Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr08 ID=Chr08-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 57128820
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 677448 characters in sequence are not A, C, G, or T
File 48 of 190
Found at i:13628246 original size:24 final size:25
Alignment explanation
Indices: 13628208--13628265 Score: 64
Period size: 25 Copynumber: 2.4 Consensus size: 25
13628198 CAACTCGAAA
*
13628208 GAGCATCCCGTTA-TTAGCTCTCAT
1 GAGCATCCCGGTATTTAGCTCTCAT
* * *
13628232 GAGCATCCTGGTATTTGGCTCTTAT
1 GAGCATCCCGGTATTTAGCTCTCAT
*
13628257 GAGCTTCCC
1 GAGCATCCC
13628266 ATTATATGGT
Statistics
Matches: 27, Mismatches: 6, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
24 11 0.41
25 16 0.59
ACGTcount: A:0.17, C:0.28, G:0.21, T:0.34
Consensus pattern (25 bp):
GAGCATCCCGGTATTTAGCTCTCAT
Found at i:13628309 original size:24 final size:25
Alignment explanation
Indices: 13628247--13628311 Score: 78
Period size: 25 Copynumber: 2.6 Consensus size: 25
13628237 TCCTGGTATT
13628247 TGGCTCTTATGAGCTTCCCATTATA
1 TGGCTCTTATGAGCTTCCCATTATA
* ** * *
13628272 TGGTTCTTGCGAGCTTCCCGTT-TG
1 TGGCTCTTATGAGCTTCCCATTATA
13628296 TGGCTCTTATGAGCTT
1 TGGCTCTTATGAGCTT
13628312 TACGATTAAT
Statistics
Matches: 32, Mismatches: 8, Indels: 1
0.78 0.20 0.02
Matches are distributed among these distances:
24 14 0.44
25 18 0.56
ACGTcount: A:0.12, C:0.23, G:0.23, T:0.42
Consensus pattern (25 bp):
TGGCTCTTATGAGCTTCCCATTATA
Found at i:13628359 original size:24 final size:24
Alignment explanation
Indices: 13628332--13628398 Score: 82
Period size: 24 Copynumber: 2.8 Consensus size: 24
13628322 GGCTCTCTGA
13628332 AACTTCCCGATATTGGCTCGCT-TG
1 AACTTCCCGATATTGGCTCG-TATG
*
13628356 AACTTCCCGAAATTGGCTCGTATG
1 AACTTCCCGATATTGGCTCGTATG
* * *
13628380 AGCTTCCCGTTAATGGCTC
1 AACTTCCCGATATTGGCTC
13628399 TCCAGAGCTT
Statistics
Matches: 37, Mismatches: 5, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
23 1 0.03
24 36 0.97
ACGTcount: A:0.19, C:0.28, G:0.21, T:0.31
Consensus pattern (24 bp):
AACTTCCCGATATTGGCTCGTATG
Found at i:13633333 original size:2 final size:2
Alignment explanation
Indices: 13633320--13633350 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
13633310 TTGCCAGTGC
*
13633320 AT AT AT AA AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
13633351 AGATATTTAA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (2 bp):
AT
Found at i:13633333 original size:8 final size:8
Alignment explanation
Indices: 13633320--13633367 Score: 51
Period size: 8 Copynumber: 5.9 Consensus size: 8
13633310 TTGCCAGTGC
13633320 ATATATAA
1 ATATATAA
*
13633328 ATATATAT
1 ATATATAA
*
13633336 ATATATAT
1 ATATATAA
13633344 ATATATAA
1 ATATATAA
*
13633352 GATATTTAA
1 -ATATATAA
*
13633361 ATGTATA
1 ATATATA
13633368 CATAATTTAT
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
8 27 0.79
9 7 0.21
ACGTcount: A:0.52, C:0.00, G:0.04, T:0.44
Consensus pattern (8 bp):
ATATATAA
Found at i:13634281 original size:2 final size:2
Alignment explanation
Indices: 13634274--13634320 Score: 94
Period size: 2 Copynumber: 23.5 Consensus size: 2
13634264 AATTATACAC
13634274 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
13634316 AT AT A
1 AT AT A
13634321 ACATTGTATA
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 45 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:13636514 original size:2 final size:2
Alignment explanation
Indices: 13636509--13636541 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
13636499 ATATGTGAGG
13636509 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
13636542 AAAAAGTAAG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:13637486 original size:31 final size:31
Alignment explanation
Indices: 13637451--13637510 Score: 93
Period size: 31 Copynumber: 1.9 Consensus size: 31
13637441 CTCATTAACT
** *
13637451 CTTTTTAAAAAAGGTTAATGACTAAATTTGA
1 CTTTTTAAAAAAAATTAAAGACTAAATTTGA
13637482 CTTTTTAAAAAAAATTAAAGACTAAATTT
1 CTTTTTAAAAAAAATTAAAGACTAAATTT
13637511 AACTAAAAAA
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 26 1.00
ACGTcount: A:0.47, C:0.07, G:0.08, T:0.38
Consensus pattern (31 bp):
CTTTTTAAAAAAAATTAAAGACTAAATTTGA
Found at i:13637526 original size:24 final size:26
Alignment explanation
Indices: 13637489--13637541 Score: 67
Period size: 24 Copynumber: 2.1 Consensus size: 26
13637479 TGACTTTTTA
*
13637489 AAAAAAATTAAAGACT-AAATTTAACT
1 AAAAAAATTAAAGAATCAAA-TTAACT
13637515 AAAAAAA-T-AAGAATCAAATTAACT
1 AAAAAAATTAAAGAATCAAATTAACT
13637539 AAA
1 AAA
13637542 TATATATATA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
24 14 0.56
25 4 0.16
26 7 0.28
ACGTcount: A:0.66, C:0.08, G:0.04, T:0.23
Consensus pattern (26 bp):
AAAAAAATTAAAGAATCAAATTAACT
Found at i:13638081 original size:31 final size:31
Alignment explanation
Indices: 13638037--13638097 Score: 95
Period size: 31 Copynumber: 2.0 Consensus size: 31
13638027 ATGTGCATAA
13638037 TTAAATCAAAATAAAAGTTTCATATATATAT
1 TTAAATCAAAATAAAAGTTTCATATATATAT
* * *
13638068 TTAAATTATAATAAAAGTTTCATGTATATA
1 TTAAATCAAAATAAAAGTTTCATATATATA
13638098 ATTATACTAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 27 1.00
ACGTcount: A:0.49, C:0.05, G:0.05, T:0.41
Consensus pattern (31 bp):
TTAAATCAAAATAAAAGTTTCATATATATAT
Found at i:13646361 original size:12 final size:14
Alignment explanation
Indices: 13646326--13646374 Score: 50
Period size: 14 Copynumber: 3.5 Consensus size: 14
13646316 GGTAGGCAAC
13646326 TTTTTTTTTGC-GCT
1 TTTTTTTTTGCTG-T
13646340 TTTTGCTTTTT-CT-T
1 TTTT--TTTTTGCTGT
13646354 TTTTTTTTTGCTGT
1 TTTTTTTTTGCTGT
13646368 TTTTTTT
1 TTTTTTT
13646375 AAGAATAAGA
Statistics
Matches: 30, Mismatches: 0, Indels: 10
0.75 0.00 0.25
Matches are distributed among these distances:
12 5 0.17
13 2 0.07
14 17 0.57
15 1 0.03
16 5 0.17
ACGTcount: A:0.00, C:0.10, G:0.10, T:0.80
Consensus pattern (14 bp):
TTTTTTTTTGCTGT
Found at i:13646957 original size:3 final size:3
Alignment explanation
Indices: 13646949--13646980 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
13646939 GAATTAAGTA
13646949 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
13646981 GATACATAAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:13654780 original size:11 final size:10
Alignment explanation
Indices: 13654760--13654804 Score: 53
Period size: 10 Copynumber: 4.9 Consensus size: 10
13654750 CTATACATGG
13654760 ATTTTTATAT
1 ATTTTTATAT
13654770 ATTTTTA-AT
1 ATTTTTATAT
*
13654779 A-TTTTAT-G
1 ATTTTTATAT
13654787 A-TTTTATAT
1 ATTTTTATAT
13654796 ATTTTTATA
1 ATTTTTATA
13654805 ATTACTAGAA
Statistics
Matches: 30, Mismatches: 2, Indels: 6
0.79 0.05 0.16
Matches are distributed among these distances:
8 12 0.40
9 4 0.13
10 14 0.47
ACGTcount: A:0.31, C:0.00, G:0.02, T:0.67
Consensus pattern (10 bp):
ATTTTTATAT
Found at i:13654927 original size:9 final size:9
Alignment explanation
Indices: 13654915--13655125 Score: 64
Period size: 9 Copynumber: 22.6 Consensus size: 9
13654905 TTTTTTGTTT
13654915 TTTTTATAA
1 TTTTTATAA
13654924 TTTTTATATA
1 TTTTTATA-A
**
13654934 TTTAAATAA
1 TTTTTATAA
*
13654943 -ATTTA-AA
1 TTTTTATAA
13654950 TTATTTA-AA
1 TT-TTTATAA
13654959 TTATCTT-T-A
1 TT-T-TTATAA
13654968 TCTTTTATAA
1 T-TTTTATAA
*
13654978 TTATTTTTATAG
1 -T-T-TTTATAA
13654990 TTTATTATAA
1 TTT-TTATAA
13655000 -TTTTATAA
1 TTTTTATAA
*
13655008 GTATTTATAA
1 -TTTTTATAA
*
13655018 TATTTATAA
1 TTTTTATAA
*
13655027 GTTATTAT--
1 -TTTTTATAA
*
13655035 TTTTTGTAA
1 TTTTTATAA
13655044 TTTTTTTATAA
1 --TTTTTATAA
13655055 TTTTTATAA
1 TTTTTATAA
*
13655064 GTTTATATAAA
1 -TTTTTAT-AA
*
13655075 ATTTTA-ATA
1 TTTTTATA-A
*
13655084 TTTTAATAA
1 TTTTTATAA
*
13655093 TTTTAATAA
1 TTTTTATAA
*
13655102 TGTTTT-TAT
1 T-TTTTATAA
*
13655111 TTTTTTTACA
1 TTTTTATA-A
13655121 TTTTT
1 TTTTT
13655126 TATGTGAAAA
Statistics
Matches: 154, Mismatches: 23, Indels: 49
0.68 0.10 0.22
Matches are distributed among these distances:
7 7 0.05
8 15 0.10
9 65 0.42
10 48 0.31
11 13 0.08
12 6 0.04
ACGTcount: A:0.34, C:0.01, G:0.03, T:0.62
Consensus pattern (9 bp):
TTTTTATAA
Found at i:13654942 original size:19 final size:19
Alignment explanation
Indices: 13654920--13654988 Score: 52
Period size: 19 Copynumber: 3.6 Consensus size: 19
13654910 TGTTTTTTTT
13654920 ATAATTTTTATATATTTAA
1 ATAATTTTTATATATTTAA
* *
13654939 ATAA-ATTTAAATTATTTAA
1 ATAATTTTTATA-TATTTAA
* * *
13654958 ATTATCTTTATCT-TTTATA
1 ATAATTTTTATATATTTA-A
*
13654977 ATTATTTTTATA
1 ATAATTTTTATA
13654989 GTTTATTATA
Statistics
Matches: 39, Mismatches: 8, Indels: 6
0.74 0.15 0.11
Matches are distributed among these distances:
18 9 0.23
19 26 0.67
20 4 0.10
ACGTcount: A:0.39, C:0.03, G:0.00, T:0.58
Consensus pattern (19 bp):
ATAATTTTTATATATTTAA
Found at i:13654993 original size:19 final size:19
Alignment explanation
Indices: 13654953--13654994 Score: 50
Period size: 19 Copynumber: 2.3 Consensus size: 19
13654943 ATTTAAATTA
**
13654953 TTTA-AATTATCTTTATCT
1 TTTATAATTATCTTTATAG
*
13654971 TTTATAATTATTTTTATAG
1 TTTATAATTATCTTTATAG
13654990 TTTAT
1 TTTAT
13654995 TATAATTTTA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
18 4 0.20
19 16 0.80
ACGTcount: A:0.29, C:0.05, G:0.02, T:0.64
Consensus pattern (19 bp):
TTTATAATTATCTTTATAG
Found at i:13655002 original size:19 final size:20
Alignment explanation
Indices: 13654980--13655079 Score: 95
Period size: 18 Copynumber: 5.2 Consensus size: 20
13654970 TTTTATAATT
13654980 ATTTTTAT-AGTTTATTATA
1 ATTTTTATAAGTTTATTATA
*
13654999 A-TTTTATAAGTAT-TTATA
1 ATTTTTATAAGTTTATTATA
*
13655017 ATATTTATAAG-TTATTAT-
1 ATTTTTATAAGTTTATTATA
* * *
13655035 -TTTTTGTAATTTTTTTATA
1 ATTTTTATAAGTTTATTATA
*
13655054 ATTTTTATAAGTTTATATAAA
1 ATTTTTATAAGTTTAT-TATA
13655075 ATTTT
1 ATTTT
13655080 AATATTTTAA
Statistics
Matches: 63, Mismatches: 11, Indels: 12
0.73 0.13 0.14
Matches are distributed among these distances:
17 7 0.11
18 19 0.30
19 17 0.27
20 12 0.19
21 8 0.13
ACGTcount: A:0.34, C:0.00, G:0.05, T:0.61
Consensus pattern (20 bp):
ATTTTTATAAGTTTATTATA
Found at i:13655014 original size:10 final size:10
Alignment explanation
Indices: 13654971--13655028 Score: 50
Period size: 10 Copynumber: 5.9 Consensus size: 10
13654961 ATCTTTATCT
*
13654971 TTTATAATTA
1 TTTATAAGTA
* *
13654981 TTTTTATAGTT
1 TTTATA-AGTA
13654992 TATTATAA-T-
1 T-TTATAAGTA
13655001 TTTATAAGTA
1 TTTATAAGTA
13655011 TTTATAA-TA
1 TTTATAAGTA
13655020 TTTATAAGT
1 TTTATAAGT
13655029 TATTATTTTT
Statistics
Matches: 39, Mismatches: 4, Indels: 10
0.74 0.08 0.19
Matches are distributed among these distances:
8 6 0.15
9 11 0.28
10 14 0.36
11 4 0.10
12 4 0.10
ACGTcount: A:0.36, C:0.00, G:0.05, T:0.59
Consensus pattern (10 bp):
TTTATAAGTA
Found at i:13655024 original size:37 final size:39
Alignment explanation
Indices: 13654971--13655080 Score: 109
Period size: 37 Copynumber: 2.8 Consensus size: 39
13654961 ATCTTTATCT
*
13654971 TTTATAATTATTTTTATAGTTTATTATAATTTTATAA-GTA
1 TTTATAA-TATTTATA-AGTTTATTATAATTTTATAATGTA
* * * *
13655011 TTTATAATATTTATAAG-TTATTAT-TTTTTGTAATTTT
1 TTTATAATATTTATAAGTTTATTATAATTTTATAATGTA
* *
13655048 TTTATAATTTTTATAAGTTTATATAAAATTTTA
1 TTTATAATATTTATAAGTTTAT-TATAATTTTA
13655081 ATATTTTAAT
Statistics
Matches: 57, Mismatches: 9, Indels: 8
0.77 0.12 0.11
Matches are distributed among these distances:
36 7 0.12
37 24 0.42
38 6 0.11
39 9 0.16
40 11 0.19
ACGTcount: A:0.35, C:0.00, G:0.05, T:0.61
Consensus pattern (39 bp):
TTTATAATATTTATAAGTTTATTATAATTTTATAATGTA
Found at i:13655088 original size:37 final size:36
Alignment explanation
Indices: 13654970--13655110 Score: 108
Period size: 37 Copynumber: 3.7 Consensus size: 36
13654960 TATCTTTATC
*
13654970 TTTTATAATTATTTTTATAGTTTATTATAATTTT-ATAA
1 TTTTATAATT-TTTATA-AGTTTATTATAATTTTAAT-A
* ** *
13655008 GTATTTATAATATTTATAAG-TTATTATTTTTTGTAATTT
1 -T-TTTATAATTTTTATAAGTTTATTATAATTT-TAA-TA
*
13655047 TTTTATAATTTTTATAAGTTTATATAAAATTTTAATA
1 TTTTATAATTTTTATAAGTTTAT-TATAATTTTAATA
*
13655084 TTTTAATAATTTTAATAATGTTT-TTAT
1 TTTT-ATAATTTTTATAA-GTTTATTAT
13655111 TTTTTTTACA
Statistics
Matches: 82, Mismatches: 12, Indels: 18
0.73 0.11 0.16
Matches are distributed among these distances:
37 33 0.40
38 24 0.29
39 16 0.20
40 9 0.11
ACGTcount: A:0.35, C:0.00, G:0.04, T:0.61
Consensus pattern (36 bp):
TTTTATAATTTTTATAAGTTTATTATAATTTTAATA
Found at i:13655922 original size:22 final size:22
Alignment explanation
Indices: 13655894--13655935 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
13655884 TAAACTAATC
*
13655894 AGAGTTTGACTAGGAAAAGAGT
1 AGAGTTTCACTAGGAAAAGAGT
*
13655916 AGAGTTTCACTAGGAGAAGA
1 AGAGTTTCACTAGGAAAAGA
13655936 AACTCAGTGT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.40, C:0.07, G:0.31, T:0.21
Consensus pattern (22 bp):
AGAGTTTCACTAGGAAAAGAGT
Found at i:13656277 original size:15 final size:15
Alignment explanation
