAGCTA
66 CAGTGGAGCAGATTGAAGATACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCTA
8874863 CA
131 CA
* * * * * *
8874865 AATCTCATCTCCTTAAAGTTGCAGTGGAGCAGATTGAAGATAGCGAATCTTATTTCCCTAAAGTT
1 AATCTTATCTCCCTAAAGTTGCAGTAGAGCAGATTGAAGATA-CAAATCTTATCTCCCTGAAGTT
* * * * * * *
8874930 GTAGTGGAACAGATTAAAGCTACTAATTACAAATCTTATTTGCCTGAAGTTGCAGTGAAGTAGAT
65 GCAGTGGAGCAGATTGAAG------A-TACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGAT
** *
8874995 TGAATATACT
123 TGAAGCTACA
* * * * * *
8875005 AATCTTATTTCTCTGAAGTTGCAGTGGAACAGATTAAAGATACAAGTTACAAATCTTATCTCCCT
1 AATCTTATCTCCCTAAAGTTGCAGTAGAGCAGATT---G----AAGATACAAATCTTATCTCCCT
* * * * * * * * *
8875070 AAAGTGGCAGTGGAGTAGATTGAAGATGCGAATCTTATTTCCCTGGAGTTGCAGTGTAACAGATT
59 GAAGTTGCAGTGGAGCAGATTGAAGATACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATT
*
8875135 AAAGCTACAATTTACA
124 GAAG---C----TACA
* * *
8875151 AATCTTATCTCCCTGAAGTTGCAGTAGAGCAGATTGTAGATAACAAATCTTATCTCTCTGAAGTT
1 AATCTTATCTCCCTAAAGTTGCAGTAGAGCAGATTGAAGAT-ACAAATCTTATCTCCCTGAAGTT
* * * * * * *
8875216 GCAGTAGAGCAGATTGAAGCTACAAAACTTATCTCTCTGAAGTTGCAGTGAAGCAGATTGTAGAT
65 GCAGTGGAGCAGATTGAAGATACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCT
*
8875281 AGAA
130 A-CA
* *** * * **
8875285 AATCTTCTCAATCTAAAGCTGCAGTAGAGCAGATTG-A-ATACAGTGAATCTTATCTCCCTTATT
1 AATCTTATCTCCCTAAAGTTGCAGTAGAGCAGATTGAAGATACA---AATCTTATCTCCCTGAAG
* * * ** * * * *
8875348 TTTCAATGGAACAGATTGAAGATAGTGAATCTTATTTCCCTGAAGTTACAGTGGAACAGATTAAA
63 TTGCAGTGGAGCAGATTGAAGATA-CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAA
*
8875413 GTTACA
127 GCTACA
* * * * * * *
8875419 AGTCTCATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAGTAAATCTTATTTCCCTGAAGTG
1 AATCTTATCTCCCTAAAGTTGCAGTAGAGCAGATTGAAGATA-CAAATCTTATCTCCCTGAAGTT
* * * * * * * * * *
8875484 GTAGTGGAACAGATTAAAGTTACAAGT-TACATCTCCCTAAAGTTGCTGTGGAGCATATTGAAGT
65 GCAGTGGAGCAGATTGAAGATACAAATCT-TATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGC
8875548 TACA
129 TACA
* * *
8875552 AATCTTATCTCCCTAAATTTGCAGTAAAGCGGATTGAAGATAGCAAATCTTATCTCCCTGAAGTT
1 AATCTTATCTCCCTAAAGTTGCAGTAGAGCAGATTGAAGATA-CAAATCTTATCTCCCTGAAGTT
* * * * * **
8875617 GCAATGGAACAGATTGAAGTTACAAATCTTATCTCCATGAAGTTGCAGTGGAGCAGATTCAAATT
65 GCAGTGGAGCAGATTGAAGATACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCT
8875682 ACA
130 ACA
* * * * * * * *
8875685 AATCTCATCCCCCTAAAGTTGCAGT-GAAGTAGATTAAAGCTGCAAATCTAATCTCTCTGAAGTT
1 AATCTTATCTCCCTAAAGTTGCAGTAG-AGCAGATTGAAGATACAAATCTTATCTCCCTGAAGTT
* * * *
8875749 GCAGTGGAGTAGATTAAAGCA-ACAAATTTTATAC-CTCTGAAGTTGCAGTGG
65 GCAGTGGAGCAGATTGAAG-ATACAAATCTTAT-CTCCCTGAAGTTGCAGTGG
8875800 GTTAGAATGA
Statistics
Matches: 839, Mismatches: 192, Indels: 73
0.76 0.17 0.07
Matches are distributed among these distances:
