Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr08 ID=Chr08-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 57128820
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 677448 characters in sequence are not A, C, G, or T
File 72 of 190
Found at i:20822727 original size:212 final size:212
Alignment explanation
Indices: 20822338--20822738 Score: 472
Period size: 212 Copynumber: 1.9 Consensus size: 212
20822328 CTCTAAGGTG
* * *
20822338 TCGATGGTGCTCAAGGCTCCCGCACATCATAGCACTGAGGTGTCGATGGTGCCCGAGGCTCTTGC
1 TCGATGGTGCTCAAGGCTCCCGCACATCAGAGCACTGAGGTGCCGATGGTGCCCGAGGCTCTCGC
* * * *
20822403 AAGACCAAGGGCCTAGTTTGTCGATGGTGTCCAAGGCTCCTGCACAACCGAGCGCCCAGGTGCCG
66 AAGACCAAGGGCCTAGGTTGTCGATGGTGTCCAAGCCTCCCGCACAACCAAGCGCCCAGGTGCCG
* * *
20822468 ATTGTACCCGATGCTTTCGTACGACCAAAGGCCTAGGTAGCCGATGGTGCCAGAGGCTCCCCCAA
131 ATGGTACCCGATGCTTTCGCACGACCAAAGACCTAGGTAGCCGATGGTGCCAGAGGCTCCCCCAA
20822533 GACCAAGGCTTACTATT
196 GACCAAGGCTTACTATT
* * * * *
20822550 TCGATGGTG-TCCGAGGCTCCTGCACATCCGAGCACTTAGGTGCCGATGGTGTCCGAGGCTCTCG
1 TCGATGGTGCT-CAAGGCTCCCGCACATCAGAGCACTGAGGTGCCGATGGTGCCCGAGGCTCTCG
* * * * * *
20822614 TACGACCAAGGGCCTAGGTTGTCGATGGTG-CCTGAGCCTCCCGCACAACCAAGGGCCTAGTTTG
65 CAAGACCAAGGGCCTAGGTTGTCGATGGTGTCC-AAGCCTCCCGCACAACCAAGCGCCCAG-GTG
** * * *
20822678 CCGATGGTGTCCGA-GTTTTCCGCAC-ATCC-AAGCACCTAGGT-GTCGATGGTGCCCGAGGCTC
128 CCGATGGTACCCGATGCTTT-CGCACGA-CCAAAG-ACCTAGGTAGCCGATGGTGCCAGAGGCTC
20822739 TCGCACGACC
Statistics
Matches: 157, Mismatches: 26, Indels: 12
0.81 0.13 0.06
Matches are distributed among these distances:
211 3 0.02
212 128 0.82
213 26 0.17
ACGTcount: A:0.19, C:0.30, G:0.29, T:0.21
Consensus pattern (212 bp):
TCGATGGTGCTCAAGGCTCCCGCACATCAGAGCACTGAGGTGCCGATGGTGCCCGAGGCTCTCGC
AAGACCAAGGGCCTAGGTTGTCGATGGTGTCCAAGCCTCCCGCACAACCAAGCGCCCAGGTGCCG
ATGGTACCCGATGCTTTCGCACGACCAAAGACCTAGGTAGCCGATGGTGCCAGAGGCTCCCCCAA
GACCAAGGCTTACTATT
Found at i:20822757 original size:85 final size:84
Alignment explanation
Indices: 20822375--20822778 Score: 288
Period size: 85 Copynumber: 4.8 Consensus size: 84
20822365 CATAGCACTG
* * * * *
20822375 AGGTGTCGATGGTGCCCGAGGCTCTTGCAAGACCAAGGGCCTAGTTTGTCGATGGTGTCCAAGGC
1 AGGTGTCGATGGTGCCCGAGGCTCTCGCACGACCAAAGGCCTAGTTTGCCGATGGTGTCCGAGGC
* * *
20822440 TCCTGCACAACCGAGCGCCC
66 TCC-GCACAACCAAGCACCT
* * * * * * * *
20822460 AGGTGCCGATTGTACCCGATGCTTTCGTACGACCAAAGGCCTAGGTAGCCGATGGTG-CCAGAGG
1 AGGTGTCGATGGTGCCCGAGGCTCTCGCACGACCAAAGGCCTAGTTTGCCGATGGTGTCC-GAGG
*
20822524 CTCC-CCCAAGACCAAGGCTTA-CT
65 CTCCGCAC-A-ACCAA-GC--ACCT
* * * *
20822547 A--TTTCGATGGTGTCCGAGGCTC-CTGCAC-ATCC-GA-GCACTTAG-GTGCCGATGGTGTCCG
1 AGGTGTCGATGGTGCCCGAGGCTCTC-GCACGA-CCAAAGGC-C-TAGTTTGCCGATGGTGTCCG
* * **
20822605 AGGCTCTCGTACGACCAAGGGCCT
62 AGGCTC-CGCACAACCAAGCACCT
* * * * *
20822629 AGGTTGTCGATGGTGCCTGAGCCTCCCGCACAACCAAGGGCCTAGTTTGCCGATGGTGTCCGAGT
1 AGG-TGTCGATGGTGCCCGAGGCTCTCGCACGACCAAAGGCCTAGTTTGCCGATGGTGTCCGAG-
** *
20822694 TTTCCGCACATCCAAGCACCT
64 GCTCCGCACAACCAAGCACCT
* * *
20822715 AGGTGTCGATGGTGCCCGAGGCTCTCGCACGACCAAAGGCCTATTTTCCCGATGGTGCCCGAGG
1 AGGTGTCGATGGTGCCCGAGGCTCTCGCACGACCAAAGGCCTAGTTTGCCGATGGTGTCCGAGG
20822779 TTGCCGAGGC
Statistics
Matches: 240, Mismatches: 56, Indels: 47
0.70 0.16 0.14
Matches are distributed among these distances:
82 3 0.01
83 5 0.02
84 29 0.12
85 159 0.66
86 38 0.16
87 6 0.03
ACGTcount: A:0.19, C:0.30, G:0.30, T:0.21
Consensus pattern (84 bp):
AGGTGTCGATGGTGCCCGAGGCTCTCGCACGACCAAAGGCCTAGTTTGCCGATGGTGTCCGAGGC
TCCGCACAACCAAGCACCT
Found at i:20822904 original size:137 final size:138
Alignment explanation
Indices: 20822642--20822917 Score: 306
Period size: 137 Copynumber: 2.0 Consensus size: 138
20822632 TTGTCGATGG
* *
20822642 TGCCTGAGCCTCCCGCACAACCAAGGGCCTAGTTTGCCGATGGTGTCCGAGTTTTCCGCACATCC
1 TGCCTGAGCCTCCCGCACAACCAAGGGCCTAGTTTGCCGATGGTGTCCGAGCTCTCCGCACATCC
* * * * * *
20822707 AAGCACCTAGGTGTCGATGGTGCCCGAGGCTCTCGCACGACCAAAGGCCTATTTTCCCGATGGTG
66 AAGCACCTAGGTGCCAATGGTGCCCGAGGCACTCGCACGACCAAAGACCTATGTTACCGATGGTG
20822772 CCCGAGGT
131 CCCGAGGT
* * ** * * *
20822780 TGCC-GAGGCTCCCGCACTACCAAGGGTTTAGTTTGTCGATGGTGTCTCGGGCTCT-CGTACATC
1 TGCCTGAGCCTCCCGCACAACCAAGGGCCTAGTTTGCCGATGGTGTC-CGAGCTCTCCGCACATC
* * * * * *
20822843 CGAGCGCCTAGGTGCCAATGGTGCTCTAGGCACTCGCAC-CCCGAACGACCTATGTTACCGATGG
65 CAAGCACCTAGGTGCCAATGGTGCCCGAGGCACTCGCACGACC-AAAGACCTATGTTACCGATGG
* *
20822907 TGTCTGAGGT
129 TGCCCGAGGT
20822917 T
1 T
20822918 CTCGCACATC
Statistics
Matches: 113, Mismatches: 23, Indels: 5
0.80 0.16 0.04
Matches are distributed among these distances:
136 2 0.02
137 102 0.90
138 9 0.08
ACGTcount: A:0.17, C:0.31, G:0.28, T:0.24
Consensus pattern (138 bp):
TGCCTGAGCCTCCCGCACAACCAAGGGCCTAGTTTGCCGATGGTGTCCGAGCTCTCCGCACATCC
AAGCACCTAGGTGCCAATGGTGCCCGAGGCACTCGCACGACCAAAGACCTATGTTACCGATGGTG
CCCGAGGT
Found at i:20823223 original size:42 final size:41
Alignment explanation
Indices: 20823157--20825780 Score: 280
Period size: 43 Copynumber: 61.4 Consensus size: 41
20823147 GTTTAGTTTA
* * * * *
20823157 CCGATGGTGTCAGACGCTCCCGCACATCCGAGCACCCAGGTG
1 CCGATGGTG-CCGAGGCTCTCGCACATCCAAGCACCTAGGTG
** *
20823199 CCGATGGTGCACGAGGCTCTCGCACGA-CCAAGGGCCTTGGTTG
1 CCGATGGTGC-CGAGGCTCTCGCAC-ATCCAAGCACCTAGG-TG
* * * * *
20823242 CCGATGCTGTCTGAGGTTCCCGCACATCCAA-CACC-AAGT-
1 CCGATGGTG-CCGAGGCTCTCGCACATCCAAGCACCTAGGTG
*
20823281 -CGATGGTGCTC-AGGGCTC-CTGCACAT-CATAGCACCAAGGTG
1 CCGATGGTGC-CGA-GGCTCTC-GCACATCCA-AGCACCTAGGTG
* * * * * *
20823322 CCGGTGGTGCCCGAGGCTTTCACATATCCGAGCA-CTCAGGAG
1 CCGATGGTG-CCGAGGCTCTCGCACATCCAAGCACCT-AGGTG
* * * * * * **
20823364 CTGATGGTGCATGATGCTTTCGTACGA-CAAAGGGCCTAGGTAG
1 CCGATGGTGC-CGAGGCTCTCGCAC-ATCCAAGCACCTAGGT-G
* * * ** *
20823407 CCGATGGTGCCCGAGGCTCCCCCAAGAT-CAAGGGCCTAGTTTG
1 CCGATGGTG-CCGAGGCTCTCGC-ACATCCAAGCACCTAG-GTG
* * **
20823450 CCGATGGTGTCCGAGGCTCCCACACATCTGAGCACCTAGGTG
1 CCGATGGTG-CCGAGGCTCTCGCACATCCAAGCACCTAGGTG
* * * ** * *
20823492 CCTATGGTGTTCGAGGCTCTCGTACGA-CCAAGGGCTTAGGTTA
1 CCGATGGTG-CCGAGGCTCTCGCAC-ATCCAAGCACCTAGG-TG
20823535 CCGATGGTGCCCGAGGCTC-CAGCACATCCAAGCACCTAGGTG
1 CCGATGGTG-CCGAGGCTCTC-GCACATCCAAGCACCTAGGTG
** **
20823577 CCGATGGTGCCTGAGGCTCTCGCACGA-CCAAGGGCCTATTTTG
1 CCGATGGTGCC-GAGGCTCTCGCAC-ATCCAAGCACCTA-GGTG
* * * * * *
20823620 TCAATGGAGCCCGAGGCTCTAG-AGCCTCCCACA-CGACCAAGGGTTTAGTTTG
1 CCGATGGTG-CCGAGGCTCTCGCA-CAT-CCA-AGC-ACC-------TAG-GTG
* * *
20823672 CCGATGATGTCTGAGGCTCCCGCACATCCAAGCACCTAGGTG
1 CCGATGGTG-CCGAGGCTCTCGCACATCCAAGCACCTAGGTG
* **
20823714 TCGATGGTGCTCGAGGCTC-CTGCACGA-CCAAGGGCCTAGGTTG
1 CCGATGGTGC-CGAGGCTCTC-GCAC-ATCCAAGCACCTAGG-TG
* * * * * * *
20823757 TCGGTAGTGTTCGAGGCTCCCACACAT-CATAGCACCTCGGTG
1 CCGATGGTG-CCGAGGCTCTCGCACATCCA-AGCACCTAGGTG
* * * *
20823799 CTGATGGTGCCCGAGGCTCTCGTATGA-CCAAAG-GCCTAGGTTG
1 CCGATGGTG-CCGAGGCTCTCGCA-CATCC-AAGCACCTAGG-TG
* ** * * * *
20823842 CTGACAGTGTCCAAGGCTCCCACACAT-CATAGCACCGAGGTG
1 CCGATGGTG-CCGAGGCTCTCGCACATCCA-AGCACCTAGGTG
* * * * **
20823884 CCGGTGGTGCCCGAGGCTCCCGGACAACTGAGCACCTAGGTG
1 CCGATGGTG-CCGAGGCTCTCGCACATCCAAGCACCTAGGTG
* * * * ** * *
20823926 CCAATGGTGTCCGAGCCTTTCGCATGA-CCAAGGGCCTAAGTTA
1 CCGATGGTG-CCGAGGCTCTCGCA-CATCCAAGCACCT-AGGTG
* * * ** *
20823969 CCGATGGTTTCCGAGGCTCCCGCATGA-CCAAGGGCCTAGTTTG
1 CCGATGG-TGCCGAGGCTCTCGCA-CATCCAAGCACCTAG-GTG
* **** *
20824012 CCGATGATTTTTTAGGCTCCCGCACATCCAAGCACCTA--TG
1 CCGATG-GTGCCGAGGCTCTCGCACATCCAAGCACCTAGGTG
* * *
20824052 ACTCGATGGTGCCTGAGGCACTTGCACGA-CCAAGGGCCTATTTTACCAATGGTG
1 -C-CGATGGTGCC-GAGGCTCTCGCAC-ATCCAA--G-C------ACCTA-GGTG
* * * * * **** *
20824106 CC-CTAGTCTCCCGAGCCTCTCGCACAACCAAGGGTTTAGTTTG
1 CCGAT-G-GTGCCGAGGCTCTCGCACATCCAAGCACCTAG-GTG
*
20824149 TCGATGGTGTCC-AGGGCTCTCGCACATCCGAACGC-CC-AGGTG
1 CCGATGGTG-CCGA-GGCTCTCGCACATCC-AA-GCACCTAGGTG
* * * * ** * *
20824191 CCGATGGCGCCCTAGG-TAGTCGCACGA-CGAAGGGCCTATGTTA
1 CCGATGGTG-CCGAGGCT-CTCGCAC-ATCCAAGCACCTA-GGTG
* * *
20824234 CCGATGGTGTCCGAGGTTCTAGCACATCCAAGCACCAAGGTG
1 CCGATGGTG-CCGAGGCTCTCGCACATCCAAGCACCTAGGTG
* * * * **
20824276 TCGATGGTACTCGAGGCTCCCGCATGA-CCAAGGGCCTAGGTTG
1 CCGATGGTGC-CGAGGCTCTCGCA-CATCCAAGCACCTAGG-TG
* * * *
20824319 CCTG-TAGTGTCTGAGGCTCCCGCACAT-CATAGCACCAAGGTG
1 CC-GATGGTG-CCGAGGCTCTCGCACATCCA-AGCACCTAGGTG
* * *
20824361 CCGATGGTGCCCGAGGCTCCCACACGA-CCAAAGGCA--TAGTTTG
1 CCGATGGTG-CCGAGGCTCTCGCAC-ATCC-AA-GCACCTAG-GTG
* * * * * * *
20824404 CCGATGGCGTCCGAGGCTCCCCCACATCCGAGCGCCCAGGTA
1 CCGATGGTG-CCGAGGCTCTCGCACATCCAAGCACCTAGGTG
* * * **
20824446 CCGATGATGCCCGAGGCTTTCACACGAAT--AAGGGCCTAGGTAG
1 CCGATGGTG-CCGAGGCTCTCGCAC--ATCCAAGCACCTAGGT-G
* * * *** *
20824489 CCCATGGTGCCTGAGGCTTTCGCA-AGACCAAGGGTCTAGTTTG
1 CCGATGGTGCC-GAGGCTCTCGCACA-TCCAAGCACCTAG-GTG
* * * * *
20824532 CCGATGGCGTCCAAGGCTCTCGCACATCCGAGCGGCC-AAGTG
1 CCGATGGTG-CCGAGGCTCTCGCACATCCAAGC-ACCTAGGTG
* * * **
20824574 TCGATGTTGCCCGAGGCTCTCGCACAACCAAGGGCCTAGGTTG
1 CCGATGGTG-CCGAGGCTCTCGCACATCCAAGCACCTAGG-TG
* * **
20824617 CCGATGGTGCCCAAGGCTCTCGTACGA-CCAAGGGCCTAGGTTG
1 CCGATGGTG-CCGAGGCTCTCGCAC-ATCCAAGCACCTAGG-TG
** * * * *
20824660 TTGATGGTGTCCAAGGCTCCCGCACATCCTAGCACCAAGGTG
1 CCGATGGTG-CCGAGGCTCTCGCACATCCAAGCACCTAGGTG
* * ** *
20824702 TCGATGGTGCTCAAGGCTCTTACACAT-CATAGCACCGAGGTG
1 CCGATGGTGC-CGAGGCTCTCGCACATCCA-AGCACCTAGGTG
* * * ** * *
20824744 CCGGTTGTGGCCGAGGCTCCCGCACGA-CCAAGGGCCTAGTTTA
1 CCGATGGT-GCCGAGGCTCTCGCAC-ATCCAAGCACCTAG-GTG
* * * **
20824787 CCGATAGTGTCCGAGGCT-TCTGCACATCCGAGCACCCAGAAG
1 CCGATGGTG-CCGAGGCTCTC-GCACATCCAAGCACCTAGGTG
* * * **
20824829 CCGATGGTGCCTGATGCTTTCGTACGA-CCAAGGGCCTAGGTAG
1 CCGATGGTGCC-GAGGCTCTCGCAC-ATCCAAGCACCTAGGT-G
* * * * ** *
20824872 CCGATGGTACCCGAGGCTCCCCCAAAAT-CAAGGGCCTAGTTTG
1 CCGATGGT-GCCGAGGCTCTCGC-ACATCCAAGCACCTAG-GTG
* * * * * **
20824915 CCGAAGGTGTCTGAGTCTCCCGTACATCTGAGCACCTAGGTG
1 CCGATGGTG-CCGAGGCTCTCGCACATCCAAGCACCTAGGTG
* * **
20824957 TCAATGGTGTCCGAGGCTCTCGCACGA-CCAAGGGCCTAGGTTG
1 CCGATGGTG-CCGAGGCTCTCGCAC-ATCCAAGCACCTAGG-TG
* * * * * *
20825000 CCGATGGTCCTCGAGGCTCCCACACAACCAAGGACCTAGTTTG
1 CCGATGGTGC-CGAGGCTCTCGCACATCCAAGCACCTAG-GTG
** * * * * * *
20825043 CCGATAATGTCTGAGGCTCCCGTACATCCAGGCGCCTAGGTA
1 CCGATGGTG-CCGAGGCTCTCGCACATCCAAGCACCTAGGTG
* * *
20825085 CCGATGGTGCCCGAGGCTCTCGCACGA-CCAAAG-GCCTAGTTTA
1 CCGATGGTG-CCGAGGCTCTCGCAC-ATCC-AAGCACCTAG-GTG
* *
20825128 CCGATGGTGTCTGGGGCT-TCCGCACATCCGAACGC-CC-AGGTG
1 CCGATGGTG-CCGAGGCTCT-CGCACATCC-AA-GCACCTAGGTG
* * * * ** * *
20825170 CCGATGGTGCCCTAGGCACTCACACGA-CGAAGGGCCTATGTTA
1 CCGATGGTG-CCGAGGCTCTCGCAC-ATCCAAGCACCTA-GGTG
* * * * *
20825213 TCGATGGTGTCCTAGGTTCTCGCACGTCCAAGCACCAAGGTG
1 CCGATGGTG-CCGAGGCTCTCGCACATCCAAGCACCTAGGTG
* * * ** *
20825255 TCGATGGTGATCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTA
1 CCGATGGTG-CCGAGGCTCTCGCAC-ATCCAAGCACCTAGG-TG
* * ** * * *
20825298 CTGATAGTTTTCGAGGCTCTCGTACAT-CATTGTA-CTGAGGTG
1 CCGAT-GGTGCCGAGGCTCTCGCACATCCA-AGCACCT-AGGTG
* **
20825340 CCGATGGTGCCCGAGGCTCTTGCACGA-CCAAGGGCCTAGGTTG
1 CCGATGGTG-CCGAGGCTCTCGCAC-ATCCAAGCACCTAGG-TG
* ** * * * * *
20825383 CTGACAGTGTCCAAGGCTCCCGTACAT-CATAGCATCGAGGTG
1 CCGATGGTG-CCGAGGCTCTCGCACATCCA-AGCACCTAGGTG
* ** * *
20825425 CCGATGGTGCCCGAGGCT-TCCGAACGA-CCAAGGGCGTAGTTTG
1 CCGATGGTG-CCGAGGCTCT-CGCAC-ATCCAAGCACCTAG-GTG
* * * * *
20825468 TCGATGTTGTCTGAGGCTCTCGCACATCCGAGCACCCAGGTG
1 CCGATGGTG-CCGAGGCTCTCGCACATCCAAGCACCTAGGTG
* * * * * *
20825510 TCGATGGTACCTGAGGCTTTCACACGA-CTAAAG-GCCTAGGTAG
1 CCGATGGTGCC-GAGGCTCTCGCAC-ATC-CAAGCACCTAGGT-G
* * * * *
20825553 CCGATGGTGCCCGAGGCTCCCGCA-AGACTGAAG-GCCTAGTTTG
1 CCGATGGTG-CCGAGGCTCTCGCACA-TC-CAAGCACCTAG-GTG
* * * * * *
20825596 CTGATGGTGTCTGAGGCT-TGCGCACATCCAAACGCCCAGGTA
1 CCGATGGTG-CCGAGGCTCT-CGCACATCCAAGCACCTAGGTG
* *
20825638 CCGATGGT-CCTGAGGCTCTCGTACGA-CCAAGGGA-CTAGGTTG
1 CCGATGGTGCC-GAGGCTCTCGCAC-ATCCAA-GCACCTAGG-TG
* **
20825680 CCGATGGTGCCCGAGGCTCTCGCACAACCAAG-GGCTGAGGTTG
1 CCGATGGTG-CCGAGGCTCTCGCACATCCAAGCACCT-AGG-TG
* * * * * *
20825723 TCGATGGTGTCTGAGGCTCCCGCACATCCTAGTACCAAGGTG
1 CCGATGGTG-CCGAGGCTCTCGCACATCCAAGCACCTAGGTG
20825765 CCGATGGTGCCTGAGG
1 CCGATGGTGCC-GAGG
20825781 ACCCCACACG
Statistics
Matches: 1830, Mismatches: 535, Indels: 434
0.65 0.19 0.16
Matches are distributed among these distances:
37 5 0.00
38 18 0.01
39 4 0.00
40 10 0.01
41 54 0.03
42 738 0.40
43 887 0.48
44 50 0.03
45 5 0.00
50 5 0.00
51 10 0.01
52 37 0.02
53 5 0.00
54 2 0.00
ACGTcount: A:0.20, C:0.30, G:0.29, T:0.21
Consensus pattern (41 bp):
CCGATGGTGCCGAGGCTCTCGCACATCCAAGCACCTAGGTG
Found at i:20823499 original size:85 final size:86
Alignment explanation
Indices: 20823398--20825103 Score: 367
Period size: 85 Copynumber: 19.8 Consensus size: 86
20823388 CGACAAAGGG
* * * * *
20823398 CCTAGGTAGCCGATGGTGCCCGAGGCTCCCCCAAGATCAAGGGCCTAGTTTGCCGATGGTGTCCG
1 CCTAGGT-GCCGATGGTGCCCGAGGCTCTCGCACGACCAAGGGCCTAGTTTGCCGATGGTGCCCG
**
20823463 AGGCTCCCA-CACATCTGAGCA
65 AGGCTCCCAGCACATCCAAGCA
* ** * * * *
20823484 CCTAGGTGCCTATGGTGTTCGAGGCTCTCGTACGACCAAGGGCTTAGGTTACCGATGGTGCCCGA
1 CCTAGGTGCCGATGGTGCCCGAGGCTCTCGCACGACCAAGGGCCTAGTTTGCCGATGGTGCCCGA
20823549 GGCT-CCAGCACATCCAAGCA
66 GGCTCCCAGCACATCCAAGCA
* * * * *
20823569 CCTAGGTGCCGATGGTGCCTGAGGCTCTCGCACGACCAAGGGCCTATTTTGTCAATGGAGCCCGA
1 CCTAGGTGCCGATGGTGCCCGAGGCTCTCGCACGACCAAGGGCCTAGTTTGCCGATGGTGCCCGA
** * **
20823634 GGCTCTAGAGCCTCCCACACGACCAAGGG
66 GGCTC-----CC-AGCACA--TCCAAGCA
** * * * * * ** * * *
20823663 TTTAGTTTGCCGATGATGTCTGAGGCTCCCGCAC-ATCCAAGCACCTAG-GTGTCGATGGTGCTC
1 CCTAG-GTGCCGATGGTGCCCGAGGCTCTCGCACGA-CCAAGGGCCTAGTTTGCCGATGGTGCCC
* **
20823726 GAGGCT-CCTGCACGA-CCAAGGG
64 GAGGCTCCCAGCAC-ATCCAAGCA
* * * ** * * * ** * * *
20823748 CCTAGGTTGTCGGTAGTGTTCGAGGCTCCCACAC-ATCATAGCACCTCG-GTGCTGATGGTGCCC
1 CCTAGG-TGCCGATGGTGCCCGAGGCTCTCGCACGACCA-AGGGCCTAGTTTGCCGATGGTGCCC
* * * *
20823811 GAGGCTCTC-GTATGA-CCAAAG-G
64 GAGGCTCCCAGCA-CATCC-AAGCA
* ** * * * * * ** * * *
20823833 CCTAGGTTGCTGACAGTGTCCAAGGCTCCCACAC-ATCATAGCACCGAG-GTGCCGGTGGTGCCC
1 CCTAGG-TGCCGATGGTGCCCGAGGCTCTCGCACGACCA-AGGGCCTAGTTTGCCGATGGTGCCC
* * **
20823896 GAGGCTCCC-GGACAACTGAGCA
64 GAGGCTCCCAGCACATCCAAGCA
* * * * * * **
20823918 CCTAGGTGCCAATGGTGTCCGAGCCTTTCGCATGACCAAGGGCCTAAG-TTACCGATGGTTTCCG
1 CCTAGGTGCCGATGGTGCCCGAGGCTCTCGCACGACCAAGGGCCT-AGTTTGCCGATGGTGCCCG
* **
20823982 AGGCTCCC-GCATGA-CCAAGGG
65 AGGCTCCCAGCA-CATCCAAGCA
* * ***** * **
20824003 CCTAGTTTGCCGATGATTTTTTAGGCTCCCGCAC-ATCCAAGCACCTA---TGACTCGATGGTGC
1 CCTAG-GTGCCGATGGTGCCCGAGGCTCTCGCACGA-CCAAGGGCCTAGTTTG-C-CGATGGTGC
* * **
20824064 CTGAGGC-ACTTGCACGA-CCAAGGGCCTATTTTA
62 CCGAGGCTCCCAGCAC-ATCCAA--G-C------A
* * * * * * ** * *
20824097 CCAATGGTGCC-CTAGTCTCCCGAGCCTCTCGCACAACCAAGGGTTTAGTTTGTCGATGGTGTCC
1 CCTA-GGTGCCGATGGT-GCCCGAGGCTCTCGCACGACCAAGGGCCTAGTTTGCCGATGGTGCCC
*
20824161 -AGGGCTCTC-GCACATCCGAACGC-
64 GA-GGCTCCCAGCACATCC-AA-GCA
* * * * * *
20824184 CC-AGGTGCCGATGGCGCCCTAGG-TAGTCGCACGACGAAGGGCCTA-TGTTACCGATGGTGTCC
1 CCTAGGTGCCGATGGTGCCCGAGGCT-CTCGCACGACCAAGGGCCTAGT-TTGCCGATGGTGCCC
* *
20824246 GAGG-TTCTAGCACATCCAAGCA
64 GAGGCTCCCAGCACATCCAAGCA
* * * * * * * * * *
20824268 CCAAGGTGTCGATGGTACTCGAGGCTCCCGCATGACCAAGGGCCTAGGTTGCCTG-TAGTGTCTG
1 CCTAGGTGCCGATGGTGCCCGAGGCTCTCGCACGACCAAGGGCCTAGTTTGCC-GATGGTGCCCG
20824332 AGGCTCCC-GCACAT-CATAGCA
65 AGGCTCCCAGCACATCCA-AGCA
* * * * * * *
20824353 CCAAGGTGCCGATGGTGCCCGAGGCTCCCACACGACCAAAGGCATAGTTTGCCGATGGCGTCCGA
1 CCTAGGTGCCGATGGTGCCCGAGGCTCTCGCACGACCAAGGGCCTAGTTTGCCGATGGTGCCCGA
* * *
20824418 GGCTCCC-CCACATCCGAGCG
66 GGCTCCCAGCACATCCAAGCA
* * * * * ** * * * *
20824438 CCCAGGTACCGATGATGCCCGAGGCTTTCACACGAATAAGGGCCTAGGTAGCCCATGGTGCCTGA
1 CCTAGGTGCCGATGGTGCCCGAGGCTCTCGCACGACCAAGGGCCTAGTTTGCCGATGGTGCCCGA
** * **
20824503 GGCTTTC-GCA-AGACCAAGGG
66 GGCTCCCAGCACA-TCCAAGCA
* * * * * * * * *
20824523 TCTAGTTTGCCGATGGCGTCCAAGGCTCTCGCAC-ATCCGAGCGGCCAAG--TGTCGATGTTGCC
1 CCTAG-GTGCCGATGGTGCCCGAGGCTCTCGCACGA-CCAAG-GGCCTAGTTTGCCGATGGTGCC
* * **
20824585 CGAGGCTCTC-GCACAACCAAGGG
63 CGAGGCTCCCAGCACATCCAAGCA
* * * ** * *
20824608 CCTAGGTTGCCGATGGTGCCCAAGGCTCTCGTACGACCAAGGGCCTAGGTTGTTGATGGTGTCCA
1 CCTAGG-TGCCGATGGTGCCCGAGGCTCTCGCACGACCAAGGGCCTAGTTTGCCGATGGTGCCCG
*
20824673 AGGCTCCC-GCACATCCTAGCA
65 AGGCTCCCAGCACATCCAAGCA
* * * * ** * ** * * * * *
20824694 CCAAGGTGTCGATGGTGCTCAAGGCTCTTACAC-ATCATAGCACCGAG-GTGCCGGTTGTGGCCG
1 CCTAGGTGCCGATGGTGCCCGAGGCTCTCGCACGACCA-AGGGCCTAGTTTGCCGATGGTGCCCG
**
20824757 AGGCTCCC-GCACGA-CCAAGGG
65 AGGCTCCCAGCAC-ATCCAAGCA
* * * * * ** * **
20824778 CCTAGTTTACCGATAGTGTCCGAGGCT-TCTGCAC-ATCCGAGCACCCAG-AAGCCGATGGTGCC
1 CCTAG-GTGCCGATGGTGCCCGAGGCTCTC-GCACGA-CCAAGGGCCTAGTTTGCCGATGGTGCC
* * ** * **
20824840 TGATGCTTTC-GTACGA-CCAAGGG
63 CGAGGCTCCCAGCAC-ATCCAAGCA
* * * ** * * * *
20824863 CCTAGGTAGCCGATGGTACCCGAGGCTCCCCCAAAATCAAGGGCCTAGTTTGCCGAAGGTGTCTG
1 CCTAGGT-GCCGATGGTGCCCGAGGCTCTCGCACGACCAAGGGCCTAGTTTGCCGATGGTGCCCG
* * **
20824928 AGTCTCCC-GTACATCTGAGCA
65 AGGCTCCCAGCACATCCAAGCA
* * * *
20824949 CCTAGGTGTCAATGGTGTCCGAGGCTCTCGCACGACCAAGGGCCTAGGTTGCCGATGGT-CCTCG
1 CCTAGGTGCCGATGGTGCCCGAGGCTCTCGCACGACCAAGGGCCTAGTTTGCCGATGGTGCC-CG
* *
20825013 AGGCTCCCA-CACAACCAAGGA
65 AGGCTCCCAGCACATCCAAGCA
* ** * * * * * *
20825034 CCTAGTTTGCCGATAATGTCTGAGGCTCCCGTAC-ATCC-AGGCGCCTAG-GTACCGATGGTGCC
1 CCTAG-GTGCCGATGGTGCCCGAGGCTCTCGCACGA-CCAAGG-GCCTAGTTTGCCGATGGTGCC
20825096 CGAGGCTC
63 CGAGGCTC
20825104 TCGCACGACC
Statistics
Matches: 1185, Mismatches: 348, Indels: 175
0.69 0.20 0.10
Matches are distributed among these distances:
83 3 0.00
84 83 0.07
85 799 0.67
86 165 0.14
87 12 0.01
88 3 0.00
91 2 0.00
92 4 0.00
93 2 0.00
94 54 0.05
95 54 0.05
96 2 0.00
97 2 0.00
ACGTcount: A:0.20, C:0.31, G:0.29, T:0.20
Consensus pattern (86 bp):
CCTAGGTGCCGATGGTGCCCGAGGCTCTCGCACGACCAAGGGCCTAGTTTGCCGATGGTGCCCGA
GGCTCCCAGCACATCCAAGCA
Found at i:20823773 original size:43 final size:42
Alignment explanation
Indices: 20823684--20823817 Score: 121
Period size: 42 Copynumber: 3.2 Consensus size: 42
20823674 GATGATGTCT
*
20823684 GAGGCTCCCGCACATCCAAGCACCTAGGTGTCGATGGTGCTC
1 GAGGCTCCCGCACATCCAAGCACCTAGGTGTCGATAGTGCTC
* ** * *
20823726 GAGGCTCCTGCACGA-CCAAGGGCCTAGGTTGTCGGTAGTGTTC
1 GAGGCTCCCGCAC-ATCCAAGCACCTAGG-TGTCGATAGTGCTC
* * * *
20823769 GAGGCTCCCACACAT-CATAGCACCTCGGTG-CTGATGGTGCCC
1 GAGGCTCCCGCACATCCA-AGCACCTAGGTGTC-GATAGTGCTC
20823811 GAGGCTC
1 GAGGCTC
20823818 TCGTATGACC
Statistics
Matches: 72, Mismatches: 15, Indels: 10
0.74 0.15 0.10
Matches are distributed among these distances:
41 1 0.01
42 41 0.57
43 30 0.42
ACGTcount: A:0.18, C:0.31, G:0.31, T:0.20
Consensus pattern (42 bp):
GAGGCTCCCGCACATCCAAGCACCTAGGTGTCGATAGTGCTC
Found at i:20824462 original size:477 final size:476
Alignment explanation
Indices: 20823401--20824486 Score: 1091
Period size: 477 Copynumber: 2.3 Consensus size: 476
20823391 CAAAGGGCCT
* * * * *
20823401 AGGTAGCCGATGGTGCCCGAGGCTCCCCCAAGATCAAGGGCCTAGTTTGCCGATGGTGTCCGAGG
1 AGGT-GCCGATGGTGCCCGAGGCTCCCACACGAACAAAGGCATAGTTTGCCGATGGTGTCCGAGG
* * * * * * * * *
20823466 CTCCCACACATCTGAGCACCTAGGTGCCTATGGTGTTCGAGGCTCTCGTACGACCAAGGGCTTAG
65 CTCCCACACATCCGAGCGCCAAGGTACCGATGGTGTCCGAGGCTCCCGCACGACCAAGGGCCTAG
* *
20823531 GTTACCGATGGTGCCCGAGGCTCCAGCACATCCAAGCACCTAGGTGCCGATGGTGCCTGAGGCTC
130 GTTACCGATGATGCCCGAGGCTCCAGCACATCCAAGCACCTA-GTGCCGATGGTGCCTGAGGCAC
** * *
20823596 TCGCACGACCAAGGGCCTATTTTGTCAATGGAGCCCGAGGCTCTAGAGCCTCCCACACGACCAAG
194 TCGCACGACCAAGGGCCTATTTTACCAATGGAGCCCGAGGCTCCAGAGCCTCCCACACAACCAAG
* * * *
20823661 GGTTTAGTTTGCCGATGATGTCTGAGGCTCCCGCACATCCAAGCACCTAGGTGTCGATGGTGCTC
259 GGTTTAGTTTGCCGATGATGTCAGAGGCTCCCGCACATCCAAGCACCTAGGTGCCGATGGCGCCC
* ** * *
20823726 GAGGCTCCTGCACGACCAAGGGCCTAGGTTGTCGGTAGTGTTCGAGGCTCCCACACATCATAGCA
324 GAGGCTACTGCACGACCAAGGGCCTAGGTTACCGATAGTGTCCGAGGCTCCCACACATCATAGCA
** * * *
20823791 CCTCGGTGCTGATGGTGCCCGAGGCTCTCGTATGACCAAAGGCCTAGGTTGCTGACAGTGTCCAA
389 CCAAGGTGCTGATGGTACCCGAGGCTCCCGCATGACCAAAGGCCTAGGTTGCTGACAGTGTCCAA
*
20823856 GGCTCCCACACATCATAGCACCG
454 GGCTCCCACACATCATAGCACCA
* ** ** * *
20823879 AGGTGCCGGTGGTGCCCGAGGCTCCCGGAC-AACTGA-GCACCTAG-GTGCCAATGGTGTCCGAG
1 AGGTGCCGATGGTGCCCGAGGCTCCCACACGAACAAAGGCA--TAGTTTGCCGATGGTGTCCGAG
* ** * * * * * * *
20823941 CCTTTCGCATGA-CCAAGGGCCTAAGTTACCGATGGTTTCCGAGGCTCCCGCATGACCAAGGGCC
64 GCTCCCACA-CATCCGAGCGCC-AAGGTACCGATGGTGTCCGAGGCTCCCGCACGACCAAGGGCC
* * ***** *
20824005 TAGTTTGCCGATGATTTTTTAGGCTCCCGCACATCCAAGCACCTA-TGACTCGATGGTGCCTGAG
127 TAGGTTACCGATGATGCCCGAGGCTCCAGCACATCCAAGCACCTAGTG-C-CGATGGTGCCTGAG
* * * * * * *
20824069 GCACTTGCACGACCAAGGGCCTATTTTACCAATGGTGCCCTAGTCTCCCGAGCCTCTCGCACAAC
190 GCACTCGCACGACCAAGGGCCTATTTTACCAATGGAGCCCGAGGCTCCAGAGCCTCCCACACAAC
* * *
20824134 CAAGGGTTTAGTTTGTCGATGGTGTCCAG-GGCTCTCGCACATCCGAACGC-CC-AGGTGCCGAT
255 CAAGGGTTTAGTTTGCCGATGATGT-CAGAGGCTCCCGCACATCC-AA-GCACCTAGGTGCCGAT
* * * * * * *
20824196 GGCGCCCTAGG-TAGTCGCACGACGAAGGGCCTATGTTACCGATGGTGTCCGAGG-TTCTAGCAC
317 GGCGCCCGAGGCTACT-GCACGACCAAGGGCCTAGGTTACCGATAGTGTCCGAGGCTCCCA-CAC
* *
20824259 ATCCA-AGCACCAAGGTG-TCGATGGTACTCGAGGCTCCCGCATGACCAAGGGCCTAGGTTGCCT
380 AT-CATAGCACCAAGGTGCT-GATGGTACCCGAGGCTCCCGCATGACCAAAGGCCTAGGTTG-CT
* ** *
20824322 G-TAGTGTCTGAGGCTCCCGCACATCATAGCACCA
442 GACAGTGTCCAAGGCTCCCACACATCATAGCACCA
* *
20824356 AGGTGCCGATGGTGCCCGAGGCTCCCACACGACCAAAGGCATAGTTTGCCGATGGCGTCCGAGGC
1 AGGTGCCGATGGTGCCCGAGGCTCCCACACGAACAAAGGCATAGTTTGCCGATGGTGTCCGAGGC
* * * * ** * **
20824421 TCCCCCACATCCGAGCGCCCAGGTACCGATGATGCCCGAGGCTTTCACACGAATAAGGGCCTAGG
66 TCCCACACATCCGAGCGCCAAGGTACCGATGGTGTCCGAGGCTCCCGCACGACCAAGGGCCTAGG
20824486 T
131 T
20824487 AGCCCATGGT
Statistics
Matches: 480, Mismatches: 110, Indels: 37
0.77 0.18 0.06
Matches are distributed among these distances:
475 4 0.01
476 35 0.07
477 391 0.81
478 45 0.09
479 5 0.01
ACGTcount: A:0.20, C:0.31, G:0.29, T:0.21
Consensus pattern (476 bp):
AGGTGCCGATGGTGCCCGAGGCTCCCACACGAACAAAGGCATAGTTTGCCGATGGTGTCCGAGGC
TCCCACACATCCGAGCGCCAAGGTACCGATGGTGTCCGAGGCTCCCGCACGACCAAGGGCCTAGG
TTACCGATGATGCCCGAGGCTCCAGCACATCCAAGCACCTAGTGCCGATGGTGCCTGAGGCACTC
GCACGACCAAGGGCCTATTTTACCAATGGAGCCCGAGGCTCCAGAGCCTCCCACACAACCAAGGG
TTTAGTTTGCCGATGATGTCAGAGGCTCCCGCACATCCAAGCACCTAGGTGCCGATGGCGCCCGA
GGCTACTGCACGACCAAGGGCCTAGGTTACCGATAGTGTCCGAGGCTCCCACACATCATAGCACC
AAGGTGCTGATGGTACCCGAGGCTCCCGCATGACCAAAGGCCTAGGTTGCTGACAGTGTCCAAGG
CTCCCACACATCATAGCACCA
Found at i:20824522 original size:43 final size:43
Alignment explanation
Indices: 20824122--20825775 Score: 396
Period size: 43 Copynumber: 38.9 Consensus size: 43
20824112 TCTCCCGAGC
** * * * *
20824122 CTCTCGCACAACCAAGGGTTTAGTTTGTCGATGGTGTCCAGGG
1 CTCTCGCACAACCAAGGGCCTAGGTTGCCGATGGTGCCCAAGG
* * * * *
20824165 CTCTCGCACATCCGAA-CGCCCAGG-TGCCGATGGCGCCCTAGG
1 CTCTCGCACAACC-AAGGGCCTAGGTTGCCGATGGTGCCCAAGG
* * * * * * *
20824207 -TAGTCGCACGACGAAGGGCCTATGTTACCGATGGTGTCCGAGG
1 CT-CTCGCACAACCAAGGGCCTAGGTTGCCGATGGTGCCCAAGG
* * * ** * * * * *
20824250 TTCTAGCACATCCAAGCACCAAGG-TGTCGATGGTACTCGAGG
1 CTCTCGCACAACCAAGGGCCTAGGTTGCCGATGGTGCCCAAGG
* ** * * **
20824292 CTCCCGCATGACCAAGGGCCTAGGTTGCCTG-TAGTGTCTGAGG
1 CTCTCGCACAACCAAGGGCCTAGGTTGCC-GATGGTGCCCAAGG
* * ** * *
20824335 CTCCCGCAC-ATCATAGCACCAAGG-TGCCGATGGTGCCCGAGG
1 CTCTCGCACAACCA-AGGGCCTAGGTTGCCGATGGTGCCCAAGG
* * * * * * * * *
20824377 CTCCCACACGACCAAAGGCATAGTTTGCCGATGGCGTCCGAGG
1 CTCTCGCACAACCAAGGGCCTAGGTTGCCGATGGTGCCCAAGG
* * * * * * * * *
20824420 CTCCCCCACATCCGAGCGCCCAGG-TACCGATGATGCCCGAGG
1 CTCTCGCACAACCAAGGGCCTAGGTTGCCGATGGTGCCCAAGG
* * * * * **
20824462 CTTTCACACGAA-TAAGGGCCTAGGTAGCCCATGGTGCCTGAGG
1 CTCTCGCAC-AACCAAGGGCCTAGGTTGCCGATGGTGCCCAAGG
* * * * *
20824505 CTTTCGCA-AGACCAAGGGTCTAGTTTGCCGATGGCGTCCAAGG
1 CTCTCGCACA-ACCAAGGGCCTAGGTTGCCGATGGTGCCCAAGG
* * * * * *
20824548 CTCTCGCACATCCGAGCGGCC-AAG-TGTCGATGTTGCCCGAGG
1 CTCTCGCACAACCAAG-GGCCTAGGTTGCCGATGGTGCCCAAGG
20824590 CTCTCGCACAACCAAGGGCCTAGGTTGCCGATGGTGCCCAAGG
1 CTCTCGCACAACCAAGGGCCTAGGTTGCCGATGGTGCCCAAGG
* * ** *
20824633 CTCTCGTACGACCAAGGGCCTAGGTTGTTGATGGTGTCCAAGG
1 CTCTCGCACAACCAAGGGCCTAGGTTGCCGATGGTGCCCAAGG
* * * ** * * *
20824676 CTCCCGCACATCCTAGCACCAAGG-TGTCGATGGTGCTCAAGG
1 CTCTCGCACAACCAAGGGCCTAGGTTGCCGATGGTGCCCAAGG
** * ** * * * * *
20824718 CTCTTACAC-ATCATAGCACCGAGG-TGCCGGTTGTGGCCGAGG
1 CTCTCGCACAACCA-AGGGCCTAGGTTGCCGATGGTGCCCAAGG
* * * * * * *
20824760 CTCCCGCACGACCAAGGGCCTAGTTTACCGATAGTGTCCGAGG
1 CTCTCGCACAACCAAGGGCCTAGGTTGCCGATGGTGCCCAAGG
* * ** * ** ** *
20824803 CT-TCTGCACATCCGAGCACCCA-GAAGCCGATGGTGCCTGATG
1 CTCTC-GCACAACCAAGGGCCTAGGTTGCCGATGGTGCCCAAGG
* * * * * *
20824845 CTTTCGTACGACCAAGGGCCTAGGTAGCCGATGGTACCCGAGG
1 CTCTCGCACAACCAAGGGCCTAGGTTGCCGATGGTGCCCAAGG
* * * * * * * ** *
20824888 CTCCCCCAAAATCAAGGGCCTAGTTTGCCGAAGGTGTCTGAGT
1 CTCTCGCACAACCAAGGGCCTAGGTTGCCGATGGTGCCCAAGG
* * * ** ** * * * *
20824931 CTCCCGTACATCTGAGCACCTAGG-TGTCAATGGTGTCCGAGG
1 CTCTCGCACAACCAAGGGCCTAGGTTGCCGATGGTGCCCAAGG
* *
20824973 CTCTCGCACGACCAAGGGCCTAGGTTGCCGATGGT-CCTCGAGG
1 CTCTCGCACAACCAAGGGCCTAGGTTGCCGATGGTGCC-CAAGG
* * * * ** * **
20825016 CTCCCACACAACCAAGGACCTAGTTTGCCGATAATGTCTGAGG
1 CTCTCGCACAACCAAGGGCCTAGGTTGCCGATGGTGCCCAAGG
* * * * *
20825059 CTCCCGTACATCC-AGGCGCCTAGG-TACCGATGGTGCCCGAGG
1 CTCTCGCACAACCAAGG-GCCTAGGTTGCCGATGGTGCCCAAGG
* * * * * ***
20825101 CTCTCGCACGACCAAAGGCCTAGTTTACCGATGGTGTCTGGGG
1 CTCTCGCACAACCAAGGGCCTAGGTTGCCGATGGTGCCCAAGG
* * * *
20825144 CT-TCCGCACATCCGAA-CGCCCAGG-TGCCGATGGTGCCCTAGG
1 CTCT-CGCACAACC-AAGGGCCTAGGTTGCCGATGGTGCCCAAGG
* * * * * ** * *
20825186 CACTCACACGACGAAGGGCCTATGTTATCGATGGTGTCCTAGG
1 CTCTCGCACAACCAAGGGCCTAGGTTGCCGATGGTGCCCAAGG
* ** ** * * ** *
20825229 TTCTCGCACGTCCAAGCACCAAGG-TGTCGATGGTGATCGAGG
1 CTCTCGCACAACCAAGGGCCTAGGTTGCCGATGGTGCCCAAGG
* * * * * *** *
20825271 CTCCCGCACGACCAAGGGCCTAGGTTACTGATAGTTTTCGAGG
1 CTCTCGCACAACCAAGGGCCTAGGTTGCCGATGGTGCCCAAGG
* * ** ** *
20825314 CTCTCGTAC-ATCATTGTACTGAGG-TGCCGATGGTGCCCGAGG
1 CTCTCGCACAACCAAGGGCCT-AGGTTGCCGATGGTGCCCAAGG
* * * ** *
20825356 CTCTTGCACGACCAAGGGCCTAGGTTGCTGACAGTGTCCAAGG
1 CTCTCGCACAACCAAGGGCCTAGGTTGCCGATGGTGCCCAAGG
* * * *** * *
20825399 CTCCCGTAC-ATCATAGCATCGAGG-TGCCGATGGTGCCCGAGG
1 CTCTCGCACAACCA-AGGGCCTAGGTTGCCGATGGTGCCCAAGG
* * * * * * * **
20825441 CT-TCCGAACGACCAAGGGCGTAGTTTGTCGATGTTGTCTGAGG
1 CTCT-CGCACAACCAAGGGCCTAGGTTGCCGATGGTGCCCAAGG
* * ** * * * **
20825484 CTCTCGCACATCCGAGCACCCAGG-TGTCGATGGTACCTGAGG
1 CTCTCGCACAACCAAGGGCCTAGGTTGCCGATGGTGCCCAAGG
* * * * * * *
20825526 CTTTCACACGACTAAAGGCCTAGGTAGCCGATGGTGCCCGAGG
1 CTCTCGCACAACCAAGGGCCTAGGTTGCCGATGGTGCCCAAGG
* * * * * **
20825569 CTCCCGCA-AGACTGAA-GGCCTAGTTTGCTGATGGTGTCTGAGG
1 CTCTCGCACA-AC-CAAGGGCCTAGGTTGCCGATGGTGCCCAAGG
* ** * * **
20825612 CT-TGCGCACATCCAAACGCCCAGG-TACCGATGGT-CCTGAGG
1 CTCT-CGCACAACCAAGGGCCTAGGTTGCCGATGGTGCCCAAGG
* * * *
20825653 CTCTCGTACGACCAAGGGACTAGGTTGCCGATGGTGCCCGAGG
1 CTCTCGCACAACCAAGGGCCTAGGTTGCCGATGGTGCCCAAGG
* * **
20825696 CTCTCGCACAACCAAGGG-CTGAGGTTGTCGATGGTGTCTGAGG
1 CTCTCGCACAACCAAGGGCCT-AGGTTGCCGATGGTGCCCAAGG
* * * ** *
20825739 CTCCCGCACATCCTAGTACCAAGG-TGCCGATGGTGCC
1 CTCTCGCACAACCAAGGGCCTAGGTTGCCGATGGTGCC
20825776 TGAGGACCCC
Statistics
Matches: 1134, Mismatches: 421, Indels: 113
0.68 0.25 0.07
Matches are distributed among these distances:
41 33 0.03
42 452 0.40
43 633 0.56
44 16 0.01
ACGTcount: A:0.20, C:0.30, G:0.30, T:0.20
Consensus pattern (43 bp):
CTCTCGCACAACCAAGGGCCTAGGTTGCCGATGGTGCCCAAGG
Found at i:20824535 original size:128 final size:128
Alignment explanation
Indices: 20824356--20825136 Score: 653
Period size: 128 Copynumber: 6.1 Consensus size: 128
20824346 CATAGCACCA
* * * * *
20824356 AGGT-GCCGATGGTGCCCGAGGCTCCCACACGACCAAAGGCATAGTTTGCCGATGGCGTCCGAGG
1 AGGTAGCCGATGGTGCCCGAGGCTCCCGCAAGACCAAGGGCCTAGTTTGCCGATGGTGTCCGAGG
* * * * * *
20824420 CTCCCCCACATCCGAGCGCCCAGGTACCGATGATGCCCGAGGCTTTCACACGAATAAGGGCCT
66 CTCCCGCACATCCGAGCACCCAGGTACCGATGGTGCCCGAGGCTCTCGCACGAACAAGGGCCT
* * ** * * *
20824483 AGGTAGCCCATGGTGCCTGAGGCTTTCGCAAGACCAAGGGTCTAGTTTGCCGATGGCGTCCAAGG
1 AGGTAGCCGATGGTGCCCGAGGCTCCCGCAAGACCAAGGGCCTAGTTTGCCGATGGTGTCCGAGG
* ** * ** *
20824548 CTCTCGCACATCCGAGCGGCCAAGTGTCGATGTTGCCCGAGGCTCTCGCAC-AACCAAGGGCCT
66 CTCCCGCACATCCGAGCACCCAGGTACCGATGGTGCCCGAGGCTCTCGCACGAA-CAAGGGCCT
* * * * * * ** *
20824611 AGGTTGCCGATGGTGCCCAAGGCTCTCGTACGACCAAGGGCCTAGGTTGTTGATGGTGTCCAAGG
1 AGGTAGCCGATGGTGCCCGAGGCTCCCGCAAGACCAAGGGCCTAGTTTGCCGATGGTGTCCGAGG
* * ** * * ** * ** *
20824676 CTCCCGCACATCCTAGCACCAAGGTGTCGATGGTGCTCAAGGCTCTTACAC-ATCATAGCACCG
66 CTCCCGCACATCCGAGCACCCAGGTACCGATGGTGCCCGAGGCTCTCGCACGAACA-AGGGCCT
* * * * * *
20824739 AGGT-GCCGGTTGTGGCCGAGGCTCCCGCACGACCAAGGGCCTAGTTTACCGATAGTGTCCGAGG
1 AGGTAGCCGATGGTGCCCGAGGCTCCCGCAAGACCAAGGGCCTAGTTTGCCGATGGTGTCCGAGG
* * * * * * * *
20824803 CTTCTGCACATCCGAGCACCCA-GAAGCCGATGGTGCCTGATGCTTTCGTACGACCAAGGGCCT
66 CTCCCGCACATCCGAGCACCCAGGTA-CCGATGGTGCCCGAGGCTCTCGCACGAACAAGGGCCT
* * * * * * *
20824866 AGGTAGCCGATGGTACCCGAGGCTCCCCCAAAATCAAGGGCCTAGTTTGCCGAAGGTGTCTGAGT
1 AGGTAGCCGATGGTGCCCGAGGCTCCCGCAAGACCAAGGGCCTAGTTTGCCGATGGTGTCCGAGG
* * * ** * * *
20824931 CTCCCGTACATCTGAGCACCTAGGTGTCAATGGTGTCCGAGGCTCTCGCACGACCAAGGGCCT
66 CTCCCGCACATCCGAGCACCCAGGTACCGATGGTGCCCGAGGCTCTCGCACGAACAAGGGCCT
* * * ** *
20824994 AGGTTGCCGATGGT-CCTCGAGGCTCCCACACA-ACCAAGGACCTAGTTTGCCGATAATGTCTGA
1 AGGTAGCCGATGGTGCC-CGAGGCTCCCGCA-AGACCAAGGGCCTAGTTTGCCGATGGTGTCCGA
* * * * *
20825057 GGCTCCCGTACATCC-AGGCGCCTAGGTACCGATGGTGCCCGAGGCTCTCGCACGACCAAAGGCC
64 GGCTCCCGCACATCCGA-GCACCCAGGTACCGATGGTGCCCGAGGCTCTCGCACGAACAAGGGCC
20825121 T
128 T
*
20825122 AGTTTA-CCGATGGTG
1 AG-GTAGCCGATGGTG
20825137 TCTGGGGCTT
Statistics
Matches: 520, Mismatches: 122, Indels: 22
0.78 0.18 0.03
Matches are distributed among these distances:
126 1 0.00
127 101 0.19
128 415 0.80
129 3 0.01
ACGTcount: A:0.20, C:0.31, G:0.29, T:0.20
Consensus pattern (128 bp):
AGGTAGCCGATGGTGCCCGAGGCTCCCGCAAGACCAAGGGCCTAGTTTGCCGATGGTGTCCGAGG
CTCCCGCACATCCGAGCACCCAGGTACCGATGGTGCCCGAGGCTCTCGCACGAACAAGGGCCT
Found at i:20825062 original size:383 final size:383
Alignment explanation
Indices: 20824341--20825071 Score: 883
Period size: 383 Copynumber: 1.9 Consensus size: 383
20824331 GAGGCTCCCG
*
20824341 CACATCATAGCACCAAGGTGCCGATGGTGCCCGAGGCTCCCACACGACCAAAGGCATAGTTTGCC
1 CACATCATAGCACCAAGGTGCCGATGGTGCCCGAGGCTCCCACACGACCAAAGGCATAGTTTACC
* * *
20824406 GATGGCGTCCGAGGCTCCCCCACATCCGAGCGCCCAGGTACCGATGATGCCCGAGGCTTTCACAC
66 GATAGCGTCCGAGGCTCCCCCACATCCGAGCACCCAGGAACCGATGATGCCCGAGGCTTTCACAC
* * * ** * * *
20824471 GAATAAGGGCCTAGGTAGCCCATGGTGCCTGAGGCTTTCGCAAGACCAAGGGTCTAGTTTGCCGA
131 GAACAAGGGCCTAGGTAGCCCATGGTACCCGAGGCTCCCCCAAAACCAAGGGCCTAGTTTGCCGA
* * * * *
20824536 TGGCGTCCAAGGCTCTCGCACATCCGAGCGGCCAAGTGTCGATGTTGCCCGAGGCTCTCGCACAA
196 AGGCGTCCAAGGCTCCCGCACATCCGAGCGACCAAGTGTCAATGGTGCCCGAGGCTCTCGCACAA
* ** * * ** *
20824601 CCAAGGGCCTAGGTTGCCGATGGTGCCCAAGGCTCTCGTACGACCAAGGGCCTAGGTTGTTGATG
261 CCAAGGGCCTAGGTTGCCGATGGTGCCCAAGGCTCCCACACAACCAAGGACCTAGGTTGCCGATA
*
20824666 GTGTCCAAGGCTCCCGCACATCCTAGCACCAAGGTGTCGATGGTGCTCAAGGCTCTTA