Indices: 13656253--13656284 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
13656243 ATTGAAGGAG
*
13656253 TTCTTCTAACTGGTA
1 TTCTTATAACTGGTA
13656268 TTCTTATAACTGGTA
1 TTCTTATAACTGGTA
13656283 TT
1 TT
13656285 GCTCAATTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.22, C:0.16, G:0.12, T:0.50
Consensus pattern (15 bp):
TTCTTATAACTGGTA
Found at i:13665351 original size:22 final size:22
Alignment explanation
Indices: 13665326--13665369 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
13665316 AAGCTCAATT
13665326 AAACTCATTAGTATTCAAGCTC
1 AAACTCATTAGTATTCAAGCTC
* *
13665348 AAACTCATTTGTATTTAAGCTC
1 AAACTCATTAGTATTCAAGCTC
13665370 TTTTTATATA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.34, C:0.20, G:0.09, T:0.36
Consensus pattern (22 bp):
AAACTCATTAGTATTCAAGCTC
Found at i:13671865 original size:6 final size:6
Alignment explanation
Indices: 13671854--13671880 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
13671844 AATCCAAAAG
13671854 TTTTAA TTTTAA TTTTAA TTTTAA TTT
1 TTTTAA TTTTAA TTTTAA TTTTAA TTT
13671881 CACAATTGAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (6 bp):
TTTTAA
Found at i:13676768 original size:17 final size:17
Alignment explanation
Indices: 13676748--13676780 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
13676738 TCTGCCAATC
13676748 CCTAGAGCTT-GCCAAAA
1 CCTAGAG-TTCGCCAAAA
13676765 CCTAGAGTTCGCCAAA
1 CCTAGAGTTCGCCAAA
13676781 TGGCGAATTC
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 2 0.13
17 13 0.87
ACGTcount: A:0.33, C:0.30, G:0.18, T:0.18
Consensus pattern (17 bp):
CCTAGAGTTCGCCAAAA
Found at i:13691402 original size:31 final size:31
Alignment explanation
Indices: 13691344--13691403 Score: 77
Period size: 31 Copynumber: 1.9 Consensus size: 31
13691334 GTTGAGCTTC
* * *
13691344 AATTTTTTAATTATAGTTTTAATTATATTAT
1 AATTTTTTAATTAAAATTGTAATTATATTAT
13691375 AATTTTTT-ATTAAAATTGTAATATATATT
1 AATTTTTTAATTAAAATTGTAAT-TATATT
13691404 TATTAAAATA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
30 11 0.44
31 14 0.56
ACGTcount: A:0.38, C:0.00, G:0.03, T:0.58
Consensus pattern (31 bp):
AATTTTTTAATTAAAATTGTAATTATATTAT
Found at i:13691826 original size:23 final size:23
Alignment explanation
Indices: 13691796--13691844 Score: 71
Period size: 23 Copynumber: 2.1 Consensus size: 23
13691786 TGGATTCAAA
*
13691796 TTTAAAAAAATTCCTTAAATTGT
1 TTTAAAAAAATTCCTTAAATTCT
**
13691819 TTTAAAAATTTTCCTTAAATTCT
1 TTTAAAAAAATTCCTTAAATTCT
13691842 TTT
1 TTT
13691845 TTAGTACTAT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.37, C:0.10, G:0.02, T:0.51
Consensus pattern (23 bp):
TTTAAAAAAATTCCTTAAATTCT
Found at i:13692838 original size:23 final size:23
Alignment explanation
Indices: 13692795--13692843 Score: 55
Period size: 23 Copynumber: 2.1 Consensus size: 23
13692785 TAAATTTTTT
* *
13692795 AAAGGTAAAAGAAATATTATTAA
1 AAAGGTAAAAGAAAAAATATTAA
*
13692818 AAAGG-AAAAGAAGAAAATATTGA
1 AAAGGTAAAAGAA-AAAATATTAA
13692841 AAA
1 AAA
13692844 TCAATAGAAA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
22 7 0.32
23 15 0.68
ACGTcount: A:0.65, C:0.00, G:0.16, T:0.18
Consensus pattern (23 bp):
AAAGGTAAAAGAAAAAATATTAA
Found at i:13696816 original size:2 final size:2
Alignment explanation
Indices: 13696805--13696840 Score: 65
Period size: 2 Copynumber: 18.5 Consensus size: 2
13696795 CTTAATAGAT
13696805 TA TA -A TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
13696841 GACTCCAAAA
Statistics
Matches: 33, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 32 0.97
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:13697231 original size:16 final size:16
Alignment explanation
Indices: 13697210--13697240 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
13697200 CATATTAGAG
13697210 CACATAAATTTGAAAC
1 CACATAAATTTGAAAC
*
13697226 CACATATATTTGAAA
1 CACATAAATTTGAAA
13697241 AAAATTTCAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.48, C:0.16, G:0.06, T:0.29
Consensus pattern (16 bp):
CACATAAATTTGAAAC
Found at i:13697444 original size:19 final size:19
Alignment explanation
Indices: 13697409--13697463 Score: 60
Period size: 19 Copynumber: 2.9 Consensus size: 19
13697399 TTATTTAAAA
*
13697409 TATAAAT-TTTGGAATTTT
1 TATAAATATTTTGAATTTT
13697427 TATAAATATTTTGAATTTT
1 TATAAATATTTTGAATTTT
*
13697446 CA-AAATTATTTTGTAATT
1 TATAAA-TATTTTG-AATT
13697464 ATTTTGTAAT
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
18 10 0.31
19 18 0.56
20 4 0.12
ACGTcount: A:0.36, C:0.02, G:0.07, T:0.55
Consensus pattern (19 bp):
TATAAATATTTTGAATTTT
Found at i:13697479 original size:9 final size:11
Alignment explanation
Indices: 13697449--13697474 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
13697439 GAATTTTCAA
13697449 AATTATTTTGT
1 AATTATTTTGT
13697460 AATTATTTTGT
1 AATTATTTTGT
13697471 AATT
1 AATT
13697475 TTTGTTGAGA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.31, C:0.00, G:0.08, T:0.62
Consensus pattern (11 bp):
AATTATTTTGT
Found at i:13699916 original size:24 final size:24
Alignment explanation
Indices: 13699889--13699971 Score: 78
Period size: 24 Copynumber: 3.3 Consensus size: 24
13699879 AAAAATACTC
13699889 TTTTATCATCATTTATTTTAAGTTT
1 TTTTAT-ATCATTTATTTTAAGTTT
*
13699914 TTTTATATTATTTATTTTAAGCTGTT
1 TTTTATATCATTTATTTTAAG-T-TT
** * *
13699940 TTACATATTATTTA-TTTAAATTT
1 TTTTATATCATTTATTTTAAGTTT
13699963 CTTTTATAT
1 -TTTTATAT
13699972 ATTGTTTATT
Statistics
Matches: 49, Mismatches: 6, Indels: 7
0.79 0.10 0.11
Matches are distributed among these distances:
23 2 0.04
24 21 0.43
25 12 0.24
26 14 0.29
ACGTcount: A:0.27, C:0.06, G:0.04, T:0.64
Consensus pattern (24 bp):
TTTTATATCATTTATTTTAAGTTT
Found at i:13699948 original size:26 final size:24
Alignment explanation
Indices: 13699899--13699956 Score: 80
Period size: 26 Copynumber: 2.3 Consensus size: 24
13699889 TTTTATCATC
**
13699899 ATTTATTTTAAGTTTTTTTATATT
1 ATTTATTTTAAGTTTTTACATATT
13699923 ATTTATTTTAAGCTGTTTTACATATT
1 ATTTATTTTAAG-T-TTTTACATATT
13699949 ATTTATTT
1 ATTTATTT
13699957 AAATTTCTTT
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
24 12 0.40
25 1 0.03
26 17 0.57
ACGTcount: A:0.26, C:0.03, G:0.05, T:0.66
Consensus pattern (24 bp):
ATTTATTTTAAGTTTTTACATATT
Found at i:13699967 original size:26 final size:26
Alignment explanation
Indices: 13699918--13699986 Score: 75
Period size: 26 Copynumber: 2.6 Consensus size: 26
13699908 AAGTTTTTTT
* *
13699918 ATATTATTTATTTTAAGCTGTTTTAC
1 ATATTATTTATTTAAAGCTCTTTTAC
** *
13699944 ATATTATTTATTTAAATTTCTTTTAT
1 ATATTATTTATTTAAAGCTCTTTTAC
*
13699970 ATATTGTTTATTGTAAA
1 ATATTATTTATT-TAAA
13699987 CTATTATATA
Statistics
Matches: 36, Mismatches: 6, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
26 32 0.89
27 4 0.11
ACGTcount: A:0.30, C:0.04, G:0.06, T:0.59
Consensus pattern (26 bp):
ATATTATTTATTTAAAGCTCTTTTAC
Found at i:13700000 original size:52 final size:50
Alignment explanation
Indices: 13699899--13700000 Score: 114
Period size: 52 Copynumber: 2.0 Consensus size: 50
13699889 TTTTATCATC
* * * * *
13699899 ATTTATTTTAAGTTTTTTTATATTATTTATTTTAAGCTGTTTTACATATT
1 ATTTATTTAAAGTTTTTTTATATTATTTATTGTAAACTATTATACATATT
* * *
13699949 ATTTATTTAAATTTCTTTTATATATTGTTTATTGTAAACTATTATATATATT
1 ATTTATTTAAAGTT-TTTT-TATATTATTTATTGTAAACTATTATACATATT
13700001 TCAAATTTTG
Statistics
Matches: 42, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
50 12 0.29
51 4 0.10
52 26 0.62
ACGTcount: A:0.29, C:0.04, G:0.05, T:0.62
Consensus pattern (50 bp):
ATTTATTTAAAGTTTTTTTATATTATTTATTGTAAACTATTATACATATT
Found at i:13700036 original size:21 final size:19
Alignment explanation
Indices: 13699990--13700037 Score: 51
Period size: 21 Copynumber: 2.3 Consensus size: 19
13699980 TTGTAAACTA
*
13699990 TTATATATATTTCAAATTT
1 TTATATATATTTAAAATTT
13700009 TGATATATATATTTAAAAATGTT
1 T--TATATATATTT-AAAAT-TT
13700032 TTATAT
1 TTATAT
13700038 TTTTTTAGAT
Statistics
Matches: 24, Mismatches: 1, Indels: 6
0.77 0.03 0.19
Matches are distributed among these distances:
19 1 0.04
21 16 0.67
22 4 0.17
23 3 0.12
ACGTcount: A:0.40, C:0.02, G:0.04, T:0.54
Consensus pattern (19 bp):
TTATATATATTTAAAATTT
Found at i:13700058 original size:24 final size:23
Alignment explanation
Indices: 13700030--13700092 Score: 65
Period size: 25 Copynumber: 2.7 Consensus size: 23
13700020 TTTAAAAATG
13700030 TTTTATATTTTTTTAGATTATTTA
1 TTTTATATTTTTTTAG-TTATTTA
* *
13700054 TTTTAAATTGTTTTATTGTTATTTA
1 TTTTATATT-TTTT-TAGTTATTTA
*
13700079 TTTT-TAGTTTTTTA
1 TTTTATATTTTTTTA
13700093 TATTTTGTTT
Statistics
Matches: 32, Mismatches: 5, Indels: 6
0.74 0.12 0.14
Matches are distributed among these distances:
22 1 0.03
23 4 0.12
24 10 0.31
25 15 0.47
26 2 0.06
ACGTcount: A:0.22, C:0.00, G:0.06, T:0.71
Consensus pattern (23 bp):
TTTTATATTTTTTTAGTTATTTA
Found at i:13700169 original size:17 final size:17
Alignment explanation
Indices: 13700147--13700180 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
13700137 CTTATAAATC
13700147 ATTTACTTTAAAGTATT
1 ATTTACTTTAAAGTATT
*
13700164 ATTTACTTTAAATTATT
1 ATTTACTTTAAAGTATT
13700181 TTATATATTA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.35, C:0.06, G:0.03, T:0.56
Consensus pattern (17 bp):
ATTTACTTTAAAGTATT
Found at i:13703602 original size:15 final size:14
Alignment explanation
Indices: 13703582--13703650 Score: 54
Period size: 13 Copynumber: 4.9 Consensus size: 14
13703572 TACTTCATTT
13703582 AAAAAAAAGAAAAAG
1 AAAAAAAAG-AAAAG
*
13703597 AAAAAAAAGGAAAG
1 AAAAAAAAGAAAAG
*
13703611 -AAAAAAGGAAAAGGG
1 AAAAAAAAGAAAA--G
**
13703626 AATGAAAAG-AAAG
1 AAAAAAAAGAAAAG
13703639 -AAAAAAAGAAAA
1 AAAAAAAAGAAAA
13703651 AGGAAAAGGA
Statistics
Matches: 42, Mismatches: 8, Indels: 10
0.70 0.13 0.17
Matches are distributed among these distances:
12 6 0.14
13 14 0.33
14 4 0.10
15 13 0.31
16 5 0.12
ACGTcount: A:0.78, C:0.00, G:0.20, T:0.01
Consensus pattern (14 bp):
AAAAAAAAGAAAAG
Found at i:13703633 original size:29 final size:28
Alignment explanation
Indices: 13703583--13703655 Score: 94
Period size: 28 Copynumber: 2.6 Consensus size: 28
13703573 ACTTCATTTA
**
13703583 AAAAAAAGAAAAA-GAAAAAAAAGGAAAG
1 AAAAAAAGAAAAAGGAATGAAAA-GAAAG
* *
13703611 AAAAAAGGAAAAGGGAATGAAAAGAAAG
1 AAAAAAAGAAAAAGGAATGAAAAGAAAG
13703639 AAAAAAAGAAAAAGGAA
1 AAAAAAAGAAAAAGGAA
13703656 AAGGAGAAGC
Statistics
Matches: 38, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
28 31 0.82
29 7 0.18
ACGTcount: A:0.77, C:0.00, G:0.22, T:0.01
Consensus pattern (28 bp):
AAAAAAAGAAAAAGGAATGAAAAGAAAG
Found at i:13704802 original size:143 final size:143
Alignment explanation
Indices: 13704533--13705072 Score: 746
Period size: 143 Copynumber: 3.8 Consensus size: 143
13704523 GATTGAGGTC
*
13704533 ATTATGGCAGATCTTATCTTCCTGAAGTTGCAGTGGAGCAGATTGAAGCCATCAGCCTTATCTCC
1 ATTATGGCAGATCTTATCTTCCTGAAGTTGCAGTGGAGCAGATTGAAGCCACCAGCCTTATCTCC
* * * * * *
13704598 CTGAAGTTACAGCAAAGCAGACTGAAGACAGCGAATCTTAT-TTCCCTGGCGTTGCAATGGAACA
66 CTGAAGTTGCAGCGAAGCAGACTAAAGACAGCGAATCTTATCTTCCCT-GCATTACAGTGGAACA
*
13704662 GATTAAAGCTACAA
130 AATTAAAGCTACAA
* *
13704676 ATTATGACGGATCTTATCTTCCTGAAGTTGCAGTGGAGCAGATTGAAGCCACCAGCCTTATC-CC
1 ATTATGGCAGATCTTATCTTCCTGAAGTTGCAGTGGAGCAGATTGAAGCCACCAGCCTTATCTCC
* * * * *
13704740 TCTAAAGTTGTAACGAAGCAGACTAAAGATAGTGAATCTTAT-TTCCCTAGCATTACAGTGGAAC
66 -CTGAAGTTGCAGCGAAGCAGACTAAAGACAGCGAATCTTATCTTCCCT-GCATTACAGTGGAAC
13704804 AAATTAAAGCTACAA
129 AAATTAAAGCTACAA
* * * *
13704819 ATTATGGCGGATCTTATCTTCCTAAAGTTGCAGTGGAGCAGATTGAAGCCACCAGCCTTGTCCCC
1 ATTATGGCAGATCTTATCTTCCTGAAGTTGCAGTGGAGCAGATTGAAGCCACCAGCCTTATCTCC
* * * * *
13704884 CTGAAGTTGCAGCGGAGCAGACTGAAGACAGCGAATCTTATCTT-CCTGAAGTTACAGTAGAGCA
66 CTGAAGTTGCAGCGAAGCAGACTAAAGACAGCGAATCTTATCTTCCCTGCA-TTACAGTGGAACA
13704948 AATTAAAGCTACAA
130 AATTAAAGCTACAA
* * *
13704962 ATTATGGCAGATCTTATCTTCCTGAAGTTGCAGTGGAGCTGATTGAAGCCACCAGCCTTGTCTAC
1 ATTATGGCAGATCTTATCTTCCTGAAGTTGCAGTGGAGCAGATTGAAGCCACCAGCCTTATCTCC
* * *
13705027 CTGAAGTTGCAGTGGAGCAGACTAAAGACAGTGAATCTTATCTTCC
66 CTGAAGTTGCAGCGAAGCAGACTAAAGACAGCGAATCTTATCTTCC
13705073 TAAAGTTGCA
Statistics
Matches: 355, Mismatches: 37, Indels: 9
0.89 0.09 0.02
Matches are distributed among these distances:
142 4 0.01
143 346 0.97
144 5 0.01
ACGTcount: A:0.30, C:0.21, G:0.22, T:0.26
Consensus pattern (143 bp):
ATTATGGCAGATCTTATCTTCCTGAAGTTGCAGTGGAGCAGATTGAAGCCACCAGCCTTATCTCC
CTGAAGTTGCAGCGAAGCAGACTAAAGACAGCGAATCTTATCTTCCCTGCATTACAGTGGAACAA
ATTAAAGCTACAA
Found at i:13705120 original size:232 final size:232
Alignment explanation
Indices: 13704829--13705303 Score: 724
Period size: 232 Copynumber: 2.1 Consensus size: 232
13704819 ATTATGGCGG
* *
13704829 ATCTTATCTTCCTAAAGTTGCAGTGGAGCAGATTGAAGCCACCAGCCTTGTCCCCCTGAAGTTGC
1 ATCTTATCTTCCTAAAGTTGCAGCGGAGCAGATTGAAGCCACCAGCCTTATCCCCCTGAAGTTGC
* *
13704894 AGCGGAGCAGACTGAAGACAGCG-AATCTTATCTTCCTGAAGTTACAGTAGAGCAA-ATTAAAGC
