Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr08 ID=Chr08-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 57128820
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 677448 characters in sequence are not A, C, G, or T
File 53 of 190
Found at i:14990919 original size:16 final size:17
Alignment explanation
Indices: 14990884--14990919 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 17
14990874 TAGGAAGCAT
14990884 CAAAAATAATTTCAGGCA
1 CAAAAATAATTT-AGGCA
14990902 CAAAAATAATTT-GGCA
1 CAAAAATAATTTAGGCA
14990918 CA
1 CA
14990920 TCGTATTGTT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 6 0.33
18 12 0.67
ACGTcount: A:0.50, C:0.17, G:0.11, T:0.22
Consensus pattern (17 bp):
CAAAAATAATTTAGGCA
Found at i:14995512 original size:41 final size:41
Alignment explanation
Indices: 14995421--14995514 Score: 143
Period size: 41 Copynumber: 2.3 Consensus size: 41
14995411 TCGGATACTT
* *
14995421 GACAGCTTGTGTGAGCAGCACCATGTAGCTACGTTCCGACT
1 GACAGCTTGTGTCAGCAGCACCATGTAGCTACGTTCCGACC
* *
14995462 GATAGCTTGTGTCAGCAGCACCGTGTAGCTACGTTCCGACC
1 GACAGCTTGTGTCAGCAGCACCATGTAGCTACGTTCCGACC
*
14995503 GACAACTTGTGT
1 GACAGCTTGTGT
14995515 GAGTAGACCC
Statistics
Matches: 47, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
41 47 1.00
ACGTcount: A:0.21, C:0.27, G:0.27, T:0.26
Consensus pattern (41 bp):
GACAGCTTGTGTCAGCAGCACCATGTAGCTACGTTCCGACC
Found at i:15009128 original size:17 final size:19
Alignment explanation
Indices: 15009108--15009146 Score: 55
Period size: 17 Copynumber: 2.2 Consensus size: 19
15009098 TTTTTAGCAA
15009108 ATTTTACATTTT-TAT-TT
1 ATTTTACATTTTATATATT
*
15009125 ATTTTAGATTTTATATATT
1 ATTTTACATTTTATATATT
15009144 ATT
1 ATT
15009147 CATATTAAAC
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 11 0.58
18 3 0.16
19 5 0.26
ACGTcount: A:0.28, C:0.03, G:0.03, T:0.67
Consensus pattern (19 bp):
ATTTTACATTTTATATATT
Found at i:15012794 original size:22 final size:21
Alignment explanation
Indices: 15012769--15012813 Score: 63
Period size: 21 Copynumber: 2.0 Consensus size: 21
15012759 AAGAAGAAGC
*
15012769 AAAAACGAGAAAATAAAAAGAAA
1 AAAAACCA-AAAAT-AAAAGAAA
15012792 AAAAACCAAAAATAAAAGAAA
1 AAAAACCAAAAATAAAAGAAA
15012813 A
1 A
15012814 GACGTCTACC
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 9 0.43
22 5 0.24
23 7 0.33
ACGTcount: A:0.80, C:0.07, G:0.09, T:0.04
Consensus pattern (21 bp):
AAAAACCAAAAATAAAAGAAA
Found at i:15013270 original size:6 final size:6
Alignment explanation
Indices: 15013249--15013304 Score: 53
Period size: 6 Copynumber: 9.2 Consensus size: 6
15013239 TACTTCACTT
*
15013249 GAAAAA G-AAAC G-AAAA GAAAAAA GACAAAA CGAAAAA GAAAAA GAAAAA
1 GAAAAA GAAAAA GAAAAA G-AAAAA GA-AAAA -GAAAAA GAAAAA GAAAAA
*
15013298 TAAAAA G
1 GAAAAA G
15013305 GAGAAACCAA
Statistics
Matches: 42, Mismatches: 4, Indels: 8
0.78 0.07 0.15
Matches are distributed among these distances:
5 8 0.19
6 19 0.45
7 13 0.31
8 2 0.05
ACGTcount: A:0.77, C:0.05, G:0.16, T:0.02
Consensus pattern (6 bp):
GAAAAA
Found at i:15013292 original size:20 final size:19
Alignment explanation
Indices: 15013256--15013297 Score: 59
Period size: 20 Copynumber: 2.2 Consensus size: 19
15013246 CTTGAAAAAG
15013256 AAACGAAAAGAAAAAAGACA
1 AAACGAAAAGAAAAAAGA-A
15013276 AAACGAAAA-AGAAAAAGAA
1 AAACGAAAAGA-AAAAAGAA
15013295 AAA
1 AAA
15013298 TAAAAAGGAG
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
19 5 0.24
20 16 0.76
ACGTcount: A:0.79, C:0.07, G:0.14, T:0.00
Consensus pattern (19 bp):
AAACGAAAAGAAAAAAGAA
Found at i:15013776 original size:109 final size:108
Alignment explanation
Indices: 15013640--15013836 Score: 288
Period size: 109 Copynumber: 1.8 Consensus size: 108
15013630 TTTGTATTCT
*
15013640 AGCAAAATTTGCTATCTTGATTAATTTGTTCATTTAGAGATTTCCTCTCAATAAAATTTCCATCT
1 AGCAAAATTTGCTATCTTGATTAATTTGTTCATTTAGAGATTTCCTCTCAACAAAATTT-CAT-T
15013705 T-ATCCATTGTGACAATCTTTTTCATCTTATTCATCTCGTATCTC
64 TCATCCATTGTGACAATCTTTTTCATCTTATTCATCTCGTATCTC
* ** * *
15013749 AGCAAAATTTGCTATCTTGATTGATTTGTTTGTTTAGAGCTTTGCTCTCAACAAAATTTCATTTC
1 AGCAAAATTTGCTATCTTGATTAATTTGTTCATTTAGAGATTTCCTCTCAACAAAATTTCATTTC
* * *
15013814 GTCCATTTTGATAATCTTTTTCA
66 ATCCATTGTGACAATCTTTTTCA
15013837 AGCATTTTTC
Statistics
Matches: 78, Mismatches: 9, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
107 2 0.03
108 23 0.29
109 53 0.68
ACGTcount: A:0.26, C:0.18, G:0.10, T:0.46
Consensus pattern (108 bp):
AGCAAAATTTGCTATCTTGATTAATTTGTTCATTTAGAGATTTCCTCTCAACAAAATTTCATTTC
ATCCATTGTGACAATCTTTTTCATCTTATTCATCTCGTATCTC
Found at i:15014375 original size:44 final size:44
Alignment explanation
Indices: 15014308--15014655 Score: 316
Period size: 44 Copynumber: 8.0 Consensus size: 44
15014298 AAGTCCTTAA
** * *
15014308 AGCAGATCTTGTCTTTATGTATTGG-CGTGAAGTAGATCGAAGAT
1 AGCAGATCTTGTCTTCCTATATTGGTAG-GAAGTAGATCGAAGAT
* * *
15014352 AGCAGGTCCTGTCTTCCTATATTGGTAGGAAGTGGATCGAAGA-
1 AGCAGATCTTGTCTTCCTATATTGGTAGGAAGTAGATCGAAGAT
* * *
15014395 AGCAGATCTTGTCTTCCTGTGTTGGCAGTGAAGTAGATCGAAGAT
1 AGCAGATCTTGTCTTCCTATATTGGTAG-GAAGTAGATCGAAGAT
* * * *
15014440 AGCAGGTCCTGTCTTCTTATATTGGTAGGAAGTGGATC---GAT
1 AGCAGATCTTGTCTTCCTATATTGGTAGGAAGTAGATCGAAGAT
* * * * * *
15014481 -GTAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATTGAAGAA
1 AGCAGATCTTGTCTTCCTATATTGGTAG-GAAGTAGATCGAAGAT
* * * *
15014525 AGCAGATATTGTCTTCATGTATTGG-CGTGAAGTAGATCGAAGAT
1 AGCAGATCTTGTCTTCCTATATTGGTAG-GAAGTAGATCGAAGAT
* * *
15014569 AGCAGGTCCTGTCTTCCTATATTGGTAGGAAGTGGATCGAAGAT
1 AGCAGATCTTGTCTTCCTATATTGGTAGGAAGTAGATCGAAGAT
*** *
15014613 -GCAGATCTTGTCTTCCTATACCAGTGGCGAAGTAGATCGAAGA
1 AGCAGATCTTGTCTTCCTATATTGGTAG-GAAGTAGATCGAAGA
15014656 AAACATATCT
Statistics
Matches: 240, Mismatches: 54, Indels: 20
0.76 0.17 0.06
Matches are distributed among these distances:
40 20 0.08
41 11 0.05
43 44 0.18
44 123 0.51
45 42 0.17
ACGTcount: A:0.26, C:0.15, G:0.28, T:0.30
Consensus pattern (44 bp):
AGCAGATCTTGTCTTCCTATATTGGTAGGAAGTAGATCGAAGAT
Found at i:15014567 original size:129 final size:131
Alignment explanation
Indices: 15014361--15014657 Score: 440
Period size: 129 Copynumber: 2.3 Consensus size: 131
15014351 TAGCAGGTCC
* * * * * *
15014361 TGTCTTCCTATATTGGTAG-GAAGTGGATCGAAG-AAGCAGATCTTGTCTTCCTGTGTTGGCAGT
1 TGTCTTCCTATACTGGTGGCGAAGTAGATCGAAGAAAGCAGATATTGTCTTCATGTATTGGCAGT
* *
15014424 GAAGTAGATCGAAGATAGCAGGTCCTGTCTTCTTATATTGGTAGGAAGTGGATC-GATGTAGATC
66 GAAGTAGATCGAAGATAGCAGGTCCTGTCTTCCTATATTGGTAGGAAGTGGATCAGATGCAGATC
15014488 T
131 T
* *
15014489 TGTCTTCCCATACTGGTGGCGAAGTAGATTGAAGAAAGCAGATATTGTCTTCATGTATTGGC-GT
1 TGTCTTCCTATACTGGTGGCGAAGTAGATCGAAGAAAGCAGATATTGTCTTCATGTATTGGCAGT
15014553 GAAGTAGATCGAAGATAGCAGGTCCTGTCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGA
66 GAAGTAGATCGAAGATAGCAGGTCCTGTCTTCCTATATTGGTAGGAAGTGGATC--AGATGCAGA
15014618 TCT
129 TCT
**
15014621 TGTCTTCCTATACCAGTGGCGAAGTAGATCGAAGAAA
1 TGTCTTCCTATACTGGTGGCGAAGTAGATCGAAGAAA
15014658 ACATATCTTA
Statistics
Matches: 150, Mismatches: 14, Indels: 6
0.88 0.08 0.04
Matches are distributed among these distances:
128 16 0.11
129 67 0.45
130 24 0.16
132 43 0.29
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (131 bp):
TGTCTTCCTATACTGGTGGCGAAGTAGATCGAAGAAAGCAGATATTGTCTTCATGTATTGGCAGT
GAAGTAGATCGAAGATAGCAGGTCCTGTCTTCCTATATTGGTAGGAAGTGGATCAGATGCAGATC
T
Found at i:15014886 original size:100 final size:100
Alignment explanation
Indices: 15014721--15015173 Score: 581
Period size: 100 Copynumber: 4.5 Consensus size: 100
15014711 TCCCTGGTGA
* * * *
15014721 TGCAGTGGAGCAGATTAAAGTTACGACGGTGAATCTTGCTTCCCCGACATTGCAATTAAAAAGAT
1 TGCAGTGGAACAGATTAAAGCTACAACGGCGAATCTTGCTTCCCCGACATTGCAATTAAAAAGAT
*
15014786 TGAAGCCGCAACGGCAAATCTTAC-TCTCCTGGCAG
66 TGAAGCCGCAACGGCGAATCTTACTTC-CCTGGCAG
* * * * * *
15014821 TGCAGTGGAAC-GAGTTGAAGCTACAACGACAAATCTTGTTTCCCCGACATTACAATTTAAAAGA
1 TGCAGTGGAACAGA-TTAAAGCTACAACGGCGAATCTTGCTTCCCCGACATTGCAATTAAAAAGA
* *
15014885 TTGAAGCCGCAATGGTGAATCTTACTTCCCTGGCAG
65 TTGAAGCCGCAACGGCGAATCTTACTTCCCTGGCAG
* * * * *
15014921 TGCAGTGGAGCAGATTAAAGCTACGACGGCGAATCTTGCTTCCCTGGCATTGCAATTTAAAAGAT
1 TGCAGTGGAACAGATTAAAGCTACAACGGCGAATCTTGCTTCCCCGACATTGCAATTAAAAAGAT
* *
15014986 TGAAGCCGCAACGGTGAATCTTACTTCCTTGG-AG
66 TGAAGCCGCAACGGCGAATCTTACTTCCCTGGCAG
* * * *
15015020 TTGCAGTGGAACAGATTAAAGCTACGACGGTGAATCTCGTTTCCCCGACATTGCAATTAAAAAGA
1 -TGCAGTGGAACAGATTAAAGCTACAACGGCGAATCTTGCTTCCCCGACATTGCAATTAAAAAGA
* * *
15015085 TTGAAGCTGCAACGGCTAATCTTACTTCCCTGGCGG
65 TTGAAGCCGCAACGGCGAATCTTACTTCCCTGGCAG
* * *
15015121 TGTAGTGGAACAGATTAAAGCTACAACGGTGAATCTTG-TTCCCTGACATTGCA
1 TGCAGTGGAACAGATTAAAGCTACAACGGCGAATCTTGCTTCCCCGACATTGCA
15015174 GTCAATTTGA
Statistics
Matches: 308, Mismatches: 40, Indels: 11
0.86 0.11 0.03
Matches are distributed among these distances:
99 18 0.06
100 285 0.93
101 5 0.02
ACGTcount: A:0.29, C:0.22, G:0.23, T:0.26
Consensus pattern (100 bp):
TGCAGTGGAACAGATTAAAGCTACAACGGCGAATCTTGCTTCCCCGACATTGCAATTAAAAAGAT
TGAAGCCGCAACGGCGAATCTTACTTCCCTGGCAG
Found at i:15014906 original size:50 final size:50
Alignment explanation
Indices: 15014746--15015173 Score: 236
Period size: 50 Copynumber: 8.6 Consensus size: 50
15014736 TAAAGTTACG
* * *
15014746 ACGGTGAATCTTGCTTCCCCGACATTGCAATTAAAAAGATTGAAGCCGCA
1 ACGGTGAATCTTGCTTCCCTGGCATTGCAATTTAAAAGATTGAAGCCGCA
** * * * ** * **
15014796 ACGGCAAATCTTAC-TCTCCTGGCAGTGC-AGTGGAACGAGTTGAAGCTACA
1 ACGGTGAATCTTGCTTC-CCTGGCATTGCAATTTAAAAGA-TTGAAGCCGCA
*** * * * *
15014846 ACGACAAATCTTGTTTCCCCGACATTACAATTTAAAAGATTGAAGCCGCA
1 ACGGTGAATCTTGCTTCCCTGGCATTGCAATTTAAAAGATTGAAGCCGCA
* * * * ** ** * ** *
15014896 ATGGTGAATCTTACTTCCCTGGCAGTGCAGTGGAGCAGATTAAAGCTACG
1 ACGGTGAATCTTGCTTCCCTGGCATTGCAATTTAAAAGATTGAAGCCGCA
*
15014946 ACGGCGAATCTTGCTTCCCTGGCATTGCAATTTAAAAGATTGAAGCCGCA
1 ACGGTGAATCTTGCTTCCCTGGCATTGCAATTTAAAAGATTGAAGCCGCA
* * * ** * * ** *
15014996 ACGGTGAATCTTACTTCCTTGG-AGTTGCAGTGGAACAGATTAAAGCTACG
1 ACGGTGAATCTTGCTTCCCTGGCA-TTGCAATTTAAAAGATTGAAGCCGCA
* * * * * *
15015046 ACGGTGAATCTCGTTTCCCCGACATTGCAATTAAAAAGATTGAAGCTGCA
1 ACGGTGAATCTTGCTTCCCTGGCATTGCAATTTAAAAGATTGAAGCCGCA
* ** * * ** * * **
15015096 ACGGCT-AATCTTACTTCCCTGGCGGTGTAGTGGAACAGATTAAAGCTACA
1 ACGG-TGAATCTTGCTTCCCTGGCATTGCAATTTAAAAGATTGAAGCCGCA
*
15015146 ACGGTGAATCTTG-TTCCCTGACATTGCA
1 ACGGTGAATCTTGCTTCCCTGGCATTGCA
15015174 GTCAATTTGA
Statistics
Matches: 270, Mismatches: 100, Indels: 17
0.70 0.26 0.04
Matches are distributed among these distances:
49 21 0.08
50 239 0.89
51 10 0.04
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.26
Consensus pattern (50 bp):
ACGGTGAATCTTGCTTCCCTGGCATTGCAATTTAAAAGATTGAAGCCGCA
Found at i:15015064 original size:200 final size:200
Alignment explanation
Indices: 15014721--15015173 Score: 646
Period size: 200 Copynumber: 2.3 Consensus size: 200
15014711 TCCCTGGTGA
* *
15014721 TGCAGTGGAGCAGATTAAAGTTACGACGGTGAATCTTGCTTCCCCGACATTGCAATTAAAAAGAT
1 TGCAGTGGAGCAGATTAAAGCTACGACGGTGAATCTTGCTTCCCTGACATTGCAATTAAAAAGAT
*
15014786 TGAAGCCGCAACGGCAAATCTTACTCTCCTGGCAGTGCAGTGGAACGAGTTGAAGCTACAACGAC
66 TGAAGCCGCAACGGCAAATCTTACTCTCCTGGCAGTGCAGTGGAACGAGTTAAAGCTACAACGAC
* * *
15014851 AAATCTTGTTTCCCCGACATTACAATTTAAAAGATTGAAGCCGCAATGG-TGAATCTTACTTCCC
131 AAATCTCGTTTCCCCGACATTACAATTAAAAAGATTGAAGCCGCAACGGCT-AATCTTACTTCCC
15014915 TGGCAG
195 TGGCAG
* * *
15014921 TGCAGTGGAGCAGATTAAAGCTACGACGGCGAATCTTGCTTCCCTGGCATTGCAATTTAAAAGAT
1 TGCAGTGGAGCAGATTAAAGCTACGACGGTGAATCTTGCTTCCCTGACATTGCAATTAAAAAGAT
** *
15014986 TGAAGCCGCAACGGTGAATCTTACT-TCCTTGG-AGTTGCAGTGGAAC-AGATTAAAGCTACGAC
66 TGAAGCCGCAACGGCAAATCTTACTCTCC-TGGCAG-TGCAGTGGAACGAG-TTAAAGCTACAAC
*** * *
15015048 GGTGAATCTCGTTTCCCCGACATTGCAATTAAAAAGATTGAAGCTGCAACGGCTAATCTTACTTC
128 GACAAATCTCGTTTCCCCGACATTACAATTAAAAAGATTGAAGCCGCAACGGCTAATCTTACTTC
*
15015113 CCTGGCGG
193 CCTGGCAG
* * *