326 ATGTCCAAGGCTCCCGCACATCCTAGCACCAAGGTGTCGATGGTGCTCAAGGCTCTTA
* * * * * * *
20824724 CACATCATAGCACCGAGGTGCCGGTTGTGGCCGAGGCTCCCGCACGACCAAGGGCCTAGTTTACC
1 CACATCATAGCACCAAGGTGCCGATGGTGCCCGAGGCTCCCACACGACCAAAGGCATAGTTTACC
* * ** * * * **
20824789 GATAGTGTCCGAGGCTTCTGCACATCCGAGCACCCA-GAAGCCGATGGTGCCTGATGCTTTCGTA
66 GATAGCGTCCGAGGCTCCCCCACATCCGAGCACCCAGGAA-CCGATGATGCCCGAGGCTTTCACA
* * *
20824853 CGACCAAGGGCCTAGGTAGCCGATGGTACCCGAGGCTCCCCCAAAATCAAGGGCCTAGTTTGCCG
130 CGAACAAGGGCCTAGGTAGCCCATGGTACCCGAGGCTCCCCCAAAACCAAGGGCCTAGTTTGCCG
* ** * * * * *
20824918 AAGGTGTCTGAGTCTCCCGTACATCTGAGC-ACCTAGGTGTCAATGGTGTCCGAGGCTCTCGCAC
195 AAGGCGTCCAAGGCTCCCGCACATCCGAGCGACC-AAGTGTCAATGGTGCCCGAGGCTCTCGCAC
* * *
20824982 GACCAAGGGCCTAGGTTGCCGATGGT-CCTCGAGGCTCCCACACAACCAAGGACCTAGTTTGCCG
259 AACCAAGGGCCTAGGTTGCCGATGGTGCC-CAAGGCTCCCACACAACCAAGGACCTAGGTTGCCG
** *
20825046 ATAATGTCTGAGGCTCCCGTACATCC
323 ATAATGTCCAAGGCTCCCGCACATCC
20825072 AGGCGCCTAG
Statistics
Matches: 286, Mismatches: 59, Indels: 6
0.81 0.17 0.02
Matches are distributed among these distances:
382 6 0.02
383 280 0.98
ACGTcount: A:0.21, C:0.31, G:0.28, T:0.20
Consensus pattern (383 bp):
CACATCATAGCACCAAGGTGCCGATGGTGCCCGAGGCTCCCACACGACCAAAGGCATAGTTTACC
GATAGCGTCCGAGGCTCCCCCACATCCGAGCACCCAGGAACCGATGATGCCCGAGGCTTTCACAC
GAACAAGGGCCTAGGTAGCCCATGGTACCCGAGGCTCCCCCAAAACCAAGGGCCTAGTTTGCCGA
AGGCGTCCAAGGCTCCCGCACATCCGAGCGACCAAGTGTCAATGGTGCCCGAGGCTCTCGCACAA
CCAAGGGCCTAGGTTGCCGATGGTGCCCAAGGCTCCCACACAACCAAGGACCTAGGTTGCCGATA
ATGTCCAAGGCTCCCGCACATCCTAGCACCAAGGTGTCGATGGTGCTCAAGGCTCTTA
Found at i:20825115 original size:85 final size:85
Alignment explanation
Indices: 20824479--20825802 Score: 541
Period size: 85 Copynumber: 15.6 Consensus size: 85
20824469 ACGAATAAGG
* * * * * * * *
20824479 GCCTAGGTAGCCCATGGTGCCTGAGGCTTTCGCAAGACCAAGGGTCTAGTTTGCCGATGGCGTCC
1 GCCTAGGT-GCCGATGGTGCCCGAGGCTCTCGCACGACCAAGGGCCTAGTTTGCCGATAGTGTCT
* * *
20824544 AAGGCTCTCGCACATCCGAGC
65 GAGGCTCCCGCACATCCAAGC
* * * * * * * *
20824565 GGCC-AAGTGTCGATGTTGCCCGAGGCTCTCGCACAACCAAGGGCCTAGGTTGCCGATGGTGCCC
1 -GCCTAGGTGCCGATGGTGCCCGAGGCTCTCGCACGACCAAGGGCCTAGTTTGCCGATAGTGTCT
* * * *
20824629 AAGGCTCTCGTACGA-CCAAGG
65 GAGGCTCCCGCAC-ATCCAAGC
** * * * * ** * * * *
20824650 GCCTAGGTTGTTGATGGTGTCCAAGGCTCCCGCAC-ATCCTAGCACCAAG-GTGTCGATGGTG-C
1 GCCTAGG-TGCCGATGGTGCCCGAGGCTCTCGCACGA-CCAAGGGCCTAGTTTGCCGATAGTGTC
* ***
20824712 TCAAGGCTCTTACACAT-CATAGC
64 T-GAGGCTCCCGCACATCCA-AGC
* * * * * * * *
20824735 ACCGAGGTGCCGGTTGTGGCCGAGGCTCCCGCACGACCAAGGGCCTAGTTTACCGATAGTGTCCG
1 GCCTAGGTGCCGATGGTGCCCGAGGCTCTCGCACGACCAAGGGCCTAGTTTGCCGATAGTGTCTG
* * *
20824800 AGGCTTCTGCACATCCGAGC
66 AGGCTCCCGCACATCCAAGC
* * ** * * * * * * * ** *
20824820 ACCCAGAAGCCGATGGTGCCTGATGCTTTCGTACGACCAAGGGCCTAGGTAGCCGATGGTACCCG
1 GCCTAGGTGCCGATGGTGCCCGAGGCTCTCGCACGACCAAGGGCCTAGTTTGCCGATAGTGTCTG
* * *
20824885 AGGCTCCCCCAAAAT-CAAGG
66 AGGCTCCCGC-ACATCCAAGC
* * * * * * * ** ** * * * *
20824905 GCCTAGTTTGCCGAAGGTGTCTGAGTCTCCCGTAC-ATCTGAGCACCTAG-GTGTCAATGGTGTC
1 GCCTAG-GTGCCGATGGTGCCCGAGGCTCTCGCACGA-CCAAGGGCCTAGTTTGCCGATAGTGTC
* * *
20824968 CGAGGCTCTCGCACGA-CCAAGG
64 TGAGGCTCCCGCAC-ATCCAAGC
* * * * *
20824990 GCCTAGGTTGCCGATGGT-CCTCGAGGCTCCCACACAACCAAGGACCTAGTTTGCCGATAATGTC
1 GCCTAGG-TGCCGATGGTGCC-CGAGGCTCTCGCACGACCAAGGGCCTAGTTTGCCGATAGTGTC
* *
20825054 TGAGGCTCCCGTACATCCAGGC
64 TGAGGCTCCCGCACATCCAAGC
* * * *
20825076 GCCTAGGTACCGATGGTGCCCGAGGCTCTCGCACGACCAAAGGCCTAGTTTACCGATGGTGTCTG
1 GCCTAGGTGCCGATGGTGCCCGAGGCTCTCGCACGACCAAGGGCCTAGTTTGCCGATAGTGTCTG
* *
20825141 GGGCTTCCGCACATCCGAA-C
66 AGGCTCCCGCACATCC-AAGC
* * * * * *
20825161 GCCCAGGTGCCGATGGTGCCCTAGGCACTCACACGACGAAGGGCCTATGTTAT--CGATGGTGTC
1 GCCTAGGTGCCGATGGTGCCCGAGGCTCTCGCACGACCAAGGGCCTA-GTT-TGCCGATAGTGT-
* * *
20825224 CT-AGGTTCTCGCACGTCCAAGC
63 CTGAGGCTCCCGCACATCCAAGC
* * * ** * * * * *
20825246 ACCAAGGTGTCGATGGTGATCGAGGCTCCCGCACGACCAAGGGCCTAGGTTACTGATAGT-TTTC
1 GCCTAGGTGCCGATGGTGCCCGAGGCTCTCGCACGACCAAGGGCCTAGTTTGCCGATAGTGTCT-
* * *
20825310 GAGGCTCTCGTACAT-CATTG-
65 GAGGCTCCCGCACATCCA-AGC
** * * * * *
20825330 TACTGAGGTGCCGATGGTGCCCGAGGCTCTTGCACGACCAAGGGCCTAGGTTGCTGACAGTGTCC
1 GCCT-AGGTGCCGATGGTGCCCGAGGCTCTCGCACGACCAAGGGCCTAGTTTGCCGATAGTGTCT
* *
20825395 AAGGCTCCCGTACAT-CATAGC
65 GAGGCTCCCGCACATCCA-AGC
** * * * *
20825416 ATCGAGGTGCCGATGGTGCCCGAGGCT-TCCGAACGACCAAGGGCGTAGTTTGTCGAT-GTTGTC
1 GCCTAGGTGCCGATGGTGCCCGAGGCTCT-CGCACGACCAAGGGCCTAGTTTGCCGATAG-TGTC
* *
20825479 TGAGGCTCTCGCACATCCGAGC
64 TGAGGCTCCCGCACATCCAAGC
* * * * * * * * * * * * * *
20825501 ACCCAGGTGTCGATGGTACCTGAGGCTTTCACACGACTAAAGGCCTAGGTAGCCGATGGTGCCCG
1 GCCTAGGTGCCGATGGTGCCCGAGGCTCTCGCACGACCAAGGGCCTAGTTTGCCGATAGTGTCTG
* *
20825566 AGGCTCCCGCA-AGACTGAAG-
66 AGGCTCCCGCACA-TC-CAAGC
* * * * ** * * *
20825586 GCCTAGTTTGCTGATGGTGTCTGAGGCT-TGCGCAC-ATCCAAACGCCCAG-GTACCGAT-G-GT
1 GCCTAG-GTGCCGATGGTGCCCGAGGCTCT-CGCACGA-CCAAGGGCCTAGTTTGCCGATAGTGT
* * *
20825646 CCTGAGGCTCTCGTACGA-CCAAGG
63 -CTGAGGCTCCCGCAC-ATCCAAGC
* * * * *
20825670 GACTAGGTTGCCGATGGTGCCCGAGGCTCTCGCACAACCAAGGG-CTGAGGTTGTCGATGGTGTC
1 GCCTAGG-TGCCGATGGTGCCCGAGGCTCTCGCACGACCAAGGGCCT-AGTTTGCCGATAGTGTC
* *
20825734 TGAGGCTCCCGCACATCCTAGT
64 TGAGGCTCCCGCACATCCAAGC
* * * * *
20825756 ACCAAGGTGCCGATGGTGCCTGAGGAC-CCCACACGACCAAGGGCCTA
1 GCCTAGGTGCCGATGGTGCCCGAGG-CTCTCGCACGACCAAGGGCCTA
20825803 TGCTACTGGA
Statistics
Matches: 925, Mismatches: 253, Indels: 120
0.71 0.19 0.09
Matches are distributed among these distances:
83 7 0.01
84 96 0.10
85 647 0.70
86 169 0.18
87 6 0.01
ACGTcount: A:0.20, C:0.30, G:0.30, T:0.21
Consensus pattern (85 bp):
GCCTAGGTGCCGATGGTGCCCGAGGCTCTCGCACGACCAAGGGCCTAGTTTGCCGATAGTGTCTG
AGGCTCCCGCACATCCAAGC
Found at i:20825729 original size:127 final size:127
Alignment explanation
Indices: 20825423--20825795 Score: 373
Period size: 127 Copynumber: 2.9 Consensus size: 127
20825413 AGCATCGAGG
* * *
20825423 TGCCGATGGTGCCCGAGGCT-TCCGAACGACCAAGGGC-GTAGTTTGTCGATGTTGTCTGAGGCT
1 TGCCGATGGTGCCCGAGGCTCT-CGCACAACCAAGGGCTG-AGTTTGTCGATGGTGTCTGAGGCT
* * ** * * *
20825486 CTCGCACATCCGAGCACCCAGGTGTCGATGGTACCTGAGGCTTTCACACGACTAAAGGCCTAGGT
64 -TCGCACATCCAAACACCCAGGTACCGATGGTACCTGAGGCTCTCACACGACCAAAGGACTAGGT
* * * *
20825551 AGCCGATGGTGCCCGAGGCTCCCGCA-AGACTGAAGGCCT-AGTTTG-CTGATGGTGTCTGAGGC
1 TGCCGATGGTGCCCGAGGCTCTCGCACA-AC-CAAGGGCTGAGTTTGTC-GATGGTGTCTGAGGC
* ** *
20825613 TTGCGCACATCCAAACGCCCAGGTACCGATGGT-CCTGAGGCTCTCGTACGACCAAGGGACTAGG
63 TT-CGCACATCCAAACACCCAGGTACCGATGGTACCTGAGGCTCTCACACGACCAAAGGACTAGG
20825677 T
127 T
* *
20825678 TGCCGATGGTGCCCGAGGCTCTCGCACAACCAAGGGCTGAGGTTGTCGATGGTGTCTGAGGCTCC
1 TGCCGATGGTGCCCGAGGCTCTCGCACAACCAAGGGCTGAGTTTGTCGATGGTGTCTGAGGCT-T
* ** * * * *
20825743 CGCACATCCTAGTACCAAGGTGCCGATGGTGCCTGAGGAC-CCCACACGACCAA
65 CGCACATCCAAACACCCAGGTACCGATGGTACCTGAGG-CTCTCACACGACCAA
20825796 GGGCCTATGC
Statistics
Matches: 200, Mismatches: 33, Indels: 24
0.78 0.13 0.09
Matches are distributed among these distances:
126 6 0.03
127 99 0.50
128 89 0.44
129 6 0.03
ACGTcount: A:0.20, C:0.29, G:0.31, T:0.20
Consensus pattern (127 bp):
TGCCGATGGTGCCCGAGGCTCTCGCACAACCAAGGGCTGAGTTTGTCGATGGTGTCTGAGGCTTC
GCACATCCAAACACCCAGGTACCGATGGTACCTGAGGCTCTCACACGACCAAAGGACTAGGT
Found at i:20828245 original size:75 final size:75
Alignment explanation
Indices: 20828118--20828277 Score: 266
Period size: 75 Copynumber: 2.1 Consensus size: 75
20828108 GATGCAACAA
* *
20828118 GTCCCTCCCTAATCATAAAGGTAGAATTCCAATATCATTACATGTGACGTACCCAACAATGAACG
1 GTCCCTCCCCAATCATAAAGGTAGAATTCAAATATCATTACATGTGACGTACCCAACAATGAACG
*
20828183 AATCGTCCTG
66 AATCGTCCCG
* * *
20828193 GTCCCTCCCCAATCCTAAAGGTAGAATTCAAATATCGTTACATGTGATGTACCCAACAATGAACG
1 GTCCCTCCCCAATCATAAAGGTAGAATTCAAATATCATTACATGTGACGTACCCAACAATGAACG
20828258 AATCGTCCCG
66 AATCGTCCCG
20828268 GTCCCTCCCC
1 GTCCCTCCCC
20828278 TTGGTCATGC
Statistics
Matches: 79, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
75 79 1.00
ACGTcount: A:0.31, C:0.30, G:0.15, T:0.24
Consensus pattern (75 bp):
GTCCCTCCCCAATCATAAAGGTAGAATTCAAATATCATTACATGTGACGTACCCAACAATGAACG
AATCGTCCCG
Found at i:20828337 original size:43 final size:43
Alignment explanation
Indices: 20828275--20828360 Score: 127
Period size: 43 Copynumber: 2.0 Consensus size: 43
20828265 CCGGTCCCTC
* *
20828275 CCCTTGGTCATGCGTGAGCCTCGGGCACCATCGACAACCTAGG
1 CCCTTGGCCATGCGGGAGCCTCGGGCACCATCGACAACCTAGG
* **
20828318 CCCTTGGCCGTGCGGGAGCCTCGGGCACCATCGGTAACCTAGG
1 CCCTTGGCCATGCGGGAGCCTCGGGCACCATCGACAACCTAGG
20828361 TGCTTCATCG
Statistics
Matches: 38, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
43 38 1.00
ACGTcount: A:0.16, C:0.35, G:0.31, T:0.17
Consensus pattern (43 bp):
CCCTTGGCCATGCGGGAGCCTCGGGCACCATCGACAACCTAGG
Found at i:20839103 original size:7 final size:6
Alignment explanation
Indices: 20839100--20839140 Score: 55
Period size: 6 Copynumber: 6.5 Consensus size: 6
20839090 ATAAAAAATG
*
20839100 AAAAGA GAAAAGA AAAAGA AAAAGGA AAAGGA AAAAGA AAA
1 AAAAGA -AAAAGA AAAAGA AAAA-GA AAAAGA AAAAGA AAA
20839141 GGAGATGCCA
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
6 20 0.65
7 11 0.35
ACGTcount: A:0.78, C:0.00, G:0.22, T:0.00
Consensus pattern (6 bp):
AAAAGA
Found at i:20839141 original size:12 final size:13
Alignment explanation
Indices: 20839093--20839143 Score: 54
Period size: 12 Copynumber: 4.1 Consensus size: 13
20839083 AGTCAAAATA
*
20839093 AAAAATGAAAA-G
1 AAAAAGGAAAAGG
*
20839105 AGAAAA-GAAAAAG
1 A-AAAAGGAAAAGG
20839118 AAAAAGGAAAAGG
1 AAAAAGGAAAAGG
20839131 AAAAA-GAAAAGG
1 AAAAAGGAAAAGG
20839143 A
1 A
20839144 GATGCCAAGG
Statistics
Matches: 35, Mismatches: 1, Indels: 6
0.83 0.02 0.14
Matches are distributed among these distances:
12 18 0.51
13 17 0.49
ACGTcount: A:0.75, C:0.00, G:0.24, T:0.02
Consensus pattern (13 bp):
AAAAAGGAAAAGG
Found at i:20839142 original size:18 final size:17
Alignment explanation
Indices: 20839093--20839143 Score: 66
Period size: 19 Copynumber: 2.8 Consensus size: 17
20839083 AGTCAAAATA
20839093 AAAAATGAAAAGAGAAAAG
1 AAAAA-GAAAAG-GAAAAG
20839112 AAAAAGAAAAAGGAAAAGG
1 AAAAAG-AAAAGGAAAA-G
20839131 AAAAAGAAAAGGA
1 AAAAAGAAAAGGA
20839144 GATGCCAAGG
Statistics
Matches: 30, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
18 13 0.43
19 17 0.57
ACGTcount: A:0.75, C:0.00, G:0.24, T:0.02
Consensus pattern (17 bp):
AAAAAGAAAAGGAAAAG
Found at i:20840897 original size:87 final size:87
Alignment explanation
Indices: 20840735--20841234 Score: 750
Period size: 87 Copynumber: 5.7 Consensus size: 87
20840725 TCAGTCAATG
** * * *
20840735 TCGAAAATGAAGCCTTGCCTCCATCGGTTGTAGTGGAGCTGGTTGAAGATAGCAGATCTTGCCTT
1 TCGAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATAACAGATCTTGCCTT
* * *
20840800 CTTGCATTAACAGTGAAGCAGA
66 CCTGCGTTAACAGCGAAGCAGA
* *
20840822 TCGGAAACGAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATAACAGATCTTGCCTT
1 TCGAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATAACAGATCTTGCCTT
**
20840887 CCTATGTTAACAGCGAAGCAGA
66 CCTGCGTTAACAGCGAAGCAGA
* * * * *
20840909 CCGAAAACAAAGCCTTGCCTCCATCGGTTGTAGTGGAGCTGGTTGAGGATAGCAGATCTTGCCTT
1 TCGAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATAACAGATCTTGCCTT
*
20840974 CCTGCATTAACAGCGAAGCAGA
66 CCTGCGTTAACAGCGAAGCAGA
* ** *
20840996 TCGAAGATGAAGCCTTGCCTCCATCGGTTGCAATGGAGCTGGTTAAAGATAACAGATCTTGCCTT
1 TCGAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATAACAGATCTTGCCTT
20841061 CCTGCGTTAACAGCGAAGCAGA
66 CCTGCGTTAACAGCGAAGCAGA
* *
20841083 CCTAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATAACAGATCTTGCCTT
1 TCGAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATAACAGATCTTGCCTT
20841148 CCTGCGTTAACAGCGAAGCAGA
66 CCTGCGTTAACAGCGAAGCAGA
* *
20841170 TCGAAAACAAAGCCTTACCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATAGA-AGATATTGCCT
1 TCGAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATA-ACAGATCTTGCCT
20841234 T
65 T
20841235 TCTAAGCACT
Statistics
Matches: 372, Mismatches: 40, Indels: 2
0.90 0.10 0.00
Matches are distributed among these distances:
87 371 1.00
88 1 0.00
ACGTcount: A:0.28, C:0.23, G:0.25, T:0.25
Consensus pattern (87 bp):
TCGAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATAACAGATCTTGCCTT
CCTGCGTTAACAGCGAAGCAGA
Found at i:20841465 original size:43 final size:42
Alignment explanation
Indices: 20841356--20841471 Score: 117
Period size: 43 Copynumber: 2.7 Consensus size: 42
20841346 AAATAGCAAG
* *
20841356 TCTTATCTCCCTAAGCAGTAGTGGAGCAGACAGAAGAATCAA
1 TCTTATCTCCCTAAGCAGTAGTGGAGCAGACAAAACAATCAA
* ** * ** *
20841398 TCCTATCTCCCTGAAGTTGCAGTGGAGTGGATTAAAACAAT-AGA
1 TCTTATCTCCCT-AAGCAGTAGTGGAGCAGA-CAAAACAATCA-A
20841442 TCTTATCTCCCTAAGCAGTAGTGGAGCAGA
1 TCTTATCTCCCTAAGCAGTAGTGGAGCAGA
20841472 TCGTATCGGG
Statistics
Matches: 56, Mismatches: 15, Indels: 5
0.74 0.20 0.07
Matches are distributed among these distances:
42 11 0.20
43 27 0.48
44 18 0.32
ACGTcount: A:0.32, C:0.21, G:0.22, T:0.25
Consensus pattern (42 bp):
TCTTATCTCCCTAAGCAGTAGTGGAGCAGACAAAACAATCAA
Found at i:20841533 original size:44 final size:45
Alignment explanation
Indices: 20841481--20841587 Score: 130
Period size: 44 Copynumber: 2.4 Consensus size: 45
20841471 ATCGTATCGG
*
20841481 GTCTTATCTCCCTGAAGTTC-CAGCGGAGCAGACTG-AGAAAGCGA
1 GTCTTATCTCCCTGAAGTTCACAGCGGAGCAGACTGAAG-AAGCAA
* * *
20841525 GTCTTATCTCCTTGAAG-TCACAGTGGGGCAGACTGAAGAAGCAA
1 GTCTTATCTCCCTGAAGTTCACAGCGGAGCAGACTGAAGAAGCAA
* *
20841569 ATCCTATCTCCCTGAAGTT
1 GTCTTATCTCCCTGAAGTT
20841588 GTAGTGGAGC
Statistics
Matches: 53, Mismatches: 7, Indels: 5
0.82 0.11 0.08
Matches are distributed among these distances:
43 2 0.04
44 48 0.91
45 3 0.06
ACGTcount: A:0.27, C:0.24, G:0.24, T:0.24
Consensus pattern (45 bp):
GTCTTATCTCCCTGAAGTTCACAGCGGAGCAGACTGAAGAAGCAA
Found at i:20846693 original size:42 final size:40
Alignment explanation
Indices: 20846634--20846782 Score: 138
Period size: 42 Copynumber: 3.5 Consensus size: 40
20846624 TGGTCATGCA
* *
20846634 GGAGCCTCGGGCACCATCGGCACCTTGGTGCTAAGATGTGTG
1 GGAGCCTCGGACACCATCGGCACCTAGGTGCT-AGATGTG-G
* ** * *
20846676 GGAGCCTCAGACACCATCGGCAACCTAGGCCCTTGGTCGTGG
1 GGAGCCTCGGACACCATCGGC-ACCTAGGTGCTAGAT-GTGG
* *
20846718 GAGAGCGTC-GAGCACCATCGGCACCTAGGTGCTTGGATGTGCG
1 G-GAGCCTCGGA-CACCATCGGCACCTAGGTGC-TAGATGTG-G
20846761 GGAGCCTCGGACACCATCGGCA
1 GGAGCCTCGGACACCATCGGCA
20846783 AACTAGGCCC
Statistics
Matches: 87, Mismatches: 13, Indels: 14
0.76 0.11 0.12
Matches are distributed among these distances:
42 53 0.61
43 34 0.39
ACGTcount: A:0.19, C:0.30, G:0.34, T:0.17
Consensus pattern (40 bp):
GGAGCCTCGGACACCATCGGCACCTAGGTGCTAGATGTGG
Found at i:20846739 original size:43 final size:43
Alignment explanation
Indices: 20846616--20847338 Score: 493
Period size: 43 Copynumber: 16.9 Consensus size: 43
20846606 TCCGGTAGCA
* *
20846616 TAGGCCCTTGGTCAT-GCAGGAGCCTCGGGCACCATCGGC-ACC
1 TAGGCCCTTGGTCGTGGGA-GAGCCTCGGGCACCATCGGCAACC
* ** * * * *
20846658 TTGGTGCTAAGAT-GTGTGG-GAGCCTCAGACACCATCGGCAACC
1 TAGGCCCT-TGGTCGTG-GGAGAGCCTCGGGCACCATCGGCAACC
* *
20846701 TAGGCCCTTGGTCGTGGGAGAGCGTCGAGCACCATCGGC-ACC
1 TAGGCCCTTGGTCGTGGGAGAGCCTCGGGCACCATCGGCAACC
** * *
20846743 TAGGTGCTTGGAT-GTGCGG-GAGCCTCGGACACCATCGGCAAAC
1 TAGGCCCTTGG-TCGTG-GGAGAGCCTCGGGCACCATCGGCAACC
* * * **
20846786 TAGGCCCTTGGTCGTACGGA-ACCCTCGGACACCATCGATAACC
1 TAGGCCCTTGGTCGT-GGGAGAGCCTCGGGCACCATCGGCAACC
* * *
20846829 TAGGCCGTTAGTCGTGCGAGAGCCTCGGGCACCATCGGC-ACC
1 TAGGCCCTTGGTCGTGGGAGAGCCTCGGGCACCATCGGCAACC
* * * * * * * *
20846871 TGGGCGCTCGGGT-GTACGG-GAGCCTCAGACACTATCGGCAAAC
1 TAGGCCCT-TGGTCGT-GGGAGAGCCTCGGGCACCATCGGCAACC
* *
20846914 TAGGCCCTTGGTCTTGTGAGAGCCTCGGGCACCATCGGTC-ACC
1 TAGGCCCTTGGTCGTGGGAGAGCCTCGGGCACCATCGG-CAACC
* * *
20846957 TAGGCCCTTGGTCGTGTGAAAGCCTCGAGCACCATCGGC-ACC
1 TAGGCCCTTGGTCGTGGGAGAGCCTCGGGCACCATCGGCAACC
* * * * ** *
20846999 TGGGCGCTCGAAT-GTGCGG-GAGCCTCGAACACCATCAGG-AAAC
1 TAGGCCCTTG-GTCGTG-GGAGAGCCTCGGGCACCATC-GGCAACC
20847042 TAGGCCCTTGGTCGTGCGG-GAGCCTCGGGCACCATCGGC-ACC
1 TAGGCCCTTGGTCGTG-GGAGAGCCTCGGGCACCATCGGCAACC
* ** * * * * *
20847084 TCGGTACTAT-GACGT-GCAGGAGCCTTGGACACTATCGGCAACC
1 TAGGCCCT-TGGTCGTGGGA-GAGCCTCGGGCACCATCGGCAACC
* * *** *
20847127 TAGGCCCTTGGTCGTGCGAGAGCCTCGGACACCATCAAAAAAC
1 TAGGCCCTTGGTCGTGGGAGAGCCTCGGGCACCATCGGCAACC
* ** * *
20847170 TAAGCCCTTGGTCGT-ACAGGAGCCCCGGGCACCATCGGCAACA
1 TAGGCCCTTGGTCGTGGGA-GAGCCTCGGGCACCATCGGCAACC
*
20847213 TAGGCCCTTGGTCGTGTGG-GAGCCTCGGGCACCATCGGCAACA
1 TAGGCCCTTGGTCGTG-GGAGAGCCTCGGGCACCATCGGCAACC
* * * *
20847256 TAGGCCCTTGGTCGTGTGG-GAGCCTCGGGAACTATCGACAACA
1 TAGGCCCTTGGTCGTG-GGAGAGCCTCGGGCACCATCGGCAACC
* * *
20847299 TAGGCCCTTGGTCGTGCGAGAGCCTCGAGTACCATCGGCA
1 TAGGCCCTTGGTCGTGGGAGAGCCTCGGGCACCATCGGCA
20847339 CCTGGGTGCT
Statistics
Matches: 526, Mismatches: 120, Indels: 69
0.74 0.17 0.10
Matches are distributed among these distances:
40 1 0.00
42 157 0.30
43 365 0.69
44 3 0.01
ACGTcount: A:0.20, C:0.31, G:0.31, T:0.18
Consensus pattern (43 bp):
TAGGCCCTTGGTCGTGGGAGAGCCTCGGGCACCATCGGCAACC
Found at i:20846764 original size:85 final size:85
Alignment explanation
Indices: 20846616--20847341 Score: 550
Period size: 85 Copynumber: 8.5 Consensus size: 85
20846606 TCCGGTAGCA
* * * * ** * * *
20846616 TAGGCCCTTGGTCAT-GCAGGAGCCTCGGGCACCATCGGCACCTTGGTGCTAAGAT-GTGTGGGA
1 TAGGCCCTTGGTCGTGGGA-GAGCCTCGAGCACCATCGGCACCTAGGCCCT-TGGTCGTGCGGGA
*
20846679 GCCTCAGACACCATCGGCAACC
64 GCCTCGGACACCATCGGCAACC
* **
20846701 TAGGCCCTTGGTCGTGGGAGAGCGTCGAGCACCATCGGCACCTAGGTGCTTGGAT-GTGCGGGAG
1 TAGGCCCTTGGTCGTGGGAGAGCCTCGAGCACCATCGGCACCTAGGCCCTTGG-TCGTGCGGGAG
*
20846765 CCTCGGACACCATCGGCAAAC
65 CCTCGGACACCATCGGCAACC
* * ** * * *
20846786 TAGGCCCTTGGTCGTACGGA-ACCCTCG-GACACCATCGATAACCTAGGCCGTTAGTCGTGCGAG
1 TAGGCCCTTGGTCGT-GGGAGAGCCTCGAG-CACCATCG-GCACCTAGGCCCTTGGTCGTGCGGG
*
20846849 AGCCTCGGGCACCATCGGC-ACC
63 AGCCTCGGACACCATCGGCAACC
* * * * * * * * *
20846871 TGGGCGCTCGGGT-GTACGG-GAGCCTC-AGACACTATCGGCAAACTAGGCCCTTGGTCTTGTGA
1 TAGGCCCT-TGGTCGT-GGGAGAGCCTCGAG-CACCATCGGC-ACCTAGGCCCTTGGTCGTGCGG
*
20846933 GAGCCTCGGGCACCATCGGTC-ACC
62 GAGCCTCGGACACCATCGG-CAACC
* * * * * *
20846957 TAGGCCCTTGGTCGTGTGAAAGCCTCGAGCACCATCGGCACCTGGGCGCTCGAAT-GTGCGGGAG
1 TAGGCCCTTGGTCGTGGGAGAGCCTCGAGCACCATCGGCACCTAGGCCCTTG-GTCGTGCGGGAG
* *
20847021 CCTCGAACACCATCAGG-AAAC
65 CCTCGGACACCATC-GGCAACC
* * ** * *
20847042 TAGGCCCTTGGTCGTGCGG-GAGCCTCGGGCACCATCGGCACCTCGGTACTAT-GACGTGCAGGA
1 TAGGCCCTTGGTCGTG-GGAGAGCCTCGAGCACCATCGGCACCTAGGCCCT-TGGTCGTGCGGGA
* *
20847105 GCCTTGGACACTATCGGCAACC
64 GCCTCGGACACCATCGGCAACC
* *** * * * *
20847127 TAGGCCCTTGGTCGTGCGAGAGCCTCG-GACACCATCAAAAAACTAAGCCCTTGGTCGTACAGGA
1 TAGGCCCTTGGTCGTGGGAGAGCCTCGAG-CACCATC-GGCACCTAGGCCCTTGGTCGTGCGGGA
* * *
20847191 GCCCCGGGCACCATCGGCAACA
64 GCCTCGGACACCATCGGCAACC
* * *
20847213 TAGGCCCTTGGTCGTGTGG-GAGCCTCGGGCACCATCGGCAACATAGGCCCTTGGTCGTGTGGGA
1 TAGGCCCTTGGTCGTG-GGAGAGCCTCGAGCACCATCGGC-ACCTAGGCCCTTGGTCGTGCGGGA
* * *
20847277 GCCTCGGGA-ACTATCGACAACA
64 GCCTC-GGACACCATCGGCAACC
* *
20847299 TAGGCCCTTGGTCGTGCGAGAGCCTCGAGTACCATCGGCACCT
1 TAGGCCCTTGGTCGTGGGAGAGCCTCGAGCACCATCGGCACCT
20847342 GGGTGCTCAG
Statistics
Matches: 511, Mismatches: 100, Indels: 60
0.76 0.15 0.09
Matches are distributed among these distances:
84 6 0.01
85 296 0.58
86 203 0.40
87 6 0.01
ACGTcount: A:0.20, C:0.31, G:0.31, T:0.18
Consensus pattern (85 bp):
TAGGCCCTTGGTCGTGGGAGAGCCTCGAGCACCATCGGCACCTAGGCCCTTGGTCGTGCGGGAGC
CTCGGACACCATCGGCAACC
Found at i:20846850 original size:128 final size:127
Alignment explanation
Indices: 20846687--20847313 Score: 601
Period size: 128 Copynumber: 4.9 Consensus size: 127
20846677 GAGCCTCAGA
* * *
20846687 CACCATCGGCAACCTAGGCCCTTGGTCGTGGGAGAGCGTCGAGCACCATCGGCACCTAGGTGCTT
1 CACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGAGCACCATCGGCACCTAGGCGCTT
*
20846752 GGATGTGCGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTCGTACGGAACCCTCGGA
66 GG-TGTGCGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTCGTACGGAACCCTCGGG
** * * * *
20846815 CACCATCGATAACCTAGGCCGTTAGTCGTGCGAGAGCCTCGGGCACCATCGGCACCTGGGCGCTC
1 CACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGAGCACCATCGGCACCTAGGCGCT-
* * * * * *
20846880 GGGTGTACGGGAGCCTCAGACACTATCGGCAAACTAGGCCCTTGGTC-T-TGTGAGAGCCTCGGG
65 TGGTGTGCGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTCGTACG-GA-ACCCTCGGG
* * *
20846943 CACCATCGGTC-ACCTAGGCCCTTGGTCGTGTGAAAGCCTCGAGCACCATCGGCACCTGGGCGCT
1 CACCATCGG-CAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGAGCACCATCGGCACCTAGGCGCT
* * * * * *
20847007 CGAATGTGCGGGAGCCTCGAACACCATCAGG-AAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGG
65 TG-GTGTGCGGGAGCCTCGGACACCATC-GGCAAACTAGGCCCTTGGTCGTACGGAACCCTCGGG
* ** * * *
20847071 CACCATCGGC-ACCTCGGTACTAT-GACGTGC-AGGAGCCTTG-GACACTATCGGCAACCTAGGC
1 CACCATCGGCAACCTAGGCCCT-TGGTCGTGCGA-GAGCCTCGAG-CACCATCGGC-ACCTAGGC
* * *** * *
20847132 CCTTGGTCGTGCGAGAGCCTCGGACACCATCAAAAAACTAAGCCCTTGGTCGTACAGGAGCCC-C
62 GCTTGGT-GTGCGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTCGTAC-GGAACCCTC
20847196 GGG
125 GGG
* * * * * *
20847199 CACCATCGGCAACATAGGCCCTTGGTCGTGTGGGAGCCTCGGGCACCATCGGCAACATAGGCCCT
1 CACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGAGCACCATCGGC-ACCTAGGCGCT
* * *
20847264 TGGTCGTGTGGGAGCCTCGGGA-ACTATCGAC-AACATAGGCCCTTGGTCGT
65 TGGT-GTGCGGGAGCCTC-GGACACCATCGGCAAAC-TAGGCCCTTGGTCGT
20847314 GCGAGAGCCT
Statistics
Matches: 410, Mismatches: 68, Indels: 41
0.79 0.13 0.08
Matches are distributed among these distances:
126 3 0.01
127 34 0.08
128 283 0.69
129 85 0.21
130 5 0.01
ACGTcount: A:0.20, C:0.31, G:0.31, T:0.18
Consensus pattern (127 bp):
CACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGAGCACCATCGGCACCTAGGCGCTT
GGTGTGCGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTCGTACGGAACCCTCGGG
Found at i:20847033 original size:213 final size:212
Alignment explanation
Indices: 20846616--20847162 Score: 611
Period size: 213 Copynumber: 2.6 Consensus size: 212
20846606 TCCGGTAGCA
* * * *
20846616 TAGGCCCTTGGTCATGC-AGGAGCCTCGGGCACCATCGGCACCTTGGTGCTAAGATGTGTGGGAG
1 TAGGCCCTTAGTCGTGCGA-GAGCCTCGGGCACCATCGGCACCTCGGTGCTAAGATGTGCGGGAG
* * * *
20846680 CCTCAGACACCATCGGCAACCTAGGCCCTTGGTCGTGGGAGAGCGTCGAGCACCATCGGCACCTA
65 CCTCAGACACTATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCACCTA
** ** * *
20846745 GGTGCTTGGATGTGCGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTCGTACGGAACCC
130 GGCCCTTGGATGTGCGAAAGCCTCGGACACCATCGGCAAACTAGGCCCTCGATCGTACGGAACCC
*
20846810 TCGGACACCATC-GATAACC
195 TCGAACACCATCAGA-AA-C
* * * ** * *
20846829 TAGGCCGTTAGTCGTGCGAGAGCCTCGGGCACCATCGGCACCTGGGCGCTCGGGTGTACGGGAGC
1 TAGGCCCTTAGTCGTGCGAGAGCCTCGGGCACCATCGGCACCTCGGTGCTAAGATGTGCGGGAGC
* * *
20846894 CTCAGACACTATCGGCAAACTAGGCCCTTGGTCTTGTGAGAGCCTCGGGCACCATCGGTCACCTA
66 CTCAGACACTATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGG-CACCTA
* * * * * *
20846959 GGCCCTTGG-TCGTGTGAAAGCCTC-GAGCACCATCGGC-ACCTGGGCGCTCGAAT-GTGCGGGA
130 GGCCCTTGGAT-GTGCGAAAGCCTCGGA-CACCATCGGCAAACTAGGCCCTCG-ATCGTACGGAA
*
20847020 GCCTCGAACACCATCAGGAAAC
192 CCCTCGAACACCATCA-GAAAC
* * * * * *
20847042 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTCGGTACTATGACGTGCAGGAGC
1 TAGGCCCTTAGTCGTGCGAGAGCCTCGGGCACCATCGGCACCTCGGTGCTAAGATGTGCGGGAGC
** *
20847107 CTTGGACACTATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGACACCATC
66 CTCAGACACTATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATC
20847163 AAAAAACTAA
Statistics
Matches: 279, Mismatches: 48, Indels: 14
0.82 0.14 0.04
Matches are distributed among these distances:
213 240 0.86
214 37 0.13
215 2 0.01
ACGTcount: A:0.19, C:0.31, G:0.31, T:0.18
Consensus pattern (212 bp):
TAGGCCCTTAGTCGTGCGAGAGCCTCGGGCACCATCGGCACCTCGGTGCTAAGATGTGCGGGAGC
CTCAGACACTATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCACCTAG
GCCCTTGGATGTGCGAAAGCCTCGGACACCATCGGCAAACTAGGCCCTCGATCGTACGGAACCCT
CGAACACCATCAGAAAC
Found at i:20847152 original size:256 final size:252
Alignment explanation
Indices: 20846672--20847341 Score: 699
Period size: 256 Copynumber: 2.6 Consensus size: 252
20846662 TGCTAAGATG
* * * * *
20846672 TGTGGGAGCCTCAGACACCATCGGCAACCTAGGCCCTTGGTCGTGGGAGAGCGTCGAGCACCATC
1 TGTGAGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGTGAGAGCCTCGAGCACCATC
* *
20846737 GGCACCTAGGTGCTTGGATGTGCGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTCGTA
66 GGCACCTAGGCGCTT-GATGTGCGGGAGCCTCGGACACCATCGG-AAACTAGGCCCTTGGTCGTG
* * * ** * * *
20846802 CGGAACCCTCGGACACCATCGATAACCTAGGCCGTTAGTCGTGCGAGAGCCTCGGGCACCATCGG
129 CGGGAGCCTCGGGCACCATCG-GCACCTAGGACGTTAGACGTGCGAGAGCCTCGGACACCATCGG
* * * * *** *
20846867 CACCTGGGCGCTCGGGTGTACGGGAGCCTCAGACACTATCGGCAAACTAGGCCCTTGGTC
193 CACCTAGGCCCTCGGGTGTACGAGAGCCTCAGACACCATCAAAAAACTAAGCCCTTGGTC
*
20846927 TTGTGAGAGCCTCGGGCACCATCGGTC-ACCTAGGCCCTTGGTCGTGTGAAAGCCTCGAGCACCA
1 -TGTGAGAGCCTCGGGCACCATCGG-CAACCTAGGCCCTTGGTCGTGTGAGAGCCTCGAGCACCA
* * *
20846991 TCGGCACCTGGGCGCTCGAATGTGCGGGAGCCTCGAACACCATCAGGAAACTAGGCCCTTGGTCG
64 TCGGCACCTAGGCGCTTG-ATGTGCGGGAGCCTCGGACACCATC-GGAAACTAGGCCCTTGGTCG
* * *
20847056 TGCGGGAGCCTCGGGCACCATCGGCACCTCGGTAC--TATGACGTGC-AGGAGCCTTGGACACTA
127 TGCGGGAGCCTCGGGCACCATCGGCACCTAGG-ACGTTA-GACGTGCGA-GAGCCTCGGACACCA
* * *
20847118 TCGGCAACCTAGGCCCT-TGGTCGTGCGAGAGCCTCGGACACCATCAAAAAACTAAGCCCTTGGT
189 TCGGC-ACCTAGGCCCTCGGGT-GTACGAGAGCCTCAGACACCATCAAAAAACTAAGCCCTTGGT
20847182 C
252 C
* * * * *
20847183 -GTACAGGAGCCCCGGGCACCATCGGCAACATAGGCCCTTGGTCGTGTGGGAGCCTCGGGCACCA
1 TGT-GA-GAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGTGAGAGCCTCGAGCACCA
* * * * *
20847247 TCGGCAACATAGGCCCTTGGTCGTGTGGGAGCCTCGGGA-ACTATC-GACAACATAGGCCCTTGG
64 TCGGC-ACCTAGGCGCTTGAT-GTGCGGGAGCCTC-GGACACCATCGGA-AAC-TAGGCCCTTGG
* * *
20847310 TCGTGCGAGAGCCTCGAGTACCATCGGCACCT
124 TCGTGCGGGAGCCTCGGGCACCATCGGCACCT
20847342 GGGTGCTCAG
Statistics
Matches: 348, Mismatches: 50, Indels: 31
0.81 0.12 0.07
Matches are distributed among these distances:
254 5 0.01
255 37 0.11
256 235 0.68
257 69 0.20
258 2 0.01
ACGTcount: A:0.20, C:0.31, G:0.31, T:0.18
Consensus pattern (252 bp):
TGTGAGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGTGAGAGCCTCGAGCACCATC
GGCACCTAGGCGCTTGATGTGCGGGAGCCTCGGACACCATCGGAAACTAGGCCCTTGGTCGTGCG
GGAGCCTCGGGCACCATCGGCACCTAGGACGTTAGACGTGCGAGAGCCTCGGACACCATCGGCAC
CTAGGCCCTCGGGTGTACGAGAGCCTCAGACACCATCAAAAAACTAAGCCCTTGGTC
Found at i:20863695 original size:75 final size:75
Alignment explanation
Indices: 20863571--20863731 Score: 261
Period size: 75 Copynumber: 2.1 Consensus size: 75
20863561 TGATGCAACG
* *
20863571 AGTCCCTCCCCAATCCCAAAGGTAGAATTTGGATATCTTTACATGTGACGTACCCAACAATGAAC
1 AGTCCCTCCCCAATCCCAAAGGTAGAATTTGGATATCATTACATGTGACGTACCCAACAAT-AAA
*
20863636 T-AATCGTTCC
65 TGAATCGTCCC
* *
20863646 GGTCCCTCCCCAATCCCAAAGGTAGAATTTGGATATCATTACATGTGACGTACCCAATAATAAAT
1 AGTCCCTCCCCAATCCCAAAGGTAGAATTTGGATATCATTACATGTGACGTACCCAACAATAAAT
20863711 GAATCGTCCC
66 GAATCGTCCC
20863721 AGTCCCTCCCC
1 AGTCCCTCCCC
20863732 TTGGTCGTGC
Statistics
Matches: 79, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
74 3 0.04
75 76 0.96
ACGTcount: A:0.30, C:0.30, G:0.15, T:0.25
Consensus pattern (75 bp):
AGTCCCTCCCCAATCCCAAAGGTAGAATTTGGATATCATTACATGTGACGTACCCAACAATAAAT
GAATCGTCCC
Found at i:20863791 original size:43 final size:43
Alignment explanation
Indices: 20863729--20863890 Score: 166
Period size: 43 Copynumber: 3.8 Consensus size: 43
20863719 CCAGTCCCTC
*
20863729 CCCTTGGTCGTGCGTGAGCCTTTGGCACCATCGACAACCTAGG
1 CCCTTGGTCGTGCGAGAGCCTTTGGCACCATCGACAACCTAGG
* * ** **
20863772 TCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGTAACCTAGG
1 CCCTTGGTCGTGCGAGAGCCTTTGGCACCATCGACAACCTAGG
* * * ** *
20863815 CCCTTGGTCATGCGAGAGCC-TCGGACACCATCGTCAAAATAGA
1 CCCTTGGTCGTGCGAGAGCCTTTGG-CACCATCGACAACCTAGG
*
20863858 CCCTTGGTCGTGCGAGAG-CATTGAGCACCATCG
1 CCCTTGGTCGTGCGAGAGCCTTTG-GCACCATCG
20863891 GCACCTTGGT
Statistics
Matches: 98, Mismatches: 18, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
42 3 0.03
43 94 0.96
44 1 0.01
ACGTcount: A:0.19, C:0.31, G:0.29, T:0.21
Consensus pattern (43 bp):
CCCTTGGTCGTGCGAGAGCCTTTGGCACCATCGACAACCTAGG
Found at i:20863886 original size:86 final size:86
Alignment explanation
Indices: 20863729--20863891 Score: 202
Period size: 86 Copynumber: 1.9 Consensus size: 86
20863719 CCAGTCCCTC
* * * ** ** * *
20863729 CCCTTGGTCGTGCGTGAGCCTTTGGCACCATCGACAACCTAGGTCCTTGGTCGTGCGGGAGCCTC
1 CCCTTGGTCATGCGAGAGCCTTCGGCACCATCGACAAAATAGACCCTTGGTCGTGCGAGAGCATC
*
20863794 GGGCACCATCGGTAACCTAGG
66 GAGCACCATCGGTAACCTAGG
*
20863815 CCCTTGGTCATGCGAGAGCC-TCGGACACCATCGTCAAAATAGACCCTTGGTCGTGCGAGAGCAT
1 CCCTTGGTCATGCGAGAGCCTTCGG-CACCATCGACAAAATAGACCCTTGGTCGTGCGAGAGCAT
*
20863879 TGAGCACCATCGG
65 CGAGCACCATCGG
20863892 CACCTTGGTG
Statistics
Matches: 64, Mismatches: 12, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
85 3 0.05
86 61 0.95
ACGTcount: A:0.19, C:0.31, G:0.29, T:0.21
Consensus pattern (86 bp):
CCCTTGGTCATGCGAGAGCCTTCGGCACCATCGACAAAATAGACCCTTGGTCGTGCGAGAGCATC
GAGCACCATCGGTAACCTAGG
Found at i:20864070 original size:14 final size:13
Alignment explanation
Indices: 20864036--20864073 Score: 51
Period size: 14 Copynumber: 2.9 Consensus size: 13
20864026 ACATACGAGT
20864036 GTCGCCTGGTA-G
1 GTCGCCTGGTAGG
*
20864048 GTTGCCTGGTAGTG
1 GTCGCCTGGTAG-G
20864062 GTCGCCTGGTAG
1 GTCGCCTGGTAG
20864074 CGTAGCGCGC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
12 10 0.45
14 12 0.55
ACGTcount: A:0.08, C:0.21, G:0.42, T:0.29
Consensus pattern (13 bp):
GTCGCCTGGTAGG
Found at i:20870674 original size:107 final size:107
Alignment explanation
Indices: 20870474--20870676 Score: 232
Period size: 107 Copynumber: 1.9 Consensus size: 107
20870464 GCTAGGATGT
* * *
20870474 GCGGGAGCCTCGAACACCATCGGCAACCTAGGCCCTTGAACTTGCGAGACCCTCGGGCACCATTA
1 GCGGGACCCTCGAACACCATCGGCAACCTAGGCCCTTGAACGTGCGAGACCCTCGGGCACCATGA
* * ***
20870539 GCACCTAGGTGCTTAGATGTGTTTGAGCCTCAAACACCATCG
66 GAACCTAGGTGCTCAGATGTGCAGGAGCCTCAAACACCATCG
** ** *
20870581 GCGGGACCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCG
1 GCGGGACCCTCGAACACCATCGGCAACCTAGGCCCTTGAACGTGCGAGACCCTCGGGCACCAT-G
*
20870646 A-AACC-ATGGCT-CTCGGATGTGCAGGAGCCTC
65 AGAACCTA-GG-TGCTCAGATGTGCAGGAGCCTC
20870677 GGACAACATC
Statistics
Matches: 79, Mismatches: 14, Indels: 6
0.80 0.14 0.06
Matches are distributed among these distances:
106 1 0.01
107 76 0.96
108 2 0.03
ACGTcount: A:0.21, C:0.33, G:0.29, T:0.18
Consensus pattern (107 bp):
GCGGGACCCTCGAACACCATCGGCAACCTAGGCCCTTGAACGTGCGAGACCCTCGGGCACCATGA
GAACCTAGGTGCTCAGATGTGCAGGAGCCTCAAACACCATCG
Found at i:20870816 original size:128 final size:128
Alignment explanation
Indices: 20870588--20870858 Score: 382
Period size: 128 Copynumber: 2.1 Consensus size: 128
20870578 TCGGCGGGAC
*
20870588 CCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGAAACCAT
1 CCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAAAGCCTCGGGCACCATCGAAACCAT
* * *