66 AGCGGAGCAAACTGAAGACAG-GAAATATTATCTTCCTGAAGTTACAGTAGAG-AAGATTAAAGC
* *
13704957 TACAAATTATGGCAGATCTTATCTTCCTGAAGTTGCAGTGGAGCTGATTGAAGCCACCAGCCTTG
129 TACAAATTATGGCAGATCTTATCTTCCTGAAGTTACAGTGGAGCTGATTGAAGCCACCAGCCTTA
* **
13705022 TCTAC-CTGAAGTTGCAGTGGAGCAGACTAAAGACAGTGA
194 TCT-CTCTGAAGTTGCAGCGGAGCAGACTAAAGACAACGA
* * *
13705061 ATCTTATCTTCCTAAAGTTGCAGCGGAGGAGATTGAAGCCATCAGCCTTATCTCCCTGAAGTTGC
1 ATCTTATCTTCCTAAAGTTGCAGCGGAGCAGATTGAAGCCACCAGCCTTATCCCCCTGAAGTTGC
* * *
13705126 AGCGGAGCAAACTGAAGACAGGAAATATTATCTTCTTGAAGTTGCAGTGGAGAAGATTAAAGCTA
66 AGCGGAGCAAACTGAAGACAGGAAATATTATCTTCCTGAAGTTACAGTAGAGAAGATTAAAGCTA
* *
13705191 CAAATTATGGCAGATCTTATCTTCCTGAAGTTATAGTGGAGTTGATTGAAGCCACCAGCCTTATC
131 CAAATTATGGCAGATCTTATCTTCCTGAAGTTACAGTGGAGCTGATTGAAGCCACCAGCCTTATC
* *
13705256 TCTCTGAAGTTGCAGCGGAGTAGACTGAAGACAACGA
196 TCTCTGAAGTTGCAGCGGAGCAGACTAAAGACAACGA
13705293 ATCTTAT-TTCC
1 ATCTTATCTTCC
13705304 CTGCCATTGT
Statistics
Matches: 221, Mismatches: 19, Indels: 7
0.89 0.08 0.03
Matches are distributed among these distances:
231 8 0.04
232 213 0.96
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.27
Consensus pattern (232 bp):
ATCTTATCTTCCTAAAGTTGCAGCGGAGCAGATTGAAGCCACCAGCCTTATCCCCCTGAAGTTGC
AGCGGAGCAAACTGAAGACAGGAAATATTATCTTCCTGAAGTTACAGTAGAGAAGATTAAAGCTA
CAAATTATGGCAGATCTTATCTTCCTGAAGTTACAGTGGAGCTGATTGAAGCCACCAGCCTTATC
TCTCTGAAGTTGCAGCGGAGCAGACTAAAGACAACGA
Found at i:13705123 original size:89 final size:89
Alignment explanation
Indices: 13704972--13706150 Score: 535
Period size: 89 Copynumber: 12.8 Consensus size: 89
13704962 ATTATGGCAG
* * *
13704972 ATCTTATCTTCCTGAAGTTGCAGTGGAGCTGATTGAAGCCACCAGCCTTGTCTACCTGAAGTTGC
1 ATCTTATCTTCCTGAAGTTGCAGTGGAGCAGATTGAAGCCACCAGCCTTATCTCCCTGAAGTTGC
* *
13705037 AGTGGAGCAGACTAAAGACAGTGA
66 AGTGGAGCAGACTGAAGACAGCGA
* * * *
13705061 ATCTTATCTTCCTAAAGTTGCAGCGGAGGAGATTGAAGCCATCAGCCTTATCTCCCTGAAGTTGC
1 ATCTTATCTTCCTGAAGTTGCAGTGGAGCAGATTGAAGCCACCAGCCTTATCTCCCTGAAGTTGC
* *
13705126 AGCGGAGCAAACTGAAGACAG-GAA
66 AGTGGAGCAGACTGAAGACAGCG-A
* * * * * * *
13705150 ATATTATCTTCTTGAAGTTGCAGTGGAGAAGATTAAAGCTACAAATTATGGCAGATCTTATCTTC
1 ATCTTATCTTCCTGAAGTTGCAGTGGAGCAGATTGAAGC--C-----A--CCAG-CCTTATCTCC
** ** * * *
13705215 CTGAAGTTATAGTGGAGTTGATTGAAGCCA-CCA
56 CTGAAGTTGCAGTGGAGCAGACTGAAGACAGCGA
** * * * * * ** * *
13705248 GCCTTATC-TCTCTGAAGTTGCAGCGGAGTAGACTGAAGACAACGAATCTTATTTCCCTGCCA-T
1 ATCTTATCTTC-CTGAAGTTGCAGTGGAGCAGATTGAAG-CCACCAGCCTTATCTCCCTG-AAGT
* * * * *
13705311 TGTAGTGGAACAGGTTAAAACT-ACAAATTAGGGTA
63 TGCAGTGGAGCA-G-----ACTGA-AGA-CAGCG-A
* * *
13705346 GATCTTATCTTCCTGAAATTGCAGTGGAGTAGATTAAAGCCACCAGCCTTATCTCCCTGAAGTTG
1 -ATCTTATCTTCCTGAAGTTGCAGTGGAGCAGATTGAAGCCACCAGCCTTATCTCCCTGAAGTTG
*
13705411 CAGCGGAGCAGACTGAAGACAGCGA
65 CAGTGGAGCAGACTGAAGACAGCGA
** * * ** *
13705436 ATCTTAT-TTCCCTGGCGTTGCAGTGGAACAGATTAAAGCTACAAATTATGGCGGATCTTATCTT
1 ATCTTATCTT-CCTGAAGTTGCAGTGGAGCAGATTGAAGC--C--ACCA--GC----CTTATCTC
* * * * * *
13705500 CCTAAAGTTGTAGTGGAGAAGATTGAAGCCA-CCA
55 CCTGAAGTTGCAGTGGAGCAGACTGAAGACAGCGA
** * * * * ** ** * **
13705534 GCCTTATCTCCCT-AATGTTGCAGCGGAGCAGACTGAAGACAGTGAATCTTATTTCCCTGGCGTT
1 ATCTTATCTTCCTGAA-GTTGCAGTGGAGCAGATTGAAGCCA-CCAGCCTTATCTCCCTGAAGTT
* * * *
13705598 GCAGTGGAACAAATTAAAGCTACAAATTATGGCTG-
64 GCAGTGGAGCAGACTGAAG--AC-----A--GC-GA
* * * * *
13705633 ATCTTATCTTCTTGAAGTTTCAGTGGAGCAGATTGAAGCAACTAGCTTTATCTCCCTGAAGTTGC
1 ATCTTATCTTCCTGAAGTTGCAGTGGAGCAGATTGAAGCCACCAGCCTTATCTCCCTGAAGTTGC
* *
13705698 AGCGAAGCAGACTGAAGACAGCGA
66 AGTGGAGCAGACTGAAGACAGCGA
* * * * * *
13705722 ATCTTATCTTTCTGAAGTTGCAATAGAGGAGATTGAAGCTACCAGCCTTATCTCCTTGAAGTTGC
1 ATCTTATCTTCCTGAAGTTGCAGTGGAGCAGATTGAAGCCACCAGCCTTATCTCCCTGAAGTTGC
* *
13705787 AGCGGA-CTAGACTGAAGACAGTGA
66 AGTGGAGC-AGACTGAAGACAGCGA
* * * * *
13705811 ATCTTAT-TTCCCT-AGCGTTGCAATGGAACAGATTGAAGCCACCAACCTTATCTCCCTAAAGTT
1 ATCTTATCTT-CCTGA-AGTTGCAGTGGAGCAGATTGAAGCCACCAGCCTTATCTCCCTGAAGTT
*
13705874 GCAGCGGAGCAGACTGAAGACAGCGA
64 GCAGTGGAGCAGACTGAAGACAGCGA
* * * ** * *
13705900 ATCTTATTTTTCTGAAGTTGCAGTGGAGTAGATTGAAATCACCAGCCTTATCTCCTTGAAGTTTC
1 ATCTTATCTTCCTGAAGTTGCAGTGGAGCAGATTGAAGCCACCAGCCTTATCTCCCTGAAGTTGC
* * * *
13705965 AGTGAAGTAGA-TCAA-AGCTA-CAA
66 AGTGGAGCAGACTGAAGA-C-AGCGA
* ** * *
13705988 ATCTGT-TC-TCTCTGAAATT--ATGTTGGAGCAGATCAAAGCCACAATCCTTATCTCCCTGAAG
1 ATCT-TATCTTC-CTGAAGTTGCA-G-TGGAGCAGATTGAAGCCACCAGCCTTATCTCCCTGAAG
* * * * * *
13706049 TTGTAGTGGAGCAGGA-TAAAAATATACAA
62 TTGCAGTGGAGCA-GACTGAAGACA-GCGA
* * * * *** ** *
13706078 ACCTTATCTCCCTAAAGTTGCAGTGGAGCAGGTTGAAATTACCAATTCTTATCTCCTTGAAGTTG
1 ATCTTATCTTCCTGAAGTTGCAGTGGAGCAGATTGAAGCCACC-AGCCTTATCTCCCTGAAGTTG
13706143 CAGTGGAG
65 CAGTGGAG
13706151 TAGATCGAAT
Statistics
Matches: 810, Mismatches: 203, Indels: 152
0.70 0.17 0.13
Matches are distributed among these distances:
86 1 0.00
87 3 0.00
88 66 0.08
89 401 0.50
90 36 0.04
91 35 0.04
92 7 0.01
93 3 0.00
94 2 0.00
95 7 0.01
96 6 0.01
97 4 0.00
98 112 0.14
99 123 0.15
100 4 0.00
ACGTcount: A:0.30, C:0.20, G:0.23, T:0.28
Consensus pattern (89 bp):
ATCTTATCTTCCTGAAGTTGCAGTGGAGCAGATTGAAGCCACCAGCCTTATCTCCCTGAAGTTGC
AGTGGAGCAGACTGAAGACAGCGA
Found at i:13705126 original size:44 final size:44
Alignment explanation
Indices: 13704974--13705962 Score: 202
Period size: 44 Copynumber: 21.4 Consensus size: 44
13704964 TATGGCAGAT
* * *
13704974 CTTATCTTCCTGAAGTTGCAGTGGAGCTGATTGAAGCCACCAGC
1 CTTATCTTCCTGAAGTTGCAGCGGAGCAGATTGAAGCCATCAGC
* * * * * * * **
13705018 CTTGTCTACCTGAAGTTGCAGTGGAGCAGACTAAAGACAGTGAAT
1 CTTATCTTCCTGAAGTTGCAGCGGAGCAGATTGAAGCCA-TCAGC
* *
13705063 CTTATCTTCCTAAAGTTGCAGCGGAGGAGATTGAAGCCATCAGC
1 CTTATCTTCCTGAAGTTGCAGCGGAGCAGATTGAAGCCATCAGC
* * * * ** **
13705107 CTTATCTCCCTGAAGTTGCAGCGGAGCAAACTGAAGACAGGAAAT
1 CTTATCTTCCTGAAGTTGCAGCGGAGCAGATTGAAGCCA-TCAGC
* * * * * *
13705152 ATTATCTTCTTGAAGTTGCAGTGGAGAAGATTAAAGCTACAAATTATGGCAGAT
1 CTTATCTTCCTGAAGTTGCAGCGGAGCAGATTGAAGC--C-----AT--CAG-C
** * ** *
13705206 CTTATCTTCCTGAAGTTATAGTGGAGTTGATTGAAGCCACCAGC
1 CTTATCTTCCTGAAGTTGCAGCGGAGCAGATTGAAGCCATCAGC
* * * * **
13705250 CTTATC-TCTCTGAAGTTGCAGCGGAGTAGACTGAAGACAACGAAT
1 CTTATCTTC-CTGAAGTTGCAGCGGAGCAGATTGAAGCCATC-AGC
* * * * * * * * *
13705295 CTTAT-TTCCCTGCCA-TTGTAGTGGAACAGGTTAAAACTACAAATTAGGGTAGAT
1 CTTATCTT-CCTG-AAGTTGCAGCGGAGCAGATTGAAGC--C--A-T----CAG-C
* * * * *
13705349 CTTATCTTCCTGAAATTGCAGTGGAGTAGATTAAAGCCACCAGC
1 CTTATCTTCCTGAAGTTGCAGCGGAGCAGATTGAAGCCATCAGC
* * * * **
13705393 CTTATCTCCCTGAAGTTGCAGCGGAGCAGACTGAAGACAGCGAAT
1 CTTATCTTCCTGAAGTTGCAGCGGAGCAGATTGAAGCCATC-AGC
** * * * *
13705438 CTTAT-TTCCCTGGCGTTGCAGTGGAACAGATTAAAGCTACAAATTATGGC
1 CTTATCTT-CCTGAAGTTGCAGCGGAGCAGATTGAAGC--C--ATCA--GC
* * * * *
13705488 GGATCTTATCTTCCTAAAGTTGTAGTGGAGAAGATTGAAGCCACCAGC
1 ----CTTATCTTCCTGAAGTTGCAGCGGAGCAGATTGAAGCCATCAGC
* * * * **
13705536 CTTATCTCCCT-AATGTTGCAGCGGAGCAGACTGAAGACAGTGAAT
1 CTTATCTTCCTGAA-GTTGCAGCGGAGCAGATTGAAGCCA-TCAGC
** * * * * *
13705581 CTTAT-TTCCCTGGCGTTGCAGTGGAACAAATTAAAGCTACAAATTATGGC
1 CTTATCTT-CCTGAAGTTGCAGCGGAGCAGATTGAAGC--C--ATCA--GC
* * * *
13705631 TGATCTTATCTTCTTGAAGTTTCAGTGGAGCAGATTGAAG-CAACTAGC
1 ----CTTATCTTCCTGAAGTTGCAGCGGAGCAGATTGAAGCCATC-AGC
* * * * * * **
13705679 TTTATCTCCCTGAAGTTGCAGCGAAGCAGACTGAAGACAGCGAAT
1 CTTATCTTCCTGAAGTTGCAGCGGAGCAGATTGAAGCCATC-AGC
* *** * * *
13705724 CTTATCTTTCTGAAGTTGCAATAGAGGAGATTGAAGCTACCAGC
1 CTTATCTTCCTGAAGTTGCAGCGGAGCAGATTGAAGCCATCAGC
* * * **
13705768 CTTATC-TCCTTGAAGTTGCAGCGGA-CTAGACTGAAGACAGTGAAT
1 CTTATCTTCC-TGAAGTTGCAGCGGAGC-AGATTGAAGCCA-TCAGC
* ** * * *
13705813 CTTAT-TTCCCT-AGCGTTGCAATGGAACAGATTGAAGCCACCAAC
1 CTTATCTT-CCTGA-AGTTGCAGCGGAGCAGATTGAAGCCATCAGC
* * * * * **
13705857 CTTATCTCCCTAAAGTTGCAGCGGAGCAGACTGAAGACAGCGAAT
1 CTTATCTTCCTGAAGTTGCAGCGGAGCAGATTGAAGCCATC-AGC
* * * * ** *
13705902 CTTATTTTTCTGAAGTTGCAGTGGAGTAGATTGAAATCACCAGC
1 CTTATCTTCCTGAAGTTGCAGCGGAGCAGATTGAAGCCATCAGC
13705946 CTTATC-TCCTTGAAGTT
1 CTTATCTTCC-TGAAGTT
13705963 TCAGTGAAGT
Statistics
Matches: 662, Mismatches: 213, Indels: 140
0.65 0.21 0.14
Matches are distributed among these distances:
43 8 0.01
44 266 0.40
45 238 0.36
46 5 0.01
47 5 0.01
48 7 0.01
49 4 0.01
50 4 0.01
51 1 0.00
52 4 0.01
53 3 0.00
54 111 0.17
55 6 0.01
ACGTcount: A:0.29, C:0.20, G:0.23, T:0.27
Consensus pattern (44 bp):
CTTATCTTCCTGAAGTTGCAGCGGAGCAGATTGAAGCCATCAGC
Found at i:13705240 original size:375 final size:374
Alignment explanation
Indices: 13704686--13705446 Score: 989
Period size: 375 Copynumber: 2.0 Consensus size: 374
13704676 ATTATGACGG
* * *
13704686 ATCTTATCTTCCTGAAGTTGCAGTGGAGCAGATTGAAGCCACCAGCCTTATCCCTCTAAAGTTGT
1 ATCTTATCTTCCTAAAGTTGCAGCGGAGCAGATTGAAGCCACCAGCCTTATCCCTCTAAAGTTGC
* * * *
13704751 AACGAAGCAGACTAAAGATAGTGAATCTTATTTCCCTAGCATTACAGTGGAACAAATTAAAGCTA
66 AACGAAGCAAACTAAAGACAGTGAATATTATTT-CCTAGAATTACAGTGGAACAAATTAAAGCTA
* * *
13704816 CAAATTATGGCGGATCTTATCTTCCTAAAGTTGCAGTGGAGCAGATTGAAGCCACCAGCCTTGTC
130 CAAATTATGGCAGATCTTATCTTCCTAAAGTTACAGTGGAGCAGATTGAAGCCACCAGCCTTATC
*
13704881 CCCCTGAAGTTGCAGCGGAGCAGACTGAAGACAGCGAATCTTATCTT-CCTG-AAGTTACAGTAG
195 CCCCTGAAGTTGCAGCGGAGCAGACTGAAGACAACGAATCTTAT-TTCCCTGCAA-TTACAGTAG
* * * * *
13704944 AGCAAATTAAAGCTACAAATTATGGCAGATCTTATCTTCCTGAAGTTGCAGTGGAGCT-GATTGA
258 AACAAATTAAAACTACAAATTAGGGCAGATCTTATCTTCCTGAAATTGCAGTGGAG-TAGATTAA
* * *
13705008 AGCCACCAGCCTTGTCTACCTGAAGTTGCAGTGGAGCAGACTAAAGACAGTGA
322 AGCCACCAGCCTTATCTACCTGAAGTTGCAGCGGAGCAGACTAAAGACAGCGA
* * *
13705061 ATCTTATCTTCCTAAAGTTGCAGCGGAGGAGATTGAAGCCATCAGCCTTATCTCC-CTGAAGTTG
1 ATCTTATCTTCCTAAAGTTGCAGCGGAGCAGATTGAAGCCACCAGCCTTATC-CCTCTAAAGTTG
* * * * * *
13705125 CAGCGGAGCAAACTGAAGACAG-GAAATATTATCTT-CTTGAAGTTGCAGTGGAGA-AGATTAAA
65 CAACGAAGCAAACTAAAGACAGTG-AATATTAT-TTCCTAGAA-TTACAGTGGA-ACAAATTAAA
* * **
13705187 GCTACAAATTATGGCAGATCTTATCTTCCTGAAGTTATAGTGGAGTTGATTGAAGCCACCAGCCT
126 GCTACAAATTATGGCAGATCTTATCTTCCTAAAGTTACAGTGGAGCAGATTGAAGCCACCAGCCT
* * * * **
13705252 TATCTCTCTGAAGTTGCAGCGGAGTAGACTGAAGACAACGAATCTTATTTCCCTGCCATTGTAGT
191 TATCCCCCTGAAGTTGCAGCGGAGCAGACTGAAGACAACGAATCTTATTTCCCTGCAATTACAGT
* ** *
13705317 GGAACAGGTTAAAACTACAAATTAGGGTAGATCTTATCTTCCTGAAATTGCAGTGGAGTAGATTA
256 AGAACAAATTAAAACTACAAATTAGGGCAGATCTTATCTTCCTGAAATTGCAGTGGAGTAGATTA
* *
13705382 AAGCCACCAGCCTTATCTCCCTGAAGTTGCAGCGGAGCAGACTGAAGACAGCGA
321 AAGCCACCAGCCTTATCTACCTGAAGTTGCAGCGGAGCAGACTAAAGACAGCGA
13705436 ATCTTAT-TTCC
1 ATCTTATCTTCC
13705447 CTGGCGTTGC
Statistics
Matches: 334, Mismatches: 44, Indels: 17
0.85 0.11 0.04
Matches are distributed among these distances:
374 12 0.04
375 316 0.95
376 6 0.02
ACGTcount: A:0.30, C:0.21, G:0.22, T:0.27
Consensus pattern (374 bp):
ATCTTATCTTCCTAAAGTTGCAGCGGAGCAGATTGAAGCCACCAGCCTTATCCCTCTAAAGTTGC
AACGAAGCAAACTAAAGACAGTGAATATTATTTCCTAGAATTACAGTGGAACAAATTAAAGCTAC
AAATTATGGCAGATCTTATCTTCCTAAAGTTACAGTGGAGCAGATTGAAGCCACCAGCCTTATCC
CCCTGAAGTTGCAGCGGAGCAGACTGAAGACAACGAATCTTATTTCCCTGCAATTACAGTAGAAC
AAATTAAAACTACAAATTAGGGCAGATCTTATCTTCCTGAAATTGCAGTGGAGTAGATTAAAGCC
ACCAGCCTTATCTACCTGAAGTTGCAGCGGAGCAGACTAAAGACAGCGA
Found at i:13705319 original size:143 final size:143
Alignment explanation
Indices: 13705061--13705728 Score: 907
Period size: 143 Copynumber: 4.7 Consensus size: 143
13705051 AAGACAGTGA
* * * * *
13705061 ATCTTATCTTCCTAAAGTTGCAGCGGAGGAGATTGAAGCCATCAGCCTTATCTCCCTGAAGTTGC
1 ATCTTATCTTCCTGAAGTTGTAGTGGAGTAGATTGAAGCCACCAGCCTTATCTCCCTGAAGTTGC
* * * *
13705126 AGCGGAGCAAACTGAAGACAG-GAAATATTATCTT--CTTGAAGTTGCAGTGGAGA-AGATTAAA
66 AGCGGAGCAGACTGAAGACAGCG-AATCTTAT-TTCCCTGGCA-TTGCAGTGGA-ACAGATTAAA
13705187 GCTACAAATTATGGCAG
127 GCTACAAATTATGGCAG
* * *
13705204 ATCTTATCTTCCTGAAGTTATAGTGGAGTTGATTGAAGCCACCAGCCTTATCTCTCTGAAGTTGC
1 ATCTTATCTTCCTGAAGTTGTAGTGGAGTAGATTGAAGCCACCAGCCTTATCTCCCTGAAGTTGC
* * * * * *
13705269 AGCGGAGTAGACTGAAGACAACGAATCTTATTTCCCTGCCATTGTAGTGGAACAGGTTAAAACTA
66 AGCGGAGCAGACTGAAGACAGCGAATCTTATTTCCCTGGCATTGCAGTGGAACAGATTAAAGCTA
* *
13705334 CAAATTAGGGTAG
131 CAAATTATGGCAG
* * *
13705347 ATCTTATCTTCCTGAAATTGCAGTGGAGTAGATTAAAGCCACCAGCCTTATCTCCCTGAAGTTGC
1 ATCTTATCTTCCTGAAGTTGTAGTGGAGTAGATTGAAGCCACCAGCCTTATCTCCCTGAAGTTGC
*
13705412 AGCGGAGCAGACTGAAGACAGCGAATCTTATTTCCCTGGCGTTGCAGTGGAACAGATTAAAGCTA
66 AGCGGAGCAGACTGAAGACAGCGAATCTTATTTCCCTGGCATTGCAGTGGAACAGATTAAAGCTA
*
13705477 CAAATTATGGCGG
131 CAAATTATGGCAG
* *
13705490 ATCTTATCTTCCTAAAGTTGTAGTGGAGAAGATTGAAGCCACCAGCCTTATCTCCCT-AATGTTG
1 ATCTTATCTTCCTGAAGTTGTAGTGGAGTAGATTGAAGCCACCAGCCTTATCTCCCTGAA-GTTG
* * *
13705554 CAGCGGAGCAGACTGAAGACAGTGAATCTTATTTCCCTGGCGTTGCAGTGGAACAAATTAAAGCT
65 CAGCGGAGCAGACTGAAGACAGCGAATCTTATTTCCCTGGCATTGCAGTGGAACAGATTAAAGCT
*
13705619 ACAAATTATGGCTG
130 ACAAATTATGGCAG
* * * * *
13705633 ATCTTATCTTCTTGAAGTT-TCAGTGGAGCAGATTGAAGCAACTAGCTTTATCTCCCTGAAGTTG
1 ATCTTATCTTCCTGAAGTTGT-AGTGGAGTAGATTGAAGCCACCAGCCTTATCTCCCTGAAGTTG
*
13705697 CAGCGAAGCAGACTGAAGACAGCGAATCTTAT