15015121 TGTAGTGGAACAGATTAAAGCTACAACGGTGAATCTTG-TTCCCTGACATTGCA
1 TGCAGTGGAGCAGATTAAAGCTACGACGGTGAATCTTGCTTCCCTGACATTGCA
15015174 GTCAATTTGA
Statistics
Matches: 226, Mismatches: 23, Indels: 9
0.88 0.09 0.03
Matches are distributed among these distances:
199 21 0.09
200 204 0.90
201 1 0.00
ACGTcount: A:0.29, C:0.22, G:0.23, T:0.26
Consensus pattern (200 bp):
TGCAGTGGAGCAGATTAAAGCTACGACGGTGAATCTTGCTTCCCTGACATTGCAATTAAAAAGAT
TGAAGCCGCAACGGCAAATCTTACTCTCCTGGCAGTGCAGTGGAACGAGTTAAAGCTACAACGAC
AAATCTCGTTTCCCCGACATTACAATTAAAAAGATTGAAGCCGCAACGGCTAATCTTACTTCCCT
GGCAG
Found at i:15015286 original size:40 final size:40
Alignment explanation
Indices: 15015214--15015906 Score: 262
Period size: 40 Copynumber: 16.3 Consensus size: 40
15015204 CTGAAGTTGC
* * *
15015214 AGTGGAGCGGATTAAAACCACAGATCTTATCTCCCTAAACAGT
1 AGTGGAGCAGA-TAGAACCA-AG-TCTTATCTCCCTAAGCAGT
* * *
15015257 AGTGGAGCAGATCGCATCAAGTCTTATCTCCCTAAGCAGT
1 AGTGGAGCAGATAGAACCAAGTCTTATCTCCCTAAGCAGT
* * *
15015297 AGTGGAGCAGATAGAAAAAAAACCAA-TCCTATCTCCCTGAAGTTA-C
1 AGTGGAGCAGATAG------AACCAAGTCTTATCTCCCT-AAG-CAGT
* * *
15015343 AGTGGAGCGGATTAAAACCACAGATCTTATCTCCCTAAGCTGT
1 AGTGGAGCAGA-TAGAACCA-AG-TCTTATCTCCCTAAGCAGT
* * *
15015386 AGTGGAGCAGATCGCATCAAGTCTTATCTCCCTAAGCAGT
1 AGTGGAGCAGATAGAACCAAGTCTTATCTCCCTAAGCAGT
* * * **
15015426 AGTGGAGCAGACAGAAAAAAACCAA-TCCTAACTCCCTGAAGTTGT
1 AGTGGAGCAGATAG-----AACCAAGTCTTATCTCCCT-AAGCAGT
* * *
15015471 AGTGGAGCGGATTAAAACCACAGATCTTATCTCACTAAGCAGT
1 AGTGGAGCAGA-TAGAACCA-AG-TCTTATCTCCCTAAGCAGT
* * * **
15015514 AGTGGAGCAGATCGCATCAAGTAATATCTCCCTAAGCAGT
1 AGTGGAGCAGATAGAACCAAGTCTTATCTCCCTAAGCAGT
* * * ****
15015554 AGTGGAGCAGACAGAAAAAAAACCAA-TCCTATCTTCCTGAAGTTCC
1 AGTGGAGCAGATAG------AACCAAGTCTTATCTCCCT-AAGCAGT
* * *
15015600 AGTGGAGTAGATTAAAACCACAGATCTTATCTTCCTAAGCAGT
1 AGTGGAGCAGA-TAGAACCA-AG-TCTTATCTCCCTAAGCAGT
* * * * * * * *
15015643 AGTGGAGCCGATCGCATCAAGTCTTATTTCTCTATGTAGT
1 AGTGGAGCAGATAGAACCAAGTCTTATCTCCCTAAGCAGT
* ** * * * ** *
15015683 AGTGGAGCAGACAGAAAAAAATCCTATCTTCCTGAAGTTGC
1 AGTGGAGCAGATAGAACCAAGTCTTATCTCCCT-AAGCAGT
* *
15015724 AGTGGAGCGGATTAAAACCACAGATCTTATCTCCCTAAGCAGT
1 AGTGGAGCAGA-TAGAACCA-AG-TCTTATCTCCCTAAGCAGT
* * ** *
15015767 AGTGGAGCAGACAGAAAAAAACCAA-TCCTATCTCCCTGAAGTTGC
1 AGTGGAGCAGATAG-----AACCAAGTCTTATCTCCCT-AAGCAGT
* * * ** *
15015812 AGTGGAGCAGATTAAAATCACAGATCTTATCTCTCTAAAGTTGC
1 AGTGGAGCAGA-TAGAACCA-AG-TCTTATCTCCCT-AAGCAGT
* * * ** *
15015856 AGTAGAGCAGATCGCATTAAGTCTTATCTCCCTAAGCAAT
1 AGTGGAGCAGATAGAACCAAGTCTTATCTCCCTAAGCAGT
15015896 AGTGGAGCAGA
1 AGTGGAGCAGA
15015907 CAAAAGAAAT
Statistics
Matches: 475, Mismatches: 127, Indels: 99
0.68 0.18 0.14
Matches are distributed among these distances:
40 138 0.29
41 52 0.11
42 27 0.06
43 69 0.15
44 89 0.19
45 54 0.11
46 37 0.08
47 9 0.02
ACGTcount: A:0.34, C:0.22, G:0.20, T:0.24
Consensus pattern (40 bp):
AGTGGAGCAGATAGAACCAAGTCTTATCTCCCTAAGCAGT
Found at i:15015349 original size:129 final size:128
Alignment explanation
Indices: 15015182--15015777 Score: 948
Period size: 129 Copynumber: 4.7 Consensus size: 128
15015172 CAGTCAATTT
* *
15015182 GAAAGAAATCAATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCACAGATCTTATCTC
1 GAAAAAAACCAATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCACAGATCTTATCTC
* *
15015247 CCTAAACAGTAGTGGAGCAGATCGCATCAAGTCTTATCTCCCTAAGCAGTAGTGGAGCAGATA
66 CCTAAGCAGTAGTGGAGCAGATCGCATCAAGTCTTATCTCCCTAAGCAGTAGTGGAGCAGACA
*
15015310 GAAAAAAAACCAATCCTATCTCCCTGAAGTTACAGTGGAGCGGATTAAAACCACAGATCTTATCT
1 G-AAAAAAACCAATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCACAGATCTTATCT
*
15015375 CCCTAAGCTGTAGTGGAGCAGATCGCATCAAGTCTTATCTCCCTAAGCAGTAGTGGAGCAGACA
65 CCCTAAGCAGTAGTGGAGCAGATCGCATCAAGTCTTATCTCCCTAAGCAGTAGTGGAGCAGACA
* *
15015439 GAAAAAAACCAATCCTAACTCCCTGAAGTTGTAGTGGAGCGGATTAAAACCACAGATCTTATCTC
1 GAAAAAAACCAATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCACAGATCTTATCTC
* **
15015504 ACTAAGCAGTAGTGGAGCAGATCGCATCAAGTAATATCTCCCTAAGCAGTAGTGGAGCAGACA
66 CCTAAGCAGTAGTGGAGCAGATCGCATCAAGTCTTATCTCCCTAAGCAGTAGTGGAGCAGACA
* * **
15015567 GAAAAAAAACCAATCCTATCTTCCTGAAGTTCCAGTGGAGTAGATTAAAACCACAGATCTTATCT
1 G-AAAAAAACCAATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCACAGATCTTATCT
* * * * * *
15015632 TCCTAAGCAGTAGTGGAGCCGATCGCATCAAGTCTTATTTCTCTATGTAGTAGTGGAGCAGACA
65 CCCTAAGCAGTAGTGGAGCAGATCGCATCAAGTCTTATCTCCCTAAGCAGTAGTGGAGCAGACA
*
15015696 G--AAAAA--AATCCTATCTTCCTGAAGTTGCAGTGGAGCGGATTAAAACCACAGATCTTATCTC
1 GAAAAAAACCAATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCACAGATCTTATCTC
15015757 CCTAAGCAGTAGTGGAGCAGA
66 CCTAAGCAGTAGTGGAGCAGA
15015778 CAGAAAAAAA
Statistics
Matches: 433, Mismatches: 33, Indels: 8
0.91 0.07 0.02
Matches are distributed among these distances:
124 71 0.16
126 5 0.01
128 122 0.28
129 235 0.54
ACGTcount: A:0.34, C:0.22, G:0.21, T:0.23
Consensus pattern (128 bp):
GAAAAAAACCAATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCACAGATCTTATCTC
CCTAAGCAGTAGTGGAGCAGATCGCATCAAGTCTTATCTCCCTAAGCAGTAGTGGAGCAGACA
Found at i:15015509 original size:88 final size:87
Alignment explanation
Indices: 15015182--15015849 Score: 357
Period size: 88 Copynumber: 7.8 Consensus size: 87
15015172 CAGTCAATTT
* *
15015182 GAAAGAAATCAATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCACAGATCTTATCTC
1 GAAA-AAAACAATCCTATCTCCCTGAAGTTGTAGTGGAGCGGATTAAAACCACAGATCTTATCTC
*
15015247 CCTAAACAGTAGTGGAGCAGATC-
65 CCTAAGCAGTAGTGGAGCAGA-CA
* * * ** * * ** *
15015270 G----CATCAAGTCTTATCTCCCT-AAGCAGTAGTGGAGCAGATAGAAAAAAAACCA-ATCCTAT
1 GAAAAAAACAA-TCCTATCTCCCTGAAGTTGTAGTGGAGCGGAT--TAAAACCA-CAGATCTTAT
* * * *
15015329 CTCCCTGAAGTTA-CAGTGGAGCGGA-T
62 CTCCCT-AAG-CAGTAGTGGAGCAGACA
* ** * * * *** *
15015355 TAAAACCACAGATCTTATCTCCCT-AAGCTGTAGTGGAGCAGA-TCGCATCA-AG-TCTTATCTC
1 GAAAAAAACA-ATCCTATCTCCCTGAAGTTGTAGTGGAGCGGATTAAAACCACAGATCTTATCTC
15015416 CCTAAGCAGTAGTGGAGCAGACA
65 CCTAAGCAGTAGTGGAGCAGACA
*
15015439 GAAAAAAACCAATCCTAACTCCCTGAAGTTGTAGTGGAGCGGATTAAAACCACAGATCTTATCTC
1 GAAAAAAA-CAATCCTATCTCCCTGAAGTTGTAGTGGAGCGGATTAAAACCACAGATCTTATCTC
*
15015504 ACTAAGCAGTAGTGGAGCAGATC-
65 CCTAAGCAGTAGTGGAGCAGA-CA
* ** ** ** ** * *
15015527 GCATCAAGTAA---TATCTCCCT-AAGCAGTAGTGGAGCAGACAGAAAAAAAAC-CA-ATCCTAT
1 GAAAAAAACAATCCTATCTCCCTGAAGTTGTAGTGGAGC-G---GATTAAAACCACAGATCTTAT
* **** * *
15015586 CTTCCTGAAGTTCCAGTGGAGTAGA-T
62 CTCCCT-AAGCAGTAGTGGAGCAGACA
* ** * * ** * *** * *
15015612 TAAAACCACAGATCTTATCTTCCT-AAGCAGTAGTGGAGCCGA-TCGCATCA-AG-TCTTATTTC
1 GAAAAAAACA-ATCCTATCTCCCTGAAGTTGTAGTGGAGCGGATTAAAACCACAGATCTTATCTC
* * *
15015673 TCTATGTAGTAGTGGAGCAGACA
65 CCTAAGCAGTAGTGGAGCAGACA
* *
15015696 G--AAAAA-AATCCTATCTTCCTGAAGTTGCAGTGGAGCGGATTAAAACCACAGATCTTATCTCC
1 GAAAAAAACAATCCTATCTCCCTGAAGTTGTAGTGGAGCGGATTAAAACCACAGATCTTATCTCC
15015758 CTAAGCAGTAGTGGAGCAGACA
66 CTAAGCAGTAGTGGAGCAGACA
* * *
15015780 GAAAAAAACCAATCCTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAATCACAGATCTTATCTC
1 GAAAAAAA-CAATCCTATCTCCCTGAAGTTGTAGTGGAGCGGATTAAAACCACAGATCTTATCTC
*
15015845 TCTAA
65 CCTAA
15015850 AGTTGCAGTA
Statistics
Matches: 433, Mismatches: 105, Indels: 84
0.70 0.17 0.14
Matches are distributed among these distances:
80 12 0.03
81 15 0.03
82 8 0.02
83 61 0.14
84 88 0.20
85 49 0.11
86 41 0.09
87 12 0.03
88 90 0.21
89 56 0.13
90 1 0.00
ACGTcount: A:0.34, C:0.22, G:0.20, T:0.24
Consensus pattern (87 bp):
GAAAAAAACAATCCTATCTCCCTGAAGTTGTAGTGGAGCGGATTAAAACCACAGATCTTATCTCC
CTAAGCAGTAGTGGAGCAGACA
Found at i:15015647 original size:257 final size:256
Alignment explanation
Indices: 15015182--15015777 Score: 973
Period size: 257 Copynumber: 2.3 Consensus size: 256
15015172 CAGTCAATTT
*
15015182 GAAAGAAATCAATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCACAGATCTTATCTC
1 GAAA-AAAACAATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCACAGATCTTATCTC
* ** *
15015247 CCTAAACAGTAGTGGAGCAGATCGCATCAAGTCTTATCTCCCTAAGCAGTAGTGGAGCAGATAGA
65 CCTAAGCAGTAGTGGAGCAGATCGCATCAAGTAATATCTCCCTAAGCAGTAGTGGAGCAGACAGA
*
15015312 AAAAAAACCAATCCTATCTCCCTGAAGTTACAGTGGAGCGGATTAAAACCACAGATCTTATCTCC
130 AAAAAAACCAATCCTATCTCCCTGAAGTTACAGTGGAGCAGATTAAAACCACAGATCTTATCTCC
*
15015377 CTAAGCTGTAGTGGAGCAGATCGCATCAAGTCTTATCTCCCTAAGCAGTAGTGGAGCAGACA
195 CTAAGCAGTAGTGGAGCAGATCGCATCAAGTCTTATCTCCCTAAGCAGTAGTGGAGCAGACA
* *
15015439 GAAAAAAACCAATCCTAACTCCCTGAAGTTGTAGTGGAGCGGATTAAAACCACAGATCTTATCTC
1 GAAAAAAA-CAATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCACAGATCTTATCTC
*
15015504 ACTAAGCAGTAGTGGAGCAGATCGCATCAAGTAATATCTCCCTAAGCAGTAGTGGAGCAGACAGA
65 CCTAAGCAGTAGTGGAGCAGATCGCATCAAGTAATATCTCCCTAAGCAGTAGTGGAGCAGACAGA
* * * *
15015569 AAAAAAACCAATCCTATCTTCCTGAAGTTCCAGTGGAGTAGATTAAAACCACAGATCTTATCTTC
130 AAAAAAACCAATCCTATCTCCCTGAAGTTACAGTGGAGCAGATTAAAACCACAGATCTTATCTCC
* * * * *
15015634 CTAAGCAGTAGTGGAGCCGATCGCATCAAGTCTTATTTCTCTATGTAGTAGTGGAGCAGACA
195 CTAAGCAGTAGTGGAGCAGATCGCATCAAGTCTTATCTCCCTAAGCAGTAGTGGAGCAGACA
*
15015696 G--AAAAA-AATCCTATCTTCCTGAAGTTGCAGTGGAGCGGATTAAAACCACAGATCTTATCTCC
1 GAAAAAAACAATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCACAGATCTTATCTCC
15015758 CTAAGCAGTAGTGGAGCAGA
66 CTAAGCAGTAGTGGAGCAGA
15015778 CAGAAAAAAA
Statistics
Matches: 315, Mismatches: 23, Indels: 6
0.92 0.07 0.02
Matches are distributed among these distances:
253 72 0.23
255 5 0.02
256 3 0.01
257 235 0.75
ACGTcount: A:0.34, C:0.22, G:0.21, T:0.23
Consensus pattern (256 bp):
GAAAAAAACAATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCACAGATCTTATCTCC
CTAAGCAGTAGTGGAGCAGATCGCATCAAGTAATATCTCCCTAAGCAGTAGTGGAGCAGACAGAA
AAAAAACCAATCCTATCTCCCTGAAGTTACAGTGGAGCAGATTAAAACCACAGATCTTATCTCCC
TAAGCAGTAGTGGAGCAGATCGCATCAAGTCTTATCTCCCTAAGCAGTAGTGGAGCAGACA
Found at i:15015778 original size:213 final size:215
Alignment explanation
Indices: 15015538--15015956 Score: 594
Period size: 213 Copynumber: 2.0 Consensus size: 215
15015528 CATCAAGTAA
*
15015538 TATCTCCCTAAGCAGTAGTGGAGCAGACAGAAAAAAAACCAATCCTATCTTCCTGAAGTTCCAGT
1 TATCTCCCTAAGCAGTAGTGGAGCAGACAG-AAAAAAACCAATCCTATCTCCCTGAAGTTCCAGT
* * * *
15015603 GGAGTAGATTAAAACCACAGATCTTATCT-TCCT-AAGCAGTAGTGGAGCCGATCGCATCAAGTC
65 GGAGCAGATTAAAACCACAGATCTTATCTCT-CTAAAGCAGCAGTAGAGCAGATCGCATCAAGTC
* * * * * * * *
15015666 TTATTTCTCTATGTAGTAGTGGAGCAGACAGAA-AAA-AATCCTATCTTCCTGAAGTTGCAGTGG
129 TTATCTCCCTAAGCAATAGTGGAGCAGACAAAAGAAACAATCCTATCTCCCTGAAGTTACAGTGG
*
15015729 AGCGGATTAAAACCACAGATCT
194 AGCAGATTAAAACCACAGATCT
*
15015751 TATCTCCCTAAGCAGTAGTGGAGCAGACAGAAAAAAACCAATCCTATCTCCCTGAAGTTGCAGTG
1 TATCTCCCTAAGCAGTAGTGGAGCAGACAGAAAAAAACCAATCCTATCTCCCTGAAGTTCCAGTG
* ** *
15015816 GAGCAGATTAAAATCACAGATCTTATCTCTCTAAAGTTGCAGTAGAGCAGATCGCATTAAGTCTT
66 GAGCAGATTAAAACCACAGATCTTATCTCTCTAAAGCAGCAGTAGAGCAGATCGCATCAAGTCTT
*
15015881 ATCTCCCTAAGCAATAGTGGAGCAGACAAAAGAAATCAATCCTATCTCCCTGATGTTACAGTGGA
131 ATCTCCCTAAGCAATAGTGGAGCAGACAAAAGAAA-CAATCCTATCTCCCTGAAGTTACAGTGGA
*
15015946 GTAGATTAAAA
195 GCAGATTAAAA
15015957 ACGATGAATC
Statistics
Matches: 180, Mismatches: 21, Indels: 7
0.87 0.10 0.03
Matches are distributed among these distances:
212 61 0.34
213 82 0.46
214 3 0.02
216 34 0.19
ACGTcount: A:0.34, C:0.21, G:0.20, T:0.25
Consensus pattern (215 bp):
TATCTCCCTAAGCAGTAGTGGAGCAGACAGAAAAAAACCAATCCTATCTCCCTGAAGTTCCAGTG
GAGCAGATTAAAACCACAGATCTTATCTCTCTAAAGCAGCAGTAGAGCAGATCGCATCAAGTCTT
ATCTCCCTAAGCAATAGTGGAGCAGACAAAAGAAACAATCCTATCTCCCTGAAGTTACAGTGGAG
CAGATTAAAACCACAGATCT
Found at i:15015864 original size:44 final size:44
Alignment explanation
Indices: 15015707--15015867 Score: 141
Period size: 44 Copynumber: 3.7 Consensus size: 44
15015697 AAAAAAATCC
* * * * *
15015707 TATCTTCCTGAAGTTGCAGTGGAGCGGATTAAAACCACAGATCT
1 TATCTCCCTAAAGTTGCAGTAGAGCAGATTAAAAACACAGATCT
* * * *
15015751 TATCTCCCTAAGCAGTAGTGGAGCAGA-CAGA-AAAAAAC-CA-ATCC
1 TATCTCCCTAA--AGT--TGCAGTAGAGCAGATTAAAAACACAGATCT
* * *