131 3 0.00
132 138 0.16
133 282 0.34
134 125 0.15
135 34 0.04
136 3 0.00
137 1 0.00
139 37 0.04
140 141 0.17
143 2 0.00
146 68 0.08
147 5 0.01
ACGTcount: A:0.34, C:0.17, G:0.20, T:0.30
Consensus pattern (132 bp):
AATCTTATCTCCCTAAAGTTGCAGTAGAGCAGATTGAAGATACAAATCTTATCTCCCTGAAGTTG
CAGTGGAGCAGATTGAAGATACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCTA
CA
Found at i:8875199 original size:235 final size:221
Alignment explanation
Indices: 8874600--8875763 Score: 828
Period size: 221 Copynumber: 5.2 Consensus size: 221
8874590 CATCATGGTG
* *** * * * * *
8874600 AATCTTATCTCTCTAAAGTTG-CAAAAGAGTAGATTAAAGTTTCAAATCTTATCTCCATAAAGTT
1 AATCTTATCTCCCTAAAG-TGACAGTGGAGTAGATTGAAGATACAAATCTCATCTCCCTAAAGTT
* ** * * * *
8874664 GCAGTGGAGCAGATCGAAGATAGCAAATCTTCTCTCTCTGAAGTTGCAGTAGAGCAGATTGAAGC
65 GCAGTGGAACAGATTAAAGATAGCAAATCTTATCTCCCTGAAGTTGCAGTAGAGCAGATTGTAGA
*
8874729 TAA-AAATCTTATCTCTCTGAAGTTGTAGTAGAGCAGATTGAAGCTACAAATCTTATCTCTCTGA
130 TAACAAATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATTGAAGCTACAAATCTTATCTCTCTGA
* *
8874793 AGTTACAGTAGAGCAGATTGAAGCTACA
195 AGTTGCAGT-GAACAGATTGAAGCTACA
* * * *
8874821 AATCTTATCTCCCTGAAGTTACAGTGGAGTAGATTGAAGCTACAAATCTCATCTCCTTAAAGTTG
1 AATCTTATCTCCCTAAAGTGACAGTGGAGTAGATTGAAGATACAAATCTCATCTCCCTAAAGTTG
* * * * * * * *
8874886 CAGTGGAGCAGATTGAAGATAGCGAATCTTATTTCCCTAAAGTTGTAGTGGAACAGATTAAAGCT
66 CAGTGGAACAGATTAAAGATAGCAAATCTTATCTCCCTGAAGTTGCAGTAGAGCAGATT---G-T
* * * * ** * *
8874951 ACTAATTACAAATCTTATTTGC-CTGAAGTTGCAGT-GAAGTAGATTGAATATACTAATCTTATT
127 A--GATAACAAATCTTATCT-CTCTGAAGTTGCAGTAG-AGCAGATTGAAGCTACAAATCTTATC
*
8875014 TCTCTGAAGTTGCAGTGGAACAGATTAAAGATACAAGTTACA
188 TCTCTGAAGTTGCAGT-GAACAGATT---G----AAGCTACA
* * * * * **
8875056 AATCTTATCTCCCTAAAGTGGCAGTGGAGTAGATTGAAGATGCGAATCTTATTTCCCTGGAGTTG
1 AATCTTATCTCCCTAAAGTGACAGTGGAGTAGATTGAAGATACAAATCTCATCTCCCTAAAGTTG
*
8875121 CAGTGTAACAGATTAAAGCTACAATTTA-CAAATCTTATCTCCCTGAAGTTGCAGTAGAGCAGAT
66 CAGTGGAACAGATTAAAG-----A--TAGCAAATCTTATCTCCCTGAAGTTGCAGTAGAGCAGAT
*
8875185 TGTAGATAACAAATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATTGAAGCTACAAAACTTATCT
124 TGTAGATAACAAATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATTGAAGCTACAAATCTTATCT
* * *
8875250 CTCTGAAGTTGCAGTGAAGCAGATTGTAGATAGAA
189 CTCTGAAGTTGCAGTGAA-CAGATTGAAGCTA-CA
* *** * * * * *
8875285 AATCTTCTCAATCTAAAGCTG-CAGTAGAGCAGATTG-A-ATACAGTGAATCTTATCTCCCTTAT
1 AATCTTATCTCCCTAAAG-TGACAGTGGAGTAGATTGAAGATACA---AATCTCATCTCCCTAAA
* * * * ** * * * * **
8875347 TTTTCAATGGAACAGATTGAAGATAGTGAATCTTATTTCCCTGAAGTTACAGTGGAACAGATTAA
62 GTTGCAGTGGAACAGATTAAAGATAGCAAATCTTATCTCCCTGAAGTTGCAGTAGAGCAGATTGT
* * * * * * * * *
8875412 AG-TTACAAGTCTCATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAGTAAATCTTATTTCC
127 AGATAACAAATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATTGAAGCTA-CAAATCTTATCTCT
* * * *
8875476 CTGAAGTGGTAGTGGAACAGATTAAAGTTACA
191 CTGAAGTTGCAGT-GAACAGATTGAAGCTACA
* * * * * * * *
8875508 AGT-TACATCTCCCTAAAGTTG-CTGTGGAGCATATTGAAGTTACAAATCTTATCTCCCTAAATT
1 AATCT-TATCTCCCTAAAG-TGACAGTGGAGTAGATTGAAGATACAAATCTCATCTCCCTAAAGT
* * * * * * *
8875571 TGCAGT-AAAGCGGATTGAAGATAGCAAATCTTATCTCCCTGAAGTTGCAATGGAACAGATTGAA
64 TGCAGTGGAA-CAGATTAAAGATAGCAAATCTTATCTCCCTGAAGTTGCAGTAGAGCAGATTGTA
* * * ** * * *
8875635 G-TTACAAATCTTATCTC-CATGAAGTTGCAGTGGAGCAGATTCAAATTACAAATCTCATCCCCC
128 GATAACAAATCTTATCTCTC-TGAAGTTGCAGTAGAGCAGATTGAAGCTACAAATCTTATCTCTC
* * * *
8875698 TAAAGTTGCAGTGAAGTAGATTAAAGCTGCA
192 TGAAGTTGCAGTGAA-CAGATTGAAGCTACA
* * *
8875729 AATCTAATCTCTCTGAAGTTG-CAGTGGAGTAGATT
1 AATCTTATCTCCCTAAAG-TGACAGTGGAGTAGATT
8875764 AAAGCAACAA
Statistics
Matches: 748, Mismatches: 153, Indels: 84
0.76 0.16 0.09
Matches are distributed among these distances:
220 4 0.01
221 163 0.22
222 111 0.15
223 68 0.09
224 66 0.09
225 9 0.01
227 6 0.01
228 71 0.09
229 29 0.04
230 32 0.04
231 1 0.00
232 1 0.00
234 4 0.01
235 145 0.19
236 1 0.00
237 2 0.00
238 1 0.00
240 1 0.00
241 31 0.04
242 2 0.00
ACGTcount: A:0.33, C:0.17, G:0.20, T:0.30
Consensus pattern (221 bp):
AATCTTATCTCCCTAAAGTGACAGTGGAGTAGATTGAAGATACAAATCTCATCTCCCTAAAGTTG
CAGTGGAACAGATTAAAGATAGCAAATCTTATCTCCCTGAAGTTGCAGTAGAGCAGATTGTAGAT
AACAAATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATTGAAGCTACAAATCTTATCTCTCTGAA
GTTGCAGTGAACAGATTGAAGCTACA
Found at i:8877501 original size:21 final size:22
Alignment explanation
Indices: 8877476--8877525 Score: 75
Period size: 22 Copynumber: 2.3 Consensus size: 22
8877466 ATGTTGTTCA
*
8877476 TATTTATACA-TTTTCGCTCAT
1 TATTTATACATTTTTCACTCAT
*
8877497 TATTTGTACATTTTTCACTCAT
1 TATTTATACATTTTTCACTCAT
8877519 TATTTAT
1 TATTTAT
8877526 TTATATTTTT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
21 9 0.36
22 16 0.64
ACGTcount: A:0.24, C:0.16, G:0.04, T:0.56
Consensus pattern (22 bp):
TATTTATACATTTTTCACTCAT
Found at i:8882418 original size:64 final size:63
Alignment explanation
Indices: 8882314--8882484 Score: 211
Period size: 64 Copynumber: 2.7 Consensus size: 63
8882304 CCTATGTATC
* * **
8882314 TTACACGGCCTA-ACACA-ACCATTTCCTCCGCTCGTGTGATCCTTATTTTGTAATCAGTGAG
1 TTACACGGCCTAGACACAGCCCATGTCCTTAGCTCGTGTGATCCTTATTTTGTAATCAGTGAG
*
8882375 TTACACGGCCTAGACACATGCCCATGTCCTTGGCTCGTGTGATCCTTATTTTGTAATCAGTGAG
1 TTACACGGCCTAGACACA-GCCCATGTCCTTAGCTCGTGTGATCCTTATTTTGTAATCAGTGAG
* * * * * *
8882439 TTACATGGCCAAGACACACGCTCGTGTCCTTAGCCCGTGTAATCCT
1 TTACACGGCCTAGACACA-GCCCATGTCCTTAGCTCGTGTGATCCT
8882485 GCGTTAACAT
Statistics