65 CAGCGGAGCAGACTGAAGACAGCGAATCTTAT
13705729 CTTTCTGAAG
Statistics
Matches: 466, Mismatches: 52, Indels: 14
0.88 0.10 0.03
Matches are distributed among these distances:
142 6 0.01
143 454 0.97
144 6 0.01
ACGTcount: A:0.30, C:0.20, G:0.23, T:0.28
Consensus pattern (143 bp):
ATCTTATCTTCCTGAAGTTGTAGTGGAGTAGATTGAAGCCACCAGCCTTATCTCCCTGAAGTTGC
AGCGGAGCAGACTGAAGACAGCGAATCTTATTTCCCTGGCATTGCAGTGGAACAGATTAAAGCTA
CAAATTATGGCAG
Found at i:13705601 original size:518 final size:518
Alignment explanation
Indices: 13704543--13705589 Score: 1480
Period size: 518 Copynumber: 2.0 Consensus size: 518
13704533 ATTATGGCAG
* *
13704543 ATCTTATCTTCCTGAAGTTGCAGTGGAGCAGATTGAAGCCATCAGCCTTATCTCCCTGAAGTTAC
1 ATCTTATCTTCCTAAAGTTGCAGCGGAGCAGATTGAAGCCATCAGCCTTATCTCCCTGAAGTTAC
* * **
13704608 AGCAAAGCAGACTGAAGACAGCGAATCTTATTTCCCTGGCGTTGCAATGGAACAGATTAAAGCTA
66 AGCAAAGCAAACTGAAGACAGCGAATATTATTTCCCTGAAGTTGCAATGGAACAGATTAAAGCTA
* *
13704673 CAAATTATGACGGATCTTATCTTCCTGAAGTTGCAGTGGAGCAGATTGAAGCCACCAGCCTTATC
131 CAAATTATGACAGATCTTATCTTCCTGAAGTTACAGTGGAGCAGATTGAAGCCACCAGCCTTATC
* * **
13704738 CCTCTAAAGTTGTAACGAAGCAGACTAAAGATAGTGAATCTTATTTCCCTAGCATTACAGTGGAA
196 CCTCTAAAGTTGCAACGAAGCAGACTAAAGACAACGAATCTTATTTCCCTAGCATTACAGTGGAA
* * * *
13704803 CAAATTAAAGCTACAAATTATGGCGGATCTTATCTTCCTAAAGTTGCAGTGGAGCAGATTGAAGC
261 CAAATTAAAACTACAAATTAGGGCAGATCTTATCTTCCTAAAGTTGCAGTGGAGCAGATTAAAGC
*
13704868 CACCAGCCTTGTCCCCCTGAAGTTGCAGCGGAGCAGACTGAAGACAGCGAATCTTATCTTCCTGA
326 CACCAGCCTTATCCCCCTGAAGTTGCAGCGGAGCAGACTGAAGACAGCGAATCTTATCTTCCTGA
* *
13704933 AGTTACAGTAGAGCAAATTAAAGCTACAAATTATGGCAGATCTTATCTTCCTGAAGTTGCAGTGG
391 AGTTACAGTAGAACAAATTAAAGCTACAAATTATGGCAGATCTTATCTTCCTAAAGTTGCAGTGG
** * *
13704998 AGCTGATTGAAGCCACCAGCCTTGTCTACCTGAAGTTGCAGTGGAGCAGACTAAAGACAGTGA
456 AGAAGATTGAAGCCACCAGCCTTATCTACCTGAAGTTGCAGCGGAGCAGACTAAAGACAGTGA
* *
13705061 ATCTTATCTTCCTAAAGTTGCAGCGGAGGAGATTGAAGCCATCAGCCTTATCTCCCTGAAGTTGC
1 ATCTTATCTTCCTAAAGTTGCAGCGGAGCAGATTGAAGCCATCAGCCTTATCTCCCTGAAGTTAC
** * *
13705126 AGCGGAGCAAACTGAAGACAG-GAAATATTATCTT-CTTGAAGTTGCAGTGGAGA-AGATTAAAG
66 AGCAAAGCAAACTGAAGACAGCG-AATATTAT-TTCCCTGAAGTTGCAATGGA-ACAGATTAAAG
* * **
13705188 CTACAAATTATGGCAGATCTTATCTTCCTGAAGTTATAGTGGAGTTGATTGAAGCCACCAGCCTT
128 CTACAAATTATGACAGATCTTATCTTCCTGAAGTTACAGTGGAGCAGATTGAAGCCACCAGCCTT
* * * * * * **
13705253 ATCTCTCTGAAGTTGCAGCGGAGTAGACTGAAGACAACGAATCTTATTTCCCT-GCCATTGTAGT
193 ATCCCTCTAAAGTTGCAACGAAGCAGACTAAAGACAACGAATCTTATTTCCCTAG-CATTACAGT
** * *
13705317 GGAACAGGTTAAAACTACAAATTAGGGTAGATCTTATCTTCCTGAAA-TTGCAGTGGAGTAGATT
257 GGAACAAATTAAAACTACAAATTAGGGCAGATCTTATCTTCCT-AAAGTTGCAGTGGAGCAGATT
*
13705381 AAAGCCACCAGCCTTATCTCCCTGAAGTTGCAGCGGAGCAGACTGAAGACAGCGAATCTTAT-TT
321 AAAGCCACCAGCCTTATCCCCCTGAAGTTGCAGCGGAGCAGACTGAAGACAGCGAATCTTATCTT
** * * * *
13705445 CCCTGGCGTTGCAGTGGAACAGATTAAAGCTACAAATTATGGCGGATCTTATCTTCCTAAAGTTG
386 -CCTGAAGTTACAGTAGAACAAATTAAAGCTACAAATTATGGCAGATCTTATCTTCCTAAAGTTG
* * *
13705510 TAGTGGAGAAGATTGAAGCCACCAGCCTTATCTCCCT-AATGTTGCAGCGGAGCAGACTGAAGAC
450 CAGTGGAGAAGATTGAAGCCACCAGCCTTATCTACCTGAA-GTTGCAGCGGAGCAGACTAAAGAC
13705574 AGTGA
514 AGTGA
13705579 ATCTTAT-TTCC
1 ATCTTATCTTCC
13705590 CTGGCGTTGC
Statistics
Matches: 467, Mismatches: 55, Indels: 15
0.87 0.10 0.03
Matches are distributed among these distances:
517 10 0.02
518 451 0.97
519 6 0.01
ACGTcount: A:0.30, C:0.21, G:0.22, T:0.27
Consensus pattern (518 bp):
ATCTTATCTTCCTAAAGTTGCAGCGGAGCAGATTGAAGCCATCAGCCTTATCTCCCTGAAGTTAC
AGCAAAGCAAACTGAAGACAGCGAATATTATTTCCCTGAAGTTGCAATGGAACAGATTAAAGCTA
CAAATTATGACAGATCTTATCTTCCTGAAGTTACAGTGGAGCAGATTGAAGCCACCAGCCTTATC
CCTCTAAAGTTGCAACGAAGCAGACTAAAGACAACGAATCTTATTTCCCTAGCATTACAGTGGAA
CAAATTAAAACTACAAATTAGGGCAGATCTTATCTTCCTAAAGTTGCAGTGGAGCAGATTAAAGC
CACCAGCCTTATCCCCCTGAAGTTGCAGCGGAGCAGACTGAAGACAGCGAATCTTATCTTCCTGA
AGTTACAGTAGAACAAATTAAAGCTACAAATTATGGCAGATCTTATCTTCCTAAAGTTGCAGTGG
AGAAGATTGAAGCCACCAGCCTTATCTACCTGAAGTTGCAGCGGAGCAGACTAAAGACAGTGA
Found at i:13705728 original size:518 final size:513
Alignment explanation
Indices: 13704543--13705840 Score: 1368
Period size: 518 Copynumber: 2.5 Consensus size: 513
13704533 ATTATGGCAG
* * * * * *
13704543 ATCTTATCTTCCTGAAGTTGCAGTGGAGCAGATTGAAGCCATCAGCCTTATCTCCCTGAAGTTAC
1 ATCTTATCTTCCTAAAGTTGCAGCGGAACAAATTAAAGCCATCAGCCTTATCTCCCTGAAGTTGC
** * * * ** * *
13704608 AGCAAAGCAGACTGAAGACAGCG-AATCTTATTTCCCTGGCGTTGCAATG-GAA-CAGATTAAAG
66 AGCGGAGCAAACTGAAGACA-CGAAATATTATCTCCCTGAAGTTGC-A-GCGAAGAAGACTAAAG
* *
13704670 CTACAAATTATGACGGATCTTATCTTCCTGAAGTTGCAGTGGAGCAGATTGAAGCCACCAGCCTT
128 C-AC--A--ATGGCAGATCTTATCTTCCTGAAGTTGCAGTGGAGCAGATTGAAGCCACCAGCCTT
* * * * * * * *
13704735 ATCCCTCTAAAGTTGTAACGAAGCAGACTAAAGATAGTGAATCTTATTTCCCTAGCATTACAGTG
188 ATCTCTCTGAAGTTGCAGCGGAGTAGACTGAAGACAGTGAATCTTATTTCCCTAGCATTACAGTG
* * * *
13704800 GAACAAATTAAAGCTACAAATTATGGCGGATCTTATCTTCCTAAAGTTGCAGTGGAGCAGATTGA
253 GAACAAATTAAAACTACAAATTAGGGCAGATCTTATCTTCCTAAAGTTGCAGTGGAGCAGATTAA
*
13704865 AGCCACCAGCCTTGTCCCCCTGAAGTTGCAGCGGAGCAGACTGAAGACAGCGAATCTTATCTTCC
318 AGCCACCAGCCTTATCCCCCTGAAGTTGCAGCGGAGCAGACTGAAGACAGCGAATCTTATCTTCC
* *
13704930 TGAAGTTACAGTAGAGCAAATTAAAGCTACAAATTATGGCAGATCTTATCTTCCTGAAGTTGCAG
383 TGAAGTTACAGTAGAACAAATTAAAGCTACAAATTATGGCAGATCTTATCTTCCTAAAGTTGCAG
** * *
13704995 TGGAGCTGATTGAAGCCACCAGCCTTGTCTACCTGAAGTTGCAGTGGAGCAGACTAAAGACAGTG
448 TGGAGAAGATTGAAGCCACCAGCCTTATCTACCTGAAGTTGCAGCGGAGCAGACTAAAGACAGTG
13705060 A
513 A
** * *
13705061 ATCTTATCTTCCTAAAGTTGCAGCGGAGGAGATTGAAGCCATCAGCCTTATCTCCCTGAAGTTGC
1 ATCTTATCTTCCTAAAGTTGCAGCGGAACAAATTAAAGCCATCAGCCTTATCTCCCTGAAGTTGC
* * * * * *
13705126 AGCGGAGCAAACTGAAGACAGGAAATATTATCTTCTTGAAGTTGCAGTGGAGAAGATTAAAGCTA
66 AGCGGAGCAAACTGAAGACACGAAATATTATCTCCCTGAAGTTGCAGCGAAGAAGACTAAAGC-A
** **
13705191 CAAATTATGGCAGATCTTATCTTCCTGAAGTTATAGTGGAGTTGATTGAAGCCACCAGCCTTATC
130 C--A--ATGGCAGATCTTATCTTCCTGAAGTTGCAGTGGAGCAGATTGAAGCCACCAGCCTTATC
** **
13705256 TCTCTGAAGTTGCAGCGGAGTAGACTGAAGACAACGAATCTTATTTCCCT-GCCATTGTAGTGGA
191 TCTCTGAAGTTGCAGCGGAGTAGACTGAAGACAGTGAATCTTATTTCCCTAG-CATTACAGTGGA
** * *
13705320 ACAGGTTAAAACTACAAATTAGGGTAGATCTTATCTTCCTGAAA-TTGCAGTGGAGTAGATTAAA
255 ACAAATTAAAACTACAAATTAGGGCAGATCTTATCTTCCT-AAAGTTGCAGTGGAGCAGATTAAA
*
13705384 GCCACCAGCCTTATCTCCCTGAAGTTGCAGCGGAGCAGACTGAAGACAGCGAATCTTAT-TTCCC
319 GCCACCAGCCTTATCCCCCTGAAGTTGCAGCGGAGCAGACTGAAGACAGCGAATCTTATCTT-CC
** * * * * *
13705448 TGGCGTTGCAGTGGAACAGATTAAAGCTACAAATTATGGCGGATCTTATCTTCCTAAAGTTGTAG
383 TGAAGTTACAGTAGAACAAATTAAAGCTACAAATTATGGCAGATCTTATCTTCCTAAAGTTGCAG
* *
13705513 TGGAGAAGATTGAAGCCACCAGCCTTATCTCCCT-AATGTTGCAGCGGAGCAGACTGAAGACAGT
448 TGGAGAAGATTGAAGCCACCAGCCTTATCTACCTGAA-GTTGCAGCGGAGCAGACTAAAGACAGT
13705577 GA
512 GA
*** * * *
13705579 ATCTTAT-TTCCCTGGCGTTGCAGTGGAACAAATTAAAGCTACAAATTATGGCTGATCTTATCTT
1 ATCTTATCTT-CCTAAAGTTGCAGCGGAACAAATTAAAGC--C--ATCA--GC----CTTATCTC
* * * * * * ** *
13705643 CTTGAAGTTTCAGTGGAGCAGATTGAAG-CAACTAGCT-TTATCTCCCTGAAGTTGCAGCGAAGC
55 CCTGAAGTTGCAGCGGAGCAAACTGAAGAC-ACGAAATATTATCTCCCTGAAGTTGCAGCGAAGA
* * * * * *
13705706 AGACTGAAG-AC-A--GC-GAATCTTATCTTTCTGAAGTTGCAATAGAGGAGATTGAAGCTACCA
119 AGACTAAAGCACAATGGCAG-ATCTTATCTTCCTGAAGTTGCAGTGGAGCAGATTGAAGCCACCA
* *
13705766 GCCTTATCTC-CTTGAAGTTGCAGCGGACTAGACTGAAGACAGTGAATCTTATTTCCCTAGCGTT
183 GCCTTATCTCTC-TGAAGTTGCAGCGGAGTAGACTGAAGACAGTGAATCTTATTTCCCTAGCATT
* *
13705830 GCAATGGAACA
247 ACAGTGGAACA
13705841 GATTGAAGCC
Statistics
Matches: 659, Mismatches: 99, Indels: 44
0.82 0.12 0.05
Matches are distributed among these distances:
516 1 0.00
517 13 0.02
518 570 0.86
519 4 0.01
520 2 0.00
522 3 0.00
524 2 0.00
525 2 0.00
527 29 0.04
528 33 0.05
ACGTcount: A:0.30, C:0.20, G:0.23, T:0.27
Consensus pattern (513 bp):
ATCTTATCTTCCTAAAGTTGCAGCGGAACAAATTAAAGCCATCAGCCTTATCTCCCTGAAGTTGC
AGCGGAGCAAACTGAAGACACGAAATATTATCTCCCTGAAGTTGCAGCGAAGAAGACTAAAGCAC
AATGGCAGATCTTATCTTCCTGAAGTTGCAGTGGAGCAGATTGAAGCCACCAGCCTTATCTCTCT
GAAGTTGCAGCGGAGTAGACTGAAGACAGTGAATCTTATTTCCCTAGCATTACAGTGGAACAAAT
TAAAACTACAAATTAGGGCAGATCTTATCTTCCTAAAGTTGCAGTGGAGCAGATTAAAGCCACCA
GCCTTATCCCCCTGAAGTTGCAGCGGAGCAGACTGAAGACAGCGAATCTTATCTTCCTGAAGTTA
CAGTAGAACAAATTAAAGCTACAAATTATGGCAGATCTTATCTTCCTAAAGTTGCAGTGGAGAAG
ATTGAAGCCACCAGCCTTATCTACCTGAAGTTGCAGCGGAGCAGACTAAAGACAGTGA
Found at i:13705921 original size:45 final size:45
Alignment explanation
Indices: 13705687--13705936 Score: 163
Period size: 45 Copynumber: 5.6 Consensus size: 45
13705677 GCTTTATCTC
*
13705687 CCTGAAGTTGCAGCGAAGCAGACTGAAGACAGCGAATCTTATCTTT
1 CCTGAAGTTGCAGCGGAGCAGACTGAAGACAGCGAATCTTAT-TTT
*** * * * ** *
13705733 -CTGAAGTTGCAATAGAGGAGATTGAAG-CTA-CCAGCCTTA-TCT
1 CCTGAAGTTGCAGCGGAGCAGACTGAAGAC-AGCGAATCTTATTTT
* *
13705775 CCTTGAAGTTGCAGCGGA-CTAGACTGAAGACAGTGAATCTTATTTC
1 CC-TGAAGTTGCAGCGGAGC-AGACTGAAGACAGCGAATCTTATTTT
* ** * * * * * * *
13705821 CCT-AGCGTTGCAATGGAACAGATTGAAGCCA-CCAACCTTATCTC
1 CCTGA-AGTTGCAGCGGAGCAGACTGAAGACAGCGAATCTTATTTT
*
13705865 CCTAAAGTTGCAGCGGAGCAGACTGAAGACAGCGAATCTTATTTT
1 CCTGAAGTTGCAGCGGAGCAGACTGAAGACAGCGAATCTTATTTT
* * * *
13705910 TCTGAAGTTGCAGTGGAGTAGATTGAA
1 CCTGAAGTTGCAGCGGAGCAGACTGAA
13705937 ATCACCAGCC
Statistics
Matches: 148, Mismatches: 45, Indels: 23
0.69 0.21 0.11
Matches are distributed among these distances:
42 2 0.01
43 1 0.01
44 61 0.41
45 80 0.54
46 4 0.03
ACGTcount: A:0.30, C:0.20, G:0.24, T:0.26
Consensus pattern (45 bp):
CCTGAAGTTGCAGCGGAGCAGACTGAAGACAGCGAATCTTATTTT
Found at i:13706059 original size:44 final size:44
Alignment explanation
Indices: 13705945--13706182 Score: 139
Period size: 44 Copynumber: 5.3 Consensus size: 44
13705935 AAATCACCAG
* * *
13705945 CCTTATCTCCTTGAAGTT-TCAGTGAAGTAGATCAAAGCTACAAAT
1 CCTTATCTCCCTGAAGTTGT-AGTGGAGCAGATCAAAGCTAC-AAT
* * * *
13705990 -CTGT-TCTCTCTGAAATTAT-GTTGGAGCAGATCAAAGCCACAAT
1 CCT-TATCTCCCTGAAGTTGTAG-TGGAGCAGATCAAAGCTACAAT
* ** *
13706033 CCTTATCTCCCTGAAGTTGTAGTGGAGCAGGATAAAAATATACAAA
1 CCTTATCTCCCTGAAGTTGTAGTGGAGCA-GAT-CAAAGCTACAAT
* * * * *
13706079 CCTTATCTCCCTAAAGTTGCAGTGGAGCAGGTTGAAA-TTACCAAT
1 CCTTATCTCCCTGAAGTTGTAGTGGAGCA-GATCAAAGCTA-CAAT
* * * * * *
13706124 TCTTATCTCCTTGAAGTTGCAGTGGAGTAGATCGAATCTACAAGT
1 CCTTATCTCCCTGAAGTTGTAGTGGAGCAGATCAAAGCTACAA-T
13706169 -CTCT-TCTCCCTGAA
1 CCT-TATCTCCCTGAA
13706183 ATTACATTGG
Statistics
Matches: 152, Mismatches: 29, Indels: 25
0.74 0.14 0.12
Matches are distributed among these distances:
43 5 0.03
44 69 0.45
45 41 0.27
46 37 0.24
ACGTcount: A:0.30, C:0.21, G:0.18, T:0.30
Consensus pattern (44 bp):
CCTTATCTCCCTGAAGTTGTAGTGGAGCAGATCAAAGCTACAAT
Found at i:13706143 original size:45 final size:46
Alignment explanation
Indices: 13706028--13706150 Score: 160
Period size: 46 Copynumber: 2.7 Consensus size: 46
13706018 GATCAAAGCC
*
13706028 ACAATCCTTATCTCCCTGAAGTTGTAGTGGAGCAGGATAAAAATAT
1 ACAATCCTTATCTCCCTGAAGTTGCAGTGGAGCAGGATAAAAATAT
* * **
13706074 ACAAACCTTATCTCCCTAAAGTTGCAGTGGAGCAGG-TTGAAAT-T
1 ACAATCCTTATCTCCCTGAAGTTGCAGTGGAGCAGGATAAAAATAT
* *
13706118 ACCAATTCTTATCTCCTTGAAGTTGCAGTGGAG
1 A-CAATCCTTATCTCCCTGAAGTTGCAGTGGAG
13706151 TAGATCGAAT
Statistics
Matches: 67, Mismatches: 9, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
44 2 0.03
45 32 0.48
46 33 0.49
ACGTcount: A:0.31, C:0.20, G:0.20, T:0.29
Consensus pattern (46 bp):
ACAATCCTTATCTCCCTGAAGTTGCAGTGGAGCAGGATAAAAATAT
Found at i:13707662 original size:24 final size:25
Alignment explanation
Indices: 13707635--13707702 Score: 77
Period size: 24 Copynumber: 2.7 Consensus size: 25
13707625 AAAAATTCTC
* *
13707635 TTTTATCATAATTTATTTTAAGTTT
1 TTTTATCATAATTTATTTTAAGCTG
*
13707660 TTTTAT-ATTATTTATTTTAAGCTG
1 TTTTATCATAATTTATTTTAAGCTG
13707684 TTTTA-CATACTATTTATTT
1 TTTTATCATA--ATTTATTT
13707703 AAATTTCTTT
Statistics
Matches: 36, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
24 22 0.61
25 6 0.17
26 8 0.22
ACGTcount: A:0.26, C:0.06, G:0.04, T:0.63
Consensus pattern (25 bp):
TTTTATCATAATTTATTTTAAGCTG
Found at i:13707697 original size:26 final size:24
Alignment explanation
Indices: 13707645--13707702 Score: 71
Period size: 26 Copynumber: 2.3 Consensus size: 24
13707635 TTTTATCATA
** *
13707645 ATTTATTTTAAGTTTTTTTATATT
1 ATTTATTTTAAGTTTTTACATACT
13707669 ATTTATTTTAAGCTGTTTTACATACT
1 ATTTATTTTAAG-T-TTTTACATACT
13707695 ATTTATTT
1 ATTTATTT
13707703 AAATTTCTTT
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
24 12 0.41
25 1 0.03
26 16 0.55
ACGTcount: A:0.26, C:0.05, G:0.05, T:0.64
Consensus pattern (24 bp):
ATTTATTTTAAGTTTTTACATACT
Found at i:13707780 original size:21 final size:19
Alignment explanation
Indices: 13707736--13707785 Score: 66
Period size: 19 Copynumber: 2.6 Consensus size: 19
13707726 TTGTAAACTA
*
13707736 TTATATATATTTCAAATTT
1 TTATATATATTTAAAATTT
*
13707755 ATATATATATTTAAAATTGT
1 TTATATATATTTAAAATT-T
13707775 TT-TATATATTT
1 TTATATATATTT
13707786 TTAGGTTATT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
