Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr08 ID=Chr08-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 57128820
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 677448 characters in sequence are not A, C, G, or T
File 51 of 190
Found at i:14479104 original size:147 final size:148
Alignment explanation
Indices: 14478805--14479106 Score: 434
Period size: 147 Copynumber: 2.1 Consensus size: 148
14478795 AATGTTTTAT
*
14478805 TTTTTTATGTAATTTATTTGTCATGTGTGTTTTAGGTTTATTAGATTTAATTTTTATGTAATTTA
1 TTTTTTATGTAATTTATTTGTCATGTGTGTTTTAGATTTATTAGATTTAATTTTTATGTAATTTA
* * ** *
14478870 TTTTTCATATGTGTTTTAGGTTTATTAGATTTATTATTTATGTAATTTATTTTTCATGTGTGTTT
66 TTTATCATATGTGTTTTAAGTTTATTAGATTTATTATTTATGTAATTTATTTGGCATGTGTATTT
*
14478935 TAGATTAATTAGATTTAA
131 TAGATTAATTAGATTAAA
* *
14478953 -TTTTTATGTAATTTATTTTTCATGTGTGTTTTAGATTTATTAGATTTAATTTTTTTGTAATTTA
1 TTTTTTATGTAATTTATTTGTCATGTGTGTTTTAGATTTATTAGATTTAATTTTTATGTAATTTA
*
14479017 -TTATCATATGTGTTTTAAGTTTATTAGATTTATTTTTTTATGTAATTTATTTGGCATGT-TATT
66 TTTATCATATGTGTTTTAAGTTTATTAGATTTA-TTATTTATGTAATTTATTTGGCATGTGTATT
* *
14479080 TT-TATTATTTTA-ATATAAA
130 TTAGATTA-ATTAGAT-TAAA
14479099 TTTTTTAT
1 TTTTTTAT
14479107 TTCTTATGTA
Statistics
Matches: 138, Mismatches: 12, Indels: 9
0.87 0.08 0.06
Matches are distributed among these distances:
145 6 0.04
146 41 0.30
147 91 0.66
ACGTcount: A:0.25, C:0.02, G:0.12, T:0.62
Consensus pattern (148 bp):
TTTTTTATGTAATTTATTTGTCATGTGTGTTTTAGATTTATTAGATTTAATTTTTATGTAATTTA
TTTATCATATGTGTTTTAAGTTTATTAGATTTATTATTTATGTAATTTATTTGGCATGTGTATTT
TAGATTAATTAGATTAAA
Found at i:14480239 original size:39 final size:39
Alignment explanation
Indices: 14480185--14480260 Score: 152
Period size: 39 Copynumber: 1.9 Consensus size: 39
14480175 CGGGAGTGCT
14480185 GTAACGGGCGTAAGTACGATATCTGAGCCATCCGCCCCC
1 GTAACGGGCGTAAGTACGATATCTGAGCCATCCGCCCCC
14480224 GTAACGGGCGTAAGTACGATATCTGAGCCATCCGCCC
1 GTAACGGGCGTAAGTACGATATCTGAGCCATCCGCCC
14480261 TTTGTTATAG
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 37 1.00
ACGTcount: A:0.24, C:0.32, G:0.26, T:0.18
Consensus pattern (39 bp):
GTAACGGGCGTAAGTACGATATCTGAGCCATCCGCCCCC
Found at i:14480746 original size:14 final size:14
Alignment explanation
Indices: 14480727--14480760 Score: 68
Period size: 14 Copynumber: 2.4 Consensus size: 14
14480717 CATATTTTTT
14480727 TTCTAATGATACTA
1 TTCTAATGATACTA
14480741 TTCTAATGATACTA
1 TTCTAATGATACTA
14480755 TTCTAA
1 TTCTAA
14480761 CATGTAATTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.35, C:0.15, G:0.06, T:0.44
Consensus pattern (14 bp):
TTCTAATGATACTA
Found at i:14481976 original size:49 final size:49
Alignment explanation
Indices: 14481905--14482090 Score: 252
Period size: 49 Copynumber: 3.8 Consensus size: 49
14481895 GTATTTATTT
* * *
14481905 AATTAGATTA-ATTGCAATATTAAAACTTGGAACAAACTTTGTGGTCATA
1 AATTAGA-TACATTACAACATTAAAACTTGGAACAAACTTTGTGATCATA
14481954 AATTAGATACATTACAACATTAAAACTTGGAACAAACTTTGTGATCATA
1 AATTAGATACATTACAACATTAAAACTTGGAACAAACTTTGTGATCATA
* * ** *
14482003 AATTAGATGCATTACAACATTAAAACTTGGAACAGACTCCGTAAT-ATA
1 AATTAGATACATTACAACATTAAAACTTGGAACAAACTTTGTGATCATA
**
14482051 AATTAGATACATTACAACATTAAAACGAGGAAC-AACTTTG
1 AATTAGATACATTACAACATTAAAACTTGGAACAAACTTTG
14482091 CAATTTAAAT
Statistics
Matches: 122, Mismatches: 14, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
47 4 0.03
48 35 0.29
49 83 0.68
ACGTcount: A:0.44, C:0.14, G:0.12, T:0.30
Consensus pattern (49 bp):
AATTAGATACATTACAACATTAAAACTTGGAACAAACTTTGTGATCATA
Found at i:14482071 original size:48 final size:49
Alignment explanation
Indices: 14481905--14482111 Score: 251
Period size: 49 Copynumber: 4.3 Consensus size: 49
14481895 GTATTTATTT
* * **
14481905 AATTAGATTA-ATTGCAATATTAAAACTTGGAACAAACTTTGTGGTCATA
1 AATTAGA-TACATTACAACATTAAAACTTGGAACAAACTTTGTAATCATA
*
14481954 AATTAGATACATTACAACATTAAAACTTGGAACAAACTTTGTGATCATA
1 AATTAGATACATTACAACATTAAAACTTGGAACAAACTTTGTAATCATA
* * **
14482003 AATTAGATGCATTACAACATTAAAACTTGGAACAGACTCCGTAAT-ATA
1 AATTAGATACATTACAACATTAAAACTTGGAACAAACTTTGTAATCATA
** * *
14482051 AATTAGATACATTACAACATTAAAACGAGGAAC-AACTTTGCAAT-TTA
1 AATTAGATACATTACAACATTAAAACTTGGAACAAACTTTGTAATCATA
*
14482098 AATTAGGTACATTA
1 AATTAGATACATTA
14482112 GATTACATAA
Statistics
Matches: 140, Mismatches: 17, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
47 22 0.16
48 35 0.25
49 83 0.59
ACGTcount: A:0.44, C:0.14, G:0.12, T:0.30
Consensus pattern (49 bp):
AATTAGATACATTACAACATTAAAACTTGGAACAAACTTTGTAATCATA
Found at i:14485679 original size:101 final size:102
Alignment explanation
Indices: 14485564--14485750 Score: 324
Period size: 101 Copynumber: 1.8 Consensus size: 102
14485554 AAAGTGGTGG
* *
14485564 TCACGTGTGTAGTACTATGTGCCGGCTACTACGTGTACCAGA-A-TGATAGGTCACATGTGTAGT
1 TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCAGATAGTGAT-GGTCACATGTATAGT
14485627 ACTATGTGCAGGCTACTATGTGTACTGGATAGCTTCGA
65 ACTATGTGCAGGCTACTATGTGTACTGGATAGCTTCGA
*
14485665 TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTATCAGATAGTGATGGTCACATGTATAGTA
1 TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCAGATAGTGATGGTCACATGTATAGTA
14485730 CTATGTGCAGGCTACTATGTG
66 CTATGTGCAGGCTACTATGTG
14485751 AACCGGTATC
Statistics
Matches: 81, Mismatches: 3, Indels: 3
0.93 0.03 0.03
Matches are distributed among these distances:
101 40 0.49
102 37 0.46
103 4 0.05
ACGTcount: A:0.24, C:0.18, G:0.27, T:0.32
Consensus pattern (102 bp):
TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCAGATAGTGATGGTCACATGTATAGTA
CTATGTGCAGGCTACTATGTGTACTGGATAGCTTCGA
Found at i:14485685 original size:51 final size:49
Alignment explanation
Indices: 14485561--14485746 Score: 214
Period size: 51 Copynumber: 3.7 Consensus size: 49
14485551 GTGAAAGTGG
* * *
14485561 TGGTCACGTGTGTAGTACTATGTGCCGGCTACTACGTGTACCAGA-ATGAT
1 TGGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACTAGATA-G-T
* * *
14485611 AGGTCACATGTGTAGTACTATGTGCAGGCTACTATGTGTACTGGATAGCT
1 TGGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACTAGATAG-T
* *
14485661 TCGATCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTA-TCAGATAGT
1 T-GGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACT-AGATAGT
*
14485711 GATGGTCACATGTATAGTACTATGTGCAGGCTACTA
1 --TGGTCACATGTGTAGTACTATGTGCAGGCTACTA
14485747 TGTGAACCGG
Statistics
Matches: 116, Mismatches: 15, Indels: 9
0.83 0.11 0.06
Matches are distributed among these distances:
50 43 0.37
51 72 0.62
52 1 0.01
ACGTcount: A:0.24, C:0.18, G:0.27, T:0.31
Consensus pattern (49 bp):
TGGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACTAGATAGT
Found at i:14485814 original size:44 final size:45
Alignment explanation
Indices: 14485752--14485836 Score: 120
Period size: 46 Copynumber: 1.9 Consensus size: 45
14485742 TACTATGTGA
14485752 ACCGGTATCATTAATTAT-AA-GGTGGTTGCTACGTGCTGATCCC
1 ACCGGTATCATTAATTATAAAGGGTGGTTGCTACGTGCTGATCCC
* **
14485795 ACCGGATATCATTGATTATAAAGGGTGGTTGCTGTGTGCTGA
1 ACCGG-TATCATTAATTATAAAGGGTGGTTGCTACGTGCTGA
14485837 ATCCACTGTG
Statistics
Matches: 36, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
43 5 0.14
44 12 0.33
45 2 0.06
46 17 0.47
ACGTcount: A:0.24, C:0.16, G:0.27, T:0.33
Consensus pattern (45 bp):
ACCGGTATCATTAATTATAAAGGGTGGTTGCTACGTGCTGATCCC
Found at i:14486009 original size:15 final size:16
Alignment explanation
Indices: 14485975--14486010 Score: 56
Period size: 16 Copynumber: 2.3 Consensus size: 16
14485965 TGATTGAAAG
*
14485975 TGAAAAAGTGAAATTA
1 TGAAAAAGTAAAATTA
14485991 TGAAAAAGTAAAATT-
1 TGAAAAAGTAAAATTA
14486006 TGAAA
1 TGAAA
14486011 CAGAACAGAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 5 0.26
16 14 0.74
ACGTcount: A:0.58, C:0.00, G:0.17, T:0.25
Consensus pattern (16 bp):
TGAAAAAGTAAAATTA
Found at i:14506735 original size:9 final size:9
Alignment explanation
Indices: 14506721--14506751 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
14506711 GTTAAATGAA
14506721 TCGAGTTAT
1 TCGAGTTAT
*
14506730 TCGAGTTAA
1 TCGAGTTAT
14506739 TCGAGTTAT
1 TCGAGTTAT
14506748 TCGA
1 TCGA
14506752 ATCAACTCGA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.26, C:0.13, G:0.23, T:0.39
Consensus pattern (9 bp):
TCGAGTTAT
Found at i:14506821 original size:9 final size:9
Alignment explanation
Indices: 14506804--14506840 Score: 56
Period size: 9 Copynumber: 4.1 Consensus size: 9
14506794 TGAGTTTTCG
14506804 AATTCGAAT
1 AATTCGAAT
*
14506813 AACTCGAAT
1 AATTCGAAT
*
14506822 AATTCAAAT
1 AATTCGAAT
14506831 AATTCGAAT
1 AATTCGAAT
14506840 A
1 A
14506841 TCAAACTATA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
9 24 1.00
ACGTcount: A:0.49, C:0.14, G:0.08, T:0.30
Consensus pattern (9 bp):
AATTCGAAT
Found at i:14507762 original size:5 final size:5
Alignment explanation
Indices: 14507752--14507798 Score: 51
Period size: 5 Copynumber: 9.2 Consensus size: 5
14507742 GAACAAATAT
* *
14507752 ATTCG ATTCG ATTCG ATTCG AATTCA ATCTC- ACTCG ATTCG ATTCG A
1 ATTCG ATTCG ATTCG ATTCG -ATTCG AT-TCG ATTCG ATTCG ATTCG A
14507799 GAAAACTTCA
Statistics
Matches: 36, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
4 2 0.06
5 28 0.78
6 6 0.17
ACGTcount: A:0.26, C:0.23, G:0.15, T:0.36
Consensus pattern (5 bp):
ATTCG
Found at i:14515131 original size:25 final size:26
Alignment explanation
Indices: 14515097--14515147 Score: 70
Period size: 25 Copynumber: 2.0 Consensus size: 26
14515087 TTAGATAAGA
*
14515097 ACTTTCTGAAAA-G-ATTGTAGTTAGT
1 ACTTTATGAAAATGTATTG-AGTTAGT
14515122 ACTTTATGAAAATGTATTGAGTTAGT
1 ACTTTATGAAAATGTATTGAGTTAGT
14515148 TAGAGATTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
25 11 0.48
26 8 0.35
27 4 0.17
ACGTcount: A:0.33, C:0.06, G:0.20, T:0.41
Consensus pattern (26 bp):
ACTTTATGAAAATGTATTGAGTTAGT
Found at i:14520706 original size:17 final size:17
Alignment explanation
Indices: 14520684--14520722 Score: 53
Period size: 17 Copynumber: 2.3 Consensus size: 17
14520674 AATCTAGGTG
14520684 TGTGGG-CCACACGGGCA
1 TGTGGGTCCACACGGG-A
*
14520701 TGTGGGTCCACATGGGA
1 TGTGGGTCCACACGGGA
14520718 TGTGG
1 TGTGG
14520723 CCCATAATTC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
17 12 0.60
18 8 0.40
ACGTcount: A:0.15, C:0.21, G:0.44, T:0.21
Consensus pattern (17 bp):
TGTGGGTCCACACGGGA
Found at i:14526208 original size:12 final size:12
Alignment explanation
Indices: 14526183--14526221 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
14526173 ACTCGCTTCT
* *
14526183 TTACTTACTCAC
1 TTACTTGCTTAC
*
14526195 TTACTTGTTTAC
1 TTACTTGCTTAC
14526207 TTACTTGCTTAC
1 TTACTTGCTTAC
14526219 TTA
1 TTA
14526222 AATAACTCAT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.21, C:0.23, G:0.05, T:0.51