20870653 GGCTCTCGGATGTGCAGGAGCCTCGGACAACATCGACAAACTAGTCCCTTGATCTTGCGGAAG
66 GGCTCTCGGATGTGCAGGAGCCTCGAACAACATCGACAAACTAGGCCCTTGATCGTGCGGAAG
* * * **
20870716 CCTCGGGCACCATCGGCTACCTAGGCCCTTGGTCGTGTGAAAGCCTCGGGCACCATTGGCACC-T
1 CCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAAAGCCTCGGGCACCATCGAAACCAT
* ** * * *
20870780 GGGTGCTCGGATGTGTGGGAGCCTCGAACACCATCGACAAACTAGGCCCTTGGTCGTGCGGGAG
66 GGCT-CTCGGATGTGCAGGAGCCTCGAACAACATCGACAAACTAGGCCCTTGATCGTGCGGAAG
*
20870844 CCTCGGACACCATCG
1 CCTCGGGCACCATCG
20870859 ACACCTCAAT
Statistics
Matches: 126, Mismatches: 16, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
127 4 0.03
128 122 0.97
ACGTcount: A:0.20, C:0.32, G:0.30, T:0.18
Consensus pattern (128 bp):
CCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAAAGCCTCGGGCACCATCGAAACCAT
GGCTCTCGGATGTGCAGGAGCCTCGAACAACATCGACAAACTAGGCCCTTGATCGTGCGGAAG
Found at i:20870985 original size:86 final size:85
Alignment explanation
Indices: 20870734--20871027 Score: 372
Period size: 85 Copynumber: 3.4 Consensus size: 85
20870724 ACCATCGGCT
* ** * ** **
20870734 ACCTAGGCCCTTGGTCGTGTGAAAGCCTCGGGCACCATTGGCACCTGGGTGCTCGGATGTGTGGG
1 ACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCATTGGCACCTCAGTGCTATGATGTGTGGG
*** **
20870799 AGCCTCGAACACCATCGACA
66 AGCCTCGAACATTGTCGGTA
* * * * *
20870819 AACTAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGACACCTCAATGCTATGATGTGCGGG
1 ACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCATTGGCACCTCAGTGCTATGATGTGTGGG
*
20870884 AGCCTCGGACATTGTCGGTA
66 AGCCTCGAACATTGTCGGTA
* * *
20870904 ACCTAGACCCTTGGTCGTGCGGGAGCCTCAGACACCATTGGCAAACTCAGTGCTATGATGTGTGG
1 ACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCATTGGC-ACCTCAGTGCTATGATGTGTGG
20870969 GAGCCTCGAACATTGTCGGTA
65 GAGCCTCGAACATTGTCGGTA
*
20870990 ACCTAGGCCCTTGGTCGTGCGGTAGCCTCGGACACCAT
1 ACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCAT
20871028 CAGTAAGCTA
Statistics
Matches: 177, Mismatches: 31, Indels: 1
0.85 0.15 0.00
Matches are distributed among these distances:
85 103 0.58
86 74 0.42
ACGTcount: A:0.20, C:0.29, G:0.30, T:0.21
Consensus pattern (85 bp):
ACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCATTGGCACCTCAGTGCTATGATGTGTGGG
AGCCTCGAACATTGTCGGTA
Found at i:20871127 original size:85 final size:82
Alignment explanation
Indices: 20871006--20871607 Score: 503
Period size: 85 Copynumber: 7.1 Consensus size: 82
20870996 GCCCTTGGTC
* * * * * *
20871006 GTGCGGTAGCCTCGGACACCATCAGTAAGCTAGGCCCTTGGTCGTGCGGGAGCCTAGGGCACTAT
1 GTGCGGGAGCCTCAGACACCATCGGCAA-CTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCAT
*
20871071 CGGTACCTCAGTGCTATGAT
65 CGGCACCT-AGTGCT-TGAT
* * * * *
20871091 GTGC-AGATGCCTCAGACACTATCGGTAACTTAGGCCCTTCGTCGTGCGGGAGCCTCGAGCACCA
1 GTGCGGGA-GCCTCAGACACCATCGGCAAC-TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCA
* * *
20871155 TCGACAACTTGGTGCTTGAAT
64 TCGGC-ACCTAGTGCTTG-AT
* * * *
20871176 GTGCGGGAACCTCTGACACCATCGGCAACATAGGCCCTTGGTCGTGTGTGAGCCTCGGGCACCAT
1 GTGCGGGAGCCTCAGACACCATCGGCAAC-TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCAT
* *
20871241 CGGCAACTAG-GCCCTTGGT
65 CGGCACCTAGTG--CTTGAT
* ** **
20871260 CGTGCTGGAGCCTTGGGA-ACCATCGGCAACTACACCCTTGGTCGTGCGGGAGCCTCGGGCACCA
1 -GTGCGGGAGCC-TCAGACACCATCGGCAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCA
*
20871324 TCGGCACCTAGGTGCTCGAAT
64 TCGGCACCTA-GTGCTTG-AT
* * *
20871345 GTGCGAGAGCCTCAGGCACCATCGGCAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGGGACCATC
1 GTGCGGGAGCCTCAGACACCATCGGCAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATC
* ** *
20871410 GGCAACTAGACCCTTGGT
66 GGCACCTAG-TGCTTGAT
* * * * * *
20871428 CGTGCGGGAGCCTCGGGCACCATCAGCAAACTAGGCCCTTGGTCGTGTGGGAGCCTAGGGCACTA
1 -GTGCGGGAGCCTCAGACACCATCGGC-AACTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCA
* *
20871493 -CTGGTACCTCAGTGCTACGAT
64 TC-GGCACCT-AGTGCT-TGAT
* * * * * * **
20871514 GTGCGGAAGCCTCAGACACTACCAGCAGCCTAGG-CCTTGCTCGTGCCAGAGCCTCGGGCACCAT
1 GTGCGGGAGCCTCAGACACCATCGGCA-ACTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCAT
*
20871578 CGACACCTCAGTGCTATGAT
65 CGGCACCT-AGTGCT-TGAT
20871598 GTGCGGGAGC
1 GTGCGGGAGC
20871608 ATCGGACATT
Statistics
Matches: 415, Mismatches: 81, Indels: 43
0.77 0.15 0.08
Matches are distributed among these distances:
83 5 0.01
84 187 0.45
85 210 0.51
86 13 0.03
ACGTcount: A:0.19, C:0.30, G:0.31, T:0.20
Consensus pattern (82 bp):
GTGCGGGAGCCTCAGACACCATCGGCAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATC
GGCACCTAGTGCTTGAT
Found at i:20871271 original size:42 final size:42
Alignment explanation
Indices: 20870581--20871490 Score: 644
Period size: 42 Copynumber: 21.4 Consensus size: 42
20870571 AACACCATCG
*
20870581 GCGGGACCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGT
1 GCGGGAGCCTCGGGCACCATCGGCAA-CTAGGCCCTTGGTCGT
* * * * *
20870624 GCGAGAGCCTCGGGCACCATC-GAAACCATGGCTCTCGGAT-GT
1 GCGGGAGCCTCGGGCACCATCGGCAACTA-GGCCCTTGG-TCGT
* * * * * * *
20870666 GCAGGAGCCTCGGACAACATCGACAAACTAGTCCCTTGATCTT
1 GCGGGAGCCTCGGGCACCATCGGC-AACTAGGCCCTTGGTCGT
* *
20870709 GCGGAAGCCTCGGGCACCATCGGCTACCTAGGCCCTTGGTCGT
1 GCGGGAGCCTCGGGCACCATCGGC-AACTAGGCCCTTGGTCGT
* ** * * * ** *
20870752 GTGAAAGCCTCGGGCACCATTGGCACCTGGGTGCTCGGAT-GT
1 GCGGGAGCCTCGGGCACCATCGGCAACTAGGCCCTTGG-TCGT
* ** *
20870794 GTGGGAGCCTCGAACACCATCGACAAACTAGGCCCTTGGTCGT
1 GCGGGAGCCTCGGGCACCATCGGC-AACTAGGCCCTTGGTCGT
* * * * *
20870837 GCGGGAGCCTCGGACACCATCGACACCTCAATG--CTATGAT-GT
1 GCGGGAGCCTCGGGCACCATCGGCAACT--AGGCCCT-TGGTCGT
* *** * *
20870879 GCGGGAGCCTCGGACATTGTCGGTAACCTAGACCCTTGGTCGT
1 GCGGGAGCCTCGGGCACCATCGGCAA-CTAGGCCCTTGGTCGT
* * * *
20870922 GCGGGAGCCTCAGACACCATTGGCAAACTCAGTG--CTATGAT-GT
1 GCGGGAGCCTCGGGCACCATCGGC-AACT-AG-GCCCT-TGGTCGT
* ** *** *
20870965 GTGGGAGCCTCGAACATTGTCGGTAACCTAGGCCCTTGGTCGT
1 GCGGGAGCCTCGGGCACCATCGGCAA-CTAGGCCCTTGGTCGT
* * * *
20871008 GCGGTAGCCTCGGACACCATCAGTAAGCTAGGCCCTTGGTCGT
1 GCGGGAGCCTCGGGCACCATCGGCAA-CTAGGCCCTTGGTCGT
* * * * *
20871051 GCGGGAGCCTAGGGCACTATCGGTACCTCAGTG--CTATGAT-GT
1 GCGGGAGCCTCGGGCACCATCGGCAACT-AG-GCCCT-TGGTCGT
* * * * * *
20871093 GC-AGATGCCTCAGACACTATCGGTAACTTAGGCCCTTCGTCGT
1 GCGGGA-GCCTCGGGCACCATCGGCAAC-TAGGCCCTTGGTCGT
* * * ** *
20871136 GCGGGAGCCTCGAGCACCATCGACAACTTGGTGCTTGAAT-GT
1 GCGGGAGCCTCGGGCACCATCGGCAACTAGGCCCTTG-GTCGT
* * *
20871178 GCGGGAACCTCTGACACCATCGGCAACATAGGCCCTTGGTCGT
1 GCGGGAGCCTCGGGCACCATCGGCAAC-TAGGCCCTTGGTCGT
* *
20871221 GTGTGAGCCTCGGGCACCATCGGCAACTAGGCCCTTGGTCGT
1 GCGGGAGCCTCGGGCACCATCGGCAACTAGGCCCTTGGTCGT
* * * **
20871263 GCTGGAGCCTTGGGAACCATCGGCAACTACACCCTTGGTCGT
1 GCGGGAGCCTCGGGCACCATCGGCAACTAGGCCCTTGGTCGT
* ** * *
20871305 GCGGGAGCCTCGGGCACCATCGGCACCTAGGTGCTCGAAT-GT
1 GCGGGAGCCTCGGGCACCATCGGCAACTAGGCCCTTG-GTCGT
* *
20871347 GCGAGAGCCTCAGGCACCATCGGCAACTAGGCCCTTGGTCGT
1 GCGGGAGCCTCGGGCACCATCGGCAACTAGGCCCTTGGTCGT
* *
20871389 GCGGGAGCCTCGGGGACCATCGGCAACTAGACCCTTGGTCGT
1 GCGGGAGCCTCGGGCACCATCGGCAACTAGGCCCTTGGTCGT
*
20871431 GCGGGAGCCTCGGGCACCATCAGCAAACTAGGCCCTTGGTCGT
1 GCGGGAGCCTCGGGCACCATCGGC-AACTAGGCCCTTGGTCGT
* *
20871474 GTGGGAGCCTAGGGCAC
1 GCGGGAGCCTCGGGCAC
20871491 TACTGGTACC
Statistics
Matches: 671, Mismatches: 158, Indels: 76
0.74 0.17 0.08
Matches are distributed among these distances:
41 8 0.01
42 331 0.49
43 316 0.47
44 16 0.02
ACGTcount: A:0.19, C:0.30, G:0.31, T:0.20
Consensus pattern (42 bp):
GCGGGAGCCTCGGGCACCATCGGCAACTAGGCCCTTGGTCGT
Found at i:20871607 original size:169 final size:168
Alignment explanation
Indices: 20871125--20871582 Score: 458
Period size: 169 Copynumber: 2.7 Consensus size: 168
20871115 GTAACTTAGG
* * * * * * * * * *
20871125 CCCTTCGTCGTGCGGGAGCCTCGAGCACCATCGACAACTTGGTGCTTGAATGTGCGGGAACCTCT
1 CCCTTGGTCGTGCGGGAGCCTAGGGCACCATCGGCACCTAGGTGCTCGAATGTGCGAGAGCCTCA
* * * *** * *
20871190 GACACCATCGGCAACATAGGCCCTTGGTCGTGTGTGAGCCTCGGGCACCATCGGCAACTAGGCCC
66 GACACCACCAGCAAC-TAGGCCCTTGCTCGTGCCAGAGCCTCGGGCACCATCGACAACTAGACCC
* * * *
20871255 TTGGTCGTGCTGGAGCCTTGGGAACCATCGGCAACTACA
130 TTGATCGTGCGGGAGCCTCGGGAACCATCAGCAACTACA
*
20871294 CCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGTGCTCGAATGTGCGAGAGCCTCA
1 CCCTTGGTCGTGCGGGAGCCTAGGGCACCATCGGCACCTAGGTGCTCGAATGTGCGAGAGCCTCA
* * * * ** * *
20871359 GGCACCATCGGCAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGGGACCATCGGCAACTAGACCCT
66 GACACCACCAGCAACTAGGCCCTTGCTCGTGCCAGAGCCTCGGGCACCATCGACAACTAGACCCT
* * **
20871424 TGGTCGTGCGGGAGCCTCGGGCACCATCAGCAAACTAGG
131 TGATCGTGCGGGAGCCTCGGGAACCATCAGC-AACTACA
* * *
20871463 CCCTTGGTCGTGTGGGAGCCTAGGGCACTA-CTGGTACCTCA-GTGCTACG-ATGTGCG-GAAGC
1 CCCTTGGTCGTGCGGGAGCCTAGGGCACCATC-GGCACCT-AGGTGCT-CGAATGTGCGAG-AGC
* *
20871524 CTCAGACACTACCAGCAGCCTAGG-CCTTGCTCGTGCCAGAGCCTCGGGCACCATCGACA
62 CTCAGACACCACCAGCA-ACTAGGCCCTTGCTCGTGCCAGAGCCTCGGGCACCATCGACA
20871583 CCTCAGTGCT
Statistics
Matches: 249, Mismatches: 34, Indels: 12
0.84 0.12 0.04
Matches are distributed among these distances:
168 75 0.30
169 166 0.67
170 8 0.03
ACGTcount: A:0.19, C:0.32, G:0.31, T:0.19
Consensus pattern (168 bp):
CCCTTGGTCGTGCGGGAGCCTAGGGCACCATCGGCACCTAGGTGCTCGAATGTGCGAGAGCCTCA
GACACCACCAGCAACTAGGCCCTTGCTCGTGCCAGAGCCTCGGGCACCATCGACAACTAGACCCT
TGATCGTGCGGGAGCCTCGGGAACCATCAGCAACTACA
Found at i:20872561 original size:104 final size:105
Alignment explanation
Indices: 20872376--20872643 Score: 418
Period size: 105 Copynumber: 2.6 Consensus size: 105
20872366 TGTATATAAA
** * *
20872376 AGGGGTTGCTGTGTGCTGATTCCCCGATTT-ATGGGTGGTGCTATGTGCGTGATCCACCATATCT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTTCATTGGTGGTGCTAAGTGCGT-ATCCACCATATCT
*
20872440 TTGAAATGTGAAA-GGGGGTTGCTATGTGCTGATTCCCCCG
65 TTGAAATGTAAAAGGGGGGTTGCTATGTGCTGATTCCCCCG
20872480 AGGGGTTGCTAAGTGCTGATTCCCCGATTTCATTGGTGGTGCTAAGTGCGATATCCACCATATCT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTTCATTGGTGGTGCTAAGTGCG-TATCCACCATATCT
20872545 TTGAAATG-AAAAGGGGGGTTGCTATGTGCTGATTCCCCCG
65 TTGAAATGTAAAAGGGGGGTTGCTATGTGCTGATTCCCCCG
* *
20872585 AGGGGTTGCTAAGTGCTGATTCCCCGA-TTCAGTGGTGGTGCTAAGTGCGGGATCCACCA
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTTCATTGGTGGTGCTAAGTGC-GTATCCACCA
20872644 ATAACGGCTA
Statistics
Matches: 153, Mismatches: 7, Indels: 8
0.91 0.04 0.05
Matches are distributed among these distances:
104 59 0.39
105 93 0.61
106 1 0.01
ACGTcount: A:0.19, C:0.20, G:0.31, T:0.30
Consensus pattern (105 bp):
AGGGGTTGCTAAGTGCTGATTCCCCGATTTCATTGGTGGTGCTAAGTGCGTATCCACCATATCTT
TGAAATGTAAAAGGGGGGTTGCTATGTGCTGATTCCCCCG
Found at i:20874126 original size:42 final size:42
Alignment explanation
Indices: 20873852--20874607 Score: 456
Period size: 43 Copynumber: 17.8 Consensus size: 42
20873842 GGGTGTTACA
* * * **
20873852 CCCTTGGTCTTGTGGGAGCCTCGGACACCATTAGCAAGCTAGG
1 CCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAA-CTAGG
* * * * *
20873895 CCCTTGGTCGTGCGGGAGCCTAGGGTACTATCGGCACCTCGG
1 CCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACTAGG
** * * * * *
20873937 TGCTATGAT-GTGC-AGATGCCTCAGACACTATC-GCTAACCTAGG
1 CCCT-TGGTCGTGCGGGA-GCCTCGGGCACCATCGGC-AA-CTAGG
* * * * * *
20873980 CCTTTCGTCGTGCGGGGAGCCTCGAGCACCATCGACACCTTGG
1 CCCTTGGTCGTGC-GGGAGCCTCGGGCACCATCGGCAACTAGG
** * * *
20874023 TGCTTGGAT-GTGCGGGAACCTCTGACACCATCGGCAACATAGG
1 CCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAAC-TAGG
*
20874066 CCCTTGGTTGTGCGGGAGCCTCGGGCACCATCGGCAACTAGG
1 CCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACTAGG
* * * *
20874108 CCCTTAGTCGTGCTGGAGCCTCGGGGACCATCGGCAACTAGA
1 CCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACTAGG
* *
20874150 CCCTTGGTCGTGCAGGAGCCTCGGGCACCATCGGCACCTAGG
1 CCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACTAGG
** * * * *
20874192 TGCTCGAAT-GTGCGAGAGCCTCGGACACCATCGGCAAACTAGG
1 CCCTTG-GTCGTGCGGGAGCCTCGGGCACCATCGGC-AACTAGG
* * ** * *
20874235 CCCTTGGTCTTGGGGGAGCCTCGGGCACCATTAGCATCTGGG
1 CCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACTAGG
* * ** *
20874277 CGCTCGGAT-GTATGGGAGCCTCGGACACCATCGGCAAACTAGG
1 CCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGC-AACTAGG
* *
20874320 CCCTTGGTCGTGCGGGAGCCTCGGGCACCATTGGCACCTCAGTG
1 CCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACT-AG-G
* * * * * * * * * *
20874364 --CTATGAT-GTACAGGATCGTCGAGCAGCACCGGCACCTTGG
1 CCCT-TGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACTAGG
** * * *
20874404 -TGTTGGAT-GTGCGGGAACCTCGGACAGCATCGGCAACCTAGG
1 CCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAA-CTAGG
* ** *
20874446 CCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCTCCTGGG
1 CCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACTAGG
** * * *** * *
20874488 TGCTCAGAT-GTGCGGGAGCCTCAAACGCCATCGGCAAACTAAG
1 CCCT-TGGTCGTGCGGGAGCCTCGGGCACCATCGGC-AACTAGG
* *
20874531 CCCTTGGTCGTGTGGGAGCCTCGGGCACCATCGGCAAAATAGG
1 CCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-AACTAGG
* ** *
20874574 CCTTTGGTCGTGCAAGAGCCTCAGGCACCATCGG
1 CCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGG
20874608 TACCTTGGTG
Statistics
Matches: 530, Mismatches: 155, Indels: 56
0.72 0.21 0.08
Matches are distributed among these distances:
40 3 0.01
41 27 0.05
42 241 0.45
43 242 0.46
44 14 0.03
45 3 0.01
ACGTcount: A:0.18, C:0.30, G:0.32, T:0.20
Consensus pattern (42 bp):
CCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACTAGG
Found at i:20874138 original size:85 final size:84
Alignment explanation
Indices: 20873866--20874607 Score: 337
Period size: 85 Copynumber: 8.8 Consensus size: 84
20873856 TGGTCTTGTG
* ** * * * *
20873866 GGAGCCTCGGACACCATTAGCAAGC-TAGGCCCTTGGTCGTGCGGGAGCCTAGGGTACTATCGGC
1 GGAGCCTCGGGCACCATCGGCAA-CATAGGCCCTTGGTTGTGCGGGAGCCTCGGGCACCATCGGC
* * **
20873930 ACCTCGGTGC-TATGATGTGC-
65 AACTAGGCCCTTA-G-TGTGCT
* * * * * * * * *
20873950 AGATGCCTCAGACACTATC-GCTAACCTAGGCCTTTCGTCGTGCGGGGAGCCTCGAGCACCATCG
1 GGA-GCCTCGGGCACCATCGGC-AACATAGGCCCTTGGTTGTGC-GGGAGCCTCGGGCACCATCG
* * * ** * *
20874014 ACACCTTGGTGCTTGGATGTGCG
63 GCAACTAGGCCCTTAG-TGTGCT
* * *
20874037 GGAACCTCTGACACCATCGGCAACATAGGCCCTTGGTTGTGCGGGAGCCTCGGGCACCATCGGCA
1 GGAGCCTCGGGCACCATCGGCAACATAGGCCCTTGGTTGTGCGGGAGCCTCGGGCACCATCGGCA
20874102 ACTAGGCCCTTAGTCGTGCT
66 ACTAGGCCCTTAGT-GTGCT
* * * *
20874122 GGAGCCTCGGGGACCATCGGCAAC-TAGACCCTTGGTCGTGCAGGAGCCTCGGGCACCATCGGCA
1 GGAGCCTCGGGCACCATCGGCAACATAGGCCCTTGGTTGTGCGGGAGCCTCGGGCACCATCGGCA
* ** * *
20874186 CCTAGGTGCTCGAATGTGC-
66 ACTAGGCCCT-TAGTGTGCT
* * **
20874205 GAGAGCCTCGGACACCATCGGCAA-ACTAGGCCCTTGGTCT-TGGGGGAGCCTCGGGCACCATTA
1 G-GAGCCTCGGGCACCATCGGCAACA-TAGGCCCTTGGT-TGTGCGGGAGCCTCGGGCACCATCG
* * * ** *
20874268 GCATCTGGGCGCTCGGATGT-AT
63 GCAACTAGGCCCTTAG-TGTGCT
* * *
20874290 GGGAGCCTCGGACACCATCGGCAA-ACTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATTGG
1 -GGAGCCTCGGGCACCATCGGCAACA-TAGGCCCTTGGTTGTGCGGGAGCCTCGGGCACCATCGG
* ** * * *
20874354 CACCTCAGTGCTATGA-TGTACA
64 CAACT-AG-GCCCTTAGTGTGCT
* * * * * * * ** * * * *
20874376 GGATCGTCGAGCAGCACCGGC-ACCTTGG-TGTTGGATGTGCGGGAACCTCGGACAGCATCGGCA
1 GGAGCCTCGGGCACCATCGGCAACATAGGCCCTTGGTTGTGCGGGAGCCTCGGGCACCATCGGCA
*
20874439 ACCTAGGCCCTTGGTCGTGC-
66 A-CTAGGCCCTTAGT-GTGCT
* * * ** ** * *** *
20874459 GAGAGCCTCGGGCACCATCGGC-TCCTGGGTGCTCAGATGTGCGGGAGCCTCAAACGCCATCGGC
1 G-GAGCCTCGGGCACCATCGGCAACATAGGCCCTTGGTTGTGCGGGAGCCTCGGGCACCATCGGC
* *
20874523 AAACTAAGCCCTTGGTCGTG-T
65 -AACTAGGCCCTTAGT-GTGCT
* * * ** *
20874544 GGGAGCCTCGGGCACCATCGGCAAAATAGGCCTTTGGTCGTGCAAGAGCCTCAGGCACCATCGG
1 -GGAGCCTCGGGCACCATCGGCAACATAGGCCCTTGGTTGTGCGGGAGCCTCGGGCACCATCGG
20874608 TACCTTGGTG
Statistics
Matches: 506, Mismatches: 122, Indels: 58
0.74 0.18 0.08
Matches are distributed among these distances:
82 3 0.01
83 32 0.06
84 103 0.20
85 268 0.53
86 92 0.18
87 8 0.02
ACGTcount: A:0.19, C:0.30, G:0.32, T:0.19
Consensus pattern (84 bp):
GGAGCCTCGGGCACCATCGGCAACATAGGCCCTTGGTTGTGCGGGAGCCTCGGGCACCATCGGCA
ACTAGGCCCTTAGTGTGCT
Found at i:20874224 original size:169 final size:170
Alignment explanation
Indices: 20873986--20874358 Score: 468
Period size: 169 Copynumber: 2.2 Consensus size: 170
20873976 TAGGCCTTTC
* * * * * * *
20873986 GTCGTGCGGGGAGCCTCGAGCACCATCGACACCTTGGTGCTTGGATGTGCGGGAACCTCTGACAC
1 GTCGTGC-GGGAGCCTCGGGCACCATCGGCACCTAGGTGCTCGAATGTGCGAGAACCTCGGACAC
* *
20874051 CATCGGC-AACATAGGCCCTTGGT-TGTGCGGGAGCCTCGGGCACCATCGGCAACTAGGCCCTTA
65 CATCGGCAAAC-TAGGCCCTTGGTCT-TGCGGGAGCCTCGGGCACCATCAGCAACTAGGCCCTCA
* **
20874114 G-TCGTGCT-GGAGCCTCGGGGACCATCGGC-AACTAGACCCTTG
128 GAT-GT-ATGGGAGCCTCGGACACCATCGGCAAACTAGACCCTTG
* *
20874156 GTCGTGCAGGAGCCTCGGGCACCATCGGCACCTAGGTGCTCGAATGTGCGAGAGCCTCGGACACC
1 GTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGTGCTCGAATGTGCGAGAACCTCGGACACC
* * * * * *
20874221 ATCGGCAAACTAGGCCCTTGGTCTTGGGGGAGCCTCGGGCACCATTAGCATCTGGGCGCTCGGAT
66 ATCGGCAAACTAGGCCCTTGGTCTTGCGGGAGCCTCGGGCACCATCAGCAACTAGGCCCTCAGAT
*
20874286 GTATGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTG
131 GTATGGGAGCCTCGGACACCATCGGCAAACTAGACCCTTG
*
20874326 GTCGTGCGGGAGCCTCGGGCACCATTGGCACCT
1 GTCGTGCGGGAGCCTCGGGCACCATCGGCACCT
20874359 CAGTGCTATG
Statistics
Matches: 175, Mismatches: 23, Indels: 10
0.84 0.11 0.05
Matches are distributed among these distances:
168 1 0.01
169 119 0.68
170 55 0.31
ACGTcount: A:0.18, C:0.31, G:0.33, T:0.19
Consensus pattern (170 bp):
GTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGTGCTCGAATGTGCGAGAACCTCGGACACC
ATCGGCAAACTAGGCCCTTGGTCTTGCGGGAGCCTCGGGCACCATCAGCAACTAGGCCCTCAGAT
GTATGGGAGCCTCGGACACCATCGGCAAACTAGACCCTTG
Found at i:20874308 original size:211 final size:211
Alignment explanation
Indices: 20874078--20874652 Score: 640
Period size: 211 Copynumber: 2.7 Consensus size: 211
20874068 CTTGGTTGTG
* * *
20874078 CGGGAGCCTCGGGCACCATCGGC-AACTAGGCCCTTAGTCGTGCTGGAGCCTCGGGGACCATCGG
1 CGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTCGTGCTGGAGCCTCGGGCACCATCGG
* *
20874142 CAACTAGACCCTTGGTCGTGCAGGAGCCTCGGGCACCATCGGCACCTAGGTGCTCGAATGTGCGA
66 CAACTAG-CCCTTGGTCGTGCAGGAGCCTCGGGCACCATCGGCACCTTGGTGCTCGAATGTGCGG
* * * * *
20874207 GAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTCTTGGGGGAGCCTCGGGCACCATTAGCAT
130 GAGCCTCGGACAACATCGGCAAACTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCAGC-T
*
20874272 -CTGGGCGCTCGGATGTA
194 CCTGGGCGCTCAGATGTA
* * *
20874289 TGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATTGG
1 CGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTCGTGCTGGAGCCTCGGGCACCATCGG
* ** * * * * * * * * *
20874354 CACCTCAGTGCTATGAT-GTACAGGATCGTCGAGCAGCACCGGCACCTTGGTG-TTGGATGTGCG
66 CAACT-AGCCCT-TGGTCGTGCAGGAGCCTCGGGCACCATCGGCACCTTGGTGCTCGAATGTGCG
* * * *
20874417 GGAACCTCGGACAGCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCT
129 GGAGCCTCGGACAACATCGGCAAACTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCAGCT
* *
20874482 CCTGGGTGCTCAGATGTG
194 CCTGGGCGCTCAGATGTA
** * *
20874500 CGGGAGCCTCAAACGCCATCGGCAAACTAAGCCCTTGGTCGTG-TGGGAGCCTCGGGCACCATCG
1 CGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTCGTGCT-GGAGCCTCGGGCACCATCG
* * * * * * *
20874564 GCAAAATAGGCCTTTGGTCGTGCAAGAGCCTCAGGCACCATCGGTACCTTGGTGGCTCGAATTTA
65 GC-AACTA-GCCCTTGGTCGTGCAGGAGCCTCGGGCACCATCGGCACCTTGGT-GCTCGAATGTG
20874629 CGGGAGCCTC-GAGCAACATCGGCA
127 CGGGAGCCTCGGA-CAACATCGGCA
20874653 CCTTGGTGGC
Statistics
Matches: 294, Mismatches: 59, Indels: 19
0.79 0.16 0.05
Matches are distributed among these distances:
210 1 0.00
211 161 0.55
212 100 0.34
213 8 0.03
214 24 0.08
ACGTcount: A:0.19, C:0.30, G:0.33, T:0.19
Consensus pattern (211 bp):
CGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTCGTGCTGGAGCCTCGGGCACCATCGG
CAACTAGCCCTTGGTCGTGCAGGAGCCTCGGGCACCATCGGCACCTTGGTGCTCGAATGTGCGGG
AGCCTCGGACAACATCGGCAAACTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCAGCTCC
TGGGCGCTCAGATGTA
Found at i:20874523 original size:126 final size:125
Alignment explanation
Indices: 20874290--20874696 Score: 383
Period size: 126 Copynumber: 3.2 Consensus size: 125
20874280 TCGGATGTAT
* *
20874290 GGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATTGGC
1 GGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGC
* * * * * *
20874355 ACCTCAGTGCT-ATGATGTACAGGATCGTCGAGCAGCACCGGCACCTTGGTGTTGGATGTGC
66 TCCTCGGTGCTCA-GATGTACGGGAGCCTCGAGC-GCATCGGCACCTTGGTGTTGGATGTGC
* * *
20874416 GGGAACCTCGGACAGCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGC
1 GGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGC
* * * * * * *** *
20874481 TCCTGGGTGCTCAGATGTGCGGGAGCCTCAAACGCCATCGGCAAACTAAGCCCTTGG-TCGTGT
66 TCCTCGGTGCTCAGATGTACGGGAGCCTCGAGCG-CATCGGC-ACCT-TGGTGTTGGAT-GTGC
* * * * *
20874544 GGGAGCCTCGGGCACCATCGGCAAAATAGGCCTTTGGTCGTGCAAGAGCCTCAGGCACCATCGG-
1 GGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGC
* * *
20874608 TACCTTGGTGGCTC-GAATTTACGGGAGCCTCGAGCAACATCGGCACCTTGGTGGCTCT-GATGT
66 T-CCTCGGT-GCTCAG-ATGTACGGGAGCCTCGAGC-GCATCGGCACCTTGGT-G-T-TGGATGT
*
20874671 AC
124 GC
*
20874673 GGGAGCCTTGGACACCATCGGCAA
1 GGGAGCCTCGGACACCATCGGCAA
20874697 CCTTGGTGCT
Statistics
Matches: 224, Mismatches: 44, Indels: 23
0.77 0.15 0.08
Matches are distributed among these distances:
125 1 0.00
126 88 0.39
127 7 0.03
128 74 0.33
129 52 0.23
130 2 0.01
ACGTcount: A:0.19, C:0.29, G:0.32, T:0.19
Consensus pattern (125 bp):
GGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGC
TCCTCGGTGCTCAGATGTACGGGAGCCTCGAGCGCATCGGCACCTTGGTGTTGGATGTGC
Found at i:20874636 original size:43 final size:42
Alignment explanation
Indices: 20874589--20874725 Score: 136
Period size: 43 Copynumber: 3.2 Consensus size: 42
20874579 GGTCGTGCAA
* *
20874589 GAGCCTCAGGCACCATCGGTACCTTGGTGGCTC-GAATTTACGG
1 GAGCCTC-GGCACCATCGGAACCTTGGTGGCTCTG-ATGTACGG
* *
20874632 GAGCCTCGAGCAACATCGGCACCTTGGTGGCTCTGATGTACGG
1 GAGCCTCG-GCACCATCGGAACCTTGGTGGCTCTGATGTACGG
* **
20874675 GAGCCTTGGACACCATCGGCAACCTTGGT-GCT-TAGATGGGCGG
1 GAGCCTCGG-CACCATCGG-AACCTTGGTGGCTCT-GATGTACGG
20874718 GAGCCTCG
1 GAGCCTCG
20874726 AGGACCCCCG
Statistics
Matches: 80, Mismatches: 9, Indels: 10
0.81 0.09 0.10
Matches are distributed among these distances:
42 3 0.04
43 68 0.85
44 9 0.11
ACGTcount: A:0.18, C:0.28, G:0.33, T:0.21
Consensus pattern (42 bp):
GAGCCTCGGCACCATCGGAACCTTGGTGGCTCTGATGTACGG
Found at i:20881949 original size:31 final size:31
Alignment explanation
Indices: 20881911--20881972 Score: 124
Period size: 31 Copynumber: 2.0 Consensus size: 31
20881901 ATCCCAAAGG
20881911 TAGAATTCAGATATCGTTACATGTGACGTAC
1 TAGAATTCAGATATCGTTACATGTGACGTAC
20881942 TAGAATTCAGATATCGTTACATGTGACGTAC
1 TAGAATTCAGATATCGTTACATGTGACGTAC
20881973 CCAATGATGA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.32, C:0.16, G:0.19, T:0.32
Consensus pattern (31 bp):
TAGAATTCAGATATCGTTACATGTGACGTAC
Found at i:20882454 original size:85 final size:85
Alignment explanation
Indices: 20882352--20882510 Score: 198
Period size: 85 Copynumber: 1.9 Consensus size: 85
20882342 TCCACCTTGG
* * *
20882352 TGCTAAGATGTGTGGGAGCCTC-AGACACCATCGG-TAACTTAGGCCCCTACTCGTGC-GAGAGC
1 TGCTAAGATGTGCGGGAGCCTCGA-ACACCATCGGCAAAC-TAGGCCCCTACTCGTGCAG-GACC
20882414 CTCGGGCACCATTGGCGCCTAAA
63 CTCGGGCACCATTGGCGCCTAAA
* * * **
20882437 TGCTTAGATGTGCGGGAGCCTCGAACACCATTGGCAAACTAGGCCCTTGGTCGTGCAGGACCCTC
1 TGCTAAGATGTGCGGGAGCCTCGAACACCATCGGCAAACTAGGCCCCTACTCGTGCAGGACCCTC
20882502 GGGCACCAT
66 GGGCACCAT
20882511 CGACAACTTA
Statistics
Matches: 63, Mismatches: 8, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
85 58 0.92
86 5 0.08
ACGTcount: A:0.21, C:0.30, G:0.29, T:0.20
Consensus pattern (85 bp):
TGCTAAGATGTGCGGGAGCCTCGAACACCATCGGCAAACTAGGCCCCTACTCGTGCAGGACCCTC
GGGCACCATTGGCGCCTAAA
Found at i:20882509 original size:43 final size:43
Alignment explanation
Indices: 20882446--20884805 Score: 803
Period size: 43 Copynumber: 55.5 Consensus size: 43
20882436 ATGCTTAGAT
** *
20882446 GTGCGGGAGCCTCGAACACCATTGGCAAACTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAAACTAGGCCCTTGGTC
* * *
20882489 GTGCAGGACCCTCGGGCACCATCGAC-AACTTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAAAC-TAGGCCCTTGGTC
* * * * * *
20882532 GTGCGAGAGCCTCGGGCACCAACGGC-ACCTGGGCGCTCGGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCAAACTAGGCCCTTGG-TC
* * * *
20882574 GTGCGGGAGCCTCAGACAGCATCAGCAAACTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAAACTAGGCCCTTGGTC
* * * * * * ** *
20882617 ATGCGGGAGCCTCAGACACCATTGGC-ACCTCGGTACTATGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCAAACTAGGCCCT-TGGTC
* * * *
20882659 GTGCGGGAGCCTCAGGCACCACCGGCAACCTAGGCCCCTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAAACTAGGCCCTTGGTC
* ** * * ***
20882702 ATATGAGG-GCCTTGGGCACCATCGGC-TACTAGATGCTTGGAT-
1 GTGCG-GGAGCCTCGGGCACCATCGGCAAACTAGGCCCTTGG-TC
* ** * *
20882744 GTGCGGGAGCCTAGAACACCATCGGTAAACTAGGCCCTTGATC
1 GTGCGGGAGCCTCGGGCACCATCGGCAAACTAGGCCCTTGGTC
* * * * * **
20882787 GTGCGGGACCCTCGAGCACCTTCGACAACCTAGGCCCTTTTTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAAACTAGGCCCTTGGTC
* * * * * * *
20882830 GTGCGAGATCCTCGGGCACTAACGGC--ACTTGGGCGCTCGGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCAAAC-TAGGCCCTTGG-TC
*** * *
20882872 GTGCAAAAGCCTAGGACACCATCGGCAAACTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAAACTAGGCCCTTGGTC
* * * * *
20882915 TTGCAGGAGCCTCGGGCACCATCCGCTACCTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAAACTAGGCCCTTGGTC
* ** * * ** * *
20882958 GTGTGAAAGCCTCGGGCACCATCGGC-ACCTGGGAGCTCAGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCAAACTAGGCCCT-TGGTC
* * * ** *
20883000 GTGTGGGAGCCTCAGACACCATCGAAAAACTAGGCCCTTGGTT
1 GTGCGGGAGCCTCGGGCACCATCGGCAAACTAGGCCCTTGGTC
* ** * * * ** *
20883043 ATGCGGGAGCCT-GAAACACCATTGGC-ACCTCGGTGCTATGAT-
1 GTGCGGGAGCCTCG-GGCACCATCGGCAAACTAGGCCCT-TGGTC
* * * ** * * * *
20883085 GTGCAGGAGCCTCAGACACTGTCGGTAACCTAAGCCCTTGGTT
1 GTGCGGGAGCCTCGGGCACCATCGGCAAACTAGGCCCTTGGTC
* * **
20883128 GCGTGGGAGCCTCGGAAACCATCGGCAAACTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAAACTAGGCCCTTGGTC
* ** * * ** *
20883171 GTGTGGGAGCCTCGAACACCATCGGC-ACCTCGGTGCTATGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCAAACTAGGCCCT-TGGTC
* ** * ** *
20883213 GTGCAGGAGCCTCGTACACTATTAGCAACCTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAAACTAGGCCCTTGGTC
* ** * * * **
20883256 GTGCGGGAGCGTCAAGCACCATCGAC-ACCTTGGTGCTTGGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCAAACTAGGCCCTTGG-TC
* * *
20883298 GTGCGGGAACCTCAGACACCATCGGC-AACATAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAAAC-TAGGCCCTTGGTC
* * * ** *
20883341 GTGCGAGAGCCTCGGGCACCATCGGC-ACCTTGGTGCTATGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCAAACTAGGCCCT-TGGTC
* * * ** * * *
20883383 GTGAGAGAGCCTCGGACACTGTCGGCAACCTAGGGCATTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAAACTAGGCCCTTGGTC
* * * * * *
20883426 ATACGGGAGCCTCAGACACCATCGGCAAACTAGGACTTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAAACTAGGCCCTTGGTC
* * * *
20883469 GTGCGAGACCCTCGGGCACCATCGGTAACCTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAAACTAGGCCCTTGGTC
* * * * ** *
20883512 GTGCGAGAGCCTCGGGCACCGTCGGC-ACCTGGGTGCTCGGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCAAACTAGGCCCTTGG-TC
* * ** * *
20883554 GTCCGGGATCCTTAGACACCATCGGCAATCTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAAACTAGGCCCTTGGTC
* *
20883597 TTGCGGGAGCCTCGGGCACCATCGGC-TACTTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAAAC-TAGGCCCTTGGTC
* ** * * * * *
20883640 GTGTGAAAGCCTCGGGCACCATCGGC-ACCTGGGCGCTCAGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCAAACTAGGCCCT-TGGTC
* *
20883682 GTGCGGGAGCCTCGGACACCATCGACAAACTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAAACTAGGCCCTTGGTC
* * * * * *** *
20883725 GTACGGGAGCCTCGGGTACCATTGG-AACCTCGGTGTTATGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCAAACTAGGCCCT-TGGTC
* * * * * ** *
20883767 GTGCGAGAACATCAGACACTGTCTG-AAACCTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAAA-CTAGGCCCTTGGTC
* * * * *
20883810 GTGTGGGAGCCTCAGACACCATTGGCAAACTAGGCCCTTGGTT
1 GTGCGGGAGCCTCGGGCACCATCGGCAAACTAGGCCCTTGGTC
* * * * * ** **
20883853 GTGCGAGAGCCTCGGACACCATCGAC-ACCTCGGTGCTATAAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCAAACTAGGCCCT-TGGTC
* * * ** * *
20883895 GTGCGGAAGCCTCAGACACTGTAGGCAACCTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAAACTAGGCCCTTGGTC
* * * * **
20883938 GTGCGGGAGCGTCGAGCACCATC-G-ACACTTATGTACTTGGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCAAAC-TAGGCCCTTGG-TC
* * * * **
20883980 GTGCAGGAACCCCGGACACCATCAAC-AACATAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAAAC-TAGGCCCTTGGTC
* * *** * *** *
20884023 GTGCGAGAGCCTCAGGCACCATCGG-TGCCTTGATGCTATGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCAAACTAGGCCCT-TGGTC
* * * ** * * **
20884065 GTACGAGAGCCTTGGAG-ACTGTTGGCAACCTAGGCCCTACGTC
1 GTGCGGGAGCCTCGG-GCACCATCGGCAAACTAGGCCCTTGGTC
* * * **
20884108 GTACGGGAGCCTCGGACACCATCAGCAAACTAGGCTTTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAAACTAGGCCCTTGGTC
* * * * ** *
20884151 GT-CTGGGAGCTTCAGGCACCATCGGC-ACCTGGGCGGTCGGAT-
1 GTGC-GGGAGCCTCGGGCACCATCGGCAAACTAGGCCCTTGG-TC
* * ** * * **
20884193 GTCCGGGAGCCCCGAACATCAGCGGCAAACTAAACCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAAACTAGGCCCTTGGTC
* ** * * *
20884236 ATGAAGGAGCCTC-AGCACCATCGG-TAACTAGGCCCCTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAAACTAGGCCCTTGGTC
* * * * * * *
20884277 ATGCAGGAGCCTTGGGCACCGTCGGCAAAATA-GCCCTTTGTG
1 GTGCGGGAGCCTCGGGCACCATCGGCAAACTAGGCCCTTGGTC
* * * * **
20884319 GTGCGAGTA-CCTCGGGTATCATCGGC-ACCTAGGTGCTTGGAT-
1 GTGCG-GGAGCCTCGGGCACCATCGGCAAACTAGGCCCTTGG-TC
***
20884361 GTGCGGGAGCCTCAAACACCATCGGCAAACTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAAACTAGGCCCTTGGTC
* * * * ** * *
20884404 ATGAGGGAGCCTCGGGCACTATCGGCAACCTAGGTTCTCAGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCAAACTAGGCCCT-TGGTC
* * * *
20884447 GTGCTGGAGCCTCGGACACCATCGGTAAACTAGGCACTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAAACTAGGCCCTTGGTC
* * * *
20884490 TTG-GAGGAGCCTCTGGCACTATCGGC-TACTAGGCCCTTGGTC
1 GTGCG-GGAGCCTCGGGCACCATCGGCAAACTAGGCCCTTGGTC
***** * * * * * * * *
20884532 GTATAAAAGCATCAGGTACCATCGAC-ACCTGGGCGCTCGGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCAAACTAGGCCCTTGG-TC
* * * * ** *
20884574 GTCCGGGAGCCTCGGGTACCATCGGC-ACCTCGGTGCTATGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCAAACTAGGCCCT-TGGTC
* * * * * * **
20884616 GTGCGGGAGCCTTGAGCACCACCGAC-ACCTTGG-TGTTGGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCAAACTAGGCCCTTGG-TC
* * * * * *
20884657 GTGCGGGAACCTCTGACAGCATAGGCAACCTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAAACTAGGCCCTTGGTC
* * * **
20884700 GTGCGAGAGCCTCGGGCACCATC-GCCACCTAGG-TGTTCGGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCAAACTAGGCCCTT-GG-TC
* * * **
20884742 GTACGGGAGCCTCGGACACAATCGGCAAACTAAACCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAAACTAGGCCCTTGGTC
* *
20884785 GTGCGGGATCCTCAGGCACCA
1 GTGCGGGAGCCTCGGGCACCA
20884806 CCGGTAAAAC
Statistics
Matches: 1645, Mismatches: 585, Indels: 174
0.68 0.24 0.07
Matches are distributed among these distances:
40 2 0.00
41 55 0.03
42 653 0.40
43 924 0.56
44 11 0.01
ACGTcount: A:0.21, C:0.30, G:0.30, T:0.20
Consensus pattern (43 bp):
GTGCGGGAGCCTCGGGCACCATCGGCAAACTAGGCCCTTGGTC
Found at i:20882627 original size:85 final size:85
Alignment explanation
Indices: 20882505--20884515 Score: 388
Period size: 85 Copynumber: 23.6 Consensus size: 85
20882495 GACCCTCGGG
* * * * * *
20882505 CACCATCGAC-AACTTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCAACGGCACCTGGGCGCT
1 CACCATCGGCAAAC-TAGGCCCTTGGTCATGCGGGAGCCTCGGGCACCATCGGCACCTAGGTGCT
*
20882569 CGGATGTGCGGGAGCCTCAGA
65 AGGATGTGCGGGAGCCTCAGA
* * * * * * *
20882590 CAGCATCAGCAAACTAGGCCCTTGGTCATGCGGGAGCCTCAGACACCATTGGCACCTCGGTACTA
1 CACCATCGGCAAACTAGGCCCTTGGTCATGCGGGAGCCTCGGGCACCATCGGCACCTAGGTGCTA
* *
20882655 TGATGTGCGGGAGCCTCAGG
66 GGATGTGCGGGAGCCTCAGA
* * * ** * *
20882675 CACCACCGGCAACCTAGGCCCCTGGTCATATGAGG-GCCTTGGGCACCATCGGCTA-CTAGATGC
1 CACCATCGGCAAACTAGGCCCTTGGTCATGCG-GGAGCCTCGGGCACCATCGGC-ACCTAGGTGC
*
20882738 TTGGATGTGCGGGAGCCT-AGAA
64 TAGGATGTGCGGGAGCCTCAG-A
* * * * * * * **
20882760 CACCATCGGTAAACTAGGCCCTTGATCGTGCGGGACCCTCGAGCACCTTCGACAACCTAGGCCCT
1 CACCATCGGCAAACTAGGCCCTTGGTCATGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGTGCT
*** * * * *
20882825 -TTTTCGTGCGAGATCCTCGGG
65 AGGAT-GTGCGGGAGCCTCAGA
* * * * * * *** * * * **
20882846 CACTAACGGC--ACTTGGGCGCTCGGAT-GTGCAAAAGCCTAGGACACCATCGGCAAACTAGGCC
1 CACCATCGGCAAAC-TAGGCCCTTGG-TCATGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGTG
* * * * *
20882908 CTTGG-TCTTGCAGGAGCCTCGGG
63 CTAGGAT-GTGCGGGAGCCTCAGA
* * * * * ** * *
20882931 CACCATCCGCTACCTAGGCCCTTGGTCGTGTGAAAGCCTCGGGCACCATCGGCACCTGGGAGCTC
1 CACCATCGGCAAACTAGGCCCTTGGTCATGCGGGAGCCTCGGGCACCATCGGCACCTAGGTGCT-
*
20882996 A-GATGTGTGGGAGCCTCAGA
65 AGGATGTGCGGGAGCCTCAGA
** * ** * *
20883016 CACCATCGAAAAACTAGGCCCTTGGTTATGCGGGAGCCT-GAAACACCATTGGCACCTCGGTGCT
1 CACCATCGGCAAACTAGGCCCTTGGTCATGCGGGAGCCTCG-GGCACCATCGGCACCTAGGTGCT
* *
20883080 ATGATGTGCAGGAGCCTCAGA
65 AGGATGTGCGGGAGCCTCAGA
** * * * ** * **
20883101 CACTGTCGGTAACCTAAGCCCTTGGT--TGCGTGGGAGCCTCGGAAACCATCGGCAAACTAGGCC
1 CACCATCGGCAAACTAGGCCCTTGGTCATGC--GGGAGCCTCGGGCACCATCGGC-ACCTAGGTG
* *
20883164 CTTGG-TCGTGTGGGAGCCTC-GAA
63 CTAGGAT-GTGCGGGAGCCTCAG-A
* * ** * * * ** * ** **
20883187 CACCATCGGC-ACCTCGGTGCTATGAT-GTGCAGGAGCCTCGTACACTATTAGCAACCTAGGCCC
1 CACCATCGGCAAACTAGGCCCT-TGGTCATGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGTGC
* *
20883250 TTGG-TCGTGCGGGAGCGTCA-A
64 TAGGAT-GTGCGGGAGCCTCAGA
* * * ** * * * * * **
20883271 GCACCATCGAC-ACCTTGGTGCTTGGAT-GTGCGGGAACCTCAGACACCATCGGCAACATAGGCC
1 -CACCATCGGCAAACTAGGCCCTTGG-TCATGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGTG
* * * *
20883334 CTTGG-TCGTGCGAGAGCCTCGGG
63 CTAGGAT-GTGCGGGAGCCTCAGA
* * ** * * * * * **
20883357 CACCATCGGC-ACCTTGGTGCTATGAT-GTGAGAGAGCCTCGGACACTGTCGGCAACCTAGG-GC
1 CACCATCGGCAAACTAGGCCCT-TGGTCATGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGTGC
* * *
20883419 ATTGG-TCATACGGGAGCCTCAGA
64 -TAGGAT-GTGCGGGAGCCTCAGA
* * * * * * **
20883442 CACCATCGGCAAACTAGGACTTTGGTCGTGCGAGACCCTCGGGCACCATCGGTAACCTAGGCCCT
1 CACCATCGGCAAACTAGGCCCTTGGTCATGCGGGAGCCTCGGGCACCATCGG-CACCTAGGTGCT
* * * *
20883507 TGG-TCGTGCGAGAGCCTCGGG
65 AGGAT-GTGCGGGAGCCTCAGA
* * * ** * * ** * * **
20883528 CACCGTCGGC-ACCTGGGTGCTCGG--ATGTCCGGGATCCTTAGACACCATCGGCAATCTAGGCC
1 CACCATCGGCAAACTAGGCCCTTGGTCATG--CGGGAGCCTCGGGCACCATCGGC-ACCTAGGTG
* * * *
20883590 CTTGG-TCTTGCGGGAGCCTCGGG
63 CTAGGAT-GTGCGGGAGCCTCAGA
* * * ** * *
20883613 CACCATCGGC-TACTTAGGCCCTTGGTCGTGTGAAAGCCTCGGGCACCATCGGCACCTGGGCGCT
1 CACCATCGGCAAAC-TAGGCCCTTGGTCATGCGGGAGCCTCGGGCACCATCGGCACCTAGGTGCT
*
20883677 CA-GATGTGCGGGAGCCTCGGA
65 -AGGATGTGCGGGAGCCTCAGA
* * * * * * * *
20883698 CACCATCGACAAACTAGGCCCTTGGTCGTACGGGAGCCTCGGGTACCATTGGAACCTCGGTGTTA
1 CACCATCGGCAAACTAGGCCCTTGGTCATGCGGGAGCCTCGGGCACCATCGGCACCTAGGTGCTA
* * * *
20883763 TGATGTGCGAGAACATCAGA
66 GGATGTGCGGGAGCCTCAGA
** * * * * * * * **
20883783 CACTGTCTG-AAACCTAGGCCCTTGGTCGTGTGGGAGCCTCAGACACCATTGGCAAACTAGGCCC
1 CACCATCGGCAAA-CTAGGCCCTTGGTCATGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGTGC
* * * *
20883847 TTGGTTGTGCGAGAGCCTCGGA
64 TAGGATGTGCGGGAGCCTCAGA
* * * ** ** * * * * ** * **
20883869 CACCATCGAC-ACCTCGGTGCTATAAT-GTGCGGAAGCCTCAGACACTGTAGGCAACCTAGGCCC
1 CACCATCGGCAAACTAGGCCCT-TGGTCATGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGTGC
* *
20883932 TTGG-TCGTGCGGGAGCGTC-GA
64 TAGGAT-GTGCGGGAGCCTCAGA
* * ** * * * * * ** * *
20883953 GCACCATC-G-ACACTTATGTACTTGGAT-GTGCAGGAACCCCGGACACCATCAACAACATAGGC
1 -CACCATCGGCAAAC-TAGGCCCTTGG-TCATGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGT
* * * *
20884015 CCTTGG-TCGTGCGAGAGCCTCAGG
62 GCTAGGAT-GTGCGGGAGCCTCAGA
*** * *** * * * * * ** * **
20884039 CACCATCGG-TGCCTTGATGCTATGAT-GTACGAGAGCCTTGGAG-ACTGTTGGCAACCTAGGCC
1 CACCATCGGCAAACTAGGCCCT-TGGTCATGCGGGAGCCTCGG-GCACCATCGGC-ACCTAGGTG
* * *
20884101 CTACG-TCGTACGGGAGCCTCGGA
63 CTAGGAT-GTGCGGGAGCCTCAGA
* ** * * * * * *
20884124 CACCATCAGCAAACTAGGCTTTTGGTCGT-CTGGGAGCTTCAGGCACCATCGGCACCTGGGCGGT
1 CACCATCGGCAAACTAGGCCCTTGGTCATGC-GGGAGCCTCGGGCACCATCGGCACCTAGGTGCT
* * *
20884188 CGGATGTCCGGGAGCC-CCGAA
65 AGGATGTGCGGGAGCCTCAG-A
* * ** ** * * * **
20884209 CATCAGCGGCAAACTAAACCCTTGGTCATGAAGGAGCCTC-AGCACCATCGGTAACTAGGCCCCT
1 CACCATCGGCAAACTAGGCCCTTGGTCATGCGGGAGCCTCGGGCACCATCGGCACCTAGG-TGCT
* * ** *
20884273 -GG-TCATGCAGGAGCCTTGGG
65 AGGAT-GTGCGGGAGCCTCAGA
* * * ** * * *
20884293 CACCGTCGGCAAAATA-GCCCTTTGTGGTGCGAGTA-CCTCGGGTATCATCGGCACCTAGGTGCT
1 CACCATCGGCAAACTAGGCCCTTGGTCATGCG-GGAGCCTCGGGCACCATCGGCACCTAGGTGCT
* *
20884356 TGGATGTGCGGGAGCCTCAAA
65 AGGATGTGCGGGAGCCTCAGA
* * *
20884377 CACCATCGGCAAACTAGGCCCTTGGTCATGAGGGAGCCTCGGGCACTATCGGCAACCTAGGTTCT
1 CACCATCGGCAAACTAGGCCCTTGGTCATGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGTGCT
* *
20884442 CA-GATGTGCTGGAGCCTCGGA
65 -AGGATGTGCGGGAGCCTCAGA
* * * * *
20884463 CACCATCGGTAAACTAGGCACTTGGTCTTG-GAGGAGCCTCTGGCACTATCGGC
1 CACCATCGGCAAACTAGGCCCTTGGTCATGCG-GGAGCCTCGGGCACCATCGGC
20884516 TACTAGGCCC
Statistics
Matches: 1417, Mismatches: 431, Indels: 155
0.71 0.22 0.08
Matches are distributed among these distances:
83 21 0.01
84 104 0.07
85 978 0.69
86 306 0.22
87 6 0.00
88 2 0.00
ACGTcount: A:0.21, C:0.30, G:0.30, T:0.20
Consensus pattern (85 bp):
CACCATCGGCAAACTAGGCCCTTGGTCATGCGGGAGCCTCGGGCACCATCGGCACCTAGGTGCTA
GGATGTGCGGGAGCCTCAGA
Found at i:20882637 original size:128 final size:128
Alignment explanation
Indices: 20882365--20882638 Score: 334
Period size: 128 Copynumber: 2.1 Consensus size: 128
20882355 TAAGATGTGT
** **
20882365 GGGAGCCTCAGACACCATCGGTAACTTAGGCCCCTACTCGTGCGAGAGCCTCGGGCACCATTGGC
1 GGGAGCCTCAGACACCATCGACAACTTAGGCCCCTACTCGTGCGAGAGCCTCGGGCACCAACGGC
* * * ** *
20882430 GCCTAAATGCTTAGATGTGCGGGAGCCTCGAACACCATTGGCAAACTAGGCCCTTGGTCGTGC
66 ACCTAAACGCTCAGATGTGCGGGAGCCTCGAACACCATCAGCAAACTAGGCCCTTGGTCATGC
* * * * * **
20882493 AGGACCCTCGGGCACCATCGACAACTTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCAACGGC
1 GGGAGCCTCAGACACCATCGACAACTTAGGCCCCTACTCGTGCGAGAGCCTCGGGCACCAACGGC
*** * *
20882558 ACCTGGGCGCTCGGATGTGCGGGAGCCTC-AGACAGCATCAGCAAACTAGGCCCTTGGTCATGC
66 ACCTAAACGCTCAGATGTGCGGGAGCCTCGA-ACACCATCAGCAAACTAGGCCCTTGGTCATGC
20882621 GGGAGCCTCAGACACCAT
1 GGGAGCCTCAGACACCAT
20882639 TGGCACCTCG
Statistics
Matches: 119, Mismatches: 26, Indels: 2
0.81 0.18 0.01
Matches are distributed among these distances:
127 1 0.01
128 118 0.99
ACGTcount: A:0.21, C:0.32, G:0.30, T:0.17
Consensus pattern (128 bp):
GGGAGCCTCAGACACCATCGACAACTTAGGCCCCTACTCGTGCGAGAGCCTCGGGCACCAACGGC
ACCTAAACGCTCAGATGTGCGGGAGCCTCGAACACCATCAGCAAACTAGGCCCTTGGTCATGC
Found at i:20882694 original size:213 final size:210
Alignment explanation
Indices: 20882298--20883622 Score: 902
Period size: 213 Copynumber: 6.2 Consensus size: 210
20882288 CGTGCCATTC
* ** * *
20882298 CGGCAACATAGGCCCTTGGTTGTGCGGGAGCCTCGGGCACCATCTCCACCTTGGTGCTAAGATGT
1 CGGCAAC-TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTGGGCGCTAAGATGT
* ** * ** * * *
20882363 GTGGGAGCCTCAGACACCATCGGTAACTTAGGCCCCTACTCGTGCGAGAGCCTCGGGCACCATTG
65 GCGGGAGCCTCAGACACCATCGCAAAC-TAGGCCCTTGGTCGTGCGGGAGCCTCAGACACCATTG
* *** * *
20882428 GCGCCTAAATGCTTAGATGTGCGGGAGCCTC-GAACACCATTGGCAAACTAGGCCCTTGGTCGTG
129 GCACCTCGGTGCTT-GATGTGCGGGAGCCTCAG-ACACCATCGGCAACCTAGGCCCTTGGTCGTG
*
20882492 CAGGACCCTCGGGCACCAT
192 CAGGAGCCTCGGGCACCAT
* * * **
20882511 CGACAACTTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCAACGGCACCTGGGCGCTCGGATGT
1 CGGCAAC-TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTGGGCGCTAAGATGT
* *
20882576 GCGGGAGCCTCAGACAGCATCAGCAAACTAGGCCCTTGGTCATGCGGGAGCCTCAGACACCATTG
65 GCGGGAGCCTCAGACACCATC-GCAAACTAGGCCCTTGGTCGTGCGGGAGCCTCAGACACCATTG
* * * * *
20882641 GCACCTCGGTACTATGATGTGCGGGAGCCTCAGGCACCACCGGCAACCTAGGCCCCTGGTCATAT
129 GCACCTCGGTGCT-TGATGTGCGGGAGCCTCAGACACCATCGGCAACCTAGGCCCTTGGTC--GT
*
20882706 G-AGG-GCCTTGGGCACCAT
191 GCAGGAGCCTCGGGCACCAT
* *** * ** * * * * *
20882724 CGGCTACTAGATGCTTGGAT-GTGCGGGAGCCTAGAACACCATCGGTAAACTAGGCCCT-TGATC
1 CGGCAACTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGG-CACCTGGGCGCTAAGAT-
* * * ** * * * * *
20882787 GTGCGGGACCCTC-GAGCACCTTCGACAACCTAGGCCCTTTTTCGTGCGAGATCCTCGGGCACTA
63 GTGCGGGAGCCTCAGA-CACCATCG-CAAACTAGGCCCTTGGTCGTGCGGGAGCCTCAGACACCA
** * * * * *** *
20882851 ACGGCACTTGGGCGCTCGGATGTGCAAAAGCCT-AGGACACCATCGGCAAACTAGGCCCTTGGTC
126 TTGGCACCTCGGTGCT-TGATGTGCGGGAGCCTCA-GACACCATCGGCAACCTAGGCCCTTGGTC
*
20882915 TTGCAGGAGCCTCGGGCACCAT
189 GTGCAGGAGCCTCGGGCACCAT
* * * ** * *
20882937 CCGCTACCTAGGCCCTTGGTCGTGTGAAAGCCTCGGGCACCATCGGCACCTGGGAGCTCAGATGT
1 CGGC-AACTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTGGGCGCTAAGATGT
* * ** * *
20883002 GTGGGAGCCTCAGACACCATCGAAAAACTAGGCCCTTGGTTATGCGGGAGCCTGAAACACCATTG
65 GCGGGAGCCTCAGACACCATCG-CAAACTAGGCCCTTGGTCGTGCGGGAGCCTCAGACACCATTG
* ** * *
20883067 GCACCTCGGTGCTATGATGTGCAGGAGCCTCAGACACTGTCGGTAACCTAAGCCCTTGGTTGCGT
129 GCACCTCGGTGCT-TGATGTGCGGGAGCCTCAGACACCATCGGCAACCTAGGCCCTTGG-T-CGT
**
20883132 G--GGAGCCTCGGAAACCAT
191 GCAGGAGCCTCGGGCACCAT
* ** * * *
20883150 CGGCAAACTAGGCCCTTGGTCGTGTGGGAGCCTCGAACACCATCGGCACCTCGGTGCTATGATGT
1 CGGC-AACTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTGGGCGCTAAGATGT
* * * * *
20883215 GCAGGAGCCTC-GTACACTATTAGCAACCTAGGCCCTTGGTCGTGCGGGAGCGTCA-AGCACCAT
65 GCGGGAGCCTCAG-ACACCA-TCGCAAACTAGGCCCTTGGTCGTGCGGGAGCCTCAGA-CACCAT
* * * * *
20883278 CGACACCTTGGTGCTTGGATGTGCGGGAACCTCAGACACCATCGGCAACATAGGCCCTTGGTCGT
127 TGGCACCTCGGTGCTT-GATGTGCGGGAGCCTCAGACACCATCGGCAACCTAGGCCCTTGGTCGT
20883343 GC-GAGAGCCTCGGGCACCAT
191 GCAG-GAGCCTCGGGCACCAT
* * ** * * * * ** * * *
20883363 CGGCACCTTGGTGCTATGAT-GTGAGAGAGCCTCGGACACTGTCGGCAACCTAGG-GC-ATTGGT
1 CGGCAACTAGGCCCT-TGGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTGGGCGCTA-AGAT
* * * * * * * *
20883425 CATACGGGAGCCTCAGACACCATCGGCAAACTAGGACTTTGGTCGTGCGAGACCCTCGGGCACCA
63 -GTGCGGGAGCCTCAGACACCATC-GCAAACTAGGCCCTTGGTCGTGCGGGAGCCTCAGACACCA
* * * ** * * * * * * ** *
20883490 TCGGTAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCGTCGGC-ACCTGGGTGCTCGGAT
126 TTGG-CACCTCGGTGCTTGAT-GTGCGGGAGCCTCAGACACCATCGGCAACCTAGGCCCTTGG-T
* * * ** *
20883554 -GTCCGGGATCCTTAGACACCAT
188 CGTGCAGGAGCCTCGGGCACCAT
*
20883576 CGGCAATCTAGGCCCTTGGTCTTGCGGGAGCCTCGGGCACCATCGGC
1 CGGCAA-CTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC
20883623 TACTTAGGCC
Statistics
Matches: 853, Mismatches: 220, Indels: 77
0.74 0.19 0.07
Matches are distributed among these distances:
211 7 0.01
212 77 0.09
213 659 0.77
214 105 0.12
215 5 0.01
ACGTcount: A:0.20, C:0.30, G:0.30, T:0.19
Consensus pattern (210 bp):
CGGCAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTGGGCGCTAAGATGTG
CGGGAGCCTCAGACACCATCGCAAACTAGGCCCTTGGTCGTGCGGGAGCCTCAGACACCATTGGC
ACCTCGGTGCTTGATGTGCGGGAGCCTCAGACACCATCGGCAACCTAGGCCCTTGGTCGTGCAGG
AGCCTCGGGCACCAT
Found at i:20882845 original size:298 final size:298
Alignment explanation
Indices: 20882306--20882937 Score: 827
Period size: 298 Copynumber: 2.1 Consensus size: 298
20882296 TCCGGCAACA
** * * *
20882306 TAGGCCCTTGGTTGTGCGGGAGCCTCGGGCACCATCTCCACCTTGGTGCTAAGATGTGTGGGAGC
1 TAGGCCCTTGGTCATGCGGGAGCCTCGGGCACCATCTCCACCTCGGTACTAAGATGTGCGGGAGC
* * * * * * *
20882371 CTCAGACACCATCGGTAACTTAGGCCCCTACTCGTGCGAGAGCCTCGGGCACCATTGGCGCCTAA
66 CTCAGACACCACCGGCAACCTAGGCCCCTACTCATACGAGAGCCTCGGGCACCATCGGCGACTAA
* * *
20882436 ATGCTTAGATGTGCGGGAGCCTCGAACACCATTGGCAAACTAGGCCCTTGGTCGTGCAGGACCCT
131 ATGCTTAGATGTGCGGGAGCCTAGAACACCATCGGCAAACTAGGCCCTTGATCGTGCAGGACCCT
* *
20882501 CGGGCACCATCGACAACTTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCAACGGCACCTGGGC
196 CGAGCACCATCGACAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCAACGGCACCTGGGC
*** *
20882566 GCTCGGATGTGCGGGAGCCTCA-GACAGCATCAGCAAAC
261 GCTCGGATGTGCAAAAGCCT-AGGACACCATCAGCAAAC
* * * *
20882604 TAGGCCCTTGGTCATGCGGGAGCCTCAGACACCAT-TGGCACCTCGGTACTATGATGTGCGGGAG
1 TAGGCCCTTGGTCATGCGGGAGCCTCGGGCACCATCT-CCACCTCGGTACTAAGATGTGCGGGAG
* ** * * * *
20882668 CCTCAGGCACCACCGGCAACCTAGGCCCCTGGTCATATGAGGGCCTTGGGCACCATCGGCTACTA
65 CCTCAGACACCACCGGCAACCTAGGCCCCTACTCATACGAGAGCCTCGGGCACCATCGGCGACTA
* * * *
20882733 GATGCTTGGATGTGCGGGAGCCTAGAACACCATCGGTAAACTAGGCCCTTGATCGTGCGGGACCC
130 AATGCTTAGATGTGCGGGAGCCTAGAACACCATCGGCAAACTAGGCCCTTGATCGTGCAGGACCC
* ** * * *
20882798 TCGAGCACCTTCGACAACCTAGGCCCTTTTTCGTGCGAGATCCTCGGGCACTAACGGCACTTGGG
195 TCGAGCACCATCGACAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCAACGGCACCTGGG
*
20882863 CGCTCGGATGTGCAAAAGCCTAGGACACCATCGGCAAAC
260 CGCTCGGATGTGCAAAAGCCTAGGACACCATCAGCAAAC
* *
20882902 TAGGCCCTTGGTCTTGCAGGAGCCTCGGGCACCATC
1 TAGGCCCTTGGTCATGCGGGAGCCTCGGGCACCATC
20882938 CGCTACCTAG
Statistics
Matches: 284, Mismatches: 47, Indels: 5
0.85 0.14 0.01
Matches are distributed among these distances:
297 2 0.01
298 282 0.99
ACGTcount: A:0.20, C:0.31, G:0.30, T:0.19
Consensus pattern (298 bp):
TAGGCCCTTGGTCATGCGGGAGCCTCGGGCACCATCTCCACCTCGGTACTAAGATGTGCGGGAGC
CTCAGACACCACCGGCAACCTAGGCCCCTACTCATACGAGAGCCTCGGGCACCATCGGCGACTAA
ATGCTTAGATGTGCGGGAGCCTAGAACACCATCGGCAAACTAGGCCCTTGATCGTGCAGGACCCT
CGAGCACCATCGACAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCAACGGCACCTGGGC
GCTCGGATGTGCAAAAGCCTAGGACACCATCAGCAAAC
Found at i:20883040 original size:128 final size:127
Alignment explanation
Indices: 20882660--20883054 Score: 395
Period size: 128 Copynumber: 3.1 Consensus size: 127
20882650 TACTATGATG
* * * * * *
20882660 TGCGGGAGCCTCAGGCACCA-CCGGCAACCTAGGCCCCTGGTCATATGAGGGCCTTGGGCACCAT
1 TGCGGGAGCCTCGGGCACCATCC-GCAACCTAGGCCCTTGGTCGTGTGAGAGCCTCGGGCACCAT
* * * *
20882724 CGGCTA-CT-AGATGCTTGGATGTGCGGGAGCCTAGAACACCATCGGTAAACTAGGCCCTTGATC
65 CGGC-ACCTGGGA-GCTCGGATGTGCGGGAGCCTAG-ACACCATCGGAAAACTAGGCCCTTGGTC
*
20882787 G
127 T
* * * ** * * * *
20882788 TGCGGGACCCTCGAGCACC-TTCGACAACCTAGGCCCTTTTTCGTGCGAGATCCTCGGGCACTAA
1 TGCGGGAGCCTCGGGCACCATCCG-CAACCTAGGCCCTTGGTCGTGTGAGAGCCTCGGGCACCAT
* * *** *
20882852 CGGCACTTGGGCGCTCGGATGTGCAAAAGCCTAGGACACCATCGGCAAACTAGGCCCTTGGTCT
65 CGGCACCTGGGAGCTCGGATGTGCGGGAGCCTA-GACACCATCGGAAAACTAGGCCCTTGGTCT
* * *
20882916 TGCAGGAGCCTCGGGCACCATCCGCTACCTAGGCCCTTGGTCGTGTGAAAGCCTCGGGCACCATC
1 TGCGGGAGCCTCGGGCACCATCCGCAACCTAGGCCCTTGGTCGTGTGAGAGCCTCGGGCACCATC
* * *
20882981 GGCACCTGGGAGCTCAGATGTGTGGGAGCCTCAGACACCATCGAAAAACTAGGCCCTTGGT-T
66 GGCACCTGGGAGCTCGGATGTGCGGGAGCCT-AGACACCATCGGAAAACTAGGCCCTTGGTCT
20883043 ATGCGGGAGCCT
1 -TGCGGGAGCCT
20883055 GAAACACCAT
Statistics
Matches: 212, Mismatches: 47, Indels: 16
0.77 0.17 0.06
Matches are distributed among these distances:
127 3 0.01
128 203 0.96
129 6 0.03
ACGTcount: A:0.21, C:0.31, G:0.30, T:0.19
Consensus pattern (127 bp):
TGCGGGAGCCTCGGGCACCATCCGCAACCTAGGCCCTTGGTCGTGTGAGAGCCTCGGGCACCATC
GGCACCTGGGAGCTCGGATGTGCGGGAGCCTAGACACCATCGGAAAACTAGGCCCTTGGTCT
Found at i:20883243 original size:128 final size:128
Alignment explanation
Indices: 20883002--20883254 Score: 357
Period size: 128 Copynumber: 2.0 Consensus size: 128
20882992 GCTCAGATGT
* * *
20883002 GTGGGAGCCTCAGACACCATCGAAAAACTAGGCCCTTGGTTATGCGGGAGCCTGAAACACCATTG
1 GTGGGAGCCTCAGAAACCATCGAAAAACTAGGCCCTTGGTCATGCGGGAGCCTGAAACACCATCG
* * *
20883067 GCACCTCGGTGCTATGATGTGCAGGAGCCTCAGACACTGTCGGTAACCTAAGCCCTTGGTTGC
66 GCACCTCGGTGCTATGATGTGCAGGAGCCTCAGACACTATCAGCAACCTAAGCCCTTGGTTGC
* ** * *
20883130 GTGGGAGCCTCGGAAACCATCGGCAAACTAGGCCCTTGGTCGTGTGGGAGCCTCG-AACACCATC
1 GTGGGAGCCTCAGAAACCATCGAAAAACTAGGCCCTTGGTCATGCGGGAGCCT-GAAACACCATC
* *
20883194 GGCACCTCGGTGCTATGATGTGCAGGAGCCTC-GTACACTATTAGCAACCTAGGCCCTTGGT
65 GGCACCTCGGTGCTATGATGTGCAGGAGCCTCAG-ACACTATCAGCAACCTAAGCCCTTGGT
20883255 CGTGCGGGAG
Statistics
Matches: 110, Mismatches: 13, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
127 1 0.01
128 108 0.98
129 1 0.01
ACGTcount: A:0.22, C:0.28, G:0.29, T:0.21
Consensus pattern (128 bp):
GTGGGAGCCTCAGAAACCATCGAAAAACTAGGCCCTTGGTCATGCGGGAGCCTGAAACACCATCG
GCACCTCGGTGCTATGATGTGCAGGAGCCTCAGACACTATCAGCAACCTAAGCCCTTGGTTGC
Found at i:20883351 original size:128 final size:128
Alignment explanation
Indices: 20883237--20884600 Score: 646
Period size: 128 Copynumber: 10.7 Consensus size: 128
20883227 TACACTATTA
* * ** * * *
20883237 GCAACCTAGGCCCTTGGTCGTGCGGGAGCGTCAAGCACCATCGACACCTTGGTGCTTGGATGTGC
1 GCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCACCTGGGTGCTCGGATGTGC
*
20883302 GGGAACCTCAGACACCATCGGC-AACATAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCG
66 GGGAGCCTCAGACACCATCGGCAAAC-TAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCG
* ** * * * ** * *
20883365 GC-ACCTTGGTGCTATGAT-GTGAGAGAGCCTCGGACACTGTCGGCAACCTAGG-GCATTGG-TC
1 GCAACCTAGGCCCT-TGGTCGTGCGAGAGCCTCGGGCACCATCGGC-ACCTGGGTGC-TCGGAT-
* * * * *
20883426 ATACGGGAGCCTCAGACACCATCGGCAAACTAGGACTTTGGTCGTGCGAGACCCTCGGGCACCAT
62 GTGCGGGAGCCTCAGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCAT
20883491 CG
127 CG
* * *
20883493 GTAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCGTCGGCACCTGGGTGCTCGGATGTCC
1 GCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCACCTGGGTGCTCGGATGTGC
* * * * *
20883558 GGGATCCTTAGACACCATCGGCAATCTAGGCCCTTGGTCTTGCGGGAGCCTCGGGCACCATCG
66 GGGAGCCTCAGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCG
* * * * * *
20883621 GCTACTTAGGCCCTTGGTCGTGTGAAAGCCTCGGGCACCATCGGCACCTGGGCGCTCAGATGTGC
1 GCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCACCTGGGTGCTCGGATGTGC
* * * * * *
20883686 GGGAGCCTCGGACACCATCGACAAACTAGGCCCTTGGTCGTACGGGAGCCTCGGGTACCATTG
66 GGGAGCCTCAGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCG
* *** * * * * * ** ** * ** *
20883749 G-AACCTCGGTGTTATGAT-GTGCGAGAACATCAGACACTGTCTGAAACCTAGGCCCTTGG-TCG
1 GCAACCTAGGCCCT-TGGTCGTGCGAGAGCCTCGGGCACCATC-GGCACCTGGGTGCTCGGAT-G
* * * *
20883811 TGTGGGAGCCTCAGACACCATTGGCAAACTAGGCCCTTGGTTGTGCGAGAGCCTCGGACACCATC
63 TGCGGGAGCCTCAGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATC
20883876 G
128 G
* * ** ** * * ** * * ** *
20883877 AC-ACCTCGGTGCTATAAT-GTGCG-GAAGCCTCAGACACTGTAGGCAACCTAGGCCCTTGG-TC
1 GCAACCTAGGCCCT-TGGTCGTGCGAG-AGCCTCGGGCACCATCGGC-ACCTGGGTGCTCGGAT-
* * * ** * * *
20883938 GTGCGGGAGCGTC-GAGCACCATC-G-ACACTTATGTACTTGGAT-GTGC-AGGAACCCCGGACA
62 GTGCGGGAGCCTCAGA-CACCATCGGCAAAC-TAGGCCCTTGG-TCGTGCGA-GAGCCTCGGGCA
*
20883998 CCATCA
123 CCATCG
* * * ** * * ** *
20884004 ACAACATAGGCCCTTGGTCGTGCGAGAGCCTCAGGCACCATCGGTGCCTTGATGCTATGATGTAC
1 GCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCACCTGGGTGCTCGGATGTGC
* ** * ** * * ** * * * *
20884069 GAGAGCCTTGGAGACTGTTGGCAACCTAGGCCCTACGTCGTACGGGAGCCTCGGACACCATCA
66 GGGAGCCTCAGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCG
* ** * * * * * *
20884132 GCAAACTAGGCTTTTGGTCGT-CTGGGAGCTTCAGGCACCATCGGCACCTGGGCGGTCGGATGTC
1 GCAACCTAGGCCCTTGGTCGTGC-GAGAGCCTCGGGCACCATCGGCACCTGGGTGCTCGGATGTG
* * * ** * * *
20884196 CGGGAGCC-CCGAACATCAGCGGCAAACTAAACCCTTGGTCATG-AAGGAGCCTC-AGCACCATC
65 CGGGAGCCTCAG-ACACCATCGGCAAACTAGGCCCTTGGTCGTGCGA-GAGCCTCGGGCACCATC
20884258 G
128 G
* * * * * ** * ** **
20884259 GTAA-CTAGGCCCCTGGTCATGC-AGGAGCCTTGGGCACCGTCGGCAAAAT-AGCCCTTTG-TGG
1 GCAACCTAGGCCCTTGGTCGTGCGA-GAGCCTCGGGCACCATCGGC-ACCTGGGTGCTCGGAT-G
* * ** * * ** * ***
20884320 TGCGAGTA-CCTCGGGTATCATCGGC-ACCTAGGTGCTTGGAT-GTGCGGGAGCCTCAAACACCA
63 TGCG-GGAGCCTCAGACACCATCGGCAAACTAGGCCCTTGG-TCGTGCGAGAGCCTCGGGCACCA
20884382 TCG
126 TCG
* * * * * * * *
20884385 GCAAACTAGGCCCTTGGTCATGAGGGAGCCTCGGGCACTATCGGCAACCTAGGTTCTCAGATGTG
1 GCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGC-ACCTGGGTGCTCGGATGTG
* * * * * * *
20884450 CTGGAGCCTCGGACACCATCGGTAAACTAGGCACTTGGTCTTG-GAGGAGCCTCTGGCACTATCG
65 CGGGAGCCTCAGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGA-GAGCCTCGGGCACCATCG
* *** * * * * * * *
20884514 GCTA-CTAGGCCCTTGGTCGTATAAAAGCATCAGGTACCATCGACACCTGGGCGCTCGGATGTCC
1 GCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCACCTGGGTGCTCGGATGTGC
* **
20884578 GGGAGCCTCGGGTACCATCGGCA
66 GGGAGCCTCAGACACCATCGGCA
20884601 CCTCGGTGCT
Statistics
Matches: 925, Mismatches: 263, Indels: 97
0.72 0.20 0.08
Matches are distributed among these distances:
125 19 0.02
126 63 0.07
127 197 0.21
128 575 0.62
129 71 0.08
ACGTcount: A:0.21, C:0.29, G:0.30, T:0.20
Consensus pattern (128 bp):
GCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCACCTGGGTGCTCGGATGTGC
GGGAGCCTCAGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCG
Found at i:20883670 original size:682 final size:681
Alignment explanation
Indices: 20882747--20884152 Score: 1957
Period size: 682 Copynumber: 2.1 Consensus size: 681
20882737 CTTGGATGTG
* * * * *
20882747 CGGGAGCCT-AGAACACCATCGGTAAACTAGGCCCTTGATCGTGCGGGACCCTCGAGCACCTTCG
1 CGGGAGCCTCAG-ACACCATCGGCAAACTAGG-CTTTGGTCGTGCGAGACCCTCGAGCACCATCG
** * * * *
20882811 ACAACCTAGGCCCTTTTTCGTGCGAGATCCTCGGGCACTAACGGCACTTGGGCGCTCGGATGTGC
64 ACAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCAACGGCACCTGGGCGCTCGGATGTCC
20882876 AAAAGCCTAGGACACCATCGGCAAACTAGGCCCTTGGTCTTGCAGGAGCCTCGGGCACCATCCGC
129 AAAAGCCTAGGACACCATCGGCAAACTAGGCCCTTGGTCTTGCAGGAGCCTCGGGCACCATCCGC
*
20882941 TACCTAGGCCCTTGGTCGTGTGAAAGCCTCGGGCACCATCGGCACCTGGGAGCTCAGATGTGTGG
194 TACCTAGGCCCTTGGTCGTGTGAAAGCCTCGGGCACCATCGGCACCTGGGAGCTCAGATGTGCGG
* * *
20883006 GAGCCTCAGACACCATCGAAAAACTAGGCCCTTGGTTATGCGGGAGCCT-GAAACACCATTGGCA
259 GAGCCTCAGACACCATCGAAAAACTAGGCCCTTGGTCATACGGGAGCCTCG-AACACCATTGGAA
* * * *
20883070 CCTCGGTGCTATGATGTGC-AGGAGCCTCAGACACTGTCGGTAACCTAAGCCCTTGGTTGCGTGG
323 CCTCGGTGCTATGATGTGCGA-GAACATCAGACACTGTCGGAAACCTAAGCCCTTGGTCGCGTGG
* * * *
20883134 GAGCCTCGGAAACCATCGGCAAACTAGGCCCTTGGTCGTGTGGGAGCCTCGAACACCATCGGCAC
387 GAGCCTCAGAAACCATCGGCAAACTAGGCCCTTGGTCGTGCGAGAGCCTCGAACACCATCGACAC
* *
20883199 CTCGGTGCTATGATGTGCAGG-AGCCTC-GTACACTATTA-GCAACCTAGGCCCTTGGTCGTGCG
452 CTCGGTGCTATAATGTGC-GGAAGCCTCAG-ACACT-GTAGGCAACCTAGGCCCTTGGTCGTGCG
* * * **
20883261 GGAGCGTCAAGCACCATCGACACCTT-GGTGCTTGGATGTGCGGGAACCTCAGACACCATCGGCA
514 GGAGCGTCAAGCACCATCGACA-CTTAGGTACTTGGATGTGCAGGAACCCCAGACACCATCAACA
* *
20883325 ACATAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCACCTTGGTGCTATGATGTGA-GA
578 ACATAGGCCCTTGGTCGTGCGAGAGCCTCAGGCACCATCGGCACCTTGATGCTATGATGT-ACGA
* **
20883389 GAGCCTCGGACACTGTCGGCAACCTAGGGCATTGGTCATA
642 GAGCCTCGGACACTGTCGGCAACCTAGGCCATACGTCATA
* *
20883429 CGGGAGCCTCAGACACCATCGGCAAACTAGGACTTTGGTCGTGCGAGACCCTCGGGCACCATCGG
1 CGGGAGCCTCAGACACCATCGGCAAACTAGG-CTTTGGTCGTGCGAGACCCTCGAGCACCATCGA
* ** * *
20883494 TAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCGTCGGCACCTGGGTGCTCGGATGTCCG
65 CAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCAACGGCACCTGGGCGCTCGGATGTCCA
** * * * *
20883559 GGATCCTTA-GACACCATCGGCAATCTAGGCCCTTGGTCTTGCGGGAGCCTCGGGCACCATCGGC
130 AAAGCC-TAGGACACCATCGGCAAACTAGGCCCTTGGTCTTGCAGGAGCCTCGGGCACCATCCGC
* *
20883623 TACTTAGGCCCTTGGTCGTGTGAAAGCCTCGGGCACCATCGGCACCTGGGCGCTCAGATGTGCGG
194 TACCTAGGCCCTTGGTCGTGTGAAAGCCTCGGGCACCATCGGCACCTGGGAGCTCAGATGTGCGG
* * * ***
20883688 GAGCCTCGGACACCATCGACAAACTAGGCCCTTGGTCGTACGGGAGCCTCGGGTACCATTGGAAC
259 GAGCCTCAGACACCATCGAAAAACTAGGCCCTTGGTCATACGGGAGCCTCGAACACCATTGGAAC
* * * *
20883753 CTCGGTGTTATGATGTGCGAGAACATCAGACACTGTCTGAAACCTAGGCCCTTGGTCGTGTGGGA
324 CTCGGTGCTATGATGTGCGAGAACATCAGACACTGTCGGAAACCTAAGCCCTTGGTCGCGTGGGA
* * * *
20883818 GCCTCAGACACCATTGGCAAACTAGGCCCTTGGTTGTGCGAGAGCCTCGGACACCATCGACACCT
389 GCCTCAGAAACCATCGGCAAACTAGGCCCTTGGTCGTGCGAGAGCCTCGAACACCATCGACACCT
20883883 CGGTGCTATAATGTGCGGAAGCCTCAGACACTGTAGGCAACCTAGGCCCTTGGTCGTGCGGGAGC
454 CGGTGCTATAATGTGCGGAAGCCTCAGACACTGTAGGCAACCTAGGCCCTTGGTCGTGCGGGAGC
* * *
20883948 GTCGAGCACCATCGACACTTATGTACTTGGATGTGCAGGAACCCCGGACACCATCAACAACATAG
519 GTCAAGCACCATCGACACTTAGGTACTTGGATGTGCAGGAACCCCAGACACCATCAACAACATAG
** *
20884013 GCCCTTGGTCGTGCGAGAGCCTCAGGCACCATCGGTGCCTTGATGCTATGATGTACGAGAGCCTT
584 GCCCTTGGTCGTGCGAGAGCCTCAGGCACCATCGGCACCTTGATGCTATGATGTACGAGAGCCTC
* * * *
20884078 GGAGACTGTTGGCAACCTAGGCCCTACGTCGTA
649 GGACACTGTCGGCAACCTAGGCCATACGTCATA
* *
20884111 CGGGAGCCTCGGACACCATCAGCAAACTAGGCTTTTGGTCGT
1 CGGGAGCCTCAGACACCATCGGCAAACTAGGC-TTTGGTCGT
20884153 CTGGGAGCTT
Statistics
Matches: 637, Mismatches: 77, Indels: 20
0.87 0.10 0.03
Matches are distributed among these distances:
681 9 0.01
682 621 0.97
683 7 0.01
ACGTcount: A:0.21, C:0.29, G:0.30, T:0.20
Consensus pattern (681 bp):
CGGGAGCCTCAGACACCATCGGCAAACTAGGCTTTGGTCGTGCGAGACCCTCGAGCACCATCGAC
AACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCAACGGCACCTGGGCGCTCGGATGTCCAA
AAGCCTAGGACACCATCGGCAAACTAGGCCCTTGGTCTTGCAGGAGCCTCGGGCACCATCCGCTA
CCTAGGCCCTTGGTCGTGTGAAAGCCTCGGGCACCATCGGCACCTGGGAGCTCAGATGTGCGGGA
GCCTCAGACACCATCGAAAAACTAGGCCCTTGGTCATACGGGAGCCTCGAACACCATTGGAACCT
CGGTGCTATGATGTGCGAGAACATCAGACACTGTCGGAAACCTAAGCCCTTGGTCGCGTGGGAGC
CTCAGAAACCATCGGCAAACTAGGCCCTTGGTCGTGCGAGAGCCTCGAACACCATCGACACCTCG
GTGCTATAATGTGCGGAAGCCTCAGACACTGTAGGCAACCTAGGCCCTTGGTCGTGCGGGAGCGT
CAAGCACCATCGACACTTAGGTACTTGGATGTGCAGGAACCCCAGACACCATCAACAACATAGGC
CCTTGGTCGTGCGAGAGCCTCAGGCACCATCGGCACCTTGATGCTATGATGTACGAGAGCCTCGG
ACACTGTCGGCAACCTAGGCCATACGTCATA
Found at i:20883720 original size:213 final size:212
Alignment explanation
Indices: 20883469--20884047 Score: 577
Period size: 213 Copynumber: 2.7 Consensus size: 212
20883459 GACTTTGGTC
* * * * * *
20883469 GTGCGAGACCCTCGGGCACCATCGGTAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCGT
1 GTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCAT
* * * * * * *
20883534 CGGCACCTGGGTGCTCGGATGTCCGGGATCCTTAGACACCATCGGCAATCTAGGCCCTTGGTCTT
66 CGGCACCTAGGTGCTAGGATGTGCGGGAACCTCAGACACCATCAGCAA-CTAGGCCCTTGGTCGT
* * * *
20883599 GCGGGAGCCTCGGGCACCATCGGC-TACTTAGGCCCTTGGTCGTGTGAAAGCCTCGGGCACCATC
130 GCGGGAGCCTCAGGCACCATCGGCAAAC-TAGGCCCTTGGTCGTGCGAAAGCCTCGGACACCATC
* * *
20883663 GGCACCTGGGCGCTCA-GAT
194 GACACCTCGGCGCT-ATAAT
* * * *
20883682 GTGCGGGAGCCTCGGACACCATCGACAAACTAGGCCCTTGGTCGTACGGGAGCCTCGGGTACCAT
1 GTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCAT
* * * * * * * ** * *
20883747 TGGAACCTCGGTGTTATGATGTGCGAGAACATCAGACACTGTCTGAAACCTAGGCCCTTGGTCGT
66 CGGCACCTAGGTGCTAGGATGTGCGGGAACCTCAGACACCATCAGCAA-CTAGGCCCTTGGTCGT
* * * * *
20883812 GTGGGAGCCTCAGACACCATTGGCAAACTAGGCCCTTGGTTGTGCGAGAGCCTCGGACACCATCG
130 GCGGGAGCCTCAGGCACCATCGGCAAACTAGGCCCTTGGTCGTGCGAAAGCCTCGGACACCATCG
*
20883877 ACACCTCGGTGCTATAAT
195 ACACCTCGGCGCTATAAT
* * ** * * *
20883895 GTGCGGAAGCCTCAGACACTGTAGGCAACCTAGGCCCTTGGTCGTGCGGGAGCGTCGAGCACCAT
1 GTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCAT
* * * * * * * * *
20883960 CGACACTTATGTACTTGGATGTGCAGGAACCCCGGACACCATCAACAACATAGGCCCTTGGTCGT
66 CGGCACCTAGGTGCTAGGATGTGCGGGAACCTCAGACACCATCAGCAAC-TAGGCCCTTGGTCGT
*
20884025 GCGAGAGCCTCAGGCACCATCGG
130 GCGGGAGCCTCAGGCACCATCGG
20884048 TGCCTTGATG
Statistics
Matches: 288, Mismatches: 75, Indels: 6
0.78 0.20 0.02
Matches are distributed among these distances:
212 2 0.01
213 284 0.99
214 2 0.01
ACGTcount: A:0.20, C:0.30, G:0.30, T:0.20
Consensus pattern (212 bp):
GTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCAT
CGGCACCTAGGTGCTAGGATGTGCGGGAACCTCAGACACCATCAGCAACTAGGCCCTTGGTCGTG
CGGGAGCCTCAGGCACCATCGGCAAACTAGGCCCTTGGTCGTGCGAAAGCCTCGGACACCATCGA
CACCTCGGCGCTATAAT
Found at i:20884752 original size:42 final size:41
Alignment explanation
Indices: 20884549--20884765 Score: 141
Period size: 42 Copynumber: 5.2 Consensus size: 41
20884539 AGCATCAGGT
* * * * *
20884549 ACCATCGACACCTGGGCGCTCGGATGTCCGGGAGCCTCGGGT
1 ACCATCGACACCTAGGTG-TTGGATGTGCGGGAGCCTCGGGC
* * * *
20884591 ACCATCGGCACCTCGGTGCTAT-GATGTGCGGGAGCCTTGAGC
1 ACCATCGACACCTAGGTG-T-TGGATGTGCGGGAGCCTCGGGC
* * * * *
20884633 ACCACCGACACCTTGGTGTTGGATGTGCGGGAACCTCTGAC
1 ACCATCGACACCTAGGTGTTGGATGTGCGGGAGCCTCGGGC
* * * ** *
20884674 AGCATAGGCAACCTAGGCCCTTGG-TCGTGCGAGAGCCTCGGGC
1 ACCATCGAC-ACCTAGG-TGTTGGAT-GTGCGGGAGCCTCGGGC
* * *
20884717 ACCATCGCCACCTAGGTGTTCGGATGTACGGGAGCCTCGGAC
1 ACCATCGACACCTAGGTGTT-GGATGTGCGGGAGCCTCGGGC
*
20884759 ACAATCG
1 ACCATCG
20884766 GCAAACTAAA
Statistics
Matches: 132, Mismatches: 36, Indels: 14
0.73 0.20 0.08
Matches are distributed among these distances:
40 1 0.01
41 23 0.17
42 84 0.64
43 24 0.18
ACGTcount: A:0.18, C:0.30, G:0.32, T:0.19
Consensus pattern (41 bp):
ACCATCGACACCTAGGTGTTGGATGTGCGGGAGCCTCGGGC
Found at i:20884787 original size:85 final size:84
Alignment explanation
Indices: 20884616--20884808 Score: 226
Period size: 85 Copynumber: 2.3 Consensus size: 84
20884606 GTGCTATGAT
* * * * *
20884616 GTGCGGGAGCCTTGAGCACCACCGACACCTTGGTGTTGGATGTGCGGGAACCTCTGACAGCATAG
1 GTGCGGGAGCCTCGGGCACCACCGACACCTAGGTGTTGGATGTACGGGAACCTCGGACAGCATAG
* **
20884681 GCAACCTAGGCCCTTGGTC
66 GCAAACTAAACCCTTGGTC
* * * *
20884700 GTGCGAGAGCCTCGGGCACCATCGCCACCTAGGTGTTCGGATGTACGGGAGCCTCGGACA-CAAT
1 GTGCGGGAGCCTCGGGCACCACCGACACCTAGGTGTT-GGATGTACGGGAACCTCGGACAGC-AT
*
20884764 CGGCAAACTAAACCCTTGGTC
64 AGGCAAACTAAACCCTTGGTC
* *
20884785 GTGCGGGATCCTCAGGCACCACCG
1 GTGCGGGAGCCTCGGGCACCACCG
20884809 GTAAAACCGT
Statistics
Matches: 90, Mismatches: 17, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
84 32 0.36
85 58 0.64
ACGTcount: A:0.20, C:0.31, G:0.31, T:0.18
Consensus pattern (84 bp):
GTGCGGGAGCCTCGGGCACCACCGACACCTAGGTGTTGGATGTACGGGAACCTCGGACAGCATAG
GCAAACTAAACCCTTGGTC
Found at i:20890022 original size:43 final size:43
Alignment explanation
Indices: 20889913--20890335 Score: 326
Period size: 43 Copynumber: 9.9 Consensus size: 43
20889903 TCCGGTAGCA
* * * *
20889913 TAGGCCCTTGGTCGTACGAGAGGCTCGGGCACCATCGGC-ACG
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* ** * * **
20889955 TGGGTGCTAGAAT-GTGCGGGAGCCTCGAACACCATCGGCAACC
1 TAGGCCCTTG-GTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* * *