Matches: 95, Mismatches: 12, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
61 12 0.13
62 5 0.05
64 78 0.82
ACGTcount: A:0.22, C:0.28, G:0.19, T:0.31
Consensus pattern (63 bp):
TTACACGGCCTAGACACAGCCCATGTCCTTAGCTCGTGTGATCCTTATTTTGTAATCAGTGAG
Found at i:8883055 original size:6 final size:6
Alignment explanation
Indices: 8883044--8883096 Score: 52
Period size: 6 Copynumber: 8.5 Consensus size: 6
8883034 AACAATTGGT
* * * *
8883044 AAAAGA AAAAGA AAATGA AATATGA AAATGA AGAAGA AAAAGGA AAAAGA
1 AAAAGA AAAAGA AAAAGA AA-AAGA AAAAGA AAAAGA AAAA-GA AAAAGA
8883094 AAA
1 AAA
8883097 GGAACTAGAA
Statistics
Matches: 41, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
6 29 0.71
7 12 0.29
ACGTcount: A:0.74, C:0.00, G:0.19, T:0.08
Consensus pattern (6 bp):
AAAAGA
Found at i:8883106 original size:12 final size:12
Alignment explanation
Indices: 8883044--8883100 Score: 53
Period size: 13 Copynumber: 4.7 Consensus size: 12
8883034 AACAATTGGT
8883044 AAAA-GAAAAAG
1 AAAAGGAAAAAG
* *
8883055 AAAATGAAATATG
1 AAAAGGAAA-AAG
* *
8883068 AAAATGAAGAAG
1 AAAAGGAAAAAG
8883080 AAAAAGGAAAAAG
1 -AAAAGGAAAAAG
8883093 AAAAGGAA
1 AAAAGGAA
8883101 CTAGAAGAGG
Statistics
Matches: 38, Mismatches: 5, Indels: 5
0.79 0.10 0.10
Matches are distributed among these distances:
11 4 0.11
12 14 0.37
13 20 0.53
ACGTcount: A:0.72, C:0.00, G:0.21, T:0.07
Consensus pattern (12 bp):
AAAAGGAAAAAG
Found at i:8883595 original size:13 final size:13
Alignment explanation
Indices: 8883579--8883635 Score: 51
Period size: 15 Copynumber: 4.0 Consensus size: 13
8883569 ATTTTCAATT
8883579 AAAATTATAAATA
1 AAAATTATAAATA
* *
8883592 AAAATAATAAGTTTA
1 AAAATTATAA--ATA
8883607 AAAATTATCAAATA
1 AAAATTAT-AAATA
8883621 AAATATTATTAAATA
1 AAA-ATTA-TAAATA
8883636 TTTAATTCAA
Statistics
Matches: 35, Mismatches: 4, Indels: 8
0.74 0.09 0.17
Matches are distributed among these distances:
13 9 0.26
14 5 0.14
15 18 0.51
16 3 0.09
ACGTcount: A:0.63, C:0.02, G:0.02, T:0.33
Consensus pattern (13 bp):
AAAATTATAAATA
Found at i:8888322 original size:19 final size:19
Alignment explanation
Indices: 8888294--8888330 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
8888284 TGAAACATGA
*
8888294 AATGGGATGATAATGAAAC
1 AATGGAATGATAATGAAAC
8888313 AATGGAATGATAATGAAA
1 AATGGAATGATAATGAAA
8888331 TAGAAGTCTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.51, C:0.03, G:0.24, T:0.22
Consensus pattern (19 bp):
AATGGAATGATAATGAAAC
Found at i:8892669 original size:19 final size:20
Alignment explanation
Indices: 8892630--8892678 Score: 82
Period size: 19 Copynumber: 2.5 Consensus size: 20
8892620 AAGGATACGT
8892630 AATCTTAGATATGATATATGC
1 AATCTTAGATATGA-ATATGC
8892651 AATCTTAGATATG-ATATGC
1 AATCTTAGATATGAATATGC
8892670 AATCTTAGA
1 AATCTTAGA