Consensus pattern (12 bp):
TTACTTGCTTAC
Found at i:14526538 original size:50 final size:51
Alignment explanation
Indices: 14526473--14526662 Score: 190
Period size: 50 Copynumber: 3.7 Consensus size: 51
14526463 TCTGTATTGA
* * *
14526473 CAATGCCATATCCCAGATATGGTCTTACATGGGAGTC-CTCATATCGGTAC
1 CAATGCCATGTCCCAGACATGGTCTTACATGGGAGCCTCTCATATCGGTAC
* * * * *
14526523 CTATGCCATGTCCCAGACATAGTCTT--ATGGGGGACCTCTCATCTCGGTGC
1 CAATGCCATGTCCCAGACATGGTCTTACATGGGAG-CCTCTCATATCGGTAC
* * *
14526573 CAACGCCATGTCCCAGACATTGTCTTACATGGGA-CCTCTCATAATCTCAATGATAC
1 CAATGCCATGTCCCAGACATGGTCTTACATGGGAGCCTCTCAT-A--TC---GGTAC
14526629 CAATGCCATGTCCCAGACATGGTCTTACATGGGA
1 CAATGCCATGTCCCAGACATGGTCTTACATGGGA
14526663 TCTCATTCCC
Statistics
Matches: 113, Mismatches: 17, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
48 6 0.05
49 1 0.01
50 64 0.57
52 5 0.04
53 2 0.02
56 35 0.31
ACGTcount: A:0.25, C:0.28, G:0.20, T:0.27
Consensus pattern (51 bp):
CAATGCCATGTCCCAGACATGGTCTTACATGGGAGCCTCTCATATCGGTAC
Found at i:14530920 original size:50 final size:49
Alignment explanation
Indices: 14530794--14530925 Score: 153
Period size: 48 Copynumber: 2.7 Consensus size: 49
14530784 GTAGGAAGTT
*
14530794 AGTGGCAGTTTATCTGCAAATCAGTGGTGGCTT-TCAACAAAGTGTTTT
1 AGTGGCAGTTTATCTGCAAATCAGTGGTGGCTTGTCAACAAAGTGTTTC
*** * * * *
14530842 AGTAATAGTATATCTGCATAT--GTGGTGGCTTGTCCACAATGTGTTATC
1 AGTGGCAGTTTATCTGCAAATCAGTGGTGGCTTGTCAACAAAGTGTT-TC
*
14530890 GGTGGCAGTTTATCTGCAAATCAGTGGTGGCTTGTC
1 AGTGGCAGTTTATCTGCAAATCAGTGGTGGCTTGTC
14530926 TATAAATGGT
Statistics
Matches: 66, Mismatches: 14, Indels: 6
0.77 0.16 0.07
Matches are distributed among these distances:
46 10 0.15
47 11 0.17
48 32 0.48
50 13 0.20
ACGTcount: A:0.23, C:0.15, G:0.27, T:0.36
Consensus pattern (49 bp):
AGTGGCAGTTTATCTGCAAATCAGTGGTGGCTTGTCAACAAAGTGTTTC
Found at i:14542680 original size:18 final size:17
Alignment explanation
Indices: 14542647--14542685 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 17
14542637 TTTTATAAAT
14542647 TGTGAATTATATTTGATA
1 TGTGAATTATATTTGA-A
14542665 TGTGAATTA-ATATTGAA
1 TGTGAATTATAT-TTGAA
14542682 TGTG
1 TGTG
14542686 GAAGGAAAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
17 7 0.35
18 13 0.65
ACGTcount: A:0.33, C:0.00, G:0.21, T:0.46
Consensus pattern (17 bp):
TGTGAATTATATTTGAA
Found at i:14542940 original size:23 final size:23
Alignment explanation
Indices: 14542914--14542963 Score: 82
Period size: 23 Copynumber: 2.2 Consensus size: 23
14542904 GTTATTGATT
14542914 AGTGGTAGCTACGACTACATATC
1 AGTGGTAGCTACGACTACATATC
* *
14542937 AGTGGTAGCTTCGGCTACATATC
1 AGTGGTAGCTACGACTACATATC
14542960 AGTG
1 AGTG
14542964 TGGCACTTTC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.26, C:0.20, G:0.26, T:0.28
Consensus pattern (23 bp):
AGTGGTAGCTACGACTACATATC
Found at i:14548088 original size:5 final size:5
Alignment explanation
Indices: 14548075--14548121 Score: 51
Period size: 5 Copynumber: 9.2 Consensus size: 5
14548065 TGAAGTTTTC
* *
14548075 TCGAA TCGAG TCGAA T-GAGA TGGAA TTCGAA TCGAA TCGAA TCGAA T
1 TCGAA TCGAA TCGAA TCGA-A TCGAA -TCGAA TCGAA TCGAA TCGAA T
14548122 ATATTTGTTC
Statistics
Matches: 36, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
4 2 0.06
5 28 0.78
6 6 0.17
ACGTcount: A:0.36, C:0.15, G:0.26, T:0.23
Consensus pattern (5 bp):
TCGAA
Found at i:14548800 original size:30 final size:31
Alignment explanation
Indices: 14548761--14548820 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 31
14548751 GGAGGTGGGA
*
14548761 TGAGAAGGGAATAAAAGTTTTAAGGGAAAAG
1 TGAGAAGGGAATAAAAATTTTAAGGGAAAAG
* **
14548792 TGAG-AGGGAGTAAAAATTTTGGGGGAAAA
1 TGAGAAGGGAATAAAAATTTTAAGGGAAAA
14548821 TAAAAGGTTT
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
30 21 0.84
31 4 0.16
ACGTcount: A:0.45, C:0.00, G:0.35, T:0.20
Consensus pattern (31 bp):
TGAGAAGGGAATAAAAATTTTAAGGGAAAAG
Found at i:14549047 original size:9 final size:9
Alignment explanation
Indices: 14549033--14549060 Score: 56
Period size: 9 Copynumber: 3.1 Consensus size: 9
14549023 TATAGTTTGA
14549033 TATTCGAAT
1 TATTCGAAT
14549042 TATTCGAAT
1 TATTCGAAT
14549051 TATTCGAAT
1 TATTCGAAT
14549060 T
1 T
14549061 CGAAAACTCA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.32, C:0.11, G:0.11, T:0.46
Consensus pattern (9 bp):
TATTCGAAT
Found at i:14549130 original size:9 final size:9
Alignment explanation
Indices: 14549103--14549145 Score: 50
Period size: 9 Copynumber: 4.7 Consensus size: 9
14549093 AAAAAAAAAT
*
14549103 TCGAGTTAAT
1 TCGA-TTAAC
*
14549113 TCGAATAAC
1 TCGATTAAC
14549122 TCGATTAAC
1 TCGATTAAC
*
14549131 TCGAATAAC
1 TCGATTAAC
14549140 TCGATT
1 TCGATT
14549146 CGTTTAACTC
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
9 24 0.86
10 4 0.14
ACGTcount: A:0.35, C:0.19, G:0.14, T:0.33
Consensus pattern (9 bp):
TCGATTAAC
Found at i:14549134 original size:18 final size:18
Alignment explanation
Indices: 14549103--14549145 Score: 68
Period size: 18 Copynumber: 2.3 Consensus size: 18
14549093 AAAAAAAAAT
*
14549103 TCGAGTTAATTCGAATAAC
1 TCGA-TTAACTCGAATAAC
14549122 TCGATTAACTCGAATAAC
1 TCGATTAACTCGAATAAC
14549140 TCGATT
1 TCGATT
14549146 CGTTTAACTC
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
18 19 0.83
19 4 0.17
ACGTcount: A:0.35, C:0.19, G:0.14, T:0.33
Consensus pattern (18 bp):
TCGATTAACTCGAATAAC
Found at i:14552827 original size:19 final size:20
Alignment explanation
Indices: 14552787--14552829 Score: 61
Period size: 20 Copynumber: 2.2 Consensus size: 20
14552777 CCTTAGAATT
**
14552787 TTTTTAAAAAAAATTTATAA
1 TTTTTAAAAAAAAAATATAA
14552807 TTTTTAAAAAAAAAATA-AA
1 TTTTTAAAAAAAAAATATAA
14552826 TTTT
1 TTTT
14552830 AAGTTTTAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 6 0.29
20 15 0.71
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (20 bp):
TTTTTAAAAAAAAAATATAA
Found at i:14552836 original size:25 final size:25
Alignment explanation
Indices: 14552792--14552841 Score: 75
Period size: 25 Copynumber: 2.0 Consensus size: 25
14552782 GAATTTTTTT
*
14552792 AAAAAAAATTTATAATTTTTAAAAA
1 AAAAAAAATTTATAAGTTTTAAAAA
14552817 AAAAATAAATTT-TAAGTTTTAAAAA
1 AAAAA-AAATTTATAAGTTTTAAAAA
14552842 TTATTTTGAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 17 0.74
26 6 0.26
ACGTcount: A:0.62, C:0.00, G:0.02, T:0.36
Consensus pattern (25 bp):
AAAAAAAATTTATAAGTTTTAAAAA
Found at i:14553577 original size:42 final size:42
Alignment explanation
Indices: 14553518--14553607 Score: 162
Period size: 42 Copynumber: 2.1 Consensus size: 42
14553508 TTTGTTAAAA
*
14553518 TTTAATGACGTGATAGAATTTAAAAGTGCTACAACATCACGC
1 TTTAATGACGTGATAGAATCTAAAAGTGCTACAACATCACGC
*
14553560 TTTAATGACGTGATAGAATCTAAAAGTGTTACAACATCACGC
1 TTTAATGACGTGATAGAATCTAAAAGTGCTACAACATCACGC
14553602 TTTAAT
1 TTTAAT
14553608 TTTTTAAAAT
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
42 46 1.00
ACGTcount: A:0.38, C:0.16, G:0.16, T:0.31
Consensus pattern (42 bp):
TTTAATGACGTGATAGAATCTAAAAGTGCTACAACATCACGC
Found at i:14555050 original size:15 final size:15
Alignment explanation
Indices: 14555030--14555066 Score: 56
Period size: 15 Copynumber: 2.5 Consensus size: 15
14555020 AAACCGAAAG
*
14555030 AAAAAGAAAAAAGAA
1 AAAAAGAAAAAACAA
14555045 AAAAAGAAAAAACAA
1 AAAAAGAAAAAACAA
*
14555060 GAAAAGA
1 AAAAAGA
14555067 TCTAAAACCA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.84, C:0.03, G:0.14, T:0.00
Consensus pattern (15 bp):
AAAAAGAAAAAACAA
Found at i:14555953 original size:44 final size:44
Alignment explanation
Indices: 14555881--14556000 Score: 120
Period size: 44 Copynumber: 2.7 Consensus size: 44
14555871 TCGAATTCAA
* * *
14555881 TCTGCTCCACTGCAACCTC-AGGGAGATAAGATTTGCTTCTT-T-AG
1 TCTGCCCCACTGCAACTTCAAGGG-GATAAGACTTG-TT-TTCTCAG
**
14555925 TCTGCCCCACTGTGACTTCAAGGGGATAAGACTTGTTTTCTCAG
1 TCTGCCCCACTGCAACTTCAAGGGGATAAGACTTGTTTTCTCAG
* * *
14555969 TCTGCTCCGCTGCAACTTCAAGGAGATAAGAC
1 TCTGCCCCACTGCAACTTCAAGGGGATAAGAC
14556001 CCGATGCGAT
Statistics
Matches: 63, Mismatches: 10, Indels: 6
0.80 0.13 0.08
Matches are distributed among these distances:
42 2 0.03
43 3 0.05
44 54 0.86
45 4 0.06
ACGTcount: A:0.23, C:0.26, G:0.22, T:0.29
Consensus pattern (44 bp):
TCTGCCCCACTGCAACTTCAAGGGGATAAGACTTGTTTTCTCAG
Found at i:14556446 original size:173 final size:174
Alignment explanation
Indices: 14556246--14556576 Score: 531
Period size: 173 Copynumber: 1.9 Consensus size: 174
14556236 GCTAGTGCTT
14556246 AGGAAGGCAAGATCTGCTATCTTTAACCAGCTCCACTACAA-TCGATGGAGGCAAGGCTTCGTAT
1 AGGAAGGCAAGATCTGCTATCTTTAACCAGCTCCACTACAACT-GATGGAGGCAAGGCTTCGTAT
* * *
14556310 TCTATCTACTTCGTTGTTAACGCAGGAAGACAAGATCTGCTATCTTTAACCAGCTCCATTGCAAC
65 TCGATCTACTTCGCTGTTAACGCAGGAAGACAAGATCTGCTATCTTTAACCAGCTCCACTGCAAC
14556375 CGATGGAGGCAAGG-TTTGTTTTCGATCTGCTTCGCTGTTAATAC
130 CGATGGAGGCAAGGCTTTGTTTTCGATCTGCTTCGCTGTTAATAC
* * * *
14556419 AGGAAGGCAAGATCTGCTATCTTTAACCAGCTCCACTGCAACTGATGGATGCAAGGCTTTGTTTT
1 AGGAAGGCAAGATCTGCTATCTTTAACCAGCTCCACTACAACTGATGGAGGCAAGGCTTCGTATT
* * * * *
14556484 CGATCTGCTTCGCTGTTTATGCAGGAAGGCAAGATCTGCTATCTTTAACTAGCTCCACTGCAACC
66 CGATCTACTTCGCTGTTAACGCAGGAAGACAAGATCTGCTATCTTTAACCAGCTCCACTGCAACC
14556549 GATGGAGGCAAGGCTTTGTTTTCGATCT
131 GATGGAGGCAAGGCTTTGTTTTCGATCT
14556577 TCACTGATCT
Statistics
Matches: 144, Mismatches: 12, Indels: 3
0.91 0.08 0.02
Matches are distributed among these distances:
173 129 0.90
174 15 0.10
ACGTcount: A:0.25, C:0.23, G:0.22, T:0.30
Consensus pattern (174 bp):
AGGAAGGCAAGATCTGCTATCTTTAACCAGCTCCACTACAACTGATGGAGGCAAGGCTTCGTATT
CGATCTACTTCGCTGTTAACGCAGGAAGACAAGATCTGCTATCTTTAACCAGCTCCACTGCAACC
GATGGAGGCAAGGCTTTGTTTTCGATCTGCTTCGCTGTTAATAC
Found at i:14556525 original size:87 final size:87
Alignment explanation
Indices: 14556246--14556576 Score: 520
Period size: 87 Copynumber: 3.8 Consensus size: 87
14556236 GCTAGTGCTT
* * * *
14556246 AGGAAGGCAAGATCTGCTATCTTTAACCAGCTCCACTACAATCGATGGAGGCAAGGCTTCGTATT
1 AGGAAGGCAAGATCTGCTATCTTTAACCAGCTCCACTGCAACCGATGGAGGCAAGGCTTTGTTTT
* * * *
14556311 CTATCTACTTCGTTGTTAACGC
66 CGATCTGCTTCGCTGTTAATGC
* *
14556333 AGGAAGACAAGATCTGCTATCTTTAACCAGCTCCATTGCAACCGATGGAGGCAAGG-TTTGTTTT
1 AGGAAGGCAAGATCTGCTATCTTTAACCAGCTCCACTGCAACCGATGGAGGCAAGGCTTTGTTTT
*
14556397 CGATCTGCTTCGCTGTTAATAC
66 CGATCTGCTTCGCTGTTAATGC
* *
14556419 AGGAAGGCAAGATCTGCTATCTTTAACCAGCTCCACTGCAACTGATGGATGCAAGGCTTTGTTTT
1 AGGAAGGCAAGATCTGCTATCTTTAACCAGCTCCACTGCAACCGATGGAGGCAAGGCTTTGTTTT
*
14556484 CGATCTGCTTCGCTGTTTATGC
66 CGATCTGCTTCGCTGTTAATGC
*
14556506 AGGAAGGCAAGATCTGCTATCTTTAACTAGCTCCACTGCAACCGATGGAGGCAAGGCTTTGTTTT
1 AGGAAGGCAAGATCTGCTATCTTTAACCAGCTCCACTGCAACCGATGGAGGCAAGGCTTTGTTTT