20889998 TAGGCCCTTGGTCGTGCGAGAGCCTTGGGCACCATCAGC-ACC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* ** * * * *
20890040 TAAGTGCTTGGTTGTGTGGGAGCCTCGGACACCATCGGCAAAC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
*
20890083 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACTATCGGCAACC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* ** *
20890126 TAGGCCCTTGGTCATGCAAGAGCCTCGGGCACCATCGTG--ACT
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCG-GCAACC
* * * * * *
20890168 TGGGCACTCGGAT-GTGCGGGAGCATCAGACACCATCGGCAACC
1 TAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* * *
20890211 TAGGCCCTTGGTCTTGCGAGAGCCTTGGGCACCATCGGC-ACC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* * * * *
20890253 TAGGCGCTCGAAT-GTTG-GGGAGCCTCGGAG-ACTATCGGCAAAC
1 TAGGCCCTTG-GTCG-TGCGGGAGCCTCGG-GCACCATCGGCAACC
* * * *
20890296 TAAGCCCTTGGTCATGCGGGAGCTTCGGGTACCATCGGCA
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCA
20890336 CATCGGTGGT
Statistics
Matches: 287, Mismatches: 78, Indels: 31
0.72 0.20 0.08
Matches are distributed among these distances:
41 1 0.00
42 122 0.43
43 163 0.57
44 1 0.00
ACGTcount: A:0.19, C:0.29, G:0.33, T:0.19
Consensus pattern (43 bp):
TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
Found at i:20890061 original size:85 final size:85
Alignment explanation
Indices: 20889913--20890114 Score: 278
Period size: 85 Copynumber: 2.4 Consensus size: 85
20889903 TCCGGTAGCA
* * * * **
20889913 TAGGCCCTTGGTCGTACGAGAGGCTCGGGCACCATCGGCACGTGGGTGCTAGAATGTGCGGGAGC
1 TAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCAGCACCTAAGTGCTAGAATGTGCGGGAGC
*
20889978 CTCGAACACCATCGGCAACC
66 CTCGAACACCATCGGCAAAC
* * ** *
20889998 TAGGCCCTTGGTCGTGCGAGAGCCTTGGGCACCATCAGCACCTAAGTGCTTGGTTGTGTGGGAGC
1 TAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCAGCACCTAAGTGCTAGAATGTGCGGGAGC
*
20890063 CTCGGACACCATCGGCAAAC
66 CTCGAACACCATCGGCAAAC
*
20890083 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCAC
1 TAGGCCCTTGGTCGTGCGAGAGCCTCGGGCAC
20890115 TATCGGCAAC
Statistics
Matches: 102, Mismatches: 15, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
85 102 1.00
ACGTcount: A:0.18, C:0.29, G:0.34, T:0.19
Consensus pattern (85 bp):
TAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCAGCACCTAAGTGCTAGAATGTGCGGGAGC
CTCGAACACCATCGGCAAAC
Found at i:20890148 original size:128 final size:128
Alignment explanation
Indices: 20889968--20890257 Score: 368
Period size: 128 Copynumber: 2.3 Consensus size: 128
20889958 GTGCTAGAAT
** * * *
20889968 GTGCGGGAGCCTCGAACACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTTGGGCACCAT
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCATGCAAGAGCCTCGGGCACCAT
** * * * * *
20890033 CAG-CACCTAAGTGCTTGGTTGTGTGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTC
66 C-GTCACCTAAGCACTCGGATGTGCGGGAGCATCAGACACCATCGGCAAACTAGGCCCTTGGTC
*
20890096 GTGCGGGAGCCTCGGGCACTATCGGCAACCTAGGCCCTTGGTCATGCAAGAGCCTCGGGCACCAT
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCATGCAAGAGCCTCGGGCACCAT
* * ** *
20890161 CGTGACTTGGGCACTCGGATGTGCGGGAGCATCAGACACCATCGGCAACCTAGGCCCTTGGTC
66 CGTCACCTAAGCACTCGGATGTGCGGGAGCATCAGACACCATCGGCAAACTAGGCCCTTGGTC
* * *
20890224 TTGCGAGAGCCTTGGGCACCATCGGC-ACCTAGGC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGC
20890258 GCTCGAATGT
Statistics
Matches: 139, Mismatches: 22, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
127 9 0.06
128 130 0.94
ACGTcount: A:0.19, C:0.31, G:0.32, T:0.19
Consensus pattern (128 bp):
GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCATGCAAGAGCCTCGGGCACCAT
CGTCACCTAAGCACTCGGATGTGCGGGAGCATCAGACACCATCGGCAAACTAGGCCCTTGGTC
Found at i:20890213 original size:85 final size:85
Alignment explanation
Indices: 20890059--20890336 Score: 301
Period size: 85 Copynumber: 3.3 Consensus size: 85
20890049 GGTTGTGTGG
* * * * * *
20890059 GAGCCTCGGACACCATCGGCAAACTAGGCCCTTG-GTCGTGCGGGAGCCTCGGGCACTATCGGCA
1 GAGCCTCGGGCACCATCGGC-ACCTAGGCACTCGAAT-GTGCGGGAGCCTCGGACACTATCGGCA
*
20890123 ACCTAGGCCCTTGGTCATGCAA
64 ACCTAGGCCCTTGGTCATGCGA
* * * * * *
20890145 GAGCCTCGGGCACCATCGTG-ACTTGGGCACTCGGATGTGCGGGAGCATCAGACACCATCGGCAA
1 GAGCCTCGGGCACCATCG-GCACCTAGGCACTCGAATGTGCGGGAGCCTCGGACACTATCGGCAA
*
20890209 CCTAGGCCCTTGGTCTTGCGA
65 CCTAGGCCCTTGGTCATGCGA
* * *
20890230 GAGCCTTGGGCACCATCGGCACCTAGGCGCTCGAATGTTG-GGGAGCCTCGGAGACTATCGGCAA
1 GAGCCTCGGGCACCATCGGCACCTAGGCACTCGAATG-TGCGGGAGCCTCGGACACTATCGGCAA
* * *
20890294 ACTAAGCCCTTGGTCATGCGG
65 CCTAGGCCCTTGGTCATGCGA
* *
20890315 GAGCTTCGGGTACCATCGGCAC
1 GAGCCTCGGGCACCATCGGCAC
20890337 ATCGGTGGTC
Statistics
Matches: 159, Mismatches: 29, Indels: 9
0.81 0.15 0.05
Matches are distributed among these distances:
84 1 0.01
85 137 0.86
86 20 0.13
87 1 0.01
ACGTcount: A:0.19, C:0.31, G:0.32, T:0.18
Consensus pattern (85 bp):
GAGCCTCGGGCACCATCGGCACCTAGGCACTCGAATGTGCGGGAGCCTCGGACACTATCGGCAAC
CTAGGCCCTTGGTCATGCGA
Found at i:20890280 original size:213 final size:213
Alignment explanation
Indices: 20889913--20890335 Score: 582
Period size: 213 Copynumber: 2.0 Consensus size: 213
20889903 TCCGGTAGCA
* * * **
20889913 TAGGCCCTTGGTCGTACGAGAGGCTCGGGCACCATCGGCACGTGGGTGCTAGAATGTGCGGGAGC
1 TAGGCCCTTGGTCATACAAGAGCCTCGGGCACCATCGGCACGTGGGCACTAGAATGTGCGGGAGC
*
20889978 CTCGAACACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTTGGGCACCATCAGCACCTAA
66 ATCGAACACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTTGGGCACCATCAGCACCTAA
* * ** * *
20890043 GTGCTTGGTTGTGTGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGAGCCT
131 GCGCTCGAATGTGTGGGAGCCTCGGACACCATCGGCAAACTAAGCCCTTGGTCATGCGGGAGCCT
*
20890108 CGGGCACTATCGGCAACC
196 CGGGCACCATCGGCAACC
* * * *
20890126 TAGGCCCTTGGTCATGCAAGAGCCTCGGGCACCATCGTG-ACTTGGGCACTCGGATGTGCGGGAG
1 TAGGCCCTTGGTCATACAAGAGCCTCGGGCACCATCG-GCACGTGGGCACTAGAATGTGCGGGAG
* *
20890190 CATC-AGACACCATCGGCAACCTAGGCCCTTGGTCTTGCGAGAGCCTTGGGCACCATCGGCACCT
65 CATCGA-ACACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTTGGGCACCATCAGCACCT
* * *
20890254 AGGCGCTCGAATGT-TGGGGAGCCTCGGAGACTATCGGCAAACTAAGCCCTTGGTCATGCGGGAG
129 AAGCGCTCGAATGTGT-GGGAGCCTCGGACACCATCGGCAAACTAAGCCCTTGGTCATGCGGGAG
* *
20890318 CTTCGGGTACCATCGGCA
193 CCTCGGGCACCATCGGCA
20890336 CATCGGTGGT
Statistics
Matches: 183, Mismatches: 24, Indels: 6
0.86 0.11 0.03
Matches are distributed among these distances:
212 2 0.01
213 180 0.98
214 1 0.01
ACGTcount: A:0.19, C:0.29, G:0.33, T:0.19
Consensus pattern (213 bp):
TAGGCCCTTGGTCATACAAGAGCCTCGGGCACCATCGGCACGTGGGCACTAGAATGTGCGGGAGC
ATCGAACACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTTGGGCACCATCAGCACCTAA
GCGCTCGAATGTGTGGGAGCCTCGGACACCATCGGCAAACTAAGCCCTTGGTCATGCGGGAGCCT
CGGGCACCATCGGCAACC
Found at i:20898854 original size:43 final size:43
Alignment explanation
Indices: 20898806--20899624 Score: 391
Period size: 43 Copynumber: 19.3 Consensus size: 43
20898796 GAAGCCTCAA
* * * *
20898806 ACACCATCGGTAACCTAGGTCCTTGGTCGTGTGAGAGCCTTGG
1 ACACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGG
* ** *
20898849 GCACCATCGGC-ACCTAGGTGCTTGGAT-GTGCG-GAAGCCTCAG
1 ACACCATCGGCAACCTAGGCCCTTGG-TCGTGCGAG-AGCCTCGG
* *
20898891 ACACCATCGGCAA-CGAGGCCCTTGGTCGTGCG-GTAGCCTTGG
1 ACACCATCGGCAACCTAGGCCCTTGGTCGTGCGAG-AGCCTCGG
* *
20898933 GCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGG
1 ACACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGG
* * * ** * * *
20898976 GCACCATC--AAGACCTGGGAGCTCTGAT-GTGCGGGAGCATCGG
1 ACACCATCGGCA-ACCTAGGCCCT-TGGTCGTGCGAGAGCCTCGG
* *
20899018 ACACCATCGGCAACCTAAGCCCTTGGTCGTGCAAGAGCCTCGG
1 ACACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGG
* *
20899061 ACACCATCGGCAACCTAAGCCCTTGGTCGTGCAAGAGCCTCGG
1 ACACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGG
* * *
20899104 ACACCATCGGC-ACCTAGGCGCTCGGAT-GTGCGGGAGCCTCGG
1 ACACCATCGGCAACCTAGGCCCTTGG-TCGTGCGAGAGCCTCGG
* * * * ** ** *
20899146 AGACCATCGGTAAACTAAGCCCTTGGTTATATGGGAGCCTCGG
1 ACACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGG
* * ** * *
20899189 CCACCATCGGC-ACCTCGGTGCATGGAT-GTATG-GA-AGCCTTGG
1 ACACCATCGGCAACCTAGGCCCTTGG-TCG--TGCGAGAGCCTCGG
* ** * * * *
20899231 GCACCATCAACAACTTAGGACCTTGTTCGTGCGGGAGCCTC-G
1 ACACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGG
* * ** * *
20899273 AGCACCATCGAC-ACCTCGGTGCTTGGAT-GTGC-AGTAACCTCAG
1 A-CACCATCGGCAACCTAGGCCCTTGG-TCGTGCGAG-AGCCTCGG
* * *
20899316 ACACCATCAGCAACCTAGGCCTTTGGTCGTACGAGAGCCTC-G
1 ACACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGG
* * * * * *
20899358 AGCACCATCGAC-ACCTAGGCGCTCGGAT-GTGTGGGAGCCTCAG
1 A-CACCATCGGCAACCTAGGCCCTTGG-TCGTGCGAGAGCCTCGG
* * ** ** *
20899401 ACACCATCGACAA-CTTGGTGCTT-GTATATGCGGGAGCCTC-G
1 ACACCATCGGCAACCTAGGCCCTTGGT-CGTGCGAGAGCCTCGG
* * ** * * * *
20899442 AGCACCACCGGC-ACCTTGGTGGCTCGGAT-GTCCGGGAGCCTCAG
1 A-CACCATCGGCAACCTAGG-CCCTTGG-TCGTGCGAGAGCCTCGG
* * ** * *
20899486 ACACCATCAGCAACCTTGGTGCTT-AT-GTGC-AGAAGCCTCAG
1 ACACCATCGGCAACCTAGGCCCTTGGTCGTGCGAG-AGCCTCGG
* * * * * * *
20899527 ACACCATCAGCAAACTAGGCCCTTGGTTGTACGGGGGTCTCGG
1 ACACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGG
* * * *
20899570 GCACCATCGGTATCCTAGGCCCTTGGTTGTGCGAGAGCCTCGG
1 ACACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGG
*
20899613 GCACCATCGGCA
1 ACACCATCGGCA
20899625 CCTGGGTGCT
Statistics
Matches: 598, Mismatches: 133, Indels: 90
0.73 0.16 0.11
Matches are distributed among these distances:
40 2 0.00
41 42 0.07
42 250 0.42
43 287 0.48
44 16 0.03
45 1 0.00
ACGTcount: A:0.20, C:0.30, G:0.30, T:0.19
Consensus pattern (43 bp):
ACACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGG
Found at i:20898949 original size:85 final size:84
Alignment explanation
Indices: 20898787--20899664 Score: 536
Period size: 85 Copynumber: 10.3 Consensus size: 84
20898777 CTTGACACTA
* * * * * * *
20898787 GGATGTGTGGAAGCCTCAAACACCATCGGTAACCTAGGTCCTTGGTCGTGTGAGAGCCTTGGGCA
1 GGATGTGCGGAAGCCTCAGACACCATCGGCAA-CTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
*
20898852 CCATCGGCACCTAGGTGCTT
65 CCATCGGCACCTAGGCGCTT
* * *
20898872 GGATGTGCGGAAGCCTCAGACACCATCGGCAACGAGGCCCTTGGTCGTGCGGTAGCCTTGGGCAC
1 GGATGTGCGGAAGCCTCAGACACCATCGGCAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCAC
*
20898937 CATCGGCAACCTAGGCCCTT
66 CATCGGC-ACCTAGGCGCTT
* * * * * * ** * * *
20898957 GG-TCGTGCGGGAGCCTCGGGCACCATCAAG-ACCTGGGAGCTCTGAT-GTGCGGGAGCATCGGA
1 GGAT-GTGCGGAAGCCTCAGACACCATC-GGCAACTAGGCCCT-TGGTCGTGCGGGAGCCTCGGG
* *
20899019 CACCATCGGCAACCTAAGCCCTT
63 CACCATCGGC-ACCTAGGCGCTT
* * * ** *
20899042 GG-TCGTGC-AAGAGCCTCGGACACCATCGGCAACCTAAGCCCTTGGTCGTGCAAGAGCCTCGGA
1 GGAT-GTGCGGA-AGCCTCAGACACCATCGGCAA-CTAGGCCCTTGGTCGTGCGGGAGCCTCGGG
*
20899105 CACCATCGGCACCTAGGCGCTC
63 CACCATCGGCACCTAGGCGCTT
* * * * * ** ** *
20899127 GGATGTGCGGGAGCCTCGGAGACCATCGGTAAACTAAGCCCTTGGTTATATGGGAGCCTCGGCCA
1 GGATGTGCGGAAGCCTCAGACACCATCGG-CAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* * *
20899192 CCATCGGCACCTCGGTGCAT
65 CCATCGGCACCTAGGCGCTT
** ** * ** * * *
20899212 GGATGTATGGAAGCCTTGGGCACCATCAACAACTTAGGACCTTGTTCGTGCGGGAGCCTCGAGCA
1 GGATGTGCGGAAGCCTCAGACACCATCGGCAAC-TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* * *
20899277 CCATCGACACCTCGGTGCTT
65 CCATCGGCACCTAGGCGCTT
* * * * * *
20899297 GGATGTGCAGTAA-CCTCAGACACCATCAGCAACCTAGGCCTTTGGTCGTACGAGAGCCTCGAGC
1 GGATGTGC-GGAAGCCTCAGACACCATCGGCAA-CTAGGCCCTTGGTCGTGCGGGAGCCTCGGGC
* *
20899361 ACCATCGACACCTAGGCGCTC
64 ACCATCGGCACCTAGGCGCTT
* * * * ** ** *
20899382 GGATGTGTGGGAGCCTCAGACACCATCGACAACTTGGTGCTT-GTATATGCGGGAGCCTCGAGCA
1 GGATGTGCGGAAGCCTCAGACACCATCGGCAACTAGGCCCTTGGT-CGTGCGGGAGCCTCGGGCA
* * * *
20899446 CCACCGGCACCTTGGTGGCTC
65 CCATCGGCACCTAGG-CGCTT
* * * * ** * * * * *
20899467 GGATGTCCGGGAGCCTCAGACACCATCAGCAACCTTGGTGCTT-AT-GTGCAGAAGCCTCAGACA
1 GGATGTGCGGAAGCCTCAGACACCATCGGCAA-CTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* * *
20899530 CCATCAGCAAACTAGGCCCTT
65 CCATCGGC-ACCTAGGCGCTT
* * ** * * * * * * *
20899551 GGTTGTACGGGGGTCTCGGGCACCATCGGTATCCTAGGCCCTTGGTTGTGCGAGAGCCTCGGGCA
1 GGATGTGCGGAAGCCTCAGACACCATCGGCA-ACTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* * *
20899616 CCATCGGCACCTGGGTGCTC
65 CCATCGGCACCTAGGCGCTT
20899636 GGATGTGCGGGAA-CCTC-GAACACCATCGG
1 GGATGTGC-GGAAGCCTCAG-ACACCATCGG
20899665 GACCTTGGTG
Statistics
Matches: 613, Mismatches: 156, Indels: 48
0.75 0.19 0.06
Matches are distributed among these distances:
83 2 0.00
84 126 0.21
85 413 0.67
86 72 0.12
ACGTcount: A:0.20, C:0.30, G:0.30, T:0.19
Consensus pattern (84 bp):
GGATGTGCGGAAGCCTCAGACACCATCGGCAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCAC
CATCGGCACCTAGGCGCTT
Found at i:20899090 original size:128 final size:127
Alignment explanation
Indices: 20898806--20899664 Score: 562
Period size: 127 Copynumber: 6.7 Consensus size: 127
20898796 GAAGCCTCAA
* * * * *
20898806 ACACCATCGGTAACCTAGGTCCTTGGTCGTGTGAGAGCCTTGGGCACCATCGGCACCTAGGTGCT
1 ACACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCACCTAGGAGCT
* * * * * *
20898871 -TGGATGTGCGGAAGCCTCAGACACCATCGGCAACGAGGCCCTTGGTCGTGCGGTAGCCTTGG
66 CT-GATGTGCGGGAGCCTCGGACACCATCGGCAACTAAGCCCTTGGTCGTGCAGTAGCCTCGG
* * * *
20898933 GCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCAAG-ACCTGGGAGC
1 ACACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATC-GGCACCTAGGAGC
*
20898997 TCTGATGTGCGGGAGCATCGGACACCATCGGCAACCTAAGCCCTTGGTCGTGCAAG-AGCCTCGG
65 TCTGATGTGCGGGAGCCTCGGACACCATCGGCAA-CTAAGCCCTTGGTCGTGC-AGTAGCCTCGG
* * * *
20899061 ACACCATCGGCAACCTAAGCCCTTGGTCGTGCAAGAGCCTCGGACACCATCGGCACCTAGGCGCT
1 ACACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCACCTAGGAGCT
* * * ** *** *
20899126 CGGATGTGCGGGAGCCTCGGAGACCATCGGTAAACTAAGCCCTTGGTTATATGGGAGCCTCGG
66 CTGATGTGCGGGAGCCTCGGACACCATCGG-CAACTAAGCCCTTGGTCGTGCAGTAGCCTCGG
* * ** * * ** *
20899189 CCACCATCGGC-ACCTCGGTGCATGGAT-GTATG-GA-AGCCTTGGGCACCATCAACAACTTAGG
1 ACACCATCGGCAACCTAGGCCCTTGG-TCG--TGCGAGAGCCTCGGGCACCATCGGC-ACCTAGG
* * * * ** ** *
20899250 ACCT-TGTTCGTGCGGGAGCCTC-GAGCACCATCGACACCTCGGTGCTTGGAT-GTGCAGTAACC
62 AGCTCTGAT-GTGCGGGAGCCTCGGA-CACCATCGGCAACTAAGCCCTTGG-TCGTGCAGTAGCC
*
20899312 TCAG
124 TCGG
* * * * * *
20899316 ACACCATCAGCAACCTAGGCCTTTGGTCGTACGAGAGCCTCGAGCACCATCGACACCTAGGCGCT
1 ACACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCACCTAGGAGCT
* * * * ** ** ** * *
20899381 CGGATGTGTGGGAGCCTCAGACACCATCGACAACTTGGTGCTT-GTATATGCGGGAGCCTC-G
66 CTGATGTGCGGGAGCCTCGGACACCATCGGCAACTAAGCCCTTGGT-CGTGCAGTAGCCTCGG
* * ** * * * * * * *
20899442 AGCACCACCGGC-ACCTTGGTGGCTCGGAT-GTCCGGGAGCCTCAGACACCATCAGCAACCTTGG
1 A-CACCATCGGCAACCTAGG-CCCTTGG-TCGTGCGAGAGCCTCGGGCACCATCGGC-ACCTAGG
* * * * * * * * * ** *
20899505 TGCT-T-ATGTGCAGAAGCCTCAGACACCATCAGCAAACTAGGCCCTTGGTTGTACGGGGGTCTC
62 AGCTCTGATGTGCGGGAGCCTCGGACACCATCGGC-AACTAAGCCCTTGGTCGTGCAGTAGCCTC
20899568 GG
126 GG
* * * * * *
20899570 GCACCATCGGTATCCTAGGCCCTTGGTTGTGCGAGAGCCTCGGGCACCATCGGCACCTGGGTGCT
1 ACACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCACCTAGGAGCT
* * *
20899635 CGGATGTGCGGGAACCTCGAACACCATCGG
66 CTGATGTGCGGGAGCCTCGGACACCATCGG
20899665 GACCTTGGTG
Statistics
Matches: 562, Mismatches: 137, Indels: 65
0.74 0.18 0.09
Matches are distributed among these distances:
125 1 0.00
126 44 0.08
127 273 0.49
128 239 0.43
129 5 0.01
ACGTcount: A:0.20, C:0.30, G:0.30, T:0.19
Consensus pattern (127 bp):
ACACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCACCTAGGAGCT
CTGATGTGCGGGAGCCTCGGACACCATCGGCAACTAAGCCCTTGGTCGTGCAGTAGCCTCGG
Found at i:20899321 original size:255 final size:255
Alignment explanation
Indices: 20898800--20899409 Score: 651
Period size: 255 Copynumber: 2.4 Consensus size: 255
20898790 TGTGTGGAAG
* * * * * *
20898800 CCTCAAACACCATCGGTAACCTAGGTCCTTGGTCGTGTGAGAGCCTTGGGCACCATCGGCACCTA
1 CCTCAGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGACACCATCGGCACCTA
* * * * * * * *
20898865 GGTGCTTGGATGTGCGGAAGCCTCAGACACCATCGGCAACGAGGCCCTTGGTCGTGCGGTAGCCT
66 GGCGCTCGGATGTGCGGGAGCCTCAGACACCATCGGAAACGAAGCCCTTGGTCATACGGGAGCCT
* * * * * * *
20898930 TGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCAAGACCTGGGA
131 CGGCCACCATCGGCAACCTAGGCCCATGGTCGTACGGAAGCCTCGGGCACCATCAAAACCTAGGA
* * *
20898995 GCTCTGATGTGCGGGAGCATCGGACACCATCGGCAACCTAAGCCCTTGGTCGTGCAAGAG
196 CCTCTGATGTGCGGGAGCATCGGACACCATCGACAACCTAAGCCCTTGGTCGTGCAAGAA
* * *
20899055 CCTCGGACACCATCGGCAACCTAAGCCCTTGGTCGTGCAAGAGCCTCGGACACCATCGGCACCTA
1 CCTCAGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGACACCATCGGCACCTA
* * * * *
20899120 GGCGCTCGGATGTGCGGGAGCCTCGGAGACCATCGGTAAACTAAGCCCTTGGTTATATGGGAGCC
66 GGCGCTCGGATGTGCGGGAGCCTCAGACACCATCGG-AAACGAAGCCCTTGGTCATACGGGAGCC
* ** * * *
20899185 TCGGCCACCATCGGC-ACCTCGGTGCATGGAT-GTATGGAAGCCTTGGGCACCATCAACAACTTA
130 TCGGCCACCATCGGCAACCTAGGCCCATGG-TCGTACGGAAGCCTCGGGCACCATCAA-AACCTA
* * ** **
20899248 GGACCT-TGTTCGTGCGGGAGCCTC-GAGCACCATCGAC-ACCTCGGTGCTTGGAT-GTGC-AGT
193 GGACCTCTGAT-GTGCGGGAGCATCGGA-CACCATCGACAACCTAAGCCCTTGG-TCGTGCAAG-
20899308 AA
254 AA
* * * *
20899310 CCTCAGACACCATCAGCAACCTAGGCCTTTGGTCGTACGAGAGCCTC-GAGCACCATCGACACCT
1 CCTCAGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGA-CACCATCGGCACCT
*
20899374 AGGCGCTCGGATGTGTGGGAGCCTCAGACACCATCG
65 AGGCGCTCGGATGTGCGGGAGCCTCAGACACCATCG
20899410 ACAACTTGGT
Statistics
Matches: 293, Mismatches: 54, Indels: 16
0.81 0.15 0.04
Matches are distributed among these distances:
254 4 0.01
255 225 0.77
256 64 0.22
ACGTcount: A:0.21, C:0.31, G:0.30, T:0.19
Consensus pattern (255 bp):
CCTCAGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGACACCATCGGCACCTA
GGCGCTCGGATGTGCGGGAGCCTCAGACACCATCGGAAACGAAGCCCTTGGTCATACGGGAGCCT
CGGCCACCATCGGCAACCTAGGCCCATGGTCGTACGGAAGCCTCGGGCACCATCAAAACCTAGGA
CCTCTGATGTGCGGGAGCATCGGACACCATCGACAACCTAAGCCCTTGGTCGTGCAAGAA
Found at i:20911339 original size:43 final size:43
Alignment explanation
Indices: 20911242--20911414 Score: 208
Period size: 42 Copynumber: 4.1 Consensus size: 43
20911232 CTCCCCACTG
*
20911242 TCGGTACCTTGGTGGCTCGGATGTGCGGGAG-CTCGAGCAGCA
1 TCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCAGCA
* * *
20911284 TCGGCACCTTGGTGGCTCAGATGTGCAGGAGCCTCGAGCAGTA
1 TCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCAGCA
* * * * * *
20911327 TTGGCACTTTGGT-GCTTGGATGTGCGGCAGCCTCAAGCACCA
1 TCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCAGCA
* * *
20911369 TCGGCACCTTGGTGCCTCGGATGTGCGGGAGCCCCGAG-ACCA
1 TCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCAGCA
20911411 TCGG
1 TCGG
20911415 TAACTTTAGC
Statistics
Matches: 109, Mismatches: 20, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
42 69 0.63
43 40 0.37
ACGTcount: A:0.16, C:0.27, G:0.36, T:0.21
Consensus pattern (43 bp):
TCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCAGCA
Found at i:20911376 original size:85 final size:85
Alignment explanation
Indices: 20911250--20911406 Score: 226
Period size: 85 Copynumber: 1.8 Consensus size: 85
20911240 TGTCGGTACC
* * * *
20911250 TTGGTGGCTCGGATGTGCGGGAGCTCGAGCAGCATCGGCACCTTGGTGGCTCAGATGTGCAGGAG
1 TTGGTGGCTCGGATGTGCGGCAGCTCAAGCACCATCGGCACCTTGGTGCCTCAGATGTGCAGGAG
*
20911315 CCTCGAGCAGTATTGGCACT
66 CCCCGAGCAGTATTGGCACT
* * *
20911335 TTGGT-GCTTGGATGTGCGGCAGCCTCAAGCACCATCGGCACCTTGGTGCCTCGGATGTGCGGGA
1 TTGGTGGCTCGGATGTGCGGCAG-CTCAAGCACCATCGGCACCTTGGTGCCTCAGATGTGCAGGA
20911399 GCCCCGAG
65 GCCCCGAG
20911407 ACCATCGGTA
Statistics
Matches: 63, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
84 15 0.24
85 48 0.76
ACGTcount: A:0.15, C:0.26, G:0.37, T:0.22
Consensus pattern (85 bp):
TTGGTGGCTCGGATGTGCGGCAGCTCAAGCACCATCGGCACCTTGGTGCCTCAGATGTGCAGGAG
CCCCGAGCAGTATTGGCACT
Found at i:20911421 original size:85 final size:85
Alignment explanation
Indices: 20911242--20911421 Score: 211
Period size: 85 Copynumber: 2.1 Consensus size: 85
20911232 CTCCCCACTG
* * * * *
20911242 TCGGTACCTTGGTGGCTCGGATGTGCGGGAGCTCGAGCAGCATCGGCACCTTGGTGGCTCAGATG
1 TCGGTACTTTGGTGGCTCGGATGTGCGGCAGCTCAAGCACCATCGGCACCTTGGTGCCTCAGATG
* **
20911307 TGCAGGAGCCTCGAGCAGTA
66 TGCAGGAGCCCCGAGCACCA
* * * *
20911327 TTGGCACTTTGGT-GCTTGGATGTGCGGCAGCCTCAAGCACCATCGGCACCTTGGTGCCTCGGAT
1 TCGGTACTTTGGTGGCTCGGATGTGCGGCAG-CTCAAGCACCATCGGCACCTTGGTGCCTCAGAT
*
20911391 GTGCGGGAGCCCCGAG-ACCA
65 GTGCAGGAGCCCCGAGCACCA
20911411 TCGGTAACTTT
1 TCGGT-ACTTT
20911422 AGCCCTTGTT
Statistics
Matches: 78, Mismatches: 15, Indels: 4
0.80 0.15 0.04
Matches are distributed among these distances:
84 20 0.26
85 58 0.74
ACGTcount: A:0.16, C:0.27, G:0.34, T:0.23
Consensus pattern (85 bp):
TCGGTACTTTGGTGGCTCGGATGTGCGGCAGCTCAAGCACCATCGGCACCTTGGTGCCTCAGATG
TGCAGGAGCCCCGAGCACCA
Found at i:20911846 original size:57 final size:58
Alignment explanation
Indices: 20911721--20911833 Score: 176
Period size: 57 Copynumber: 2.0 Consensus size: 58
20911711 CGATGAACCG
*
20911721 AGTCCCTCCCCAATGCCAAAGGTACATGTTCGGTACCCAACAATGAATGAATCGTCCC
1 AGTCCCTCCCCAATGCCAAAGGTACATATTCGGTACCCAACAATGAATGAATCGTCCC
* *
20911779 AGTCCCTCCCCAAT-CCAAGGGTAGA-ATTCGGATACCCAACAATGAATGAATCGTC
1 AGTCCCTCCCCAATGCCAAAGGTACATATTCGG-TACCCAACAATGAATGAATCGTC
20911834 TTGGTCCCTC
Statistics
Matches: 51, Mismatches: 3, Indels: 3
0.89 0.05 0.05
Matches are distributed among these distances:
56 5 0.10
57 32 0.63
58 14 0.27
ACGTcount: A:0.31, C:0.31, G:0.18, T:0.20
Consensus pattern (58 bp):
AGTCCCTCCCCAATGCCAAAGGTACATATTCGGTACCCAACAATGAATGAATCGTCCC
Found at i:20911930 original size:43 final size:42
Alignment explanation
Indices: 20911883--20912408 Score: 495
Period size: 43 Copynumber: 12.6 Consensus size: 42
20911873 TGGTGGATCA
* * *
20911883 GATGTGCAGGAGCCTCGAACCCCATCGGAACCTTGGTGGCTCG
1 GATGTGCGGGAGCCTCGAACACCATCGGAACCTTGGT-GCTTG
* * * *
20911926 GATGTGTGGGAGCCTCGAGCACCATCGGCACCTCGGTGCTTG
1 GATGTGCGGGAGCCTCGAACACCATCGGAACCTTGGTGCTTG
* * *
20911968 GATGTACGAGAGCCTCGACCACCATCGGTAACCTTGGTGCTTG
1 GATGTGCGGGAGCCTCGAACACCATCGG-AACCTTGGTGCTTG
* * * *
20912011 GATGTGCGAGAGCCTCGAGCACCATC-GATATCATGGTGCTTG
1 GATGTGCGGGAGCCTCGAACACCATCGGA-ACCTTGGTGCTTG
* * * * *
20912053 TATGTACGGGAGCCTCGAGCACCATCGGGACCTTGGTGGCTCG
1 GATGTGCGGGAGCCTCGAACACCATCGGAACCTTGGT-GCTTG
*
20912096 GATGTGCGGGAGCCTC-AGACACTATCGGCAACCTTGGTGC---
1 GATGTGCGGGAGCCTCGA-ACACCATCGG-AACCTTGGTGCTTG
* * *
20912136 --T-T---GGAGCCTCGAGCACCATCGGCACCTTGGTGCTTT
1 GATGTGCGGGAGCCTCGAACACCATCGGAACCTTGGTGCTTG
**
20912172 GATGTGCGGGAGCCTCGGCCACCATCGGCAACCTTGGTGCTTG
1 GATGTGCGGGAGCCTCGAACACCATCGG-AACCTTGGTGCTTG
* * * *
20912215 GATGTACGAGAGCCTAGAGCACCATCGGTAA-CTTGGTGCTTG
1 GATGTGCGGGAGCCTCGAACACCATCGG-AACCTTGGTGCTTG
* * * * *
20912257 TATGTGCGGGAGCCTTGAACACCATCAGCACCTTGGTGGCTCG
1 GATGTGCGGGAGCCTCGAACACCATCGGAACCTTGGT-GCTTG
*
20912300 AATGTGCGGGAGCCTC-AGACACCATCGGCAACCTTGGTGCTTG
1 GATGTGCGGGAGCCTCGA-ACACCATCGG-AACCTTGGTGCTTG
* * *
20912343 GATGTGTGGGAGCCTC-AAGCACCATCGGCACCTTAGTGCTTG
1 GATGTGCGGGAGCCTCGAA-CACCATCGGAACCTTGGTGCTTG
*
20912385 GATGTGCGGGAGCCTCGAGCACCA
1 GATGTGCGGGAGCCTCGAACACCA
20912409 AAGCTAAAGC
Statistics
Matches: 399, Mismatches: 61, Indels: 47
0.79 0.12 0.09
Matches are distributed among these distances:
33 10 0.03
34 16 0.04
35 1 0.00
37 1 0.00
38 2 0.01
39 1 0.00
41 2 0.01
42 161 0.40
43 189 0.47
44 16 0.04
ACGTcount: A:0.19, C:0.28, G:0.32, T:0.22
Consensus pattern (42 bp):
GATGTGCGGGAGCCTCGAACACCATCGGAACCTTGGTGCTTG
Found at i:20911993 original size:85 final size:85
Alignment explanation
Indices: 20911891--20912408 Score: 564
Period size: 85 Copynumber: 6.2 Consensus size: 85
20911881 CAGATGTGCA
* * * *
20911891 GGAGCCTCGAACCCCATCGG-AACCTTGGTGGCTCGGATGTGTGGGAGCCTCGAGCACCATCGGC
1 GGAGCCTCGAGCACCATCGGTAACCTTGGT-GCTTGGATGTGCGGGAGCCTCGAGCACCATCGGC
*
20911955 ACCTCGGTGCTTGGATGTACG
65 ACCTTGGTGCTTGGATGTACG
* * * **
20911976 AGAGCCTCGACCACCATCGGTAACCTTGGTGCTTGGATGTGCGAGAGCCTCGAGCACCATCGATA
1 GGAGCCTCGAGCACCATCGGTAACCTTGGTGCTTGGATGTGCGGGAGCCTCGAGCACCATCGGCA
* * *
20912041 TCATGGTGCTTGTATGTACG
66 CCTTGGTGCTTGGATGTACG
* * *
20912061 GGAGCCTCGAGCACCATCGG-GACCTTGGTGGCTCGGATGTGCGGGAGCCTC-AGACACTATCGG
1 GGAGCCTCGAGCACCATCGGTAACCTTGGT-GCTTGGATGTGCGGGAGCCTCGAG-CACCATCGG
20912124 CAACCTTGGTGC-----T-T---
64 C-ACCTTGGTGCTTGGATGTACG
* *
20912138 GGAGCCTCGAGCACCATCGG-CACCTTGGTGCTTTGATGTGCGGGAGCCTCG-GCCACCATCGGC
1 GGAGCCTCGAGCACCATCGGTAACCTTGGTGCTTGGATGTGCGGGAGCCTCGAG-CACCATCGGC
20912201 AACCTTGGTGCTTGGATGTACG
65 -ACCTTGGTGCTTGGATGTACG
* * * * * *
20912223 AGAGCCTAGAGCACCATCGGTAA-CTTGGTGCTTGTATGTGCGGGAGCCTTGAACACCATCAGCA
1 GGAGCCTCGAGCACCATCGGTAACCTTGGTGCTTGGATGTGCGGGAGCCTCGAGCACCATCGGCA
* * *
20912287 CCTTGGTGGCTCGAATGTGCG
66 CCTTGGT-GCTTGGATGTACG
* * *
20912308 GGAGCCTC-AGACACCATCGGCAACCTTGGTGCTTGGATGTGTGGGAGCCTCAAGCACCATCGGC
1 GGAGCCTCGAG-CACCATCGGTAACCTTGGTGCTTGGATGTGCGGGAGCCTCGAGCACCATCGGC
* *
20912372 ACCTTAGTGCTTGGATGTGCG
65 ACCTTGGTGCTTGGATGTACG
20912393 GGAGCCTCGAGCACCA
1 GGAGCCTCGAGCACCA
20912409 AAGCTAAAGC
Statistics
Matches: 363, Mismatches: 50, Indels: 40
0.80 0.11 0.09
Matches are distributed among these distances:
76 40 0.11
77 28 0.08
80 1 0.00
81 2 0.01
82 1 0.00
84 20 0.06
85 210 0.58
86 61 0.17
ACGTcount: A:0.19, C:0.28, G:0.32, T:0.22
Consensus pattern (85 bp):
GGAGCCTCGAGCACCATCGGTAACCTTGGTGCTTGGATGTGCGGGAGCCTCGAGCACCATCGGCA
CCTTGGTGCTTGGATGTACG
Found at i:20912111 original size:128 final size:129
Alignment explanation
Indices: 20911883--20912408 Score: 545
Period size: 128 Copynumber: 4.2 Consensus size: 129
20911873 TGGTGGATCA
* * * * * *
20911883 GATGTGCAGGAGCCTCGAACCCCATCGGA-ACCTTGGTGGCTCGGATGTGTGGGAGCCTCGAG-C
1 GATGTGCGGGAGCCTCGAGCACCATC-GACACCTTGGT-GCTTGTATGTGCGGGAGCCTCGAGAC
* *
20911946 ACCATCGGC-ACCTCGGTGCTTGGATGTACGAGAGCCTCGACCACCATCGGTAACCTTGGTGCTT
64 ACCATCGGCAACCTTGGTGCTTGGATGTACGAGAGCCTCGAGCACCATCGGTAACCTTGGTGCTT
20912010 G
129 G
* * * * *
20912011 GATGTGCGAGAGCCTCGAGCACCATCGATATCATGGTGCTTGTATGTACGGGAGCCTCGAG-CAC
1 GATGTGCGGGAGCCTCGAGCACCATCGACACCTTGGTGCTTGTATGTGCGGGAGCCTCGAGACAC
* * * * * *
20912075 CATCGG-GACCTTGGTGGCTCGGATGTGCGGGAGCCTC-AGACACTATCGGCAACCTTGGTGC--
66 CATCGGCAACCTTGGT-GCTTGGATGTACGAGAGCCTCGAG-CACCATCGGTAACCTTGGTGCTT
20912136 -
129 G
* *
20912136 --T-T---GGAGCCTCGAGCACCATCGGCACCTTGGTGCTT-TGATGTGCGGGAGCCTCG-GCCA
1 GATGTGCGGGAGCCTCGAGCACCATCGACACCTTGGTGCTTGT-ATGTGCGGGAGCCTCGAGACA
*
20912193 CCATCGGCAACCTTGGTGCTTGGATGTACGAGAGCCTAGAGCACCATCGGTAA-CTTGGTGCTTG
65 CCATCGGCAACCTTGGTGCTTGGATGTACGAGAGCCTCGAGCACCATCGGTAACCTTGGTGCTTG
* * * * *
20912257 TATGTGCGGGAGCCTTGAACACCATC-AGCACCTTGGTGGCTCGAATGTGCGGGAGCCTC-AGAC
1 GATGTGCGGGAGCCTCGAGCACCATCGA-CACCTTGGT-GCTTGTATGTGCGGGAGCCTCGAGAC
** * * * *
20912320 ACCATCGGCAACCTTGGTGCTTGGATGTGTGGGAGCCTCAAGCACCATCGG-CACCTTAGTGCTT
64 ACCATCGGCAACCTTGGTGCTTGGATGTACGAGAGCCTCGAGCACCATCGGTAACCTTGGTGCTT
20912384 G
129 G
20912385 GATGTGCGGGAGCCTCGAGCACCA
1 GATGTGCGGGAGCCTCGAGCACCA
20912409 AAGCTAAAGC
Statistics
Matches: 330, Mismatches: 46, Indels: 44
0.79 0.11 0.10
Matches are distributed among these distances:
118 10 0.03
119 79 0.24
120 10 0.03
122 1 0.00
123 2 0.01
124 1 0.00
127 65 0.20
128 162 0.49
ACGTcount: A:0.19, C:0.28, G:0.32, T:0.22
Consensus pattern (129 bp):
GATGTGCGGGAGCCTCGAGCACCATCGACACCTTGGTGCTTGTATGTGCGGGAGCCTCGAGACAC
CATCGGCAACCTTGGTGCTTGGATGTACGAGAGCCTCGAGCACCATCGGTAACCTTGGTGCTTG
Found at i:20912168 original size:33 final size:34
Alignment explanation
Indices: 20912104--20912170 Score: 102
Period size: 34 Copynumber: 2.0 Consensus size: 34
20912094 CGGATGTGCG
*
20912104 GGAGCCTCAGACACTATCGGCAACCTTGGTGCTT
1 GGAGCCTCAGACACCATCGGCAACCTTGGTGCTT
20912138 GGAGCCTC-GAGCACCATCGGC-ACCTTGGTGCTT
1 GGAGCCTCAGA-CACCATCGGCAACCTTGGTGCTT
20912171 TGATGTGCGG
Statistics
Matches: 31, Mismatches: 1, Indels: 3
0.89 0.03 0.09
Matches are distributed among these distances:
33 14 0.45
34 17 0.55
ACGTcount: A:0.18, C:0.31, G:0.28, T:0.22
Consensus pattern (34 bp):
GGAGCCTCAGACACCATCGGCAACCTTGGTGCTT
Found at i:20912207 original size:76 final size:77
Alignment explanation
Indices: 20912061--20912216 Score: 251
Period size: 76 Copynumber: 2.0 Consensus size: 77
20912051 TGTATGTACG
* *
20912061 GGAGCCTCGAGCACCATCGGGACCTTGGTGGCTCGGATGTGCGGGAGCCTCAGACACTATCGGCA
1 GGAGCCTCGAGCACCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCAGACACCATCGGCA
20912126 ACCTTGGTGCTT
66 ACCTTGGTGCTT
** * *
20912138 GGAGCCTCGAGCACCATCGGCACCTTGGT-GCTTTGATGTGCGGGAGCCTCGGCCACCATCGGCA
1 GGAGCCTCGAGCACCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCAGACACCATCGGCA
20912202 ACCTTGGTGCTT
66 ACCTTGGTGCTT
20912214 GGA
1 GGA
20912217 TGTACGAGAG
Statistics
Matches: 73, Mismatches: 6, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
76 45 0.62
77 28 0.38
ACGTcount: A:0.16, C:0.29, G:0.33, T:0.21
Consensus pattern (77 bp):
GGAGCCTCGAGCACCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCAGACACCATCGGCA
ACCTTGGTGCTT
Found at i:20912208 original size:204 final size:207
Alignment explanation
Indices: 20911929--20912408 Score: 696
Period size: 204 Copynumber: 2.3 Consensus size: 207
20911919 TGGCTCGGAT
* * *
20911929 GTGTGGGAGCCTCGAGCACCATCGGCACCTCGGTGCTTGGATGTACGAGAGCCTCGACCACCATC
1 GTGTGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGACCACCATC
* * * *
20911994 GGTAACCTTGGTGCTTGGATGTGCGAGAGCCTCGAGCACCATCGATATCATGGTGCTTGTATGTA
66 GGCAACCTTGGTGCTTGGATGTACGAGAGCCTAGAGCACCATCGATAACATGGTGCTTGTATGTA
* * * * *
20912059 CGGGAGCCTCGAGCACCATCGGGACCTTGGTGGCTCGGATGTGCGGGAGCCTCAGACACTATCGG
131 CGGGAGCCTCGAACACCATCAGCACCTTGGTGGCTCGAATGTGCGGGAGCCTCAGACACCATCGG
20912124 CAACCTTGGTGC
196 CAACCTTGGTGC
* *
20912136 -T-T-GGAGCCTCGAGCACCATCGGCACCTTGGTGCTTTGATGTGCGGGAGCCTCGGCCACCATC
1 GTGTGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGACCACCATC
* * *
20912198 GGCAACCTTGGTGCTTGGATGTACGAGAGCCTAGAGCACCATCGGTAACTTGGTGCTTGTATGTG
66 GGCAACCTTGGTGCTTGGATGTACGAGAGCCTAGAGCACCATCGATAACATGGTGCTTGTATGTA
*
20912263 CGGGAGCCTTGAACACCATCAGCACCTTGGTGGCTCGAATGTGCGGGAGCCTCAGACACCATCGG
131 CGGGAGCCTCGAACACCATCAGCACCTTGGTGGCTCGAATGTGCGGGAGCCTCAGACACCATCGG
20912328 CAACCTTGGTGC
196 CAACCTTGGTGC
* * *
20912340 TTGGATGTGTGGGAGCCTCAAGCACCATCGGCACCTTAGTGCTTGGATGTGCGGGAGCCTCGAGC
1 ------GTGTGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGACC
20912405 ACCA
60 ACCA
20912409 AAGCTAAAGC
Statistics
Matches: 241, Mismatches: 23, Indels: 12
0.87 0.08 0.04
Matches are distributed among these distances:
204 184 0.76
205 1 0.00
206 1 0.00
211 1 0.00
212 1 0.00
213 53 0.22
ACGTcount: A:0.19, C:0.28, G:0.32, T:0.22
Consensus pattern (207 bp):
GTGTGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGACCACCATC
GGCAACCTTGGTGCTTGGATGTACGAGAGCCTAGAGCACCATCGATAACATGGTGCTTGTATGTA
CGGGAGCCTCGAACACCATCAGCACCTTGGTGGCTCGAATGTGCGGGAGCCTCAGACACCATCGG
CAACCTTGGTGC
Found at i:20917910 original size:157 final size:156
Alignment explanation
Indices: 20917622--20917932 Score: 568
Period size: 157 Copynumber: 2.0 Consensus size: 156
20917612 TTTTGAAAAA