15015795 TATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAATCACAGATCT
1 TATCTCCCTAAAGTTGCAGTAGAGCAGATTAAAAACACAGATCT
*
15015839 TATCTCTCTAAAGTTGCAGTAGAGCAGAT
1 TATCTCCCTAAAGTTGCAGTAGAGCAGAT
15015868 CGCATTAAGT
Statistics
Matches: 90, Mismatches: 19, Indels: 16
0.72 0.15 0.13
Matches are distributed among these distances:
40 6 0.07
41 4 0.04
42 8 0.09
43 2 0.02
44 51 0.57
45 2 0.02
46 8 0.09
47 3 0.03
48 6 0.07
ACGTcount: A:0.34, C:0.21, G:0.20, T:0.25
Consensus pattern (44 bp):
TATCTCCCTAAAGTTGCAGTAGAGCAGATTAAAAACACAGATCT
Found at i:15017635 original size:17 final size:19
Alignment explanation
Indices: 15017615--15017653 Score: 55
Period size: 17 Copynumber: 2.2 Consensus size: 19
15017605 TTTTTAACAA
15017615 ATTTTACATTTT-TAT-TT
1 ATTTTACATTTTATATATT
*
15017632 ATTTTAGATTTTATATATT
1 ATTTTACATTTTATATATT
15017651 ATT
1 ATT
15017654 CATATTAAAC
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 11 0.58
18 3 0.16
19 5 0.26
ACGTcount: A:0.28, C:0.03, G:0.03, T:0.67
Consensus pattern (19 bp):
ATTTTACATTTTATATATT
Found at i:15019504 original size:25 final size:24
Alignment explanation
Indices: 15019476--15019536 Score: 79
Period size: 24 Copynumber: 2.5 Consensus size: 24
15019466 GGCCAAAATT
*
15019476 AAAAGAAAAAAAAATTAAAACCAGG
1 AAAAGAAAAAAAAATT-AAACCAAG
*
15019501 AAAA-ATAAAAAAAATTAAACCAAT
1 AAAAGA-AAAAAAAATTAAACCAAG
15019525 AAAAGAAAAAAA
1 AAAAGAAAAAAA
15019537 TTAAAAGAAA
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
24 17 0.53
25 15 0.47
ACGTcount: A:0.77, C:0.07, G:0.07, T:0.10
Consensus pattern (24 bp):
AAAAGAAAAAAAAATTAAACCAAG
Found at i:15019528 original size:24 final size:22
Alignment explanation
Indices: 15019481--15019541 Score: 68
Period size: 22 Copynumber: 2.6 Consensus size: 22
15019471 AAATTAAAAG
*
15019481 AAAAAAAAATTAAAACCAGGAAAA
1 AAAAAAAAATT-AAACCAAG-AAA
*
15019505 ATAAAAAAAATTAAACCAATAAA
1 A-AAAAAAAATTAAACCAAGAAA
*
15019528 AGAAAAAAATTAAA
1 AAAAAAAAATTAAA
15019542 AGAAAATTAA
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
22 12 0.36
23 4 0.12
24 7 0.21
25 10 0.30
ACGTcount: A:0.75, C:0.07, G:0.05, T:0.13
Consensus pattern (22 bp):
AAAAAAAAATTAAACCAAGAAA
Found at i:15019528 original size:33 final size:34
Alignment explanation
Indices: 15019470--15019576 Score: 82
Period size: 33 Copynumber: 3.3 Consensus size: 34
15019460 AACATGGGCC
* *
15019470 AAAATTAAAAGAAAA--AAA-AATTAAAACCAGG
1 AAAAATAAAAGAAAATTAAACAAATAAAACCAGG
* * *
15019501 AAAAATAAAA-AAAATTAAACCAATAAAA-GA-A
1 AAAAATAAAAGAAAATTAAACAAATAAAACCAGG
**
15019532 AAAAATTAAAAGAAAATTAATTAAATAAAACCAGG
1 AAAAA-TAAAAGAAAATTAAACAAATAAAACCAGG
* *
15019567 GAAAAGAAAA
1 AAAAATAAAA
15019577 CACTATGCAG
Statistics
Matches: 57, Mismatches: 12, Indels: 11
0.71 0.15 0.14
Matches are distributed among these distances:
30 4 0.07
31 14 0.25
32 9 0.16
33 21 0.37
34 5 0.09
35 4 0.07
ACGTcount: A:0.72, C:0.06, G:0.08, T:0.14
Consensus pattern (34 bp):
AAAAATAAAAGAAAATTAAACAAATAAAACCAGG
Found at i:15027213 original size:50 final size:50
Alignment explanation
Indices: 15027135--15027325 Score: 197
Period size: 50 Copynumber: 3.8 Consensus size: 50
15027125 ATTTGGGTAA
15027135 AGAGGTCCCATGTAAGACCATGTTTGGGACATGGCATTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTTTGGGACATGGCATTGGCACCGAGATG
** * * *
15027185 AGAGGTCCCCCGTAAGACCATGTCTGGGACATGGCATGGGCACCGATATG
1 AGAGGTCCCATGTAAGACCATGTTTGGGACATGGCATTGGCACCGAGATG
** * * * * * *
15027235 AGAACTCCCATGTAAGACCATATTTGGGATATGGTATTGG--CGGTACAGG
1 AGAGGTCCCATGTAAGACCATGTTTGGGACATGGCATTGGCACCG-AGATG
* ** * *
15027284 AAACATCCCATGTAAGACCATGTCTGGGACATGGCTTTGGCA
1 AGAGGTCCCATGTAAGACCATGTTTGGGACATGGCATTGGCA
15027326 TGTTATTATC
Statistics
Matches: 113, Mismatches: 25, Indels: 5
0.79 0.17 0.03
Matches are distributed among these distances:
48 2 0.02
49 35 0.31
50 76 0.67
ACGTcount: A:0.27, C:0.21, G:0.29, T:0.23
Consensus pattern (50 bp):
AGAGGTCCCATGTAAGACCATGTTTGGGACATGGCATTGGCACCGAGATG
Found at i:15029467 original size:23 final size:23
Alignment explanation
Indices: 15029433--15029477 Score: 81
Period size: 23 Copynumber: 2.0 Consensus size: 23
15029423 TATGCATTGG
*
15029433 TGTAATAGCCCGAAAATTACTAC
1 TGTAATACCCCGAAAATTACTAC
15029456 TGTAATACCCCGAAAATTACTA
1 TGTAATACCCCGAAAATTACTA
15029478 TATTAAGAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.40, C:0.22, G:0.11, T:0.27
Consensus pattern (23 bp):
TGTAATACCCCGAAAATTACTAC
Found at i:15032588 original size:50 final size:50
Alignment explanation
Indices: 15032472--15033035 Score: 765
Period size: 50 Copynumber: 11.4 Consensus size: 50
15032462 ATGTGAGCCA
* *
15032472 ATGTAAGACCATGTCTGGGACATGGCATTGGCATCATTGAGATTATGAGAGGTCCC
1 ATGTAAGACCATGTCTGGGACATGGCGTTGGCA-C--CGAG---ATGAGAGGTCCC
*
15032528 ATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATAAGAGGTCCC
1 ATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATGAGAGGTCCC
15032578 ATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATGAGAGGTCCC
1 ATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATGAGAGGTCCC
* * * *
15032628 ATGTAAGACCATGTCTGAGATATGGTGTTTGCACCGAGATGAGAGGTCCC
1 ATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATGAGAGGTCCC
* *
15032678 ATGTAAGACCATGTCTGGGACATAGCGTTGGCACCGAGATGAGAGGTCCT
1 ATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATGAGAGGTCCC
* *
15032728 ATGTAAGACCATGTTTGGGACATGGCATTGGCACCGAGAT--GA-G----
1 ATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATGAGAGGTCCC
*
15032771 A-G---GACCATGTCTGGGACATGGCGTTGGCATCGAGATGAGAGGTCCC
1 ATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATGAGAGGTCCC
*
15032817 ATGTAAGACCATGTCTGAGACATGGCGTTGGCACCGAGATGAGAGGTCCC
1 ATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATGAGAGGTCCC
* *
15032867 ATGTAAGACTATGTCTGGGACATGGCGTTGGCACCGAGATGAAAGGTCCC
1 ATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATGAGAGGTCCC
* *
15032917 ATGTAAGACCATGTCTGGGACATGGCGTGGGCACCGGGATGAGAGGTCCC
1 ATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATGAGAGGTCCC
** * * * **
15032967 CCGTAAGACCATGTCT-GGACATGGCATGGGCACCGATATGAGAACTCCC
1 ATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATGAGAGGTCCC
*
15033016 ATGTAAGACCATATCTGGGA
1 ATGTAAGACCATGTCTGGGA
15033036 TATGACATTG
Statistics
Matches: 457, Mismatches: 39, Indels: 30
0.87 0.07 0.06
Matches are distributed among these distances:
39 31 0.07
41 2 0.00
42 2 0.00
43 1 0.00
46 1 0.00
47 2 0.00
48 2 0.00
49 41 0.09
50 339 0.74
53 3 0.01
55 1 0.00
56 32 0.07
ACGTcount: A:0.26, C:0.21, G:0.32, T:0.22
Consensus pattern (50 bp):
ATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATGAGAGGTCCC
Found at i:15032788 original size:39 final size:39
Alignment explanation
Indices: 15032734--15032812 Score: 131
Period size: 39 Copynumber: 2.0 Consensus size: 39
15032724 TCCTATGTAA
*
15032734 GACCATGTTTGGGACATGGCATTGGCACCGAGATGAGAG
1 GACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAG
* *
15032773 GACCATGTCTGGGACATGGCGTTGGCATCGAGATGAGAG
1 GACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAG
15032812 G
1 G
15032813 TCCCATGTAA
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
39 37 1.00
ACGTcount: A:0.24, C:0.18, G:0.38, T:0.20
Consensus pattern (39 bp):
GACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAG
Found at i:15032839 original size:89 final size:89
Alignment explanation
Indices: 15032684--15032962 Score: 369
Period size: 89 Copynumber: 3.0 Consensus size: 89
15032674 TCCCATGTAA
* * *
15032684 GACCATGTCTGGGACATAGCGTTGGCACCGAGATGAGAGGTCCTATGTAAGACCATGTTTGGGAC
1 GACCATGTCTGGGACATGGCGTTGGCACCGAGATGAGAGGTCCCATGTAAGACCATGTCTGGGAC
*
15032749 ATGGCATTGGCACCGAGATGAGAG
66 ATGGCGTTGGCACCGAGATGAGAG
* *
15032773 GACCATGTCTGGGACATGGCGTTGGCATCGAGATGAGAGGTCCCATGTAAGACCATGTCTGAGAC
1 GACCATGTCTGGGACATGGCGTTGGCACCGAGATGAGAGGTCCCATGTAAGACCATGTCTGGGAC
15032838 ATGGCGTTGGCACCGAGATGAGAGGTCCCATG
66 ATGGCGTTGGCACCGAGAT--GA-G----A-G
* *
15032870 TAAGACTATGTCTGGGACATGGCGTTGGCACCGAGATGAAAGGTCCCATGTAAGACCATGTCTGG
1 ---GACCATGTCTGGGACATGGCGTTGGCACCGAGATGAGAGGTCCCATGTAAGACCATGTCTGG
* *
15032935 GACATGGCGTGGGCACCGGGATGAGAG
63 GACATGGCGTTGGCACCGAGATGAGAG
15032962 G
1 G
15032963 TCCCCCGTAA
Statistics
Matches: 167, Mismatches: 12, Indels: 22
0.83 0.06 0.11
Matches are distributed among these distances:
89 79 0.47
91 2 0.01
92 2 0.01
93 1 0.01
96 1 0.01
97 2 0.01
98 2 0.01
100 78 0.47
ACGTcount: A:0.25, C:0.20, G:0.35, T:0.20
Consensus pattern (89 bp):
GACCATGTCTGGGACATGGCGTTGGCACCGAGATGAGAGGTCCCATGTAAGACCATGTCTGGGAC
ATGGCGTTGGCACCGAGATGAGAG
Found at i:15032904 original size:189 final size:189
Alignment explanation
Indices: 15032584--15032962 Score: 650
Period size: 189 Copynumber: 2.0 Consensus size: 189
15032574 TCCCATGTAA
*
15032584 GACCATGTCTGGGACATGGCGTTGGCACCGAGATGAGAGGTCCCATGTAAGACCATGTCTGAGAT
1 GACCATGTCTGGGACATGGCGTTGGCACCGAGATGAGAGGTCCCATGTAAGACCATGTCTGAGAC
* *
15032649 ATGGTGTTTGCACCGAGATGAGAGGTCCCATGTAAGACCATGTCTGGGACATAGCGTTGGCACCG
66 ATGGCGTTGGCACCGAGATGAGAGGTCCCATGTAAGACCATGTCTGGGACATAGCGTTGGCACCG
* * * *
15032714 AGATGAGAGGTCCTATGTAAGACCATGTTTGGGACATGGCATTGGCACCGAGATGAGAG
131 AGATGAAAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGATGAGAG
*
15032773 GACCATGTCTGGGACATGGCGTTGGCATCGAGATGAGAGGTCCCATGTAAGACCATGTCTGAGAC
1 GACCATGTCTGGGACATGGCGTTGGCACCGAGATGAGAGGTCCCATGTAAGACCATGTCTGAGAC
* *
15032838 ATGGCGTTGGCACCGAGATGAGAGGTCCCATGTAAGACTATGTCTGGGACATGGCGTTGGCACCG
66 ATGGCGTTGGCACCGAGATGAGAGGTCCCATGTAAGACCATGTCTGGGACATAGCGTTGGCACCG
* *
15032903 AGATGAAAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTGGGCACCGGGATGAGAG
131 AGATGAAAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGATGAGAG
15032962 G
1 G
15032963 TCCCCCGTAA
Statistics
Matches: 178, Mismatches: 12, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
189 178 1.00
ACGTcount: A:0.25, C:0.20, G:0.34, T:0.21
Consensus pattern (189 bp):
GACCATGTCTGGGACATGGCGTTGGCACCGAGATGAGAGGTCCCATGTAAGACCATGTCTGAGAC
ATGGCGTTGGCACCGAGATGAGAGGTCCCATGTAAGACCATGTCTGGGACATAGCGTTGGCACCG
AGATGAAAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGATGAGAG
Found at i:15032960 original size:239 final size:238
Alignment explanation
Indices: 15032534--15033009 Score: 781
Period size: 239 Copynumber: 2.0 Consensus size: 238
15032524 TCCCATGTAA
*
15032534 GACCATGTCTGGGACATGGCGTTGGCACCGAGATAAGAGGTCCCATGTAAGACCATGTCTGGGAC
1 GACCATGTCTGGGACATGGCGTTGGCACCGAGATAAGAGGTCCCATGTAAGACCATGTCTGAGAC
* * *
15032599 ATGGCGTTGGCACCGAGATGAGAGGTCCCATGTAAGACCATGTCTGAGATATGGTGTTTGCACCG
66 ATGGCGTTGGCACCGAGATGAGAGGTCCCATGTAAGACCATGTCTGAGACATGGCGTTGGCACCG
* * *
15032664 AGATGAGAGGTCCCATGTAAGACCATGTCTGGGACATAGCGTTGGCACCGAGATGAGAGGTCCTA
131 AGATGAAAGGTCCCATGTAAGACCATGTCTGGGACATAGCGTGGGCACCGAGATGAGAGGTCCCA
* * *
15032729 TGTAAGACCATGTTTGGGACATGGCATTGGCACCGAGATGAGAG
196 CGTAAGACCATGTCT-GGACATGGCATGGGCACCGAGATGAGAG
* *
15032773 GACCATGTCTGGGACATGGCGTTGGCATCGAGATGAGAGGTCCCATGTAAGACCATGTCTGAGAC
1 GACCATGTCTGGGACATGGCGTTGGCACCGAGATAAGAGGTCCCATGTAAGACCATGTCTGAGAC
* *
15032838 ATGGCGTTGGCACCGAGATGAGAGGTCCCATGTAAGACTATGTCTGGGACATGGCGTTGGCACCG
66 ATGGCGTTGGCACCGAGATGAGAGGTCCCATGTAAGACCATGTCTGAGACATGGCGTTGGCACCG
* * *
15032903 AGATGAAAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTGGGCACCGGGATGAGAGGTCCCC
131 AGATGAAAGGTCCCATGTAAGACCATGTCTGGGACATAGCGTGGGCACCGAGATGAGAGGTCCCA
*
15032968 CGTAAGACCATGTCTGGACATGGCATGGGCACCGATATGAGA
196 CGTAAGACCATGTCTGGACATGGCATGGGCACCGAGATGAGA
15033010 ACTCCCATGT
Statistics
Matches: 219, Mismatches: 18, Indels: 1
0.92 0.08 0.00
Matches are distributed among these distances:
238 25 0.11
239 194 0.89
ACGTcount: A:0.25, C:0.21, G:0.33, T:0.21
Consensus pattern (238 bp):
GACCATGTCTGGGACATGGCGTTGGCACCGAGATAAGAGGTCCCATGTAAGACCATGTCTGAGAC
ATGGCGTTGGCACCGAGATGAGAGGTCCCATGTAAGACCATGTCTGAGACATGGCGTTGGCACCG