14556571 CGATCT
66 CGATCT
14556577 TCACTGATCT
Statistics
Matches: 223, Mismatches: 20, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
86 75 0.34
87 148 0.66
ACGTcount: A:0.25, C:0.23, G:0.22, T:0.30
Consensus pattern (87 bp):
AGGAAGGCAAGATCTGCTATCTTTAACCAGCTCCACTGCAACCGATGGAGGCAAGGCTTTGTTTT
CGATCTGCTTCGCTGTTAATGC
Found at i:14557843 original size:7 final size:6
Alignment explanation
Indices: 14557812--14557839 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
14557802 ACTTTTCATT
14557812 TTTTCA TTTTCA TTTTCA TTTTCA TTTT
1 TTTTCA TTTTCA TTTTCA TTTTCA TTTT
14557840 TCATCTTTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.14, C:0.14, G:0.00, T:0.71
Consensus pattern (6 bp):
TTTTCA
Found at i:14557851 original size:12 final size:12
Alignment explanation
Indices: 14557811--14557852 Score: 50
Period size: 12 Copynumber: 3.4 Consensus size: 12
14557801 TACTTTTCAT
14557811 TTTTTCATTTTC
1 TTTTTCATTTTC
*
14557823 ATTTTCATTTTC
1 TTTTTCATTTTC
14557835 ATTTTTCATCTTT-
1 -TTTTTCAT-TTTC
14557848 TTTTT
1 TTTTT
14557853 GAACTTCATT
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
12 16 0.62
13 7 0.27
14 3 0.12
ACGTcount: A:0.12, C:0.14, G:0.00, T:0.74
Consensus pattern (12 bp):
TTTTTCATTTTC
Found at i:14562644 original size:2 final size:2
Alignment explanation
Indices: 14562639--14562676 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
14562629 AACTGCTGTC
14562639 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
14562677 TATTTTTTAA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:14563073 original size:17 final size:17
Alignment explanation
Indices: 14563047--14563089 Score: 50
Period size: 17 Copynumber: 2.5 Consensus size: 17
14563037 AATGTTATGT
*
14563047 CAAACTCAAGATGAACA
1 CAAACACAAGATGAACA
**
14563064 CAAACACAAGATTCACA
1 CAAACACAAGATGAACA
*
14563081 CAAGCACAA
1 CAAACACAA
14563090 CAATTATTAA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
17 22 1.00
ACGTcount: A:0.53, C:0.28, G:0.09, T:0.09
Consensus pattern (17 bp):
CAAACACAAGATGAACA
Found at i:14566077 original size:12 final size:12
Alignment explanation
Indices: 14566060--14566084 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
14566050 TCAACGTGGC
14566060 TTAGCTATTGGA
1 TTAGCTATTGGA
14566072 TTAGCTATTGGA
1 TTAGCTATTGGA
14566084 T
1 T
14566085 ACCAAAACCA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.24, C:0.08, G:0.24, T:0.44
Consensus pattern (12 bp):
TTAGCTATTGGA
Found at i:14582970 original size:18 final size:19
Alignment explanation
Indices: 14582943--14582985 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 19
14582933 TTAAATTTAG
* *
14582943 AAATATGTGCCT-AACAAA
1 AAATACGTGCCTGAAAAAA
*
14582961 AAATACGTGCTTGAAAAAA
1 AAATACGTGCCTGAAAAAA
14582980 AAATAC
1 AAATAC
14582986 TCTTAATAAT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
18 10 0.48
19 11 0.52
ACGTcount: A:0.53, C:0.14, G:0.12, T:0.21
Consensus pattern (19 bp):
AAATACGTGCCTGAAAAAA
Found at i:14583257 original size:10 final size:10
Alignment explanation
Indices: 14583242--14583266 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
14583232 GGTTATGCCT
14583242 TTTTTTTTTC
1 TTTTTTTTTC
14583252 TTTTTTTTTC
1 TTTTTTTTTC
14583262 TTTTT
1 TTTTT
14583267 CTCATGTCTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.00, C:0.08, G:0.00, T:0.92
Consensus pattern (10 bp):
TTTTTTTTTC
Found at i:14583344 original size:29 final size:29
Alignment explanation
Indices: 14583287--14583344 Score: 66
Period size: 29 Copynumber: 2.0 Consensus size: 29
14583277 TCAATCTAGG
* *
14583287 TTATGTTAGGTTCGAATTATGGTTGAATT
1 TTATGTTAGGCTCGAATTATGGTAGAATT
14583316 TTATGTTTAGGCTCG-ATTA-GGTAGCAATT
1 TTATG-TTAGGCTCGAATTATGGTAG-AATT
14583345 GGACAAATAT
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
28 4 0.16
29 13 0.52
30 8 0.32
ACGTcount: A:0.24, C:0.07, G:0.24, T:0.45
Consensus pattern (29 bp):
TTATGTTAGGCTCGAATTATGGTAGAATT
Found at i:14583445 original size:2 final size:2
Alignment explanation
Indices: 14583438--14583488 Score: 102
Period size: 2 Copynumber: 25.5 Consensus size: 2
14583428 AAAATTTTAA
14583438 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
14583480 AT AT AT AT A
1 AT AT AT AT A
14583489 AATAGGTTGA
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 49 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:14585474 original size:14 final size:13
Alignment explanation
Indices: 14585444--14585487 Score: 58
Period size: 12 Copynumber: 3.5 Consensus size: 13
14585434 ACATATTTAA
14585444 TATTA-AATAATT
1 TATTATAATAATT
14585456 TATTATAATAA--
1 TATTATAATAATT
14585467 TATTATTAATAATT
1 TATTA-TAATAATT
14585481 TATTATA
1 TATTATA
14585488 TTATCAAATA
Statistics
Matches: 28, Mismatches: 0, Indels: 7
0.80 0.00 0.20
Matches are distributed among these distances:
11 5 0.18
12 11 0.39
13 7 0.25
14 5 0.18
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (13 bp):
TATTATAATAATT
Found at i:14585481 original size:25 final size:23
Alignment explanation
Indices: 14585441--14585487 Score: 76
Period size: 25 Copynumber: 2.0 Consensus size: 23
14585431 AATACATATT
14585441 TAATATTAAATAATTTATTATAA
1 TAATATTAAATAATTTATTATAA
14585464 TAATATTATTAATAATTTATTATA
1 TAATATTA--AATAATTTATTATA
14585488 TTATCAAATA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
23 8 0.36
25 14 0.64
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (23 bp):
TAATATTAAATAATTTATTATAA
Found at i:14586507 original size:5 final size:5
Alignment explanation
Indices: 14586497--14586521 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
14586487 TAAGTGATTC
14586497 TTTAT TTTAT TTTAT TTTAT TTTAT
1 TTTAT TTTAT TTTAT TTTAT TTTAT
14586522 ATTTCAATAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (5 bp):
TTTAT
Found at i:14587923 original size:18 final size:19
Alignment explanation
Indices: 14587900--14587935 Score: 65
Period size: 18 Copynumber: 1.9 Consensus size: 19
14587890 TCTTTTTCAC
14587900 GTTTTTCTTTTC-TCTTTA
1 GTTTTTCTTTTCTTCTTTA
14587918 GTTTTTCTTTTCTTCTTT
1 GTTTTTCTTTTCTTCTTT
14587936 CTTTGTTCTG
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
18 12 0.71
19 5 0.29
ACGTcount: A:0.03, C:0.17, G:0.06, T:0.75
Consensus pattern (19 bp):
GTTTTTCTTTTCTTCTTTA
Found at i:14588164 original size:34 final size:34
Alignment explanation
Indices: 14588125--14588195 Score: 106
Period size: 34 Copynumber: 2.1 Consensus size: 34
14588115 TCGTTCAAGT
**
14588125 TGAGATCGTGTATTATTTGTTTTGTTCAAATTTG
1 TGAGATCGTGTAGCATTTGTTTTGTTCAAATTTG
* *
14588159 TGAGATCGTGTAGCGTTTGTTTTGTTCGAATTTG
1 TGAGATCGTGTAGCATTTGTTTTGTTCAAATTTG
14588193 TGA
1 TGA
14588196 CTATTGTTTT
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
34 33 1.00
ACGTcount: A:0.18, C:0.07, G:0.25, T:0.49
Consensus pattern (34 bp):
TGAGATCGTGTAGCATTTGTTTTGTTCAAATTTG
Found at i:14589281 original size:15 final size:15
Alignment explanation
Indices: 14589261--14589290 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
14589251 ACGATCCAAC
*
14589261 ATGATATGTTATGAT
1 ATGATAAGTTATGAT
14589276 ATGATAAGTTATGAT
1 ATGATAAGTTATGAT
14589291 CCATATGAAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.37, C:0.00, G:0.20, T:0.43
Consensus pattern (15 bp):
ATGATAAGTTATGAT
Found at i:14593706 original size:32 final size:32
Alignment explanation
Indices: 14593665--14593729 Score: 130
Period size: 32 Copynumber: 2.0 Consensus size: 32
14593655 CATAATCTCC
14593665 GTGATTTGTATTGGTGGCCTAGGCTGAAGCAT
1 GTGATTTGTATTGGTGGCCTAGGCTGAAGCAT
14593697 GTGATTTGTATTGGTGGCCTAGGCTGAAGCAT
1 GTGATTTGTATTGGTGGCCTAGGCTGAAGCAT
14593729 G
1 G
14593730 AGATGATTGA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.18, C:0.12, G:0.35, T:0.34
Consensus pattern (32 bp):
GTGATTTGTATTGGTGGCCTAGGCTGAAGCAT
Found at i:14597401 original size:40 final size:40
Alignment explanation
Indices: 14597341--14597569 Score: 262
Period size: 40 Copynumber: 5.7 Consensus size: 40
14597331 AATAAAATAT
* *
14597341 CCCCTGAATGCACATACGTGCGCTTGTTTGTACTTCGGTA
1 CCCCTGAATGCACATACGTGCCCCTGTTTGTACTTCGGTA
*
14597381 CCCCCGAATGCACATACGTGCCCCTGTTTGTACTTCGGTA
1 CCCCTGAATGCACATACGTGCCCCTGTTTGTACTTCGGTA
* * * *
14597421 CCCCCGAATGCACATATGTGCCCCTATTTTTACTTCGGTA
1 CCCCTGAATGCACATACGTGCCCCTGTTTGTACTTCGGTA
* * * * * * **
14597461 CCCCTGAATGCACAAACATTCCCTTTTTTATACTTCAATA
1 CCCCTGAATGCACATACGTGCCCCTGTTTGTACTTCGGTA
* * *
14597501 CTCCTGAATGCACATACGTGCCCCTGTATGTACTTCAGTA
1 CCCCTGAATGCACATACGTGCCCCTGTTTGTACTTCGGTA
* *
14597541 CTCCT-ACTTGCACATACGTGCCCCTGTTT
1 CCCCTGA-ATGCACATACGTGCCCCTGTTT
14597570 ATATTTTGGT
Statistics
Matches: 161, Mismatches: 27, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
39 1 0.01
40 160 0.99
ACGTcount: A:0.21, C:0.32, G:0.16, T:0.32
Consensus pattern (40 bp):
CCCCTGAATGCACATACGTGCCCCTGTTTGTACTTCGGTA
Found at i:14597553 original size:120 final size:120
Alignment explanation
Indices: 14597341--14597565 Score: 290
Period size: 120 Copynumber: 1.9 Consensus size: 120
14597331 AATAAAATAT
* * * * **
14597341 CCCCTGAATGCACATACGTGCGCTTGTTTGTACTTCGGTACCCCCGAATGCACATACGTGCCCCT
1 CCCCTGAATGCACAAACATGCCCTTGTTTATACTTCAATACCCCCGAATGCACATACGTGCCCCT
* * *
14597406 GTTTGTACTTCGGTACCCCCGAATGCACATATGTGCCCCTATTTTTACTTCGGTA
66 GTATGTACTTCAGTACCCCCGAATGCACATACGTGCCCCTATTTTTACTTCGGTA
* * * *
14597461 CCCCTGAATGCACAAACATTCCCTTTTTTATACTTCAATACTCCTGAATGCACATACGTGCCCCT
1 CCCCTGAATGCACAAACATGCCCTTGTTTATACTTCAATACCCCCGAATGCACATACGTGCCCCT
* * *
14597526 GTATGTACTTCAGTA-CTCCTACTTGCACATACGTGCCCCT
66 GTATGTACTTCAGTACCCCCGA-ATGCACATACGTGCCCCT
14597566 GTTTATATTT
Statistics
Matches: 88, Mismatches: 16, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
119 4 0.05
120 84 0.95
ACGTcount: A:0.21, C:0.32, G:0.16, T:0.31
Consensus pattern (120 bp):
CCCCTGAATGCACAAACATGCCCTTGTTTATACTTCAATACCCCCGAATGCACATACGTGCCCCT
GTATGTACTTCAGTACCCCCGAATGCACATACGTGCCCCTATTTTTACTTCGGTA
Found at i:14599138 original size:27 final size:26
Alignment explanation
Indices: 14599108--14599163 Score: 75
Period size: 22 Copynumber: 2.3 Consensus size: 26
14599098 CGGCTAGACC
14599108 GCAAATTAAATATATGGCAGCTTAGTT
1 GCAAA-TAAATATATGGCAGCTTAGTT
14599135 GC----AAATATATGGCAGCTTAGTT
1 GCAAATAAATATATGGCAGCTTAGTT
14599157 GCAAATA
1 GCAAATA
14599164 TATGGCAGTT
Statistics
Matches: 25, Mismatches: 0, Indels: 9
0.74 0.00 0.26
Matches are distributed among these distances:
22 22 0.88
26 1 0.04
27 2 0.08
ACGTcount: A:0.38, C:0.12, G:0.20, T:0.30
Consensus pattern (26 bp):
GCAAATAAATATATGGCAGCTTAGTT
Found at i:14599142 original size:22 final size:22
Alignment explanation
