Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr08 ID=Chr08-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 57128820
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 677448 characters in sequence are not A, C, G, or T
File 88 of 190
Found at i:25853506 original size:21 final size:21
Alignment explanation
Indices: 25853439--25853507 Score: 54
Period size: 21 Copynumber: 3.2 Consensus size: 21
25853429 ATGGGTTTTG
25853439 CTGACCCTAACGATGTTTAGT
1 CTGACCCTAACGATGTTTAGT
* * *
25853460 -TCGACCATAGCCATGGGTCTT-G-
1 CT-GACCCTAACGAT--GT-TTAGT
25853482 CTGACCCTAACGATGTTTAGT
1 CTGACCCTAACGATGTTTAGT
25853503 CTGAC
1 CTGAC
25853508 TCATACCATA
Statistics
Matches: 35, Mismatches: 6, Indels: 14
0.64 0.11 0.25
Matches are distributed among these distances:
19 2 0.06
20 4 0.11
21 14 0.40
22 9 0.26
23 4 0.11
24 2 0.06
ACGTcount: A:0.22, C:0.26, G:0.22, T:0.30
Consensus pattern (21 bp):
CTGACCCTAACGATGTTTAGT
Found at i:25855287 original size:18 final size:18
Alignment explanation
Indices: 25855264--25855301 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
25855254 ATCCTATAAA
*
25855264 TAGTTTGAATTTTATCTT
1 TAGTTTAAATTTTATCTT
*
25855282 TAGTTTAAATTTTATTTT
1 TAGTTTAAATTTTATCTT
25855300 TA
1 TA
25855302 AAATTTGATT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.26, C:0.03, G:0.08, T:0.63
Consensus pattern (18 bp):
TAGTTTAAATTTTATCTT
Found at i:25863281 original size:40 final size:39
Alignment explanation
Indices: 25863230--25863341 Score: 143
Period size: 40 Copynumber: 2.8 Consensus size: 39
25863220 ATACAGAAAT
25863230 GTACCCCTGTTTGCACATTAGTGCCCCTATTTATACTTTG
1 GTACCCCTGTTTGCACATTAGTGCCCCTATTTA-ACTTTG
* * * *
25863270 GTACCCTTGTTTTCACATCAGTGCCCCTGATTGAACTTTG
1 GTACCCCTGTTTGCACATTAGTGCCCCT-ATTTAACTTTG
** *
25863310 GTACCCCTGAATGCACATTTGTGCCCCTATTT
1 GTACCCCTGTTTGCACATTAGTGCCCCTATTT
25863342 GCATTTCGGT
Statistics
Matches: 60, Mismatches: 11, Indels: 3
0.81 0.15 0.04
Matches are distributed among these distances:
39 3 0.05
40 53 0.88
41 4 0.07
ACGTcount: A:0.18, C:0.29, G:0.16, T:0.38
Consensus pattern (39 bp):
GTACCCCTGTTTGCACATTAGTGCCCCTATTTAACTTTG
Found at i:25863357 original size:40 final size:40
Alignment explanation
Indices: 25863292--25863398 Score: 121
Period size: 40 Copynumber: 2.7 Consensus size: 40
25863282 TCACATCAGT
* * *
25863292 GCCCCTGATTGAACTTTGGTACCCCTGAAT-GCACATTTGT
1 GCCCCTGATTGCACTTTGGTGCCCCTG-ATCGCACATTTGC
*
25863332 GCCCCT-ATTTGCA-TTTCGGTGCCCCTGATCGCTCATTTGC
1 GCCCCTGA-TTGCACTTT-GGTGCCCCTGATCGCACATTTGC
*
25863372 GCTCCTGATTGCACTTTGGTGCCCCTG
1 GCCCCTGATTGCACTTTGGTGCCCCTG
25863399 TTATGTATTT
Statistics
Matches: 57, Mismatches: 5, Indels: 10
0.79 0.07 0.14
Matches are distributed among these distances:
39 6 0.11
40 47 0.82
41 4 0.07
ACGTcount: A:0.13, C:0.32, G:0.21, T:0.34
Consensus pattern (40 bp):
GCCCCTGATTGCACTTTGGTGCCCCTGATCGCACATTTGC
Found at i:25863398 original size:20 final size:20
Alignment explanation
Indices: 25863290--25863398 Score: 91
Period size: 20 Copynumber: 5.5 Consensus size: 20
25863280 TTTCACATCA
*
25863290 GTGCCCCTGATTGAACTTTG
1 GTGCCCCTGATTGCACTTTG
* *
25863310 GTACCCCTGAATGCACATTT-
1 GTGCCCCTGATTGCAC-TTTG
25863330 GTGCCCCT-ATTTGCA-TTTCG
1 GTGCCCCTGA-TTGCACTTT-G
* *
25863350 GTGCCCCTGATCGCTCATTT-
1 GTGCCCCTGATTGCAC-TTTG
* *
25863370 GCGCTCCTGATTGCACTTTG
1 GTGCCCCTGATTGCACTTTG
25863390 GTGCCCCTG
1 GTGCCCCTG
25863399 TTATGTATTT
Statistics
Matches: 68, Mismatches: 13, Indels: 16
0.70 0.13 0.16
Matches are distributed among these distances:
18 3 0.04
19 4 0.06
20 54 0.79
21 4 0.06
22 3 0.04
ACGTcount: A:0.13, C:0.31, G:0.22, T:0.34
Consensus pattern (20 bp):
GTGCCCCTGATTGCACTTTG
Found at i:25866555 original size:40 final size:40
Alignment explanation
Indices: 25866496--25866687 Score: 240
Period size: 40 Copynumber: 4.8 Consensus size: 40
25866486 CACACTAGTT
* * *
25866496 TGTGGACAAGCCACTAGTATTGTAGATAAACTACCAGAAA
1 TGTGGACAAGCCACCAGTATTGCAGATAAACTACCAGTAA
* * *
25866536 TGTGGACAAGCCACCAGTATTGCAGATAAACTATCGGTAT
1 TGTGGACAAGCCACCAGTATTGCAGATAAACTACCAGTAA
* * *
25866576 TATGGATAAGCCACCAGTATTGCAGATAAACTACCAGTAT
1 TGTGGACAAGCCACCAGTATTGCAGATAAACTACCAGTAA
* * *
25866616 TGTGGACAAGCCACCAGTATTGCAGACAAGCTGCCAGTAA
1 TGTGGACAAGCCACCAGTATTGCAGATAAACTACCAGTAA
* * * *
25866656 TGTGAACAAGCCATCAGTGTTGCAGACAAACT
1 TGTGGACAAGCCACCAGTATTGCAGATAAACT
25866688 GTCAGTACCT
Statistics
Matches: 132, Mismatches: 20, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
40 132 1.00
ACGTcount: A:0.35, C:0.21, G:0.21, T:0.22
Consensus pattern (40 bp):
TGTGGACAAGCCACCAGTATTGCAGATAAACTACCAGTAA
Found at i:25866595 original size:20 final size:20
Alignment explanation
Indices: 25866495--25866637 Score: 106
Period size: 20 Copynumber: 7.2 Consensus size: 20
25866485 ACACACTAGT
* *
25866495 TTGTGGACAAGCCACTAGTA
1 TTGTGGATAAGCCACCAGTA
* * * *
25866515 TTGTAGATAAACTACCAGAA
1 TTGTGGATAAGCCACCAGTA
* *
25866535 ATGTGGACAAGCCACCAGTA
1 TTGTGGATAAGCCACCAGTA
** * * * *
25866555 TTGCAGATAAACTATCGGTA
1 TTGTGGATAAGCCACCAGTA
*
25866575 TTATGGATAAGCCACCAGTA
1 TTGTGGATAAGCCACCAGTA
** * *
25866595 TTGCAGATAAACTACCAGTA
1 TTGTGGATAAGCCACCAGTA
*
25866615 TTGTGGACAAGCCACCAGTA
1 TTGTGGATAAGCCACCAGTA
25866635 TTG
1 TTG
25866638 CAGACAAGCT
Statistics
Matches: 86, Mismatches: 37, Indels: 0
0.70 0.30 0.00
Matches are distributed among these distances:
20 86 1.00
ACGTcount: A:0.35, C:0.20, G:0.21, T:0.24
Consensus pattern (20 bp):
TTGTGGATAAGCCACCAGTA
Found at i:25866643 original size:20 final size:20
Alignment explanation
Indices: 25866540--25866684 Score: 96
Period size: 20 Copynumber: 7.2 Consensus size: 20
25866530 CAGAAATGTG
25866540 GACAAGCCACCAGTATTGCA
1 GACAAGCCACCAGTATTGCA
* * * * * ***
25866560 GATAAACTATCGGTATTATG
1 GACAAGCCACCAGTATTGCA
*
25866580 GATAAGCCACCAGTATTGCA
1 GACAAGCCACCAGTATTGCA
* * * **
25866600 GATAAACTACCAGTATTGTG
1 GACAAGCCACCAGTATTGCA
25866620 GACAAGCCACCAGTATTGCA
1 GACAAGCCACCAGTATTGCA
**
25866640 GACAAGCTGCCAGTAATGTG-A
1 GACAAGCCACCAGT-AT-TGCA
* *
25866661 -ACAAGCCATCAGTGTTGCA
1 GACAAGCCACCAGTATTGCA
25866680 GACAA
1 GACAA
25866685 ACTGTCAGTA
Statistics
Matches: 91, Mismatches: 30, Indels: 8
0.71 0.23 0.06
Matches are distributed among these distances:
18 2 0.02
19 2 0.02
20 82 0.90
21 3 0.03
22 2 0.02
ACGTcount: A:0.35, C:0.22, G:0.21, T:0.21
Consensus pattern (20 bp):
GACAAGCCACCAGTATTGCA
Found at i:25873611 original size:38 final size:38
Alignment explanation
Indices: 25873560--25873636 Score: 154
Period size: 38 Copynumber: 2.0 Consensus size: 38
25873550 AGCAAGTTAG
25873560 TGGTGGCATGATTTCGTTGAAATTAGTATATAAGTGTA
1 TGGTGGCATGATTTCGTTGAAATTAGTATATAAGTGTA
25873598 TGGTGGCATGATTTCGTTGAAATTAGTATATAAGTGTA
1 TGGTGGCATGATTTCGTTGAAATTAGTATATAAGTGTA
25873636 T
1 T
25873637 ATTAGGATCC