20917622 ATGTCTGGCCAAAATATTAACATGGAGAAGTCAATGATTTATTTCAGTCCCAGTACCCCCGGTCC
1 ATGTCTGGCCAAAATATTAACATGGAGAAGTCAATGATTTATTTCAGTCCCAGTACCCCCGGTCC
** *
20917687 TCAACGCTTAAGTTTAAGTAGTATGCTTAAGGTGAAGGTGGTGAATAACCTGGATGCGTATCTGG
66 AAAACGCTTAAGTTTAAGTAGTATGCTTAAGGTGAAGGTGGTGAATAACCTGGACGCGTATCTGG
*
20917752 GGCTGCCCATTCTGATTAGCAAAAGG
131 GGCTACCCATTCTGATTAGCAAAAGG
*
20917778 ATGTCTGGCCAAAATATTAACATGGAGAAGTCGATGATTTATTTCAGTCCCAGTACCCCCGGTCC
1 ATGTCTGGCCAAAATATTAACATGGAGAAGTCAATGATTTATTTCAGTCCCAGTACCCCCGGTCC
20917843 AAAAACGCTTAAGTTTAAGTAGTATGCTTAAGGTGAAGGTGGTGAATAACCTGGACGCGTATCTG
66 -AAAACGCTTAAGTTTAAGTAGTATGCTTAAGGTGAAGGTGGTGAATAACCTGGACGCGTATCTG
20917908 GGGCTACCCATTCTGATTAGCAAAA
130 GGGCTACCCATTCTGATTAGCAAAA
20917933 AGAAGTCAAC
Statistics
Matches: 149, Mismatches: 5, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
156 64 0.43
157 85 0.57
ACGTcount: A:0.29, C:0.19, G:0.24, T:0.28
Consensus pattern (156 bp):
ATGTCTGGCCAAAATATTAACATGGAGAAGTCAATGATTTATTTCAGTCCCAGTACCCCCGGTCC
AAAACGCTTAAGTTTAAGTAGTATGCTTAAGGTGAAGGTGGTGAATAACCTGGACGCGTATCTGG
GGCTACCCATTCTGATTAGCAAAAGG
Found at i:20919762 original size:15 final size:15
Alignment explanation
Indices: 20919739--20919771 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
20919729 TAAAAAAAAA
*
20919739 AGCATGTCGCCTGGT
1 AGCAAGTCGCCTGGT
20919754 AGCAAGTCGCCTGGT
1 AGCAAGTCGCCTGGT
20919769 AGC
1 AGC
20919772 GAGTAGCACG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.18, C:0.27, G:0.33, T:0.21
Consensus pattern (15 bp):
AGCAAGTCGCCTGGT
Found at i:20925078 original size:43 final size:43
Alignment explanation
Indices: 20924963--20925934 Score: 571
Period size: 43 Copynumber: 22.9 Consensus size: 43
20924953 GGCAGCATAA
* * * *
20924963 GCCCTTGGTCGTGTGGGAGCCTCGAGCACCATCGGC-ACCTTG
1 GCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCAACCTAG
** *** * ** **
20925005 GTGC-TACACTGTGCGGGAGCCTCGAACACCATCGGCAATGTAG
1 GCCCTTGGTC-GTGCGAGAGCCTCGGGCACCATCGGCAACCTAG
* * *
20925048 GCCCTTAGTCATGCGAGAGCCTCGGGCACCATCGAC-ACCTAG
1 GCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCAACCTAG
** * * * * * *
20925090 GTGCTTGGAT-GTGTGGGAGCCTCGGACACAATCGGTAAACTAG
1 GCCCTTGG-TCGTGCGAGAGCCTCGGGCACCATCGGCAACCTAG
20925133 GCCCTTGGTCGTGC-AGGAGCCTCGGGCACCATCGGCAACCTAG
1 GCCCTTGGTCGTGCGA-GAGCCTCGGGCACCATCGGCAACCTAG
* *
20925176 GCCCTTGGTCGTGTGAGAGCTTCGGGCACCATCAGG--ACC-AGG
1 GCCCTTGGTCGTGCGAGAGCCTCGGGCACCATC-GGCAACCTA-G
** * * * ** *
20925218 GGGCTCGAAT-GTGCGGGAGTATCGGACACCATCGGCAACCTAG
1 GCCCTTG-GTCGTGCGAGAGCCTCGGGCACCATCGGCAACCTAG
*
20925261 GCCCTTGGTCGTGCGAGAGCCTTGGGCACCATCGGC-ACCTAG
1 GCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCAACCTAG
*** * * *
20925303 ATGCTCGGAT-GTGCG-GAAGCCTCGGAG-ACCATCGGCAAACTAA
1 GCCCTTGG-TCGTGCGAG-AGCCTCGG-GCACCATCGGCAACCTAG
* * *
20925346 GCCCTTGGTCATGCGAGAGCCTTGGGCACCATCGGC-ACCTCG
1 GCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCAACCTAG
** * * *
20925388 GTGCTTGGAT-GTGCAAGAGCCTCAGGCACCATCGGCAACCTAT
1 GCCCTTGG-TCGTGCGAGAGCCTCGGGCACCATCGGCAACCTAG
* * * * *
20925431 GCCCTTGGTTGTGCGGGAGCCTCGAGCACCATCGAC-ACCTTG
1 GCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCAACCTAG
** * * * * *
20925473 GTACTTGGAT-GTGCGGGAACCTTGGACACCATCGGGAACCTAG
1 GCCCTTGG-TCGTGCGAGAGCCTCGGGCACCATCGGCAACCTAG
* * * *
20925516 GCCCTTGGTTGTACAAGAGCCTCGAGCACCATCGGC-ACCTAG
1 GCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCAACCTAG
* * * * *
20925558 GCGCTTGAAT-GTGCGGGAGCCTCGAGCACCATCGGCAA-CTTG
1 GCCCTTG-GTCGTGCGAGAGCCTCGGGCACCATCGGCAACCTAG
** * * * *
20925600 GTGCTT-GTATGTGTGGGAGCCTCGAGCACCATCGGC-ACCTTAG
1 GCCCTTGGT-CGTGCGAGAGCCTCGGGCACCATCGGCAACC-TAG
* * * * * * ** *
20925643 TG-GCTCGGAT-GTACGGGAGCCTCAGACACCATCAACAACCTTG
1 -GCCCTTGG-TCGTGCGAGAGCCTCGGGCACCATCGGCAACCTAG
** * * * * *
20925686 GTGCTT-AT-GTACGGGAGCCTCGGACACCATCGGCAAACTAG
1 GCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCAACCTAG
* * *
20925727 GCCCTTGGTCGTGCGGGAGCCTCAGGCACCATCGGCATCCTAG
1 GCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCAACCTAG
* *
20925770 GCCCTTGGTCGTGCGAGAGCCTTGGGCACCATCAGC-ACCTAG
1 GCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCAACCTAG
** * * * * * *
20925812 GTGCTCGGAT-GTG-TAGGAGCCTCAGACACCATCGGTAAACTAG
1 GCCCTTGG-TCGTGCGA-GAGCCTCGGGCACCATCGGCAACCTAG
* * **
20925855 GCCCTTGGTCGCGCGAGAGCCTCGGGCACCATCGACAAAATAG
1 GCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCAACCTAG
* *
20925898 GCCCTTGGTCGTGCGAGAGCCTCAGGCACCACCGGCA
1 GCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCA
20925935 CCTTGGTGGC
Statistics
Matches: 709, Mismatches: 175, Indels: 91
0.73 0.18 0.09
Matches are distributed among these distances:
40 1 0.00
41 41 0.06
42 278 0.39
43 374 0.53
44 14 0.02
45 1 0.00
ACGTcount: A:0.20, C:0.30, G:0.31, T:0.19
Consensus pattern (43 bp):
GCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCAACCTAG
Found at i:20925108 original size:85 final size:85
Alignment explanation
Indices: 20924978--20925176 Score: 240
Period size: 85 Copynumber: 2.3 Consensus size: 85
20924968 TGGTCGTGTG
* * *
20924978 GGAGCCTCGAGCACCATCGGCACCTTGGTGCTACACTGTGCGGGAGCCTCGAACACCATCGGCAA
1 GGAGCCTCGGGCACCATCGGCACCTAGGTGCTACACTGTGCGGGAGCCTCGAACACAATCGGCAA
**
20925043 TGTAGGCCCTTAGTCATGC-
66 ACTAGGCCCTTAGTCATGCA
* ** * * *
20925062 GAGAGCCTCGGGCACCATCGACACCTAGGTGCTTGGA-TGTGTGGGAGCCTCGGACACAATCGGT
1 G-GAGCCTCGGGCACCATCGGCACCTAGGTGC-TACACTGTGCGGGAGCCTCGAACACAATCGGC
* *
20925126 AAACTAGGCCCTTGGTCGTGCA
64 AAACTAGGCCCTTAGTCATGCA
20925148 GGAGCCTCGGGCACCATCGGCAACCTAGG
1 GGAGCCTCGGGCACCATCGGC-ACCTAGG
20925177 CCCTTGGTCG
Statistics
Matches: 97, Mismatches: 14, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
84 1 0.01
85 86 0.89
86 10 0.10
ACGTcount: A:0.21, C:0.30, G:0.31, T:0.18
Consensus pattern (85 bp):
GGAGCCTCGGGCACCATCGGCACCTAGGTGCTACACTGTGCGGGAGCCTCGAACACAATCGGCAA
ACTAGGCCCTTAGTCATGCA
Found at i:20925194 original size:128 final size:126
Alignment explanation
Indices: 20925015--20926018 Score: 549
Period size: 128 Copynumber: 7.9 Consensus size: 126
20925005 GTGCTACACT
* ** ** * *
20925015 GTGCGGGAGCCTCGAACACCATCGGCAATGTAGGCCCTTAGTCATGCGAGAGCCTCGGGCACCAT
1 GTGCAGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGT-GTGCGAGAGCCTCGGGCACCAT
* * *
20925080 CGACACCTAGGTGCTTGGATGTGTGGGAGCCTCGGACACAATCGGTAAACTAGGCCCTTGGTC
65 CGACACCTAGGTGCTTGGATGTGCGGGAGCCTCGGACACCATCGG-AACCTAGGCCCTTGGTC
* *
20925143 GTGCAGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGTGAGAGCTTCGGGCACCAT
1 GTGCAGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGT-GTGCGAGAGCCTCGGGCACCAT
* * * * **
20925208 C-AGGACC-AGGGGGCTCGAATGTGCGGGAGTATCGGACACCATCGGCAACCTAGGCCCTTGGTC
65 CGA-CACCTA-GGTGCTTGGATGTGCGGGAGCCTCGGACACCATCGG-AACCTAGGCCCTTGGTC
* *** *
20925271 GTGC-GAGAGCCTTGGGCACCATCGGC-ACCTAGATGCTCGGATGTGCG-GAAGCCTCGGAG-AC
1 GTGCAG-GAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TGTGCGAG-AGCCTCGG-GCAC
* * * ** * * * * * * **
20925332 CATCGGCAAACTAAGCCCTTGG-TCATGCGAGAGCCTTGGGCACCATCGGCACCTCGGTGCTTGG
62 CATCGAC-ACCTAGGTGCTTGGAT-GTGCGGGAGCCTCGGACACCATCGGAACCTAGGCCCTTGG
20925396 AT-
125 -TC
* * * * *
20925398 GTGCAAGAGCCTCAGGCACCATCGGCAACCTATGCCCTTGGTTGTGCGGGAGCCTCGAGCACCAT
1 GTGCAGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TGTGCGAGAGCCTCGGGCACCAT
* * * * *
20925463 CGACACCTTGGTACTTGGATGTGCGGGAACCTTGGACACCATCGGGAACCTAGGCCCTTGGTT
65 CGACACCTAGGTGCTTGGATGTGCGGGAGCCTCGGACACCATC-GGAACCTAGGCCCTTGGTC
* * * * * * *
20925526 GTACAAGAGCCTCGAGCACCATCGGC-ACCTAGGCGCTTGAATGTGCGGGAGCCTCGAGCACCAT
1 GTGCAGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTG-GTGTGCGAGAGCCTCGGGCACCAT
* * * * * * * *
20925590 CGGCAACTTGGTGCTTGTATGTGTGGGAGCCTC-GAGCACCATCGGCACCTTAGTG-GCTCGGAT
65 CGACACCTAGGTGCTTGGATGTGCGGGAGCCTCGGA-CACCATCGGAACC-TAG-GCCCTTGG-T
20925653 -
126 C
* * * * ** * ** * * * *
20925653 GTACGGGAGCCTCAGACACCATCAACAACCTTGGTGCTT-ATGTACGGGAGCCTCGGACACCATC
1 GTGCAGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTGTGCGAGAGCCTCGGGCACCATC
* * ** *
20925717 GGCAAACTAGGCCCTTGG-TCGTGCGGGAGCCTCAGG-CACCATCGGCATCCTAGGCCCTTGGTC
66 GAC-ACCTAGGTGCTTGGAT-GTGCGGGAGCCTC-GGACACCATCGG-AACCTAGGCCCTTGGTC
* * ** * * * *
20925780 GTGC-GAGAGCCTTGGGCACCATCAGC-ACCTAGGTGCTCGGATGTG-TAGGAGCCTCAGACACC
1 GTGCAG-GAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TGTGCGA-GAGCCTCGGGCACC
* ** * * * * **
20925842 ATCGGTA-AACTAGGCCCTTGG-TCGCGCGAGAGCCTCGGGCACCATCGACAAAATAGGCCCTTG
63 ATC-G-ACACCTAGGTGCTTGGAT-GTGCGGGAGCCTCGGACACCATCG-GAACCTAGGCCCTTG
20925905 GTC
124 GTC
* * * ** * * *
20925908 GTGC-GAGAGCCTCAGGCACCACCGGC-ACCTTGGTGGCTCGGATGTGCGGGAGCCTCGGACACC
1 GTGCAG-GAGCCTCGGGCACCATCGGCAACCTAGG-CCCTTGG-TGTGCGAGAGCCTCGGGCACC
* * * * * *
20925971 ATTGACAACCTTGGTGTTTGGATGTGCGGCATCCTCGAACACCATCGG
63 ATCGAC-ACCTAGGTGCTTGGATGTGCGGGAGCCTCGGACACCATCGG
20926019 TACTGTTGGA
Statistics
Matches: 686, Mismatches: 146, Indels: 88
0.75 0.16 0.10
Matches are distributed among these distances:
126 47 0.07
127 247 0.36
128 334 0.49
129 57 0.08
130 1 0.00
ACGTcount: A:0.20, C:0.30, G:0.31, T:0.19
Consensus pattern (126 bp):
GTGCAGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTGTGCGAGAGCCTCGGGCACCATC
GACACCTAGGTGCTTGGATGTGCGGGAGCCTCGGACACCATCGGAACCTAGGCCCTTGGTC
Found at i:20925248 original size:85 final size:84
Alignment explanation
Indices: 20925143--20925888 Score: 591
Period size: 85 Copynumber: 8.8 Consensus size: 84
20925133 GCCCTTGGTC
* * *
20925143 GTGCAGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGTGAGAGCTTCGGGCACCAT
1 GTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCTTCGGGCACCAT
* * *
20925208 CAGG-ACCAGGGGGCTCGAAT
66 C-GGCACCA-GGTGCTTGGAT
**
20925228 GTGCGGGAGTATCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTT-GGGCACCA
1 GTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAG-CTTCGGGCACCA
* *
20925292 TCGGCACCTAGATGCTCGGAT
65 TCGGCACC-AGGTGCTTGGAT
* * * * *
20925313 GTGCGGAAGCCTCGGAGACCATCGGCAAACTAAGCCCTTGGTCATGCGAGAGCCTT-GGGCACCA
1 GTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAG-CTTCGGGCACCA
*
20925377 TCGGCACCTCGGTGCTTGGAT
65 TCGGCACC-AGGTGCTTGGAT
** * * * * *
20925398 GTGCAAGAGCCTCAGG-CACCATCGGCAACCTATGCCCTTGGTTGTGCGGGAGCCTCGAGCACCA
1 GTGCGGGAGCCTC-GGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCTTCGGGCACCA
* * *
20925462 TCGACACCTTGGTACTTGGAT
65 TCGGCACC-AGGTGCTTGGAT
* * * * * * * *
20925483 GTGCGGGAACCTTGGACACCATCGGGAACCTAGGCCCTTGGTTGTACAAGAGCCTCGAGCACCAT
1 GTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCTTCGGGCACCAT
* *
20925548 CGGCACCTAGGCGCTTGAAT
66 CGGCACC-AGGTGCTTGGAT
* ** * * * * *
20925568 GTGCGGGAGCCTC-GAGCACCATCGGCAA-CTTGGTGCTT-GTATGTGTGGGAGCCTCGAGCACC
1 GTGCGGGAGCCTCGGA-CACCATCGGCAACCTAGGCCCTTGGT-CGTGCGAGAGCTTCGGGCACC
*
20925630 ATCGGCACCTTA-GTGGCTCGGAT
64 ATCGGCACC--AGGT-GCTTGGAT
* * ** * ** * * * * *
20925653 GTACGGGAGCCTCAGACACCATCAACAACCTTGGTGCTT-AT-GTACGGGAGCCTCGGACACCAT
1 GTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCTTCGGGCACCAT
* **
20925716 CGGCAAACTAGGCCCTTGG-T
66 CGGC--ACCAGGTGCTTGGAT
*
20925736 CGTGCGGGAGCCTCAGG-CACCATCGGCATCCTAGGCCCTTGGTCGTGCGAGAGCCTT-GGGCAC
1 -GTGCGGGAGCCTC-GGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAG-CTTCGGGCAC
* *
20925799 CATCAGCACCTAGGTGCTCGGAT
63 CATCGGCACC-AGGTGCTTGGAT
** * * * * *
20925822 GTGTAGGAGCCTCAGACACCATCGGTAAACTAGGCCCTTGGTCGCGCGAGAGCCTCGGGCACCAT
1 GTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCTTCGGGCACCAT
20925887 CG
66 CG
20925889 ACAAAATAGG
Statistics
Matches: 539, Mismatches: 98, Indels: 48
0.79 0.14 0.07
Matches are distributed among these distances:
83 3 0.01
84 103 0.19
85 391 0.73
86 40 0.07
87 2 0.00
ACGTcount: A:0.20, C:0.30, G:0.31, T:0.19
Consensus pattern (84 bp):
GTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCTTCGGGCACCAT
CGGCACCAGGTGCTTGGAT
Found at i:20925326 original size:170 final size:169
Alignment explanation
Indices: 20925150--20925888 Score: 708
Period size: 170 Copynumber: 4.4 Consensus size: 169
20925140 GTCGTGCAGG
* * *
20925150 AGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGTGAGAGCTTCGGGCACCATCAGG-AC
1 AGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATC-GGCAC
* * **
20925214 CAGGGGGCTCGAATGTGCGGGAGTATC-GGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGAG
65 CA-GGCGCTTGAATGTGCGGGAGCCTCAGG-CACCATCGGCAACCTAGGCCCTTGGTCGTGCGAG
* * *
20925278 AGCCTTGGGCACCATCGGCACCTAGATGCTCGGATGTGCGGA
128 AGCCTCGAGCACCATCGGCACCTAGGTGCTCGGATGTGCGGA
* * * * *
20925320 AGCCTCGGAGACCATCGGCAAACTAAGCCCTTGGTCATGCGAGAGCCTTGGGCACCATCGGCACC
1 AGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCACC
* * * ** * * *
20925385 TCGGTGCTTGGATGTGCAAGAGCCTCAGGCACCATCGGCAACCTATGCCCTTGGTTGTGCGGGAG
66 -AGGCGCTTGAATGTGCGGGAGCCTCAGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAG
* * * *
20925450 CCTCGAGCACCATCGACACCTTGGTACTTGGATGTGCGGGA
130 CCTCGAGCACCATCGGCACCTAGGTGCTCGGATGTGC-GGA
* * * * * *
20925491 A-CCTTGGACACCATCGGGAACCTAGGCCCTTGGTTGTACAAGAGCCTCGAGCACCATCGGCACC
1 AGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCACC
* ** * * *
20925555 TAGGCGCTTGAATGTGCGGGAGCCTC-GAGCACCATCGGCAA-CTTGGTGCTT-GTATGTGTGGG
66 -AGGCGCTTGAATGTGCGGGAGCCTCAG-GCACCATCGGCAACCTAGGCCCTTGGT-CGTGCGAG
* *
20925617 AGCCTCGAGCACCATCGGCACCTTA-GTGGCTCGGATGTACGGG
128 AGCCTCGAGCACCATCGGCACC-TAGGT-GCTCGGATGTGCGGA
* ** * ** * * * *
20925660 AGCCTCAGACACCATCAACAACCTTGGTGCTT-AT-GTACGGGAGCCTCGGACACCATCGGCAAA
1 AGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGC--A
* * * *
20925723 CTAGGCCCTTG-GTCGTGCGGGAGCCTCAGGCACCATCGGCATCCTAGGCCCTTGGTCGTGCGAG
64 CCAGGCGCTTGAAT-GTGCGGGAGCCTCAGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAG
* * * *
20925787 AGCCTTGGGCACCATCAGCACCTAGGTGCTCGGATGTGTAGG-
128 AGCCTCGAGCACCATCGGCACCTAGGTGCTCGGATGTG-CGGA
* * * *
20925829 AGCCTCAGACACCATCGGTAAACTAGGCCCTTGGTCGCGCGAGAGCCTCGGGCACCATCG
1 AGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCG
20925889 ACAAAATAGG
Statistics
Matches: 457, Mismatches: 93, Indels: 37
0.78 0.16 0.06
Matches are distributed among these distances:
168 25 0.05
169 113 0.25
170 291 0.64
171 28 0.06
ACGTcount: A:0.20, C:0.30, G:0.31, T:0.19
Consensus pattern (169 bp):
AGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCACC
AGGCGCTTGAATGTGCGGGAGCCTCAGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGC
CTCGAGCACCATCGGCACCTAGGTGCTCGGATGTGCGGA
Found at i:20925352 original size:213 final size:213
Alignment explanation
Indices: 20924963--20925424 Score: 558
Period size: 213 Copynumber: 2.2 Consensus size: 213
20924953 GGCAGCATAA
* ** * * *
20924963 GCCCTTGGTCGTGTGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTACACTGTGCGGGAGCCTC
1 GCCCTTGGTCGTGTGAGAGCCTCGAGCACCATCGGCACCAGGGGGCTACAATGTGCGGGAGCATC
** *
20925028 GAACACCATCGGCAATGTAGGCCCTTAGTCATGCGAGAGCCTCGGGCACCATCGACACCTAGGTG
66 GAACACCATCGGCAACCTAGGCCCTTAGTCATGCGAGAGCCTCGGGCACCATCGACACCTAGATG
* * * * * *
20925093 CTTGGATGTGTGGGAGCCTCGGACACAATCGGTAAACTAGGCCCTTGGTCGTGC-AGGAGCCTCG
131 CTCGGATGTGCGGAAGCCTCGGACACAATCGGCAAACTAAGCCCTTGGTCATGCGA-GAGCCTCG
20925157 GGCACCATCGGCAACCTAG
195 GGCACCATCGGCAACCTAG
* * *
20925176 GCCCTTGGTCGTGTGAGAGCTTCGGGCACCATCAGG-ACCAGGGGGCT-CGAATGTGCGGGAGTA
1 GCCCTTGGTCGTGTGAGAGCCTCGAGCACCATC-GGCACCAGGGGGCTAC-AATGTGCGGGAGCA
* * * * *
20925239 TCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTTGGGCACCATCGGCACCTAGA
64 TCGAACACCATCGGCAACCTAGGCCCTTAGTCATGCGAGAGCCTCGGGCACCATCGACACCTAGA
* * *
20925304 TGCTCGGATGTGCGGAAGCCTCGGAGACCATCGGCAAACTAAGCCCTTGGTCATGCGAGAGCCTT
129 TGCTCGGATGTGCGGAAGCCTCGGACACAATCGGCAAACTAAGCCCTTGGTCATGCGAGAGCCTC
*
20925369 GGGCACCATCGGC-ACCTCG
194 GGGCACCATCGGCAACCTAG
** **
20925388 GTGCTTGGAT-GTGCAAGAGCCTC-AGGCACCATCGGCA
1 GCCCTTGG-TCGTGTGAGAGCCTCGA-GCACCATCGGCA
20925425 ACCTATGCCC
Statistics
Matches: 210, Mismatches: 33, Indels: 13
0.82 0.13 0.05
Matches are distributed among these distances:
211 2 0.01
212 31 0.15
213 174 0.83
214 3 0.01
ACGTcount: A:0.19, C:0.30, G:0.32, T:0.19
Consensus pattern (213 bp):
GCCCTTGGTCGTGTGAGAGCCTCGAGCACCATCGGCACCAGGGGGCTACAATGTGCGGGAGCATC
GAACACCATCGGCAACCTAGGCCCTTAGTCATGCGAGAGCCTCGGGCACCATCGACACCTAGATG
CTCGGATGTGCGGAAGCCTCGGACACAATCGGCAAACTAAGCCCTTGGTCATGCGAGAGCCTCGG
GCACCATCGGCAACCTAG
Found at i:20925605 original size:212 final size:211
Alignment explanation
Indices: 20925330--20925891 Score: 616
Period size: 212 Copynumber: 2.7 Consensus size: 211
20925320 AGCCTCGGAG
** * * * *
20925330 ACCATCGGCAAACTAAGCCCTTGGTCATGCGAGAGCCTTGGGCACCATCGGCACCTCGGTGCTTG
1 ACCATCGGCATCCTAGGCCCTTGATCGTGCGAGAGCCTTGGGCACCATCGGCACCTAGGTGCTTG
* *
20925395 GATGTGCAAGAGCCTCAGGCACCATCGGCAACCTATGCCCTTGGTTGTGCGGGAGCCTCGAGCAC
66 GATGTGTAGGAGCCTCAGGCACCATCGGCAACCTATGCCCTTGGTTGTGCGGGAGCCTCGAGCAC
* * * *
20925460 CATCGACACCTTGGTACTTGGATGTGCGGGAACCTTGGACACCATCGGGAACCTAGGCCCTTGGT
131 CATCGACACCTTGGTACTT--ATGTACGGGAACCTCGGACACCATCGGCAAACTAGGCCCTTGGT
*
20925525 TGTACAAGAGCCTC-GAGC
194 CGTACAAGAGCCTCAG-GC
* * * * * *
20925543 ACCATCGGCA-CCTAGGCGCTTGAAT-GTGCGGGAGCCTCGAGCACCATCGGCAACTTGGTGCTT
1 ACCATCGGCATCCTAGGCCCTTG-ATCGTGCGAGAGCCTTGGGCACCATCGGCACCTAGGTGCTT
* * * * * *
20925606 GTATGTGTGGGAGCCTC-GAGCACCATCGGC-ACCTTAGTG-GCTCGGATGTACGGGAGCCTC-A
65 GGATGTGTAGGAGCCTCAG-GCACCATCGGCAACC-TA-TGCCCTTGGTTGTGCGGGAGCCTCGA
* * *
20925667 GACACCATCAACAACCTTGGTGCTTATGTACGGGAGCCTCGGACACCATCGGCAAACTAGGCCCT
127 G-CACCATCGAC-ACCTTGGTACTTATGTACGGGAACCTCGGACACCATCGGCAAACTAGGCCCT
* **
20925732 TGGTCGTGCGGGAGCCTCAGGC
190 TGGTCGTACAAGAGCCTCAGGC
* * *
20925754 ACCATCGGCATCCTAGGCCCTTGGTCGTGCGAGAGCCTTGGGCACCATCAGCACCTAGGTGCTCG
1 ACCATCGGCATCCTAGGCCCTTGATCGTGCGAGAGCCTTGGGCACCATCGGCACCTAGGTGCTTG
* * * * * * * *
20925819 GATGTGTAGGAGCCTCAGACACCATCGGTAAACTAGGCCCTTGGTCGCGCGAGAGCCTCGGGCAC
66 GATGTGTAGGAGCCTCAGGCACCATCGGCAACCTATGCCCTTGGTTGTGCGGGAGCCTCGAGCAC
20925884 CATCGACA
131 CATCGACA
20925892 AAATAGGCCC
Statistics
Matches: 283, Mismatches: 53, Indels: 28
0.78 0.15 0.08
Matches are distributed among these distances:
211 70 0.25
212 185 0.65
213 28 0.10
ACGTcount: A:0.20, C:0.30, G:0.30, T:0.20
Consensus pattern (211 bp):
ACCATCGGCATCCTAGGCCCTTGATCGTGCGAGAGCCTTGGGCACCATCGGCACCTAGGTGCTTG
GATGTGTAGGAGCCTCAGGCACCATCGGCAACCTATGCCCTTGGTTGTGCGGGAGCCTCGAGCAC
CATCGACACCTTGGTACTTATGTACGGGAACCTCGGACACCATCGGCAAACTAGGCCCTTGGTCG
TACAAGAGCCTCAGGC
Found at i:20944922 original size:22 final size:22
Alignment explanation
Indices: 20944889--20944942 Score: 58
Period size: 22 Copynumber: 2.5 Consensus size: 22
20944879 TTTAAGTCGA
20944889 TTTAAT-TAGTTTATTACA-GCTT
1 TTTAATAT-GTTTATTACATG-TT
* *
20944911 TTTAATATGTTTGTTGCATGTT
1 TTTAATATGTTTATTACATGTT
20944933 TTTAATATGT
1 TTTAATATGT
20944943 CAAGTTTTAT
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
22 26 0.93
23 2 0.07
ACGTcount: A:0.24, C:0.06, G:0.13, T:0.57
Consensus pattern (22 bp):
TTTAATATGTTTATTACATGTT
Found at i:20945152 original size:31 final size:32
Alignment explanation
Indices: 20945096--20945162 Score: 77
Period size: 31 Copynumber: 2.1 Consensus size: 32
20945086 TTATTTATAT
20945096 AGGTTAGCCAAATGTGTGGGATCA-TTTAACA
1 AGGTTAGCCAAATGTGTGGGATCATTTTAACA
* *
20945127 AGGTTAGCCGAAT-T-TGGAGATTCATTTTAGCA
1 AGGTTAGCCAAATGTGTGG-GA-TCATTTTAACA
20945159 AGGT
1 AGGT
20945163 GCATGCATGT
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
29 3 0.10
30 3 0.10
31 15 0.48
32 10 0.32
ACGTcount: A:0.30, C:0.12, G:0.27, T:0.31
Consensus pattern (32 bp):
AGGTTAGCCAAATGTGTGGGATCATTTTAACA
Found at i:20945982 original size:22 final size:22
Alignment explanation
Indices: 20945954--20945997 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
20945944 TTTTGAACCA
20945954 TTACCATTTCGTACCAAATCCC
1 TTACCATTTCGTACCAAATCCC
*
20945976 TTACCATTTCGTACCAATTCCC
1 TTACCATTTCGTACCAAATCCC
20945998 AAATACCAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.25, C:0.36, G:0.05, T:0.34
Consensus pattern (22 bp):
TTACCATTTCGTACCAAATCCC
Found at i:20951665 original size:43 final size:42
Alignment explanation
Indices: 20951618--20953689 Score: 493
Period size: 43 Copynumber: 48.6 Consensus size: 42
20951608 TCGGATGTCG
*
20951618 GGGAGCCTGGGACACCATCGGCAAACTAGGCCCTTGGTCGTAC
1 GGGAGCCTGGG-CACCATCGGCAAACTAGGCCCTTGGTCGTGC
* * * **
20951661 GGGAGCCTCGGGCACCATCGG-TACCTCGGTGCTTGGAT-GTGC
1 GGGAGCCT-GGGCACCATCGGCAAACTAGGCCCTTGG-TCGTGC
* * ** * * *
20951703 AGGTGCCTCGGGCACCATCGATAAAATAGGCCATTGGTTGTGC
1 GGGAGCCT-GGGCACCATCGGCAAACTAGGCCCTTGGTCGTGC
** * * * **
20951746 AAGAGCCTCGGCCACCATCGG-GACCTAGGTGCTTGGAT-GTGC
1 GGGAGCCT-GGGCACCATCGGCAAACTAGGCCCTTGG-TCGTGC
* * * * * * *
20951788 GAGAGCCTCGGACACCATCGACAAACGAAGCCTTTGGTTGTGC
1 GGGAGCCT-GGGCACCATCGGCAAACTAGGCCCTTGGTCGTGC
* *
20951831 GGGAGCCTCGGGCACCATCGGTAACCTAGGCCCTTGGTCGTGC
1 GGGAGCCT-GGGCACCATCGGCAAACTAGGCCCTTGGTCGTGC
* * * * * *
20951874 GAGAGCCTCAGGCACCATCGGC-ATCTGGGCGCTCGGATC-TGC
1 GGGAGCCT-GGGCACCATCGGCAAACTAGGCCCTTGG-TCGTGC
* * * * *
20951916 GGGAGCGTCGGACACCATCGGGAAACTAGGTCCTTGGTCGTGT
1 GGGAGCCT-GGGCACCATCGGCAAACTAGGCCCTTGGTCGTGC
* * * *
20951959 GGGAGCCTCGAGCACCATCGG-AACCTCAGTG--CTATGAT-GTGT
1 GGGAGCCT-GGGCACCATCGGCAAACT-AG-GCCCT-TGGTCGTGC
** * ** *
20952001 GGGAGCCTCAG-ACAATGTCGGCATCCTAGGCCCTTGGTCGAGC
1 GGGAGCCTGGGCACCA--TCGGCAAACTAGGCCCTTGGTCGTGC
* ** * * ** *
20952044 GGGAGCCTTGAGCACCATCAAC-ACCTTGGTGCTTGGAT-TTGC
1 GGGAGCC-TGGGCACCATCGGCAAACTAGGCCCTTGG-TCGTGC
* * * ** * * *
20952086 GAGAACCTCGGACACCATC-AAAAACCTAGGCCGTTGGTTGTGT
1 GGGAGCCT-GGGCACCATCGGCAAA-CTAGGCCCTTGGTCGTGC
* * * *
20952129 GAGAGCCTCAGGTACCATCGGCAAACTAGGCCTTTGGTCGTGC
1 GGGAGCCT-GGGCACCATCGGCAAACTAGGCCCTTGGTCGTGC
* * * * **
20952172 AGGAGTCTCGGGCA-CATTCGGC-ACCTTGGTGCTTGGAT-GTGC
1 GGGAGCCT-GGGCACCA-TCGGCAAACTAGGCCCTTGG-TCGTGC
* * * * *
20952214 GGAAGCCTTGGGCACCATCGACAAAAC-AGGCACTTCGTCGTGT
1 GGGAGCC-TGGGCACCATCGGC-AAACTAGGCCCTTGGTCGTGC
* * * ** *
20952257 GAGAGCCTCGGCCACCATC-G-AAACCTAAGTGCTTGGAT-GTCC
1 GGGAGCCT-GGGCACCATCGGCAAA-CTAGGCCCTTGG-TCGTGC
* * *
20952299 GGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTCGTCGTGT
1 GGGAGCCT-GGGCACCATCGGCAAACTAGGCCCTTGGTCGTGC
* * * * *
20952342 GAGAGCCTCGGGCACCATCGACTACCTAGGCTCTTGGTCGTGC
1 GGGAGCCT-GGGCACCATCGGCAAACTAGGCCCTTGGTCGTGC
* * * * * * * *
20952385 GAGAGTCTTGGGCACCATCGGC-ACCTGGGCGCTCAGAT-GTAC
1 GGGAG-CCTGGGCACCATCGGCAAACTAGGCCCT-TGGTCGTGC
* * * * *
20952427 GGGAGCATCAGACACCATCGGCAAACTAGGCCCTTGTTCATGC
1 GGGAGCCT-GGGCACCATCGGCAAACTAGGCCCTTGGTCGTGC
* * * ** *
20952470 GGGAGCCTCGGGCACCATCAGC-ACCTCGGTGCTATGAT-GTGC
1 GGGAGCCT-GGGCACCATCGGCAAACTAGGCCCT-TGGTCGTGC
** * * * * * *
20952512 AAGAGCAT-CGAACAAT-GTCACAATCCTCGGCCCTTGGTCGTGC
1 GGGAGCCTGGGCACCATCGGCA-AA--CTAGGCCCTTGGTCGTGC
* * * * * * **
20952555 TGAAGCCTCGAGCACCATCGAC-ACCTTGGTGCTTGGAT-GTGC
1 GGGAGCCT-GGGCACCATCGGCAAACTAGGCCCTTGG-TCGTGC
* * * * ***
20952597 GGGAACCTCGGACACAATCAG-AAACCTAGGTGATTGGAT-GTGC
1 GGGAGCCT-GGGCACCATCGGCAAA-CTAGGCCCTTGG-TCGTGC
* * * *
20952640 GGAAGCCTCGGGCACTACCGGCAAACTAGGCCCTTGGTCATGC
1 GGGAGCCT-GGGCACCATCGGCAAACTAGGCCCTTGGTCGTGC
* * *
20952683 GGGAGCCACGGGCACCATCGGCAGAA-TAGGCCTTTGGTCGTAC
1 GGGAGCC-TGGGCACCATCGGCA-AACTAGGCCCTTGGTCGTGC
* * * * * * * ** *
20952726 GAGAACCTCGGCCACCATTGG-GACCTTGGTGCTTGGAT-GTAC
1 GGGAGCCT-GGGCACCATCGGCAAACTAGGCCCTTGG-TCGTGC
* * ** * *
20952768 GGGAGCCTCAGACACCATCAACAAACTATGCCCTTGGTTGTGC
1 GGGAGCCT-GGGCACCATCGGCAAACTAGGCCCTTGGTCGTGC
* * * *
20952811 AGGAGCCTCGGGCACTATCGGTAACCTAGGCCCTTGGTCGTGC
1 GGGAGCCT-GGGCACCATCGGCAAACTAGGCCCTTGGTCGTGC
* * * ** * *
20952854 GAGAGCCTCGGGCACCATCGGC-ACCTGGGTACTTAGAT-GTGT
1 GGGAGCCT-GGGCACCATCGGCAAACTAGGCCCTT-GGTCGTGC
* * * * *
20952896 GGGAGCGTCGGACACCATCAGAAAACTAGGCCCTTGGTCGTGT
1 GGGAGCCT-GGGCACCATCGGCAAACTAGGCCCTTGGTCGTGC
* *
20952939 GGGAGCCTCGGGCACCATCGGC-ACCTCAGTG--CTATGAT-GTGC
1 GGGAGCCT-GGGCACCATCGGCAAACT-AG-GCCCT-TGGTCGTGC
* * * ** * **
20952981 GGGAGCCT-CGAACAATGTCGGCATCCTAGGCCTTTGGTCGTAT
1 GGGAGCCTGGGCACCA--TCGGCAAACTAGGCCCTTGGTCGTGC
* * * ** *
20953024 GGGAGCCTCGAGCACCATCGAC-AACTTGGTGCTTGGAT-GTGA
1 GGGAGCCT-GGGCACCATCGGCAAACTAGGCCCTTGG-TCGTGC
* * * * * *
20953066 GGGAACCTCGGACACCATCGACAACCTAGGCCCTTGGTCTTAC
1 GGGAGCCT-GGGCACCATCGGCAAACTAGGCCCTTGGTCGTGC
* *
20953109 GAGG-GCCTTGGGCACCATCGGCAAACTATGCCCTTGGTCATGC
1 G-GGAGCC-TGGGCACCATCGGCAAACTAGGCCCTTGGTCGTGC
* * * * **
20953152 GAGAGCCTCGGGCACCATCAGC-ACCTCGGTACTTGGAT-GTGC
1 GGGAGCCT-GGGCACCATCGGCAAACTAGGCCCTTGG-TCGTGC
* * * *
20953194 GGGAGCCTCGAGCACCATCGGCAAAATAGGCCTTTGGTTGTGC
1 GGGAGCCT-GGGCACCATCGGCAAACTAGGCCCTTGGTCGTGC
* * * ** *
20953237 GAGAGCCTCGGCCACCATCAGG--ACCTAGGTGCTCGGAT-GTGC
1 GGGAGCCT-GGGCACCATC-GGCAAACTAGGCCCTTGG-TCGTGC
* * * *
20953279 GAGAGGCTCGGACACCATCAGCAAACTAGGCCCTTGGTCGTGC
1 GGGAGCCT-GGGCACCATCGGCAAACTAGGCCCTTGGTCGTGC
* *
20953322 GGGAGCCTCGGGCACCATCGGCAACCGAGGCCCTTGGTCGTGC
1 GGGAGCCT-GGGCACCATCGGCAAACTAGGCCCTTGGTCGTGC
* * * * * ** * *
20953365 -GAAGGCTTCGGGCACCATCGAC-ACCTGGGTGCTCAGAT-GTGC
1 GGGA-GCCT-GGGCACCATCGGCAAACTAGGCCCT-TGGTCGTGC
** * * *
20953407 GGGAGTGTCGGACACTATCGGCAAACTAGGCCCTTGGTCGTAC
1 GGGAGCCT-GGGCACCATCGGCAAACTAGGCCCTTGGTCGTGC
* * * * * ** *
20953450 GGGAACCTCAGGCACCATCGG-TACCTCGGTGCTATGAT-GTGC
1 GGGAGCCT-GGGCACCATCGGCAAACTAGGCCCT-TGGTCGTGC
** * ** *
20953492 GGGAGCCTCAG-ACAATGTCGGCATCCTAGGCCCTTGGTCGTGT
1 GGGAGCCTGGGCACCA--TCGGCAAACTAGGCCCTTGGTCGTGC
* * * * **
20953535 GGGAGCCTCGAGTACCATCGAC-ACCGT-GGTGCTTGGAT-GTGC
1 GGGAGCCT-GGGCACCATCGGCAAAC-TAGGCCCTTGG-TCGTGC
* * * * *
20953577 AGGAACCTCGGACACCATCGGCAACCTAGGCCCTTAGTCGTGC
1 GGGAGCCT-GGGCACCATCGGCAAACTAGGCCCTTGGTCGTGC
* * * * ** *
20953620 GAGAGCCTCGGACACCATCGG-TACCTAGGTACTCGGAT-GTGC
1 GGGAGCCT-GGGCACCATCGGCAAACTAGGCCCTTGG-TCGTGC
* *
20953662 GGGAGCCTCGGACACCATCAGCAAACTA
1 GGGAGCCT-GGGCACCATCGGCAAACTA
20953690 AGGTCGGGGT
Statistics
Matches: 1472, Mismatches: 442, Indels: 230
0.69 0.21 0.11
Matches are distributed among these distances:
39 1 0.00
40 18 0.01
41 13 0.01
42 573 0.39
43 819 0.56
44 31 0.02
45 15 0.01
46 2 0.00
ACGTcount: A:0.20, C:0.29, G:0.31, T:0.20
Consensus pattern (42 bp):
GGGAGCCTGGGCACCATCGGCAAACTAGGCCCTTGGTCGTGC
Found at i:20951722 original size:85 final size:85
Alignment explanation
Indices: 20951578--20953689 Score: 520
Period size: 85 Copynumber: 24.8 Consensus size: 85
20951568 AACTTAACAA
* ** * * *
20951578 GAGCCTCAGGCACCATCGACACCTAGGCGCTCGGATGT-CGGGGAGCCT-GGGACACCATCGGCA
1 GAGCCTCGGGCACCATCGGTACCTAGGCGCTTGGATGTGC-GAGAGCCTCGGG-CACCATCGACA
* * *
20951641 AACTAGGCCCTTGGTCGTACGG
64 AACTAGGCCATTGGTTGTGCGG
* * * *
20951663 GAGCCTCGGGCACCATCGGTACCTCGGTGCTTGGATGTGC-AGGTGCCTCGGGCACCATCGATAA
1 GAGCCTCGGGCACCATCGGTACCTAGGCGCTTGGATGTGCGA-GAGCCTCGGGCACCATCGACAA
* **
20951727 AATAGGCCATTGGTTGTGCAA
65 ACTAGGCCATTGGTTGTGCGG
* * * *
20951748 GAGCCTCGGCCACCATCGGGACCTAGGTGCTTGGATGTGCGAGAGCCTCGGACACCATCGACAAA
1 GAGCCTCGGGCACCATCGGTACCTAGGCGCTTGGATGTGCGAGAGCCTCGGGCACCATCGACAAA
* * *
20951813 CGAAGCCTTTGGTTGTGCGG
66 CTAGGCCATTGGTTGTGCGG
* * *
20951833 GAGCCTCGGGCACCATCGGTAACCTAGGCCCTTGG-TCGTGCGAGAGCCTCAGGCACCATCGGC-
1 GAGCCTCGGGCACCATCGGT-ACCTAGGCGCTTGGAT-GTGCGAGAGCCTCGGGCACCATCGACA
* * * * *
20951896 ATCTGGGCGC-TCGGATCTGCGG
64 AACTAGGC-CATTGGTTGTGCGG
* * * * * * * *
20951918 GAGCGTCGGACACCATCGGGAAACTAGGTC-CTTGG-TCGTGTGGGAGCCTCGAGCACCATCG-G
1 GAGCCTCGGGCACCATC-GGTACCTAGG-CGCTTGGAT-GTGCGAGAGCCTCGGGCACCATCGAC
* * * *
20951980 AACCTCAGTGCTA-T-GATGTGTGG
63 AAACT-AG-GCCATTGGTTGTGCGG
* * *** * * * * * * *
20952003 GAGCCTCAGACAATGTCGGCATCCTAGGCCCTTGG-TCGAGCGGGAGCCTTGAGCACCATCAAC-
1 GAGCCTCGGGCACCATCGGTA-CCTAGGCGCTTGGAT-GTGCGAGAGCCTCGGGCACCATCGACA
* * * *
20952066 ACCTTGGTGC-TTGGATT-TGCGA
64 AACTAGG-CCATTGG-TTGTGCGG
* * *** * * * * *
20952088 GAACCTCGGACACCATCAAAAACCTAGGC-CGTTGGTTGTGTGAGAGCCTCAGGTACCATCGGCA
1 GAGCCTCGGGCACCATC-GGTACCTAGGCGC-TTGGATGTGCGAGAGCCTCGGGCACCATCGACA
* * *
20952152 AACTAGGCCTTTGGTCGTGCAG
64 AACTAGGCCATTGGTTGTGCGG
* * * * *
20952174 GAGTCTCGGGCA-CATTCGGCACCTTGGTGCTTGGATGTGCG-GAAGCCTTGGGCACCATCGACA
1 GAGCCTCGGGCACCA-TCGGTACCTAGGCGCTTGGATGTGCGAG-AGCCTCGGGCACCATCGAC-
* * * *
20952237 AAAC-AGG-CACTTCGTCGTGTGA
63 AAACTAGGCCA-TTGGTTGTGCGG
* ** * * * * * *
20952259 GAGCCTCGGCCACCATCGAAACCTAAGTGCTTGGATGTCCGGGAGCCTCGGACACCATCGGCAAA
1 GAGCCTCGGGCACCATCGGTACCTAGGCGCTTGGATGTGCGAGAGCCTCGGGCACCATCGACAAA
* * * * *
20952324 CTAGGCCCTTCGTCGTGTGA
66 CTAGGCCATTGGTTGTGCGG
* * * * *
20952344 GAGCCTCGGGCACCATCGACTACCTAGGCTCTTGG-TCGTGCGAGAGTCTTGGGCACCATCGGC-
1 GAGCCTCGGGCACCATCG-GTACCTAGGCGCTTGGAT-GTGCGAGAGCCTCGGGCACCATCGACA
* * ** * *
20952407 ACCTGGGCGC-TCAGATGTACGG
64 AACTAGGC-CATTGGTTGTGCGG
* * * * * * * * *
20952429 GAGCATCAGACACCATCGGCAAACTAGGCCCTT-GTTCATGCGGGAGCCTCGGGCACCATC-AGC
1 GAGCCTCGGGCACCATCGG-TACCTAGGCGCTTGGAT-GTGCGAGAGCCTCGGGCACCATCGA-C
* * * * **
20952492 -ACCTCGGTGC-TAT-GATGTGCAA
63 AAACTAGG-CCAT-TGGTTGTGCGG
* ** *** *** * * *
20952514 GAGCATCGAACAATGTCACAATCCTCGGCCCTTGG-TCGTGCTGA-AGCCTCGAGCACCATCGAC
1 GAGCCTCGGGCACCATCGGTA-CCTAGGCGCTTGGAT-GTGC-GAGAGCCTCGGGCACCATCGAC
* * * *
20952577 -ACCTTGGTGC-TTGGATGTGCGG
63 AAACTAGG-CCATTGGTTGTGCGG
* * * ** * * * * *
20952599 GAACCTCGGACACAATCAGAAACCTAGGTGATTGGATGTGCG-GAAGCCTCGGGCACTACCGGCA
1 GAGCCTCGGGCACCATC-GGTACCTAGGCGCTTGGATGTGCGAG-AGCCTCGGGCACCATCGACA
* **
20952663 AACTAGGCCCTTGGTCATGCGG
64 AACTAGGCCATTGGTTGTGCGG
* * ** * * * * *
20952685 GAGCCACGGGCACCATCGGCAGAATAGGC-CTTTGG-TCGTACGAGAACCTCGGCCACCATTG-G
1 GAGCCTCGGGCACCATCGGTA-CCTAGGCGC-TTGGAT-GTGCGAGAGCCTCGGGCACCATCGAC
* * * * * *
20952747 GACCTTGGTGC-TTGGATGTACGG
63 AAACTAGG-CCATTGGTTGTGCGG
* * *** * * * * * **
20952770 GAGCCTCAGACACCATCAACAAACTATGCCCTTGGTTGTGC-AGGAGCCTCGGGCACTATCGGTA
1 GAGCCTCGGGCACCATC-GGTACCTAGGCGCTTGGATGTGCGA-GAGCCTCGGGCACCATCGACA
* * * *
20952834 ACCTAGGCCCTTGGTCGTGCGA
64 AACTAGGCCATTGGTTGTGCGG
* * ** * * * * *
20952856 GAGCCTCGGGCACCATCGGCACCTGGGTACTTAGATGTGTGGGAGCGTCGGACACCATCAGA-AA
1 GAGCCTCGGGCACCATCGGTACCTAGGCGCTTGGATGTGCGAGAGCCTCGGGCACCATC-GACAA
* * *
20952920 ACTAGGCCCTTGGTCGTGTGG
65 ACTAGGCCATTGGTTGTGCGG
* * * ** *** *
20952941 GAGCCTCGGGCACCATCGGCACCTCA-GTGCTAT-GATGTGCGGGAGCCTCGAACAATGTCGGCA
1 GAGCCTCGGGCACCATCGGTACCT-AGGCGCT-TGGATGTGCGAGAGCCTCGGGCACCATCGACA
** * * **
20953004 TCCTAGGCCTTTGGTCGTATGG
64 AACTAGGCCATTGGTTGTGCGG
* ** * * * * * * * *
20953026 GAGCCTCGAGCACCATCGACAACTTGGTGCTTGGATGTGAGGGAACCTCGGACACCATCGACAAC
1 GAGCCTCGGGCACCATCGGTACCTAGGCGCTTGGATGTGCGAGAGCCTCGGGCACCATCGACAAA
* *
20953091 CTAGGCCCTTGGTCT-TACGAG
66 CTAGGCCATTGGT-TGTGCG-G
* * * * * *
20953112 G-GCCTTGGGCACCATCGGCAAACTATGCCCTTGG-TCATGCGAGAGCCTCGGGCACCATC-AGC
1 GAGCCTCGGGCACCATCGG-TACCTAGGCGCTTGGAT-GTGCGAGAGCCTCGGGCACCATCGA-C
* * * *
20953174 -ACCTCGG-TACTTGGATGTGCGG
63 AAACTAGGCCA-TTGGTTGTGCGG
* * ** * * **
20953196 GAGCCTCGAGCACCATCGGCAAAATAGGC-CTTTGGTTGTGCGAGAGCCTCGGCCACCATC-AGG
1 GAGCCTCGGGCACCATCGG-TACCTAGGCGC-TTGGATGTGCGAGAGCCTCGGGCACCATCGACA
* * * * *
20953259 ACCTAGGTGC-TCGGATGTGCGA
64 AACTAGG-CCATTGGTTGTGCGG