Indices: 14599115--14599176 Score: 115
Period size: 22 Copynumber: 2.8 Consensus size: 22
14599105 ACCGCAAATT
14599115 AAATATATGGCAGCTTAGTTGC
1 AAATATATGGCAGCTTAGTTGC
14599137 AAATATATGGCAGCTTAGTTGC
1 AAATATATGGCAGCTTAGTTGC
*
14599159 AAATATATGGCAGTTTAG
1 AAATATATGGCAGCTTAG
14599177 AAATAGTAAC
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
22 39 1.00
ACGTcount: A:0.34, C:0.11, G:0.23, T:0.32
Consensus pattern (22 bp):
AAATATATGGCAGCTTAGTTGC
Found at i:14605456 original size:16 final size:16
Alignment explanation
Indices: 14605432--14605469 Score: 58
Period size: 16 Copynumber: 2.4 Consensus size: 16
14605422 TTTGGTTCGC
* *
14605432 TGTATTGGATTAGAGG
1 TGTAATGGAATAGAGG
14605448 TGTAATGGAATAGAGG
1 TGTAATGGAATAGAGG
14605464 TGTAAT
1 TGTAAT
14605470 AGCAAATCAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.32, C:0.00, G:0.34, T:0.34
Consensus pattern (16 bp):
TGTAATGGAATAGAGG
Found at i:14605735 original size:17 final size:18
Alignment explanation
Indices: 14605703--14605737 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
14605693 TTATTATTAA
*
14605703 ATATATTTTAAATAAAAT
1 ATATAATTTAAATAAAAT
14605721 ATATAATTT-AATAAAAT
1 ATATAATTTAAATAAAAT
14605738 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 8 0.50
18 8 0.50
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (18 bp):
ATATAATTTAAATAAAAT
Found at i:14615562 original size:20 final size:20
Alignment explanation
Indices: 14615529--14615574 Score: 56
Period size: 20 Copynumber: 2.3 Consensus size: 20
14615519 AGCGAATGGG
* * *
14615529 GATAGGATTTGATTTGTTAT
1 GATATGATTCGATTTGATAT
*
14615549 GCTATGATTCGATTTGATAT
1 GATATGATTCGATTTGATAT
14615569 GATATG
1 GATATG
14615575 TTATGATACG
Statistics
Matches: 21, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.26, C:0.04, G:0.24, T:0.46
Consensus pattern (20 bp):
GATATGATTCGATTTGATAT
Found at i:14615574 original size:25 final size:25
Alignment explanation
Indices: 14615529--14615607 Score: 79
Period size: 25 Copynumber: 3.2 Consensus size: 25
14615519 AGCGAATGGG
* * *
14615529 GATAGGATTTGATTTGTTATGCTAT
1 GATACGATTTGATATGATATGCTAT
* *
14615554 GATTCGATTTGATATGATATGTTAT
1 GATACGATTTGATATGATATGCTAT
* *
14615579 GATACGATCT-AGCATGATATGCTAT
1 GATACGATTTGA-TATGATATGCTAT
14615604 GATA
1 GATA
14615608 TGATAAGTTA
Statistics
Matches: 44, Mismatches: 9, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
24 1 0.02
25 43 0.98
ACGTcount: A:0.29, C:0.08, G:0.22, T:0.42
Consensus pattern (25 bp):
GATACGATTTGATATGATATGCTAT
Found at i:14615620 original size:25 final size:25
Alignment explanation
Indices: 14615566--14615620 Score: 58
Period size: 25 Copynumber: 2.2 Consensus size: 25
14615556 TTCGATTTGA
* *
14615566 TATGATATGTTATGATACGATCTAG
1 TATGATATGCTATGATACGATCAAG
* *
14615591 CATGATATGCTATGATATGAT-AAG
1 TATGATATGCTATGATACGATCAAG
14615615 TTATGA
1 -TATGA
14615621 CTCATATGAA
Statistics
Matches: 24, Mismatches: 5, Indels: 2
0.77 0.16 0.06
Matches are distributed among these distances:
24 2 0.08
25 22 0.92
ACGTcount: A:0.35, C:0.07, G:0.20, T:0.38
Consensus pattern (25 bp):
TATGATATGCTATGATACGATCAAG
Found at i:14623893 original size:12 final size:12
Alignment explanation
Indices: 14623876--14623900 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
14623866 CATCATTATT
14623876 TCCTTCTTCCTC
1 TCCTTCTTCCTC
14623888 TCCTTCTTCCTC
1 TCCTTCTTCCTC
14623900 T
1 T
14623901 TCCCCATGCT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52
Consensus pattern (12 bp):
TCCTTCTTCCTC
Found at i:14624552 original size:265 final size:265
Alignment explanation
Indices: 14624079--14624613 Score: 880
Period size: 265 Copynumber: 2.0 Consensus size: 265
14624069 TCGGATTTCC
* * * **
14624079 TCTTTGGAAGGGAAGGTGGTACTTCTATCTTTTGCTTTTGGTGTTGGTTCAACTTTTGAATTTGC
1 TCTTTGGAAGGGAAAGTGGCACTTCCATCTTTTGCTTTCAGTGTTGGTTCAACTTTTGAATTTGC
14624144 TTCATTTGCAATTATCAATATTGTCCAAGAATGCTATCACCAATAATGCTTTTCATGGGTTTATG
66 TTCATTTGCAATTATCAATATTGTCCAAGAATGCTATCACCAATAATGCTTTTCATGGGTTTATG
14624209 GAACTATTCAGTTGGCTCCTTTTTCACCTTAGCTTTACGACATAAATCTGTGACCTAGTGTGGAA
131 GAACTATTCAGTTGGCTCCTTTTTCACCTTAGCTTTACGACATAAATCTGTGACCTAGTGTGGAA
*
14624274 AATATATACAAACTTTACCTCTAGAAACACACTTACACATATATTTGTG-ATCCCATTTCCCCAA
196 AATATATACAAACTTTACCTCCAGAAACACACTTACACATATATTTGTGAAT-CCATTTCCCCAA
14624338 GAAAAT
260 GAAAAT
*
14624344 TCTTTGGAAGGGAAAGTGGCACTTCCATCTTTTGCTTTCAGTGTTGGCTTC-CCTTTTGAATTTG
1 TCTTTGGAAGGGAAAGTGGCACTTCCATCTTTTGCTTTCAGTGTTGG-TTCAACTTTTGAATTTG
* * **
14624408 CTTCATTTGCAATTATCAATATTGTCCACGAATGGTATCACCAATAATGCTTTTTGTGGGTTTAT
65 CTTCATTTGCAATTATCAATATTGTCCAAGAATGCTATCACCAATAATGCTTTTCATGGGTTTAT
14624473 GGAACTATTCAGTTGGCT-CTATTTTCACCTTAGCTTTACTG-CATAAATCTGTGACCTAGTGTG
130 GGAACTATTCAGTTGGCTCCT-TTTTCACCTTAGCTTTAC-GACATAAATCTGTGACCTAGTGTG
* **
14624536 GAAAATATATACAAACTTTACCTCCAGAAACACAGTTACACATATATTTGTGAATCCATTTCCTT
193 GAAAATATATACAAACTTTACCTCCAGAAACACACTTACACATATATTTGTGAATCCATTTCCCC
14624601 AAGAAAAT
258 AAGAAAAT
14624609 TCTTT
1 TCTTT
14624614 TTTTTCTGAG
Statistics
Matches: 252, Mismatches: 14, Indels: 8
0.92 0.05 0.03
Matches are distributed among these distances:
264 2 0.01
265 244 0.97
266 6 0.02
ACGTcount: A:0.27, C:0.19, G:0.16, T:0.38
Consensus pattern (265 bp):
TCTTTGGAAGGGAAAGTGGCACTTCCATCTTTTGCTTTCAGTGTTGGTTCAACTTTTGAATTTGC
TTCATTTGCAATTATCAATATTGTCCAAGAATGCTATCACCAATAATGCTTTTCATGGGTTTATG
GAACTATTCAGTTGGCTCCTTTTTCACCTTAGCTTTACGACATAAATCTGTGACCTAGTGTGGAA
AATATATACAAACTTTACCTCCAGAAACACACTTACACATATATTTGTGAATCCATTTCCCCAAG
AAAAT
Found at i:14631810 original size:44 final size:44
Alignment explanation
Indices: 14631747--14631834 Score: 176
Period size: 44 Copynumber: 2.0 Consensus size: 44
14631737 GGATGTTGAG
14631747 AATTGAACATAGGACTTTATGGAAACTAATTAAGCTCTTAAGCA
1 AATTGAACATAGGACTTTATGGAAACTAATTAAGCTCTTAAGCA
14631791 AATTGAACATAGGACTTTATGGAAACTAATTAAGCTCTTAAGCA
1 AATTGAACATAGGACTTTATGGAAACTAATTAAGCTCTTAAGCA
14631835 TTACACTAAC
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
44 44 1.00
ACGTcount: A:0.41, C:0.14, G:0.16, T:0.30
Consensus pattern (44 bp):
AATTGAACATAGGACTTTATGGAAACTAATTAAGCTCTTAAGCA
Found at i:14633326 original size:54 final size:54
Alignment explanation
Indices: 14633239--14633350 Score: 143
Period size: 54 Copynumber: 2.1 Consensus size: 54
14633229 AGGTGGGTTT
* *
14633239 ACATGGGCACAAAAAGTTACAAGGCCTGGCGACACGGCCATGTGACCCTGAGCC
1 ACATAGGCACAAAAAGTTACAAGGCCTGACGACACGGCCATGTGACCCTGAGCC
* * * *** *
14633293 ACATAGGCACAGAGAGTTACACGGCCTGACGACACGGTTGTGTGACCCTGAGCT
1 ACATAGGCACAAAAAGTTACAAGGCCTGACGACACGGCCATGTGACCCTGAGCC
14633347 ACAT
1 ACAT
14633351 GGCCTGGTCA
Statistics
Matches: 49, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
54 49 1.00
ACGTcount: A:0.29, C:0.28, G:0.28, T:0.16
Consensus pattern (54 bp):
ACATAGGCACAAAAAGTTACAAGGCCTGACGACACGGCCATGTGACCCTGAGCC
Found at i:14638153 original size:23 final size:23
Alignment explanation
Indices: 14638095--14638155 Score: 61
Period size: 23 Copynumber: 2.7 Consensus size: 23
14638085 ATTATCTTTT
* *
14638095 TATATTATTATAAATTTAAAATA
1 TATATTATTTTATATTTAAAATA
** *
14638118 TATAAAATCTTATATTTATAAA-A
1 TATATTATTTTATATTTA-AAATA
14638141 TATATTATTTTATAT
1 TATATTATTTTATAT
14638156 CAAGATTTTA
Statistics
Matches: 29, Mismatches: 8, Indels: 2
0.74 0.21 0.05
Matches are distributed among these distances:
23 26 0.90
24 3 0.10
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.51
Consensus pattern (23 bp):
TATATTATTTTATATTTAAAATA
Found at i:14638191 original size:23 final size:25
Alignment explanation
Indices: 14638164--14638219 Score: 80
Period size: 25 Copynumber: 2.3 Consensus size: 25
14638154 ATCAAGATTT
* *
14638164 TATAAAATAT-ATTTGT-CCAAATA
1 TATAAAATATAATTTATACAAAATA
14638187 TATAAAATATAATTTATACAAAATA
1 TATAAAATATAATTTATACAAAATA
14638212 TATAAAAT
1 TATAAAAT
14638220 CTAAAATGTA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
23 10 0.34
24 5 0.17
25 14 0.48
ACGTcount: A:0.55, C:0.05, G:0.02, T:0.38
Consensus pattern (25 bp):
TATAAAATATAATTTATACAAAATA
Found at i:14638248 original size:17 final size:18
Alignment explanation
Indices: 14638228--14638262 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
14638218 ATCTAAAATG
*
14638228 TATAAAA-ATCATATTTT
1 TATAAAATATCAAATTTT
14638245 TATAAAATATCAAATTTT
1 TATAAAATATCAAATTTT
14638263 ATGTATTTTA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 7 0.44
18 9 0.56
ACGTcount: A:0.49, C:0.06, G:0.00, T:0.46
Consensus pattern (18 bp):
TATAAAATATCAAATTTT
Found at i:14640985 original size:17 final size:17
Alignment explanation
Indices: 14640955--14640987 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
14640945 TATTTAAAAT
14640955 TTAATTTAATCATAATA
1 TTAATTTAATCATAATA
14640972 TTAACTTTAA-CATAAT
1 TTAA-TTTAATCATAAT
14640988 TTTTATGTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 10 0.67
18 5 0.33
ACGTcount: A:0.45, C:0.09, G:0.00, T:0.45
Consensus pattern (17 bp):
TTAATTTAATCATAATA
Found at i:14645539 original size:85 final size:85
Alignment explanation
Indices: 14645383--14645551 Score: 191
Period size: 85 Copynumber: 2.0 Consensus size: 85
14645373 TTAAGTTTCT
* * * *
14645383 CTATTTTTTTTACTCAATTGAGCACTTAAATTTTCAAAATATATTAAAAAGTCCTCAAACCTCTT
1 CTATTTTTTTCACTCAATTGAGCACTTAAATTTTCAAAATACATAAAAAAGCCCTCAAACCTCTT
14645448 CAAAAAATA-CAATTAAGCCC
66 CAAAAAA-AGCAATTAAGCCC
* * * * * * *
14645468 CTATTTTTTTCACTCAATTGGGTACTTGAATTTTTAAAATGCATAAAAAAGACCCTCAGAA-TTG
1 CTATTTTTTTCACTCAATTGAGCACTTAAATTTTCAAAATACATAAAAAAG-CCCTCA-AACCTC
14645532 TTC-AAAAAAGCAATTAAGCC
64 TTCAAAAAAAGCAATTAAGCC
14645552 ATACTCTTAT
Statistics
Matches: 70, Mismatches: 11, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
84 1 0.01
85 58 0.83
86 9 0.13
87 2 0.03
ACGTcount: A:0.39, C:0.18, G:0.08, T:0.34
Consensus pattern (85 bp):
CTATTTTTTTCACTCAATTGAGCACTTAAATTTTCAAAATACATAAAAAAGCCCTCAAACCTCTT
CAAAAAAAGCAATTAAGCCC
Found at i:14645976 original size:19 final size:20
Alignment explanation
Indices: 14645922--14645976 Score: 60
Period size: 19 Copynumber: 2.9 Consensus size: 20
14645912 CTTATGATTT
*
14645922 TTTTATGATTTTTATA-AAA
1 TTTTACGATTTTTATATAAA
* * *
14645941 TTTTACAATTTATATATATA
1 TTTTACGATTTTTATATAAA
14645961 -TTTACGATTTTTATAT
1 TTTTACGATTTTTATAT
14645977 TTTTTTTCTA
Statistics
Matches: 29, Mismatches: 6, Indels: 2
0.78 0.16 0.05
Matches are distributed among these distances:
19 27 0.93
20 2 0.07
ACGTcount: A:0.35, C:0.04, G:0.04, T:0.58
Consensus pattern (20 bp):
TTTTACGATTTTTATATAAA
Found at i:14646074 original size:11 final size:12
Alignment explanation
Indices: 14646050--14646075 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