AGATGAAAGGTCCCATGTAAGACCATGTCTGGGACATAGCGTGGGCACCGAGATGAGAGGTCCCA
CGTAAGACCATGTCTGGACATGGCATGGGCACCGAGATGAGAG
Found at i:15034611 original size:23 final size:23
Alignment explanation
Indices: 15034579--15034622 Score: 70
Period size: 23 Copynumber: 1.9 Consensus size: 23
15034569 GAGAGAAATG
*
15034579 TAATATCCCGAAAATTACTACTA
1 TAATACCCCGAAAATTACTACTA
*
15034602 TAATACCCCGAAATTTACTAC
1 TAATACCCCGAAAATTACTAC
15034623 AGTAAGAAAG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.41, C:0.25, G:0.05, T:0.30
Consensus pattern (23 bp):
TAATACCCCGAAAATTACTACTA
Found at i:15036574 original size:23 final size:22
Alignment explanation
Indices: 15036548--15036593 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 22
15036538 GAAATTGATT
15036548 TGAATTG-TGAACATGAGAAATTG
1 TGAATTGATGAA-ATGA-AAATTG
15036571 TGAATTGAATGAAATGAAAATTG
1 TGAATTG-ATGAAATGAAAATTG
15036594 AGCTTTGAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
23 13 0.62
24 4 0.19
25 4 0.19
ACGTcount: A:0.43, C:0.02, G:0.24, T:0.30
Consensus pattern (22 bp):
TGAATTGATGAAATGAAAATTG
Found at i:15044829 original size:29 final size:29
Alignment explanation
Indices: 15044786--15045016 Score: 243
Period size: 29 Copynumber: 7.9 Consensus size: 29
15044776 AGTGTGTTAA
** *
15044786 CGATGGTCGAAACCATCCTTTTTCATATT
1 CGATGGTCGTCACCATCCCTTTTCATATT
* *
15044815 CGATGGTTGTTACCATCCCTTTTCATATT
1 CGATGGTCGTCACCATCCCTTTTCATATT
** *
15044844 CGATGGTCGAAACCATCCC-TTTCAATTAAT
1 CGATGGTCGTCACCATCCCTTTTC-A-TATT
*
15044874 CGATGGTCGTCACTATCCCTTTTCATAGTT
1 CGATGGTCGTCACCATCCCTTTTCATA-TT
*
15044904 -GATGGTCGTCACCGTCCCTTTTCATAGTT
1 CGATGGTCGTCACCATCCCTTTTCATA-TT
* ** * *
15044933 -GATAGTCGAAACTATCCCTTTTCATAAT
1 CGATGGTCGTCACCATCCCTTTTCATATT
15044961 CGATGGTCGTCACCATCCCTTTTCATAGTT
1 CGATGGTCGTCACCATCCCTTTTCATA-TT
* *
15044991 TGATGGTCTTCACCATCCCTTTTCAT
1 CGATGGTCGTCACCATCCCTTTTCAT
15045017 TAATCGGTAA
Statistics
Matches: 169, Mismatches: 27, Indels: 11
0.82 0.13 0.05
Matches are distributed among these distances:
28 5 0.03
29 114 0.67
30 46 0.27
31 4 0.02
ACGTcount: A:0.21, C:0.26, G:0.15, T:0.38
Consensus pattern (29 bp):
CGATGGTCGTCACCATCCCTTTTCATATT
Found at i:15044941 original size:88 final size:88
Alignment explanation
Indices: 15044782--15045073 Score: 317
Period size: 88 Copynumber: 3.3 Consensus size: 88
15044772 ACAAAGTGTG
** * * *
15044782 TTAA-CGATGGTCGAAACCATCCTTTTTCATA-TTCGATGGTTGTTACCATCCCTTTTCATATTC
1 TTAATCGATGGTCGTCACCATCCCTTTTCATAGTT-GATGGTCGTCACCATCCCTTTTCATATTC
*
15044845 GATGGTCGAAACCATCCC-TTTCAA
65 GATAGTCGAAACCATCCCTTTTC-A
* *
15044869 TTAATCGATGGTCGTCACTATCCCTTTTCATAGTTGATGGTCGTCACCGTCCCTTTTCATAGTT-
1 TTAATCGATGGTCGTCACCATCCCTTTTCATAGTTGATGGTCGTCACCATCCCTTTTCATA-TTC
*
15044933 GATAGTCGAAACTATCCCTTTTCA
65 GATAGTCGAAACCATCCCTTTTCA
* *
15044957 -TAATCGATGGTCGTCACCATCCCTTTTCATAGTTTGATGGTCTTCACCATCCCTTTTCATTAAT
1 TTAATCGATGGTCGTCACCATCCCTTTTCATAG-TTGATGGTCGTCACCATCCCTTTTCA-TATT
* * * * *
15045021 CGGTAATCGAAACTATACATTTTCA
64 CGATAGTCGAAACCATCCCTTTTCA
* ***
15045046 -TAATAGATGGTCAAAACCATCCCTTTTC
1 TTAATCGATGGTCGTCACCATCCCTTTTC
15045074 GTTGATTGAA
Statistics
Matches: 177, Mismatches: 21, Indels: 12
0.84 0.10 0.06
Matches are distributed among these distances:
87 35 0.20
88 88 0.50
89 54 0.31
ACGTcount: A:0.24, C:0.25, G:0.14, T:0.37
Consensus pattern (88 bp):
TTAATCGATGGTCGTCACCATCCCTTTTCATAGTTGATGGTCGTCACCATCCCTTTTCATATTCG
ATAGTCGAAACCATCCCTTTTCA
Found at i:15045072 original size:29 final size:29
Alignment explanation
Indices: 15044786--15045073 Score: 236
Period size: 29 Copynumber: 9.8 Consensus size: 29
15044776 AGTGTGTTAA
* *
15044786 CGATGGTCGAAACCATCCTTTTTCATATT
1 CGATGGTCGAAACCATCCCTTTTCATAAT
* ** *
15044815 CGATGGTTGTTACCATCCCTTTTCATATT
1 CGATGGTCGAAACCATCCCTTTTCATAAT
15044844 CGATGGTCGAAACCATCCC-TTTCAATTAAT
1 CGATGGTCGAAACCATCCCTTTTC-A-TAAT
** * *
15044874 CGATGGTCGTCACTATCCCTTTTCATAGT
1 CGATGGTCGAAACCATCCCTTTTCATAAT
* ** * *
15044903 TGATGGTCGTCACCGTCCCTTTTCATAGT
1 CGATGGTCGAAACCATCCCTTTTCATAAT
* * *
15044932 TGATAGTCGAAACTATCCCTTTTCATAAT
1 CGATGGTCGAAACCATCCCTTTTCATAAT
** *
15044961 CGATGGTCGTCACCATCCCTTTTCATAGTT
1 CGATGGTCGAAACCATCCCTTTTCATA-AT
* ***
15044991 TGATGGTCTTCACCATCCCTTTTCATTAAT
1 CGATGGTCGAAACCATCCCTTTTCA-TAAT
* ** * * *
15045021 CGGTAATCGAAACTATACATTTTCATAAT
1 CGATGGTCGAAACCATCCCTTTTCATAAT
* *
15045050 AGATGGTCAAAACCATCCCTTTTC
1 CGATGGTCGAAACCATCCCTTTTC
15045074 GTTGATTGAA
Statistics
Matches: 206, Mismatches: 48, Indels: 10
0.78 0.18 0.04
Matches are distributed among these distances:
28 4 0.02
29 136 0.66
30 60 0.29
31 6 0.03
ACGTcount: A:0.24, C:0.25, G:0.14, T:0.37
Consensus pattern (29 bp):
CGATGGTCGAAACCATCCCTTTTCATAAT
Found at i:15047360 original size:23 final size:23
Alignment explanation
Indices: 15047330--15047377 Score: 96
Period size: 23 Copynumber: 2.1 Consensus size: 23
15047320 TGCATGAATT
15047330 TTCCATAACTACACAAGTGCCTC
1 TTCCATAACTACACAAGTGCCTC
15047353 TTCCATAACTACACAAGTGCCTC
1 TTCCATAACTACACAAGTGCCTC
15047376 TT
1 TT
15047378 GTATTGCTAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.29, C:0.33, G:0.08, T:0.29
Consensus pattern (23 bp):
TTCCATAACTACACAAGTGCCTC
Found at i:15051500 original size:25 final size:25
Alignment explanation
Indices: 15051438--15051504 Score: 84
Period size: 25 Copynumber: 2.7 Consensus size: 25
15051428 GACACACCAC
* *
15051438 AGCTCTTATGAGCTTACCGATTCAT
1 AGCTCGTATGAGCATACCGATTCAT
15051463 AGCTCACG-A-GAGCATACCGATTCAT
1 AGCT--CGTATGAGCATACCGATTCAT
15051488 AGCTCGTATGAGCATAC
1 AGCTCGTATGAGCATAC
15051505 ATGTACAGGA
Statistics
Matches: 36, Mismatches: 2, Indels: 8
0.78 0.04 0.17
Matches are distributed among these distances:
23 2 0.06
24 1 0.03
25 31 0.86
26 1 0.03
27 1 0.03
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.27
Consensus pattern (25 bp):
AGCTCGTATGAGCATACCGATTCAT
Found at i:15059464 original size:15 final size:15
Alignment explanation
Indices: 15059444--15059472 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
15059434 GGAAAAGGTG
15059444 GCAGTGGCCTTCCTA
1 GCAGTGGCCTTCCTA
15059459 GCAGTGGCCTTCCT
1 GCAGTGGCCTTCCT
15059473 TCAACTTGTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.10, C:0.34, G:0.28, T:0.28
Consensus pattern (15 bp):
GCAGTGGCCTTCCTA
Found at i:15075643 original size:29 final size:29
Alignment explanation
Indices: 15075610--15075673 Score: 76
Period size: 30 Copynumber: 2.2 Consensus size: 29
15075600 TAATCCACCA
15075610 CCCAACTTTTTG-AAAATTACAATTTTGCC
1 CCCAAC-TTTTGCAAAATTACAATTTTGCC
* * *
15075639 CCCAAACTTTTGCATAATTACACTTTTGTC
1 CCC-AACTTTTGCAAAATTACAATTTTGCC
15075669 CCCAA
1 CCCAA
15075674 GCTCGGAAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
29 10 0.33
30 20 0.67
ACGTcount: A:0.30, C:0.28, G:0.06, T:0.36
Consensus pattern (29 bp):
CCCAACTTTTGCAAAATTACAATTTTGCC
Found at i:15075647 original size:30 final size:30
Alignment explanation
Indices: 15075617--15075673 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
15075607 CCACCCAACT
15075617 TTTTG-AAAATTACAATTTTGCCCCCAAAC
1 TTTTGCAAAATTACAATTTTGCCCCCAAAC
* * *
15075646 TTTTGCATAATTACACTTTTGTCCCCAA
1 TTTTGCAAAATTACAATTTTGCCCCCAA
15075674 GCTCGGAAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
29 5 0.21
30 19 0.79
ACGTcount: A:0.30, C:0.25, G:0.07, T:0.39
Consensus pattern (30 bp):
TTTTGCAAAATTACAATTTTGCCCCCAAAC
Found at i:15080755 original size:130 final size:130
Alignment explanation
Indices: 15080517--15080780 Score: 483
Period size: 130 Copynumber: 2.0 Consensus size: 130
15080507 TCGTGTAATT
*
15080517 AAATTCTGCATATGTGTTTTAGTTTAATTATACTTGTATTTTAAATTGATATACATACATACCGG
1 AAATCCTGCATATGTGTTTTAGTTTAATTATACTTGTATTTTAAATTGATATACATACATACCGG
*
15080582 CTGCATATCCAACAACGTACAACTATTACCGAGCTTCATTTGAACCTTAGGAATTCGTAGGATTC
66 CTGCATATCCAACAACGTACAACTATTACCGAGCTTCATTTGAACCTTAGGAATTCGTAAGATTC
15080647 AAATCCTGCATATGTGTTTTAGTTTAATTATACTTGTATTTTAAATTGATATACATACATACCGG
1 AAATCCTGCATATGTGTTTTAGTTTAATTATACTTGTATTTTAAATTGATATACATACATACCGG
* * *
15080712 CTGCATATCTAACGACGTACAACTATTACCGAGCTTCGTTTGAACCTTAGGAATTCGTAAGATTC
66 CTGCATATCCAACAACGTACAACTATTACCGAGCTTCATTTGAACCTTAGGAATTCGTAAGATTC
15080777 AAAT
1 AAAT
15080781 GACATGTTAT
Statistics
Matches: 129, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
130 129 1.00
ACGTcount: A:0.32, C:0.17, G:0.14, T:0.37
Consensus pattern (130 bp):
AAATCCTGCATATGTGTTTTAGTTTAATTATACTTGTATTTTAAATTGATATACATACATACCGG
CTGCATATCCAACAACGTACAACTATTACCGAGCTTCATTTGAACCTTAGGAATTCGTAAGATTC
Found at i:15085347 original size:15 final size:16
Alignment explanation
Indices: 15085327--15085357 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
15085317 TTACCATATA
15085327 ATTTT-GTATAAATTT
1 ATTTTGGTATAAATTT
15085342 ATTTTGGTATAAATTT
1 ATTTTGGTATAAATTT
15085358 GGATATATTC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 5 0.33
16 10 0.67
ACGTcount: A:0.32, C:0.00, G:0.10, T:0.58
Consensus pattern (16 bp):
ATTTTGGTATAAATTT
Found at i:15090857 original size:29 final size:28
Alignment explanation
Indices: 15090799--15090876 Score: 81
Period size: 28 Copynumber: 2.8 Consensus size: 28
15090789 TAACAAAAAA
15090799 TTATTTTTTAAAT-TATGTTTTGATTATT
1 TTATTTTTTAAATATAT-TTTTGATTATT
*
15090827 TTATTTTTTAAATATATTTTAT-CTTACTT
1 TTATTTTTTAAATATATTTT-TGATTA-TT
*
15090856 TTAACTTTTTAAA-ATATTTTT
1 TT-ATTTTTTAAATATATTTTT
15090877 TCAATTTCTT
Statistics
Matches: 44, Mismatches: 2, Indels: 8
0.81 0.04 0.15
Matches are distributed among these distances:
28 20 0.45
29 15 0.34
30 9 0.20
ACGTcount: A:0.28, C:0.04, G:0.03, T:0.65
Consensus pattern (28 bp):
TTATTTTTTAAATATATTTTTGATTATT
Found at i:15094622 original size:14 final size:15
Alignment explanation
Indices: 15094586--15094628 Score: 52
Period size: 18 Copynumber: 2.7 Consensus size: 15
15094576 AACAATTGAA
15094586 ATATTT-TTTACAAT
1 ATATTTATTTACAAT
15094600 ATATTTATTTACATAATT
1 ATATTTATTTAC--AA-T
15094618 ATATTTATTTA
1 ATATTTATTTA
15094629 AATTTCTGAA
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
14 6 0.24
15 5 0.20
17 2 0.08
18 12 0.48
ACGTcount: A:0.37, C:0.05, G:0.00, T:0.58
Consensus pattern (15 bp):
ATATTTATTTACAAT
Found at i:15100125 original size:85 final size:85
Alignment explanation
Indices: 15099968--15100126 Score: 183
Period size: 85 Copynumber: 1.9 Consensus size: 85
15099958 TCACCATAGT
* * * * * * * * *
15099968 TAAGATAATGTTAGAGATCATGCCAGAATTCAATTTTGAATGATCTTGTGACATAGCTGCAATAA
1 TAAGACAATGTCAGAGATCAGGCCAGAATCCAATTTCGAATGATCCTGTGACATACCTACAACAA
15100033 CAAAAGTATTTCAAAACACG
66 CAAAAGTATTTCAAAACACG
* * ** *
15100053 TAAGACAATGTCAGAGATCAGGTCAGAATCCAATTTCGGATGATCCTGTGATGTACCTATAACAA
1 TAAGACAATGTCAGAGATCAGGCCAGAATCCAATTTCGAATGATCCTGTGACATACCTACAACAA
*
15100118 CACAAGTAT
66 CAAAAGTAT
15100127 GTTGAGCATT
Statistics
Matches: 59, Mismatches: 15, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
85 59 1.00
ACGTcount: A:0.38, C:0.16, G:0.18, T:0.28
Consensus pattern (85 bp):
TAAGACAATGTCAGAGATCAGGCCAGAATCCAATTTCGAATGATCCTGTGACATACCTACAACAA
CAAAAGTATTTCAAAACACG
Found at i:15110852 original size:13 final size:13
Alignment explanation
Indices: 15110834--15110897 Score: 58
Period size: 13 Copynumber: 4.9 Consensus size: 13
15110824 AGTTCTTCAT
15110834 TGCTTTTGAAAAG
1 TGCTTTTGAAAAG
*
15110847 TGCTTTTGAAAAA
1 TGCTTTTGAAAAG
* *
15110860 TAC-TGTGAAAAAG
1 TGCTTTTG-AAAAG
*
15110873 TGCTTTTGAGAAG
1 TGCTTTTGAAAAG
* *
15110886 TACTCTTGAAAA
1 TGCTTTTGAAAA
15110898 TTTTGGTTTA
Statistics
Matches: 39, Mismatches: 10, Indels: 4
0.74 0.19 0.08
Matches are distributed among these distances:
12 3 0.08
13 33 0.85
14 3 0.08
ACGTcount: A:0.36, C:0.09, G:0.20, T:0.34
Consensus pattern (13 bp):
TGCTTTTGAAAAG
Found at i:15110897 original size:26 final size:25
Alignment explanation
Indices: 15110838--15110897 Score: 75