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 39 1.00
ACGTcount: A:0.29, C:0.05, G:0.26, T:0.40
Consensus pattern (38 bp):
TGGTGGCATGATTTCGTTGAAATTAGTATATAAGTGTA
Found at i:25873989 original size:34 final size:35
Alignment explanation
Indices: 25873944--25874027 Score: 118
Period size: 34 Copynumber: 2.5 Consensus size: 35
25873934 GACGGCAGCA
* * *
25873944 ATTAGAGTTTTAATTTTATTTATTTTCTTTATTAT
1 ATTAGAGTTTTAATTTTACTTATTTTCTCTATCAT
25873979 A-TAGAGTTTTAATTTTACTTATTTTCTCTATCAT
1 ATTAGAGTTTTAATTTTACTTATTTTCTCTATCAT
*
25874013 ATTAG-GTTTTTATTT
1 ATTAGAGTTTTAATTT
25874028 CCTTTATAAA
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
34 40 0.91
35 4 0.09
ACGTcount: A:0.25, C:0.06, G:0.07, T:0.62
Consensus pattern (35 bp):
ATTAGAGTTTTAATTTTACTTATTTTCTCTATCAT
Found at i:25875456 original size:44 final size:45
Alignment explanation
Indices: 25875368--25875457 Score: 137
Period size: 44 Copynumber: 2.0 Consensus size: 45
25875358 GCAGCAATTC
* *
25875368 GAGTTTTAGTTTTATTTATTTTCTTTATTATATCAGGTTTTTATTT
1 GAGTTTTAGTTTTACTTA-TTTCTCTATTATATCAGGTTTTTATTT
*
25875414 GAGTTTTAGTTTTACTTA-TTCTCTATTATATTAGGTTTTTATTT
1 GAGTTTTAGTTTTACTTATTTCTCTATTATATCAGGTTTTTATTT
25875458 CCTTTATAAA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
44 24 0.59
46 17 0.41
ACGTcount: A:0.20, C:0.06, G:0.11, T:0.63
Consensus pattern (45 bp):
GAGTTTTAGTTTTACTTATTTCTCTATTATATCAGGTTTTTATTT
Found at i:25877867 original size:26 final size:26
Alignment explanation
Indices: 25877838--25877914 Score: 76
Period size: 26 Copynumber: 3.2 Consensus size: 26
25877828 TCTCAATTAA
25877838 ATTTTAATTTTAATTCAATTATATAT
1 ATTTTAATTTTAATTCAATTATATAT
* * *
25877864 A-TTTAA---AAAAT-AAATATAT-T
1 ATTTTAATTTTAATTCAATTATATAT
25877884 AATTTTAATTTTAATTCAATTATATAT
1 -ATTTTAATTTTAATTCAATTATATAT
25877911 ATTT
1 ATTT
25877915 AAAAAATATA
Statistics
Matches: 38, Mismatches: 6, Indels: 14
0.66 0.10 0.24
Matches are distributed among these distances:
20 1 0.03
21 8 0.21
22 8 0.21
25 8 0.21
26 12 0.32
27 1 0.03
ACGTcount: A:0.44, C:0.03, G:0.00, T:0.53
Consensus pattern (26 bp):
ATTTTAATTTTAATTCAATTATATAT
Found at i:25883854 original size:24 final size:24
Alignment explanation
Indices: 25883827--25883888 Score: 72
Period size: 24 Copynumber: 2.6 Consensus size: 24
25883817 TAGCTCGAAA
* *
25883827 GAGCGTCCCGTTATTAGCTCTCAT-
1 GAGCATCCCGTTATTAGCCCTC-TC
*
25883851 GAGCATCCTGTTATTAGCCCTCTC
1 GAGCATCCCGTTATTAGCCCTCTC
*
25883875 GAGCTTCCCGTTAT
1 GAGCATCCCGTTAT
25883889 ATGAATCTTA
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
23 1 0.03
24 31 0.97
ACGTcount: A:0.16, C:0.31, G:0.19, T:0.34
Consensus pattern (24 bp):
GAGCATCCCGTTATTAGCCCTCTC
Found at i:25884014 original size:26 final size:26
Alignment explanation
Indices: 25883979--25884053 Score: 89
Period size: 26 Copynumber: 2.9 Consensus size: 26
25883969 ACAGCTTTTA
* *
25883979 TGAGCGTCCCGA-TATATGGCTCTTTG
1 TGAGCTTCCCGATTA-AAGGCTCTTTG
25884005 TGAGCTTCCCGATTAAAGGCTCTTTG
1 TGAGCTTCCCGATTAAAGGCTCTTTG
** *
25884031 TGAGCTTCTTGATTAATGGCTCT
1 TGAGCTTCCCGATTAAAGGCTCT
25884054 CCGGAACTTT
Statistics
Matches: 43, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
26 41 0.95
27 2 0.05
ACGTcount: A:0.17, C:0.21, G:0.24, T:0.37
Consensus pattern (26 bp):
TGAGCTTCCCGATTAAAGGCTCTTTG
Found at i:25884074 original size:23 final size:23
Alignment explanation
Indices: 25884046--25884093 Score: 60
Period size: 23 Copynumber: 2.1 Consensus size: 23
25884036 TTCTTGATTA
*
25884046 ATGGCTCTCCGGAACTTTCCGAT
1 ATGGCTCTCCGGAACTTCCCGAT
* **
25884069 ATGGCTTTCTTGAACTTCCCGAT
1 ATGGCTCTCCGGAACTTCCCGAT
25884092 AT
1 AT
25884094 ATGGTTATCT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.19, C:0.27, G:0.19, T:0.35
Consensus pattern (23 bp):
ATGGCTCTCCGGAACTTCCCGAT
Found at i:25884245 original size:25 final size:25
Alignment explanation
Indices: 25884130--25884289 Score: 105
Period size: 25 Copynumber: 6.4 Consensus size: 25
25884120 TGGATCTTCG
* **
25884130 GAGCTACCCGTTAT-TGGCTCGCAT
1 GAGCTTCCCGTTATATGGCTCATAT
*
25884154 GAGCTT-CC-TAATTATGGCT-ATTAT
1 GAGCTTCCCGTTA-TATGGCTCA-TAT
* * * *
25884178 TAGCTTCCCGTTATATAGCCCGTAT
1 GAGCTTCCCGTTATATGGCTCATAT
* *
25884203 AAGCTTCCCGTTACATGGCTCATAT
1 GAGCTTCCCGTTATATGGCTCATAT
* * *
25884228 GAGCTTCCCATTATATGGCTCGAGAGA
1 GAGCTTCCCGTTATATGGCTC-ATA-T
*
25884255 GAGCTTCCCGTT-TATGTGCTCACAT
1 GAGCTTCCCGTTATATG-GCTCATAT
25884280 GAGCATTCCC
1 GAGC-TTCCC
25884290 AAATATGAAT
Statistics
Matches: 104, Mismatches: 22, Indels: 18
0.72 0.15 0.12
Matches are distributed among these distances:
22 2 0.02
23 3 0.03
24 17 0.16
25 52 0.50
26 15 0.14
27 15 0.14
ACGTcount: A:0.21, C:0.26, G:0.20, T:0.33
Consensus pattern (25 bp):
GAGCTTCCCGTTATATGGCTCATAT
Found at i:25886909 original size:41 final size:41
Alignment explanation
Indices: 25886787--25886922 Score: 149
Period size: 41 Copynumber: 3.4 Consensus size: 41
25886777 ACCAGTTTGG
* *
25886787 CACCCAGTGCCTCATC-AGATAAT-TCGAAGTAATAAATTGA
1 CACCCAGTGCCTCATCGAGTTAATCT-GAAGTAGTAAATTGA
* * * * *
25886827 CACACAGTGTCTCATCG-GTTAAACCG-A--AGTAAATTGG
1 CACCCAGTGCCTCATCGAGTTAATCTGAAGTAGTAAATTGA
25886864 CACCCAGTGCCTCATCGAGTTAATCTGAAGTAGTAAATTGA
1 CACCCAGTGCCTCATCGAGTTAATCTGAAGTAGTAAATTGA
*
25886905 CACCCAGTGTCTCATCGA
1 CACCCAGTGCCTCATCGA
25886923 CTCGAAATCG
Statistics
Matches: 77, Mismatches: 13, Indels: 11
0.76 0.13 0.11
Matches are distributed among these distances:
37 23 0.30
38 7 0.09
39 2 0.03
40 19 0.25
41 26 0.34
ACGTcount: A:0.32, C:0.24, G:0.18, T:0.25
Consensus pattern (41 bp):
CACCCAGTGCCTCATCGAGTTAATCTGAAGTAGTAAATTGA
Found at i:25887902 original size:5 final size:5
Alignment explanation
Indices: 25887894--25887975 Score: 164
Period size: 5 Copynumber: 16.4 Consensus size: 5
25887884 TATTTTGTTT
25887894 TAATA TAATA TAATA TAATA TAATA TAATA TAATA TAATA TAATA TAATA
1 TAATA TAATA TAATA TAATA TAATA TAATA TAATA TAATA TAATA TAATA
25887944 TAATA TAATA TAATA TAATA TAATA TAATA TA
1 TAATA TAATA TAATA TAATA TAATA TAATA TA
25887976 CTTAATACTT
Statistics
Matches: 77, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 77 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (5 bp):
TAATA
Found at i:25894744 original size:18 final size:20
Alignment explanation
Indices: 25894702--25894745 Score: 65
Period size: 19 Copynumber: 2.2 Consensus size: 20
25894692 TTTTATTTCT
25894702 TTATCTTTATATATGTATATA
1 TTAT-TTTATATATGTATATA
25894723 TTATTTTA-ATATGTAT-TA
1 TTATTTTATATATGTATATA
25894741 TTATT
1 TTATT
25894746 CTAAAATTAT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 7 0.30
19 8 0.35
20 4 0.17
21 4 0.17
ACGTcount: A:0.32, C:0.02, G:0.05, T:0.61
Consensus pattern (20 bp):
TTATTTTATATATGTATATA
Found at i:25900066 original size:45 final size:44
Alignment explanation
Indices: 25900017--25900545 Score: 217