14646040 TTGATTTTAA
14646050 TTTTTAAAATTT
1 TTTTTAAAATTT
14646062 TTTTTAAAATTT
1 TTTTTAAAATTT
14646074 TT
1 TT
14646076 AATAAAAGCA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (12 bp):
TTTTTAAAATTT
Found at i:14646224 original size:88 final size:89
Alignment explanation
Indices: 14646079--14646259 Score: 260
Period size: 88 Copynumber: 2.0 Consensus size: 89
14646069 AATTTTTAAT
*
14646079 AAAAGCAGGGGCTTAATTGATTTTCTTGAAAAAGTTTGAGGGTCTTTTTGATGCATTTTAAAAGT
1 AAAAGCAGGGGCTTAATTGATTTTCTTGAAAAAGTTTGAGGGACTTTTTGATGCATTTTAAAAGT
* * *
14646144 TCAAGTACCCAATTGAGTGCAAAG
66 TCAAGTACCCAAATGAATGCAAAA
* * *
14646168 AAAAGTAGAGGGCTTAATTGCA-TTT-TTGAAAAGGTTTGA-GGACTTTTTGATGCATTTTGAAA
1 AAAAGCAG-GGGCTTAATTG-ATTTTCTTGAAAAAGTTTGAGGGACTTTTTGATGCATTTTAAAA
14646230 GTTCAAGTACCCAAATGAATGCAAAA
64 GTTCAAGTACCCAAATGAATGCAAAA
14646256 AAAA
1 AAAA
14646260 AAAAAACAGT
Statistics
Matches: 83, Mismatches: 7, Indels: 5
0.87 0.07 0.05
Matches are distributed among these distances:
88 48 0.58
89 20 0.24
90 14 0.17
91 1 0.01
ACGTcount: A:0.36, C:0.10, G:0.22, T:0.32
Consensus pattern (89 bp):
AAAAGCAGGGGCTTAATTGATTTTCTTGAAAAAGTTTGAGGGACTTTTTGATGCATTTTAAAAGT
TCAAGTACCCAAATGAATGCAAAA
Found at i:14656469 original size:27 final size:27
Alignment explanation
Indices: 14656437--14656574 Score: 154
Period size: 27 Copynumber: 5.2 Consensus size: 27
14656427 ACAAATTCTA
* * *
14656437 TTCTTTTATATTATGCCACAAAGGCAT
1 TTCTTTCATATTACGCCACAAAGGCTT
* *
14656464 TCCTTTAATATTACGCCACAAAGGCTT
1 TTCTTTCATATTACGCCACAAAGGCTT
* *
14656491 TTCTTTCATTTTGCGCCACAAAGGCTT
1 TTCTTTCATATTACGCCACAAAGGCTT
* * *
14656518 TTCTTTCATATTATG-C-CATATGCTT
1 TTCTTTCATATTACGCCACAAAGGCTT
* *
14656543 TTCTTTCATATTACACCACAAAGGTTT
1 TTCTTTCATATTACGCCACAAAGGCTT
14656570 TTCTT
1 TTCTT
14656575 ATTTGACGTG
Statistics
Matches: 91, Mismatches: 18, Indels: 4
0.81 0.16 0.04
Matches are distributed among these distances:
25 20 0.22
26 2 0.02
27 69 0.76
ACGTcount: A:0.25, C:0.22, G:0.10, T:0.43
Consensus pattern (27 bp):
TTCTTTCATATTACGCCACAAAGGCTT
Found at i:14656562 original size:52 final size:54
Alignment explanation
Indices: 14656437--14656574 Score: 154
Period size: 52 Copynumber: 2.6 Consensus size: 54
14656427 ACAAATTCTA
* * * *
14656437 TTCTTTTATATTATGCCACAAAGGCATTCCTTTAATATTACGCCACAAAGGCTT
1 TTCTTTCATATTACGCCACAAAGGCTTTTCTTTAATATTACGCCACAAAGGCTT
* * * * * *
14656491 TTCTTTCATTTTGCGCCACAAAGGCTTTTCTTTCATATTATG-C-CATATGCTT
1 TTCTTTCATATTACGCCACAAAGGCTTTTCTTTAATATTACGCCACAAAGGCTT
* *
14656543 TTCTTTCATATTACACCACAAAGGTTTTTCTT
1 TTCTTTCATATTACGCCACAAAGGCTTTTCTT
14656575 ATTTGACGTG
Statistics
Matches: 70, Mismatches: 14, Indels: 2
0.81 0.16 0.02
Matches are distributed among these distances:
52 35 0.50
53 1 0.01
54 34 0.49
ACGTcount: A:0.25, C:0.22, G:0.10, T:0.43
Consensus pattern (54 bp):
TTCTTTCATATTACGCCACAAAGGCTTTTCTTTAATATTACGCCACAAAGGCTT
Found at i:14658755 original size:26 final size:26
Alignment explanation
Indices: 14658705--14658753 Score: 73
Period size: 25 Copynumber: 1.9 Consensus size: 26
14658695 AGGGCATTCC
14658705 TTTCATATTACGCCACAAAGGTTTCT
1 TTTCATATTACGCCACAAAGGTTTCT
* *
14658731 TTTCATATT-TGCCGCAAAGGTTT
1 TTTCATATTACGCCACAAAGGTTT
14658754 TCCTTAAGAG
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 12 0.57
26 9 0.43
ACGTcount: A:0.24, C:0.20, G:0.14, T:0.41
Consensus pattern (26 bp):
TTTCATATTACGCCACAAAGGTTTCT
Found at i:14662793 original size:17 final size:17
Alignment explanation
Indices: 14662767--14662801 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
14662757 CTTGCTTTAA
* *
14662767 ATTTTGTTATTTATTTT
1 ATTTTATTATTAATTTT
14662784 ATTTTATTATTAATTTT
1 ATTTTATTATTAATTTT
14662801 A
1 A
14662802 ATTGTGTTTA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.26, C:0.00, G:0.03, T:0.71
Consensus pattern (17 bp):
ATTTTATTATTAATTTT
Found at i:14670451 original size:20 final size:20
Alignment explanation
Indices: 14670401--14670454 Score: 63
Period size: 20 Copynumber: 2.7 Consensus size: 20
14670391 AATACTATGA
* *
14670401 ACCACTCCATTTACTTTCTT
1 ACCATTCCATTTACTTACTT
14670421 ACCATTCCATTTACTTACTT
1 ACCATTCCATTTACTTACTT
* * *
14670441 TCCTTTTCATTTAC
1 ACCATTCCATTTAC
14670455 CTAGCATAAA
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.20, C:0.31, G:0.00, T:0.48
Consensus pattern (20 bp):
ACCATTCCATTTACTTACTT
Found at i:14672550 original size:103 final size:103
Alignment explanation
Indices: 14672371--14672739 Score: 623
Period size: 103 Copynumber: 3.6 Consensus size: 103
14672361 TAGCCGTTAT
** *
14672371 TGGTGGATCCCGCACTTAGCACCACCACTGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
1 TGGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
14672436 AATCAGCACATAGCAACCCCCTTTTTATTTCAAAGATA
66 AATCAGCACATAGCAACCCCCTTTTTATTTCAAAGATA
14672474 TGGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
1 TGGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
14672539 AATCAGCACATAGCAACCCCCTTTTTATTTCAAAGATA
66 AATCAGCACATAGCAACCCCCTTTTTATTTCAAAGATA
14672577 TGGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
1 TGGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
**
14672642 AATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATA
66 AATCAGCACATAGCAACCCCCTTT-TTATTTCAAAGATA
* * * **
14672681 TGGTGGATCA-CGCACATAGCACCACCCATAAATCGGGGAATCAGCACACAGCAACCCCT
1 TGGTGGAT-ATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCT
14672740 TTTATATACA
Statistics
Matches: 254, Mismatches: 10, Indels: 3
0.95 0.04 0.01
Matches are distributed among these distances:
103 189 0.74
104 64 0.25
105 1 0.00
ACGTcount: A:0.30, C:0.30, G:0.20, T:0.20
Consensus pattern (103 bp):
TGGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
AATCAGCACATAGCAACCCCCTTTTTATTTCAAAGATA
Found at i:14673103 original size:29 final size:29
Alignment explanation
Indices: 14673070--14673133 Score: 76
Period size: 30 Copynumber: 2.2 Consensus size: 29
14673060 TAATCCACCA
14673070 CCCAACTTTTTG-AAAATTACAATTTTGCC
1 CCCAAC-TTTTGCAAAATTACAATTTTGCC
* * *
14673099 CCCAAACTTTTGCATAATTACACTTTTGTC
1 CCC-AACTTTTGCAAAATTACAATTTTGCC
14673129 CCCAA
1 CCCAA
14673134 GCTCGGAAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
29 10 0.33
30 20 0.67
ACGTcount: A:0.30, C:0.28, G:0.06, T:0.36
Consensus pattern (29 bp):
CCCAACTTTTGCAAAATTACAATTTTGCC
Found at i:14673107 original size:30 final size:30
Alignment explanation
Indices: 14673077--14673133 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
14673067 CCACCCAACT
14673077 TTTTG-AAAATTACAATTTTGCCCCCAAAC
1 TTTTGCAAAATTACAATTTTGCCCCCAAAC
* * *
14673106 TTTTGCATAATTACACTTTTGTCCCCAA
1 TTTTGCAAAATTACAATTTTGCCCCCAA
14673134 GCTCGGAAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
29 5 0.21
30 19 0.79
ACGTcount: A:0.30, C:0.25, G:0.07, T:0.39
Consensus pattern (30 bp):
TTTTGCAAAATTACAATTTTGCCCCCAAAC
Found at i:14676437 original size:18 final size:19
Alignment explanation
Indices: 14676381--14676426 Score: 74
Period size: 19 Copynumber: 2.4 Consensus size: 19
14676371 AAATTACAAA
* *
14676381 AAAAATTCAAAATATTTTT
1 AAAAATCCAAAATATTTAT
14676400 AAAAATCCAAAATATTTAT
1 AAAAATCCAAAATATTTAT
14676419 AAAAATCC
1 AAAAATCC
14676427 CATAATTTAT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
19 25 1.00
ACGTcount: A:0.57, C:0.11, G:0.00, T:0.33
Consensus pattern (19 bp):
AAAAATCCAAAATATTTAT
Found at i:14678857 original size:27 final size:26
Alignment explanation
Indices: 14678814--14678948 Score: 114
Period size: 27 Copynumber: 5.1 Consensus size: 26
14678804 AGGCTATCCC
* *
14678814 TTCATGATT-CACGACAAAGATGTTCCT
1 TTCAT-ATTGCACCACAAAGCT-TTCCT
* *
14678841 TTCATAATGCACCACAAAGGCGTTCCT
1 TTCATATTGCACCACAAA-GCTTTCCT
*
14678868 TTCATAGT-CACCACAAAGGCTTTCCT
1 TTCATATTGCACCACAAA-GCTTTCCT
* * *
14678894 TTCATATTGCTCTACAAAGGCTTTTCT
1 TTCATATTGCACCACAAA-GCTTTCCT
*
14678921 TTCATATTGCGCCACAAAGGC-TTCCT
1 TTCATATTGCACCACAAA-GCTTTCCT
14678947 TT
1 TT
14678949 ATCTATCGTG
Statistics
Matches: 92, Mismatches: 13, Indels: 7
0.82 0.12 0.06
Matches are distributed among these distances:
26 32 0.35
27 59 0.64
28 1 0.01
ACGTcount: A:0.26, C:0.27, G:0.13, T:0.34
Consensus pattern (26 bp):
TTCATATTGCACCACAAAGCTTTCCT
Found at i:14678895 original size:53 final size:53
Alignment explanation
Indices: 14678836--14678948 Score: 147
Period size: 53 Copynumber: 2.1 Consensus size: 53
14678826 GACAAAGATG
14678836 TTCCTTTCATAATGCACCACAAAGGCGTTCCTTTCATAGT-CACCACAAAGGC
1 TTCCTTTCATAATGCACCACAAAGGCGTTCCTTTCATAGTGCACCACAAAGGC
* * * * * * *
14678888 TTTCCTTTCATATTGCTCTACAAAGGCTTTTCTTTCATATTGCGCCACAAAGGC
1 -TTCCTTTCATAATGCACCACAAAGGCGTTCCTTTCATAGTGCACCACAAAGGC
14678942 TTCCTTT
1 TTCCTTT
14678949 ATCTATCGTG
Statistics
Matches: 52, Mismatches: 7, Indels: 2
0.85 0.11 0.03
Matches are distributed among these distances:
53 41 0.79
54 11 0.21
ACGTcount: A:0.24, C:0.28, G:0.12, T:0.35
Consensus pattern (53 bp):
TTCCTTTCATAATGCACCACAAAGGCGTTCCTTTCATAGTGCACCACAAAGGC
Found at i:14680310 original size:29 final size:29
Alignment explanation
Indices: 14680261--14680483 Score: 188
Period size: 29 Copynumber: 7.9 Consensus size: 29
14680251 CATTTAACTC
** * * *
14680261 AGATAGCCACAAAAACATCCTTTTAATAA
1 AGATAGCCACAAAGGCTTCCTTTTAACAG
14680290 AGATAGCCACAAAGGCTTCC-TTTAACAG
1 AGATAGCCACAAAGGCTTCCTTTTAACAG
* *
14680318 AG-TAGCCA-TAAGGCTGCCTTTTAACAG
1 AGATAGCCACAAAGGCTTCCTTTTAACAG
* * *
14680345 AGATAGCTAAAAAGGTTTCCTTTTAACAG
1 AGATAGCCACAAAGGCTTCCTTTTAACAG
* *
14680374 AAATAGGCACAAAGGCTTCC-TTTAACAG
1 AGATAGCCACAAAGGCTTCCTTTTAACAG
** * *
14680402 AGATAGCCACAAAGGCTTTTTTTTTATAG
1 AGATAGCCACAAAGGCTTCCTTTTAACAG
* * ** *
14680431 AGATCA-CCATAATGTTTTCC-TTTAACAA
1 AGAT-AGCCACAAAGGCTTCCTTTTAACAG
**
14680459 AGATAGCCATGAAGGCTTCCTTTTA
1 AGATAGCCACAAAGGCTTCCTTTTA
14680484 TAGAATCTAA
Statistics
Matches: 152, Mismatches: 35, Indels: 14
0.76 0.17 0.07
Matches are distributed among these distances:
26 8 0.05
27 17 0.11
28 56 0.37
29 70 0.46
30 1 0.01
ACGTcount: A:0.36, C:0.20, G:0.16, T:0.29
Consensus pattern (29 bp):
AGATAGCCACAAAGGCTTCCTTTTAACAG
Found at i:14680329 original size:84 final size:85
Alignment explanation
Indices: 14680251--14680410 Score: 200
Period size: 84 Copynumber: 1.9 Consensus size: 85
14680241 ATAAGGTATT
* *
14680251 CATTTAACTCAGATAGCCACAAAA-ACATCCTTTTAATA-AAGATAGCCACAAAGGCTTCCTTTA
1 CATTTAACACAGATAGCCA-AAAAGACATCCTTTTAACAGAA-ATAGCCACAAAGGCTTCCTTTA
14680314 ACAGAG-TAGCCATAAGGCTGC
64 ACAGAGATAGCCATAAGGCTGC
* * * *** *
14680335 CTTTTAACAGAGATAGCTAAAAAGGTTTCCTTTTAACAGAAATAGGCACAAAGGCTTCCTTTAAC
1 CATTTAACACAGATAGCCAAAAAGACATCCTTTTAACAGAAATAGCCACAAAGGCTTCCTTTAAC