Period size: 26 Copynumber: 2.3 Consensus size: 25
15110828 CTTCATTGCT
15110838 TTTGAAAAGTGCTTTTGAAAAATAC
1 TTTGAAAAGTGCTTTTGAAAAATAC
* * *
15110863 TGTGAAAAAGTGCTTTTGAGAAGTAC
1 TTTG-AAAAGTGCTTTTGAAAAATAC
15110889 TCTTGAAAA
1 T-TTGAAAA
15110898 TTTTGGTTTA
Statistics
Matches: 29, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
25 3 0.10
26 24 0.83
27 2 0.07
ACGTcount: A:0.38, C:0.08, G:0.20, T:0.33
Consensus pattern (25 bp):
TTTGAAAAGTGCTTTTGAAAAATAC
Found at i:15111575 original size:30 final size:30
Alignment explanation
Indices: 15111539--15111599 Score: 122
Period size: 30 Copynumber: 2.0 Consensus size: 30
15111529 TAGCAGAGTC
15111539 TCCACTAAAATTGCATTATCACATTCTAGT
1 TCCACTAAAATTGCATTATCACATTCTAGT
15111569 TCCACTAAAATTGCATTATCACATTCTAGT
1 TCCACTAAAATTGCATTATCACATTCTAGT
15111599 T
1 T
15111600 ATACTTGCCT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.33, C:0.23, G:0.07, T:0.38
Consensus pattern (30 bp):
TCCACTAAAATTGCATTATCACATTCTAGT
Found at i:15117486 original size:21 final size:24
Alignment explanation
Indices: 15117461--15117503 Score: 65
Period size: 21 Copynumber: 1.9 Consensus size: 24
15117451 AAAGTTTTTA
15117461 TAAATTT-A-TAATAT-TAAATTT
1 TAAATTTAATTAATATATAAATTT
15117482 TAAATTTAATTAATATATAAAT
1 TAAATTTAATTAATATATAAAT
15117504 GTAACACTAA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
21 7 0.37
22 1 0.05
23 6 0.32
24 5 0.26
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (24 bp):
TAAATTTAATTAATATATAAATTT
Found at i:15117679 original size:11 final size:11
Alignment explanation
Indices: 15117649--15117687 Score: 53
Period size: 11 Copynumber: 3.5 Consensus size: 11
15117639 TACTTTCGTT
15117649 ATTATGTAAT-A
1 ATTAT-TAATAA
*
15117660 ATGATTAATAA
1 ATTATTAATAA
15117671 ATTATTAATAA
1 ATTATTAATAA
15117682 ATTATT
1 ATTATT
15117688 TTAATGTTAA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
10 4 0.16
11 21 0.84
ACGTcount: A:0.49, C:0.00, G:0.05, T:0.46
Consensus pattern (11 bp):
ATTATTAATAA
Found at i:15119065 original size:6 final size:7
Alignment explanation
Indices: 15119046--15119070 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
15119036 TAAAAAATTC
15119046 TATTTTT
1 TATTTTT
15119053 TATTTTT
1 TATTTTT
15119060 TATTTTT
1 TATTTTT
15119067 TATT
1 TATT
15119071 ATGAATGATC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.16, C:0.00, G:0.00, T:0.84
Consensus pattern (7 bp):
TATTTTT
Found at i:15124051 original size:28 final size:27
Alignment explanation
Indices: 15124002--15124091 Score: 85
Period size: 28 Copynumber: 3.3 Consensus size: 27
15123992 TGTCCTAGTA
* *
15124002 GACTTA-CTCGTGTTTACTGTCCTGACG
1 GACTTACCTTGTGTTTACTGTCC-AACG
*
15124029 GACTTACCTTGTGTTTACTGTCCCA-G
1 GACTTACCTTGTGTTTACTGTCCAACG
* *
15124055 TGAACTTACCTTGCGTTTATTGTCCCAACG
1 -G-ACTTACCTTGTGTTTACTGT-CCAACG
15124085 GACTTAC
1 GACTTAC
15124092 TCTGTTTTAT
Statistics
Matches: 53, Mismatches: 5, Indels: 9
0.79 0.07 0.13
Matches are distributed among these distances:
26 1 0.02
27 8 0.15
28 39 0.74
29 4 0.08
30 1 0.02
ACGTcount: A:0.18, C:0.27, G:0.19, T:0.37
Consensus pattern (27 bp):
GACTTACCTTGTGTTTACTGTCCAACG
Found at i:15125779 original size:23 final size:23
Alignment explanation
Indices: 15125752--15125797 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
15125742 AATGCTTCTG
15125752 CAAATCCTAAAGTGCTCATGCTC
1 CAAATCCTAAAGTGCTCATGCTC
15125775 CAAATCCTAAAGTGCTCATGCTC
1 CAAATCCTAAAGTGCTCATGCTC
15125798 TAACTCTACC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.30, C:0.30, G:0.13, T:0.26
Consensus pattern (23 bp):
CAAATCCTAAAGTGCTCATGCTC
Found at i:15132296 original size:43 final size:41
Alignment explanation
Indices: 15132219--15132349 Score: 120
Period size: 41 Copynumber: 3.1 Consensus size: 41
15132209 AAACACATAT
* * * * * *
15132219 ATCACATACAATGCC-ATATCCCATATATGATCTTACATGTT
1 ATCACATACGATGCCAATATCCCAGACAGGGTCTTACATG-A
**
15132260 ATCACATATCGATGCCTCTATCCCAGACAGGGTCTTACATGA
1 ATCACATA-CGATGCCAATATCCCAGACAGGGTCTTACATGA
* * * *
15132302 ATCATATACGGTGCCAATATCCCAGACATGGTCTTACACGAA
1 ATCACATACGATGCCAATATCCCAGACAGGGTCTTACATG-A
15132344 ATCACA
1 ATCACA
15132350 CCTTGAAAGT
Statistics
Matches: 73, Mismatches: 14, Indels: 5
0.79 0.15 0.05
Matches are distributed among these distances:
41 35 0.48
42 19 0.26
43 19 0.26
ACGTcount: A:0.33, C:0.27, G:0.13, T:0.27
Consensus pattern (41 bp):
ATCACATACGATGCCAATATCCCAGACAGGGTCTTACATGA
Found at i:15138083 original size:51 final size:51
Alignment explanation
Indices: 15138023--15138125 Score: 206
Period size: 51 Copynumber: 2.0 Consensus size: 51
15138013 AAGACCTAAG
15138023 AAAGGTTTTACTTGGTGATTATTAATTGAATTGACTATGATTGTACAATTT
1 AAAGGTTTTACTTGGTGATTATTAATTGAATTGACTATGATTGTACAATTT
15138074 AAAGGTTTTACTTGGTGATTATTAATTGAATTGACTATGATTGTACAATTT
1 AAAGGTTTTACTTGGTGATTATTAATTGAATTGACTATGATTGTACAATTT
15138125 A
1 A
15138126 TGTTTAATTT
Statistics
Matches: 52, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
51 52 1.00
ACGTcount: A:0.32, C:0.06, G:0.17, T:0.45
Consensus pattern (51 bp):
AAAGGTTTTACTTGGTGATTATTAATTGAATTGACTATGATTGTACAATTT
Found at i:15143894 original size:25 final size:26
Alignment explanation
Indices: 15143848--15143896 Score: 64
Period size: 26 Copynumber: 1.9 Consensus size: 26
15143838 TTCACCATAT
* * *
15143848 AGGCTTTCCAGATAACTTTGCCACTA
1 AGGCTTCCCAAATAACTATGCCACTA
15143874 AGGCTTCCCAAATAA-TATGCCAC
1 AGGCTTCCCAAATAACTATGCCAC
15143897 ATAGTCTTTT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
25 7 0.35
26 13 0.65
ACGTcount: A:0.31, C:0.29, G:0.14, T:0.27
Consensus pattern (26 bp):
AGGCTTCCCAAATAACTATGCCACTA
Found at i:15143939 original size:50 final size:50
Alignment explanation
Indices: 15143868--15143979 Score: 134
Period size: 50 Copynumber: 2.2 Consensus size: 50
15143858 GATAACTTTG
* ** * *
15143868 CCACTAAGGCTTCCCAAATAATATGCCACATAGTCTTTTCAGATAATTAC
1 CCACAAAGGCTTCCCAAATAATATGCCACATAGGATTTTCAGATAACTAA
* * * **
15143918 CCACAAAGGCTTCCTAGATAATATGTCACATAGGATTTTTGGATAACTAA
1 CCACAAAGGCTTCCCAAATAATATGCCACATAGGATTTTCAGATAACTAA
15143968 CCACAAAGGCTT
1 CCACAAAGGCTT
15143980 GTTTGGTTTC
Statistics
Matches: 52, Mismatches: 10, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
50 52 1.00
ACGTcount: A:0.35, C:0.23, G:0.13, T:0.29
Consensus pattern (50 bp):
CCACAAAGGCTTCCCAAATAATATGCCACATAGGATTTTCAGATAACTAA
Found at i:15150422 original size:75 final size:75
Alignment explanation
Indices: 15150327--15150520 Score: 226
Period size: 75 Copynumber: 2.6 Consensus size: 75
15150317 TGTATTTACA
* * * * * * *
15150327 TGTATATGTTCTTGTATTGAGTTTGGGTATGATTTTTATGTAAGTTTATATGAAATTTGGAAATG
1 TGTATATGTTATTGTATTGAGTTTAGGTATGACTTTTATATAAGGTTATATGAAATTTAGAAATA
15150392 CAAATATAAT
66 CAAATATAAT
* **
15150402 TGTATATGTTATTGTTTTGAGTTTAGGTATGACTTTTATATAAGGTTATATGAGGTTTAGAAATA
1 TGTATATGTTATTGTATTGAGTTTAGGTATGACTTTTATATAAGGTTATATGAAATTTAGAAATA
* *
15150467 TAAATATATT
66 CAAATATAAT
* * ** * *
15150477 TGAATATGTTCTTGCGTTAAATTTAGGTATGACTTTTATATAAG
1 TGTATATGTTATTGTATTGAGTTTAGGTATGACTTTTATATAAG
15150521 TGTGTATGAG
Statistics
Matches: 101, Mismatches: 18, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
75 101 1.00
ACGTcount: A:0.31, C:0.03, G:0.19, T:0.47
Consensus pattern (75 bp):
TGTATATGTTATTGTATTGAGTTTAGGTATGACTTTTATATAAGGTTATATGAAATTTAGAAATA
CAAATATAAT
Found at i:15162953 original size:16 final size:17
Alignment explanation
Indices: 15162932--15162964 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
15162922 TCAATTAATC
15162932 TAATT-AACCAAAAATT
1 TAATTAAACCAAAAATT
*
15162948 TAATTAAACTAAAAATT
1 TAATTAAACCAAAAATT
15162965 AACCAATTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 5 0.33
17 10 0.67
ACGTcount: A:0.58, C:0.09, G:0.00, T:0.33
Consensus pattern (17 bp):
TAATTAAACCAAAAATT
Found at i:15163718 original size:22 final size:22
Alignment explanation
Indices: 15163690--15163731 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
15163680 TGTTCGTCAC
15163690 TCGGTGTCGCGACACCATAGGA
1 TCGGTGTCGCGACACCATAGGA
* *
15163712 TCGGTGTCGTGACACTATAG
1 TCGGTGTCGCGACACCATAG
15163732 TCGTCCCTCA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.21, C:0.24, G:0.31, T:0.24
Consensus pattern (22 bp):
TCGGTGTCGCGACACCATAGGA
Found at i:15170760 original size:100 final size:100
Alignment explanation
Indices: 15170644--15170828 Score: 327
Period size: 100 Copynumber: 1.8 Consensus size: 100
15170634 TGCAACTTCT
*
15170644 TTCTTTTCCCAAAACTTGTACAACTTTTACAAGGAAAAAATATTTT-AGTTTAAATCTAGGAATT
1 TTCTTTTCCCAAAACTTGTACAACTTTTACAAGGAAAAAATATTTTAAGTTTAAATCTAGGAAAT
*
15170708 AGGCTTGATGGTACTTTTACCCCATCAACTTTTTC
66 ACGCTTGATGGTACTTTTACCCCATCAACTTTTTC
15170743 TTCTTTTCCCTAAAACTTGTACAACTTTTACAAGGAAAAAATATTTTAAAGTTTAAATCTAGGAA
1 TTCTTTTCCC-AAAACTTGTACAACTTTTACAAGGAAAAAATATTTT-AAGTTTAAATCTAGGAA
15170808 ATACGCTTGATGGTACTTTTA
64 ATACGCTTGATGGTACTTTTA
15170829 GCTAGACCTG
Statistics
Matches: 81, Mismatches: 2, Indels: 3
0.94 0.02 0.03
Matches are distributed among these distances:
99 10 0.12
100 36 0.44
102 35 0.43
ACGTcount: A:0.34, C:0.16, G:0.11, T:0.39
Consensus pattern (100 bp):
TTCTTTTCCCAAAACTTGTACAACTTTTACAAGGAAAAAATATTTTAAGTTTAAATCTAGGAAAT
ACGCTTGATGGTACTTTTACCCCATCAACTTTTTC
Found at i:15171011 original size:22 final size:22
Alignment explanation
Indices: 15170978--15171038 Score: 86
Period size: 22 Copynumber: 2.7 Consensus size: 22
15170968 GCCCGGCCCG
* *
15170978 TTTTTAATTAAAATTAAAATTAT
1 TTTTTAA-TAAAATTAAAACTAA
15171001 TTTTTAATAAAATTAAAACTAA
1 TTTTTAATAAAATTAAAACTAA
*
15171023 TTGTTAATAAAATTAA
1 TTTTTAATAAAATTAA
15171039 TTGTTAGTAA
Statistics
Matches: 35, Mismatches: 3, Indels: 1
0.90 0.08 0.03
Matches are distributed among these distances:
22 28 0.80
23 7 0.20
ACGTcount: A:0.51, C:0.02, G:0.02, T:0.46
Consensus pattern (22 bp):
TTTTTAATAAAATTAAAACTAA
Found at i:15171051 original size:16 final size:16
Alignment explanation
Indices: 15171014--15171053 Score: 62
Period size: 16 Copynumber: 2.5 Consensus size: 16
15171004 TTAATAAAAT
*
15171014 TAAAACTAATTGTTAA
1 TAAAATTAATTGTTAA
*
15171030 TAAAATTAATTGTTAG
1 TAAAATTAATTGTTAA
15171046 TAAAATTA
1 TAAAATTA
15171054 TCAAATTATT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.50, C:0.03, G:0.07, T:0.40
Consensus pattern (16 bp):
TAAAATTAATTGTTAA
Found at i:15171138 original size:9 final size:9
Alignment explanation
Indices: 15171126--15171151 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
15171116 TTTATCAAAT
15171126 TATTAATTG
1 TATTAATTG
15171135 TATTAATTG
1 TATTAATTG
15171144 TATTAATT
1 TATTAATT
15171152 ATTGTAATAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.35, C:0.00, G:0.08, T:0.58
Consensus pattern (9 bp):
TATTAATTG
Found at i:15171164 original size:68 final size:68
Alignment explanation
Indices: 15171042--15171251 Score: 379
Period size: 68 Copynumber: 3.1 Consensus size: 68
15171032 AAATTAATTG
*
15171042 TTAGTAAAATTATCAAATTATTAATTG--TTAATTGTATTAATTGTTGTAATAAAATCTAACATT
1 TTAGTAAATTTATCAAATTATTAATTGTATTAATTGTATTAATTGTTGTAATAAAATCTAACATT
15171105 TGA
66 TGA
*
15171108 TTAGTAAATTTATCAAATTATTAATTGTATTAATTGTATTAATTATTGTAATAAAATCTAACATT
1 TTAGTAAATTTATCAAATTATTAATTGTATTAATTGTATTAATTGTTGTAATAAAATCTAACATT
15171173 TGA
66 TGA
*
15171176 TTAGTAAATTTATCAAATTATTAATTGTATTAATTGTATTAATTGTTGTAACAAAATCTAACATT
1 TTAGTAAATTTATCAAATTATTAATTGTATTAATTGTATTAATTGTTGTAATAAAATCTAACATT
15171241 TGA
66 TGA
15171244 TTAGTAAA
1 TTAGTAAA
15171252 ACAAACTTGA
Statistics
Matches: 138, Mismatches: 4, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
66 26 0.19
68 112 0.81
ACGTcount: A:0.41, C:0.05, G:0.09, T:0.46
Consensus pattern (68 bp):
TTAGTAAATTTATCAAATTATTAATTGTATTAATTGTATTAATTGTTGTAATAAAATCTAACATT
TGA
Found at i:15171206 original size:9 final size:9
Alignment explanation
Indices: 15171194--15171221 Score: 56