Period size: 44 Copynumber: 11.8 Consensus size: 44
25900007 AACAAGTCTC
*
25900017 ATCTCTCTGAAGTTGCAGTGGAGCAGACTGAAGATAACAAACATT
1 ATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATAACAAAC-TT
* * **
25900062 ATCTCCTTGAAGTTGCAGTGGAGCAGACTGAAGATAGCGAGTCTT
1 ATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATAAC-AAACTT
* * * ** * *
25900107 ATTTCCCTAAAGTTGCAGCGGAAAAAATTGAAGCTATAA-ATTACCGATCTT
1 ATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAG--ATAACA--A---A-CTT
* * * *
25900158 ATCTCTCTGAAGTTGCAGTAGAGCAGA-T---CATATCAAACCTT
1 ATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATAACAAA-CTT
* * * ** *
25900199 ATCTCTCTGAAGTTGCAGTAGAGTAGGTTAAAG-TAACAAACCTT
1 ATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATAACAAA-CTT
* ** *
25900243 ATC-CCCTAAAGTTGCAGTAGG-GCAGGTTGAAGAT-ACAAGTCTT
1 ATCTCCCTGAAGTTGCAGT-GGAGCAGACTGAAGATAACAA-ACTT
* * *
25900286 ATCTCCCTGAAGTTGCAGTGAAGCAGACTGAA-ACT-ACTAATCCT
1 ATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGA-TAAC-AAACTT
* * * * * *
25900330 ATCTCCCTAAAGTTGCAGTAGAGCGGATTAAAACGAT-A-AATCTT
1 ATCTCCCTGAAGTTGCAGTGGAGCAGACT-GAA-GATAACAAACTT
** ** * ** **
25900374 ATAC-CTTTGAAGTTGCAAAGGGTCGGATTAGATCTTACCATTTCAAACTTT
1 AT-CTCCCTGAAGTTGC--A--GT-GGAGCAGA-CTGAAGATAACAAAC-TT
* ** *
25900425 ATCTCCCTGAAGTCGCAGTGGAGCAGGTTGAAGAT-ACAAGTCTT
1 ATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATAACAA-ACTT
* * * * *
25900469 ATCTCCATGAAATTGTAGTGGAGCAGACTGAAG-TTACAAGTCTT
1 ATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATAACAA-ACTT
25900513 ATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAG
1 ATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAG
25900546 TTTATTTATT
Statistics
Matches: 364, Mismatches: 83, Indels: 75
0.70 0.16 0.14
Matches are distributed among these distances:
41 29 0.08
42 1 0.00
43 35 0.10
44 155 0.43
45 76 0.21
46 11 0.03
47 6 0.02
48 4 0.01
49 6 0.02
50 6 0.02
51 35 0.10
ACGTcount: A:0.32, C:0.19, G:0.22, T:0.28
Consensus pattern (44 bp):
ATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATAACAAACTT
Found at i:25900583 original size:33 final size:33
Alignment explanation
Indices: 25900546--25900608 Score: 117
Period size: 33 Copynumber: 1.9 Consensus size: 33
25900536 CAGACTGAAG
*
25900546 TTTATTTATTATCTTGCATACTTGATTCGTCTT
1 TTTATTTATTATCTTGCATAATTGATTCGTCTT
25900579 TTTATTTATTATCTTGCATAATTGATTCGT
1 TTTATTTATTATCTTGCATAATTGATTCGT
25900609 TTTAATTCAA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 29 1.00
ACGTcount: A:0.21, C:0.13, G:0.10, T:0.57
Consensus pattern (33 bp):
TTTATTTATTATCTTGCATAATTGATTCGTCTT
Found at i:25900718 original size:44 final size:44
Alignment explanation
Indices: 25900579--25900694 Score: 214
Period size: 44 Copynumber: 2.6 Consensus size: 44
25900569 GATTCGTCTT
25900579 TTTATTTATTATCTTGCATAATTGATTCGTTTTAATTCAACTCG
1 TTTATTTATTATCTTGCATAATTGATTCGTTTTAATTCAACTCG
*
25900623 TTTATTTATTATCTTGCATAATTGATTCGTTTTAATTCGACTCG
1 TTTATTTATTATCTTGCATAATTGATTCGTTTTAATTCAACTCG
*
25900667 TTTATTTATTATTTTGCATAATTGATTC
1 TTTATTTATTATCTTGCATAATTGATTC
25900695 ATCTTTTTAT
Statistics
Matches: 70, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
44 70 1.00
ACGTcount: A:0.24, C:0.12, G:0.09, T:0.54
Consensus pattern (44 bp):
TTTATTTATTATCTTGCATAATTGATTCGTTTTAATTCAACTCG
Found at i:25901432 original size:26 final size:26
Alignment explanation
Indices: 25901394--25901454 Score: 106
Period size: 26 Copynumber: 2.4 Consensus size: 26
25901384 CGCTATTAAT
*
25901394 AGGT-AGCCACTCATAGGGGCTACAA
1 AGGTAAGCCCCTCATAGGGGCTACAA
25901419 AGGTAAGCCCCTCATAGGGGCTACAA
1 AGGTAAGCCCCTCATAGGGGCTACAA
25901445 AGGTAAGCCC
1 AGGTAAGCCC
25901455 TTATGAAATA
Statistics
Matches: 34, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
25 4 0.12
26 30 0.88
ACGTcount: A:0.31, C:0.26, G:0.28, T:0.15
Consensus pattern (26 bp):
AGGTAAGCCCCTCATAGGGGCTACAA
Found at i:25910252 original size:22 final size:22
Alignment explanation
Indices: 25910227--25910273 Score: 58
Period size: 22 Copynumber: 2.1 Consensus size: 22
25910217 GTTATAACAA
* *
25910227 AAATTTTCTAAATTTATATTAT
1 AAATATTCAAAATTTATATTAT
* *
25910249 AAATATTGAAAATTTATGTTAT
1 AAATATTCAAAATTTATATTAT
25910271 AAA
1 AAA
25910274 AATAATTTAT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.47, C:0.02, G:0.04, T:0.47
Consensus pattern (22 bp):
AAATATTCAAAATTTATATTAT
Found at i:25917498 original size:17 final size:17
Alignment explanation
Indices: 25917478--25917510 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
25917468 ATAGGGTTAG
25917478 TATGCGCGCTTGTACGA
1 TATGCGCGCTTGTACGA
*
25917495 TATGCGTGCTTGTACG
1 TATGCGCGCTTGTACG
25917511 GGATTTGCAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.15, C:0.21, G:0.30, T:0.33
Consensus pattern (17 bp):
TATGCGCGCTTGTACGA
Found at i:25918741 original size:18 final size:18
Alignment explanation
Indices: 25918714--25918748 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
25918704 AACAATATAA
* *
25918714 CAATTTGGTATTATTTTT
1 CAATTAGGTATCATTTTT
25918732 CAATTAGGTATCATTTT
1 CAATTAGGTATCATTTT
25918749 GGTATTGATA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.26, C:0.09, G:0.11, T:0.54
Consensus pattern (18 bp):
CAATTAGGTATCATTTTT
Found at i:25920580 original size:17 final size:17
Alignment explanation
Indices: 25920558--25920606 Score: 53
Period size: 19 Copynumber: 2.8 Consensus size: 17
25920548 AATCGCCACC
25920558 AATATTCTTTGGTTTCT
1 AATATTCTTTGGTTTCT
* *
25920575 AATATTTCATTTGTTTTTT
1 AATA-TTC-TTTGGTTTCT
*
25920594 TATATTCTTTGGT
1 AATATTCTTTGGT
25920607 ATGTAATTGT
Statistics
Matches: 26, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
17 9 0.35
18 6 0.23
19 11 0.42
ACGTcount: A:0.18, C:0.08, G:0.10, T:0.63
Consensus pattern (17 bp):
AATATTCTTTGGTTTCT
Found at i:25921587 original size:32 final size:33
Alignment explanation
Indices: 25921517--25921602 Score: 104
Period size: 32 Copynumber: 2.6 Consensus size: 33
25921507 CGCGCGGTTC
* *
25921517 TGTGAAATGATAACAAATATCACCTTTTCATTT
1 TGTGAAATGATAACAAATATCAACTTTTAATTT
*
25921550 TGTGAAATTATAACAAAT-TACAAC-TTTAATTT
1 TGTGAAATGATAACAAATAT-CAACTTTTAATTT
* *
25921582 TGTGAAGTGATAATAAATATC
1 TGTGAAATGATAACAAATATC
25921603 GACTAGCATC
Statistics
Matches: 45, Mismatches: 6, Indels: 5
0.80 0.11 0.09
Matches are distributed among these distances:
32 24 0.53
33 21 0.47
ACGTcount: A:0.41, C:0.10, G:0.10, T:0.38
Consensus pattern (33 bp):
TGTGAAATGATAACAAATATCAACTTTTAATTT
Found at i:25923927 original size:13 final size:13
Alignment explanation
Indices: 25923892--25923931 Score: 53
Period size: 13 Copynumber: 3.1 Consensus size: 13
25923882 AAATTAATTT
25923892 TTAATAAAAAATA
1 TTAATAAAAAATA
** *
25923905 TTTCTTAAAAATA
1 TTAATAAAAAATA
25923918 TTAATAAAAAATA
1 TTAATAAAAAATA
25923931 T
1 T
25923932 AACAAAAATA
Statistics