14680400 AGAGATAGCCA
66 AGAGATAGCCA
14680411 CAAAGGCTTT
Statistics
Matches: 64, Mismatches: 9, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
83 4 0.06
84 52 0.81
85 8 0.12
ACGTcount: A:0.38, C:0.21, G:0.16, T:0.25
Consensus pattern (85 bp):
CATTTAACACAGATAGCCAAAAAGACATCCTTTTAACAGAAATAGCCACAAAGGCTTCCTTTAAC
AGAGATAGCCATAAGGCTGC
Found at i:14680406 original size:57 final size:55
Alignment explanation
Indices: 14680279--14680419 Score: 160
Period size: 55 Copynumber: 2.5 Consensus size: 55
14680269 ACAAAAACAT
* * * *
14680279 CCTTTTAATAAAGATAGCCACAAAGGCTTCCTTTAACAGAGTAGCCATAAGGCTG
1 CCTTTTAACAGAGATAGCCAAAAAGGCTTCCTTTAACAGAATAGCCATAAGGCTG
* * *
14680334 CCTTTTAACAGAGATAGCTAAAAAGGTTTCCTTTTAACAGAAATAGGCACA-AAGGCTT
1 CCTTTTAACAGAGATAGCCAAAAAGGCTTCC-TTTAACAG-AATA-GC-CATAAGGCTG
*
14680392 CC-TTTAACAGAGATAGCCACAAAGGCTT
1 CCTTTTAACAGAGATAGCCAAAAAGGCTT
14680420 TTTTTTTATA
Statistics
Matches: 72, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
55 26 0.36
56 8 0.11
57 26 0.36
58 10 0.14
59 2 0.03
ACGTcount: A:0.36, C:0.21, G:0.18, T:0.26
Consensus pattern (55 bp):
CCTTTTAACAGAGATAGCCAAAAAGGCTTCCTTTAACAGAATAGCCATAAGGCTG
Found at i:14680407 original size:28 final size:29
Alignment explanation
Indices: 14680278--14680419 Score: 152
Period size: 28 Copynumber: 5.0 Consensus size: 29
14680268 CACAAAAACA
* * *
14680278 TCCTTTTAATAAAGATAGCCACAAAGGCT
1 TCCTTTTAACAGAGATAGGCACAAAGGCT
14680307 TCC-TTTAACAGAG-TA-GC-CATAAGGCT
1 TCCTTTTAACAGAGATAGGCACA-AAGGCT
* * *
14680333 GCCTTTTAACAGAGATA-GCTAAAAAGGTT
1 TCCTTTTAACAGAGATAGGC-ACAAAGGCT
*
14680362 TCCTTTTAACAGAAATAGGCACAAAGGCT
1 TCCTTTTAACAGAGATAGGCACAAAGGCT
*
14680391 TCC-TTTAACAGAGATAGCCACAAAGGCT
1 TCCTTTTAACAGAGATAGGCACAAAGGCT
14680419 T
1 T
14680420 TTTTTTTATA
Statistics
Matches: 95, Mismatches: 12, Indels: 13
0.79 0.10 0.11
Matches are distributed among these distances:
25 2 0.02
26 9 0.09
27 12 0.13
28 36 0.38
29 33 0.35
30 3 0.03
ACGTcount: A:0.36, C:0.20, G:0.18, T:0.26
Consensus pattern (29 bp):
TCCTTTTAACAGAGATAGGCACAAAGGCT
Found at i:14689370 original size:51 final size:51
Alignment explanation
Indices: 14689201--14689391 Score: 194
Period size: 51 Copynumber: 3.8 Consensus size: 51
14689191 TGAAAGTGAA
**
14689201 AGTGATGGTCATGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCAGAA-
1 AGTGATGGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACC-GAAT
** * * *
14689252 A--GATAGGTCGTATGTGTAGTACTATGTGCAGGCTACTATGCGTACCGGAT
1 AGTGAT-GGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCGAAT
* * * * * *
14689302 AGCT-TTGATCACGTGTGTAGTACTATGTGCAGGCAACTACATGTATCGAAT
1 AG-TGATGGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCGAAT
14689353 AGTGATGGTCACATGTGTAGTACTATGT-CTAGGCTACTA
1 AGTGATGGTCACATGTGTAGTACTATGTGC-AGGCTACTA
14689392 TGTGAACTGG
Statistics
Matches: 113, Mismatches: 20, Indels: 14
0.77 0.14 0.10
Matches are distributed among these distances:
49 5 0.04
50 40 0.35
51 67 0.59
52 1 0.01
ACGTcount: A:0.26, C:0.16, G:0.27, T:0.31
Consensus pattern (51 bp):
AGTGATGGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCGAAT
Found at i:14689665 original size:37 final size:38
Alignment explanation
Indices: 14689596--14689668 Score: 103
Period size: 37 Copynumber: 1.9 Consensus size: 38
14689586 ATGTGTGAAA
* **
14689596 TTGAATTGAATATTGACTTGAAAATGGCAAAGTGAATT
1 TTGAATTGAATAGTGACTTGAAAATGAAAAAGTGAATT
*
14689634 TTGAATTGAATAGTGA-TTGAAAGTGAAAAAGTGAA
1 TTGAATTGAATAGTGACTTGAAAATGAAAAAGTGAA
14689669 ATTATGAAAA
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
37 16 0.52
38 15 0.48
ACGTcount: A:0.42, C:0.03, G:0.23, T:0.32
Consensus pattern (38 bp):
TTGAATTGAATAGTGACTTGAAAATGAAAAAGTGAATT
Found at i:14694680 original size:31 final size:31
Alignment explanation
Indices: 14694642--14694704 Score: 126
Period size: 31 Copynumber: 2.0 Consensus size: 31
14694632 CCATAGGAAT
14694642 TCGTAGGATACAAATGACATGTCATTAGGGA
1 TCGTAGGATACAAATGACATGTCATTAGGGA
14694673 TCGTAGGATACAAATGACATGTCATTAGGGA
1 TCGTAGGATACAAATGACATGTCATTAGGGA
14694704 T
1 T
14694705 TTCATGTTTC
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.35, C:0.13, G:0.25, T:0.27
Consensus pattern (31 bp):
TCGTAGGATACAAATGACATGTCATTAGGGA
Found at i:14695354 original size:26 final size:26
Alignment explanation
Indices: 14695322--14695379 Score: 107
Period size: 26 Copynumber: 2.2 Consensus size: 26
14695312 TATTTTATAA
14695322 ATTTCATTATTGAAATGGTATATTAT
1 ATTTCATTATTGAAATGGTATATTAT
14695348 ATTTCATTATTGAAATGGTATATTAT
1 ATTTCATTATTGAAATGGTATATTAT
*
14695374 GTTTCA
1 ATTTCA
14695380 GATTATCGGA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 31 1.00
ACGTcount: A:0.33, C:0.05, G:0.12, T:0.50
Consensus pattern (26 bp):
ATTTCATTATTGAAATGGTATATTAT
Found at i:14696345 original size:10 final size:10
Alignment explanation
Indices: 14696330--14696376 Score: 51
Period size: 10 Copynumber: 4.6 Consensus size: 10
14696320 TAACATGTTG
14696330 AATTTTAATT
1 AATTTTAATT
14696340 AATTTTATAATT
1 AA-TTT-TAATT
*
14696352 AATTTTGATT
1 AATTTTAATT
*
14696362 AATTTTGATT
1 AATTTTAATT
14696372 -ATTTT
1 AATTTT
14696377 CGACAGATTT
Statistics
Matches: 34, Mismatches: 1, Indels: 5
0.85 0.03 0.12
Matches are distributed among these distances:
9 5 0.15
10 16 0.47
11 6 0.18
12 7 0.21
ACGTcount: A:0.34, C:0.00, G:0.04, T:0.62
Consensus pattern (10 bp):
AATTTTAATT
Found at i:14696521 original size:22 final size:22
Alignment explanation
Indices: 14696495--14696539 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
14696485 ATTATGTGTA
*
14696495 TTAATTCATAATATAAT-TAATT
1 TTAATT-ATAATACAATCTAATT
*
14696517 TTAATTTTAATACAATCTAATT
1 TTAATTATAATACAATCTAATT
14696539 T
1 T
14696540 GGGTTAATTA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 8 0.40
22 12 0.60
ACGTcount: A:0.42, C:0.07, G:0.00, T:0.51
Consensus pattern (22 bp):
TTAATTATAATACAATCTAATT
Found at i:14702345 original size:25 final size:25
Alignment explanation
Indices: 14702311--14702361 Score: 93
Period size: 25 Copynumber: 2.0 Consensus size: 25
14702301 GAAAAGAAAA
*
14702311 AGAGAAGATATTTTCTTCTTAACCT
1 AGAGAAGATATTTTATTCTTAACCT
14702336 AGAGAAGATATTTTATTCTTAACCT
1 AGAGAAGATATTTTATTCTTAACCT
14702361 A
1 A
14702362 TCTTAAACAC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.35, C:0.14, G:0.12, T:0.39
Consensus pattern (25 bp):
AGAGAAGATATTTTATTCTTAACCT
Found at i:14703316 original size:449 final size:449
Alignment explanation
Indices: 14702476--14704723 Score: 4280
Period size: 449 Copynumber: 5.0 Consensus size: 449
14702466 AGCACCTACC
14702476 TTTGGTCCTTAACTATCTCAGCTCTCGTTTGGTTGGTTCCTAACTATTTTTCCTTACATCTTGAC
1 TTTGGTCCTTAACTATCTCAGCTCTCGTTTGGTTGGTTCCTAACTATTTTTCCTTACATCTTGAC
14702541 TAGCTTAAAGCTAACCTTATATTATACTCTACACTATTGACTTAAACTCATATCATAAAGATCAT
66 TAGCTTAAAGCTAACCTTATATTATACTCTACACTATTGACTTAAACTCATATCATAAAGATCAT
*
14702606 TTCCCTTATGTATAACGGAGTCTGCCCACTCTATGTGCCATCAAAGCTTTTGGGCGATCCTTCCT
131 TTCCCTTATGTATAATGGAGTCTGCCCACTCTATGTGCCATCAAAGCTTTTGGGCGATCCTTCCT
*
14702671 TACTAGACACACTTCTTGATCACTATGTGCCAACCTAGTGTTTCCCAACATCAATGCGTCATAGG
196 TACTAGACACACTTCTTGATCACTATGTGCCAACCTAGTGTTTGCCAACATCAATGCGTCATAGG
*
14702736 CGCACTCAAAGGGTTCTTATACTTAGTCTAGTTCTAACACTATACATATTCAAAACTTATCTCGT
261 CGTACTCAAAGGGTTCTTATACTTAGTCTAGTTCTAACACTATACATATTCAAAACTTATCTCGT
*
14702801 TCGTCTTATTTCCCTAAACAATATCCAGACACCAAGGCTTCATCGGGCGAGGTGTTACAATAGCA
326 TCGTCTTATTTCCCTAAACAGTATCCAGACACCAAGGCTTCATCGGGCGAGGTGTTACAATAGCA
*
14702866 TAACACGCATTCTATTTTCAACATCCACTCATACAATTACATAACCATCATACTATACT
391 TAACACGCATTCTATTTTCAACATTCACTCATACAATTACATAACCATCATACTATACT
*
14702925 TATGGTCCTTAACTATCTCAGCTCTCGTTTGGTTGGTTCCTAACTATTTTTCCTTACATCTTGAC
1 TTTGGTCCTTAACTATCTCAGCTCTCGTTTGGTTGGTTCCTAACTATTTTTCCTTACATCTTGAC
14702990 TAGCTTAAAGCTAACCTTATATTATACTCTACACTATTGACTTAAACTCATATCATAAAGATCAT
66 TAGCTTAAAGCTAACCTTATATTATACTCTACACTATTGACTTAAACTCATATCATAAAGATCAT
14703055 TTCCCTTATGTATAATGGAGTCTGCCCACTCTATGTGCCATCAAAGCTTTTGGGCGATCCTTCCT
131 TTCCCTTATGTATAATGGAGTCTGCCCACTCTATGTGCCATCAAAGCTTTTGGGCGATCCTTCCT
14703120 TACTAGACACACTTCTTGATCACTATGTGCCAACCTAGTGTTTGCCAACATCAATGCGTCATAGG
196 TACTAGACACACTTCTTGATCACTATGTGCCAACCTAGTGTTTGCCAACATCAATGCGTCATAGG
14703185 CGTACTCAAAGGGTTCTTATACTTAGTCTAGTTCTAACACTATACATATTCAAAACTTATCTCGT
261 CGTACTCAAAGGGTTCTTATACTTAGTCTAGTTCTAACACTATACATATTCAAAACTTATCTCGT
*
14703250 TCGTCTTATTTCCCTAAACAGTATCCAGACACCAAGGCTTCATCAGGCGAGGTGTTACAATAGCA
326 TCGTCTTATTTCCCTAAACAGTATCCAGACACCAAGGCTTCATCGGGCGAGGTGTTACAATAGCA
* *
14703315 TAACACGCATTCTATTTTCAACATTCACTTATACAATTACATAACCAGCATACTATACT
391 TAACACGCATTCTATTTTCAACATTCACTCATACAATTACATAACCATCATACTATACT
* *
14703374 TTTGGTCTTTAACTATCTCACCTCTCGTTTGGTTGGTTCCTAACTATTTTTCCTTACATCTTGAC
1 TTTGGTCCTTAACTATCTCAGCTCTCGTTTGGTTGGTTCCTAACTATTTTTCCTTACATCTTGAC
14703439 TAGCTTAAAGCTAACCTTATATTATACTCTACACTATTGACTTAAACTCATATCATAAAGATCAT
66 TAGCTTAAAGCTAACCTTATATTATACTCTACACTATTGACTTAAACTCATATCATAAAGATCAT
14703504 TTCCCTTATGTATAATGGAGTCTGCCCACTCTATGTGCCATCAAAGCTTTTGGGCGATCCTTCCT
131 TTCCCTTATGTATAATGGAGTCTGCCCACTCTATGTGCCATCAAAGCTTTTGGGCGATCCTTCCT
*
14703569 TACTAGACACACTTCTTGATCACTATGTGCCAACCTAGTGTTTGCCAATATCAATGCGTCATAGG
196 TACTAGACACACTTCTTGATCACTATGTGCCAACCTAGTGTTTGCCAACATCAATGCGTCATAGG
*
14703634 CGTACTCAAAGGGTTCTTATACTTAGTCTAGTTCTAAAACTATACATATTCAAAACTTATCTCGT
261 CGTACTCAAAGGGTTCTTATACTTAGTCTAGTTCTAACACTATACATATTCAAAACTTATCTCGT
14703699 TCGTCTTATTTCCCTAAACAGTATCCAGACACCAAGGCTTCATCGGGCGAGGTGTTACAATAGCA
326 TCGTCTTATTTCCCTAAACAGTATCCAGACACCAAGGCTTCATCGGGCGAGGTGTTACAATAGCA
*
14703764 TAACACGCATTCTATTTTCAACATCCACTCATACAATTACATAACCATCATACTATACT
391 TAACACGCATTCTATTTTCAACATTCACTCATACAATTACATAACCATCATACTATACT
14703823 TTTGGTCCTTAACTATCTCAGCTCTCGTTTGGTTGGTTCCTAACTATTTTTCCTTACATCTTGAC
1 TTTGGTCCTTAACTATCTCAGCTCTCGTTTGGTTGGTTCCTAACTATTTTTCCTTACATCTTGAC
14703888 TAGCTTAAAGCTAACCTTATATTATACTCTACACTATTGACTTAAACTCATATCATAAAGATCAT
66 TAGCTTAAAGCTAACCTTATATTATACTCTACACTATTGACTTAAACTCATATCATAAAGATCAT
14703953 TTCCCTTATGTATAATGGAGTCTGCCCACTCTATGTGCCATCAAAGCTTTTGGGCGATCCTTCCT
131 TTCCCTTATGTATAATGGAGTCTGCCCACTCTATGTGCCATCAAAGCTTTTGGGCGATCCTTCCT
*
14704018 TACTAGACACACTTCTTGATCACTATGTGCCAACCTAGTGTTTGCCAACATCAATGCGTCATGGG
196 TACTAGACACACTTCTTGATCACTATGTGCCAACCTAGTGTTTGCCAACATCAATGCGTCATAGG
14704083 CGTACTCAAAGGGTTCTTATACTTAGTCTAGTTCTAACACTATACATATTCAAAACTTATCTCGT
261 CGTACTCAAAGGGTTCTTATACTTAGTCTAGTTCTAACACTATACATATTCAAAACTTATCTCGT
*
14704148 TCGTCTTATTTCCCTAAACAGTATCCAGACACCAAGGCTTCATCAGGCGAGGTGTTACAATAGCA
326 TCGTCTTATTTCCCTAAACAGTATCCAGACACCAAGGCTTCATCGGGCGAGGTGTTACAATAGCA
*