* * ** * * * *
20953281 GAGGCTCGGACACCATCAGCAAACTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCA
1 GAGCCTCGGGCACCATC-GGTACCTAGGCGCTTGGAT-GTGCGAGAGCCTCGGGCACCATCGACA
* * * *
20953345 ACCGAGGCCCTTGGTCGTGC-G
64 AACTAGGCCATTGGTTGTGCGG
* * ** * * ** * ** * * *
20953366 AAGGCTTCGGGCACCATCGACACCTGGGTGCTCAGATGTGCGGGAGTGTCGGACACTATCGGCAA
1 GA-GCCTCGGGCACCATCGGTACCTAGGCGCTTGGATGTGCGAGAGCCTCGGGCACCATCGACAA
* * *
20953431 ACTAGGCCCTTGGTCGTACGG
65 ACTAGGCCATTGGTTGTGCGG
* * * * * * * *** * *
20953452 GAACCTCAGGCACCATCGGTACCTCGGTGCTAT-GATGTGCGGGAGCCTCAGACAATGTCGGCAT
1 GAGCCTCGGGCACCATCGGTACCTAGGCGCT-TGGATGTGCGAGAGCCTCGGGCACCATCGACAA
* * * *
20953516 CCTAGGCCCTTGGTCGTGTGG
65 ACTAGGCCATTGGTTGTGCGG
* * ** * * * *
20953537 GAGCCTCGAGTACCATCGACACCGT-GGTGCTTGGATGTGC-AGGAACCTCGGACACCATCGGCA
1 GAGCCTCGGGCACCATCGGTACC-TAGGCGCTTGGATGTGCGA-GAGCCTCGGGCACCATCGACA
* * * * *
20953600 ACCTAGGCCCTTAGTCGTGCGA
64 AACTAGGCCATTGGTTGTGCGG
* ** * * *
20953622 GAGCCTCGGACACCATCGGTACCTAGGTACTCGGATGTGCGGGAGCCTCGGACACCATC-AGCAA
1 GAGCCTCGGGCACCATCGGTACCTAGGCGCTTGGATGTGCGAGAGCCTCGGGCACCATCGA-CAA
20953686 ACTA
65 ACTA
20953690 AGGTCGGGGT
Statistics
Matches: 1521, Mismatches: 406, Indels: 200
0.72 0.19 0.09
Matches are distributed among these distances:
83 1 0.00
84 28 0.02
85 1221 0.80
86 268 0.18
87 3 0.00
ACGTcount: A:0.20, C:0.29, G:0.31, T:0.20
Consensus pattern (85 bp):
GAGCCTCGGGCACCATCGGTACCTAGGCGCTTGGATGTGCGAGAGCCTCGGGCACCATCGACAAA
CTAGGCCATTGGTTGTGCGG
Found at i:20951979 original size:128 final size:128
Alignment explanation
Indices: 20951630--20953648 Score: 638
Period size: 128 Copynumber: 15.8 Consensus size: 128
20951620 GAGCCTGGGA
* * * * * * * *
20951630 CACCATCGGCAAACTAGGCCCTTGG-TCGTACGGGAGCCTCGGGCACCATCGG-TACCTCGGTGC
1 CACCATCGGC-ACCTAGGCGCTTGGATC-TGCGGGAGCCTCGGACACCATCGGCAAACTAGGTCC
* * ** * * *
20951693 TTGGAT-GTGCAGGTGCCTCGGGCACCATCGATAAAATAGGCCATTGGTTGTGCAAGAGCCTC-G
64 TTGG-TCGTGCGGGAGCCTCGGGCACCATCGATAACCTAGGCCCTTGGTCGTGCGAGAGCCTCAG
20951756 G
128 G
* * * * * * *
20951757 CCACCATCGGGACCTAGGTGCTTGGATGTGCGAGAGCCTCGGACACCATCGACAAACGAAG-CCT
1 -CACCATCGGCACCTAGGCGCTTGGATCTGCGGGAGCCTCGGACACCATCGGCAAACTAGGTCC-
* *
20951821 TTGGTTGTGCGGGAGCCTCGGGCACCATCGGTAACCTAGGCCCTTGGTCGTGCGAGAGCCTCAGG
64 TTGGTCGTGCGGGAGCCTCGGGCACCATCGATAACCTAGGCCCTTGGTCGTGCGAGAGCCTCAGG
* * * * *
20951886 CACCATCGGCATCTGGGCGCTCGGATCTGCGGGAGCGTCGGACACCATCGGGAAACTAGGTCCTT
1 CACCATCGGCACCTAGGCGCTTGGATCTGCGGGAGCCTCGGACACCATCGGCAAACTAGGTCCTT
* * * * * *
20951951 GGTCGTGTGGGAGCCTCGAGCACCATCG-GAACCTCAGTG--CTATGAT-GTGTGGGAGCCTCAG
66 GGTCGTGCGGGAGCCTCGGGCACCATCGATAACCT-AG-GCCCT-TGGTCGTGCGAGAGCCTCAG
*
20952012 A
128 G
*** * * * ** * * *
20952013 CAATGTCGGCATCCTAGGCCCTTGG-TCGAGCGGGAGCCT-TGAGCACCATCAAC-ACCTTGGTG
1 CACCATCGGCA-CCTAGGCGCTTGGATC-TGCGGGAGCCTCGGA-CACCATCGGCAAACTAGGTC
* * * * * * * * *
20952075 CTTGGAT-TTGCGAGAACCTCGGACACCATCAAAAACCTAGGCCGTTGGTTGTGTGAGAGCCTCA
63 CTTGG-TCGTGCGGGAGCCTCGGGCACCATCGATAACCTAGGCCCTTGGTCGTGCGAGAGCCTCA
20952139 GG
127 GG
* * * * * * *
20952141 TACCATCGGCAAACTAGGC-CTTTGG-TCGTGCAGGAGTCTCGGGCA-CATTCGGC-ACCTTGGT
1 CACCATCGGC-ACCTAGGCGC-TTGGATC-TGCGGGAGCCTCGGACACCA-TCGGCAAACTAGGT
* * * * * * * *
20952202 GCTTGGAT-GTGCGGAAGCCTTGGGCACCATCGACAAAAC-AGGCACTTCGTCGTGTGAGAGCCT
62 CCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGA-TAACCTAGGCCCTTGGTCGTGCGAGAGCCT
20952265 C-GG
125 CAGG
** * * * * *
20952268 CCACCATCGAAACCTAAGTGCTTGGATGTCCGGGAGCCTCGGACACCATCGGCAAACTAGGCCCT
1 -CACCATCGGCACCTAGGCGCTTGGATCTGCGGGAGCCTCGGACACCATCGGCAAACTAGGTCCT
* * * * * **
20952333 TCGTCGTGTGAGAGCCTCGGGCACCATCGACT-ACCTAGGCTCTTGGTCGTGCGAGAGTCTTGGG
65 TGGTCGTGCGGGAGCCTCGGGCACCATCGA-TAACCTAGGCCCTTGGTCGTGCGAGAGCCTCAGG
* ** * * * * *
20952397 CACCATCGGCACCTGGGCGCTCAGATGTACGGGAGCATCAGACACCATCGGCAAACTAGGCCCTT
1 CACCATCGGCACCTAGGCGCTTGGATCTGCGGGAGCCTCGGACACCATCGGCAAACTAGGTCCTT
* * ** * ** * * *
20952462 GTTCATGCGGGAGCCTCGGGCACCATC-AGCACCTCGGTGCTATGAT-GTGCAAGAGCATC--G
66 GGTCGTGCGGGAGCCTCGGGCACCATCGATAACCTAGGCCCT-TGGTCGTGCGAGAGCCTCAGG
* * * * * * * * * *
20952522 AACAAT-GTCACAATCCTCGGCCCTTGG-TCGTGCTGAAGCCTC-GAGCACCATCGAC-ACCTTG
1 CACCATCG--GC-A-CCTAGGCGCTTGGATC-TGCGGGAGCCTCGGA-CACCATCGGCAAACTAG
* * * * ***
20952583 GTGCTTGGAT-GTGCGGGAACCTCGGACACAATCAGA-AACCTAGGTGATTGGAT-GTGCG-GAA
60 GTCCTTGG-TCGTGCGGGAGCCTCGGGCACCATC-GATAACCTAGGCCCTTGG-TCGTGCGAG-A
*
20952644 GCCTCGGG
121 GCCTCAGG
* * * * * *
20952652 CACTACCGGCAAACTAGGCCCTTGG-TCATGCGGGAGCCACGGGCACCATCGGCAGAA-TAGG-C
1 CACCATCGGC-ACCTAGGCGCTTGGATC-TGCGGGAGCCTCGGACACCATCGGCA-AACTAGGTC
* * * * * ** * ** * *
20952714 CTTTGGTCGTACGAGAACCTCGGCCACCATTG-GGACCTTGGTGCTTGGAT-GTACGGGAGCCTC
63 C-TTGGTCGTGCGGGAGCCTCGGGCACCATCGATAACCTAGGCCCTTGG-TCGTGCGAGAGCCTC
*
20952777 AGA
126 AGG
** * * * * * * * * * * *
20952780 CACCATCAACAAACTATGCCCTTGGTTGTGCAGGAGCCTCGGGCACTATCGGTAACCTAGGCCCT
1 CACCATCGGC-ACCTAGGCGCTTGGATCTGCGGGAGCCTCGGACACCATCGGCAAACTAGGTCCT
* ** * ** * * * *
20952845 TGGTCGTGCGAGAGCCTCGGGCACCATCG-GCACCTGGGTACTTAGAT-GTGTGGGAGCGTC-GG
65 TGGTCGTGCGGGAGCCTCGGGCACCATCGATAACCTAGGCCCTT-GGTCGTGCGAGAGCCTCAGG
** * * * * *
20952907 ACACCATCAGAAAACTAGGCCCTTGG-TCGTGTGGGAGCCTCGGGCACCATCGGC-ACCTCA-GT
1 -CACCATC-GGCACCTAGGCGCTTGGATC-TGCGGGAGCCTCGGACACCATCGGCAAACT-AGGT
* * ** *** ** * * ** *
20952969 GCTATGAT-GTGCGGGAGCCTCGAACAATGTCGGCATCCTAGGCCTTTGGTCGTATGGGAGCCTC
62 CCT-TGGTCGTGCGGGAGCCTCGGGCACCATCGATAACCTAGGCCCTTGGTCGTGCGAGAGCCTC
20953033 -GAG
126 AG-G
* * * * * * * * * *
20953036 CACCATCGACAACTTGGTGCTTGGATGTGAGGGAACCTCGGACACCATCGACAACCTAGGCCCTT
1 CACCATCGGCACCTAGGCGCTTGGATCTGCGGGAGCCTCGGACACCATCGGCAAACTAGGTCCTT
* * * ** * * * *
20953101 GGTCTTACGAGG-GCCTTGGGCACCATCGGCAAACTATGCCCTTGGTCATGCGAGAGCCTCGGG
66 GGTCGTGCG-GGAGCCTCGGGCACCATCGATAACCTAGGCCCTTGGTCGTGCGAGAGCCTCAGG
* * ** * *
20953164 CACCATCAGCACCTCGGTACTTGGATGTGCGGGAGCCTC-GAGCACCATCGGCAAAATAGG-CCT
1 CACCATCGGCACCTAGGCGCTTGGATCTGCGGGAGCCTCGGA-CACCATCGGCAAACTAGGTCC-
* * * ** ** * *
20953227 TTGGTTGTGCGAGAGCCTCGGCCACCATC-AGGACCTAGGTGCTCGGAT-GTGCGAGAGGCTC-G
64 TTGGTCGTGCGGGAGCCTCGGGCACCATCGATAACCTAGGCCCTTGG-TCGTGCGAGAGCCTCAG
20953289 G
128 G
* * * * * * *
20953290 ACACCATCAGCAAACTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAACCGAGGCC
1 -CACCATCGGC-ACCTAGGCGCTTGGATC-TGCGGGAGCCTCGGACACCATCGGCAAACTAGGTC
* * * * ** * * * **
20953354 CTTGGTCGTGC-GAAGGCTTCGGGCACCATCGA-CACCTGGGTGCTCAGAT-GTGCGGGAGTGTC
63 CTTGGTCGTGCGGGA-GCCTCGGGCACCATCGATAACCTAGGCCCT-TGGTCGTGCGAGAGCCTC
20953416 -GG
126 AGG
* * * * * * * *
20953418 ACACTATCGGCAAACTAGGCCCTTGG-TCGTACGGGAACCTCAGG-CACCATCGG-TACCTCGGT
1 -CACCATCGGC-ACCTAGGCGCTTGGATC-TGCGGGAGCCTC-GGACACCATCGGCAAACTAGGT
* * * * *** ** * * *
20953480 GCTATGAT-GTGCGGGAGCCTCAGACAATGTCGGCATCCTAGGCCCTTGGTCGTGTGGGAGCCTC
62 CCT-TGGTCGTGCGGGAGCCTCGGGCACCATCGATAACCTAGGCCCTTGGTCGTGCGAGAGCCTC
20953544 -GAG
126 AG-G
* * * * * * * *
20953547 TACCATCGACACCGT-GGTGCTTGGATGTGCAGGAACCTCGGACACCATCGGCAACCTAGGCCCT
1 CACCATCGGCACC-TAGGCGCTTGGATCTGCGGGAGCCTCGGACACCATCGGCAAACTAGGTCCT
* * * *
20953611 TAGTCGTGCGAGAGCCTCGGACACCATCGGT-ACCTAGG
65 TGGTCGTGCGGGAGCCTCGGGCACCATCGATAACCTAGG
20953649 TACTCGGATG
Statistics
Matches: 1422, Mismatches: 375, Indels: 189
0.72 0.19 0.10
Matches are distributed among these distances:
124 1 0.00
125 5 0.00
126 6 0.00
127 350 0.25
128 993 0.70
129 61 0.04
130 5 0.00
131 1 0.00
ACGTcount: A:0.20, C:0.29, G:0.31, T:0.20
Consensus pattern (128 bp):
CACCATCGGCACCTAGGCGCTTGGATCTGCGGGAGCCTCGGACACCATCGGCAAACTAGGTCCTT
GGTCGTGCGGGAGCCTCGGGCACCATCGATAACCTAGGCCCTTGGTCGTGCGAGAGCCTCAGG
Found at i:20952125 original size:298 final size:298
Alignment explanation
Indices: 20951577--20953648 Score: 1452
Period size: 298 Copynumber: 7.0 Consensus size: 298
20951567 GAACTTAACA
*
20951577 AGAGCCTCAGGCACCATCGACACCTAGGCGCTCGGATGT-CGGGGAGCCTGGGACACCATCGGCA
1 AGAGCCTCAGGCACCATCGACACCTAGGCGCTCGGATGTGC-GGGAGCCTCGGACACCATCGGCA
* * * *
20951641 AACTAGGCCCTTGGTCGTACGGGAGCCTCGGGCACCATCGGTACCTCGGTGCTTGGATGTGCAGG
65 AACTAGGCCCTTGGTCGTGCGGGAGCCTCGAGCACCATCGGAACCTCGGTGCTTGGATGTGCGGG
* * * ** * * * ** * *
20951706 TGCCTCGGGCACCATCGATAAAATAGGCCATTGGTTGTGCAAGAGCCTCGGCCACCATCGGGACC
130 AGCCTCGGACAACATCGGCAAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACC
* * * *
20951771 TAGGTGCTTGGATGTGCGAGAGCCTCGGACACCATC-GACAAACGAAGCCTTTGGTTGTGCGGGA
195 TAGGTGCTTGGATGTGCGAGAGCCTCGGACACCATCAGA-AACCTAGGCCTTTGGTCGTGCGGGA
*
20951835 GCCTCGGGCACCATCGGTAACCTAGGCCCTTGGTCGTGCG
259 GCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCG
* * * * * *
20951875 AGAGCCTCAGGCACCATCGGCATCTGGGCGCTCGGATCTGCGGGAGCGTCGGACACCATCGGGAA
1 AGAGCCTCAGGCACCATCGACACCTAGGCGCTCGGATGTGCGGGAGCCTCGGACACCATCGGCAA
* * * *
20951940 ACTAGGTCCTTGGTCGTGTGGGAGCCTCGAGCACCATCGGAACCTCAGTGCTAT-GATGTGTGGG
66 ACTAGGCCCTTGGTCGTGCGGGAGCCTCGAGCACCATCGGAACCTCGGTGCT-TGGATGTGCGGG
* ** ** * * * **
20952004 AGCCTCAGACAATGTCGGCATCCTAGGCCCTTGGTCGAGCGGGAGCCTTGAGCACCATCAACACC
130 AGCCTCGGACAACATCGGCAAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACC
* * * * * * * *
20952069 TTGGTGCTTGGATTTGCGAGAACCTCGGACACCATCAAAAACCTAGGCCGTTGGTTGTGTGAGAG
195 TAGGTGCTTGGATGTGCGAGAGCCTCGGACACCATCAGAAACCTAGGCCTTTGGTCGTGCGGGAG
* * * *
20952134 CCTCAGGTACCATCGGCAAACTAGGCCTTTGGTCGTGC-
260 CCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCG
* * * * * * * * * *
20952172 AGGAGTCTCGGGCA-CATTCGGCACCTTGGTGCTTGGATGTGCGGAAGCCTTGGGCACCATCGAC
1 A-GAGCCTCAGGCACCA-TCGACACCTAGGCGCTCGGATGTGCGGGAGCCTCGGACACCATCGGC
* * * * * ** *
20952236 AAAAC-AGGCACTTCGTCGTGTGAGAGCCTCG-GCCACCATCGAAACCTAAGTGCTTGGATGTCC
64 -AAACTAGGCCCTTGGTCGTGCGGGAGCCTCGAG-CACCATCGGAACCTCGGTGCTTGGATGTGC
* * * * *
20952299 GGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTCGTCGTGTGAGAGCCTCGGGCACCATCGAC
127 GGGAGCCTCGGACAACATCGGCAAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC
* * * ** * ** *
20952364 TACCTAGGCT-CTTGG-TCGTGCGAGAGTCTTGGGCACCATC-GGCACCTGGGCGCTCAGAT-GT
192 -ACCTAGG-TGCTTGGAT-GTGCGAGAGCCTCGGACACCATCAGAAACCTAGGC-CTTTGGTCGT
* * * * * * *
20952425 ACGGGAGCATCAGACACCATCGGCAAACTAGGCCCTTGTTCATGCG
253 GCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCG
* * * * ** ** * * *
20952471 GGAGCCTCGGGCACCATC-AGCACCTCGGTGCTATGATGTGCAAGAGCATC-GA-ACAAT-GTCA
1 AGAGCCTCAGGCACCATCGA-CACCTAGGCGCTCGGATGTGCGGGAGCCTCGGACACCATCGGCA
* * * *
20952532 CAATCCTCGGCCCTTGGTCGTGCTGAAGCCTCGAGCACCATC-GACACCTTGGTGCTTGGATGTG
65 -AA--CTAGGCCCTTGGTCGTGCGGGAGCCTCGAGCACCATCGGA-ACCTCGGTGCTTGGATGTG
* * *** * * *
20952596 CGGGAACCTCGGAC-ACAATCAG-AAACCTAGGTGATTGGAT-GTGCGGAAGCCTCGGGCACTAC
126 CGGGAGCCTCGGACAAC-ATCGGCAAA-CTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCAT
* ** * * * * *
20952658 CGGCAAACTAGGCCCTTGG-TCATGCGGGAGCCACGGGCACCATCGGCAGAA--TAGGCCTTTGG
188 CGGC-ACCTAGGTGCTTGGAT-GTGCGAGAGCCTCGGACACCATCAG-A-AACCTAGGCCTTTGG
* * * * * * * ** *
20952720 TCGTACGAGAACCTCGGCCACCATTGG-GACCTTGGTGCTTGGAT-GTACG
249 TCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TCGTGCG
* * * * * * * * * * * *
20952769 GGAGCCTCAGACACCATCAACAAACTATGCCCTTGGTTGTGCAGGAGCCTCGGGCACTATCGGTA
1 AGAGCCTCAGGCACCATCGAC-ACCTAGGCGCTCGGATGTGCGGGAGCCTCGGACACCATCGGCA
* * * * * * * *
20952834 ACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCACCTGGGTACTTAGATGTGTGGG
65 AACTAGGCCCTTGGTCGTGCGGGAGCCTCGAGCACCATCGGAACCTCGGTGCTTGGATGTGCGGG
* * * * *
20952899 AGCGTCGGACACCATCAGAAAACTAGGCCCTTGGTCGTGTGGGAGCCTCGGGCACCATCGGCACC
130 AGCCTCGGACAACATCGGCAAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACC
* * *** * * * **
20952964 TCA-GTGCTAT-GATGTGCGGGAGCCTCGAACAATGTCGGCATCCTAGGCCTTTGGTCGTATGGG
195 T-AGGTGCT-TGGATGTGCGAGAGCCTCGGACACCATCAGAAACCTAGGCCTTTGGTCGTGCGGG
* * * ** *
20953027 AGCCTCGAGCACCATCGACAA-CTTGGTGCTTGGAT-GTGAG
258 AGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TCGTGCG
* * * * * * * *
20953067 GGAACCTC-GGACACCATCGACAACCTAGGCCCTTGG-TCTTACGAGG-GCCTTGGGCACCATCG
1 AGAGCCTCAGG-CACCATCGAC-ACCTAGGCGCTCGGAT-GTGCG-GGAGCCTCGGACACCATCG
* * * * * * *
20953129 GCAAACTATGCCCTTGGTCATGCGAGAGCCTCGGGCACCATCAGCACCTCGGTACTTGGATGTGC
62 GCAAACTAGGCCCTTGGTCGTGCGGGAGCCTCGAGCACCATCGGAACCTCGGTGCTTGGATGTGC
* * * * * *
20953194 GGGAGCCTC-GAGCACCATCGGCAAAATAGGCCTTTGGTTGTGCGAGAGCCTCGGCCACCATCAG
127 GGGAGCCTCGGA-CAACATCGGCAAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATC-G
* * *
20953258 G-ACCTAGGTGCTCGGATGTGCGAGAGGCTCGGACACCATCAGCAAA-CTAGGCCCTTGGTCGTG
190 GCACCTAGGTGCTTGGATGTGCGAGAGCCTCGGACACCATCAG-AAACCTAGGCCTTTGGTCGTG
*
20953321 CGGGAGCCTCGGGCACCATCGGCAACCGAGGCCCTTGGTCGTGCG
254 CGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCG
* * * * * ** *
20953366 A-AGGCTTCGGGCACCATCGACACCTGGGTGCTCAGATGTGCGGGAGTGTCGGACACTATCGGCA
1 AGA-GCCTCAGGCACCATCGACACCTAGGCGCTCGGATGTGCGGGAGCCTCGGACACCATCGGCA
* * *
20953430 AACTAGGCCCTTGGTCGTACGGGAACCTC-AGGCACCATCGGTACCTCGGTGCTAT-GATGTGCG
65 AACTAGGCCCTTGGTCGTGCGGGAGCCTCGA-GCACCATCGGAACCTCGGTGCT-TGGATGTGCG
* ** ** * * * *
20953493 GGAGCCTCAGACAATGTCGGCATCCTAGGCCCTTGGTCGTGTGGGAGCCTCGAGTACCATCGACA
128 GGAGCCTCGGACAACATCGGCAAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCA
* * * * *
20953558 CCGT-GGTGCTTGGATGTGC-AGGAACCTCGGACACCATCGGCAACCTAGGCCCTTAGTCGTGCG
193 CC-TAGGTGCTTGGATGTGCGA-GAGCCTCGGACACCATCAGAAACCTAGGCCTTTGGTCGTGCG
* * *
20953621 AGAGCCTCGGACACCATCGG-TACCTAGG
256 GGAGCCTCGGGCACCATCGGCAACCTAGG
20953649 TACTCGGATG
Statistics
Matches: 1379, Mismatches: 329, Indels: 133
0.75 0.18 0.07
Matches are distributed among these distances:
294 1 0.00
295 4 0.00
296 5 0.00
297 29 0.02
298 1101 0.80
299 222 0.16
300 9 0.01
301 6 0.00
302 2 0.00
ACGTcount: A:0.20, C:0.29, G:0.31, T:0.20
Consensus pattern (298 bp):
AGAGCCTCAGGCACCATCGACACCTAGGCGCTCGGATGTGCGGGAGCCTCGGACACCATCGGCAA
ACTAGGCCCTTGGTCGTGCGGGAGCCTCGAGCACCATCGGAACCTCGGTGCTTGGATGTGCGGGA
GCCTCGGACAACATCGGCAAACTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCT
AGGTGCTTGGATGTGCGAGAGCCTCGGACACCATCAGAAACCTAGGCCTTTGGTCGTGCGGGAGC
CTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCG
Found at i:20953032 original size:170 final size:168
Alignment explanation
Indices: 20952835--20953680 Score: 602
Period size: 170 Copynumber: 5.0 Consensus size: 168
20952825 CTATCGGTAA
* * * * * *
20952835 CCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCACCTGGGTACTTAGATGTGTGGGA
1 CCTAGGCCCTTGGTCGTGTGGGAGCCTCGAGCACCATCGACACCTGGGTGCTTAGATGTGCGGGA
* * *
20952900 GCGTCGGACACCATCAGAAAACTAGGCCCTTGGTCGTGTGGGAGCCTCGGGCACCATCGGCACCT
66 GCCTCGGACACCATCAGAAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCT
**
20952965 CAGTGCTATGATGTGCGGGAGCCTCGAACAATGTCGGCAT
131 -AGTGCT-TGATGTGCGGGAGCCTCGAACAACATCGGCAT
* * * * * *
20953005 CCTAGGCCTTTGGTCGTATGGGAGCCTCGAGCACCATCGACAACTTGGTGCTTGGATGTGAGGGA
1 CCTAGGCCCTTGGTCGTGTGGGAGCCTCGAGCACCATCGACACCTGGGTGCTTAGATGTGCGGGA
* * * *
20953070 ACCTCGGACACCATC-GACAACCTAGGCCCTTGGTCTTACGAGG-GCCTTGGGCACCATCGGCAA
66 GCCTCGGACACCATCAGA-AACCTAGGCCCTTGGTCGTGCG-GGAGCCTCGGGCACCATCGGC-A
* * * * ** * *
20953133 ACTA-TGCCCTTGGTCATGCGAGAGCCTCGGGCACCATCAGCA-
128 CCTAGTG--CTTGAT-GTGCGGGAGCCTCGAACAACATCGGCAT
* ** * * ** * * * *
20953175 CCTCGGTACTTGGAT-GTGCGGGAGCCTCGAGCACCATCGGCAAAATAGG-CCTTTGGTTGTGCG
1 CCTAGGCCCTTGG-TCGTGTGGGAGCCTCGAGCACCATCGAC-ACCTGGGTGC-TTAGATGTGCG
* * * ** * * * * *
20953238 AGAGCCTCGGCCACCATCAG-GACCTAGGTGCTCGGAT-GTGCGAGAGGCTCGGACACCATCAGC
63 GGAGCCTCGGACACCATCAGAAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGC
* * ** * *
20953301 AAACTAG-GCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAA
127 -ACCTAGTG--CTTGAT-GTGCGGGAGCCTCGAACAACATCGGCAT
* * * * * *
20953346 CCGAGGCCCTTGGTCGTG-CGAAGGCTTCGGGCACCATCGACACCTGGGTGCTCAGATGTGCGGG
1 CCTAGGCCCTTGGTCGTGTGGGA-GCCTCGAGCACCATCGACACCTGGGTGCTTAGATGTGCGGG
** * * * * * *
20953410 AGTGTCGGACACTATCGGCAAA-CTAGGCCCTTGGTCGTACGGGAACCTCAGGCACCATCGGTAC
65 AGCCTCGGACACCATCAG-AAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAC
* **
20953474 CTCGGTGCTATGATGTGCGGGAGCCTC-AGACAATGTCGGCAT
129 CT-AGTGCT-TGATGTGCGGGAGCCTCGA-ACAACATCGGCAT
* * *
20953516 CCTAGGCCCTTGGTCGTGTGGGAGCCTCGAGTACCATCGACACC-GTGGTGCTTGGATGTGCAGG
1 CCTAGGCCCTTGGTCGTGTGGGAGCCTCGAGCACCATCGACACCTG-GGTGCTTAGATGTGCGGG
* * * * * * *
20953580 AACCTCGGACACCATCGGCAACCTAGGCCCTTAGTCGTGCGAGAGCCTCGGACACCATCGGTACC
65 AGCCTCGGACACCATCAGAAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACC
* * * *
20953645 TAGGTACTCGGATGTGCGGGAGCCTCGGACACCATC
130 TA-GTGCT-TGATGTGCGGGAGCCTCGAACAACATC
20953681 AGCAAACTAA
Statistics
Matches: 519, Mismatches: 128, Indels: 58
0.74 0.18 0.08
Matches are distributed among these distances:
169 8 0.02
170 390 0.75
171 118 0.23
172 3 0.01
ACGTcount: A:0.19, C:0.29, G:0.32, T:0.20
Consensus pattern (168 bp):
CCTAGGCCCTTGGTCGTGTGGGAGCCTCGAGCACCATCGACACCTGGGTGCTTAGATGTGCGGGA
GCCTCGGACACCATCAGAAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCT
AGTGCTTGATGTGCGGGAGCCTCGAACAACATCGGCAT
Found at i:20953523 original size:213 final size:209
Alignment explanation
Indices: 20951618--20953554 Score: 1025
Period size: 213 Copynumber: 9.1 Consensus size: 209
20951608 TCGGATGTCG
* * *
20951618 GGGAGCCT-GGGACACCATCGGCAAACTAGGCCCTTGGTCGTACGGGAGCCTCGGGCACCATCGG
1 GGGAGCCTCGGG-CACCATCGGCAAACTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGA
* * * * * * ** * * * * *
20951682 TACCTCGGTGCTTGGATGTGCAGGTGCCTCGGGCACCATCGATAAAATAGGCCATTGGTTGTGCA
65 CACCTCGGTGC-TAGATGTGCGGGAGCCTCGGACACTATCGGCAAACTAGGCCTTTGGTCGTACG
* * *
20951747 AGAGCCTCGGCCACCATCGGGACCTAGGTGCTTGGATGTGCGAGAGCCTCGGACACCATCGACAA
129 GGAGCCTCGG-CACCATC-GGACCTAGGTGCTT-GATGTGCGGGAGCCTCGGACACCATCGGCAA
* * * * *
20951812 ACGAAGCCTTTGGTTGTGC
191 CCTAGGCCCTTGGTCGTGC
* * * *
20951831 GGGAGCCTCGGGCACCATCGGTAACCTAGGCCCTTGGTCGTGCGAGAGCCTCAGGCACCATCGGC
1 GGGAGCCTCGGGCACCATCGGCAAACTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGAC
* * * * * * * * **
20951896 ATCTGGGCGCTCGGATCTGCGGGAGCGTCGGACACCATCGGGAAACTAGGTCC-TTGGTCGTGTG
66 ACCTCGGTGCT-AGATGTGCGGGAGCCTCGGACACTATCGGCAAACTAGG-CCTTTGGTCGTACG
* * ***
20951960 GGAGCCTCGAGCACCATCGGAACCTCA-GTGCTATGATGTGTGGGAGCCTCAGACAATGTCGGCA
129 GGAGCCTCG-GCACCATCGG-ACCT-AGGTGCT-TGATGTGCGGGAGCCTCGGACACCATCGGCA
* *
20952024 TCCTAGGCCCTTGGTCGAGC
190 ACCTAGGCCCTTGGTCGTGC
* * ** * * ** * * * *
20952044 GGGAGCCTTGAGCACCATCAAC-ACCTTGGTGCTTGGAT-TTGCGAGAACCTCGGACACCATCAA
1 GGGAGCCTCGGGCACCATCGGCAAACTAGGCCCTTGG-TCGTGCGAGAGCCTCGGGCACCATC-G
* * * * * * * *
20952107 AAACCTAGGCCGTTGGTTGTGTGAGAGCCTCAGGTAC-C-ATCGGCAAACTAGGCCTTTGGTCGT
64 ACACCTCGG-TGCTAGATGTGCGGGAGCCTC-GG-ACACTATCGGCAAACTAGGCCTTTGGTCGT
* * * * * * *
20952170 GCAGGAGTCTCGGGCA-CATTCGGCACCTTGGTGCTTGGATGTGCGGAAGCCTTGGGCACCATCG
126 ACGGGAGCCTC-GGCACCA-TCGG-ACCTAGGTGCTT-GATGTGCGGGAGCCTCGGACACCATCG
* * * * *
20952234 ACAAAAC-AGGCACTTCGTCGTGT
187 GC-AACCTAGGCCCTTGGTCGTGC
* * * ** * * *
20952257 GAGAGCCTCGGCCACCATC-G-AAACCTAAGTGCTTGGAT-GTCCGGGAGCCTCGGACACCATCG
1 GGGAGCCTCGGGCACCATCGGCAAA-CTAGGCCCTTGG-TCGTGCGAGAGCCTCGGGCACCATCG
* * * ** * * * * * * * *
20952319 GCAAACTAGGCCCTTCG-TCGTGTGAGAGCCTCGGGCACCATCGACTACCTAGG-CTCTTGGTCG
64 AC-ACCTCGGTGC-TAGAT-GTGCGGGAGCCTCGGACACTATCGGCAAACTAGGCCT-TTGGTCG
* * * * * * * * * *
20952382 TGCGAGAGTCTTGGGCACCATCGGCACCTGGGCGCTCAGATGTACGGGAGCATCAGACACCATCG
125 TACGGGAG-CCTCGGCACCATCGG-ACCTAGGTGCT-TGATGTGCGGGAGCCTCGGACACCATCG
* * *
20952447 GCAAACTAGGCCCTTGTTCATGC
187 GCAACCTAGGCCCTTGGTCGTGC
* * * ** * * * ** ***
20952470 GGGAGCCTCGGGCACCATCAGC-ACCTCGGTGCTATGAT-GTGCAAGAGCATCGAACAATGTC-A
1 GGGAGCCTCGGGCACCATCGGCAAACTAGGCCCT-TGGTCGTGCGAGAGCCTCGGGCACCATCGA
** * * * * * * * * *
20952532 CAATCCTCGGCCCTTGGTCGTGCTGAAGCCTC-GAGCACCATCGAC-ACCTTGGTGC-TTGGAT-
65 C-A-CCTCGGTGCTAGAT-GTGCGGGAGCCTCGGA-CACTATCGGCAAACTAGG-CCTTTGG-TC
* * * * * * * * *
20952593 GTGCGGGAACCTCGGACACAATCAGAAACCTAGGTGATTGGATGTGCGGAAGCCTCGGGCACTAC
124 GTACGGGAGCCTCGG-CACCATC-G-GACCTAGGTGCTT-GATGTGCGGGAGCCTCGGACACCAT
* *
20952658 CGGCAAACTAGGCCCTTGGTCATGC
185 CGGCAACCTAGGCCCTTGGTCGTGC
* * * * * * *
20952683 GGGAGCCACGGGCACCATCGGCAGAA-TAGGCCTTTGGTCGTACGAGAACCTCGGCCACCATTGG
1 GGGAGCCTCGGGCACCATCGGCA-AACTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGA
* * * * * * ** * * * * *
20952747 GACCTTGGTGCTTGGATGTACGGGAGCCTCAGACACCATCAACAAACTATGCCCTTGGTTGTGCA
65 CACCTCGGTGC-TAGATGTGCGGGAGCCTCGGACACTATCGGCAAACTAGGCCTTTGGTCGTACG
* ** * * *
20952812 GGAGCCTCGGGCACTATCGGTAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGC-
129 GGAGCCTC-GGCACCATCGG--ACCTAGGTGCTTGAT-GTGCGGGAGCCTCGGACACCATCGGCA
* ** * *
20952876 ACCTGGGTACTTAGAT-GTGT
190 ACCTAGGCCCTT-GGTCGTGC
* * * * * * *
20952896 GGGAGCGTCGGACACCATCAGAAAACTAGGCCCTTGGTCGTGTGGGAGCCTCGGGCACCATCGGC
1 GGGAGCCTCGGGCACCATCGGCAAACTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGAC
* * * * ** *
20952961 ACCTCAGTGCTATGATGTGCGGGAGCCTCGAACAATGTCGGCATCCTAGGCCTTTGGTCGTATGG
66 ACCTCGGTGCTA-GATGTGCGGGAGCCTCGGACACTATCGGCAAACTAGGCCTTTGGTCGTACGG
* * * *
20953026 GAGCCTCGAGCACCATC-GACAACTTGGTGCTTGGATGTGAGGGAACCTCGGACACCATCGACAA
130 GAGCCTCG-GCACCATCGGAC--CTAGGTGCTT-GATGTGCGGGAGCCTCGGACACCATCGGCAA
* *
20953090 CCTAGGCCCTTGGTCTTAC
191 CCTAGGCCCTTGGTCGTGC
* * *
20953109 GAGG-GCCTTGGGCACCATCGGCAAACTATGCCCTTGGTCATGCGAGAGCCTCGGGCACCATC-A
1 G-GGAGCCTCGGGCACCATCGGCAAACTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGA
* * * * * *
20953172 GCACCTCGGTACTTGGATGTGCGGGAGCCTC-GAGCACCATCGGCAAAATAGGCCTTTGGTTGTG
65 -CACCTCGGTGC-TAGATGTGCGGGAGCCTCGGA-CACTATCGGCAAACTAGGCCTTTGGTCGTA
* * * * *
20953236 CGAGAGCCTCGGCCACCATCAGGACCTAGGTGCTCGGATGTGCGAGAGGCTCGGACACCATCAGC
127 CGGGAGCCTCGG-CACCATC-GGACCTAGGTGCT-TGATGTGCGGGAGCCTCGGACACCATCGGC
*
20953301 AAACTAGGCCCTTGGTCGTGC
189 AACCTAGGCCCTTGGTCGTGC
* * *
20953322 GGGAGCCTCGGGCACCATCGGCAACCGAGGCCCTTGGTCGTGCGA-AGGCTTCGGGCACCATCGA
1 GGGAGCCTCGGGCACCATCGGCAAACTAGGCCCTTGGTCGTGCGAGA-GCCTCGGGCACCATCGA
* ** *
20953386 CACCTGGGTGCTCAGATGTGCGGGAGTGTCGGACACTATCGGCAAACTAGGCCCTTGGTCGTACG
65 CACCTCGGTGCT-AGATGTGCGGGAGCCTCGGACACTATCGGCAAACTAGGCCTTTGGTCGTACG
* * * *** *
20953451 GGAACCTCAGGCACCATCGGTACCTCGGTGCTATGATGTGCGGGAGCCTCAGACAATGTCGGCAT
129 GGAGCCTC-GGCACCATCGG-ACCTAGGTGCT-TGATGTGCGGGAGCCTCGGACACCATCGGCAA
*
20953516 CCTAGGCCCTTGGTCGTGT
191 CCTAGGCCCTTGGTCGTGC
* *
20953535 GGGAGCCTCGAGTACCATCG
1 GGGAGCCTCGGGCACCATCG
20953555 ACACCGTGGT
Statistics
Matches: 1311, Mismatches: 333, Indels: 160
0.73 0.18 0.09
Matches are distributed among these distances:
210 2 0.00
211 5 0.00
212 122 0.09
213 1060 0.81
214 114 0.09
215 8 0.01
ACGTcount: A:0.20, C:0.29, G:0.31, T:0.20
Consensus pattern (209 bp):
GGGAGCCTCGGGCACCATCGGCAAACTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGAC
ACCTCGGTGCTAGATGTGCGGGAGCCTCGGACACTATCGGCAAACTAGGCCTTTGGTCGTACGGG
AGCCTCGGCACCATCGGACCTAGGTGCTTGATGTGCGGGAGCCTCGGACACCATCGGCAACCTAG
GCCCTTGGTCGTGC
Found at i:20958920 original size:43 final size:43
Alignment explanation
Indices: 20958836--20958924 Score: 115
Period size: 43 Copynumber: 2.1 Consensus size: 43
20958826 CTCGAGCAGT
* * **
20958836 ATCGGCACCTTGGTGGCTCAGATGTGCGGGAGCCTTAAGCACC
1 ATCGGCACCTTGGAGCCTCAGATGTGCGGGAGCCCCAAGCACC
* * *
20958879 ATCGGCATCTTGGAGCCTCGGATGTGCGGGAGCCCCGAGCACC
1 ATCGGCACCTTGGAGCCTCAGATGTGCGGGAGCCCCAAGCACC
20958922 ATC
1 ATC
20958925 AGAAACTTTG
Statistics
Matches: 39, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
43 39 1.00
ACGTcount: A:0.18, C:0.30, G:0.33, T:0.19
Consensus pattern (43 bp):
ATCGGCACCTTGGAGCCTCAGATGTGCGGGAGCCCCAAGCACC
Found at i:20959463 original size:43 final size:43
Alignment explanation
Indices: 20959395--20959730 Score: 290
Period size: 43 Copynumber: 7.9 Consensus size: 43
20959385 AGCCTCCAGC
* *
20959395 ACCTTGGTGGCTTGGATGTGTGGGAGCCTCGAACACCATCGGA
1 ACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAACACCATCGGA
* * * * * *
20959438 ACCTTGGTGGCTCAGATGAGGGGGAGCCTCGAGCACCATTGGC
1 ACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAACACCATCGGA
* **
20959481 ACCTTGGT-GCTCGGATGTGCTGGAGCCTCGGCCACCATCGGTA
1 ACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAACACCATCGG-A
* ** * * * *
20959524 ACCTTGGTGCCT-GGATGTGCGAAAGGCTCGAGCACGATCGGT
1 ACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAACACCATCGGA
* * * * * *
20959566 ACCTTGGT-TCTTGTATGTGCGAGAGCCTCGAGCACCA-CTGGC
1 ACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAACACCATC-GGA
* **
20959608 ACCTTGGTGGCTCGGATGTGCGGGAGCCTTTG-ACACCATCAACA
1 ACCTTGGTGGCTCGGATGTGCGGGAGCC-TCGAACACCATC-GGA
* * * *
20959652 ACCTTGGT-GCTTGGATGTGCGAGAGCCTCGAGCACCATCGGC
1 ACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAACACCATCGGA
* *
20959694 ACCTTGGT-GCTTGGATGTGCGGGAGCCTCGAGCACCA
1 ACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAACACCA
20959731 AAGCAAAAGT
Statistics
Matches: 237, Mismatches: 48, Indels: 17
0.78 0.16 0.06
Matches are distributed among these distances:
41 3 0.01
42 103 0.43
43 118 0.50
44 13 0.05
ACGTcount: A:0.18, C:0.27, G:0.33, T:0.22
Consensus pattern (43 bp):
ACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAACACCATCGGA
Found at i:20959554 original size:85 final size:85
Alignment explanation
Indices: 20959393--20959730 Score: 364
Period size: 85 Copynumber: 4.0 Consensus size: 85
20959383 AGAGCCTCCA
* * * * * *
20959393 GCACCTTGGTGGCTTGGATGTGTGGGAGCCTCGAACACCATCGGAACCTTGGTGGCTCAGATGAG
1 GCACCTTGGT-GCTTGGATGTGCGAGAGCCTCGAGCACCATCGGAACCTTGGTGCCTCGGATGTG
* *
20959458 GGGGAGCCTCGAGCACCATTG
65 CGGGAGCCTCGAGCACCATCG
*
20959479 GCACCTTGGTGCTCGGATGTGCTG-GAGCCTCG-GCCACCATCGGTAACCTTGGTGCCT-GGATG
1 GCACCTTGGTGCTTGGATGTGC-GAGAGCCTCGAG-CACCATCGG-AACCTTGGTGCCTCGGATG
** * *
20959541 TGCGAAAGGCTCGAGCACGATCG
63 TGCGGGAGCCTCGAGCACCATCG
* * * * *
20959564 GTACCTTGGTTCTTGTATGTGCGAGAGCCTCGAGCACCA-CTGGCACCTTGGTGGCTCGGATGTG
1 GCACCTTGGTGCTTGGATGTGCGAGAGCCTCGAGCACCATC-GGAACCTTGGTGCCTCGGATGTG
* *
20959628 CGGGAGCCTTTGA-CACCATCA
65 CGGGAGCC-TCGAGCACCATCG
* * *
20959649 ACAACCTTGGTGCTTGGATGTGCGAGAGCCTCGAGCACCATCGGCACCTTGGTG-CTTGGATGTG
1 GC-ACCTTGGTGCTTGGATGTGCGAGAGCCTCGAGCACCATCGGAACCTTGGTGCCTCGGATGTG
20959713 CGGGAGCCTCGAGCACCA
65 CGGGAGCCTCGAGCACCA
20959731 AAGCAAAAGT
Statistics
Matches: 211, Mismatches: 30, Indels: 23
0.80 0.11 0.09
Matches are distributed among these distances:
84 16 0.08
85 120 0.57
86 74 0.35
87 1 0.00
ACGTcount: A:0.17, C:0.27, G:0.33, T:0.22
Consensus pattern (85 bp):
GCACCTTGGTGCTTGGATGTGCGAGAGCCTCGAGCACCATCGGAACCTTGGTGCCTCGGATGTGC
GGGAGCCTCGAGCACCATCG
Found at i:20959635 original size:128 final size:127
Alignment explanation
Indices: 20959395--20959730 Score: 402
Period size: 128 Copynumber: 2.6 Consensus size: 127
20959385 AGCCTCCAGC
* * ** * * ** * *
20959395 ACCTTGGTGGCTTGGATGTGTGGGAGCCTCGAACACCATCGGAACCTTGGTGGCTCAGATGAGGG
1 ACCTTGGT-GCCTGGATGTGCGAAAGCCTCGAGCACCATCGGCACCTTGGT-GCTTGGATGTGCG
* * * * ***
20959460 GGAGCCTCGAGCACCATTGGCACCTTGGTGCTCGGATGTGCTGGAGCCTCGGCCACCATCGGTA
64 AGAGCCTCGAGCACCACTGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGGACACCATCAACA
* * * * *
20959524 ACCTTGGTGCCTGGATGTGCGAAAGGCTCGAGCACGATCGGTACCTTGGTTCTTGTATGTGCGAG
1 ACCTTGGTGCCTGGATGTGCGAAAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGATGTGCGAG
**
20959589 AGCCTCGAGCACCACTGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTTTGACACCATCAACA
66 AGCCTCGAGCACCACTGGCACCTTGGT-GCTCGGATGTGCGGGAGCCTCGGACACCATCAACA
* * *
20959652 ACCTTGGTGCTTGGATGTGCGAGAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGATGTGCGGG
1 ACCTTGGTGCCTGGATGTGCGAAAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGATGTGCGAG
20959717 AGCCTCGAGCACCA
66 AGCCTCGAGCACCA
20959731 AAGCAAAAGT
Statistics
Matches: 175, Mismatches: 31, Indels: 3
0.84 0.15 0.01
Matches are distributed among these distances:
127 34 0.19
128 133 0.76
129 8 0.05
ACGTcount: A:0.18, C:0.27, G:0.33, T:0.22
Consensus pattern (127 bp):
ACCTTGGTGCCTGGATGTGCGAAAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGATGTGCGAG
AGCCTCGAGCACCACTGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGGACACCATCAACA
Found at i:20968472 original size:24 final size:24
Alignment explanation
Indices: 20968416--20968473 Score: 71
Period size: 24 Copynumber: 2.4 Consensus size: 24
20968406 TCCCTGTGAT
20968416 CCATCCCGGCGGTGCTCCAGCGAA
1 CCATCCCGGCGGTGCTCCAGCGAA
* * **
20968440 CCGTCCCGGTGGTGCTCTGGCGAA
1 CCATCCCGGCGGTGCTCCAGCGAA
*
20968464 CCATTCCGGC
1 CCATCCCGGC
20968474 AGCATAGGCC
Statistics
Matches: 27, Mismatches: 7, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.12, C:0.40, G:0.31, T:0.17
Consensus pattern (24 bp):
CCATCCCGGCGGTGCTCCAGCGAA
Found at i:20968553 original size:42 final size:42
Alignment explanation
Indices: 20968507--20968641 Score: 110
Period size: 42 Copynumber: 3.2 Consensus size: 42
20968497 GAGCCTTGGG
* *
20968507 CACCATCGGCACCTTGGTGCTAGGATGTGCGGGAGCCTCGCA
1 CACCATCGGCACCTAGGTGCTAGGATGTGAGGGAGCCTCGCA
* ** * * **
20968549 CACCATTGGCAACCTAGGCCCTTGG-TCGTGAGAGAGCCTCGGG
1 CACCATCGGC-ACCTAGGTGCTAGGAT-GTGAGGGAGCCTCGCA
* * * * * *
20968592 CACCATCAGTACCTAGGTGCTCGGAGGAGTGGGAGCCTCGCA
1 CACCATCGGCACCTAGGTGCTAGGATGTGAGGGAGCCTCGCA
20968634 CACCATCG
1 CACCATCG
20968642 CCAAACTAGG
Statistics
Matches: 68, Mismatches: 22, Indels: 6
0.71 0.23 0.06
Matches are distributed among these distances:
42 39 0.57
43 29 0.43
ACGTcount: A:0.19, C:0.31, G:0.32, T:0.18
Consensus pattern (42 bp):
CACCATCGGCACCTAGGTGCTAGGATGTGAGGGAGCCTCGCA
Found at i:20968626 original size:85 final size:84
Alignment explanation
Indices: 20968478--20968683 Score: 261
Period size: 85 Copynumber: 2.4 Consensus size: 84
20968468 TCCGGCAGCA
* * * * *
20968478 TAGGCCCTTGGTCGT-ACGGGAGCCTTGGGCACCATCGGCACCTTGGTGCTAGGATGTGCGGGAG
1 TAGGCCCTTGGTCGTGA--GGAGCCTCGGGCACCATCAGCACCTAGGTGCTAGGAGGAGCGGGAG
* * *
20968542 CCTCGCACACCATTGGCAACC
64 CCTCGCACACCATCGCCAAAC
* * *
20968563 TAGGCCCTTGGTCGTGAGAGAGCCTCGGGCACCATCAGTACCTAGGTGCTCGGAGGAGTGGGAGC
1 TAGGCCCTTGGTCGTGAG-GAGCCTCGGGCACCATCAGCACCTAGGTGCTAGGAGGAGCGGGAGC
20968628 CTCGCACACCATCGCCAAAC
65 CTCGCACACCATCGCCAAAC
*
20968648 TAGGCCTTTGGTCGTGCAGGAGCCTCGGGCACCATC
1 TAGGCCCTTGGTCGTG-AGGAGCCTCGGGCACCATC
20968684 GGCAATCTAG
Statistics
Matches: 106, Mismatches: 12, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
84 1 0.01
85 102 0.96
86 3 0.03
ACGTcount: A:0.18, C:0.31, G:0.33, T:0.19
Consensus pattern (84 bp):
TAGGCCCTTGGTCGTGAGGAGCCTCGGGCACCATCAGCACCTAGGTGCTAGGAGGAGCGGGAGCC
TCGCACACCATCGCCAAAC
Found at i:20968755 original size:85 final size:85
Alignment explanation
Indices: 20968661--20969169 Score: 484
Period size: 85 Copynumber: 6.0 Consensus size: 85
20968651 GCCTTTGGTC
* * *
20968661 GTGCAGGAGCCTCGGGCACCATCGGCAATCTAGGCCCTTGGTCGTGCGAGAGCCTCGTGCACCAT
1 GTGCAGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCAT
* *
20968726 CGGCACCTGGGCACTCGGAT
66 CGGCACCTGGGCGCTCAGAT
* * * * * *
20968746 GTGCTGGAGCCTCAGACACCATCGGCAACCTAGGCCCTTGGTCGTGCAAAAGCCTCGGGCACCGT
1 GTGCAGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCAT
* *
20968811 CGGCACCTAGGCGCT-TGAAT