Matches: 21, Mismatches: 6, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.60, C:0.03, G:0.00, T:0.38
Consensus pattern (13 bp):
TTAATAAAAAATA
Found at i:25924623 original size:16 final size:16
Alignment explanation
Indices: 25924602--25924651 Score: 52
Period size: 13 Copynumber: 3.2 Consensus size: 16
25924592 ATATTTAGTC
25924602 ATATAATAAATTATTA
1 ATATAATAAATTATTA
*
25924618 ATATAAT---GTATTA
1 ATATAATAAATTATTA
*
25924631 AAATAATAAATTATTGA
1 ATATAATAAATTATT-A
25924648 ATAT
1 ATAT
25924652 TTCAATTTTA
Statistics
Matches: 26, Mismatches: 4, Indels: 7
0.70 0.11 0.19
Matches are distributed among these distances:
13 11 0.42
16 11 0.42
17 4 0.15
ACGTcount: A:0.54, C:0.00, G:0.04, T:0.42
Consensus pattern (16 bp):
ATATAATAAATTATTA
Found at i:25925510 original size:20 final size:20
Alignment explanation
Indices: 25925485--25925522 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
25925475 ACTTCTTGAT
*
25925485 TCAACTTTCTTTTTCATTCA
1 TCAACTTTCTCTTTCATTCA
25925505 TCAACTTTCTCTTTCATT
1 TCAACTTTCTCTTTCATT
25925523 AATTTTATAC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.18, C:0.26, G:0.00, T:0.55
Consensus pattern (20 bp):
TCAACTTTCTCTTTCATTCA
Found at i:25934673 original size:24 final size:24
Alignment explanation
Indices: 25934621--25934669 Score: 64
Period size: 23 Copynumber: 2.1 Consensus size: 24
25934611 CCCTACTGCT
*
25934621 AGTCACTACCATCCGACGTCCACC
1 AGTCACTACCATCCGACGTACACC
* *
25934645 AGTCAC-ACCGTCCGGCGTACACC
1 AGTCACTACCATCCGACGTACACC
25934668 AG
1 AG
25934670 GTCATTGACG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
23 16 0.73
24 6 0.27
ACGTcount: A:0.24, C:0.43, G:0.18, T:0.14
Consensus pattern (24 bp):
AGTCACTACCATCCGACGTACACC
Found at i:25938397 original size:203 final size:202
Alignment explanation
Indices: 25938028--25938436 Score: 784
Period size: 203 Copynumber: 2.0 Consensus size: 202
25938018 GCCAGCCTTC
25938028 ATTTTTCTTTTCCCTTGTTTTTTTTTTGGTCATAATAATAGTTAGATTATGTTACTAATGGATGG
1 ATTTTTCTTTTCCCTTGTTTTTTTTTTGGTCATAATAATAGTTAGATTATGTTACTAATGGATGG
*
25938093 CGATAGCCCAATGCAGCAAAAATGAATGCAGGTGGCTCTCTTATGCAAGGATTTTTAAAGAATTA
66 CGATAGCCCAATGCAGCAAAAATGAATGCAGGTGGCTCTCTTATGCAAGGACTTTTAAAGAATTA
25938158 AAAGCCACAAATTTAGTTGCTCATTAGAAAGAGAAACTTCACTTCCACCAAACAAAATGATTACT
131 AAAGCCACAAATTTAGTTGCTCATTAGAAAGAGAAACTTCACTTCCACCAAACAAAATGATTACT
25938223 GCAACCA
196 GCAACCA
25938230 ATTTTTCTTTTCCCTTGTTTTTTTTTTGTGGTCATAATAATAGTTAGATTATGTTACTAATGGAT
1 ATTTTTCTTTTCCCTTG-TTTTTTTTT-TGGTCATAATAATAGTTAGATTATGTTACTAATGGAT
25938295 GGCGATAGCCCAATGCAGCAAAAATGAATGCAGGTGGCTCTCTTATGCAAGG-CTTTTAAAGAAT
64 GGCGATAGCCCAATGCAGCAAAAATGAATGCAGGTGGCTCTCTTATGCAAGGACTTTTAAAGAAT
25938359 TAAAAGCCACAAATTTAGTTGCTCATTAGAAAGAGAAACTTCACTTCCACCAAACAAAATGATTA
129 TAAAAGCCACAAATTTAGTTGCTCATTAGAAAGAGAAACTTCACTTCCACCAAACAAAATGATTA
25938424 CTGCAACCA
194 CTGCAACCA
25938433 ATTT
1 ATTT
25938437 GGTTGCTTAT
Statistics
Matches: 204, Mismatches: 1, Indels: 3
0.98 0.00 0.01
Matches are distributed among these distances:
202 17 0.08
203 98 0.48
204 89 0.44
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.34
Consensus pattern (202 bp):
ATTTTTCTTTTCCCTTGTTTTTTTTTTGGTCATAATAATAGTTAGATTATGTTACTAATGGATGG
CGATAGCCCAATGCAGCAAAAATGAATGCAGGTGGCTCTCTTATGCAAGGACTTTTAAAGAATTA
AAAGCCACAAATTTAGTTGCTCATTAGAAAGAGAAACTTCACTTCCACCAAACAAAATGATTACT
GCAACCA
Found at i:25943970 original size:16 final size:15
Alignment explanation
Indices: 25943949--25944019 Score: 67
Period size: 16 Copynumber: 4.7 Consensus size: 15
25943939 CCCTTGCATG
25943949 TGCGAACCCCCTTACA
1 TGCGAACCCCCTTA-A
*
25943965 TGCGAACCCAC-TATA
1 TGCGAACCCCCTTA-A
*
25943980 GGCGAA-CCCCTT-A
1 TGCGAACCCCCTTAA
25943993 TGCGAACCCCCTATAA
1 TGCGAACCCCCT-TAA
25944009 GTGCGAACCCC
1 -TGCGAACCCC
25944020 TGCTTGCAAA
Statistics
Matches: 45, Mismatches: 5, Indels: 9
0.76 0.08 0.15
Matches are distributed among these distances:
13 6 0.13
14 8 0.18
15 10 0.22
16 11 0.24
17 10 0.22
ACGTcount: A:0.27, C:0.39, G:0.17, T:0.17
Consensus pattern (15 bp):
TGCGAACCCCCTTAA
Found at i:25943986 original size:15 final size:14
Alignment explanation
Indices: 25943966--25944020 Score: 58
Period size: 15 Copynumber: 3.7 Consensus size: 14
25943956 CCCCTTACAT
25943966 GCGAACCCACTATAG
1 GCGAACCC-CTATAG
*
25943981 GCGAACCCCT-TAT
1 GCGAACCCCTATAG
25943994 GCGAACCCCCTATAAG
1 GCGAA-CCCCTAT-AG
25944010 TGCGAACCCCT
1 -GCGAACCCCT
25944021 GCTTGCAAAC
Statistics
Matches: 34, Mismatches: 2, Indels: 7
0.79 0.05 0.16
Matches are distributed among these distances:
13 7 0.21
14 7 0.21
15 9 0.26
16 6 0.18
17 5 0.15
ACGTcount: A:0.27, C:0.38, G:0.18, T:0.16
Consensus pattern (14 bp):
GCGAACCCCTATAG
Found at i:25943999 original size:13 final size:13
Alignment explanation
Indices: 25943949--25944002 Score: 54
Period size: 15 Copynumber: 3.8 Consensus size: 13
25943939 CCCTTGCATG
25943949 TGCGAACCCCCTTACA
1 TGCGAA-CCCCTT--A
25943965 TGCGAACCCACTATA
1 TGCGAACCC-CT-TA
*
25943980 GGCGAACCCCTTA
1 TGCGAACCCCTTA
25943993 TGCGAACCCC
1 TGCGAACCCC
25944003 CTATAAGTGC
Statistics
Matches: 34, Mismatches: 2, Indels: 7
0.79 0.05 0.16
Matches are distributed among these distances:
13 11 0.32
14 2 0.06
15 12 0.35
16 8 0.24
17 1 0.03
ACGTcount: A:0.26, C:0.41, G:0.17, T:0.17
Consensus pattern (13 bp):
TGCGAACCCCTTA
Found at i:25944000 original size:28 final size:31
Alignment explanation
Indices: 25943948--25944020 Score: 98
Period size: 30 Copynumber: 2.4 Consensus size: 31
25943938 CCCCTTGCAT
25943948 GTGCGAACCCCCTTACATGCGAACCCACTAT-A
1 GTGCGAA-CCCCTTA-ATGCGAACCCACTATAA
*
25943980 G-GCGAACCCCTT-ATGCGAACCCCCTATAA
1 GTGCGAACCCCTTAATGCGAACCCACTATAA
25944009 GTGCGAACCCCT
1 GTGCGAACCCCT
25944021 GCTTGCAAAC
Statistics
Matches: 38, Mismatches: 1, Indels: 6
0.84 0.02 0.13
Matches are distributed among these distances:
28 14 0.37
29 2 0.05
30 16 0.42
31 5 0.13
32 1 0.03
ACGTcount: A:0.26, C:0.38, G:0.18, T:0.18
Consensus pattern (31 bp):
GTGCGAACCCCTTAATGCGAACCCACTATAA
Found at i:25944265 original size:24 final size:24
Alignment explanation
Indices: 25944216--25944265 Score: 59
Period size: 24 Copynumber: 2.1 Consensus size: 24
25944206 ATATACATAT
*
25944216 TGCGAACCTTATATGAATTAGTTG
1 TGCGAACCTTATATGAATTACTTG
25944240 TGCGAACC-TATGA-GAATTACTATG
1 TGCGAACCTTAT-ATGAATTACT-TG
25944264 TG
1 TG
25944266 AACCCTACCT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
23 10 0.43
24 13 0.57
ACGTcount: A:0.30, C:0.14, G:0.22, T:0.34
Consensus pattern (24 bp):
TGCGAACCTTATATGAATTACTTG
Found at i:25944414 original size:23 final size:21
Alignment explanation
Indices: 25944378--25944427 Score: 57
Period size: 23 Copynumber: 2.3 Consensus size: 21
25944368 AGTGCTGTAC
25944378 GAACCCTTTATGTAGTATCATGT
1 GAACCCTTTATGTA-TAT-ATGT
*
25944401 GAACCC-TTAGTGTATATGTGT
1 GAACCCTTTA-TGTATATATGT