14704213 TAACACGCATTCTATTTTCAACATTCACTTATACAATTACATAACCATCATACTATACT
391 TAACACGCATTCTATTTTCAACATTCACTCATACAATTACATAACCATCATACTATACT
* *
14704272 TTTGGTCTTTAACTATCTCACCTCTCGTTTGGTTGGTTCCTAACTATTTTTCCTTACATCTTGAC
1 TTTGGTCCTTAACTATCTCAGCTCTCGTTTGGTTGGTTCCTAACTATTTTTCCTTACATCTTGAC
14704337 TAGCTTAAAGCTAACCTTATATTATACTCTACACTATTGACTTAAACTCATATCATAAAGATCAT
66 TAGCTTAAAGCTAACCTTATATTATACTCTACACTATTGACTTAAACTCATATCATAAAGATCAT
* *
14704402 TTCCCTTATGTATAACGGAGTCTGCCCACTCTATGTTCCATCAAAGCTTTTGGGCGATCCTTCCT
131 TTCCCTTATGTATAATGGAGTCTGCCCACTCTATGTGCCATCAAAGCTTTTGGGCGATCCTTCCT
14704467 TACTAGACACACTTCTTGATCACTATGTGCCAACCTAGTGTTTGCCAACATCAATGCGTCATAGG
196 TACTAGACACACTTCTTGATCACTATGTGCCAACCTAGTGTTTGCCAACATCAATGCGTCATAGG
*
14704532 CGTACTCAAAAGGTTCTTATACTTAGTCTAGTTCTAACACTATACATATTCAAAACTTATCTCGT
261 CGTACTCAAAGGGTTCTTATACTTAGTCTAGTTCTAACACTATACATATTCAAAACTTATCTCGT
*
14704597 TCGTCTTATTTCCCTAAACAGTATCCAGACACCAAGGATTCATCGGGCGAGGTGTTACAATAGCA
326 TCGTCTTATTTCCCTAAACAGTATCCAGACACCAAGGCTTCATCGGGCGAGGTGTTACAATAGCA
*
14704662 TAACACGCTTTCTATTTTCAACATTCACTCATACAATTACATAACCATCATACTATACT
391 TAACACGCATTCTATTTTCAACATTCACTCATACAATTACATAACCATCATACTATACT
14704721 TTT
1 TTT
14704724 CTAGCTTTGG
Statistics
Matches: 1763, Mismatches: 36, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
449 1763 1.00
ACGTcount: A:0.28, C:0.25, G:0.12, T:0.35
Consensus pattern (449 bp):
TTTGGTCCTTAACTATCTCAGCTCTCGTTTGGTTGGTTCCTAACTATTTTTCCTTACATCTTGAC
TAGCTTAAAGCTAACCTTATATTATACTCTACACTATTGACTTAAACTCATATCATAAAGATCAT
TTCCCTTATGTATAATGGAGTCTGCCCACTCTATGTGCCATCAAAGCTTTTGGGCGATCCTTCCT
TACTAGACACACTTCTTGATCACTATGTGCCAACCTAGTGTTTGCCAACATCAATGCGTCATAGG
CGTACTCAAAGGGTTCTTATACTTAGTCTAGTTCTAACACTATACATATTCAAAACTTATCTCGT
TCGTCTTATTTCCCTAAACAGTATCCAGACACCAAGGCTTCATCGGGCGAGGTGTTACAATAGCA
TAACACGCATTCTATTTTCAACATTCACTCATACAATTACATAACCATCATACTATACT
Found at i:14704912 original size:229 final size:229
Alignment explanation
Indices: 14704511--14704965 Score: 734
Period size: 229 Copynumber: 2.0 Consensus size: 229
14704501 CTAGTGTTTG
14704511 CCAACATCAATGCGTCATAGGCGTACTCAAAAGGTTCTTATACTTAGTCTAGTTCTAACACTATA
1 CCAACATCAATGCGTCATAGGCGTACTCAAAAGGTTCTTATACTTAGTCTAGTTCTAACACTATA
* * *
14704576 CATATTCAAAACTTATCTCGTTCGTCTTATTTCCCTAAACAGTATCCAGACACCAAGGATTCATC
66 CATATTCAAAACTTATCTCGTTCGTCTTATTTCCCTAAAAAATATCCAGACACCAAAGATTCATC
*
14704641 GGGCGAGGTGTTACAATAGCATAACACGCTTTCTATTTTCAACATTCACTCATACAATTACATAA
131 GGACGAGGTGTTACAATAGCATAACACGCTTTCTATTTTCAACATTCACTCATACAATTACATAA
*
14704706 CCATCATACTATACTTTTCTAGCTTTGGCATTTT
196 CCAACATACTATACTTTTCTAGCTTTGGCATTTT
* * *
14704740 CCAACATCAATGCGTCATAGGCGTGCTCAAAGGGTTTTTATACTTAGTCTAGTTCTAACACTATA
1 CCAACATCAATGCGTCATAGGCGTACTCAAAAGGTTCTTATACTTAGTCTAGTTCTAACACTATA
* * * * *
14704805 CATATTCAAAAGC-TATCTCGTTTGTCTTATTTCCCTAAAAAATATCTAGCCACTAAAGCTTCAT
66 CATATTCAAAA-CTTATCTCGTTCGTCTTATTTCCCTAAAAAATATCCAGACACCAAAGATTCAT
* **
14704869 CGGACGGGGTGTTACAATAGCATAACACG-TATTCTATTTTCAACATTCACTCATACGGTTACAT
130 CGGACGAGGTGTTACAATAGCATAACACGCT-TTCTATTTTCAACATTCACTCATACAATTACAT
14704933 AACCAACATACTATACTTTTCTAGCTTTGGCAT
194 AACCAACATACTATACTTTTCTAGCTTTGGCAT
14704966 CATTATTCAA
Statistics
Matches: 208, Mismatches: 16, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
228 1 0.00
229 206 0.99
230 1 0.00
ACGTcount: A:0.31, C:0.23, G:0.13, T:0.34
Consensus pattern (229 bp):
CCAACATCAATGCGTCATAGGCGTACTCAAAAGGTTCTTATACTTAGTCTAGTTCTAACACTATA
CATATTCAAAACTTATCTCGTTCGTCTTATTTCCCTAAAAAATATCCAGACACCAAAGATTCATC
GGACGAGGTGTTACAATAGCATAACACGCTTTCTATTTTCAACATTCACTCATACAATTACATAA
CCAACATACTATACTTTTCTAGCTTTGGCATTTT
Found at i:14712334 original size:24 final size:24
Alignment explanation
Indices: 14712307--14712354 Score: 87
Period size: 24 Copynumber: 2.0 Consensus size: 24
14712297 TAATTATACG
14712307 CCAGATATGTTCAGACCAACACAT
1 CCAGATATGTTCAGACCAACACAT
*
14712331 CCAGATATGTTCAGACCAATACAT
1 CCAGATATGTTCAGACCAACACAT
14712355 ACATCACTGG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.38, C:0.27, G:0.12, T:0.23
Consensus pattern (24 bp):
CCAGATATGTTCAGACCAACACAT
Found at i:14730178 original size:11 final size:11
Alignment explanation
Indices: 14730164--14730207 Score: 52
Period size: 11 Copynumber: 4.0 Consensus size: 11
14730154 TGAGAATAAA
*
14730164 TGAGGAATGAT
1 TGAGGGATGAT
*
14730175 TGAGGGATGCT
1 TGAGGGATGAT
* *
14730186 TAAGGGATGCT
1 TGAGGGATGAT
14730197 TGAGGGATGAT
1 TGAGGGATGAT
14730208 GAATGAAGGA
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
11 28 1.00
ACGTcount: A:0.27, C:0.05, G:0.41, T:0.27
Consensus pattern (11 bp):
TGAGGGATGAT
Found at i:14733638 original size:18 final size:18
Alignment explanation
Indices: 14733607--14733645 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
14733597 AAGAGTAATC
*
14733607 TTTAAAGACCTGGT-TCT
1 TTTAAAGACATGGTATCT
14733624 TTTACAAGACATGGTATCT
1 TTTA-AAGACATGGTATCT
14733643 TTT
1 TTT
14733646 CCCGAAAATT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 4 0.21
18 9 0.47
19 6 0.32
ACGTcount: A:0.26, C:0.15, G:0.15, T:0.44
Consensus pattern (18 bp):
TTTAAAGACATGGTATCT
Found at i:14741117 original size:11 final size:12
Alignment explanation
Indices: 14741091--14741118 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
14741081 GCTTAGTGGC
14741091 TTTTGACTTGAT
1 TTTTGACTTGAT
14741103 TTTTGACTTGAT
1 TTTTGACTTGAT
14741115 TTTT
1 TTTT
14741119 AAGCAATTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.14, C:0.07, G:0.14, T:0.64
Consensus pattern (12 bp):
TTTTGACTTGAT
Found at i:14748389 original size:25 final size:25
Alignment explanation
Indices: 14748361--14748408 Score: 96
Period size: 25 Copynumber: 1.9 Consensus size: 25
14748351 AGAAAACATA
14748361 AATGTGCTAATAATCAGAGAGCACC
1 AATGTGCTAATAATCAGAGAGCACC
14748386 AATGTGCTAATAATCAGAGAGCA
1 AATGTGCTAATAATCAGAGAGCA
14748409 TGCTAAACTC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.42, C:0.17, G:0.21, T:0.21
Consensus pattern (25 bp):
AATGTGCTAATAATCAGAGAGCACC
Found at i:14749432 original size:50 final size:50
Alignment explanation
Indices: 14749315--14749658 Score: 404
Period size: 50 Copynumber: 6.9 Consensus size: 50
14749305 GAATATAACA
* * * ** * * *
14749315 TGCCAAAGCTATGTCCCAGACATAGTCTTACATGGGATGTTTCCTGTAC--
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCT-CGG
* * * ** * **
14749364 TGCCAATGCCATATCCCAGATATGGTCTTACATGGGAGTTCTCATATTAG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
* * ** *
14749414 TGCCCATGCCATGTCCCAGACATGGTCTTACGGGGGACCTCTCATCTTGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
* *
14749464 TGCCAACGTCATGTCCTAGACATGGTCTTACATGGGACCTCTCATCTCGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
* *
14749514 TGCCAACGCCATGTCCCAGACATGGTCTTACATTGGACCTCTTATCTCGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
*
14749564 TGCCAACGCCATGTCCCAGACATGGTCTTACATAGGACCTCTCATCTCGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
* * *
14749614 TGCCAATGCCATGTCCCAAACATGGTCTTACATGAGACCTCTCAT
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCAT
14749659 AATTTTAATA
Statistics
Matches: 256, Mismatches: 37, Indels: 3
0.86 0.12 0.01
Matches are distributed among these distances:
49 37 0.14
50 219 0.86
ACGTcount: A:0.22, C:0.29, G:0.21, T:0.28
Consensus pattern (50 bp):
TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
Found at i:14752600 original size:30 final size:30
Alignment explanation
Indices: 14752564--14752630 Score: 82
Period size: 30 Copynumber: 2.2 Consensus size: 30
14752554 ACTCTTAAAA
* * * *
14752564 TATTTACACTATTGATCCTTCAATTTTT-TG
1 TATTTACACT-TTAACCCCTCAATTTTTAAG
14752594 TATTTACACTTTAACCCCTCAATTTTTAAG
1 TATTTACACTTTAACCCCTCAATTTTTAAG
14752624 TATTTAC
1 TATTTAC
14752631 TCTTGGGCAA
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
29 14 0.44
30 18 0.56
ACGTcount: A:0.27, C:0.19, G:0.04, T:0.49
Consensus pattern (30 bp):
TATTTACACTTTAACCCCTCAATTTTTAAG
Found at i:14755354 original size:29 final size:30
Alignment explanation
Indices: 14755313--14755376 Score: 94
Period size: 29 Copynumber: 2.2 Consensus size: 30
14755303 TCCTTTTTCA
*
14755313 TTTTCTTTATTTTTTTATA-TTAATTAGTT
1 TTTTATTTATTTTTTTATATTTAATTAGTT
* *
14755342 TTTTATTTCTTTTTTTATATTTAATTATTT
1 TTTTATTTATTTTTTTATATTTAATTAGTT
14755372 TTTTA
1 TTTTA
14755377 AAAATATATG
Statistics
Matches: 31, Mismatches: 3, Indels: 1
0.89 0.09 0.03
Matches are distributed among these distances:
29 17 0.55
30 14 0.45
ACGTcount: A:0.20, C:0.03, G:0.02, T:0.75
Consensus pattern (30 bp):
TTTTATTTATTTTTTTATATTTAATTAGTT
Found at i:14755484 original size:21 final size:22
Alignment explanation
Indices: 14755447--14755499 Score: 74
Period size: 21 Copynumber: 2.5 Consensus size: 22
14755437 TTATTATTTT
*
14755447 TTATTTATTTATTTATATGTAG
1 TTATTTATTTATCTATATGTAG
14755469 TTATTT-TTTATCTATATGTA-
1 TTATTTATTTATCTATATGTAG
14755489 TATATTTATTT
1 T-TATTTATTT
14755500 TAGTATACAT
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
20 1 0.04
21 18 0.64
22 9 0.32
ACGTcount: A:0.26, C:0.02, G:0.06, T:0.66
Consensus pattern (22 bp):
TTATTTATTTATCTATATGTAG
Found at i:14767497 original size:11 final size:11
Alignment explanation
Indices: 14767483--14767511 Score: 58
Period size: 11 Copynumber: 2.6 Consensus size: 11
14767473 CATTCTGCAT
14767483 TCATTCAAATG
1 TCATTCAAATG
14767494 TCATTCAAATG
1 TCATTCAAATG
14767505 TCATTCA
1 TCATTCA
14767512 CACATGTCTA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.34, C:0.21, G:0.07, T:0.38
Consensus pattern (11 bp):
TCATTCAAATG
Found at i:14768213 original size:44 final size:43
Alignment explanation
Indices: 14768134--14768560 Score: 241
Period size: 44 Copynumber: 9.9 Consensus size: 43
14768124 TGCAATGGCA
* **
14768134 AATCTTATCTCCCTGAAGGTGCAGCAGAGCAGATTAAAGCCAAT
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCC-AT
* * *** *
14768178 AATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAATAAC
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCAT
* * * *
14768221 AGATCTTATCTCCCTGAAGTTGCAG-AGAGCAGATCACA-TC-T
1 A-ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCAT
* * * ** *
14768262 AGTCTTATCTTCCTGAAGTTGCAGTGGAGCAGACT-AAGGAAGA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCA-T
* * *
14768305 AAGTCTTATC-CTCCTGAAGTTCCAGT-GAGGCAGACTGAAGATGGCA-
1 AA-TCTTATCTC-CCTGAAGTTGCAGTGGA-GCAGA-TTAA-A-GCCAT
* * *
14768351 AATCTTATCTCCCCGAAGTTGCAGTGAAGCAGATTAAAGTCGAT
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAG-CCAT
* * * *
14768395 AATCCTATCTCCCTGAAGTTGCAGTGGAGCAAATTAAAACCTT
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCAT
* * * * * *
14768438 AGATCTTATCTCTCTGAAGTTGCAG-AGAACAGATCACA-TC-T