19 25 0.93
20 2 0.07
ACGTcount: A:0.38, C:0.02, G:0.02, T:0.58
Consensus pattern (19 bp):
TTATATATATTTAAAATTT
Found at i:13707869 original size:21 final size:23
Alignment explanation
Indices: 13707844--13707885 Score: 61
Period size: 22 Copynumber: 1.9 Consensus size: 23
13707834 TTATATTTTG
13707844 TTTA-TTTGAAACATT-TTATTA
1 TTTATTTTGAAACATTCTTATTA
*
13707865 TTTATTTTGAATCATTCTTAT
1 TTTATTTTGAAACATTCTTAT
13707886 AAATCATTTA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 4 0.22
22 10 0.56
23 4 0.22
ACGTcount: A:0.29, C:0.07, G:0.05, T:0.60
Consensus pattern (23 bp):
TTTATTTTGAAACATTCTTATTA
Found at i:13707913 original size:17 final size:17
Alignment explanation
Indices: 13707891--13707924 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
13707881 CTTATAAATC
13707891 ATTTACTTTAAAGTATT
1 ATTTACTTTAAAGTATT
*
13707908 ATTTACTTTAAATTATT
1 ATTTACTTTAAAGTATT
13707925 TTATATATTA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.35, C:0.06, G:0.03, T:0.56
Consensus pattern (17 bp):
ATTTACTTTAAAGTATT
Found at i:13712321 original size:2 final size:2
Alignment explanation
Indices: 13712314--13712343 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
13712304 TAAAAGGACA
13712314 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
13712344 GATAGTTTAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:13714022 original size:40 final size:39
Alignment explanation
Indices: 13713973--13714504 Score: 506
Period size: 40 Copynumber: 12.8 Consensus size: 39
13713963 TGGTTTCCTT
13713973 CGTCTGCTCCACTACTGCTTAGGGAGATAAGACTTGATG
1 CGTCTGCTCCACTACTGCTTAGGGAGATAAGACTTGATG
** *
13714012 CGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGGTTTCTTT
1 CG-TCTGCTCCACTACTGCTTAGGGAGATAAGA-C----TTGATG
* * * ** *
13714057 CGTCTGTTCCATTACTGCTTATGGAGATAAGACTGGTTTCTTT
1 CGTCTGCTCCACTACTGCTTAGGGAGATAAGAC----TTGATG
13714100 CGTCTGCTCCACTACTGCTTAGGGAGATAAGACTTGATG
1 CGTCTGCTCCACTACTGCTTAGGGAGATAAGACTTGATG
* * *
13714139 TGTTCTGCTCCACTACTGCTTAGGGAGATAAGATTTGGTTG
1 CG-TCTGCTCCACTACTGCTTAGGGAGATAAGACTT-GATG
* * ** *
13714180 TGATCTGCTCCACTACTACTTAGGGAGATAAGATCTGGTTTCTTT
1 CG-TCTGCTCCACTACTGCTTAGGGAGATAAGA-C----TTGATG
* *
13714225 CGTCTGCTCCACTACCGCTTAGGAAGATAAGACTTGATG
1 CGTCTGCTCCACTACTGCTTAGGGAGATAAGACTTGATG
*
13714264 TGTTCTGCTCCACTACTGCTTAGGGAGATAAGACTTGATG
1 CG-TCTGCTCCACTACTGCTTAGGGAGATAAGACTTGATG
* ** *
13714304 TGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGGTTTCTTT
1 CG-TCTGCTCCACTACTGCTTAGGGAGATAAGA-C----TTGATG
*
13714349 CGTCTGTTCCACTACTGCTTAGGGAGATAAGACTTGATG
1 CGTCTGCTCCACTACTGCTTAGGGAGATAAGACTTGATG
* ** *
13714388 TGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGGTTTCTTT
1 CG-TCTGCTCCACTACTGCTTAGGGAGATAAGA-C----TTGATG
13714433 CGTCTGCTCCACTACTGCTTAGGGAGATAAGACTTGATG
1 CGTCTGCTCCACTACTGCTTAGGGAGATAAGACTTGATG
*
13714472 TGATCTGCTCCACTACTGCTTAGGGAGATAAGA
1 CG-TCTGCTCCACTACTGCTTAGGGAGATAAGA
13714505 TCTGTAATCT
Statistics
Matches: 418, Mismatches: 49, Indels: 51
0.81 0.09 0.10
Matches are distributed among these distances:
39 18 0.04
40 188 0.45
41 37 0.09
43 44 0.11
44 113 0.27
45 16 0.04
46 2 0.00
ACGTcount: A:0.22, C:0.21, G:0.24, T:0.33
Consensus pattern (39 bp):
CGTCTGCTCCACTACTGCTTAGGGAGATAAGACTTGATG
Found at i:13714255 original size:168 final size:167
Alignment explanation
Indices: 13713975--13714505 Score: 749
Period size: 168 Copynumber: 3.2 Consensus size: 167
13713965 GTTTCCTTCG
* * *
13713975 TCTGCTCCACTACTGCTTAGGGAGATAAGACTT-GATGCGATCTGCTCCACTACTGCTTAGGGAG
1 TCTGCTCCACTACTGCTTAGGGAGATAAGATTTGGTTGTGATCTGCTCCACTACTGCTTAGGGAG
* *
13714039 ATAAGATCTGGTTTCTTTCGTCTGTTCCATTACTGCTTATGGAGATAAGACTGGTTTCTTTCGTC
66 ATAAGATCTGGTTTCTTTCGTCTGCTCCACTACTGCTTA-GGAGATAAGACTGGTTTCTTTCGTC
*
13714104 TGCTCCACTACTGCTTAGGGAGATAAGACTTGATGTGT
130 TGCTCCACTACTGCTTAGGGAGATAAGACTTGATGTGA
*
13714142 TCTGCTCCACTACTGCTTAGGGAGATAAGATTTGGTTGTGATCTGCTCCACTACTACTTAGGGAG
1 TCTGCTCCACTACTGCTTAGGGAGATAAGATTTGGTTGTGATCTGCTCCACTACTGCTTAGGGAG
* * * * *
13714207 ATAAGATCTGGTTTCTTTCGTCTGCTCCACTACCGCTTAGGAAGATAAGACTTG-ATGTGT--TC
66 ATAAGATCTGGTTTCTTTCGTCTGCTCCACTACTGCTTAGG-AGATAAGACTGGTTTCTTTCGTC
13714269 TGCTCCACTACTGCTTAGGGAGATAAGACTTGATGTGA
130 TGCTCCACTACTGCTTAGGGAGATAAGACTTGATGTGA
* * *
13714307 TCTGCTCCACTACTGCTTAGGGAGATAAGATCTGGTTTCTTTCG-TCTGTTCCACTACTGCTTAG
1 TCTGCTCCACTACTGCTTAGGGAGATAAGATTTGG--T-TGT-GATCTGCTCCACTACTGCTTAG
** *
13714371 GGAGATAAGA-C---TTGATGT-GATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGGTTTCT
62 GGAGATAAGATCTGGTTTCTTTCG-TCTGCTCCACTACTGCTTA-GGAGATAAGA-CTGGTTTCT
13714431 TTCGTCTGCTCCACTACTGCTTAGGGAGATAAGACTTGATGTGA
124 TTCGTCTGCTCCACTACTGCTTAGGGAGATAAGACTTGATGTGA
13714475 TCTGCTCCACTACTGCTTAGGGAGATAAGAT
1 TCTGCTCCACTACTGCTTAGGGAGATAAGAT
13714506 CTGTAATCTT
Statistics
Matches: 328, Mismatches: 24, Indels: 23
0.87 0.06 0.06
Matches are distributed among these distances:
163 1 0.00
164 30 0.09
165 78 0.24
166 3 0.01
167 39 0.12
168 176 0.54
169 1 0.00
ACGTcount: A:0.22, C:0.21, G:0.24, T:0.34
Consensus pattern (167 bp):
TCTGCTCCACTACTGCTTAGGGAGATAAGATTTGGTTGTGATCTGCTCCACTACTGCTTAGGGAG
ATAAGATCTGGTTTCTTTCGTCTGCTCCACTACTGCTTAGGAGATAAGACTGGTTTCTTTCGTCT
GCTCCACTACTGCTTAGGGAGATAAGACTTGATGTGA
Found at i:13714369 original size:124 final size:126
Alignment explanation
Indices: 13713952--13714504 Score: 754
Period size: 124 Copynumber: 4.4 Consensus size: 126
13713942 GCAACTTCAA
* * *
13713952 GGAGATAGGAT-TGGTTTCCTTCGTCTGCTCCACTACTGCTTAGGGAGATAAGACTTGATGCGAT
1 GGAGATAAGATCTGGTTTCTTTCGTCTGCTCCACTACTGCTTAGGGAGATAAGACTTGATGTGAT
* * * * *
13714016 CTGCTCCACTACTGCTTAGGGAGATAAGATCTGGTTTCTTTCGTCTGTTCCATTACTGCTTAT
66 CTGCTCCACTACTGCTTAGGGAGATAAGATC--GTTGCTGTCGTCTGCTCCACTACTGCTTAG
*
13714079 GGAGATAAGA-CTGGTTTCTTTCGTCTGCTCCACTACTGCTTAGGGAGATAAGACTTGATGTGTT
1 GGAGATAAGATCTGGTTTCTTTCGTCTGCTCCACTACTGCTTAGGGAGATAAGACTTGATGTGAT
* *
13714143 CTGCTCCACTACTGCTTAGGGAGATAAGAT--TTGGTTGT-GATCTGCTCCACTACTACTTAG
66 CTGCTCCACTACTGCTTAGGGAGATAAGATCGTT-GCTGTCG-TCTGCTCCACTACTGCTTAG
* * *
13714203 GGAGATAAGATCTGGTTTCTTTCGTCTGCTCCACTACCGCTTAGGAAGATAAGACTTGATGTGTT
1 GGAGATAAGATCTGGTTTCTTTCGTCTGCTCCACTACTGCTTAGGGAGATAAGACTTGATGTGAT
*
13714268 CTGCTCCACTACTGCTTAGGGAGATAAGA-C-TTGATGT-GATCTGCTCCACTACTGCTTAG
66 CTGCTCCACTACTGCTTAGGGAGATAAGATCGTTGCTGTCG-TCTGCTCCACTACTGCTTAG
*
13714327 GGAGATAAGATCTGGTTTCTTTCGTCTGTTCCACTACTGCTTAGGGAGATAAGACTTGATGTGAT
1 GGAGATAAGATCTGGTTTCTTTCGTCTGCTCCACTACTGCTTAGGGAGATAAGACTTGATGTGAT
* *
13714392 CTGCTCCACTACTGCTTAGGGAGATAAGATCTGGTTTCTTTCGTCTGCTCCACTACTGCTTAG
66 CTGCTCCACTACTGCTTAGGGAGATAAGATC--GTTGCTGTCGTCTGCTCCACTACTGCTTAG
** *
13714455 GGAGATAAGA-C---TTGATGT-GATCTGCTCCACTACTGCTTAGGGAGATAAGA
1 GGAGATAAGATCTGGTTTCTTTCG-TCTGCTCCACTACTGCTTAGGGAGATAAGA
13714505 TCTGTAATCT
Statistics
Matches: 389, Mismatches: 26, Indels: 25
0.88 0.06 0.06
Matches are distributed among these distances:
123 4 0.01
124 176 0.45
125 84 0.22
127 90 0.23
128 34 0.09
129 1 0.00
ACGTcount: A:0.22, C:0.21, G:0.24, T:0.33
Consensus pattern (126 bp):
GGAGATAAGATCTGGTTTCTTTCGTCTGCTCCACTACTGCTTAGGGAGATAAGACTTGATGTGAT
CTGCTCCACTACTGCTTAGGGAGATAAGATCGTTGCTGTCGTCTGCTCCACTACTGCTTAG
Found at i:13714505 original size:84 final size:83
Alignment explanation
Indices: 13713975--13714508 Score: 635
Period size: 84 Copynumber: 6.4 Consensus size: 83
13713965 GTTTCCTTCG
** *
13713975 TCTGCTCCACTACTGCTTAGGGAGATAAGA-C---TTGATGCGATCTGCTCCACTACTGCTTAGG
1 TCTGCTCCACTACTGCTTAGGGAGATAAGATCTGGTTCTTTCG-TCTGCTCCACTACTGCTTAGG
** *
13714036 GAGATAAGATCTGGTTTCTTTCG-
65 GAGATAAGA-C---TTGATGT-GA
* * *
13714059 TCTGTTCCATTACTGCTTATGGAGATAAGA-CTGGTTTCTTTCGTCTGCTCCACTACTGCTTAGG
1 TCTGCTCCACTACTGCTTAGGGAGATAAGATCTGG-TTCTTTCGTCTGCTCCACTACTGCTTAGG
*
13714123 GAGATAAGACTTGATGTGT
65 GAGATAAGACTTGATGTGA
* * *
13714142 TCTGCTCCACTACTGCTTAGGGAGATAAGATTTGG-T-TGT-GATCTGCTCCACTACTACTTAGG
1 TCTGCTCCACTACTGCTTAGGGAGATAAGATCTGGTTCTTTCG-TCTGCTCCACTACTGCTTAGG
** *
13714204 GAGATAAGATCTGGTTTCTTTCG-
65 GAGATAAGA-C---TTGATGT-GA
* * * * * *
13714227 TCTGCTCCACTACCGCTTAGGAAGATAAGA-CTTGATGTGT--TCTGCTCCACTACTGCTTAGGG
1 TCTGCTCCACTACTGCTTAGGGAGATAAGATCTGGTTCTTTCGTCTGCTCCACTACTGCTTAGGG
13714289 AGATAAGACTTGATGTGA
66 AGATAAGACTTGATGTGA
*
13714307 TCTGCTCCACTACTGCTTAGGGAGATAAGATCTGGTTTCTTTCGTCTGTTCCACTACTGCTTAGG
1 TCTGCTCCACTACTGCTTAGGGAGATAAGATCTGG-TTCTTTCGTCTGCTCCACTACTGCTTAGG
13714372 GAGATAAGACTTGATGTGA
65 GAGATAAGACTTGATGTGA
13714391 TCTGCTCCACTACTGCTTAGGGAGATAAGATCTGGTTTCTTTCGTCTGCTCCACTACTGCTTAGG
1 TCTGCTCCACTACTGCTTAGGGAGATAAGATCTGG-TTCTTTCGTCTGCTCCACTACTGCTTAGG
13714456 GAGATAAGACTTGATGTGA
65 GAGATAAGACTTGATGTGA
13714475 TCTGCTCCACTACTGCTTAGGGAGATAAGATCTG
1 TCTGCTCCACTACTGCTTAGGGAGATAAGATCTG
13714509 TAATCTTCAA
Statistics
Matches: 397, Mismatches: 34, Indels: 38
0.85 0.07 0.08
Matches are distributed among these distances:
79 1 0.00
80 33 0.08
81 34 0.09
82 6 0.02
83 32 0.08
84 218 0.55
85 33 0.08
86 5 0.01
87 30 0.08
88 5 0.01
ACGTcount: A:0.22, C:0.21, G:0.24, T:0.34
Consensus pattern (83 bp):
TCTGCTCCACTACTGCTTAGGGAGATAAGATCTGGTTCTTTCGTCTGCTCCACTACTGCTTAGGG
AGATAAGACTTGATGTGA
Found at i:13714775 original size:45 final size:46
Alignment explanation
Indices: 13714726--13714832 Score: 114
Period size: 44 Copynumber: 2.4 Consensus size: 46
13714716 GATGCAGGAG
* *
13714726 GGCAAGATCTGCTATCTTTAG-TCTGCTCCACTGTTAGTACAAGAA
1 GGCAAGATCTGCTATCTTTAGATCTGCTCCACCGTCAGTACAAGAA
* * * *
13714771 GGCAAGA-CTGGCT-TC-TTCGATCTGCTTCGCCGTCAGTACAGGAA
1 GGCAAGATCT-GCTATCTTTAGATCTGCTCCACCGTCAGTACAAGAA
*
13714815 GGTAAGATCTGCTATCTT
1 GGCAAGATCTGCTATCTT
13714833 CAACCAGCTC
Statistics
Matches: 50, Mismatches: 7, Indels: 9
0.76 0.11 0.14
Matches are distributed among these distances:
43 3 0.06
44 32 0.64
45 14 0.28
46 1 0.02
ACGTcount: A:0.23, C:0.23, G:0.23, T:0.30
Consensus pattern (46 bp):
GGCAAGATCTGCTATCTTTAGATCTGCTCCACCGTCAGTACAAGAA
Found at i:13715016 original size:88 final size:88
Alignment explanation
Indices: 13714784--13715496 Score: 871
Period size: 88 Copynumber: 8.1 Consensus size: 88
13714774 AAGACTGGCT
* * * * * * * *
13714784 TCTTCGATCTGCTTCGCCGTCAGTACAGGAAGGTAAGATCTGCTATCTTCAACCAGCTCTACTGC
1 TCTTCGATCTGCTTCGCTGTTAATGCAGGAAGGCAAGATCTGCTGTCTTCAACCAGCTCCACTAC
13714849 AACCGATG-GAGGCAAGGTTT-TG
66 AACCGA-GAGAGGCAAGGTTTGTG
* * * * * *
13714871 TTTTCGATCTGCTTCGCTGTTAACGCAGGAATGCAAGATCTGCTATTTTTAACCAGCTCCACTAC
1 TCTTCGATCTGCTTCGCTGTTAATGCAGGAAGGCAAGATCTGCTGTCTTCAACCAGCTCCACTAC
13714936 AACCGAGAGAGGCAAGGTTTGTG
66 AACCGAGAGAGGCAAGGTTTGTG
* * * * * * **
13714959 TCTTCGACCTACTTCGCTGTCAATGCAAGAAGGCAATATCTGTTGTCTTCAACCAGCTCCACCCC
1 TCTTCGATCTGCTTCGCTGTTAATGCAGGAAGGCAAGATCTGCTGTCTTCAACCAGCTCCACTAC
13715024 AACCGAGAGAGGCAAGGTTTGTG
66 AACCGAGAGAGGCAAGGTTTGTG
* * **
13715047 TCTTCGATCTGCTTAGCTGTTAATGCAGGAAGGCAATATCTGCTGTCTTCAACCAGCTCTGCTAC
1 TCTTCGATCTGCTTCGCTGTTAATGCAGGAAGGCAAGATCTGCTGTCTTCAACCAGCTCCACTAC
*
13715112 ATCCGAGAGAGGCAAGGTTTGTG
66 AACCGAGAGAGGCAAGGTTTGTG
* * * *
13715135 TCTTCGACCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCACCAC
1 TCTTCGATCTGCTTCGCTGTTAATGCAGGAAGGCAAGATCTGCTGTCTTCAACCAGCTCCACTAC
**
13715200 AATAGAGAGAGGCAAGGTTTGTG
66 AACCGAGAGAGGCAAGGTTTGTG
* ***
13715223 TCTTCGATCTGCTTCGCTGTTAATGCAGGAAGGCAAGATCTACTGTCTTCAACCAGCTGTGCTAC
1 TCTTCGATCTGCTTCGCTGTTAATGCAGGAAGGCAAGATCTGCTGTCTTCAACCAGCTCCACTAC
*
13715288 ACCCGAGAGAGGCAAGGTTT-TG
66 AACCGAGAGAGGCAAGGTTTGTG
* * * ** * * *
13715310 TTTTCGATCTGCTTCGCTGTTAATGCAGGAAGGCAAGATCTGTTATCTTTGACTAACTCCACTGC
1 TCTTCGATCTGCTTCGCTGTTAATGCAGGAAGGCAAGATCTGCTGTCTTCAACCAGCTCCACTAC
*
13715375 AACTGATG-GAGGCAAGGTTT-TG
66 AACCGA-GAGAGGCAAGGTTTGTG
* *
13715397 TTTTCGATCTGCTTCGCTGTTAATGCAGGAAGGCAAGATCTGCTGTCTTTAACCAGCTCCACTAC
1 TCTTCGATCTGCTTCGCTGTTAATGCAGGAAGGCAAGATCTGCTGTCTTCAACCAGCTCCACTAC
* * *
13715462 AACTGATG-GAGGCAAGGATCTGTT
66 AACCGA-GAGAGGCAAGG-TTTGTG
*
13715486 TCTTTGATCTG
1 TCTTCGATCTG
13715497 TTCTCTGGGG
Statistics
Matches: 538, Mismatches: 83, Indels: 8
0.86 0.13 0.01
Matches are distributed among these distances:
86 1 0.00
87 220 0.41
88 307 0.57
89 10 0.02
ACGTcount: A:0.24, C:0.24, G:0.24, T:0.29
Consensus pattern (88 bp):
TCTTCGATCTGCTTCGCTGTTAATGCAGGAAGGCAAGATCTGCTGTCTTCAACCAGCTCCACTAC
AACCGAGAGAGGCAAGGTTTGTG
Found at i:13715051 original size:43 final size:43
Alignment explanation
Indices: 13714921--13715227 Score: 106
Period size: 44 Copynumber: 7.0 Consensus size: 43
13714911 TGCTATTTTT
*
13714921 AACCAGCTCCACTACAACCGAGAGAGGCAAGGTTTGTGTCTTC
1 AACCAGCTCCACCACAACCGAGAGAGGCAAGGTTTGTGTCTTC
* * * ** * * ** *
13714964 GACCTA-CTTCGCTGTCAATGCAAGA-AGGCAATATCTGTTGTCTTC
1 AACC-AGCTCCAC-CACAA-CCGAGAGAGGCAAGGTTTG-TGTCTTC
*
13715009 AACCAGCTCCACCCCAACCGAGAGAGGCAAGGTTTGTGTCTTC
1 AACCAGCTCCACCACAACCGAGAGAGGCAAGGTTTGTGTCTTC
* * * * *** * ** *
13715052 GATCTGCT-TAGCTGTTAA-TGCAG-GAAGGCAATATCTGCTGTCTTC