25944422 GAACCC
1 GAACCC
25944428 CTTTGTGTGA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
21 9 0.36
22 6 0.24
23 10 0.40
ACGTcount: A:0.26, C:0.20, G:0.20, T:0.34
Consensus pattern (21 bp):
GAACCCTTTATGTATATATGT
Found at i:25944445 original size:28 final size:28
Alignment explanation
Indices: 25944413--25944467 Score: 76
Period size: 28 Copynumber: 2.0 Consensus size: 28
25944403 ACCCTTAGTG
* *
25944413 TATATGTGTGAACCC-CTTTGTGTGAACC
1 TATATGTGCG-ACCCTCTTTGTGCGAACC
25944441 TATATGTGCGACCCTCTTTGTGCGAAC
1 TATATGTGCGACCCTCTTTGTGCGAAC
25944468 TGTAACATCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
27 4 0.17
28 20 0.83
ACGTcount: A:0.20, C:0.24, G:0.22, T:0.35
Consensus pattern (28 bp):
TATATGTGCGACCCTCTTTGTGCGAACC
Found at i:25946261 original size:28 final size:28
Alignment explanation
Indices: 25946198--25946330 Score: 67
Period size: 28 Copynumber: 4.6 Consensus size: 28
25946188 ATACTAGAAA
* * *
25946198 AAAGGACATGCCTTTGTGGAAAATCTCTATT
1 AAAGGACA-GCATTTGTGGAGAA-C-CTCTT
*
25946229 AAAGGTA-AGCATTTGTGGTGAACCTCTT
1 AAAGG-ACAGCATTTGTGGAGAACCTCTT
** * * *
25946257 AAAGGATTGCCTTTGTGGAAAAACT-TT
1 AAAGGACAGCATTTGTGGAGAACCTCTT
* * *
25946284 AAAAAGGTA-AGCCTTTGTAGCGAACCTCTT
1 --AAAGG-ACAGCATTTGTGGAGAACCTCTT
25946314 AAAGGACA-CATTTGTGG
1 AAAGGACAGCATTTGTGG
25946331 CAAATCTTTG
Statistics
Matches: 79, Mismatches: 16, Indels: 18
0.70 0.14 0.16
Matches are distributed among these distances:
27 11 0.14
28 28 0.35
29 19 0.24
30 14 0.18
31 6 0.08
32 1 0.01
ACGTcount: A:0.32, C:0.15, G:0.23, T:0.30
Consensus pattern (28 bp):
AAAGGACAGCATTTGTGGAGAACCTCTT
Found at i:25946301 original size:57 final size:58
Alignment explanation
Indices: 25946206--25946319 Score: 167
Period size: 57 Copynumber: 2.0 Consensus size: 58
25946196 AAAAAGGACA
* * * *
25946206 TGCCTTTGTGGAAAATCTCTATTAAAGGTAAGCATTTGTGGTGAACCTCTTAAAGGAT
1 TGCCTTTGTGGAAAAACTCTATAAAAGGTAAGCATTTGTAGCGAACCTCTTAAAGGAT
* *
25946264 TGCCTTTGTGGAAAAACTTTA-AAAAGGTAAGCCTTTGTAGCGAACCTCTTAAAGGA
1 TGCCTTTGTGGAAAAACTCTATAAAAGGTAAGCATTTGTAGCGAACCTCTTAAAGGA
25946320 CACATTTGTG
Statistics
Matches: 50, Mismatches: 6, Indels: 1
0.88 0.11 0.02
Matches are distributed among these distances:
57 31 0.62
58 19 0.38
ACGTcount: A:0.32, C:0.15, G:0.22, T:0.32
Consensus pattern (58 bp):
TGCCTTTGTGGAAAAACTCTATAAAAGGTAAGCATTTGTAGCGAACCTCTTAAAGGAT
Found at i:25949282 original size:17 final size:17
Alignment explanation
Indices: 25949256--25949303 Score: 69
Period size: 17 Copynumber: 2.8 Consensus size: 17
25949246 CTGACCCATT
*
25949256 CACACAGCCATGTGACC
1 CACACGGCCATGTGACC
*
25949273 CACAGGGCCATGTGACC
1 CACACGGCCATGTGACC
*
25949290 CACACGACCATGTG
1 CACACGGCCATGTG
25949304 CTAGGTTGTA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
17 27 1.00
ACGTcount: A:0.27, C:0.38, G:0.23, T:0.12
Consensus pattern (17 bp):
CACACGGCCATGTGACC
Found at i:25951194 original size:19 final size:20
Alignment explanation
Indices: 25951162--25951239 Score: 68
Period size: 19 Copynumber: 3.9 Consensus size: 20
25951152 TTATCATAAA
*
25951162 TTTATAATATTTTATATATT
1 TTTAAAATATTTTATATATT
* * *
25951182 TTTCAAA-ATTTTATACACT
1 TTTAAAATATTTTATATATT
25951201 TTTAAAATATTTTATTATATAT
1 TTTAAAATATTTTA-TATAT-T
* * *
25951223 TTTTATATTTTTTATAT
1 TTTAAAATATTTTATAT
25951240 TTATATTTTA
Statistics
Matches: 45, Mismatches: 10, Indels: 5
0.75 0.17 0.08
Matches are distributed among these distances:
19 16 0.36
20 11 0.24
21 6 0.13
22 12 0.27
ACGTcount: A:0.35, C:0.04, G:0.00, T:0.62
Consensus pattern (20 bp):
TTTAAAATATTTTATATATT
Found at i:25951235 original size:22 final size:24
Alignment explanation
Indices: 25951210--25951254 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 24
25951200 TTTTAAAATA
25951210 TTTTAT-TATATATTTT-TATATT
1 TTTTATATATATATTTTATATATT
*
25951232 TTTTATATTTATATTTTATATAT
1 TTTTATATATATATTTTATATAT
25951255 GTTTGAAAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
22 6 0.30
23 9 0.45
24 5 0.25
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (24 bp):
TTTTATATATATATTTTATATATT
Found at i:25951242 original size:15 final size:15
Alignment explanation
Indices: 25951207--25951254 Score: 62
Period size: 15 Copynumber: 3.3 Consensus size: 15
25951197 CACTTTTAAA
*
25951207 ATATTT-TATTATAT
1 ATATTTATATTTTAT
* *
25951221 ATTTTTATATTTTTT
1 ATATTTATATTTTAT
25951236 ATATTTATATTTTAT
1 ATATTTATATTTTAT
25951251 ATAT
1 ATAT
25951255 GTTTGAAAAT
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
14 5 0.18
15 23 0.82
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (15 bp):
ATATTTATATTTTAT
Found at i:25956478 original size:39 final size:39
Alignment explanation
Indices: 25956435--25956513 Score: 158
Period size: 39 Copynumber: 2.0 Consensus size: 39
25956425 TAACAACATG
25956435 AACATGAGTTTAATAATTCTAAGTTAAGAAATGTAATTA
1 AACATGAGTTTAATAATTCTAAGTTAAGAAATGTAATTA
25956474 AACATGAGTTTAATAATTCTAAGTTAAGAAATGTAATTA
1 AACATGAGTTTAATAATTCTAAGTTAAGAAATGTAATTA
25956513 A
1 A
25956514 TCTAACACAA
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 40 1.00
ACGTcount: A:0.47, C:0.05, G:0.13, T:0.35
Consensus pattern (39 bp):
AACATGAGTTTAATAATTCTAAGTTAAGAAATGTAATTA
Found at i:25961603 original size:19 final size:19
Alignment explanation
Indices: 25961574--25961619 Score: 76
Period size: 19 Copynumber: 2.5 Consensus size: 19
25961564 GGATATATTT
25961574 TAAAT-TTATTTAGGTAGA
1 TAAATCTTATTTAGGTAGA
*
25961592 TAAATCTTATTTAGGTGGA
1 TAAATCTTATTTAGGTAGA
25961611 TAAATCTTA
1 TAAATCTTA
25961620 GAATAAATCA
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
18 5 0.19
19 21 0.81
ACGTcount: A:0.37, C:0.04, G:0.15, T:0.43
Consensus pattern (19 bp):
TAAATCTTATTTAGGTAGA
Found at i:25962268 original size:37 final size:37
Alignment explanation
Indices: 25962227--25962301 Score: 123
Period size: 37 Copynumber: 2.0 Consensus size: 37
25962217 TTAACTAAGA
*
25962227 AAAAGGAAATAGAGCTGAGCTATATTAAATGCTATGG
1 AAAAGGAAATAGAGCTGAGCCATATTAAATGCTATGG
* *
25962264 AAAAGGACATAGAGTTGAGCCATATTAAATGCTATGG
1 AAAAGGAAATAGAGCTGAGCCATATTAAATGCTATGG
25962301 A
1 A
25962302 TTAAAATGAA
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 35 1.00
ACGTcount: A:0.43, C:0.09, G:0.24, T:0.24
Consensus pattern (37 bp):
AAAAGGAAATAGAGCTGAGCCATATTAAATGCTATGG
Found at i:25967615 original size:58 final size:58
Alignment explanation
Indices: 25967551--25967663 Score: 190
Period size: 58 Copynumber: 1.9 Consensus size: 58
25967541 GGAACGAGTA
* *
25967551 AAGAAGAAAATAAAGTAGATATATGTTAAAGATGAAGATGGCATAAAGAAGTCCTTAT
1 AAGAAGAAAAAAAAGCAGATATATGTTAAAGATGAAGATGGCATAAAGAAGTCCTTAT
**
25967609 AAGAAGAAAAAAAAGCAGATATATGTTAAAGATGAAGATGGCATGTAGAAGTCCT
1 AAGAAGAAAAAAAAGCAGATATATGTTAAAGATGAAGATGGCATAAAGAAGTCCT
25967664 AAGCAGCCTT
Statistics
Matches: 51, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