1 A-ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCAT
* * ** ** *
14768479 AGTC--ATC-CTCCTGAAGTTGCAGTGAAGCAGATCGAAGATAC
1 AATCTTATCTC-CCTGAAGTTGCAGTGGAGCAGATTAAAGCCAT
* * *
14768520 AAGTCTTATCTCCCTGAAGTTGCAGTAGAGTAGATTGAAGC
1 AA-TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGC
14768561 ACTAATTCCT
Statistics
Matches: 290, Mismatches: 68, Indels: 50
0.71 0.17 0.12
Matches are distributed among these distances:
37 1 0.00
38 15 0.05
39 8 0.03
40 24 0.08
41 11 0.04
42 5 0.02
43 27 0.09
44 165 0.57
45 25 0.09
46 5 0.02
47 1 0.00
48 3 0.01
ACGTcount: A:0.31, C:0.21, G:0.22, T:0.26
Consensus pattern (43 bp):
AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCAT
Found at i:14768312 original size:84 final size:87
Alignment explanation
Indices: 14768135--14768462 Score: 226
Period size: 84 Copynumber: 3.8 Consensus size: 87
14768125 GCAATGGCAA
* *
14768135 ATCTTATCTCCCTGAAGGTGCAGCAGAGCAGATTAAAGCCAATAATCCTATCTCCCTGAAGTTGC
1 ATCTTATCTCCCTGAAGTTGCAGCAGAGCAGATCAAAGCC-ATAATCCTATCTCCCTGAAGTTGC
* * *
14768200 AGTGGAGCGGATTAAAATAACAG
65 AGTGGAGCAGACTAAAAGAACAG
* * * * *
14768223 ATCTTATCTCCCTGAAGTTGCAG-AGAGCAGATCACA-TC-TAGTCTTATCTTCCTGAAGTTGCA
1 ATCTTATCTCCCTGAAGTTGCAGCAGAGCAGATCAAAGCCATAATCCTATCTCCCTGAAGTTGCA
14768285 GTGGAGCAGACTAAGGAAGAA-AG
66 GTGGAGCAGACTAA--AAGAACAG
* * * * * *
14768308 -TCTTATC-CTCCTGAAGTTCCAG-TGAGGCAGACTGAAGATGGCA-AATCTTATCTCCCCGAAG
1 ATCTTATCTC-CCTGAAGTTGCAGCAGA-GCAGA-TCAA-A-GCCATAATCCTATCTCCCTGAAG
* * * *
14768369 TTGCAGTGAAGCAGA-TTAAAG-TCGATA
61 TTGCAGTGGAGCAGACTAAAAGAAC-A-G
* ** * * * * * *
14768396 ATCCTATCTCCCTGAAGTTGCAGTGGAGCAAATTAAAACCTTAGATCTTATCTCTCTGAAGTTGC
1 ATCTTATCTCCCTGAAGTTGCAGCAGAGCAGATCAAAGCCATA-ATCCTATCTCCCTGAAGTTGC
14768461 AG
65 AG
14768463 AGAACAGATC
Statistics
Matches: 191, Mismatches: 32, Indels: 34
0.74 0.12 0.13
Matches are distributed among these distances:
83 1 0.01
84 54 0.28
85 7 0.04
86 11 0.06
87 15 0.08
88 48 0.25
89 52 0.27
90 3 0.02
ACGTcount: A:0.30, C:0.21, G:0.22, T:0.27
Consensus pattern (87 bp):
ATCTTATCTCCCTGAAGTTGCAGCAGAGCAGATCAAAGCCATAATCCTATCTCCCTGAAGTTGCA
GTGGAGCAGACTAAAAGAACAG
Found at i:14769895 original size:17 final size:16
Alignment explanation
Indices: 14769875--14769930 Score: 71
Period size: 17 Copynumber: 3.6 Consensus size: 16
14769865 TTCATTTTCT
14769875 TTATTTTTTTATATTAA
1 TTATTTTTTTAT-TTAA
*
14769892 TTATTTTTTTATTT-C
1 TTATTTTTTTATTTAA
*
14769907 TT-TTTTTATATTTAA
1 TTATTTTTTTATTTAA
14769922 TTATTTTTT
1 TTATTTTTT
14769931 AAAAAATATA
Statistics
Matches: 33, Mismatches: 4, Indels: 5
0.79 0.10 0.12
Matches are distributed among these distances:
14 10 0.30
15 4 0.12
16 7 0.21
17 12 0.36
ACGTcount: A:0.21, C:0.02, G:0.00, T:0.77
Consensus pattern (16 bp):
TTATTTTTTTATTTAA
Found at i:14769898 original size:15 final size:15
Alignment explanation
Indices: 14769880--14769929 Score: 57
Period size: 15 Copynumber: 3.3 Consensus size: 15
14769870 TTTCTTTATT
14769880 TTTTTATATTAATTA
1 TTTTTATATTAATTA
* **
14769895 TTTTTTTATTTCTT-
1 TTTTTATATTAATTA
14769909 TTTTTATATTTAATTA
1 TTTTTATA-TTAATTA
14769925 TTTTT
1 TTTTT
14769930 TAAAAAATAT
Statistics
Matches: 27, Mismatches: 6, Indels: 3
0.75 0.17 0.08
Matches are distributed among these distances:
14 7 0.26
15 15 0.56
16 5 0.19
ACGTcount: A:0.22, C:0.02, G:0.00, T:0.76
Consensus pattern (15 bp):
TTTTTATATTAATTA
Found at i:14769911 original size:29 final size:30
Alignment explanation
Indices: 14769869--14769930 Score: 99
Period size: 29 Copynumber: 2.1 Consensus size: 30
14769859 TCCTTTTTCA
*
14769869 TTTTCTTTATTTTTTTATA-TTAATTATTT
1 TTTTATTTATTTTTTTATATTTAATTATTT
*
14769898 TTTTATTTCTTTTTTTATATTTAATTATTT
1 TTTTATTTATTTTTTTATATTTAATTATTT
14769928 TTT
1 TTT
14769931 AAAAAATATA
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
29 17 0.57
30 13 0.43
ACGTcount: A:0.19, C:0.03, G:0.00, T:0.77
Consensus pattern (30 bp):
TTTTATTTATTTTTTTATATTTAATTATTT
Found at i:14770049 original size:25 final size:25
Alignment explanation
Indices: 14769996--14770052 Score: 69
Period size: 25 Copynumber: 2.3 Consensus size: 25
14769986 AATATAATTA
* * *
14769996 TTATTTTTTATTTATTTATATGTAG
1 TTATTTTTTATCTATATATATATAG
* *
14770021 TTATTTTTTATCTATATGTATATAT
1 TTATTTTTTATCTATATATATATAG
14770046 TTATTTT
1 TTATTTT
14770053 AGTATACATA
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.25, C:0.02, G:0.05, T:0.68
Consensus pattern (25 bp):
TTATTTTTTATCTATATATATATAG
Found at i:14772667 original size:22 final size:21
Alignment explanation
Indices: 14772642--14772684 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 21
14772632 TGGTGGTTGT
* *
14772642 TGTTTGTGGTTTACGGGTTTAA
1 TGTTTATGGTTTA-AGGTTTAA
14772664 TGTTTATGGTTTAAGGTTTAA
1 TGTTTATGGTTTAAGGTTTAA
14772685 GATTTTCGGT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
21 7 0.37
22 12 0.63
ACGTcount: A:0.19, C:0.02, G:0.28, T:0.51
Consensus pattern (21 bp):
TGTTTATGGTTTAAGGTTTAA
Found at i:14772802 original size:21 final size:21
Alignment explanation
Indices: 14772778--14772825 Score: 60
Period size: 21 Copynumber: 2.3 Consensus size: 21
14772768 TAGGATTTAA
* *
14772778 GGTTTACAGTTTGGGGTTTGG
1 GGTTTACAGTTTAGAGTTTGG
* *
14772799 GGTTTATAGTTTATAGTTTGG
1 GGTTTACAGTTTAGAGTTTGG
14772820 GGTTTA
1 GGTTTA
14772826 AGATTTACGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.15, C:0.02, G:0.35, T:0.48
Consensus pattern (21 bp):
GGTTTACAGTTTAGAGTTTGG
Found at i:14772832 original size:28 final size:28
Alignment explanation
Indices: 14772765--14772837 Score: 85
Period size: 28 Copynumber: 2.6 Consensus size: 28
14772755 TAATTGACGA
14772765 GTTTAGGATTTAAGGTTTACAGTTTGGG
1 GTTTAGGATTTAAGGTTTACAGTTTGGG
* * *
14772793 GTTTGGGGTTTATA-GTTTATAGTTTGGG
1 GTTTAGGATTTA-AGGTTTACAGTTTGGG
* *
14772821 GTTTAAGATTTACGGTT
1 GTTTAGGATTTAAGGTT
14772838 AAGGATTACA
Statistics
Matches: 36, Mismatches: 7, Indels: 4
0.77 0.15 0.09
Matches are distributed among these distances:
28 35 0.97
29 1 0.03
ACGTcount: A:0.19, C:0.03, G:0.32, T:0.47
Consensus pattern (28 bp):
GTTTAGGATTTAAGGTTTACAGTTTGGG
Found at i:14772981 original size:15 final size:15
Alignment explanation
Indices: 14772961--14772990 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
14772951 GATATTTTAG
*
14772961 AATATAAATGTAAAT
1 AATATAAATATAAAT
14772976 AATATAAATATAAAT
1 AATATAAATATAAAT
14772991 TATTATTTAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.63, C:0.00, G:0.03, T:0.33
Consensus pattern (15 bp):
AATATAAATATAAAT
Found at i:14773237 original size:21 final size:20
Alignment explanation
Indices: 14773197--14773234 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
14773187 AATATATTGA
*
14773197 TGTATTTATTTTTTAAAATG
1 TGTAATTATTTTTTAAAATG
14773217 TGTAATTATTTTTTAAAA
1 TGTAATTATTTTTTAAAA
14773235 ATGCATTACT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.34, C:0.00, G:0.08, T:0.58
Consensus pattern (20 bp):
TGTAATTATTTTTTAAAATG
Found at i:14773791 original size:19 final size:20
Alignment explanation
Indices: 14773750--14773793 Score: 63
Period size: 19 Copynumber: 2.2 Consensus size: 20
14773740 AACTGTCATC
*
14773750 TCCCCTAAATCCCTAAAATT
1 TCCCCTAAATCCCTAAAAGT
*
14773770 TCCCCT-AATCCCTAACAGT
1 TCCCCTAAATCCCTAAAAGT
14773789 TCCCC
1 TCCCC
14773794 AAACCCGACA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 16 0.73
20 6 0.27
ACGTcount: A:0.27, C:0.43, G:0.02, T:0.27
Consensus pattern (20 bp):
TCCCCTAAATCCCTAAAAGT
Found at i:14775929 original size:15 final size:15
Alignment explanation
Indices: 14775909--14775942 Score: 68
Period size: 15 Copynumber: 2.3 Consensus size: 15
14775899 TGAATGACGG
14775909 AATTCAAAGTTATTT
1 AATTCAAAGTTATTT
14775924 AATTCAAAGTTATTT
1 AATTCAAAGTTATTT
14775939 AATT
1 AATT
14775943 TACGTAATTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.41, C:0.06, G:0.06, T:0.47
Consensus pattern (15 bp):
AATTCAAAGTTATTT
Found at i:14776100 original size:27 final size:28
Alignment explanation
Indices: 14776048--14776109 Score: 108
Period size: 27 Copynumber: 2.2 Consensus size: 28
14776038 AAAAATAACT
*
14776048 AAAATATTATAACTTTTTTTTATTTACC
1 AAAATATTATAACATTTTTTTATTTACC
14776076 AAAATATTATAA-ATTTTTTTATTTACC
1 AAAATATTATAACATTTTTTTATTTACC
14776103 AAAATAT
1 AAAATAT
14776110 ACCAAAAAAA
Statistics
Matches: 33, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
27 21 0.64
28 12 0.36
ACGTcount: A:0.42, C:0.08, G:0.00, T:0.50
Consensus pattern (28 bp):
AAAATATTATAACATTTTTTTATTTACC
Found at i:14777396 original size:18 final size:18
Alignment explanation
Indices: 14777373--14777408 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
14777363 GGTGCTGCCA
*
14777373 CAGGTTTTTTTTTTTTTG
1 CAGGTTTTTGTTTTTTTG
14777391 CAGGTTTTTGTTTTTTTG
1 CAGGTTTTTGTTTTTTTG
14777409 TATATTTTGG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.06, C:0.06, G:0.19, T:0.69
Consensus pattern (18 bp):
CAGGTTTTTGTTTTTTTG
Found at i:14777404 original size:17 final size:18
Alignment explanation
Indices: 14777373--14777406 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
14777363 GGTGCTGCCA
*
14777373 CAGGTTTTTTTTTTTTTG
1 CAGGTTTTTTGTTTTTTG
14777391 CAGG-TTTTTGTTTTTT
1 CAGGTTTTTTGTTTTTT
14777407 TGTATATTTT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.06, C:0.06, G:0.18, T:0.71
Consensus pattern (18 bp):
CAGGTTTTTTGTTTTTTG
Found at i:14777440 original size:27 final size:28
Alignment explanation
Indices: 14777410--14777474 Score: 105
Period size: 28 Copynumber: 2.4 Consensus size: 28
14777400 GTTTTTTTGT
*
14777410 ATATTTTGGTAAAT-AAAAAAATTTATA
1 ATATTTTGGTAAATAAAAAAAAGTTATA
*
14777437 ATATTTTGATAAATAAAAAAAAGTTATA
1 ATATTTTGGTAAATAAAAAAAAGTTATA
14777465 ATATTTTGGT
1 ATATTTTGGT
14777475 TATTTTTTAT
Statistics
Matches: 34, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
27 13 0.38
28 21 0.62
ACGTcount: A:0.49, C:0.00, G:0.09, T:0.42
Consensus pattern (28 bp):
ATATTTTGGTAAATAAAAAAAAGTTATA
Found at i:14777825 original size:20 final size:20
Alignment explanation
Indices: 14777797--14777868 Score: 71
Period size: 20 Copynumber: 3.8 Consensus size: 20
14777787 TTCTAATTAC
*
14777797 ATAAAATTAAGATAACTTAT
1 ATAATATTAAGATAACTTAT
*
14777817 ATAATATTAAGATAAAATT-T
1 ATAATATTAAGAT-AACTTAT
* *
14777837 CT-A-ATT-ACATAACTTAT
1 ATAATATTAAGATAACTTAT
14777854 ATAATATTAAGATAA
1 ATAATATTAAGATAA
14777869 AATTTCTAAT
Statistics
Matches: 40, Mismatches: 7, Indels: 10
0.70 0.12 0.18
Matches are distributed among these distances:
16 4 0.10
17 5 0.12
18 4 0.10
19 4 0.10
20 19 0.47
21 4 0.10
ACGTcount: A:0.53, C:0.06, G:0.04, T:0.38
Consensus pattern (20 bp):
ATAATATTAAGATAACTTAT
Done.