66 CGGCACCTGGGCGCTCAG-AT
* ** * *** * * * *
20968831 GTGTAGGAGCCTCGGGTACCATCGACAAACTAGGCCCCCCGTCGTACGTGAGCGTCGGGCACGAT
1 GTGCAGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCAT
*
20968896 TGGCACCTGGGCGCTCAGAT
66 CGGCACCTGGGCGCTCAGAT
* * * *
20968916 GTGCAGGAGCGTCGGACACCATCGACAAACTAGGCCCTTGGTCTTGCGAGAGCCTCAGGCACCAT
1 GTGCAGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCAT
* * *
20968981 CGGCACCTCGGTGCT-ATGAC
66 CGGCACCTGGGCGCTCA-GAT
* * *** * ** * * * * *
20969001 CTGCGGGAGCCTCGGACAATGTCGGTATCCAAGGCCCTTGGTCGTGTGGGAGCCTCGAGAACCAT
1 GTGCAGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCAT
* * * *
20969066 CGACACCTTGGAGCTTAGAT
66 CGGCACCTGGGCGCTCAGAT
* * * * *
20969086 GTACAGGAACCTCGGACAACATCGGTAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCAT
1 GTGCAGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCAT
20969151 CGGCACCTAGGG-GCTCAGA
66 CGGCACCT-GGGCGCTCAGA
20969170 CACAATCGGC
Statistics
Matches: 335, Mismatches: 84, Indels: 10
0.78 0.20 0.02
Matches are distributed among these distances:
84 2 0.01
85 329 0.98
86 4 0.01
ACGTcount: A:0.20, C:0.31, G:0.31, T:0.18
Consensus pattern (85 bp):
GTGCAGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCAT
CGGCACCTGGGCGCTCAGAT
Found at i:20968766 original size:128 final size:128
Alignment explanation
Indices: 20968533--20968853 Score: 364
Period size: 128 Copynumber: 2.5 Consensus size: 128
20968523 GTGCTAGGAT
* ** *
20968533 GTGCGGGAGCCTCGCACACCATTGGCAACCTAGGCCCTTGGTCGTGAGAGAGCCTCGGGCACCAT
1 GTGCAGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGAGAGAGCCTCGGGCACCAT
* ** *
20968598 CAGTACCTAGGTGCTCGGAGGAGTGGGAGCCTCGCACACCATCGCCAAACTAGGCCTTTGGTC
66 CAGCACCTAGGCACTCGGAGGAGTGGGAGCCTCGCACACCATCGCCAAACTAGGCCCTTGGTC
* * *
20968661 GTGCAGGAGCCTCGGGCACCATCGGCAATCTAGGCCCTTGGTCGTGCGAGAGCCTCGTGCACCAT
1 GTGCAGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGAGAGAGCCTCGGGCACCAT
* * * * * *
20968726 CGGCACCTGGGCACTCGGATGTGCT-GGAGCCTCAG-ACACCATCGGCAACCTAGGCCCTTGGTC
66 CAGCACCTAGGCACTCGGAGGAG-TGGGAGCCTC-GCACACCATCGCCAAACTAGGCCCTTGGTC
** * * * *
20968789 GTGCAAAAGCCTCGGGCACCGTCGGC-ACCTAGGCGCTTGAAT-GTGTAG-GAGCCTCGGGTACC
1 GTGCAGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTG-GTCGTG-AGAGAGCCTCGGGCACC
20968851 ATC
64 ATC
20968854 GACAAACTAG
Statistics
Matches: 163, Mismatches: 26, Indels: 9
0.82 0.13 0.05
Matches are distributed among these distances:
127 29 0.18
128 132 0.81
129 2 0.01
ACGTcount: A:0.19, C:0.32, G:0.31, T:0.18
Consensus pattern (128 bp):
GTGCAGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGAGAGAGCCTCGGGCACCAT
CAGCACCTAGGCACTCGGAGGAGTGGGAGCCTCGCACACCATCGCCAAACTAGGCCCTTGGTC
Found at i:20968842 original size:42 final size:43
Alignment explanation
Indices: 20968538--20969161 Score: 228
Period size: 43 Copynumber: 14.7 Consensus size: 43
20968528 AGGATGTGCG
** * *
20968538 GGAGCCTCGCACACCATTGGCAACCTAGGCCCTTGGTCGTG-A
1 GGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGATCGTGTA
* * ** * * * *
20968580 GAGAGCCTCGGGCACCATCAG-TACCTAGGTGCTCGGA-GGAGTG
1 G-GAGCCTCGGGCACCATCGGCAACCTAGGCCCT-TGATCGTGTA
** * * * * *
20968623 GGAGCCTCGCACACCATCGCCAAACTAGGCCTTTGGTCGTGCA
1 GGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGATCGTGTA
* * *
20968666 GGAGCCTCGGGCACCATCGGCAATCTAGGCCCTTGGTCGTG-C
1 GGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGATCGTGTA
* * * *
20968708 GAGAGCCTCGTGCACCATCGGC-ACCTGGGCACTCGGAT-GTGCT-
1 G-GAGCCTCGGGCACCATCGGCAACCTAGGCCCT-TGATCGTG-TA
* * * *
20968751 GGAGCCTCAGACACCATCGGCAACCTAGGCCCTTGGTCGTGCA
1 GGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGATCGTGTA
** * *
20968794 AAAGCCTCGGGCACCGTCGGC-ACCTAGGCGCTTGAAT-GTGTA
1 GGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTG-ATCGTGTA
* * * **
20968836 GGAGCCTCGGGTACCATCGACAAACTAGGCCC---CCCGTCGTA
1 GGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGATCGT-GTA
* * * * * * *
20968877 CGTGAGCGTCGGGCACGATTGGC-ACCTGGGCGCTCAGAT-GTGCA
1 -G-GAGCCTCGGGCACCATCGGCAACCTAGGCCCT-TGATCGTGTA
* * * * * * *
20968921 GGAGCGTCGGACACCATCGACAAACTAGGCCCTTGGTCTTG-C
1 GGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGATCGTGTA
* * ** * **
20968963 GAGAGCCTCAGGCACCATCGGC-ACCTCGGTGCTATGA-CCTGCG
1 G-GAGCCTCGGGCACCATCGGCAACCTAGGCCCT-TGATCGTGTA
* *** * * * * *
20969006 GGAGCCTCGGACAATGTCGGTATCCAAGGCCCTTGGTCGTGTG
1 GGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGATCGTGTA
* * * * ** **
20969049 GGAGCCTCGAGAACCATCGAC-ACCTTGGAGCTTAGAT-GTACA
1 GGAGCCTCGGGCACCATCGGCAACCTAGGCCCTT-GATCGTGTA
* * * * * *
20969091 GGAACCTCGGACAACATCGGTAACCTAGGCCCTTGGTCGTG-C
1 GGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGATCGTGTA
20969133 GAGAGCCTCGGGCACCATCGGC-ACCTAGG
1 G-GAGCCTCGGGCACCATCGGCAACCTAGG
20969162 GGCTCAGACA
Statistics
Matches: 404, Mismatches: 145, Indels: 66
0.66 0.24 0.11
Matches are distributed among these distances:
40 2 0.00
41 3 0.01
42 177 0.44
43 218 0.54
44 2 0.00
45 2 0.00
ACGTcount: A:0.20, C:0.31, G:0.31, T:0.18
Consensus pattern (43 bp):
GGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGATCGTGTA
Found at i:20968854 original size:213 final size:213
Alignment explanation
Indices: 20968478--20968866 Score: 530
Period size: 213 Copynumber: 1.8 Consensus size: 213
20968468 TCCGGCAGCA
* * * **
20968478 TAGGCCCTTGGTCGTACGGGAGCCTTGGGCACCATCGGCACCTTGGTGCTAGGATGTGCGGGAGC
1 TAGGCCCTTGGTCGTACGAGAGCCTCGGGCACCATCGGCACCTGGGCACTAGGATGTGCGGGAGC
* * *
20968543 CTCGCACACCATTGGCAACCTAGGCCCTTGGTCGTGAGAGAGCCTCGGGCACCATCAGTACCTAG
66 CTCGCACACCATCGGCAACCTAGGCCCTTGGTCGTGAGAAAGCCTCGGGCACCATCAGCACCTAG
* * * *
20968608 GTGCTCGGAGGAGTGGGAGCCTCGCACACCATCGCCAAACTAGGCCTTTGGTCGTGCAGGAGCCT
131 GCGCTCGAAGGAGTAGGAGCCTCGCACACCATCGACAAACTAGGCCTTTGGTCGTGCAGGAGCCT
20968673 CGGGCACCATCGGCAATC
196 CGGGCACCATCGGCAATC
* * * *
20968691 TAGGCCCTTGGTCGTGCGAGAGCCTCGTGCACCATCGGCACCTGGGCACTCGGATGTGCTGGAGC
1 TAGGCCCTTGGTCGTACGAGAGCCTCGGGCACCATCGGCACCTGGGCACTAGGATGTGCGGGAGC
* *
20968756 CTCAG-ACACCATCGGCAACCTAGGCCCTTGGTCGTGCA-AAAGCCTCGGGCACCGTCGGCACCT
66 CTC-GCACACCATCGGCAACCTAGGCCCTTGGTCGTG-AGAAAGCCTCGGGCACCATCAGCACCT
* * * ***
20968819 AGGCGCTTGAATGTGTAGGAGCCTCGGGTACCATCGACAAACTAGGCC
129 AGGCGCTCGAAGGAGTAGGAGCCTCGCACACCATCGACAAACTAGGCC
20968867 CCCCGTCGTA
Statistics
Matches: 150, Mismatches: 24, Indels: 4
0.84 0.13 0.02
Matches are distributed among these distances:
213 148 0.99
214 2 0.01
ACGTcount: A:0.19, C:0.31, G:0.32, T:0.19
Consensus pattern (213 bp):
TAGGCCCTTGGTCGTACGAGAGCCTCGGGCACCATCGGCACCTGGGCACTAGGATGTGCGGGAGC
CTCGCACACCATCGGCAACCTAGGCCCTTGGTCGTGAGAAAGCCTCGGGCACCATCAGCACCTAG
GCGCTCGAAGGAGTAGGAGCCTCGCACACCATCGACAAACTAGGCCTTTGGTCGTGCAGGAGCCT
CGGGCACCATCGGCAATC
Found at i:20969121 original size:255 final size:255
Alignment explanation
Indices: 20968661--20969169 Score: 547
Period size: 255 Copynumber: 2.0 Consensus size: 255
20968651 GCCTTTGGTC
* * *
20968661 GTGCAGGAGCCTCGGGCACCATCGGCAATCTAGGCCCTTGGTCGTGCGAGAGCCTCGTGCACCAT
1 GTGCAGGAGCCTCGGACACCATCGACAAACTAGGCCCTTGGTCGTGCGAGAGCCTCGTGCACCAT
* * ** * * *
20968726 CGGCACCTGGGCACTCGGATGTGCTGGAGCCTCAGACACCATCGGCAACCTAGGCCCTTGGTCGT
66 CGGCACCTCGGCACTAGGACCTGCGGGAGCCTCAGACAACATCGGCAACCAAGGCCCTTGGTCGT
* * * * * ** * ** *
20968791 GCAAAAGCCTCGGGCACCGTCGGCACCTAGGCGCTTGAATGTGTAGGAGCCTCGGGTACCATCGA
131 GCAAAAGCCTCGAGAACCATCGACACCTAGGAGCTTGAATGTACAGGAACCTCGGACAACATCGA
* * * *
20968856 CAAACTAGGCCCCCCGTCGTACGTGAGCGTCGGGCACGATTGGCACCT-GGGCGCTCAGAT
196 CAAACTAGGCCCCCCGTCGTACGAGAGCCTCGGGCACCATCGGCACCTAGGG-GCTCAGAT
* *
20968916 GTGCAGGAGCGTCGGACACCATCGACAAACTAGGCCCTTGGTCTTGCGAGAGCCTCAG-GCACCA
1 GTGCAGGAGCCTCGGACACCATCGACAAACTAGGCCCTTGGTCGTGCGAGAGCCTC-GTGCACCA
** * * ** * *
20968980 TCGGCACCTCGGTGCTATGACCTGCGGGAGCCTCGGACAATGTCGGTATCCAAGGCCCTTGGTCG
65 TCGGCACCTCGGCACTAGGACCTGCGGGAGCCTCAGACAACATCGGCAACCAAGGCCCTTGGTCG
**** *
20969045 TGTGGGAGCCTCGAGAACCATCGACACCTTGGAGCTT-AGATGTACAGGAACCTCGGACAACATC
130 TGCAAAAGCCTCGAGAACCATCGACACCTAGGAGCTTGA-ATGTACAGGAACCTCGGACAACATC
** * *** *
20969109 GGTAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCACCTAGGGGCTCAGA
194 GACAAACTAGGCCCCCCGTCGTACGAGAGCCTCGGGCACCATCGGCACCTAGGGGCTCAGA
20969170 CACAATCGGC
Statistics
Matches: 204, Mismatches: 47, Indels: 6
0.79 0.18 0.02
Matches are distributed among these distances:
254 1 0.00
255 199 0.98
256 4 0.02
ACGTcount: A:0.20, C:0.31, G:0.31, T:0.18
Consensus pattern (255 bp):
GTGCAGGAGCCTCGGACACCATCGACAAACTAGGCCCTTGGTCGTGCGAGAGCCTCGTGCACCAT
CGGCACCTCGGCACTAGGACCTGCGGGAGCCTCAGACAACATCGGCAACCAAGGCCCTTGGTCGT
GCAAAAGCCTCGAGAACCATCGACACCTAGGAGCTTGAATGTACAGGAACCTCGGACAACATCGA
CAAACTAGGCCCCCCGTCGTACGAGAGCCTCGGGCACCATCGGCACCTAGGGGCTCAGAT
Found at i:20969292 original size:43 final size:42
Alignment explanation
Indices: 20969243--20969402 Score: 171
Period size: 43 Copynumber: 3.7 Consensus size: 42
20969233 ATTTGTTTTA
**
20969243 CGGGAGCCTCGGGCACCATCGGCACCTTGGTGGCTCAGATGTG
1 CGGGAGCCTCAAGCACCATCGGCACCTTGGTGGCTC-GATGTG
* * * *
20969286 CAGGAGCCTCAAGCAGCATAGGCACCTTGGTGGCTCGAAAGTG
1 CGGGAGCCTCAAGCACCATCGGCACCTTGGTGGCTCG-ATGTG
* *
20969329 CGGGAGCCTC-AGACACCATCAGCAACCTTGGT-GCTTGGATGTG
1 CGGGAGCCTCAAG-CACCATCGGC-ACCTTGGTGGC-TCGATGTG
* *
20969372 TGGGAGCCTCGAGCACCATCGGCACCTTGGT
1 CGGGAGCCTCAAGCACCATCGGCACCTTGGT
20969403 TCTTGGGACG
Statistics
Matches: 98, Mismatches: 14, Indels: 11
0.80 0.11 0.09
Matches are distributed among these distances:
42 11 0.11
43 75 0.77
44 12 0.12
ACGTcount: A:0.19, C:0.29, G:0.33, T:0.19
Consensus pattern (42 bp):
CGGGAGCCTCAAGCACCATCGGCACCTTGGTGGCTCGATGTG
Found at i:20969346 original size:86 final size:86
Alignment explanation
Indices: 20969243--20969402 Score: 214
Period size: 86 Copynumber: 1.9 Consensus size: 86
20969233 ATTTGTTTTA
* * * *
20969243 CGGGAGCCTCGGGCACCATCGGC-ACCTTGGTGGCTCAGATGTGCAGGAGCCTCAAGCAGCATAG
1 CGGGAGCCTCAGACACCATCAGCAACCTTGGT-GCTCAGATGTGCAGGAGCCTCAAGCACCATAG
20969307 GCACCTTGGTGGCTCGAAAGTG
65 GCACCTTGGTGGCTCGAAAGTG
** ** * *
20969329 CGGGAGCCTCAGACACCATCAGCAACCTTGGTGCTTGGATGTGTGGGAGCCTCGAGCACCATCGG
1 CGGGAGCCTCAGACACCATCAGCAACCTTGGTGCTCAGATGTGCAGGAGCCTCAAGCACCATAGG
20969394 CACCTTGGT
66 CACCTTGGT
20969403 TCTTGGGACG
Statistics
Matches: 63, Mismatches: 10, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
86 55 0.87
87 8 0.13
ACGTcount: A:0.19, C:0.29, G:0.33, T:0.19
Consensus pattern (86 bp):
CGGGAGCCTCAGACACCATCAGCAACCTTGGTGCTCAGATGTGCAGGAGCCTCAAGCACCATAGG
CACCTTGGTGGCTCGAAAGTG
Found at i:20975132 original size:85 final size:85
Alignment explanation
Indices: 20975007--20975296 Score: 368
Period size: 85 Copynumber: 3.4 Consensus size: 85
20974997 TCCAGCAGCA
* * * * * *
20975007 TAGGCCCTTGGTCGTGCAGGAGTCTCGAGCACCATCGGCACCTTGGTGCTAAGATGTACGGGAGC
1 TAGGCCCTTGGTCGTGCAGGAGCCTCGGGCACCATAGGCACCTAGGCGCTAGGATGTACGGGAGC
* *
20975072 CTCGAACACCATCGGCAACC
66 CTCGGACACCATCGGCAAAC
* * * *
20975092 TAGGCCCTTGGTCGTGC-GAGAGCCTCGGGCACTATTGGCACCTAGGCGCTCGGATGTACTGGAG
1 TAGGCCCTTGGTCGTGCAG-GAGCCTCGGGCACCATAGGCACCTAGGCGCTAGGATGTACGGGAG
*
20975156 CCTCGGACACCATCGGTAAAC
65 CCTCGGACACCATCGGCAAAC
* * * * *
20975177 TAGGCCCATGGTCGTACAGGAGCCTCGGGCACCATAGGCACCTGGGCGCTTGGATGTGCGGGAGC
1 TAGGCCCTTGGTCGTGCAGGAGCCTCGGGCACCATAGGCACCTAGGCGCTAGGATGTACGGGAGC
*
20975242 GTCGGACACCATCGGCAAAC
66 CTCGGACACCATCGGCAAAC
*
20975262 TAGGCCCTTGGTCTTGC-GAGAGCCTCGGGCACCAT
1 TAGGCCCTTGGTCGTGCAG-GAGCCTCGGGCACCAT
20975297 CAGCTACCTG
Statistics
Matches: 177, Mismatches: 25, Indels: 6
0.85 0.12 0.03
Matches are distributed among these distances:
84 2 0.01
85 174 0.98
86 1 0.01
ACGTcount: A:0.19, C:0.30, G:0.32, T:0.19
Consensus pattern (85 bp):
TAGGCCCTTGGTCGTGCAGGAGCCTCGGGCACCATAGGCACCTAGGCGCTAGGATGTACGGGAGC
CTCGGACACCATCGGCAAAC
Found at i:20975199 original size:43 final size:42
Alignment explanation
Indices: 20975007--20975771 Score: 354
Period size: 43 Copynumber: 18.0 Consensus size: 42
20974997 TCCAGCAGCA
* * *
20975007 TAGGCCCTTGGTCGTGCAGGAGTCTC-GAGCACCATCGGCACC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGA-CACCATCGGAACC
* ** * * * *
20975049 TTGGTGCTAAGAT-GTACGGGAGCCTCGAACACCATCGGCAACC
1 TAGGCCCT-TGGTCGTGCGGGAGCCTCGGACACCATCGG-AACC
* * * * *
20975092 TAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACTATTGGCACC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGGAACC
* * * * *
20975134 TAGGCGCTCGGAT-GTACTGGAGCCTCGGACACCATCGGTAAAC
1 TAGGCCCTTGG-TCGTGCGGGAGCCTCGGACACCATCGG-AACC
* * * * * *
20975177 TAGGCCCATGGTCGTACAGGAGCCTCGGGCACCATAGGCACC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGGAACC
* * * *
20975219 TGGGCGCTTGGAT-GTGCGGGAGCGTCGGACACCATCGGCAAAC
1 TAGGCCCTTGG-TCGTGCGGGAGCCTCGGACACCATCGG-AACC
* * * **
20975262 TAGGCCCTTGGTCTTGCGAGAGCCTCGGGCACCATCAGCTACC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCATC-GGAACC
*
20975305 TGGGCCCTTGGTCGTGCGGGAGCCTC-GAGCACCATC-GACACC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGA-CACCATCGGA-ACC
* ** * * ** *
20975347 TTGGTGCTTGGAT-GTGCGGGAACCTCAGACAGTATCAGCAACC
1 TAGGCCCTTGG-TCGTGCGGGAGCCTCGGACACCATC-GGAACC
*** * *
20975390 TAGGCCCTTGGTCGTGCAATAGCCTCGGGCACCATCGGCACC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGGAACC
* * * * * * * *
20975432 TGGGCACTCGGAT-GTACGGGAGCGTTGGACACCATCAGCAAAC
1 TAGGCCCTTGG-TCGTGCGGGAGCCTCGGACACCATC-GGAACC
* * * *
20975475 TAGGTCCTTGGTCGTGCGGGAGCCTCGGGCACCATTGGCACC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGGAACC
* ** * ***
20975517 TCGGTGCTATGAT-GTGCGGGAGCCTCGGACAATGTC-GACATCC
1 TAGGCCCT-TGGTCGTGCGGGAGCCTCGGACACCATCGGA-A-CC
*
20975560 TAGGCCCTTGGTCGTGCGGGAGCCTC-GAGCACCATC-AACACC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGA-CACCATCGGA-ACC
* ** * * *** * *
20975602 TTGGTGCTTGGAT-GTACGGGAGCCTCAGACAATGTTGGCATCC
1 TAGGCCCTTGG-TCGTGCGGGAGCCTCGGACACCATCGG-AACC
** ** *
20975645 TAGGCCCTTGGTCG-GCAAGAGCCTCGGGTACCATCGGCACC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGGAACC
** * * * * *
20975686 TAGGGGCTCGGAT-GTGCGAGAGGCTCGGACACCATCGACAAAC
1 TAGGCCCTTGG-TCGTGCGGGAGCCTCGGACACCATCG-GAACC
* ** * *
20975729 TAAGCCCTTGGTCCCGCGGGAGCCTCGGGCACCATCGGTACC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGGAACC
20975771 T
1 T
20975772 CGGTGCTCAG
Statistics
Matches: 514, Mismatches: 174, Indels: 70
0.68 0.23 0.09
Matches are distributed among these distances:
41 12 0.02
42 243 0.47
43 256 0.50
44 3 0.01
ACGTcount: A:0.19, C:0.30, G:0.32, T:0.19
Consensus pattern (42 bp):
TAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGGAACC
Found at i:20975295 original size:128 final size:127
Alignment explanation
Indices: 20975153--20975427 Score: 334
Period size: 128 Copynumber: 2.1 Consensus size: 127
20975143 GGATGTACTG
* * *
20975153 GAGCCTCGGACACCATCGGTAAACTAGGCCCATGGTCGTACAGGAGCCTCGGGCACCATAGGCAC
1 GAGCCTCGGGCACCATCGGT-AACTAGGCCCATGGTCGTACAGGAGCCTCGAGCACCATAGACAC
* * * * * *
20975218 CTGGGCGCTTGGATGTGCGGGAGCGTCGGACACCATCGGCAAACTAGGCCCTTGGTCTTGCGA
65 CTGGGCGCTTGGATGTGCGGGAACCTCAGACACCATCAGCAAACTAGGCCCTTGGTCGTGCAA
* * * * * * *
20975281 GAGCCTCGGGCACCATCAGCTACCTGGGCCCTTGGTCGTGCGGGAGCCTCGAGCACCATCGACAC
1 GAGCCTCGGGCACCATC-GGTAACTAGGCCCATGGTCGTACAGGAGCCTCGAGCACCATAGACAC
* * ** *
20975346 CTTGGTGCTTGGATGTGCGGGAACCTCAGACAGTATCAGCAACCTAGGCCCTTGGTCGTGCAA
65 CTGGGCGCTTGGATGTGCGGGAACCTCAGACACCATCAGCAAACTAGGCCCTTGGTCGTGCAA
*
20975409 TAGCCTCGGGCACCATCGG
1 GAGCCTCGGGCACCATCGG
20975428 CACCTGGGCA
Statistics
Matches: 123, Mismatches: 23, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
127 1 0.01
128 120 0.98
129 2 0.02
ACGTcount: A:0.19, C:0.31, G:0.32, T:0.18
Consensus pattern (127 bp):
GAGCCTCGGGCACCATCGGTAACTAGGCCCATGGTCGTACAGGAGCCTCGAGCACCATAGACACC
TGGGCGCTTGGATGTGCGGGAACCTCAGACACCATCAGCAAACTAGGCCCTTGGTCGTGCAA
Found at i:20975401 original size:85 final size:85
Alignment explanation
Indices: 20975232--20975969 Score: 565
Period size: 85 Copynumber: 8.7 Consensus size: 85
20975222 GCGCTTGGAT
* * * * ** * * * *
20975232 GTGCGGGAGCGTCGGACACCATCGGCAAACTAGGCCCTTGG-TCTTGCGAGAGCCTCGGGCACCA
1 GTGCGGGAGCCTCGGGCACCATCGGC-ACCTTGGTGCTTGGAT-GTGCGGGAGCCTCGGACAACA
* *
20975296 TCAGCTACCTGGGCCCTTGGTC
64 TCAGCAACCTAGGCCCTTGGTC
* * * * **
20975318 GTGCGGGAGCCTCGAGCACCATCGACACCTTGGTGCTTGGATGTGCGGGAACCTCAGACAGTATC
1 GTGCGGGAGCCTCGGGCACCATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGGACAACATC
20975383 AGCAACCTAGGCCCTTGGTC
66 AGCAACCTAGGCCCTTGGTC
*** * ** * * * * *
20975403 GTGCAATAGCCTCGGGCACCATCGGCACCTGGGCACTCGGATGTACGGGAGCGTTGGACACCATC
1 GTGCGGGAGCCTCGGGCACCATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGGACAACATC
* *
20975468 AGCAAACTAGGTCCTTGGTC
66 AGCAACCTAGGCCCTTGGTC
* * **
20975488 GTGCGGGAGCCTCGGGCACCATTGGCACCTCGGTGCTAT-GATGTGCGGGAGCCTCGGACAATGT
1 GTGCGGGAGCCTCGGGCACCATCGGCACCTTGGTGCT-TGGATGTGCGGGAGCCTCGGACAACAT
*
20975552 C-GACATCCTAGGCCCTTGGTC
65 CAG-CAACCTAGGCCCTTGGTC
* ** * * ** *
20975573 GTGCGGGAGCCTCGAGCACCATCAACACCTTGGTGCTTGGATGTACGGGAGCCTCAGACAATGTT
1 GTGCGGGAGCCTCGGGCACCATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGGACAACATC
* *
20975638 GGCATCCTAGGCCCTTGGTC
66 AGCAACCTAGGCCCTTGGTC
** * * * * * * *
20975658 G-GCAAGAGCCTCGGGTACCATCGGCACCTAGGGGCTCGGATGTGCGAGAGGCTCGGACACCATC
1 GTGCGGGAGCCTCGGGCACCATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGGACAACATC
* *
20975722 -GACAAACTAAGCCCTTGGTC
66 AG-CAACCTAGGCCCTTGGTC
** * * ** * * *
20975742 CCGCGGGAGCCTCGGGCACCATCGGTACCTCGGTGCTCAGATGTGCAGGAACCTCGGGCAACATC
1 GTGCGGGAGCCTCGGGCACCATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGGACAACATC
* * *
20975807 GGCAGA-ATAGGCCCTTCGTC
66 AGCA-ACCTAGGCCCTTGGTC
* * * *
20975827 GTGCGAGAGCCTCAGGCACCATCGGCACCTTGGTGGCTTGGATGTGCGGGAGCCT-TGAGCAGCA
1 GTGCGGGAGCCTCGGGCACCATCGGCACCTTGGT-GCTTGGATGTGCGGGAGCCTCGGA-CAACA
** * ** ** *
20975891 TGGGC-ACCTTGGTGGCTCAGAC
64 TCAGCAACCTAGG-CCCTTGGTC
* * * *
20975913 GTGCGGGAGCCTCGGACACCATTGGCAACCTTAGTGCTTGGATGTGCCGGAGCCTCG
1 GTGCGGGAGCCTCGGGCACCATCGGC-ACCTTGGTGCTTGGATGTGCGGGAGCCTCG
20975970 AGCACCATTG
Statistics
Matches: 512, Mismatches: 125, Indels: 29
0.77 0.19 0.04
Matches are distributed among these distances:
83 1 0.00
84 64 0.12
85 345 0.67
86 95 0.19
87 7 0.01
ACGTcount: A:0.18, C:0.30, G:0.33, T:0.19
Consensus pattern (85 bp):
GTGCGGGAGCCTCGGGCACCATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGGACAACATC
AGCAACCTAGGCCCTTGGTC
Found at i:20975435 original size:213 final size:213
Alignment explanation
Indices: 20975068--20975509 Score: 569
Period size: 213 Copynumber: 2.1 Consensus size: 213
20975058 AGATGTACGG
** * * * * *
20975068 GAGCCTCGAACACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACTATTGGCAC
1 GAGCCTCGGGCACCATCAGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGAGCACCATCGACAC
* * * * * *
20975133 CTAGGCGCTCGGATGTACTGGAGCCTCGGACACCATCGGTAAACTAGGCCCATGGTCGTACAGGA
66 CTAGGCGCTCGGATGTACGGGAACCTCAGACACCATCAGCAAACTAGGCCCATGGTCGTACAAGA
* * * *
20975198 GCCTCGGGCACCATAGGCACCTGGGCGCTTGGATGTGCGGGAGCGTCGGACACCATCGGCAAACT
131 GCCTCGGGCACCATAGGCACCTGGGCACTCGGATGTACGGGAGCGTCGGACACCATCAGCAAACT
*
20975263 AGGCCCTTGGTCTTGCGA
196 AGGCCCTTGGTCGTGCGA
* * *
20975281 GAGCCTCGGGCACCATCAGCTACCTGGGCCCTTGGTCGTGCGGGAGCCTCGAGCACCATCGACAC
1 GAGCCTCGGGCACCATCAGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGAGCACCATCGACAC
* * * * ** * * * *
20975346 CTTGGTGCTTGGATGTGCGGGAACCTCAGACAGTATCAGCAACCTAGGCCCTTGGTCGTGCAATA
66 CTAGGCGCTCGGATGTACGGGAACCTCAGACACCATCAGCAAACTAGGCCCATGGTCGTACAAGA
* *
20975411 GCCTCGGGCACCATCGGCACCTGGGCACTCGGATGTACGGGAGCGTTGGACACCATCAGCAAACT
131 GCCTCGGGCACCATAGGCACCTGGGCACTCGGATGTACGGGAGCGTCGGACACCATCAGCAAACT
* *
20975476 AGGTCCTTGGTCGTGCGG
196 AGGCCCTTGGTCGTGCGA
20975494 GAGCCTCGGGCACCAT
1 GAGCCTCGGGCACCAT
20975510 TGGCACCTCG
Statistics
Matches: 194, Mismatches: 35, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
213 194 1.00
ACGTcount: A:0.19, C:0.31, G:0.32, T:0.18
Consensus pattern (213 bp):
GAGCCTCGGGCACCATCAGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGAGCACCATCGACAC
CTAGGCGCTCGGATGTACGGGAACCTCAGACACCATCAGCAAACTAGGCCCATGGTCGTACAAGA
GCCTCGGGCACCATAGGCACCTGGGCACTCGGATGTACGGGAGCGTCGGACACCATCAGCAAACT
AGGCCCTTGGTCGTGCGA
Found at i:20975485 original size:128 final size:128
Alignment explanation
Indices: 20975186--20975679 Score: 317
Period size: 128 Copynumber: 3.9 Consensus size: 128
20975176 CTAGGCCCAT
* * * * * * * *
20975186 GGTCGTACAGGAGCCTCGGGCACCATAGGCACCT-GGGCGCTTGGATGTGCGGGAGCGTCGGACA
1 GGTCGTACGGGAGCCTCGAGCACCATCGACAACTAGGTC-CTTGGATGTGCGGGAGCCTCAGACA
* * * * *
20975250 CCATCGGCAAACTAGGCCCTTGGTCTTGCGAGAGCCTCGGGCACCATCAGCTACCTGGGCCCTT
65 CCATCAGCAAACTAGGCCCTTGGTCGTGCAAGAGCCTCGGGCACCATCAGCTACCTGGGCACTC
* * * * * *
20975314 GGTCGTGCGGGAGCCTCGAGCACCATCGACACCTTGGTGCTTGGATGTGCGGGAACCTCAGACAG
1 GGTCGTACGGGAGCCTCGAGCACCATCGACAACTAGGTCCTTGGATGTGCGGGAGCCTCAGACAC
* * * *
20975379 TATCAGCAACCTAGGCCCTTGGTCGTGCAATAGCCTCGGGCACCATCGGC-ACCTGGGCACTC
66 CATCAGCAAACTAGGCCCTTGGTCGTGCAAGAGCCTCGGGCACCATCAGCTACCTGGGCACTC
* * *
20975441 GGAT-GTACGGGAGCGTTG-GACACCATC-AGCAAACTAGGTCCTTGG-TCGTGCGGGAGCCTCG
1 GG-TCGTACGGGAGCCTCGAG-CACCATCGA-C-AACTAGGTCCTTGGAT-GTGCGGGAGCCTCA
* ** * * ** * ** * *** *
20975502 GGCACCATTGGC-ACCTCGGTGCTATGAT-GTGCGGGAGCCTCGGACAATGTC-GAC-ATCCTAG
61 GACACCATCAGCAAACTAGGCCCT-TGGTCGTGCAAGAGCCTCGGGCACCATCAG-CTA-CCTGG
* *
20975563 GCCCTT
123 GCACTC
* * * * * * *
20975569 GGTCGTGCGGGAGCCTCGAGCACCATCAACACCTTGGTGCTTGGATGTACGGGAGCCTCAGACAA
1 GGTCGTACGGGAGCCTCGAGCACCATCGACAACTAGGTCCTTGGATGTGCGGGAGCCTCAGACAC
** ** ** *
20975634 TGTTGGCATCCTAGGCCCTTGGTCG-GCAAGAGCCTCGGGTACCATC
66 CATCAGCAAACTAGGCCCTTGGTCGTGCAAGAGCCTCGGGCACCATC
20975680 GGCACCTAGG
Statistics
Matches: 280, Mismatches: 71, Indels: 31
0.73 0.19 0.08
Matches are distributed among these distances:
126 3 0.01
127 107 0.38
128 166 0.59
129 4 0.01
ACGTcount: A:0.18, C:0.30, G:0.32, T:0.20
Consensus pattern (128 bp):
GGTCGTACGGGAGCCTCGAGCACCATCGACAACTAGGTCCTTGGATGTGCGGGAGCCTCAGACAC
CATCAGCAAACTAGGCCCTTGGTCGTGCAAGAGCCTCGGGCACCATCAGCTACCTGGGCACTC
Found at i:20975547 original size:298 final size:298
Alignment explanation
Indices: 20975009--20975596 Score: 802
Period size: 298 Copynumber: 2.0 Consensus size: 298
20974999 CAGCAGCATA
* * *
20975009 GGCCCTTGGTCGTGCAGGAGTCTCGAGCACCATCGGCACCTTGGTGCTAAGATGTACGGGAGCCT
1 GGCCCTTGGTCGTGCAGGAGCCTCGAGCACCATCGACACCTTGGTGCTAAGATGTACGGGAACCT
* * * *
20975074 CGAACACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACTATTGGCACCTAGGC
66 CGAACACCATCAGCAACCTAGGCCCTTGGTCGTGCAAGAGCCTCGGGCACCATCGGCACCTAGGC
* * * *
20975139 GCTCGGATGTACTGGAGCCTCGGACACCATCGGTAAACTAGGCCCATGGTCGTACAGGAGCCTCG
131 ACTCGGATGTACGGGAGCCTCGGACACCATCAGCAAACTAGGCCCATGGTCGTACAGGAGCCTCG
* * * *
20975204 GGCACCATAGGCACCTGGGCGCTTGGATGTGCGGGAGCGTCGGACACCATCGGCAAACTAGGCCC
196 GGCACCATAGGCACCTCGGCGCTTGGATGTGCGGGAGCCTCGGACAACATCGACAAACTAGGCCC
* *
20975269 TTGGTCTTGCGAGAGCCTCGGGCACCATCAGCTACCTG
261 TTGGTCGTGCGAGAGCCTCGAGCACCATCAGCTACCTG
* ** *
20975307 GGCCCTTGGTCGTGCGGGAGCCTCGAGCACCATCGACACCTTGGTGCTTGGATGTGCGGGAACCT
1 GGCCCTTGGTCGTGCAGGAGCCTCGAGCACCATCGACACCTTGGTGCTAAGATGTACGGGAACCT
** * *
20975372 C-AGACAGTATCAGCAACCTAGGCCCTTGGTCGTGCAATAGCCTCGGGCACCATCGGCACCTGGG
66 CGA-ACACCATCAGCAACCTAGGCCCTTGGTCGTGCAAGAGCCTCGGGCACCATCGGCACCTAGG
* * * * * *
20975436 CACTCGGATGTACGGGAGCGTTGGACACCATCAGCAAACTAGGTCCTTGGTCGTGCGGGAGCCTC
130 CACTCGGATGTACGGGAGCCTCGGACACCATCAGCAAACTAGGCCCATGGTCGTACAGGAGCCTC
* * ** **
20975501 GGGCACCATTGGCACCTCGGTGCTAT-GATGTGCGGGAGCCTCGGACAATGTCGACATCCTAGGC
195 GGGCACCATAGGCACCTCGGCGCT-TGGATGTGCGGGAGCCTCGGACAACATCGACAAACTAGGC
*
20975565 CCTTGGTCGTGCGGGAGCCTCGAGCACCATCA
259 CCTTGGTCGTGCGAGAGCCTCGAGCACCATCA
20975597 ACACCTTGGT
Statistics
Matches: 250, Mismatches: 38, Indels: 4
0.86 0.13 0.01
Matches are distributed among these distances:
297 1 0.00
298 248 0.99
299 1 0.00
ACGTcount: A:0.19, C:0.30, G:0.32, T:0.19
Consensus pattern (298 bp):
GGCCCTTGGTCGTGCAGGAGCCTCGAGCACCATCGACACCTTGGTGCTAAGATGTACGGGAACCT
CGAACACCATCAGCAACCTAGGCCCTTGGTCGTGCAAGAGCCTCGGGCACCATCGGCACCTAGGC
ACTCGGATGTACGGGAGCCTCGGACACCATCAGCAAACTAGGCCCATGGTCGTACAGGAGCCTCG
GGCACCATAGGCACCTCGGCGCTTGGATGTGCGGGAGCCTCGGACAACATCGACAAACTAGGCCC
TTGGTCGTGCGAGAGCCTCGAGCACCATCAGCTACCTG
Found at i:20975579 original size:213 final size:213
Alignment explanation
Indices: 20975068--20975585 Score: 542
Period size: 213 Copynumber: 2.4 Consensus size: 213
20975058 AGATGTACGG
** * * * * * * * * *
20975068 GAGCCTCGAACACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACTATTGGCAC
1 GAGCCTCGGGCACCATCAGCTACCTCGGCCCTTGATCGTGCGGGAGCCTCGAGCACAATCGACAC
* * * * * * ** * * * *
20975133 CTAGGCGCTCGGATGTACTGGAGCCTCGGACACCATCGGTAAACTAGGCCCATGGTCGTACAGGA
66 CTAGGCCCTTGGATGTGCGGGAACCTCAGACAGTATCAGCAACCTAGGCCCATGGTCGTACAAGA
* * * *
20975198 GCCTCGGGCACCATAGGCACCTGGGCGCTTGGATGTGCGGGAGCGTCGGACACCATCGGCAAACT
131 GCCTCGGGCACCATAGGCACCTGGGCACTCGGATGTACGGGAGCGTCGGACACCATCAGCAAACT
*
20975263 AGGCCCTTGGTCTTGCGA
196 AGGCCCTTGGTCGTGCGA
* * *
20975281 GAGCCTCGGGCACCATCAGCTACCTGGGCCCTTGGTCGTGCGGGAGCCTCGAGCACCATCGACAC
1 GAGCCTCGGGCACCATCAGCTACCTCGGCCCTTGATCGTGCGGGAGCCTCGAGCACAATCGACAC
* ** * * *
20975346 CTTGGTGCTTGGATGTGCGGGAACCTCAGACAGTATCAGCAACCTAGGCCCTTGGTCGTGCAATA
66 CTAGGCCCTTGGATGTGCGGGAACCTCAGACAGTATCAGCAACCTAGGCCCATGGTCGTACAAGA
* *
20975411 GCCTCGGGCACCATCGGCACCTGGGCACTCGGATGTACGGGAGCGTTGGACACCATCAGCAAACT
131 GCCTCGGGCACCATAGGCACCTGGGCACTCGGATGTACGGGAGCGTCGGACACCATCAGCAAACT
* *
20975476 AGGTCCTTGGTCGTGCGG
196 AGGCCCTTGGTCGTGCGA
** **
20975494 GAGCCTCGGGCACCATTGGC-ACCTCGGTGCTATGAT-GTGCGGGAGCCTCG-G-ACAATGTCGA
1 GAGCCTCGGGCACCATCAGCTACCTCGGCCCT-TGATCGTGCGGGAGCCTCGAGCACAA--TCGA
*
20975555 CATCCTAGGCCCTTGG-TCGTGCGGGAGCCTC
63 CA-CCTAGGCCCTTGGAT-GTGCGGGAACCTC
20975586 GAGCACCATC
Statistics
Matches: 254, Mismatches: 46, Indels: 10
0.82 0.15 0.03
Matches are distributed among these distances:
210 3 0.01
211 1 0.00
212 29 0.11
213 221 0.87
ACGTcount: A:0.19, C:0.31, G:0.32, T:0.19
Consensus pattern (213 bp):
GAGCCTCGGGCACCATCAGCTACCTCGGCCCTTGATCGTGCGGGAGCCTCGAGCACAATCGACAC
CTAGGCCCTTGGATGTGCGGGAACCTCAGACAGTATCAGCAACCTAGGCCCATGGTCGTACAAGA
GCCTCGGGCACCATAGGCACCTGGGCACTCGGATGTACGGGAGCGTCGGACACCATCAGCAAACT
AGGCCCTTGGTCGTGCGA
Found at i:20975787 original size:254 final size:255
Alignment explanation
Indices: 20975307--20975881 Score: 766
Period size: 254 Copynumber: 2.3 Consensus size: 255
20975297 CAGCTACCTG
*
20975307 GGCCCTTGGTCGTGCGGGAGCCTCGAGCACCATCGACACCTTGGTGCTTGGATGTGCGGGAACCT
1 GGCCCTTGGTCGTGCGGGAGCCTCGAGCACCATCGACACCTTGGTGCTTGGATGTGCGGGAGCCT
* *
20975372 CAGACAGTATCAGCAACCTAGGCCCTTGGTCGTGCAATAGCCTCGGGCACCATCGGCACCTGGGC
66 CAGACAATATCAGCAACCTAGGCCCTTGGTCGTGCAAGAGCCTCGGGCACCATCGGCACCTGGGC
* * * * **
20975437 ACTCGGATGTACGGGAGCGTTGGACACCATCAGCAAACTAGGTCCTTGGTCGTGCGGGAGCCTCG
131 ACTCGGATGTACGAGAGCGTCGGACACCATCAGCAAACTAAGCCCTTGGTCCCGCGGGAGCCTCG
* * * ** ***
20975502 GGCACCATTGGCACCTCGGTGCTATGATGTGCGGGAGCCTCGGACAATGTCGACATCCTA
196 GGCACCATCGGCACCTCGGTGCTATGATGTGCAGGAACCTCGGACAACATCGACAGAATA
* *
20975562 GGCCCTTGGTCGTGCGGGAGCCTCGAGCACCATCAACACCTTGGTGCTTGGATGTACGGGAGCCT
1 GGCCCTTGGTCGTGCGGGAGCCTCGAGCACCATCGACACCTTGGTGCTTGGATGTGCGGGAGCCT
* ** * *
20975627 CAGACAATGTTGGCATCCTAGGCCCTTGGTCG-GCAAGAGCCTCGGGTACCATCGGCACCTAGGG
66 CAGACAATATCAGCAACCTAGGCCCTTGGTCGTGCAAGAGCCTCGGGCACCATCGGCACCT-GGG
* *
20975691 -GCTCGGATGTGCGAGAG-GCTCGGACACCATC-GACAAACTAAGCCCTTGGTCCCGCGGGAGCC
130 CACTCGGATGTACGAGAGCG-TCGGACACCATCAG-CAAACTAAGCCCTTGGTCCCGCGGGAGCC
* * *
20975753 TCGGGCACCATCGGTACCTCGGTGCTCA-GATGTGCAGGAACCTCGGGCAACATCGGCAGAATA
193 TCGGGCACCATCGGCACCTCGGTGCT-ATGATGTGCAGGAACCTCGGACAACATCGACAGAATA
* * *
20975816 GGCCCTTCGTCGTGCGAGAGCCTC-AGGCACCATCGGCACCTTGGTGGCTTGGATGTGCGGGAGC
1 GGCCCTTGGTCGTGCGGGAGCCTCGA-GCACCATCGACACCTTGGT-GCTTGGATGTGCGGGAGC
20975880 CT
64 CT
20975882 TGAGCAGCAT
Statistics
Matches: 280, Mismatches: 34, Indels: 12
0.86 0.10 0.04
Matches are distributed among these distances:
253 3 0.01
254 165 0.59
255 112 0.40
ACGTcount: A:0.19, C:0.30, G:0.32, T:0.19
Consensus pattern (255 bp):
GGCCCTTGGTCGTGCGGGAGCCTCGAGCACCATCGACACCTTGGTGCTTGGATGTGCGGGAGCCT
CAGACAATATCAGCAACCTAGGCCCTTGGTCGTGCAAGAGCCTCGGGCACCATCGGCACCTGGGC
ACTCGGATGTACGAGAGCGTCGGACACCATCAGCAAACTAAGCCCTTGGTCCCGCGGGAGCCTCG
GGCACCATCGGCACCTCGGTGCTATGATGTGCAGGAACCTCGGACAACATCGACAGAATA
Found at i:20975874 original size:43 final size:43
Alignment explanation
Indices: 20975827--20976005 Score: 202
Period size: 43 Copynumber: 4.2 Consensus size: 43
20975817 GCCCTTCGTC
* *
20975827 GTGCGAGAGCCTC-AGGCACCATCGGCACCTTGGTGGCTTGGAT
1 GTGCGGGAGCCTCGA-GCACCATTGGCACCTTGGTGGCTTGGAT
* * * ** *
20975870 GTGCGGGAGCCTTGAGCAGCATGGGCACCTTGGTGGCTCAGAC
1 GTGCGGGAGCCTCGAGCACCATTGGCACCTTGGTGGCTTGGAT
*
20975913 GTGCGGGAGCCTCG-GACACCATTGGCAACCTTAGT-GCTTGGAT
1 GTGCGGGAGCCTCGAG-CACCATTGGC-ACCTTGGTGGCTTGGAT
* * *
20975956 GTGCCGGAGCCTCGAGCACCATTGGCACCTTGGTGCCTGGGAT
1 GTGCGGGAGCCTCGAGCACCATTGGCACCTTGGTGGCTTGGAT
20975999 GTGCGGG
1 GTGCGGG
20976006 CTAAAGAAAA
Statistics
Matches: 112, Mismatches: 19, Indels: 10
0.79 0.13 0.07
Matches are distributed among these distances:
42 8 0.07
43 95 0.85
44 9 0.08
ACGTcount: A:0.16, C:0.27, G:0.37, T:0.21
Consensus pattern (43 bp):
GTGCGGGAGCCTCGAGCACCATTGGCACCTTGGTGGCTTGGAT
Found at i:20975923 original size:86 final size:86
Alignment explanation
Indices: 20975826--20975990 Score: 235
Period size: 86 Copynumber: 1.9 Consensus size: 86
20975816 GGCCCTTCGT
* * * *
20975826 CGTGCGAGAGCCTCAGG-CACCATCGGC-ACCTTGGTGGCTTGGATGTGCGGGAGCCTTGAGCAG
1 CGTGCGAGAGCCTC-GGACACCATCGGCAACCTTAGT-GCTTGGATGTGCCGGAGCCTCGAGCAC
20975889 CATGGGCACCTTGGTGGCTCAGA
64 CATGGGCACCTTGGTGGCTCAGA
* *
20975912 CGTGCGGGAGCCTCGGACACCATTGGCAACCTTAGTGCTTGGATGTGCCGGAGCCTCGAGCACCA
1 CGTGCGAGAGCCTCGGACACCATCGGCAACCTTAGTGCTTGGATGTGCCGGAGCCTCGAGCACCA
*
20975977 TTGGCACCTTGGTG
66 TGGGCACCTTGGTG
20975991 CCTGGGATGT
Statistics
Matches: 70, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
85 2 0.03
86 61 0.87
87 7 0.10
ACGTcount: A:0.16, C:0.28, G:0.35, T:0.21
Consensus pattern (86 bp):
CGTGCGAGAGCCTCGGACACCATCGGCAACCTTAGTGCTTGGATGTGCCGGAGCCTCGAGCACCA
TGGGCACCTTGGTGGCTCAGA
Found at i:20982814 original size:43 final size:43
Alignment explanation
Indices: 20982748--20982882 Score: 189
Period size: 43 Copynumber: 3.1 Consensus size: 43
20982738 CTCCGCACTG
* **
20982748 TCGGCACCTTGGTGGCTCGGATGTGTGGGATCCTCGAGCAGTA
1 TCGGCACCTTGGTGGCTCGGATGTGTGGGAGCCTCGAGCACCA
*
20982791 TCGGCACCTTGGTGGCTCAGATGTGTGGGAGCCTCGAGCACCA
1 TCGGCACCTTGGTGGCTCGGATGTGTGGGAGCCTCGAGCACCA
* * ** *
20982834 TCGGTACCTTGGTGGGTCGGATGTGCAGGAGCCCCGAGCACCA
1 TCGGCACCTTGGTGGCTCGGATGTGTGGGAGCCTCGAGCACCA
20982877 TCGGCA
1 TCGGCA
20982883 ACTTTGGCCC
Statistics
Matches: 81, Mismatches: 11, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
43 81 1.00
ACGTcount: A:0.16, C:0.27, G:0.36, T:0.21
Consensus pattern (43 bp):
TCGGCACCTTGGTGGCTCGGATGTGTGGGAGCCTCGAGCACCA
Done.