58 51 1.00
ACGTcount: A:0.50, C:0.06, G:0.22, T:0.22
Consensus pattern (58 bp):
AAGAAGAAAAAAAAGCAGATATATGTTAAAGATGAAGATGGCATAAAGAAGTCCTTAT
Found at i:25971194 original size:25 final size:25
Alignment explanation
Indices: 25971140--25971231 Score: 78
Period size: 25 Copynumber: 3.7 Consensus size: 25
25971130 TACGGTACAT
* * * *
25971140 GTATGCTCATACTAGCTATGAAT-T
1 GTATGCTCACACGAGCTATAAATCA
** * *
25971164 GATATGCTCACTTGAGCTATAGATCG
1 G-TATGCTCACACGAGCTATAAATCA
* *
25971190 GTATGCTCTCACGAGCTGTAAATCA
1 GTATGCTCACACGAGCTATAAATCA
25971215 GTATGCTCACACGAGCT
1 GTATGCTCACACGAGCT
25971232 GTGGGTTGGA
Statistics
Matches: 52, Mismatches: 14, Indels: 3
0.75 0.20 0.04
Matches are distributed among these distances:
24 1 0.02
25 50 0.96
26 1 0.02
ACGTcount: A:0.27, C:0.22, G:0.21, T:0.30
Consensus pattern (25 bp):
GTATGCTCACACGAGCTATAAATCA
Found at i:25971232 original size:25 final size:25
Alignment explanation
Indices: 25971166--25971233 Score: 82
Period size: 25 Copynumber: 2.7 Consensus size: 25
25971156 TATGAATTGA
** * * *
25971166 TATGCTCACTTGAGCTATAGATCGG
1 TATGCTCACACGAGCTGTAAATCAG
*
25971191 TATGCTCTCACGAGCTGTAAATCAG
1 TATGCTCACACGAGCTGTAAATCAG
25971216 TATGCTCACACGAGCTGT
1 TATGCTCACACGAGCTGT
25971234 GGGTTGGAAC
Statistics
Matches: 36, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
25 36 1.00
ACGTcount: A:0.25, C:0.24, G:0.22, T:0.29
Consensus pattern (25 bp):
TATGCTCACACGAGCTGTAAATCAG
Found at i:25976733 original size:18 final size:18
Alignment explanation
Indices: 25976687--25976744 Score: 64
Period size: 18 Copynumber: 3.2 Consensus size: 18
25976677 ATGCACTCCG
* * *
25976687 TGCATTCCATACAAAACA
1 TGCATTCCATGCGAACCA
25976705 TGCATTCCATGC-AACCCA
1 TGCATTCCATGCGAA-CCA
*
25976723 TGCATTTCATGCGAACCA
1 TGCATTCCATGCGAACCA
25976741 TGCA
1 TGCA
25976745 ATGTGTTGCA
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
17 2 0.06
18 31 0.89
19 2 0.06
ACGTcount: A:0.33, C:0.31, G:0.12, T:0.24
Consensus pattern (18 bp):
TGCATTCCATGCGAACCA
Found at i:25991512 original size:18 final size:18
Alignment explanation
Indices: 25991491--25991535 Score: 56
Period size: 18 Copynumber: 2.5 Consensus size: 18
25991481 GCATTTCACA
25991491 CATTCCATGC-AACCCATG
1 CATTCCATGCGAA-CCATG
*
25991509 CATTTCATGCGAACCATG
1 CATTCCATGCGAACCATG
*
25991527 CATCCCATG
1 CATTCCATG
25991536 AAATGTGCTG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
18 21 0.91
19 2 0.09
ACGTcount: A:0.27, C:0.36, G:0.13, T:0.24
Consensus pattern (18 bp):
CATTCCATGCGAACCATG
Found at i:25996342 original size:17 final size:17
Alignment explanation
Indices: 25996320--25996353 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
25996310 CACTAACATG
*
25996320 AAAATGTAATGACAATA
1 AAAATGCAATGACAATA
25996337 AAAATGCAATGACAATA
1 AAAATGCAATGACAATA
25996354 TATATTTATC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.59, C:0.09, G:0.12, T:0.21
Consensus pattern (17 bp):
AAAATGCAATGACAATA
Found at i:26005925 original size:36 final size:36
Alignment explanation
Indices: 26005885--26005958 Score: 139
Period size: 36 Copynumber: 2.1 Consensus size: 36
26005875 AACTGAAGTG
*
26005885 ATAGAAAAATTGCCATCTGCCACTAGTGTTAGGGGT
1 ATAGAAAAATTGCCATCTGCCACCAGTGTTAGGGGT
26005921 ATAGAAAAATTGCCATCTGCCACCAGTGTTAGGGGT
1 ATAGAAAAATTGCCATCTGCCACCAGTGTTAGGGGT
26005957 AT
1 AT
26005959 TATAAGTTTT
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 37 1.00
ACGTcount: A:0.31, C:0.18, G:0.24, T:0.27
Consensus pattern (36 bp):
ATAGAAAAATTGCCATCTGCCACCAGTGTTAGGGGT
Found at i:26009086 original size:27 final size:27
Alignment explanation
Indices: 26009056--26009109 Score: 108
Period size: 27 Copynumber: 2.0 Consensus size: 27
26009046 AAAGAGGAGT
26009056 AAGCATATAGCTTAGAAAGTAAACATA
1 AAGCATATAGCTTAGAAAGTAAACATA
26009083 AAGCATATAGCTTAGAAAGTAAACATA
1 AAGCATATAGCTTAGAAAGTAAACATA
26009110 TGAAAAATAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.52, C:0.11, G:0.15, T:0.22
Consensus pattern (27 bp):
AAGCATATAGCTTAGAAAGTAAACATA
Found at i:26010007 original size:43 final size:41
Alignment explanation
Indices: 26009949--26010149 Score: 213
Period size: 43 Copynumber: 4.8 Consensus size: 41
26009939 AAATTCAGTG
* *
26009949 ATACGGGGAATCAGCACATAGCAACCCCTTTCACAGTAAAAA
1 ATACGGGGAATCAGCACTTAGCAACCCCTTT-ACAGTCAAAA
* * * **
26009991 ATACGGCGGATTCAGCACTTAGCAACCACCTTTATATTCAGTA
1 ATACGG-GGAATCAGCACTTAGCAACC-CCTTTACAGTCAAAA
* * * *
26010034 ATACGGGGAATCAGCACATAGCAGCCCCTTTCACAATCAAAG
1 ATACGGGGAATCAGCACTTAGCAACCCCTTT-ACAGTCAAAA
* * *
26010076 ATACGGTGGAATCAGCACTTAGCAACCATCTTTAAAGTCAATA
1 ATACGG-GGAATCAGCACTTAGCAACC-CCTTTACAGTCAAAA
*
26010119 ATTCGGGGAATCAGCACTTAGCAACCCCTTT
1 ATACGGGGAATCAGCACTTAGCAACCCCTTT
26010150 TTATTCAATG
Statistics
Matches: 130, Mismatches: 24, Indels: 11
0.79 0.15 0.07
Matches are distributed among these distances:
41 9 0.07
42 54 0.42
43 58 0.45
44 9 0.07
ACGTcount: A:0.34, C:0.26, G:0.17, T:0.22
Consensus pattern (41 bp):
ATACGGGGAATCAGCACTTAGCAACCCCTTTACAGTCAAAA
Found at i:26010056 original size:85 final size:85
Alignment explanation
Indices: 26009914--26010149 Score: 339
Period size: 85 Copynumber: 2.8 Consensus size: 85
26009904 GTTACTCGGT
* *
26009914 GGATTCAGCACTTAACAACCACC-TTAAATTCAGTGATACGGGGAATCAGCACATAGCAACCCCT
1 GGATTCAGCACTTAGCAACCACCTTTAAATTCAGTAATACGGGGAATCAGCACATAGCAACCCCT
*
26009978 TTCACAGTAAAAAATACGGC
66 TTCACAATAAAAAATACGGC
* *
26009998 GGATTCAGCACTTAGCAACCACCTTTATATTCAGTAATACGGGGAATCAGCACATAGCAGCCCCT
1 GGATTCAGCACTTAGCAACCACCTTTAAATTCAGTAATACGGGGAATCAGCACATAGCAACCCCT
* * *
26010063 TTCACAATCAAAGATACGGT
66 TTCACAATAAAAAATACGGC
* * * * * *
26010083 GGAATCAGCACTTAGCAACCATCTTTAAAGTCAATAATTCGGGGAATCAGCACTTAGCAACCCCT
1 GGATTCAGCACTTAGCAACCACCTTTAAATTCAGTAATACGGGGAATCAGCACATAGCAACCCCT
26010148 TT
66 TT
26010150 TTATTCAATG
Statistics
Matches: 135, Mismatches: 16, Indels: 1
0.89 0.11 0.01
Matches are distributed among these distances:
84 22 0.16
85 113 0.84
ACGTcount: A:0.34, C:0.26, G:0.17, T:0.23
Consensus pattern (85 bp):
GGATTCAGCACTTAGCAACCACCTTTAAATTCAGTAATACGGGGAATCAGCACATAGCAACCCCT
TTCACAATAAAAAATACGGC
Found at i:26010080 original size:42 final size:40
Alignment explanation
Indices: 26009949--26010149 Score: 197
Period size: 42 Copynumber: 4.8 Consensus size: 40
26009939 AAATTCAGTG
* * *
26009949 ATACGGGGAATCAGCACATAGCAACCCCTTTCACAGTAAAAA
1 ATACGGGGAATCAGCACTTAGCAACCCCTTT-ACAAT-CAAA
* * * *
26009991 ATACGGCGGATTCAGCACTTAGCAACCACCTTTATATTCAGTA
1 ATACGG-GGAATCAGCACTTAGCAACC-CCTTTACAATCA-AA
* *
26010034 ATACGGGGAATCAGCACATAGCAGCCCCTTTCACAATCAAA
1 ATACGGGGAATCAGCACTTAGCAACCCCTTT-ACAATCAAA
*
26010075 GATACGGTGGAATCAGCACTTAGCAACCATCTTTA-AAGTCAATA
1 -ATACGG-GGAATCAGCACTTAGCAACC-CCTTTACAA-TCAA-A
*
26010119 ATTCGGGGAATCAGCACTTAGCAACCCCTTT
1 ATACGGGGAATCAGCACTTAGCAACCCCTTT