1 AACCAGCTCCA-C-CACAACCG-AGAG-AGGCAAGGTTTG-TGTCTTC
** * *
13715097 AACCAGCTCTGCTACATCCGAGAGAGGCAAGGTTTGTGTCTTC
1 AACCAGCTCCACCACAACCGAGAGAGGCAAGGTTTGTGTCTTC
* * * * ** * * *
13715140 GACCTGCTTCGCTGTCAA-TGCAG-GAAGGCAAGATCTGTTGTCTTC
1 AACCAGCTCCAC-CACAACCG-AGAG-AGGCAAGGTTTG-TGTCTTC
**
13715185 AACCAGCTCCACCACAATAGAGAGAGGCAAGGTTTGTGTCTTC
1 AACCAGCTCCACCACAACCGAGAGAGGCAAGGTTTGTGTCTTC
13715228 GATCTGCTTC
Statistics
Matches: 182, Mismatches: 62, Indels: 40
0.64 0.22 0.14
Matches are distributed among these distances:
42 1 0.01
43 50 0.27
44 80 0.44
45 50 0.27
46 1 0.01
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.26
Consensus pattern (43 bp):
AACCAGCTCCACCACAACCGAGAGAGGCAAGGTTTGTGTCTTC
Found at i:13716110 original size:108 final size:108
Alignment explanation
Indices: 13715921--13716116 Score: 277
Period size: 108 Copynumber: 1.8 Consensus size: 108
13715911 GAAAAATGCT
**
13715921 TGAAAAAGATTATCAAAATAGACAAAATGAAATTTTGTTGAGATTAAAGCTCTAAACAAACAAAT
1 TGAAAAAGATTATCAAAATAGACAAAATGAAATTTTGTTGAGAGCAAAGCTCTAAACAAACAAAT
*
13715986 CAATCAGGACAGCAAATTTTGCTGAGATACGAGATGTATAAGA
66 CAATCAAGACAGCAAATTTTGCTGAGATACGAGATGTATAAGA
* * * * **
13716029 TGAAAAAGATTATCACAATGGATAAGATGGAAA-TTTGTTGAGAGCAAAGCTCTAAATGAACAAA
1 TGAAAAAGATTATCAAAATAGACAAAAT-GAAATTTTGTTGAGAGCAAAGCTCTAAACAAACAAA
* *
13716093 TTAATCAAGATAGCAAATTTTGCT
65 TCAATCAAGACAGCAAATTTTGCT
13716117 AGAATACAAA
Statistics
Matches: 76, Mismatches: 11, Indels: 2
0.85 0.12 0.02
Matches are distributed among these distances:
108 72 0.95
109 4 0.05
ACGTcount: A:0.46, C:0.11, G:0.17, T:0.26
Consensus pattern (108 bp):
TGAAAAAGATTATCAAAATAGACAAAATGAAATTTTGTTGAGAGCAAAGCTCTAAACAAACAAAT
CAATCAAGACAGCAAATTTTGCTGAGATACGAGATGTATAAGA
Found at i:13716180 original size:45 final size:43
Alignment explanation
Indices: 13716082--13716182 Score: 112
Period size: 45 Copynumber: 2.3 Consensus size: 43
13716072 GCAAAGCTCT
* * *
13716082 AAATGAACAAATTAATCAAGATAGCAAATTTTGCTAGAATACA
1 AAATGAATAAATTAATCAAGATAGCAAATTTTGCAAAAATACA
* **
13716125 AAATGAGAATAAATTAATCAAGATGGCGTATTTTGTCAAAAATACAA
1 AAAT--GAATAAATTAATCAAGATAGCAAATTTTG-CAAAAATAC-A
13716172 AAATGAATAAA
1 AAATGAATAAA
13716183 ATGGAAATAG
Statistics
Matches: 48, Mismatches: 6, Indels: 6
0.80 0.10 0.10
Matches are distributed among these distances:
43 4 0.08
45 32 0.67
46 7 0.15
47 5 0.10
ACGTcount: A:0.52, C:0.09, G:0.13, T:0.26
Consensus pattern (43 bp):
AAATGAATAAATTAATCAAGATAGCAAATTTTGCAAAAATACA
Found at i:13716482 original size:18 final size:18
Alignment explanation
Indices: 13716454--13716509 Score: 69
Period size: 18 Copynumber: 3.1 Consensus size: 18
13716444 GGCCTCTCCT
*
13716454 TTTTCTCTTTTCTTTTTTG
1 TTTT-TCTTTTCTTTTTTC
13716473 TTTTTCTTTTCTTTTTTC
1 TTTTTCTTTTCTTTTTTC
*
13716491 TTTTTGTTTAT-TTTTTTC
1 TTTTTCTTT-TCTTTTTTC
13716509 T
1 T
13716510 CAAGTGAATT
Statistics
Matches: 34, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
18 29 0.85
19 5 0.15
ACGTcount: A:0.02, C:0.12, G:0.04, T:0.82
Consensus pattern (18 bp):
TTTTTCTTTTCTTTTTTC
Found at i:13716483 original size:25 final size:25
Alignment explanation
Indices: 13716454--13716510 Score: 80
Period size: 25 Copynumber: 2.3 Consensus size: 25
13716444 GGCCTCTCCT
13716454 TTTTCTCTTTTCTTTTTTGTTT-TTC
1 TTTTCTCTTTTC-TTTTTGTTTATTC
* *
13716479 TTTTCTTTTTTCTTTTTGTTTATTT
1 TTTTCTCTTTTCTTTTTGTTTATTC
13716504 TTTTCTC
1 TTTTCTC
13716511 AAGTGAATTT
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
24 9 0.32
25 19 0.68
ACGTcount: A:0.02, C:0.14, G:0.04, T:0.81
Consensus pattern (25 bp):
TTTTCTCTTTTCTTTTTGTTTATTC
Found at i:13718425 original size:62 final size:62
Alignment explanation
Indices: 13718244--13718427 Score: 341
Period size: 62 Copynumber: 3.0 Consensus size: 62
13718234 AACTCAAAGC
* *
13718244 ATTTTTGGATTTTAGGAAATTTATTGTATGCAATGAAATGTAATGTTGATGCATGAACGCGT
1 ATTTTTGGATTTTAGGAAATTTATTGCATGCAATGAAATGTAATGTTGATGCATGAATGCGT
13718306 ATTTTTGGATTTTAGGAAATTTATTGCATGCAATGAAATGTAATGTTGATGCATGAATGCGT
1 ATTTTTGGATTTTAGGAAATTTATTGCATGCAATGAAATGTAATGTTGATGCATGAATGCGT
*
13718368 ATTTTTGGATTTTAGGAAATTTATTGCATACAATGAAATGTAATGTTGATGCATGAATGC
1 ATTTTTGGATTTTAGGAAATTTATTGCATGCAATGAAATGTAATGTTGATGCATGAATGC
13718428 AAAAAAGAGA
Statistics
Matches: 119, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
62 119 1.00
ACGTcount: A:0.32, C:0.07, G:0.22, T:0.40
Consensus pattern (62 bp):
ATTTTTGGATTTTAGGAAATTTATTGCATGCAATGAAATGTAATGTTGATGCATGAATGCGT
Found at i:13732930 original size:15 final size:17
Alignment explanation
Indices: 13732905--13732936 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
13732895 AGTAACAATA
13732905 ATTAGTACAGTA-ACAG
1 ATTAGTACAGTATACAG
13732921 ATTA-TACAGTATACAG
1 ATTAGTACAGTATACAG
13732937 GTCCTACCCA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 7 0.47
16 8 0.53
ACGTcount: A:0.44, C:0.12, G:0.16, T:0.28
Consensus pattern (17 bp):
ATTAGTACAGTATACAG
Found at i:13740446 original size:18 final size:20
Alignment explanation
Indices: 13740423--13740461 Score: 55
Period size: 18 Copynumber: 2.0 Consensus size: 20
13740413 AGCCCATTAC
13740423 AGTAACA-ATAAT-CAGTAT
1 AGTAACAGATAATACAGTAT
*
13740441 AGTAACAGATTATACAGTAT
1 AGTAACAGATAATACAGTAT
13740461 A
1 A
13740462 CAGCTCCTAC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 7 0.39
19 4 0.22
20 7 0.39
ACGTcount: A:0.49, C:0.10, G:0.13, T:0.28
Consensus pattern (20 bp):
AGTAACAGATAATACAGTAT
Found at i:13752494 original size:14 final size:14
Alignment explanation
Indices: 13752475--13752514 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 14
13752465 TTGATTGACA
13752475 GTAAAATGTTTTCC
1 GTAAAATGTTTTCC
* *
13752489 GTAAAATGATTTCT
1 GTAAAATGTTTTCC
*
13752503 GGAAAATGTTTT
1 GTAAAATGTTTT
13752515 ACTTTTCTGT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.33, C:0.07, G:0.17, T:0.42
Consensus pattern (14 bp):
GTAAAATGTTTTCC
Found at i:13752527 original size:34 final size:35
Alignment explanation
Indices: 13752483--13752549 Score: 100
Period size: 35 Copynumber: 1.9 Consensus size: 35
13752473 CAGTAAAATG
* *
13752483 TTTTCCGTAAAATGA-TTTCTGGAAAATGTTTTAC
1 TTTTCCGTAAAATGACTTACTGGAAAATATTTTAC
*
13752517 TTTTCTGTAAAATGACTTACTGGAAAATATTTT
1 TTTTCCGTAAAATGACTTACTGGAAAATATTTT
13752550 CTGGTGTTTG
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
34 14 0.48
35 15 0.52
ACGTcount: A:0.31, C:0.10, G:0.13, T:0.45
Consensus pattern (35 bp):
TTTTCCGTAAAATGACTTACTGGAAAATATTTTAC
Found at i:13752536 original size:20 final size:20
Alignment explanation
Indices: 13752498--13752537 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
13752488 CGTAAAATGA
**
13752498 TTTCTGGAAAATGTTTTACT
1 TTTCTGGAAAATGACTTACT
*
13752518 TTTCTGTAAAATGACTTACT
1 TTTCTGGAAAATGACTTACT
13752538 GGAAAATATT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.28, C:0.12, G:0.12, T:0.47
Consensus pattern (20 bp):
TTTCTGGAAAATGACTTACT
Found at i:13753920 original size:27 final size:27
Alignment explanation
Indices: 13753890--13753959 Score: 79
Period size: 27 Copynumber: 2.6 Consensus size: 27
13753880 AATAATCAAT
*
13753890 TCAATATCCAACAATGTTAAAACATA-A
1 TCAATATCCAACAAT-TCAAAACATATA
* *
13753917 TCAATATCTAACAAATTCAAGACATATA
1 TCAATATCCAAC-AATTCAAAACATATA
*
13753945 TCAAAATCCAACAAT
1 TCAATATCCAACAAT
13753960 CTAAAATTTG
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
27 22 0.61
28 14 0.39
ACGTcount: A:0.51, C:0.20, G:0.03, T:0.26
Consensus pattern (27 bp):
TCAATATCCAACAATTCAAAACATATA
Found at i:13755674 original size:31 final size:34
Alignment explanation
Indices: 13755610--13755679 Score: 94
Period size: 35 Copynumber: 2.1 Consensus size: 34
13755600 CATGTGTTTA
*
13755610 TAAAGAGTTTTAAATTATAATATGTTTCATGTATT
1 TAAAGAGTTTTAAATTATAATATGTATCATGTA-T
13755645 TAAAGAGTTTTAAA-TAT-AT-TG-ATCATGTAT
1 TAAAGAGTTTTAAATTATAATATGTATCATGTAT
13755675 TAAAG
1 TAAAG
13755680 TTACCATGAC
Statistics
Matches: 34, Mismatches: 1, Indels: 5
0.85 0.03 0.12
Matches are distributed among these distances:
30 6 0.18
31 7 0.21
32 2 0.06
33 2 0.06
34 3 0.09
35 14 0.41
ACGTcount: A:0.40, C:0.03, G:0.13, T:0.44
Consensus pattern (34 bp):
TAAAGAGTTTTAAATTATAATATGTATCATGTAT
Found at i:13755752 original size:34 final size:34
Alignment explanation
Indices: 13755704--13755779 Score: 143
Period size: 34 Copynumber: 2.2 Consensus size: 34
13755694 AATATCTTTC
*
13755704 ATGTATTTGTTATATATTGATCATAGTTAATAAT
1 ATGTTTTTGTTATATATTGATCATAGTTAATAAT
13755738 ATGTTTTTGTTATATATTGATCATAGTTAATAAT
1 ATGTTTTTGTTATATATTGATCATAGTTAATAAT
13755772 ATGTTTTT
1 ATGTTTTT
13755780 ATAAAGTTAC
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
34 41 1.00
ACGTcount: A:0.32, C:0.03, G:0.12, T:0.54
Consensus pattern (34 bp):
ATGTTTTTGTTATATATTGATCATAGTTAATAAT
Found at i:13755845 original size:23 final size:23
Alignment explanation
Indices: 13755779--13755845 Score: 58
Period size: 20 Copynumber: 3.2 Consensus size: 23
13755769 AATATGTTTT
13755779 TATAAAGTTACCATGACTTAAAA
1 TATAAAGTTACCATGACTTAAAA
* *
13755802 TAT--A-TTGATCATGA-TT---T
1 TATAAAGTT-ACCATGACTTAAAA
13755819 TATAAAGTTACCATGACTTAAAA
1 TATAAAGTTACCATGACTTAAAA
13755842 TATA
1 TATA
13755846 TTGCCCAAAA
Statistics
Matches: 32, Mismatches: 4, Indels: 16
0.62 0.08 0.31
Matches are distributed among these distances:
17 3 0.09
19 7 0.22
20 8 0.25
21 7 0.22
23 7 0.22
ACGTcount: A:0.43, C:0.10, G:0.09, T:0.37
Consensus pattern (23 bp):
TATAAAGTTACCATGACTTAAAA
Found at i:13762698 original size:63 final size:63
Alignment explanation
Indices: 13762623--13762762 Score: 253
Period size: 63 Copynumber: 2.2 Consensus size: 63
13762613 AGTAAAGATA
** *
13762623 AAAACTCAAGAGAAAACTGTGTTGTAAGATAAAATAAAAAACTTCGGGAAAAAGGACTCAGTG
1 AAAACTCAAGAGAAAACTGCATTGTAAAATAAAATAAAAAACTTCGGGAAAAAGGACTCAGTG
13762686 AAAACTCAAGAGAAAACTGCATTGTAAAATAAAATAAAAAACTTCGGGAAAAAGGACTCAGTG
1 AAAACTCAAGAGAAAACTGCATTGTAAAATAAAATAAAAAACTTCGGGAAAAAGGACTCAGTG
13762749 AAAACTCAAGAGAA
1 AAAACTCAAGAGAA
13762763 GATGCACAAA
Statistics
Matches: 74, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
63 74 1.00
ACGTcount: A:0.52, C:0.12, G:0.19, T:0.17
Consensus pattern (63 bp):
AAAACTCAAGAGAAAACTGCATTGTAAAATAAAATAAAAAACTTCGGGAAAAAGGACTCAGTG
Found at i:13770788 original size:668 final size:660
Alignment explanation
Indices: 13769288--13770837 Score: 1760
Period size: 670 Copynumber: 2.3 Consensus size: 660
13769278 ATGCACTATA
* * * * *
13769288 ATATTAAAAAATATATAAAAATATTAAAATGATGATTTAGTTTAATGGTAAATTTAATATTTTAC
1 ATATTAAAAAATGTATAAAAA-ATCAAAATAATGATTTAGTTGAATGGTAAATTTAAAATTTTAC
* * * * * *
13769353 TAATTCAATTGGCACGTGTTTAAATCTCATTATATACATATTTTTGTTGGTTTTTGTTAAAATAA
65 TAATCCAATT-GCACGAGTTTAAATCTCTTTATATGCATATTTTTCTTGATTTTTGTTAAAATAA
* * * * * * * *
13769418 AAATACTAAAATACTCTCAAATAATATGATTCACTTTAAATACAGAAGGACATTTCCATAATTCC
129 AAAGACTAAAATACCCTCAAATGATATGACTCATTTTAAATACGGAAGGACATTTCTATAATTTC
* *
13769483 CTAACCAAGTTGGTACTTGGTTAACCCGTGACACCAACTTATTCAAAGATTTGACTCATTTTAAA
194 CTAACCAAGTTGGTACCTGGTTAACCCGTGACACCAACTTAGTCAAAGATTTGACTCATTTTAAA
* * * * * * * *
13769548 AATGAAAAGACATTTCTATAATTTTCTAACCCAATTGGTACCCAGTTAACCTGTGGCACCAATTT
259 AACGAAAAGACATTTCCATAATTTCCTAACCAAATTAGTACCCAGTTAACCTGTGACACCAACTA
* * ** * *
13769613 AGTCAGAGGTTTTATTAATAGTATAAATATACAACTAATGGGGATAATAATTTGTGCATGTTAAA
324 AGTCAGAGGTTTTATTAATAATATAAATATACAACTAATAGAAATAATAACTTGTGCATATTAAA
* *
13769678 ATAAATATGTATAAATATATCAAAATGAAGCTTTAGTTAATTGGTAAATTTAAGATTTTACTAGT
389 ATAAATATGTATAAATACATCAAAATGAAGCTTTAGTTAAGTGGTAAATTTAAGATTTTACTAGT
* * *
13769743 CCAATTGGCTCGGGTTTAAATACAACCATATGCATATTTTAATATTAAAATGAAGATATTAAAAC
454 CCAATTGACTCGAGTTTAAATACAACCATATGCATATTTTAATATTAAAATGAAAATATTAAAAC
** **
13769808 ATTCACAAATATTATAACTTATTAAAATTACAAAAGGACATTTTTTTAATTTTTTAACTGAGTTG
519 ATTCACAAATATTATAACTTATTAAAATTACAAAAGGACATTTTCGTAATTTTTTAACCAAGTTG
* *
13769873 GTGATCCAATTGAAGGTGACATCAAATCAATAAAACACTTAATAAATAGTATAGATATACAACTA
584 GTGAACCAATTGAAGGTGACATC--A-C-----AACACTTAATAAATAGCATAGATATACAACTA
* *
13769938 CTGGAGATAATAAATTGTGC
641 CTAGACATAATAAATTGTGC
* * * **** * **
13769958 ATATTAAAAAATGTATTAAAAAATCAAAATAATGTTTTGGCTGAACAACAAATTTTAGGTTTTAC
1 ATATTAAAAAATGTA-TAAAAAATCAAAATAATGATTTAGTTGAATGGTAAATTTAAAATTTTAC
* *
13770023 TAATCCAATTGACACGAGTTTAAATCCCTTCATATGCATATTTTTCTT-AGTTTTTGTTAAAATA
65 TAATCCAATTG-CACGAGTTTAAATCTCTTTATATGCATATTTTTCTTGA-TTTTTGTTAAAATA
* *
13770087 AAAAGACTAAAATATCCTCAAATCG-TGTGACTCATTTTAAATACGGAAGGACATTTCTATAATT
128 AAAAGACTAAAATACCCTCAAAT-GATATGACTCATTTTAAATACGGAAGGACATTTCTATAATT
* * **
13770151 TCCTAATCGAGTTGGTACCTGGTTAACCCGTGACACCAACTTAGTCAGGGATTTGACTCATTTTA
192 TCCTAACCAAGTTGGTACCTGGTTAACCCGTGACACCAACTTAGTCAAAGATTTGACTCATTTTA
* * **
13770216 AATACGAAACGACATTTCCATAATTTCCTAACCAAATTAGTACCTGGTTAACCTGTGACACACCA
257 AAAACGAAAAGACATTTCCATAATTTCCTAACCAAATTAGTACCCAGTTAACCTGTG--ACACCA
* * * * *