8892679 AGACATGATT
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
19 15 0.54
21 13 0.46
ACGTcount: A:0.39, C:0.10, G:0.14, T:0.37
Consensus pattern (20 bp):
AATCTTAGATATGAATATGC
Found at i:8898394 original size:37 final size:37
Alignment explanation
Indices: 8898344--8898416 Score: 137
Period size: 37 Copynumber: 2.0 Consensus size: 37
8898334 AAAAACAAAT
8898344 GTTGAAGGGTAAAATACTCTAAAAATAATATAATTTG
1 GTTGAAGGGTAAAATACTCTAAAAATAATATAATTTG
*
8898381 GTTGAAGGGTAAAATACTCTCAAAATAATATAATTT
1 GTTGAAGGGTAAAATACTCTAAAAATAATATAATTT
8898417 ACTTTATAAA
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 35 1.00
ACGTcount: A:0.45, C:0.07, G:0.15, T:0.33
Consensus pattern (37 bp):
GTTGAAGGGTAAAATACTCTAAAAATAATATAATTTG
Found at i:8912553 original size:22 final size:22
Alignment explanation
Indices: 8912476--8912553 Score: 102
Period size: 22 Copynumber: 3.5 Consensus size: 22
8912466 CAAGTAAATG
* * *
8912476 GAGAGCACCAATGTGCTATACA
1 GAGAACACAAATGTGCTAAACA
**
8912498 GAGAACACAAACATGCTAAACA
1 GAGAACACAAATGTGCTAAACA
8912520 GAGAACACAAATGTGCTAAACA
1 GAGAACACAAATGTGCTAAACA
*
8912542 GAGAGCACAAAT
1 GAGAACACAAAT
8912554 ATTCTAGAAA
Statistics
Matches: 48, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 48 1.00
ACGTcount: A:0.47, C:0.21, G:0.19, T:0.13
Consensus pattern (22 bp):
GAGAACACAAATGTGCTAAACA
Found at i:8912859 original size:8 final size:8
Alignment explanation
Indices: 8912846--8912870 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
8912836 TTTACAAATC
8912846 TCATAATT
1 TCATAATT
8912854 TCATAATT
1 TCATAATT
8912862 TCATAATT
1 TCATAATT
8912870 T
1 T
8912871 GTTTAATATC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.36, C:0.12, G:0.00, T:0.52
Consensus pattern (8 bp):
TCATAATT
Found at i:8915840 original size:42 final size:42
Alignment explanation
Indices: 8915769--8915865 Score: 113
Period size: 42 Copynumber: 2.3 Consensus size: 42
8915759 ATAAGATTTG
* * *
8915769 CATGTTAAGTATGTCAACTGTATTAATTATAAATCCGATTCA
1 CATGTTAAGCATGTCAACTATACTAATTATAAATCCGATTCA
* * ** *
8915811 CATGTTAAGCATGTCAACTATGCTGATTATAAATTTGATTCG
1 CATGTTAAGCATGTCAACTATACTAATTATAAATCCGATTCA
*
8915853 CATGTTCAGCATG
1 CATGTTAAGCATG
8915866 CCATTGAAAA
Statistics
Matches: 46, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
42 46 1.00
ACGTcount: A:0.32, C:0.15, G:0.15, T:0.37
Consensus pattern (42 bp):
CATGTTAAGCATGTCAACTATACTAATTATAAATCCGATTCA
Found at i:8915989 original size:24 final size:24
Alignment explanation
Indices: 8915953--8916046 Score: 109
Period size: 24 Copynumber: 3.9 Consensus size: 24
8915943 TTTTATTGCA
* *
8915953 TTATTGAATGGCTTGGCCACAACT
1 TTATTGAGTGGCTTGACCACAACT
*
8915977 TTATTGAGCGGCTTGACCACAA-T
1 TTATTGAGTGGCTTGACCACAACT
* * * *