Period size: 9 Copynumber: 3.1 Consensus size: 9
15171184 TTTATCAAAT
15171194 TATTAATTG
1 TATTAATTG
15171203 TATTAATTG
1 TATTAATTG
15171212 TATTAATTG
1 TATTAATTG
15171221 T
1 T
15171222 TGTAACAAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.32, C:0.00, G:0.11, T:0.57
Consensus pattern (9 bp):
TATTAATTG
Found at i:15171930 original size:14 final size:15
Alignment explanation
Indices: 15171911--15171942 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
15171901 TTTGCAATAA
15171911 AAATTTT-AAAACTT
1 AAATTTTGAAAACTT
15171925 AAATTTTGAAAACTT
1 AAATTTTGAAAACTT
15171940 AAA
1 AAA
15171943 AATTTGGAGA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 7 0.41
15 10 0.59
ACGTcount: A:0.53, C:0.06, G:0.03, T:0.38
Consensus pattern (15 bp):
AAATTTTGAAAACTT
Found at i:15178233 original size:24 final size:24
Alignment explanation
Indices: 15178206--15178268 Score: 108
Period size: 24 Copynumber: 2.6 Consensus size: 24
15178196 CTTGGATTTC
*
15178206 TCTTCCCTGTTCATCTAAAATAAT
1 TCTTCCTTGTTCATCTAAAATAAT
15178230 TCTTCCTTGTTCATCTAAAATAAT
1 TCTTCCTTGTTCATCTAAAATAAT
*
15178254 TCTTCCTTGGTCATC
1 TCTTCCTTGTTCATC
15178269 CTTTTCTATT
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
24 37 1.00
ACGTcount: A:0.24, C:0.25, G:0.06, T:0.44
Consensus pattern (24 bp):
TCTTCCTTGTTCATCTAAAATAAT
Found at i:15188243 original size:22 final size:22
Alignment explanation
Indices: 15188215--15188260 Score: 92
Period size: 22 Copynumber: 2.1 Consensus size: 22
15188205 GAACTACGGA
15188215 AGACAGCGAGGTAGTCGTAATT
1 AGACAGCGAGGTAGTCGTAATT
15188237 AGACAGCGAGGTAGTCGTAATT
1 AGACAGCGAGGTAGTCGTAATT
15188259 AG
1 AG
15188261 TCGTAATATT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.33, C:0.13, G:0.33, T:0.22
Consensus pattern (22 bp):
AGACAGCGAGGTAGTCGTAATT
Found at i:15192314 original size:22 final size:22
Alignment explanation
Indices: 15192286--15192330 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
15192276 AACACAACTG
15192286 GTGCTCAACGACCTAATGTTGA
1 GTGCTCAACGACCTAATGTTGA
15192308 GTGCTCAACGACCTAATGTTGA
1 GTGCTCAACGACCTAATGTTGA
15192330 G
1 G
15192331 CGAGATAATA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.27, C:0.22, G:0.24, T:0.27
Consensus pattern (22 bp):
GTGCTCAACGACCTAATGTTGA
Found at i:15193868 original size:33 final size:33
Alignment explanation
Indices: 15193831--15194068 Score: 146
Period size: 33 Copynumber: 6.8 Consensus size: 33
15193821 TCCCCCAAGG
15193831 GGTTGCTAAGTGCTGATTCCCCGATTCATTGGT
1 GGTTGCTAAGTGCTGATTCCCCGATTCATTGGT
* *
15193864 GGTTGCTAAGTGCTGATTCCACCGTATCTTTAAATATAAAGGG
1 GGTTGCTAAGTGCTGATTCC-CCG-A---TT-CAT-T---GGT
*
15193907 GGTTGCTAAGTGCTGATTCCCC----CA-AGG-
1 GGTTGCTAAGTGCTGATTCCCCGATTCATTGGT
* *
15193934 GGTTGCTAAGTGCTGATTCCCCGAATGATTGGT
1 GGTTGCTAAGTGCTGATTCCCCGATTCATTGGT
* *
15193967 GGTTGCTAAGTGCTGATTCCACGATATCTTTGAATGTGAAAGG
1 GGTTGCTAAGTGCTGATTCCCCGAT-TC-----AT-TG---GT
* *
15194010 GGTTGCTAAGTGCTGATTCCCCGAATCACTGGT
1 GGTTGCTAAGTGCTGATTCCCCGATTCATTGGT
* *
15194043 GGTTGCTAAGTGTTGAATCCACCGAT
1 GGTTGCTAAGTGCTGATTCC-CCGAT
15194069 AACGGTTAAC
Statistics
Matches: 161, Mismatches: 17, Indels: 53
0.70 0.07 0.23
Matches are distributed among these distances:
27 22 0.14
28 2 0.01
31 1 0.01
32 2 0.01
33 63 0.39
34 8 0.05
35 1 0.01
36 2 0.01
37 1 0.01
38 2 0.01
39 4 0.02
40 3 0.02
42 4 0.02
43 46 0.29
ACGTcount: A:0.21, C:0.19, G:0.27, T:0.32
Consensus pattern (33 bp):
GGTTGCTAAGTGCTGATTCCCCGATTCATTGGT
Found at i:15193903 original size:103 final size:103
Alignment explanation
Indices: 15193724--15194031 Score: 512
Period size: 103 Copynumber: 3.0 Consensus size: 103
15193714 ATTGAATATG
* * *
15193724 AAGGGGTTGCTAAGTGTTGATTCCCCGACTCATTAGTGGTTGCTAAGTGCTGATTCCACCGTATC
1 AAGGGGTTGCTAAGTGCTGATTCCCCGAATCATTGGTGGTTGCTAAGTGCTGATTCCACCGTATC
*
15193789 TTTAAATATAAAGGGGGTTGCTAAATGCTGATTCCCCC
66 TTTAAATATAAAGGGGGTTGCTAAGTGCTGATTCCCCC
*
15193827 AAGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTTGCTAAGTGCTGATTCCACCGTATC
1 AAGGGGTTGCTAAGTGCTGATTCCCCGAATCATTGGTGGTTGCTAAGTGCTGATTCCACCGTATC
15193892 TTTAAATATAAAGGGGGTTGCTAAGTGCTGATTCCCCC
66 TTTAAATATAAAGGGGGTTGCTAAGTGCTGATTCCCCC
*
15193930 AAGGGGTTGCTAAGTGCTGATTCCCCGAATGATTGGTGGTTGCTAAGTGCTGATTCCA-CGATAT
1 AAGGGGTTGCTAAGTGCTGATTCCCCGAATCATTGGTGGTTGCTAAGTGCTGATTCCACCG-TAT
* *
15193994 CTTTGAATGTGAAA-GGGGTTGCTAAGTGCTGATTCCCC
65 CTTTAAATAT-AAAGGGGGTTGCTAAGTGCTGATTCCCC
15194032 GAATCACTGG
Statistics
Matches: 195, Mismatches: 8, Indels: 4
0.94 0.04 0.02
Matches are distributed among these distances:
102 2 0.01
103 190 0.97
104 3 0.02
ACGTcount: A:0.22, C:0.19, G:0.27, T:0.32
Consensus pattern (103 bp):
AAGGGGTTGCTAAGTGCTGATTCCCCGAATCATTGGTGGTTGCTAAGTGCTGATTCCACCGTATC
TTTAAATATAAAGGGGGTTGCTAAGTGCTGATTCCCCC
Found at i:15197443 original size:27 final size:27
Alignment explanation
Indices: 15197413--15197602 Score: 107
Period size: 27 Copynumber: 7.0 Consensus size: 27
15197403 TTTCATCTCT
15197413 TAGGGGTATAATAG-TCATTTTACCCTA
1 TAGGGGTAT-ATAGATCATTTTACCCTA
* * *
15197440 TAGGGGTATTTCGATCATTTTACTCTA
1 TAGGGGTATATAGATCATTTTACCCTA
* * * * *
15197467 TGGGGGTATTTCGATCATTCTACTCTA
1 TAGGGGTATATAGATCATTTTACCCTA
* * * * * *
15197494 TGGGGGTATTTCGGTTATTTCACCCTA
1 TAGGGGTATATAGATCATTTTACCCTA
* * *
15197521 TGGGGGTATTTCA-ATTATTTTACCCTA
1 TAGGGGTATAT-AGATCATTTTACCCTA
* * * *
15197548 T-GAGGGTATTTCGGTTATTTTACCCTA
1 TAG-GGGTATATAGATCATTTTACCCTA
* * * *
15197575 TAGGGGTATTTCGGTCATTTTATCCTA
1 TAGGGGTATATAGATCATTTTACCCTA
15197602 T
1 T
15197603 TTTGGGGCCT
Statistics
Matches: 141, Mismatches: 17, Indels: 10
0.84 0.10 0.06
Matches are distributed among these distances:
26 3 0.02
27 137 0.97
28 1 0.01
ACGTcount: A:0.21, C:0.16, G:0.21, T:0.43
Consensus pattern (27 bp):
TAGGGGTATATAGATCATTTTACCCTA
Found at i:15197485 original size:54 final size:53
Alignment explanation
Indices: 15197427--15197602 Score: 226
Period size: 54 Copynumber: 3.3 Consensus size: 53
15197417 GGTATAATAG
* * *
15197427 TCATTTTACCCTATAGGGGTATTTCGATCATTTTACTCTATGGGGGTATTTCGA
1 TCATTTTACCCTAT-GGGGTATTTCGGTTATTTTACCCTATGGGGGTATTTCGA
* * * *
15197481 TCATTCTACTCTATGGGGGTATTTCGGTTATTTCACCCTATGGGGGTATTTCAA
1 TCATTTTACCCTAT-GGGGTATTTCGGTTATTTTACCCTATGGGGGTATTTCGA
* * *
15197535 TTATTTTACCCTATGAGGGTATTTCGGTTATTTTACCCTATAGGGGTATTTCGG
1 TCATTTTACCCTATG-GGGTATTTCGGTTATTTTACCCTATGGGGGTATTTCGA
*
15197589 TCATTTTATCCTAT
1 TCATTTTACCCTAT
15197603 TTTGGGGCCT
Statistics
Matches: 104, Mismatches: 17, Indels: 2
0.85 0.14 0.02
Matches are distributed among these distances:
53 1 0.01
54 103 0.99
ACGTcount: A:0.19, C:0.17, G:0.20, T:0.44
Consensus pattern (53 bp):
TCATTTTACCCTATGGGGTATTTCGGTTATTTTACCCTATGGGGGTATTTCGA
Found at i:15197602 original size:81 final size:81
Alignment explanation
Indices: 15197426--15197602 Score: 237
Period size: 81 Copynumber: 2.2 Consensus size: 81
15197416 GGGTATAATA
* * * *
15197426 GTCATTTTACCCTATAGGGGTATTTCGATCATTTTACTCTATGGGGGTATTTCGATCATTCTACT
1 GTCATTTTACCCTATAGGGGTATTTCAATCATTTTACCCTATGAGGGTATTTCGATCATTCTACC
*
15197491 CTATGGGGGTATTTCG
66 CTATAGGGGTATTTCG
* * * * * * *
15197507 GTTATTTCACCCTATGGGGGTATTTCAATTATTTTACCCTATGAGGGTATTTCGGTTATTTTACC
1 GTCATTTTACCCTATAGGGGTATTTCAATCATTTTACCCTATGAGGGTATTTCGATCATTCTACC
15197572 CTATAGGGGTATTTCG
66 CTATAGGGGTATTTCG
*
15197588 GTCATTTTATCCTAT
1 GTCATTTTACCCTAT
15197603 TTTGGGGCCT
Statistics
Matches: 81, Mismatches: 15, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
81 81 1.00
ACGTcount: A:0.19, C:0.17, G:0.20, T:0.44
Consensus pattern (81 bp):
GTCATTTTACCCTATAGGGGTATTTCAATCATTTTACCCTATGAGGGTATTTCGATCATTCTACC
CTATAGGGGTATTTCG
Found at i:15202814 original size:3 final size:3
Alignment explanation
Indices: 15202766--15202798 Score: 66
Period size: 3 Copynumber: 11.0 Consensus size: 3
15202756 ATTATAAAGT
15202766 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
15202799 AAGAAACATA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:15202875 original size:14 final size:16
Alignment explanation
Indices: 15202858--15202892 Score: 56
Period size: 16 Copynumber: 2.3 Consensus size: 16
15202848 ATGCAAAATG
15202858 AGAAAG-AAA-AAAAA
1 AGAAAGAAAAGAAAAA
15202872 AGAAAGAAAAGAAAAA
1 AGAAAGAAAAGAAAAA
15202888 AGAAA
1 AGAAA
15202893 AGAAGAAGAG
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 6 0.32
15 3 0.16
16 10 0.53
ACGTcount: A:0.83, C:0.00, G:0.17, T:0.00
Consensus pattern (16 bp):
AGAAAGAAAAGAAAAA
Found at i:15204032 original size:18 final size:18
Alignment explanation
Indices: 15204009--15204101 Score: 80
Period size: 18 Copynumber: 4.7 Consensus size: 18
15203999 GAAATGGCCA
15204009 AGATGAGAAATGAATATG
1 AGATGAGAAATGAATATG
15204027 AGATGAGAAATGTTGAAT-TGG
1 AGATGAGAAA---TGAATAT-G
15204048 CAAAGATGAGAAATGAATATG
1 ---AGATGAGAAATGAATATG
*
15204069 AGATGAGAAATGTGATATG
1 AGATGAGAAATG-AATATG
*
15204088 AAATGATGAAATGA
1 AGATGA-GAAATGA
15204102 GATGTGAAAC
Statistics
Matches: 62, Mismatches: 3, Indels: 19
0.74 0.04 0.23
Matches are distributed among these distances:
18 22 0.35
19 10 0.16
20 7 0.11
21 12 0.19
22 1 0.02
24 10 0.16
ACGTcount: A:0.47, C:0.01, G:0.28, T:0.24
Consensus pattern (18 bp):
AGATGAGAAATGAATATG
Found at i:15204056 original size:42 final size:42
Alignment explanation
Indices: 15203997--15204081 Score: 152
Period size: 42 Copynumber: 2.0 Consensus size: 42
15203987 GTGATTGATA
*
15203997 TTGAAATGGCCAAGATGAGAAATGAATATGAGATGAGAAATG
1 TTGAAATGGCAAAGATGAGAAATGAATATGAGATGAGAAATG
*
15204039 TTGAATTGGCAAAGATGAGAAATGAATATGAGATGAGAAATG
1 TTGAAATGGCAAAGATGAGAAATGAATATGAGATGAGAAATG
15204081 T
1 T
15204082 GATATGAAAT
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
42 41 1.00
ACGTcount: A:0.45, C:0.04, G:0.28, T:0.24
Consensus pattern (42 bp):
TTGAAATGGCAAAGATGAGAAATGAATATGAGATGAGAAATG
Found at i:15204064 original size:21 final size:20
Alignment explanation
Indices: 15204007--15204065 Score: 52
Period size: 21 Copynumber: 2.9 Consensus size: 20
15203997 TTGAAATGGC
15204007 CAAGATGAGAAATGAATAT-G
1 CAAGATGAGAAATGAAT-TGG
15204027 --AGATGAGAAATGTTGAATTGG
1 CAAGATGAGAAA---TGAATTGG
15204048 CAAAGATGAGAAATGAAT
1 C-AAGATGAGAAATGAAT
15204066 ATGAGATGAG
Statistics
Matches: 32, Mismatches: 0, Indels: 13
0.71 0.00 0.29
Matches are distributed among these distances:
18 10 0.31
20 1 0.03
21 11 0.34
24 10 0.31
ACGTcount: A:0.47, C:0.03, G:0.27, T:0.22
Consensus pattern (20 bp):
CAAGATGAGAAATGAATTGG
Found at i:15204121 original size:32 final size:33
Alignment explanation
Indices: 15204060--15204121 Score: 83
Period size: 32 Copynumber: 1.9 Consensus size: 33
15204050 AAGATGAGAA
*
15204060 ATGAATATGAGATGAGAAATGTGATATGAAATG
1 ATGAATATGAGATGAGAAATGTGAAATGAAATG
*
15204093 ATGAA-ATGAGATGTGAAACT-TGAAATGAA
1 ATGAATATGAGATGAGAAA-TGTGAAATGAA
15204122 TTCAAGTATT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
32 20 0.77
33 6 0.23
ACGTcount: A:0.47, C:0.02, G:0.26, T:0.26
Consensus pattern (33 bp):
ATGAATATGAGATGAGAAATGTGAAATGAAATG
Found at i:15206143 original size:2 final size:2
Alignment explanation
Indices: 15206136--15206188 Score: 106
Period size: 2 Copynumber: 26.5 Consensus size: 2
15206126 TAAGCATAAG
15206136 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
15206178 AT AT AT AT AT A
1 AT AT AT AT AT A
15206189 AACAATTAAA
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 51 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:15206912 original size:16 final size:17
Alignment explanation
Indices: 15206871--15206912 Score: 50
Period size: 16 Copynumber: 2.5 Consensus size: 17
15206861 TCTGAAAATA
15206871 TTTTAATATATTTTAA-
1 TTTTAATATATTTTAAT
* *
15206887 TTATAAAATATTTTTAAT
1 TTTTAATATA-TTTTAAT
15206905 TTTTAATA
1 TTTTAATA
15206913 AATAATTTAA
Statistics
Matches: 20, Mismatches: 4, Indels: 2
0.77 0.15 0.08