26010150 TTATTCAATG
Statistics
Matches: 133, Mismatches: 17, Indels: 19
0.79 0.10 0.11
Matches are distributed among these distances:
41 10 0.08
42 57 0.43
43 56 0.42
44 10 0.08
ACGTcount: A:0.34, C:0.26, G:0.17, T:0.22
Consensus pattern (40 bp):
ATACGGGGAATCAGCACTTAGCAACCCCTTTACAATCAAA
Found at i:26015754 original size:42 final size:44
Alignment explanation
Indices: 26015656--26015760 Score: 142
Period size: 42 Copynumber: 2.4 Consensus size: 44
26015646 AATGATTCGA
*
26015656 GGAATCAACACTTAGGAACCCCTTTTCACATTCAAAAATACGGT
1 GGAATCAACACTTAGCAACCCCTTTTCACATTCAAAAATACGGT
* * *
26015700 GGAAGCAACACTTAGCAACCCC-TTTCACATT-TAAGATACGGT
1 GGAATCAACACTTAGCAACCCCTTTTCACATTCAAAAATACGGT
* *
26015742 GGGATCAGCACTTAGCAAC
1 GGAATCAACACTTAGCAAC
26015761 TACAAATGAT
Statistics
Matches: 54, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
42 25 0.46
43 9 0.17
44 20 0.37
ACGTcount: A:0.34, C:0.26, G:0.17, T:0.23
Consensus pattern (44 bp):
GGAATCAACACTTAGCAACCCCTTTTCACATTCAAAAATACGGT
Found at i:26015816 original size:27 final size:27
Alignment explanation
Indices: 26015774--26015825 Score: 86
Period size: 27 Copynumber: 1.9 Consensus size: 27
26015764 AAATGATTCA
*
26015774 GGGAATCACCAGTTAGCAACCCCTTGG
1 GGGAATCACCACTTAGCAACCCCTTGG
*
26015801 GGGAATCAGCACTTAGCAACCCCTT
1 GGGAATCACCACTTAGCAACCCCTT
26015826 CACATTTAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.27, C:0.31, G:0.23, T:0.19
Consensus pattern (27 bp):
GGGAATCACCACTTAGCAACCCCTTGG
Found at i:26015896 original size:101 final size:102
Alignment explanation
Indices: 26015708--26015897 Score: 267
Period size: 101 Copynumber: 1.9 Consensus size: 102
26015698 GTGGAAGCAA
* * * *
26015708 CACTTAGCAACCCCTTTCACATTTAAGATACGGTGGGATCAGCACTTAGCAACTACAAATGATTC
1 CACTTAGCAACCCCTTTCACATTTAAAATACGGTGGAATCAGCACTTAGCAACCACAAATGAATC
** *
26015773 AGGGAATCACCAGTTAGCAACCCCTTGGGGGAATCAG
66 AGGGAATCAAAACTTAGCAACCCCTTGGGGGAATCAG
* *
26015810 CACTTAGCAACCCC-TTCACATTTAAAATACGGTGGAATCATCACTTAGCAACCACCAATGAATC
1 CACTTAGCAACCCCTTTCACATTTAAAATACGGTGGAATCAGCACTTAGCAACCACAAATGAATC
*
26015874 -GAGGAATCAAAACTTAGTAACCCC
66 AG-GGAATCAAAACTTAGCAACCCC
26015898 CTTTATTTTA
Statistics
Matches: 77, Mismatches: 10, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
100 1 0.01
101 62 0.81
102 14 0.18
ACGTcount: A:0.34, C:0.27, G:0.17, T:0.22
Consensus pattern (102 bp):
CACTTAGCAACCCCTTTCACATTTAAAATACGGTGGAATCAGCACTTAGCAACCACAAATGAATC
AGGGAATCAAAACTTAGCAACCCCTTGGGGGAATCAG
Found at i:26022771 original size:75 final size:76
Alignment explanation
Indices: 26022590--26022789 Score: 278
Period size: 75 Copynumber: 2.6 Consensus size: 76
26022580 TGGATTCAGT
*
26022590 ACTTAGCAAGCACCAATGATTCAGGGAATCAGCACTTAGCAACCCCTTTTCACATTCAAAAATAC
1 ACTTAGCAACCACCAATGATTCAGGGAATCAGCACTTAGCAACCCC-TTTCACATTCAAAAATAC
*
26022655 GATGGAATGAGC
65 GATGGAATAAGC
* * * * *
26022667 ACTTAGCAACCACCAATGAATCAGAGAATCAGTACTTAGCAACCCCTTTCACATT-TAAGATACG
1 ACTTAGCAACCACCAATGATTCAGGGAATCAGCACTTAGCAACCCCTTTCACATTCAAAAATACG
*
26022731 GT-GAGATAAGC
66 ATGGA-ATAAGC
* *
26022742 ACTTAGCAACCACCAATGATTCGGGGAATCAACACTTAGCAACCCCTT
1 ACTTAGCAACCACCAATGATTCAGGGAATCAGCACTTAGCAACCCCTT
26022790 CGGGGAATCA
Statistics
Matches: 109, Mismatches: 13, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
74 2 0.02
75 56 0.51
76 9 0.08
77 42 0.39
ACGTcount: A:0.36, C:0.26, G:0.16, T:0.22
Consensus pattern (76 bp):
ACTTAGCAACCACCAATGATTCAGGGAATCAGCACTTAGCAACCCCTTTCACATTCAAAAATACG
ATGGAATAAGC
Found at i:26022799 original size:27 final size:27
Alignment explanation
Indices: 26022761--26022814 Score: 99
Period size: 27 Copynumber: 2.0 Consensus size: 27
26022751 CCACCAATGA
*
26022761 TTCGGGGAATCAACACTTAGCAACCCC
1 TTCGGGGAATCAACACTTAACAACCCC
26022788 TTCGGGGAATCAACACTTAACAACCCC
1 TTCGGGGAATCAACACTTAACAACCCC
26022815 CTTCACATTT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.31, C:0.33, G:0.17, T:0.19
Consensus pattern (27 bp):
TTCGGGGAATCAACACTTAACAACCCC
Found at i:26022845 original size:102 final size:102
Alignment explanation
Indices: 26022700--26022889 Score: 292
Period size: 102 Copynumber: 1.9 Consensus size: 102
26022690 GAGAATCAGT
* * * * *
26022700 ACTTAGCAACCCCTTTCACATTTAAGATACGGTGAGATAAGCACTTAGCAACCACCAATGATTCG
1 ACTTAACAACCCCCTTCACATTTAAAATAAGGTGAGATAAGCACTTAGCAACCACCAATGAATCG
26022765 GGGAATCAACACTTAGCAACCCCTTCGGGGAATCAAC
66 GGGAATCAACACTTAGCAACCCCTTCGGGGAATCAAC
* *
26022802 ACTTAACAACCCCCTTCACATTTAAAATATAGTTGA-ATCAGCACTTAGCAACCACCAATGAATC
1 ACTTAACAACCCCCTTCACATTTAAAATA-AGGTGAGATAAGCACTTAGCAACCACCAATGAATC
*
26022866 GGGGAATCAGCACTTAGCAACCCC
65 GGGGAATCAACACTTAGCAACCCC
26022890 CTTTATATTC
Statistics
Matches: 79, Mismatches: 8, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
102 75 0.95
103 4 0.05
ACGTcount: A:0.35, C:0.28, G:0.15, T:0.22
Consensus pattern (102 bp):
ACTTAACAACCCCCTTCACATTTAAAATAAGGTGAGATAAGCACTTAGCAACCACCAATGAATCG
GGGAATCAACACTTAGCAACCCCTTCGGGGAATCAAC
Found at i:26036923 original size:41 final size:41
Alignment explanation
Indices: 26036864--26037075 Score: 185
Period size: 41 Copynumber: 5.1 Consensus size: 41
26036854 ACAAAAATAC
* *
26036864 ATTCAGGGGTACTGAAGTACAAACAGGGGCACGTATGTGCA
1 ATTCAGGGGTACTAAAGTACAAACAGGGGCACATATGTGCA
* * ** *
26036905 ATTTAGGGGTGCTAAAGTACAAACAGGGGCACGCATGTGTA
1 ATTCAGGGGTACTAAAGTACAAACAGGGGCACATATGTGCA
* *
26036946 ATTCAGGGGGTAAC-GAAGTACAAACAGGTGCACATATGTGCA
1 ATTCA-GGGGT-ACTAAAGTACAAACAGGGGCACATATGTGCA
* ** * * *
26036988 ATTCAAGGGTACCGAAGTACAAACAGAGGAACATATGTGTA
1 ATTCAGGGGTACTAAAGTACAAACAGGGGCACATATGTGCA
* * * * * **
26037029 ATTTAGGGGTA-TCGAAGTAGAAACAAGGGCGCGCATGTGCA
1 ATTCAGGGGTACT-AAAGTACAAACAGGGGCACATATGTGCA
26037070 ATTCAG
1 ATTCAG
26037076 CAATAATCAT
Statistics
Matches: 138, Mismatches: 29, Indels: 8
0.79 0.17 0.05
Matches are distributed among these distances:
40 2 0.01
41 102 0.74
42 33 0.24
43 1 0.01
ACGTcount: A:0.34, C:0.16, G:0.30, T:0.20
Consensus pattern (41 bp):
ATTCAGGGGTACTAAAGTACAAACAGGGGCACATATGTGCA
Found at i:26037008 original size:83 final size:82
Alignment explanation
Indices: 26036864--26037074 Score: 235
Period size: 83 Copynumber: 2.6 Consensus size: 82
26036854 ACAAAAATAC
* * * * *
26036864 ATTCAGGGGT-ACTGAAGTACAAACAGGGGCACGTATGTGCAATTTAGGGGTGCTAAAGTACAAA
1 ATTCAGGGGTAAC-GAAGTACAAACAGGGGCACATATGTGCAATTCAAGGGTACCAAAGTACAAA
* * *
26036928 CAGGGGCACGCATGTGTA
65 CAGAGGAACACATGTGTA
* *
26036946 ATTCAGGGGGTAACGAAGTACAAACAGGTGCACATATGTGCAATTCAAGGGTACCGAAGTACAAA
1 ATTCA-GGGGTAACGAAGTACAAACAGGGGCACATATGTGCAATTCAAGGGTACCAAAGTACAAA
*
26037011 CAGAGGAACATATGTGTA
65 CAGAGGAACACATGTGTA
* * * * * **
26037029 ATTTAGGGGTATCGAAGTAGAAACAAGGGCGCGCATGTGCAATTCA
1 ATTCAGGGGTAACGAAGTACAAACAGGGGCACATATGTGCAATTCA
26037075 GCAATAATCA
Statistics
Matches: 108, Mismatches: 19, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