8916000 GCTATTGAGTGGCTTGTCTACAACA
1 -TTATTGAGTGGCTTGACCACAACT
8916025 TTATTGAGTGGCTTGACCACAA
1 TTATTGAGTGGCTTGACCACAA
8916047 TGATGCAGCT
Statistics
Matches: 57, Mismatches: 11, Indels: 4
0.79 0.15 0.06
Matches are distributed among these distances:
23 1 0.02
24 56 0.98
ACGTcount: A:0.26, C:0.20, G:0.22, T:0.32
Consensus pattern (24 bp):
TTATTGAGTGGCTTGACCACAACT
Found at i:8916029 original size:48 final size:48
Alignment explanation
Indices: 8915954--8916048 Score: 145
Period size: 48 Copynumber: 2.0 Consensus size: 48
8915944 TTTATTGCAT
*
8915954 TATTGAATGGCTTGGCCACAACTTTATTGAGCGGCTTGACCACAATGC
1 TATTGAATGGCTTGGCCACAACATTATTGAGCGGCTTGACCACAATGC
* * * *
8916002 TATTGAGTGGCTTGTCTACAACATTATTGAGTGGCTTGACCACAATG
1 TATTGAATGGCTTGGCCACAACATTATTGAGCGGCTTGACCACAATG
8916049 ATGCAGCTTG
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
48 42 1.00
ACGTcount: A:0.25, C:0.20, G:0.23, T:0.32
Consensus pattern (48 bp):
TATTGAATGGCTTGGCCACAACATTATTGAGCGGCTTGACCACAATGC
Found at i:8916093 original size:64 final size:64
Alignment explanation
Indices: 8916002--8916153 Score: 207
Period size: 64 Copynumber: 2.4 Consensus size: 64
8915992 ACCACAATGC
* * * *
8916002 TATTGAGTGGCTTGTCTACAACATTATTGAGTGGCTTGACCACAATGATGCAGCTTGACT-TCGA
1 TATTGAGTGGCTTGGCCACAACATTATTGAGTGACTTGACCACAACGATGCAGCTTGACTGT-GA
* *
8916066 TATTGAGTGGCTTGGCCACAACGTTATTGAGTGACTTGACCACAACGATGTAGCTTGACTGTGA
1 TATTGAGTGGCTTGGCCACAACATTATTGAGTGACTTGACCACAACGATGCAGCTTGACTGTGA
* * *
8916130 TATTAAGTGGCTTGACCATAACAT
1 TATTGAGTGGCTTGGCCACAACAT
8916154 GGTGTGTTAT
Statistics
Matches: 77, Mismatches: 10, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
64 76 0.99
65 1 0.01
ACGTcount: A:0.26, C:0.18, G:0.24, T:0.32
Consensus pattern (64 bp):
TATTGAGTGGCTTGGCCACAACATTATTGAGTGACTTGACCACAACGATGCAGCTTGACTGTGA
Found at i:8916094 original size:24 final size:24
Alignment explanation
Indices: 8916066--8916112 Score: 76
Period size: 24 Copynumber: 2.0 Consensus size: 24
8916056 TTGACTTCGA
* *
8916066 TATTGAGTGGCTTGGCCACAACGT
1 TATTGAGTGACTTGACCACAACGT
8916090 TATTGAGTGACTTGACCACAACG
1 TATTGAGTGACTTGACCACAACG
8916113 ATGTAGCTTG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.28
Consensus pattern (24 bp):
TATTGAGTGACTTGACCACAACGT
Found at i:8916810 original size:16 final size:18
Alignment explanation
Indices: 8916779--8916815 Score: 51
Period size: 16 Copynumber: 2.2 Consensus size: 18
8916769 GAATTTACAT
8916779 AAAATATTGATTTTTAAC
1 AAAATATTGATTTTTAAC
*
8916797 AAAATA-TG-TTTTTAGC
1 AAAATATTGATTTTTAAC
8916813 AAA
1 AAA
8916816 TTTTTTCATT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
16 10 0.56
17 2 0.11
18 6 0.33
ACGTcount: A:0.46, C:0.05, G:0.08, T:0.41
Consensus pattern (18 bp):
AAAATATTGATTTTTAAC
Done.