Matches are distributed among these distances:
16 8 0.40
17 6 0.30
18 6 0.30
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (17 bp):
TTTTAATATATTTTAAT
Found at i:15208164 original size:2 final size:2
Alignment explanation
Indices: 15208157--15208197 Score: 75
Period size: 2 Copynumber: 21.0 Consensus size: 2
15208147 ATTAATTTGC
15208157 TA TA TA TA TA TA TA TA TA TA TA TA TA T- TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
15208198 CCGAAAAGTC
Statistics
Matches: 38, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
1 1 0.03
2 37 0.97
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:15208496 original size:24 final size:24
Alignment explanation
Indices: 15208469--15208607 Score: 95
Period size: 24 Copynumber: 5.7 Consensus size: 24
15208459 TCGTAATTGA
* *
15208469 GAAGCTCATGCGAGCCAATATCGG
1 GAAGCTCATGAGAGCCAATATCAG
*
15208493 GAAGCTC-TGGAGAG-CATTAATCAG
1 GAAGCTCAT-GAGAGCCAAT-ATCAG
* * *
15208517 GAAGCTCATAAGAGCTAGTTATCAG
1 GAAGCTCATGAGAGCCA-ATATCAG
* *
15208542 GAAGCTCGTGAGAGCCAATATCGG
1 GAAGCTCATGAGAGCCAATATCAG
* * * *
15208566 GAAGCTC-CGAAAAGCCATTAATCTG
1 GAAGCTCATG-AGAGCCAAT-ATCAG
*
15208591 GAAGCTCGTGAGAGCCA
1 GAAGCTCATGAGAGCCA
15208608 TATAACGAGA
Statistics
Matches: 91, Mismatches: 16, Indels: 15
0.75 0.13 0.12
Matches are distributed among these distances:
23 5 0.05
24 45 0.49
25 38 0.42
26 3 0.03
ACGTcount: A:0.32, C:0.21, G:0.28, T:0.19
Consensus pattern (24 bp):
GAAGCTCATGAGAGCCAATATCAG
Found at i:15208555 original size:49 final size:48
Alignment explanation
Indices: 15208469--15208632 Score: 129
Period size: 49 Copynumber: 3.4 Consensus size: 48
15208459 TCGTAATTGA
** * * *
15208469 GAAGCTCATGCGAGCCAATATCGGGAAGCTC-TGGAGAG-CATTAATCAG
1 GAAGCTCATAAGAGCTATTATCAGGAAGCTCGT-GAGAGCCATTAATC-G
*
15208517 GAAGCTCATAAGAGCTAGTTATCAGGAAGCTCGTGAGAGCCAAT-ATCGG
1 GAAGCTCATAAGAGCTA-TTATCAGGAAGCTCGTGAGAGCCATTAATC-G
** * * *
15208566 GAAGCTCCGAAAAGCCATTAATCTGGAAGCTCGTGAGAGCCATATAA-CG
1 GAAGCTCATAAGAGCTATT-ATCAGGAAGCTCGTGAGAGCCAT-TAATCG
*
15208615 AGATGCTCATAAGAGCTA
1 -GAAGCTCATAAGAGCTA
15208633 AATAGCGGGA
Statistics
Matches: 91, Mismatches: 18, Indels: 12
0.75 0.15 0.10
Matches are distributed among these distances:
48 16 0.18
49 56 0.62
50 18 0.20
51 1 0.01
ACGTcount: A:0.34, C:0.20, G:0.27, T:0.20
Consensus pattern (48 bp):
GAAGCTCATAAGAGCTATTATCAGGAAGCTCGTGAGAGCCATTAATCG
Found at i:15209002 original size:21 final size:21
Alignment explanation
Indices: 15208978--15209019 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
15208968 TGAATTTAGC
* *
15208978 TCAATTTAATACAATTCACAT
1 TCAATTCAATACAATACACAT
*
15208999 TCAATTCAATCCAATACACAT
1 TCAATTCAATACAATACACAT
15209020 CTTTGGAAAA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.43, C:0.24, G:0.00, T:0.33
Consensus pattern (21 bp):
TCAATTCAATACAATACACAT
Found at i:15213335 original size:21 final size:21
Alignment explanation
Indices: 15213289--15213336 Score: 55
Period size: 21 Copynumber: 2.3 Consensus size: 21
15213279 GCGTAAATAT
* *
15213289 TAAA-AATTAAATTATTATAA
1 TAAATAATCAAATTAATATAA
15213309 -ATAATAATCAAATTAATATAA
1 TA-AATAATCAAATTAATATAA
15213330 TAAATAA
1 TAAATAA
15213337 ACATTGAGTC
Statistics
Matches: 23, Mismatches: 2, Indels: 5
0.77 0.07 0.17
Matches are distributed among these distances:
19 1 0.04
20 2 0.09
21 19 0.83
22 1 0.04
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.35
Consensus pattern (21 bp):
TAAATAATCAAATTAATATAA
Found at i:15216371 original size:33 final size:33
Alignment explanation
Indices: 15216329--15216393 Score: 121
Period size: 33 Copynumber: 2.0 Consensus size: 33
15216319 ACAGATCATG
15216329 GAGATGCTCTTAAGAGTTTCATAGAAGGATATA
1 GAGATGCTCTTAAGAGTTTCATAGAAGGATATA
*
15216362 GAGATGCTCTTAAGAGTTTCATGGAAGGATAT
1 GAGATGCTCTTAAGAGTTTCATAGAAGGATAT
15216394 CAAGAAGGTA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 31 1.00
ACGTcount: A:0.34, C:0.09, G:0.26, T:0.31
Consensus pattern (33 bp):
GAGATGCTCTTAAGAGTTTCATAGAAGGATATA
Found at i:15217502 original size:24 final size:24
Alignment explanation
Indices: 15217470--15217520 Score: 68
Period size: 24 Copynumber: 2.1 Consensus size: 24
15217460 TCTTAATAAT
15217470 AATATTATACTAA-AATTATTATTA
1 AATATTATACTAAGAA-TATTATTA
* *
15217494 AATATTATATTAAGAATGTTATTA
1 AATATTATACTAAGAATATTATTA
15217518 AAT
1 AAT
15217521 TATATATTAT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
24 22 0.92
25 2 0.08
ACGTcount: A:0.49, C:0.02, G:0.04, T:0.45
Consensus pattern (24 bp):
AATATTATACTAAGAATATTATTA
Found at i:15217626 original size:60 final size:57
Alignment explanation
Indices: 15217516--15217627 Score: 136
Period size: 60 Copynumber: 1.9 Consensus size: 57
15217506 AGAATGTTAT
* **
15217516 TAAATTATATATTATTTTATTAAATTGTACTTAATAATAATTATGTTAAAATATGAC
1 TAAATTATATATTATTTTATTAAATTATACTTAATAATAATTATACTAAAATATGAC
* *
15217573 TAAATTATTTATTATTTATTTATTAAATTATATTTAATAATAATCT-TACTAAAAT
1 TAAATTATATATTA--T-TTTATTAAATTATACTTAATAATAAT-TATACTAAAAT
15217628 TTAATAATAA
Statistics
Matches: 46, Mismatches: 5, Indels: 5
0.82 0.09 0.09
Matches are distributed among these distances:
57 13 0.28
59 1 0.02
60 31 0.67
61 1 0.02
ACGTcount: A:0.44, C:0.04, G:0.03, T:0.50
Consensus pattern (57 bp):
TAAATTATATATTATTTTATTAAATTATACTTAATAATAATTATACTAAAATATGAC
Found at i:15217818 original size:16 final size:16
Alignment explanation
Indices: 15217797--15217831 Score: 61
Period size: 16 Copynumber: 2.2 Consensus size: 16
15217787 TGAAATGCTG
15217797 ATTACAACCCTATTCC
1 ATTACAACCCTATTCC
*
15217813 ATTACAACTCTATTCC
1 ATTACAACCCTATTCC
15217829 ATT
1 ATT
15217832 CACTCCAACC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.31, C:0.31, G:0.00, T:0.37
Consensus pattern (16 bp):
ATTACAACCCTATTCC
Found at i:15218541 original size:22 final size:22
Alignment explanation
Indices: 15218515--15218562 Score: 62
Period size: 22 Copynumber: 2.2 Consensus size: 22
15218505 CTCCCCGTAT
*
15218515 TTTATTATAA-ATATTTTAATTA
1 TTTA-TATAATATATTTAAATTA
*
15218537 TTTATATAATCTATTTAAATTA
1 TTTATATAATATATTTAAATTA
15218559 TTTA
1 TTTA
15218563 CTAGATAAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
21 5 0.22
22 18 0.78
ACGTcount: A:0.40, C:0.02, G:0.00, T:0.58
Consensus pattern (22 bp):
TTTATATAATATATTTAAATTA
Found at i:15219920 original size:10 final size:10
Alignment explanation
Indices: 15219893--15219925 Score: 50
Period size: 10 Copynumber: 3.4 Consensus size: 10
15219883 AACTAGTAGA
15219893 AATGAATTGG
1 AATGAATTGG
15219903 AATG-ATTGG
1 AATGAATTGG
*
15219912 AATGAATTGA
1 AATGAATTGG
15219922 AATG
1 AATG
15219926 GTTGATTATT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
9 9 0.43
10 12 0.57
ACGTcount: A:0.42, C:0.00, G:0.27, T:0.30
Consensus pattern (10 bp):
AATGAATTGG
Found at i:15222986 original size:24 final size:25
Alignment explanation
Indices: 15222934--15222980 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
15222924 TAGTTCCTAT
* *
15222934 GAGCTTCCCGTTATATGGTTCTTGC
1 GAGCTTCCCGTTATATAGCTCTTGC
15222959 GAGCTTCCCGTTA-ATAGCTCTT
1 GAGCTTCCCGTTATATAGCTCTT
15222981 CGGAGCATCT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
24 7 0.35
25 13 0.65
ACGTcount: A:0.15, C:0.26, G:0.21, T:0.38
Consensus pattern (25 bp):
GAGCTTCCCGTTATATAGCTCTTGC
Found at i:15223083 original size:25 final size:27
Alignment explanation
Indices: 15223055--15223105 Score: 70
Period size: 27 Copynumber: 2.0 Consensus size: 27
15223045 CTTGATATAT
*
15223055 GGCTC-TTC-GGAGCTTCCTGATTAAA
1 GGCTCTTTCAGGAGCTTCCCGATTAAA
*
15223080 GGCTCTTTCATGAGCTTCCCGATTAA
1 GGCTCTTTCAGGAGCTTCCCGATTAA
15223106 TGGATCTCCA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
25 5 0.23
26 3 0.14
27 14 0.64
ACGTcount: A:0.20, C:0.25, G:0.22, T:0.33
Consensus pattern (27 bp):
GGCTCTTTCAGGAGCTTCCCGATTAAA
Found at i:15223217 original size:25 final size:25
Alignment explanation
Indices: 15223144--15223221 Score: 81
Period size: 24 Copynumber: 3.2 Consensus size: 25
15223134 TTGCTTGAAC
* *
15223144 CTTCCCAATAC-TGGCTCATATGAG
1 CTTCCCATTACATGGCTCACATGAG
* * *
15223168 CTTCCCGTTA-ATGGTTCTC-TGGAG
1 CTTCCCATTACATGGCTCACAT-GAG
15223192 CTTCCCATTACATGGCTCACATGAG
1 CTTCCCATTACATGGCTCACATGAG
15223217 CTTCC
1 CTTCC
15223222 TGTTATAAGG
Statistics
Matches: 42, Mismatches: 8, Indels: 7
0.74 0.14 0.12
Matches are distributed among these distances:
23 1 0.02
24 25 0.60
25 15 0.36
26 1 0.02
ACGTcount: A:0.19, C:0.31, G:0.18, T:0.32
Consensus pattern (25 bp):
CTTCCCATTACATGGCTCACATGAG
Found at i:15226043 original size:27 final size:27
Alignment explanation
Indices: 15226005--15226057 Score: 70
Period size: 27 Copynumber: 2.0 Consensus size: 27
15225995 CATCATGTGT
* * *
15226005 ATTTGGCCCAAACCTTTGGCCAACATC
1 ATTTGACCCAAAACTTAGGCCAACATC
*
15226032 ATTTGACCCAAAACTTAGGCCTACAT
1 ATTTGACCCAAAACTTAGGCCAACAT
15226058 TATTAGGCCT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.30, C:0.30, G:0.13, T:0.26
Consensus pattern (27 bp):
ATTTGACCCAAAACTTAGGCCAACATC
Found at i:15226143 original size:45 final size:45
Alignment explanation
Indices: 15226073--15226161 Score: 142
Period size: 45 Copynumber: 2.0 Consensus size: 45
15226063 GGCCTAGTAA
* * * *
15226073 GGCCCACGTGAGGGTTTTGTGACCCAATACCCATATCAATATAAT
1 GGCCCACGTGAGGGTCTTATAACCCAATACCCATATCAACATAAT
15226118 GGCCCACGTGAGGGTCTTATAACCCAATACCCATATCAACATAA
1 GGCCCACGTGAGGGTCTTATAACCCAATACCCATATCAACATAA
15226162 GGGTTATATG
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
45 40 1.00
ACGTcount: A:0.31, C:0.27, G:0.18, T:0.24
Consensus pattern (45 bp):
GGCCCACGTGAGGGTCTTATAACCCAATACCCATATCAACATAAT
Found at i:15227393 original size:19 final size:19
Alignment explanation
Indices: 15227369--15227406 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
15227359 GTAACTAGTA
*
15227369 GAAATGAATTGGAATGATT
1 GAAATGAATTGAAATGATT
15227388 GAAATGAATTGAAATGATT
1 GAAATGAATTGAAATGATT
15227407 TACTATTGCT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.45, C:0.00, G:0.24, T:0.32
Consensus pattern (19 bp):
GAAATGAATTGAAATGATT
Found at i:15227398 original size:10 final size:10
Alignment explanation
Indices: 15227369--15227404 Score: 56
Period size: 10 Copynumber: 3.7 Consensus size: 10
15227359 GTAACTAGTA
15227369 GAAATGAATT
1 GAAATGAATT
*
15227379 GGAATG-ATT
1 GAAATGAATT
15227388 GAAATGAATT
1 GAAATGAATT
15227398 GAAATGA
1 GAAATGA
15227405 TTTACTATTG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
9 8 0.35
10 15 0.65
ACGTcount: A:0.47, C:0.00, G:0.25, T:0.28
Consensus pattern (10 bp):
GAAATGAATT
Found at i:15233037 original size:20 final size:20
Alignment explanation
Indices: 15233012--15233076 Score: 62
Period size: 20 Copynumber: 3.3 Consensus size: 20
15233002 AATGGAAAGG
*
15233012 AATCAAAGGATTGAGAATCA
1 AATCAAAGGATTGAGAATAA
* * *
15233032 AATCAATGTAATG-GAA-AGA
1 AATCAAAGGATTGAGAATA-A
*
15233051 AATCAAAAGATTGAGAATAA
1 AATCAAAGGATTGAGAATAA
15233071 AATCAA
1 AATCAA
15233077 TGTAAACAAG
Statistics
Matches: 34, Mismatches: 8, Indels: 6
0.71 0.17 0.12
Matches are distributed among these distances:
19 13 0.38
20 20 0.59
21 1 0.03
ACGTcount: A:0.55, C:0.08, G:0.17, T:0.20
Consensus pattern (20 bp):
AATCAAAGGATTGAGAATAA
Found at i:15233044 original size:39 final size:39
Alignment explanation
Indices: 15233001--15233081 Score: 135
Period size: 39 Copynumber: 2.1 Consensus size: 39
15232991 AGCAAAACAA
* * *
15233001 TAATGGAAAGGAATCAAAGGATTGAGAATCAAATCAATG
1 TAATGGAAAGAAATCAAAAGATTGAGAATAAAATCAATG
15233040 TAATGGAAAGAAATCAAAAGATTGAGAATAAAATCAATG
1 TAATGGAAAGAAATCAAAAGATTGAGAATAAAATCAATG
15233079 TAA
1 TAA
15233082 ACAAGATTTT
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
39 39 1.00
ACGTcount: A:0.53, C:0.06, G:0.20, T:0.21
Consensus pattern (39 bp):
TAATGGAAAGAAATCAAAAGATTGAGAATAAAATCAATG
Found at i:15233457 original size:9 final size:9