13770281 ACTAAGTTAGGGGTTTTATTAATAATATAGATATCCAGCTAATAGAAATAATAACTTGTGCATAT
320 ACTAAGTCAGAGGTTTTATTAATAATATAAATATACAACTAATAGAAATAATAACTTGTGCATAT
* *
13770346 TAAAATAAA-ATTGTATAAATACATCAAAATGAAG-TTTTGATTGAGTGGTAAATTTAAGA-TTT
385 TAAAATAAATA-TGTATAAATACATCAAAATGAAGCTTTAG-TTAAGTGGTAAATTTAAGATTTT
* * * *
13770408 ACTAGTCCAGTTGACTTGAGTTTAAATCCAACCATTTGCATATTTTAAATGGTTTTTATTAAAAT
448 ACTAGTCCAATTGACTCGAGTTTAAATACAACCATATGCATATTTT-AA-------TATTAAAAT
* * ** *** * *
13770473 GAAAATATTAATATATTCACAAATATTATAACTTATTTTAATTATGGAAGGGCCTTTTCGTAA-T
505 GAAAATATTAAAACATTCACAAATATTATAACTTATTAAAATTACAAAAGGACATTTTCGTAATT
** **
13770537 TTTTAACCAAGTTGGT-AACACGGTTGGGGGTGACA-C-C-A-ACTTAATAAATAGCATAGACAT
570 TTTTAACCAAGTTGGTGAAC-CAATTGAAGGTGACATCACAACACTTAATAAATAGCATAG--AT
**
13770597 ATACAACTGGTAGACATAATAAATTGTGC
632 ATACAACTACTAGACATAATAAATTGTGC
* *
13770626 ATATTAAAAAATGTATAAAAAACATCAAAATAATGCTTTAGTTGAGTGGTAAA-TTAAAATTTTA
1 ATATTAAAAAATGTAT-AAAAA-ATCAAAATAATGATTTAGTTGAATGGTAAATTTAAAATTTTA
* *
13770690 TTTATCCAATTAGCACGAGTTTAAATCTCTTTATATGCATATTTTTCTTGATTTTTGTTAAAATA
64 CTAATCCAATT-GCACGAGTTTAAATCTCTTTATATGCATATTTTTCTTGATTTTTGTTAAAATA
* * *
13770755 AAAA-ACCTAAAATGCCCTCCAATGATATGACTCATTTTAAATATGGAAGGACATTT-TAATAAT
128 AAAAGA-CTAAAATACCCTCAAATGATATGACTCATTTTAAATACGGAAGGACATTTCT-ATAAT
*
13770818 TTCCTAACCAAGATGGTACC
191 TTCCTAACCAAGTTGGTACC
13770838 AAAGTTAGCC
Statistics
Matches: 736, Mismatches: 118, Indels: 54
0.81 0.13 0.06
Matches are distributed among these distances:
666 17 0.02
667 5 0.01
668 181 0.25
669 25 0.03
670 257 0.35
671 54 0.07
672 107 0.15
673 1 0.00
677 3 0.00
678 26 0.04
679 60 0.08
ACGTcount: A:0.39, C:0.13, G:0.13, T:0.36
Consensus pattern (660 bp):
ATATTAAAAAATGTATAAAAAATCAAAATAATGATTTAGTTGAATGGTAAATTTAAAATTTTACT
AATCCAATTGCACGAGTTTAAATCTCTTTATATGCATATTTTTCTTGATTTTTGTTAAAATAAAA
AGACTAAAATACCCTCAAATGATATGACTCATTTTAAATACGGAAGGACATTTCTATAATTTCCT
AACCAAGTTGGTACCTGGTTAACCCGTGACACCAACTTAGTCAAAGATTTGACTCATTTTAAAAA
CGAAAAGACATTTCCATAATTTCCTAACCAAATTAGTACCCAGTTAACCTGTGACACCAACTAAG
TCAGAGGTTTTATTAATAATATAAATATACAACTAATAGAAATAATAACTTGTGCATATTAAAAT
AAATATGTATAAATACATCAAAATGAAGCTTTAGTTAAGTGGTAAATTTAAGATTTTACTAGTCC
AATTGACTCGAGTTTAAATACAACCATATGCATATTTTAATATTAAAATGAAAATATTAAAACAT
TCACAAATATTATAACTTATTAAAATTACAAAAGGACATTTTCGTAATTTTTTAACCAAGTTGGT
GAACCAATTGAAGGTGACATCACAACACTTAATAAATAGCATAGATATACAACTACTAGACATAA
TAAATTGTGC
Found at i:13779058 original size:58 final size:60
Alignment explanation
Indices: 13778925--13779058 Score: 152
Period size: 58 Copynumber: 2.2 Consensus size: 60
13778915 TGATTATCTT
* * *
13778925 AATATTAAATTTAATTTAATATTTATCTTATAGATAAAAATTCTATTAATTTAATAGATTT
1 AATATTAAATTTAATCTAATATTTATCTTATAGATAAAAATTATATTAATTTAATA-ATTA
*
13778986 AATATTAAATTTAATCTAATATTTAT-TT-T-GA-AAAGTATTATATTAATTTAAT-ATTA
1 AATATTAAATTTAATCTAATATTTATCTTATAGATAAA-AATTATATTAATTTAATAATTA
*
13779042 AAGTGATTAAGTTTAAT
1 AA-T-ATTAAATTTAAT
13779059 TATAGTTGAA
Statistics
Matches: 65, Mismatches: 5, Indels: 9
0.82 0.06 0.11
Matches are distributed among these distances:
56 5 0.08
57 4 0.06
58 28 0.43
59 1 0.02
60 2 0.03
61 25 0.38
ACGTcount: A:0.44, C:0.02, G:0.05, T:0.49
Consensus pattern (60 bp):
AATATTAAATTTAATCTAATATTTATCTTATAGATAAAAATTATATTAATTTAATAATTA
Found at i:13779477 original size:12 final size:12
Alignment explanation
Indices: 13779460--13779497 Score: 53
Period size: 12 Copynumber: 3.3 Consensus size: 12
13779450 GCCTAGATAA
13779460 AAAATAAAACAC
1 AAAATAAAACAC
13779472 AAAAT-AAAC-C
1 AAAATAAAACAC
*
13779482 AAAATAAAATAC
1 AAAATAAAACAC
13779494 AAAA
1 AAAA
13779498 GTCCAAATAC
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
10 6 0.26
11 7 0.30
12 10 0.43
ACGTcount: A:0.76, C:0.13, G:0.00, T:0.11
Consensus pattern (12 bp):
AAAATAAAACAC
Found at i:13779541 original size:12 final size:12
Alignment explanation
Indices: 13779500--13779543 Score: 52
Period size: 12 Copynumber: 3.4 Consensus size: 12
13779490 ATACAAAAGT
13779500 CCAAATACCAAGC
1 CCAAATA-CAAGC
*
13779513 CCAAACTTACAAAC
1 CCAAA--TACAAGC
13779527 CCAAATACAAGC
1 CCAAATACAAGC
13779539 CCAAA
1 CCAAA
13779544 AAATTAAAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
12 11 0.41
13 5 0.19
14 9 0.33
15 2 0.07
ACGTcount: A:0.50, C:0.36, G:0.05, T:0.09
Consensus pattern (12 bp):
CCAAATACAAGC
Found at i:13779647 original size:4 final size:4
Alignment explanation
Indices: 13779638--13779750 Score: 54
Period size: 4 Copynumber: 27.8 Consensus size: 4
13779628 TTTTCACTTG
* ** * * *
13779638 TTTA TTTA TTCA -TTA TTCC TTTTA TTTTA TTCA TTCA TTTA TTCA TTTA
1 TTTA TTTA TTTA TTTA TTTA TT-TA TT-TA TTTA TTTA TTTA TTTA TTTA
* * *
13779687 CTTA TTTA TATA -TTA TTTA TTTA TTTA -TTA TTTTAA TCCTTC TTT-
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA -TTT-A T--TTA TTTA
*
13779732 GTTA TTTA TTTA TTTA TTT
1 TTTA TTTA TTTA TTTA TTT
13779751 TTTGATACTT
Statistics
Matches: 83, Mismatches: 17, Indels: 18
0.70 0.14 0.15
Matches are distributed among these distances:
3 9 0.11
4 60 0.72
5 10 0.12
6 2 0.02
7 2 0.02
ACGTcount: A:0.23, C:0.09, G:0.01, T:0.67
Consensus pattern (4 bp):
TTTA
Found at i:13779686 original size:25 final size:25
Alignment explanation
Indices: 13779638--13779686 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 25
13779628 TTTTCACTTG
* *
13779638 TTTATTTATTCATTATTCCTTTTAT
1 TTTATTCATTCATTATTCCATTTAT
13779663 TTTATTCATTCATTTATT-CATTTA
1 TTTATTCATTCA-TTATTCCATTTA
13779687 CTTATTTATA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
25 16 0.76
26 5 0.24
ACGTcount: A:0.22, C:0.12, G:0.00, T:0.65
Consensus pattern (25 bp):
TTTATTCATTCATTATTCCATTTAT
Found at i:13779708 original size:15 final size:15
Alignment explanation
Indices: 13779688--13779719 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
13779678 ATTCATTTAC
13779688 TTATTTATATATTAT
1 TTATTTATATATTAT
*
13779703 TTATTTATTTATTAT
1 TTATTTATATATTAT
13779718 TT
1 TT
13779720 TAATCCTTCT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (15 bp):
TTATTTATATATTAT
Found at i:13782961 original size:11 final size:11
Alignment explanation
Indices: 13782945--13782983 Score: 51
Period size: 11 Copynumber: 3.5 Consensus size: 11
13782935 GAAAGAGAGG
13782945 TTGATTTTTGC
1 TTGATTTTTGC
*
13782956 TTGATTTTAGC
1 TTGATTTTTGC
* *
13782967 TTAATTCTTGC
1 TTGATTTTTGC
13782978 TTGATT
1 TTGATT
13782984 AAAGGAAAAA
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
11 23 1.00
ACGTcount: A:0.15, C:0.10, G:0.15, T:0.59
Consensus pattern (11 bp):
TTGATTTTTGC
Found at i:13785063 original size:20 final size:21
Alignment explanation
Indices: 13785026--13785068 Score: 52
Period size: 20 Copynumber: 2.1 Consensus size: 21
13785016 AATTCTAACT
*
13785026 AAAATGTCCTAAAATAC-AGC
1 AAAATGTACTAAAATACAAGC
* *
13785046 AAAATGTACTTAAGTACAAGC
1 AAAATGTACTAAAATACAAGC
13785067 AA
1 AA
13785069 TTAGCAAGGT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
20 14 0.74
21 5 0.26
ACGTcount: A:0.51, C:0.16, G:0.12, T:0.21
Consensus pattern (21 bp):
AAAATGTACTAAAATACAAGC
Found at i:13787626 original size:41 final size:40
Alignment explanation
Indices: 13787553--13787739 Score: 164
Period size: 40 Copynumber: 4.6 Consensus size: 40
13787543 ACTCAATGTT
* * * **
13787553 TCGCACACTAAATGTCATCGCATAGCCGAAGCTAT-TATAA
1 TCGCACACTAAGTGCCAT-ACATAGCCGAAGCTATCTCCAA
* * *
13787593 TCCCGCACACTAAGTGCCTTACATAGCCAAAGCTATCT-CAGTC
1 T--CGCACACTAAGTGCCATACATAGCCGAAGCTATCTCCA--A
* * *
13787636 TCACACACTAAGTGCCATATATAGCTGAAGCTAT-TCCCAA
1 TCGCACACTAAGTGCCATACATAGCCGAAGCTATCT-CCAA
* *
13787676 TCGCACACTAAGTGCCATAAATAGCCGAAGCTATCTCGAA
1 TCGCACACTAAGTGCCATACATAGCCGAAGCTATCTCCAA
* *
13787716 TCGCACACTAAGTGCTAAACATAG
1 TCGCACACTAAGTGCCATACATAG
13787740 TCGATTAATC
Statistics
Matches: 119, Mismatches: 20, Indels: 16
0.77 0.13 0.10
Matches are distributed among these distances:
40 57 0.48
41 44 0.37
42 17 0.14
43 1 0.01
ACGTcount: A:0.34, C:0.28, G:0.15, T:0.23
Consensus pattern (40 bp):
TCGCACACTAAGTGCCATACATAGCCGAAGCTATCTCCAA
Found at i:13793156 original size:40 final size:40
Alignment explanation
Indices: 13793023--13793157 Score: 155
Period size: 40 Copynumber: 3.4 Consensus size: 40
13793013 TATTATAATC
* * *
13793023 TTGCACACTAAGTGCCTTACATAGCTGAAGCTATC-CCAG
1 TTGCACACTAAGTGCCATAAATAGCCGAAGCTATCTCCAG
* *
13793062 TCTCGCACACTAAGTGCCATATATAGCCGAAGCTATTTCCAG
1 T-T-GCACACTAAGTGCCATAAATAGCCGAAGCTATCTCCAG
** * * *
13793104 TCACACATTAAGTGCCATAAATAGCCGAAGCTATCTCGAA
1 TTGCACACTAAGTGCCATAAATAGCCGAAGCTATCTCCAG
13793144 TTGCACACTAAGTG
1 TTGCACACTAAGTG
13793158 TTAAACATAG
Statistics
Matches: 79, Mismatches: 14, Indels: 5
0.81 0.14 0.05
Matches are distributed among these distances:
39 1 0.01
40 44 0.56
41 29 0.37
42 5 0.06
ACGTcount: A:0.31, C:0.27, G:0.17, T:0.25
Consensus pattern (40 bp):
TTGCACACTAAGTGCCATAAATAGCCGAAGCTATCTCCAG
Found at i:13793699 original size:17 final size:16
Alignment explanation
Indices: 13793673--13793711 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
13793663 AACAAATATC
*
13793673 CATTTTAAATCATCAAA
1 CATTTAAAATC-TCAAA
*
13793690 CATTTAAAATCTTAAA
1 CATTTAAAATCTCAAA
13793706 CATTTA
1 CATTTA
13793712 TCAATGGCAC
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
16 10 0.50
17 10 0.50
ACGTcount: A:0.46, C:0.15, G:0.00, T:0.38
Consensus pattern (16 bp):
CATTTAAAATCTCAAA
Found at i:13799911 original size:14 final size:14
Alignment explanation
Indices: 13799879--13799908 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
13799869 ATTTCAGTAG
13799879 GTTAATTTAAGTTA
1 GTTAATTTAAGTTA
13799893 GTTAATTTAA-TTA
1 GTTAATTTAAGTTA
13799906 GTT
1 GTT
13799909 TAAATAATAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 6 0.38
14 10 0.62
ACGTcount: A:0.33, C:0.00, G:0.13, T:0.53
Consensus pattern (14 bp):
GTTAATTTAAGTTA
Found at i:13802758 original size:21 final size:21
Alignment explanation
Indices: 13802723--13802762 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 21
13802713 AGTTATTTAA
*
13802723 TTTTTTGTTTCTTATTATTACT
1 TTTTTTATTTCTTA-TATTACT
13802745 TTTTTTATTT-TTATATTA
1 TTTTTTATTTCTTATATTA
13802763 ATGTATAAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 5 0.29
21 3 0.18
22 9 0.53
ACGTcount: A:0.17, C:0.05, G:0.03, T:0.75
Consensus pattern (21 bp):
TTTTTTATTTCTTATATTACT
Found at i:13807325 original size:50 final size:49
Alignment explanation
Indices: 13807244--13807535 Score: 259
Period size: 50 Copynumber: 5.9 Consensus size: 49
13807234 CATTTGGGTA
* * * * *
13807244 AAGAGATCACATGTAAGACCATGTCCGGGACATGGCATTGGCAGCAAGAT
1 AAGAGGTCCCATGTAAGACCATAT-CTGGACATGGCATTGGCACCAAGAT
* * *
13807294 AAGAGGTCCCATGTAAGACTACATAT-AGGACATGGCGTTGGCACCGAGAT
1 AAGAGGTCCCATGTAAGAC--CATATCTGGACATGGCATTGGCACCAAGAT
* *
13807344 AAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGAT
1 AAGAGGTCCCATGTAAGACCATATCT-GGACATGGCATTGGCACCAAGAT
* ** * * *
13807394 GAGAGGTCCCCCGTAAGACCATGTCTGGAACATGGCATGGGCACCAATAT
1 AAGAGGTCCCATGTAAGACCATATCTGG-ACATGGCATTGGCACCAAGAT
** * * *
13807444 AAGAACTCCCATGTAAGACCATATCTGAGATATGGCATTGGCAGTACAGGA-
1 AAGAGGTCCCATGTAAGACCATATCTG-GACATGGCATTGGCA--CCAAGAT
* * *
13807495 AACA--TCCCATGTAAGACCATGTCTGGGACATGGCTTTGGCA
1 AAGAGGTCCCATGTAAGACCATATCT-GGACATGGCATTGGCA
13807536 TATTATTATC
Statistics
Matches: 202, Mismatches: 31, Indels: 19
0.80 0.12 0.08
Matches are distributed among these distances:
48 4 0.02
49 34 0.17
50 153 0.76
51 4 0.02
52 7 0.03
ACGTcount: A:0.31, C:0.22, G:0.27, T:0.20
Consensus pattern (49 bp):
AAGAGGTCCCATGTAAGACCATATCTGGACATGGCATTGGCACCAAGAT
Found at i:13809402 original size:12 final size:12
Alignment explanation
Indices: 13809385--13809414 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
13809375 TCAGGCTATT
13809385 ACACGGCCTAGC
1 ACACGGCCTAGC
*
13809397 ACACGGCCTGGC
1 ACACGGCCTAGC
13809409 ACACGG
1 ACACGG
13809415 GCGTGTGAGG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.23, C:0.40, G:0.30, T:0.07
Consensus pattern (12 bp):
ACACGGCCTAGC
Found at i:13810415 original size:9 final size:9
Alignment explanation
Indices: 13810401--13810427 Score: 54
Period size: 9 Copynumber: 3.0 Consensus size: 9
13810391 TCACCGACAG
13810401 AATGTGTCA
1 AATGTGTCA
13810410 AATGTGTCA
1 AATGTGTCA
13810419 AATGTGTCA
1 AATGTGTCA
13810428 TATCTCTATT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 18 1.00
ACGTcount: A:0.33, C:0.11, G:0.22, T:0.33
Consensus pattern (9 bp):
AATGTGTCA
Found at i:13816662 original size:30 final size:30
Alignment explanation
Indices: 13816628--13816687 Score: 102
Period size: 30 Copynumber: 2.0 Consensus size: 30
13816618 ACTTATTTTA
*
13816628 TTGTTAATTTTGTTATTATTTTAAAGGCAT
1 TTGTTAAATTTGTTATTATTTTAAAGGCAT
*
13816658 TTGTTAAATTTGTTATTATTTTAGAGGCAT
1 TTGTTAAATTTGTTATTATTTTAAAGGCAT
13816688 ATGCTTGTTA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.27, C:0.03, G:0.15, T:0.55
Consensus pattern (30 bp):