Alignment explanation
Indices: 15233446--15233479 Score: 52
Period size: 9 Copynumber: 3.9 Consensus size: 9
15233436 AGCCTTTTGG
15233446 TTTTTT-TT
1 TTTTTTCTT
*
15233454 GTTTTTCTT
1 TTTTTTCTT
15233463 TTTTTTCTT
1 TTTTTTCTT
15233472 TTTTTTCT
1 TTTTTTCT
15233480 ATGCTGCAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
8 5 0.22
9 18 0.78
ACGTcount: A:0.00, C:0.09, G:0.03, T:0.88
Consensus pattern (9 bp):
TTTTTTCTT
Found at i:15233952 original size:15 final size:17
Alignment explanation
Indices: 15233919--15233956 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 17
15233909 ATTATCGTTT
*
15233919 TATAATCTATATATGTA
1 TATAATCTATATATATA
15233936 TATAAT-TATTATATATA
1 TATAATCTA-TATATATA
15233953 TATA
1 TATA
15233957 TGTACATATT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
16 2 0.11
17 17 0.89
ACGTcount: A:0.45, C:0.03, G:0.03, T:0.50
Consensus pattern (17 bp):
TATAATCTATATATATA
Found at i:15233952 original size:21 final size:21
Alignment explanation
Indices: 15233926--15233970 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
15233916 TTTTATAATC
*
15233926 TATATATGTATATA-ATTATTA
1 TATATATATATATACA-TATTA
*
15233947 TATATATATATGTACATATTA
1 TATATATATATATACATATTA
15233968 TAT
1 TAT
15233971 TTTTTTCAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
21 20 0.95
22 1 0.05
ACGTcount: A:0.42, C:0.02, G:0.04, T:0.51
Consensus pattern (21 bp):
TATATATATATATACATATTA
Found at i:15234803 original size:98 final size:98
Alignment explanation
Indices: 15234689--15234885 Score: 358
Period size: 98 Copynumber: 2.0 Consensus size: 98
15234679 TTAAAAATCA
* *
15234689 TAAAGGAAATATTCCGAGTTTGGGATTTTAAAGGAATTGTGCCCTAACGTATTGGGTGTGATTTC
1 TAAAGGAAATATTCCGAGTTTGGGATTCTAAAGGAATCGTGCCCTAACGTATTGGGTGTGATTTC
15234754 TTAAATCTTGGATAAGCGGACGTTCTTTTAAAG
66 TTAAATCTTGGATAAGCGGACGTTCTTTTAAAG
15234787 TAAAGGAAATATTCCGAGTTTGGGATTCTAAAGGAATCGTGCCCTAACGTATTGGGTGTGATTTC
1 TAAAGGAAATATTCCGAGTTTGGGATTCTAAAGGAATCGTGCCCTAACGTATTGGGTGTGATTTC
* *
15234852 TTAAATCTTGGATAAGTGGATGTTCTTTTAAAG
66 TTAAATCTTGGATAAGCGGACGTTCTTTTAAAG
15234885 T
1 T
15234886 TTTATTGTAT
Statistics
Matches: 95, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
98 95 1.00
ACGTcount: A:0.28, C:0.11, G:0.24, T:0.36
Consensus pattern (98 bp):
TAAAGGAAATATTCCGAGTTTGGGATTCTAAAGGAATCGTGCCCTAACGTATTGGGTGTGATTTC
TTAAATCTTGGATAAGCGGACGTTCTTTTAAAG
Found at i:15236614 original size:11 final size:11
Alignment explanation
Indices: 15236600--15236686 Score: 71
Period size: 11 Copynumber: 8.4 Consensus size: 11
15236590 TAAATACTAA
15236600 AAAAATATTTT
1 AAAAATATTTT
*
15236611 -AAAA-A-TTA
1 AAAAATATTTT
15236619 AAAAAGTATTTT
1 AAAAA-TATTTT
*
15236631 AAAATTATTTT
1 AAAAATATTTT
15236642 AAAAATATTTT
1 AAAAATATTTT
*
15236653 --AAA-A-TTA
1 AAAAATATTTT
*
15236660 AAAAAGTATTTA
1 AAAAA-TATTTT
15236672 AAAAATATTTT
1 AAAAATATTTT
15236683 AAAA
1 AAAA
15236687 TTAAAAAATT
Statistics
Matches: 61, Mismatches: 6, Indels: 18
0.72 0.07 0.21
Matches are distributed among these distances:
7 2 0.03
8 3 0.05
9 11 0.18
10 4 0.07
11 27 0.44
12 14 0.23
ACGTcount: A:0.59, C:0.00, G:0.02, T:0.39
Consensus pattern (11 bp):
AAAAATATTTT
Found at i:15236676 original size:30 final size:30
Alignment explanation
Indices: 15236631--15236694 Score: 110
Period size: 30 Copynumber: 2.1 Consensus size: 30
15236621 AAAGTATTTT
* *
15236631 AAAATTATTTTAAAAATATTTTAAAATTAA
1 AAAAGTATTTAAAAAATATTTTAAAATTAA
15236661 AAAAGTATTTAAAAAATATTTTAAAATTAA
1 AAAAGTATTTAAAAAATATTTTAAAATTAA
15236691 AAAA
1 AAAA
15236695 TTAAAAAAGT
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.61, C:0.00, G:0.02, T:0.38
Consensus pattern (30 bp):
AAAAGTATTTAAAAAATATTTTAAAATTAA
Found at i:15236704 original size:38 final size:38
Alignment explanation
Indices: 15236611--15236740 Score: 197
Period size: 38 Copynumber: 3.3 Consensus size: 38
15236601 AAAATATTTT
* * *
15236611 AAAAATTAAAAAAGTATTTTAAAATTATTTTAAAAATATTT
1 AAAAATTAAAAAAGTATTTAAAAAATATTTT--AAA-ATTA
*
15236652 TAAAATTAAAAAAGTATTTAAAAAATATTTTAAAATTA
1 AAAAATTAAAAAAGTATTTAAAAAATATTTTAAAATTA
15236690 AAAAATTAAAAAAGTATTTAAAAAATATTTTAAAATTA
1 AAAAATTAAAAAAGTATTTAAAAAATATTTTAAAATTA
15236728 AAAAATTAAAAAA
1 AAAAATTAAAAAA
15236741 TAAATAAGTG
Statistics
Matches: 84, Mismatches: 5, Indels: 3
0.91 0.05 0.03
Matches are distributed among these distances:
38 53 0.63
39 3 0.04
41 28 0.33
ACGTcount: A:0.62, C:0.00, G:0.02, T:0.35
Consensus pattern (38 bp):
AAAAATTAAAAAAGTATTTAAAAAATATTTTAAAATTA
Found at i:15236718 original size:11 final size:11
Alignment explanation
Indices: 15236585--15236724 Score: 69
Period size: 11 Copynumber: 12.6 Consensus size: 11
15236575 CCGGCCCATT
*
15236585 TTTAATAAATA
1 TTTAAAAAATA
* *
15236596 CTAAAAAAATA
1 TTTAAAAAATA
*
15236607 TTT-TAAAA-A
1 TTTAAAAAATA
15236616 -TTAAAAAAGTA
1 TTTAAAAAA-TA
* *
15236627 TTTTAAAATTA
1 TTTAAAAAATA
*
15236638 TTTTAAAAATA
1 TTTAAAAAATA
*
15236649 TTT--TAAA-A
1 TTTAAAAAATA
15236657 -TTAAAAAAGTA
1 TTTAAAAAA-TA
15236668 TTTAAAAAATA
1 TTTAAAAAATA
*
15236679 TTTTAAAATTAAAAA
1 -TTT-AAA--AAATA
*
15236694 ATTAAAAAAGTA
1 TTTAAAAAA-TA
15236706 TTTAAAAAATA
1 TTTAAAAAATA
15236717 TTTTAAAA
1 -TTTAAAA
15236725 TTAAAAAATT
Statistics
Matches: 98, Mismatches: 16, Indels: 29
0.69 0.11 0.20
Matches are distributed among these distances:
7 2 0.02
8 3 0.03
9 11 0.11
10 4 0.04
11 33 0.34
12 33 0.34
13 6 0.06
14 2 0.02
15 4 0.04
ACGTcount: A:0.59, C:0.01, G:0.02, T:0.38
Consensus pattern (11 bp):
TTTAAAAAATA
Found at i:15238609 original size:6 final size:6
Alignment explanation
Indices: 15238598--15238628 Score: 62
Period size: 6 Copynumber: 5.2 Consensus size: 6
15238588 GTTTTTGAGC
15238598 AAGAAA AAGAAA AAGAAA AAGAAA AAGAAA A
1 AAGAAA AAGAAA AAGAAA AAGAAA AAGAAA A
15238629 CATAGATAGA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 25 1.00
ACGTcount: A:0.84, C:0.00, G:0.16, T:0.00
Consensus pattern (6 bp):
AAGAAA
Found at i:15245117 original size:59 final size:58
Alignment explanation
Indices: 15245013--15245189 Score: 219
Period size: 59 Copynumber: 2.9 Consensus size: 58
15245003 TTTTTTAAAT
* *
15245013 ATTATATATTATGAATTTTATTAAATTATATTTTAATAATAATTATATTAAGAATGTTATTAA
1 ATTATATATTAT---TTTTATTAAATTATA-TTTAATAATAATTATATTAA-AATATAATTAA
* *
15245076 ATTATATATTATTTTTCTTAAATTATATTTAATAATAATTATGTTAAAATATAATTAA
1 ATTATATATTATTTTTATTAAATTATATTTAATAATAATTATATTAAAATATAATTAA
* * ** *
15245134 ATTATTTATTATTTTTTATTAAATTATATTTAACAATAATCCTATTAAAATTTAAT
1 ATTATATATTA-TTTTTATTAAATTATATTTAATAATAATTATATTAAAATATAAT
15245190 AACAATAACA
Statistics
Matches: 102, Mismatches: 11, Indels: 6
0.86 0.09 0.05
Matches are distributed among these distances:
58 19 0.19
59 57 0.56
60 14 0.14
63 12 0.12
ACGTcount: A:0.44, C:0.02, G:0.02, T:0.52
Consensus pattern (58 bp):
ATTATATATTATTTTTATTAAATTATATTTAATAATAATTATATTAAAATATAATTAA
Found at i:15246998 original size:2 final size:2
Alignment explanation
Indices: 15246991--15247032 Score: 84
Period size: 2 Copynumber: 21.0 Consensus size: 2
15246981 TAGTTTAAAC
15246991 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
15247033 GTTCACATTA
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 40 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:15251979 original size:23 final size:21
Alignment explanation
Indices: 15251938--15252011 Score: 62
Period size: 19 Copynumber: 3.5 Consensus size: 21
15251928 GTGATCTTCA
*
15251938 ATGATATGTAATCCT--AGAT
1 ATGATATGTAATCTTAGAGAT
15251957 ATGATATGTAATCTTTAGAAGAT
1 ATGATATGTAATC-TTAG-AGAT
* *
15251980 ACGATTCTGTAATCTTAGAGAT
1 ATGA-TATGTAATCTTAGAGAT
* *
15252002 TTGATTTGTA
1 ATGATATGTA
15252012 GATAGCTTTT
Statistics
Matches: 44, Mismatches: 6, Indels: 8
0.76 0.10 0.14
Matches are distributed among these distances:
19 13 0.30
20 1 0.02
21 5 0.11
22 6 0.14
23 11 0.25
24 8 0.18
ACGTcount: A:0.34, C:0.08, G:0.18, T:0.41
Consensus pattern (21 bp):
ATGATATGTAATCTTAGAGAT
Found at i:15252007 original size:22 final size:23
Alignment explanation
Indices: 15251953--15252011 Score: 59
Period size: 23 Copynumber: 2.6 Consensus size: 23
15251943 ATGTAATCCT
* *
15251953 AGATATGATATGTAATCTTTAGA
1 AGATACGATTTGTAATCTTTAGA
15251976 AGATACGATTCTGTAATC-TTAG-
1 AGATACGATT-TGTAATCTTTAGA
**
15251998 AGATTTGATTTGTA
1 AGATACGATTTGTA
15252012 GATAGCTTTT
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
21 4 0.13
22 8 0.26
23 12 0.39
24 7 0.23
ACGTcount: A:0.34, C:0.07, G:0.19, T:0.41
Consensus pattern (23 bp):
AGATACGATTTGTAATCTTTAGA
Found at i:15254945 original size:20 final size:20
Alignment explanation
Indices: 15254920--15254958 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
15254910 TATCTAACAT
15254920 ATAGGGTTCGCATGGAATAG
1 ATAGGGTTCGCATGGAATAG
*
15254940 ATAGGGTTCGCATGTAATA
1 ATAGGGTTCGCATGGAATA
15254959 ACAATTTAGG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.31, C:0.10, G:0.31, T:0.28
Consensus pattern (20 bp):
ATAGGGTTCGCATGGAATAG
Found at i:15255072 original size:67 final size:66
Alignment explanation
Indices: 15254899--15255093 Score: 282
Period size: 66 Copynumber: 2.9 Consensus size: 66
15254889 TTACAACATA
* * *
15254899 TAGGGTTCACATATCTAACATATAGGGTTCGCATGGAATAGATAGGGTTCGCATGTAATAACAAT
1 TAGGGTTCACATATCTAACATATGGGGTTCGCATGCAATAGATAGGGTTCGCATGTAATAATAAT
15254964 T
66 T
* * * ** *
15254965 TAGGGTTCACATATCTTACATATGGAGTTCGCATGCAATAGATAGGTTTTACATGTAATAATAGT
1 TAGGGTTCACATATCTAACATATGGGGTTCGCATGCAATAGATAGGGTTCGCATGTAATAATAAT
15255030 T
66 T
* *
15255031 TAGGGTCTCACAAACCTAACATATGGGGTTCGCATGCAATAGATAGGGTTCGCATGTAATAAT
1 TAGGGT-TCACATATCTAACATATGGGGTTCGCATGCAATAGATAGGGTTCGCATGTAATAAT
15255094 GTATAGGTTC
Statistics
Matches: 112, Mismatches: 16, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
66 63 0.56
67 49 0.44
ACGTcount: A:0.32, C:0.14, G:0.22, T:0.31
Consensus pattern (66 bp):
TAGGGTTCACATATCTAACATATGGGGTTCGCATGCAATAGATAGGGTTCGCATGTAATAATAAT
T
Found at i:15255123 original size:22 final size:22
Alignment explanation
Indices: 15255057--15255134 Score: 72
Period size: 22 Copynumber: 3.6 Consensus size: 22
15255047 TAACATATGG
*
15255057 GGTTCGCATGCAATAGA--TAG-
1 GGTTCGCATGTAATA-ATCTAGA
* *
15255077 GGTTCGCATGTAATAATGTATA
1 GGTTCGCATGTAATAATCTAGA
* *
15255099 GGTTCACATGTAATACTCTAGA
1 GGTTCGCATGTAATAATCTAGA
*
15255121 GGTTTGCATGTAAT
1 GGTTCGCATGTAAT
15255135 TATAGTTTAG
Statistics
Matches: 47, Mismatches: 8, Indels: 4
0.80 0.14 0.07
Matches are distributed among these distances:
19 1 0.02
20 14 0.30
21 2 0.04
22 30 0.64
ACGTcount: A:0.29, C:0.13, G:0.24, T:0.33
Consensus pattern (22 bp):
GGTTCGCATGTAATAATCTAGA
Found at i:15259619 original size:37 final size:37
Alignment explanation
Indices: 15259569--15259641 Score: 137
Period size: 37 Copynumber: 2.0 Consensus size: 37
15259559 TGCGACAAAT
15259569 GTTTGGCTATTTTACTTTATTCCATTAGTTTAATTTG
1 GTTTGGCTATTTTACTTTATTCCATTAGTTTAATTTG
*
15259606 GTTTGGTTATTTTACTTTATTCCATTAGTTTAATTT
1 GTTTGGCTATTTTACTTTATTCCATTAGTTTAATTT
15259642 AACTTAGTTT
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 35 1.00
ACGTcount: A:0.19, C:0.10, G:0.12, T:0.59
Consensus pattern (37 bp):
GTTTGGCTATTTTACTTTATTCCATTAGTTTAATTTG
Found at i:15259642 original size:18 final size:18
Alignment explanation
Indices: 15259579--15259642 Score: 56
Period size: 18 Copynumber: 3.5 Consensus size: 18
15259569 GTTTGGCTAT
*
15259579 TTTACTTTATTCCATTAG
1 TTTAATTTATTCCATTAG
* *** *
15259597 TTTAATTTGGTTTGGTTAT
1 TTTAATTT-ATTCCATTAG
*
15259616 TTTACTTTATTCCATTAG
1 TTTAATTTATTCCATTAG
15259634 TTTAATTTA
1 TTTAATTTA
15259643 ACTTAGTTTA
Statistics
Matches: 32, Mismatches: 13, Indels: 2
0.68 0.28 0.04
Matches are distributed among these distances:
18 20 0.62
19 12 0.38
ACGTcount: A:0.22, C:0.09, G:0.09, T:0.59
Consensus pattern (18 bp):
TTTAATTTATTCCATTAG
Done.