TTGTTAAATTTGTTATTATTTTAAAGGCAT
Found at i:13824456 original size:34 final size:34
Alignment explanation
Indices: 13824414--13824491 Score: 120
Period size: 34 Copynumber: 2.3 Consensus size: 34
13824404 GTAGGTGCAT
* *
13824414 ATATAATATTAATATGTGTGCATGGTTTTGTTAC
1 ATATAATATAAATATGGGTGCATGGTTTTGTTAC
* *
13824448 ATATAATATAAATATGGGTGTATGGTTTTGTTAT
1 ATATAATATAAATATGGGTGCATGGTTTTGTTAC
13824482 ATATAATATA
1 ATATAATATA
13824492 TATGCGTGAG
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
34 40 1.00
ACGTcount: A:0.35, C:0.03, G:0.17, T:0.46
Consensus pattern (34 bp):
ATATAATATAAATATGGGTGCATGGTTTTGTTAC
Found at i:13824504 original size:29 final size:31
Alignment explanation
Indices: 13824412--13824526 Score: 99
Period size: 34 Copynumber: 3.5 Consensus size: 31
13824402 TGGTAGGTGC
* *
13824412 ATATATAATATTAATATGTGTGCATGGTTTTGTT
1 ATATATAATA-T-ATATGCGTGTA-GGTTTTGTT
* *
13824446 ACATATAATATAAATATGGGTGTATGGTTTTGTT
1 ATATATAATAT--ATATGCGTGTA-GGTTTTGTT
13824480 ATATATAATATATATGCGTG-A-GTTTCGTGTT
1 ATATATAATATATATGCGTGTAGGTTT--TGTT
*
13824511 ATATGTAATATATATG
1 ATATATAATATATATG
13824527 TATATGGTTA
Statistics
Matches: 72, Mismatches: 6, Indels: 9
0.83 0.07 0.10
Matches are distributed among these distances:
29 4 0.06
31 20 0.28
32 8 0.11
33 1 0.01
34 39 0.54
ACGTcount: A:0.32, C:0.03, G:0.18, T:0.46
Consensus pattern (31 bp):
ATATATAATATATATGCGTGTAGGTTTTGTT
Found at i:13824824 original size:36 final size:36
Alignment explanation
Indices: 13824765--13824847 Score: 87
Period size: 36 Copynumber: 2.3 Consensus size: 36
13824755 ATTGTGAATC
* * *
13824765 GTGTTAACTTGGCGAATTATATTATTAT-AGCGAACT
1 GTGTTAATTTGGCGAATTATATTAATATGA-CAAACT
* * *
13824801 GTGTTAATTTGGTGATTTGTATTAATATGACAAACT
1 GTGTTAATTTGGCGAATTATATTAATATGACAAACT
*
13824837 GTATTAATTTG
1 GTGTTAATTTG
13824848 CCAAACTGCG
Statistics
Matches: 39, Mismatches: 7, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
36 38 0.97
37 1 0.03
ACGTcount: A:0.30, C:0.07, G:0.19, T:0.43
Consensus pattern (36 bp):
GTGTTAATTTGGCGAATTATATTAATATGACAAACT
Found at i:13824839 original size:18 final size:18
Alignment explanation
Indices: 13824818--13824855 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
13824808 TTTGGTGATT
13824818 TGTATTAATATGACAAAC
1 TGTATTAATATGACAAAC
* *
13824836 TGTATTAATTTGCCAAAC
1 TGTATTAATATGACAAAC
13824854 TG
1 TG
13824856 CGGATTGTGA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.37, C:0.13, G:0.13, T:0.37
Consensus pattern (18 bp):
TGTATTAATATGACAAAC
Found at i:13825495 original size:17 final size:16
Alignment explanation
Indices: 13825475--13825522 Score: 51
Period size: 17 Copynumber: 2.9 Consensus size: 16
13825465 TATGATGGAG
13825475 TATGAACTATTATTCAA
1 TATGAACTATTATTC-A
* *
13825492 TATGGACTAATATTTCA
1 TATGAACTATTA-TTCA
*
13825509 TATAAACTATTATT
1 TATGAACTATTATT
13825523 TTGCATGAGT
Statistics
Matches: 25, Mismatches: 5, Indels: 3
0.76 0.15 0.09
Matches are distributed among these distances:
16 2 0.08
17 20 0.80
18 3 0.12
ACGTcount: A:0.40, C:0.10, G:0.06, T:0.44
Consensus pattern (16 bp):
TATGAACTATTATTCA
Found at i:13841135 original size:14 final size:14
Alignment explanation
Indices: 13841118--13841144 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
13841108 ACAAATTTGG
13841118 CTATACTAAAATGC
1 CTATACTAAAATGC
13841132 CTATACTAAAATG
1 CTATACTAAAATG
13841145 AGTGTGCTTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.44, C:0.19, G:0.07, T:0.30
Consensus pattern (14 bp):
CTATACTAAAATGC
Found at i:13856995 original size:13 final size:13
Alignment explanation
Indices: 13856977--13857001 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
13856967 ATTTTTTAGG
13856977 TCATTTTCATTTT
1 TCATTTTCATTTT
13856990 TCATTTTCATTT
1 TCATTTTCATTT
13857002 AGGAGAAAAC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.16, G:0.00, T:0.68
Consensus pattern (13 bp):
TCATTTTCATTTT
Found at i:13866502 original size:30 final size:30
Alignment explanation
Indices: 13866463--13866519 Score: 73
Period size: 30 Copynumber: 1.9 Consensus size: 30
13866453 TTTTATAAAT
13866463 AATTAATATTT-AT-TACTTAAAAATATTTAA
1 AATTAATATTTCATATA-TT-AAAATATTTAA
*
13866493 AATTTATATTTCATATATTAAAATATT
1 AATTAATATTTCATATATTAAAATATT
13866520 AACAATAAGT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
30 18 0.75
31 4 0.17
32 2 0.08
ACGTcount: A:0.47, C:0.04, G:0.00, T:0.49
Consensus pattern (30 bp):
AATTAATATTTCATATATTAAAATATTTAA
Found at i:13866841 original size:21 final size:21
Alignment explanation
Indices: 13866817--13866859 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 21
13866807 TTCAATATCC
*
13866817 TTAAT-AAAGAAATAAAACAAA
1 TTAATCAAAG-AATAAAAAAAA
*
13866838 TTAATCATAGAATAAAAAAAA
1 TTAATCAAAGAATAAAAAAAA
13866859 T
1 T
13866860 CTCAATATAA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
21 16 0.84
22 3 0.16
ACGTcount: A:0.67, C:0.05, G:0.05, T:0.23
Consensus pattern (21 bp):
TTAATCAAAGAATAAAAAAAA
Found at i:13877453 original size:14 final size:14
Alignment explanation
Indices: 13877434--13877461 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
13877424 AAAGTGGATT
13877434 CAAATGTGGTGATA
1 CAAATGTGGTGATA
13877448 CAAATGTGGTGATA
1 CAAATGTGGTGATA
13877462 GAGGTGGAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.36, C:0.07, G:0.29, T:0.29
Consensus pattern (14 bp):
CAAATGTGGTGATA
Found at i:13890134 original size:14 final size:15
Alignment explanation
Indices: 13890110--13890138 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
13890100 TGGTTGAATG
13890110 GAAATTTGGTCATTT
1 GAAATTTGGTCATTT
13890125 GAAA-TTGGTCATTT
1 GAAATTTGGTCATTT
13890139 TATGCATGTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 10 0.71
15 4 0.29
ACGTcount: A:0.28, C:0.07, G:0.21, T:0.45
Consensus pattern (15 bp):
GAAATTTGGTCATTT
Found at i:13899650 original size:26 final size:27
Alignment explanation
Indices: 13899621--13899680 Score: 113
Period size: 27 Copynumber: 2.3 Consensus size: 27
13899611 AATTTTCTCG
13899621 AAATTTTATCGAG-GGTAAAATCGTCA
1 AAATTTTATCGAGTGGTAAAATCGTCA
13899647 AAATTTTATCGAGTGGTAAAATCGTCA
1 AAATTTTATCGAGTGGTAAAATCGTCA
13899674 AAATTTT
1 AAATTTT
13899681 GCTAGAGTAA
Statistics
Matches: 33, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
26 13 0.39
27 20 0.61
ACGTcount: A:0.38, C:0.10, G:0.17, T:0.35
Consensus pattern (27 bp):
AAATTTTATCGAGTGGTAAAATCGTCA
Found at i:13901237 original size:11 final size:12
Alignment explanation
Indices: 13901212--13901237 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
13901202 TGTAATGGAC
13901212 TTTTTAAGGATT
1 TTTTTAAGGATT
13901224 TTTTTAAGGATT
1 TTTTTAAGGATT
13901236 TT
1 TT
13901238 ATATCTAGTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.23, C:0.00, G:0.15, T:0.62
Consensus pattern (12 bp):
TTTTTAAGGATT
Found at i:13907418 original size:12 final size:12
Alignment explanation
Indices: 13907401--13907431 Score: 53
Period size: 12 Copynumber: 2.5 Consensus size: 12
13907391 AAAGAGGTTT
13907401 CCTTTTGTCTCA
1 CCTTTTGTCTCA
13907413 CCTTTTGTCTCA
1 CCTTTTGTCTCA
13907425 CACTTTT
1 C-CTTTT
13907432 TCCCTTTGCA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 13 0.72
13 5 0.28
ACGTcount: A:0.10, C:0.32, G:0.06, T:0.52
Consensus pattern (12 bp):
CCTTTTGTCTCA
Found at i:13909914 original size:25 final size:25
Alignment explanation
Indices: 13909862--13909982 Score: 86
Period size: 25 Copynumber: 4.8 Consensus size: 25
13909852 CTCTCTCTTT
*
13909862 AGCCATATAACGGGAAGCTCATGTG
1 AGCCATATAACAGGAAGCTCATGTG
*
13909887 AGCCATGTAACAGGAAGCTCAT-TCG
1 AGCCATATAACAGGAAGCTCATGT-G
** * * **
13909912 AGCTGTATAACAAGAAGATCATAAG
1 AGCCATATAACAGGAAGCTCATGTG
**
13909937 AGCCATA-ATTAGGAAGCTCATGAATG
1 AGCCATATAACAGGAAGCTCATG--TG
*
13909963 AGCC-TTTAATCAGGAAGCTC
1 AGCCATATAA-CAGGAAGCTC
13909983 CAAAGAGCCA
Statistics
Matches: 71, Mismatches: 19, Indels: 10
0.71 0.19 0.10
Matches are distributed among these distances:
24 11 0.15
25 45 0.63
26 6 0.08
27 9 0.13
ACGTcount: A:0.36, C:0.19, G:0.23, T:0.21
Consensus pattern (25 bp):
AGCCATATAACAGGAAGCTCATGTG
Found at i:13914314 original size:19 final size:20
Alignment explanation
Indices: 13914272--13914314 Score: 61
Period size: 20 Copynumber: 2.2 Consensus size: 20
13914262 GGGTATTTCA
13914272 AAAACTATGAGGGAATACCC
1 AAAACTATGAGGGAATACCC
* *
13914292 AAAATTATGATGGAATA-CC
1 AAAACTATGAGGGAATACCC
13914311 AAAA
1 AAAA
13914315 GTCACGAGGA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 6 0.29
20 15 0.71
ACGTcount: A:0.51, C:0.14, G:0.16, T:0.19
Consensus pattern (20 bp):
AAAACTATGAGGGAATACCC
Found at i:13914391 original size:20 final size:20
Alignment explanation
Indices: 13914347--13914391 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
13914337 AAGAAGTACT
* * *
13914347 AAAAATTATAAGGGAATATA
1 AAAAATTACAACGGAATAAA
13914367 AAAAATTACAACGGAATAAA
1 AAAAATTACAACGGAATAAA
13914387 AAAAA
1 AAAAA
13914392 CTTTTTAGAA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.67, C:0.04, G:0.11, T:0.18
Consensus pattern (20 bp):
AAAAATTACAACGGAATAAA
Found at i:13914457 original size:20 final size:20
Alignment explanation
Indices: 13914414--13914458 Score: 56
Period size: 20 Copynumber: 2.2 Consensus size: 20
13914404 AAAATGTAAT
* *
13914414 ATTTTTTATTTCAAAAATTT
1 ATTTTTTATGTCAAAAATTA
13914434 ATTTTTTATGTCAAAAGA-TA
1 ATTTTTTATGTCAAAA-ATTA
13914454 ATTTT
1 ATTTT
13914459 AGAAACATAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
20 21 0.95
21 1 0.05
ACGTcount: A:0.36, C:0.04, G:0.04, T:0.56
Consensus pattern (20 bp):
ATTTTTTATGTCAAAAATTA
Found at i:13920187 original size:50 final size:50
Alignment explanation
Indices: 13920126--13920318 Score: 244
Period size: 51 Copynumber: 3.8 Consensus size: 50
13920116 ATTATTATCA
* * *
13920126 TTCGATACACGTAGTAGCCTTCACATAGTACTACACACGTGATCAAACTT
1 TTCGATACACATAGTAGCCTGCACATAGTACTACACACGTGACCAAACTT
* * *
13920176 TTCGATTCACGTAGTAGCCTGCACATAGTACTACACACGTGACCAAAGCCT
1 TTCGATACACATAGTAGCCTGCACATAGTACTACACACGTGACCAAA-CTT
* * * *
13920227 TCCGGTACACATAGTAGCCTGCACATAGTACTACACATGTGACCATTA-TCT
1 TTCGATACACATAGTAGCCTGCACATAGTACTACACACGTGACCA-AACT-T
* *
13920278 ATCGATACACATAGTAGCCTGCACTTAGTACTACACACGTG
1 TTCGATACACATAGTAGCCTGCACATAGTACTACACACGTG
13920319 TTTATAGGCA
Statistics
Matches: 124, Mismatches: 16, Indels: 5
0.86 0.11 0.03
Matches are distributed among these distances:
50 44 0.35
51 79 0.64
52 1 0.01
ACGTcount: A:0.31, C:0.27, G:0.16, T:0.26
Consensus pattern (50 bp):
TTCGATACACATAGTAGCCTGCACATAGTACTACACACGTGACCAAACTT
Found at i:13920264 original size:26 final size:26
Alignment explanation
Indices: 13920232--13920314 Score: 68
Period size: 26 Copynumber: 3.2 Consensus size: 26
13920222 AGCCTTCCGG
13920232 TACACATAGTAGCCTGCACATAGTAC
1 TACACATAGTAGCCTGCACATAGTAC
* *
13920258 TACACAT-GT-GACCAT-TATCTATCG-A-
1 TACACATAGTAG-CC-TGCA-C-ATAGTAC
*
13920283 TACACATAGTAGCCTGCACTTAGTAC
1 TACACATAGTAGCCTGCACATAGTAC
13920309 TACACA
1 TACACA
13920315 CGTGTTTATA
Statistics
Matches: 43, Mismatches: 5, Indels: 18
0.65 0.08 0.27
Matches are distributed among these distances:
24 3 0.07
25 15 0.35
26 21 0.49
27 4 0.09
ACGTcount: A:0.34, C:0.27, G:0.13, T:0.27
Consensus pattern (26 bp):
TACACATAGTAGCCTGCACATAGTAC
Found at i:13920314 original size:102 final size:101
Alignment explanation
Indices: 13920131--13920318 Score: 270
Period size: 102 Copynumber: 1.9 Consensus size: 101
13920121 TATCATTCGA
* * * * * *
13920131 TACACGTAGTAGCCTTCACATAGTACTACACACGTGATCAAACTTTTCGATTCACGTAGTAGCCT
1 TACACATAGTAGCCTGCACATAGTACTACACACGTGACCAAACTTATCGATACACATAGTAGCCT
13920196 GCACATAGTACTACACACGTGACCAAAGCCTTCCGG
66 GCACATAGTACTACACACGTGACCAAAGCCTTCCGG
* *
13920232 TACACATAGTAGCCTGCACATAGTACTACACATGTGACCATTA-TCTATCGATACACATAGTAGC
1 TACACATAGTAGCCTGCACATAGTACTACACACGTGACCA-AACT-TATCGATACACATAGTAGC
*
13920296 CTGCACTTAGTACTACACACGTG
64 CTGCACATAGTACTACACACGTG
13920319 TTTATAGGCA
Statistics
Matches: 76, Mismatches: 9, Indels: 3
0.86 0.10 0.03
Matches are distributed among these distances:
101 37 0.49
102 39 0.51
ACGTcount: A:0.31, C:0.28, G:0.16, T:0.26
Consensus pattern (101 bp):
TACACATAGTAGCCTGCACATAGTACTACACACGTGACCAAACTTATCGATACACATAGTAGCCT
GCACATAGTACTACACACGTGACCAAAGCCTTCCGG
Found at i:13925470 original size:40 final size:40
Alignment explanation
Indices: 13925426--13925508 Score: 166
Period size: 40 Copynumber: 2.1 Consensus size: 40
13925416 GTAACGTGAG
13925426 GTTTATCAACCCTTTCCTATGCCTTATATATGTTTATTTA
1 GTTTATCAACCCTTTCCTATGCCTTATATATGTTTATTTA
13925466 GTTTATCAACCCTTTCCTATGCCTTATATATGTTTATTTA
1 GTTTATCAACCCTTTCCTATGCCTTATATATGTTTATTTA
13925506 GTT
1 GTT
13925509 AAATTGTCTC
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 43 1.00
ACGTcount: A:0.22, C:0.19, G:0.08, T:0.51
Consensus pattern (40 bp):
GTTTATCAACCCTTTCCTATGCCTTATATATGTTTATTTA
Done.