82 39 0.36
83 67 0.62
84 2 0.02
ACGTcount: A:0.35, C:0.16, G:0.29, T:0.20
Consensus pattern (82 bp):
ATTCAGGGGTAACGAAGTACAAACAGGGGCACATATGTGCAATTCAAGGGTACCAAAGTACAAAC
AGAGGAACACATGTGTA
Found at i:26039476 original size:509 final size:506
Alignment explanation
Indices: 26038516--26040013 Score: 2264
Period size: 509 Copynumber: 3.0 Consensus size: 506
26038506 CAAAACTTTG
* *
26038516 GGAAAATTACTCTTGTCGCCCTTGGGTTCTCAAACCCTAGATATTTAATC-CAATTTTCCCAACA
1 GGAAAATTACTCTTGTCGCCCTTGGGTTCACAAACCCTAGATATTTAATCAAAATTTT-CCAACA
* *
26038580 GGAATAAGATTTTGTTTCCTCTCCAAAACCAAATAGAATTTCTTTCACCTCCCTCTTTATTCTCA
65 GGAATAGGATTTTGTTTCCTCTCCAAAACCAAATAGAATTTCTTTCACCTCCCTATTTATTCTCA
* * **
26038645 TACTTTATCTTCTTCCATTTCTTTTACATCAAATTTTACATATTTTTGTTACTGAATTATTATTG
130 TATTTTATCTTCTTCCATTTCTTTTACATCAAATTTTACATATTTTTGCTACAAAATTATTATTG
*
26038710 CTTTTCACAAATCAAAGTCAATCTTCATTAACTCGTTTTTCTACCGGAATCAAAATTGTCATTGG
195 CTTTTC-CAAATCAAAGTCAATCTTCATTAACTC-TTTTTCTACCGGAATCAAAATTGTCATTAG
*
26038775 AAACCCCTCAATCTCTACCAAGAAGCGGTAGGGATGCATAAAATCTTGAAGTTGATCTTAAATAT
258 AAACCCCTCAATCTCTACCAAGAAGCGGTAAGGATGCATAAAATCTTGAAGTTGATCTTAAATAT
* * * *
26038840 TTAGAGATTTTCTATCTAACGATAATCTTGCGATTGATTAAAATTATCTTTCTTGATTATTCATT
323 TTATAGATTTTCTATCTAACGATAATCTTGCGATCGATTAAAATGATCTTTCTCGATTATTCA-T
*
26038905 GAATCTTTCAATAATCTTGACAAATCTTGAAAATCGTTATTAATTCTTGTTAAATCTCGTTTCAA
387 GAATCTTTCAATAATCTTGACAAATCTTGAAAATCGTTATTAATTCTTGTTAAATTTCGTTTCAA
* *
26038970 GGACTAGTTTTAGGTGCCCCAAATCAAATTTAAACGTGAGGATTATTGTTTAAGA
452 GGACTAGTTTTAGGTACCCCAAATCAAATTTAAACGTGAGGATTATTGTTCAAGA
* *
26039025 GGAAAATTACTCTTGTCGCCCTTGGGTTCACAAACCCTAGATATTTAGTCAAAATTTTCCAATAG
1 GGAAAATTACTCTTGTCGCCCTTGGGTTCACAAACCCTAGATATTTAATCAAAATTTTCCAACAG
26039090 GAATAGGATTTTGTTTCCTCTCCAAAACCAAATAGAATTTCTTTCACCTCCCTATTTATTCTCAT
66 GAATAGGATTTTGTTTCCTCTCCAAAACCAAATAGAATTTCTTTCACCTCCCTATTTATTCTCAT
*
26039155 ATTTTATCTTCTTCCATTTCTTTTACATCAAATTTTACATATTTTTGCTACAAAATTATTATCGC
131 ATTTTATCTTCTTCCATTTCTTTTACATCAAATTTTACATATTTTTGCTACAAAATTATTATTGC
* * *
26039220 TTTTTCTAAATCAAAGTCAATCTTCATTAACTCATTTTTCTACCGGAATCAAAATTGGCGTTAGA
196 -TTTTCCAAATCAAAGTCAATCTTCATTAACTC-TTTTTCTACCGGAATCAAAATTGTCATTAGA
*
26039285 AACCCCTCAATCTCTACCAAAAAGCGGTAAGGATGCATAAAATCTTGAAGTTGATCTTAAATATT
259 AACCCCTCAATCTCTACCAAGAAGCGGTAAGGATGCATAAAATCTTGAAGTTGATCTTAAATATT
*
26039350 TATAGATTTTCTATCTAACGATAATCTTGCGATCGATTAAAATGATCTTTCTCGATTTTTCATCG
324 TATAGATTTTCTATCTAACGATAATCTTGCGATCGATTAAAATGATCTTTCTCGATTATTCAT-G
*
26039415 AATCTTTCAATAATCTTGACAAATCTTGAAAATCATTATTAATTCTTGTTAAATTTCGTTTCAAG
388 AATCTTTCAATAATCTTGACAAATCTTGAAAATCGTTATTAATTCTTGTTAAATTTCGTTTCAAG
* *
26039480 GACTCA-TTTTAGGTACCCCGAATCAAATTTAAACATGAGGATTATTGTTCAAGA
453 GACT-AGTTTTAGGTACCCCAAATCAAATTTAAACGTGAGGATTATTGTTCAAGA
* *
26039534 GGAAAATTACTCTTGTCACCCTTGGGTTCACAAACCCTAGATATTTAATCAAAATTTTCCAACAA
1 GGAAAATTACTCTTGTCGCCCTTGGGTTCACAAACCCTAGATATTTAATCAAAATTTTCCAACAG
26039599 GAATAGGATTTTGTTTCCTCTCCAAAACCAAATAGAATTTCTTTCACCTCCCTATTTATTCTCAT
66 GAATAGGATTTTGTTTCCTCTCCAAAACCAAATAGAATTTCTTTCACCTCCCTATTTATTCTCAT
*
26039664 ATTTTATCTTCTTCCATTTCTTTTACATCAAATTTTACATATTTTTGCTAAAAAATTATTATTGC
131 ATTTTATCTTCTTCCATTTCTTTTACATCAAATTTTACATATTTTTGCTACAAAATTATTATTG-
26039729 CTTTTCCAAATCAAAGTCAATCTTCATTAA--C----T-T----G-----AAATTGTCATTAGAA
195 CTTTTCCAAATCAAAGTCAATCTTCATTAACTCTTTTTCTACCGGAATCAAAATTGTCATTAGAA
* * * * * * * * *
26039778 ACCCCTCAATGTCTACCAAGAAGCAGTAAGGATGCAT-TAATTTTAAAGTTGATCCTGAATCTGT
260 ACCCCTCAATCTCTACCAAGAAGCGGTAAGGATGCATAAAATCTTGAAGTTGATCTTAAATATTT
* ** * * *
26039842 ATAGATTTTTTTATCTAAAAATAATTTTGTGATCGATTAAAATGATCTTTCTCGATTATTCATTA
325 ATAGA-TTTTCTATCTAACGATAATCTTGCGATCGATTAAAATGATCTTTCTCGATTATTCATGA
*
26039907 GATCTTTCAATAATCTTGACAAATCTTGAAAA-CTGTTATTAATTCTTGTGTAAATCTT-GTTTG
389 -ATCTTTCAATAATCTTGACAAATCTTGAAAATC-GTTATTAATTCTTGT-TAAAT-TTCGTTTC
* ** *
26039970 AAGGACTCGTTTTAGGTACCCCAAATCAGGTTTGAACGTGAGGA
450 AAGGACTAGTTTTAGGTACCCCAAATCAAATTTAAACGTGAGGA
26040014 CCGTTGTTCA
Statistics
Matches: 915, Mismatches: 63, Indels: 38
0.90 0.06 0.04
Matches are distributed among these distances:
491 27 0.03
492 143 0.16
493 46 0.05
494 2 0.00
497 1 0.00
501 1 0.00
502 1 0.00
507 1 0.00
508 1 0.00
509 679 0.74
510 13 0.01
ACGTcount: A:0.31, C:0.18, G:0.11, T:0.39
Consensus pattern (506 bp):
GGAAAATTACTCTTGTCGCCCTTGGGTTCACAAACCCTAGATATTTAATCAAAATTTTCCAACAG
GAATAGGATTTTGTTTCCTCTCCAAAACCAAATAGAATTTCTTTCACCTCCCTATTTATTCTCAT
ATTTTATCTTCTTCCATTTCTTTTACATCAAATTTTACATATTTTTGCTACAAAATTATTATTGC
TTTTCCAAATCAAAGTCAATCTTCATTAACTCTTTTTCTACCGGAATCAAAATTGTCATTAGAAA
CCCCTCAATCTCTACCAAGAAGCGGTAAGGATGCATAAAATCTTGAAGTTGATCTTAAATATTTA
TAGATTTTCTATCTAACGATAATCTTGCGATCGATTAAAATGATCTTTCTCGATTATTCATGAAT
CTTTCAATAATCTTGACAAATCTTGAAAATCGTTATTAATTCTTGTTAAATTTCGTTTCAAGGAC
TAGTTTTAGGTACCCCAAATCAAATTTAAACGTGAGGATTATTGTTCAAGA
Found at i:26042237 original size:14 final size:15
Alignment explanation
Indices: 26042209--26042246 Score: 53
Period size: 14 Copynumber: 2.6 Consensus size: 15
26042199 ATGTTTCACC
26042209 TCCTTCATT-CTCTTT
1 TCCTTC-TTCCTCTTT
26042224 TCC-TCTTCCTCTTT
1 TCCTTCTTCCTCTTT
26042238 TCCTTCTTC
1 TCCTTCTTC
26042247 TTGTCTCTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
13 2 0.10
14 11 0.52
15 8 0.38
ACGTcount: A:0.03, C:0.39, G:0.00, T:0.58
Consensus pattern (15 bp):
TCCTTCTTCCTCTTT
Found at i:26045820 original size:25 final size:25
Alignment explanation
Indices: 26045756--26045870 Score: 97
Period size: 25 Copynumber: 4.6 Consensus size: 25
26045746 GTCATTAGGG
* * * *
26045756 TTACCGAT-TTCAGCTCTTATGAGT
1 TTACCGTTATTCAGCTCATAGGAGC
* * * *
26045780 TTACCGATACTAAGCTCATATGAGC
1 TTACCGTTATTCAGCTCATAGGAGC
* **
26045805 TTACTGTTATTCAGCTCGGAGGAGC
1 TTACCGTTATTCAGCTCATAGGAGC
*
26045830 TTACCGTTATTCAGCTCAAAGGAGC
1 TTACCGTTATTCAGCTCATAGGAGC
**
26045855 TTACTTTTATTCAGCT
1 TTACCGTTATTCAGCT
26045871 TGGAGGAACT
Statistics
Matches: 74, Mismatches: 16, Indels: 1
0.81 0.18 0.01
Matches are distributed among these distances:
24 8 0.11
25 66 0.89
ACGTcount: A:0.24, C:0.22, G:0.18, T:0.36
Consensus pattern (25 bp):
TTACCGTTATTCAGCTCATAGGAGC
Found at i:26045834 original size:50 final size:50
Alignment explanation
Indices: 26045780--26045884 Score: 138
Period size: 50 Copynumber: 2.1 Consensus size: 50
26045770 TCTTATGAGT
* * *
26045780 TTACCGATACTAAGCTCATATGAGCTTACTGTTATTCAGCTCGGAGGAGC
1 TTACCGATACTAAGCTCAAAGGAGCTTACTGTTATTCAGCTCGGAGGAAC
* * * * *
26045830 TTACCGTTATTCAGCTCAAAGGAGCTTACTTTTATTCAGCTTGGAGGAAC
1 TTACCGATACTAAGCTCAAAGGAGCTTACTGTTATTCAGCTCGGAGGAAC
26045880 TTACC
1 TTACC
26045885 ATTTAAAGCT
Statistics
Matches: 47, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
50 47 1.00
ACGTcount: A:0.26, C:0.22, G:0.20, T:0.32
Consensus pattern (50 bp):
TTACCGATACTAAGCTCAAAGGAGCTTACTGTTATTCAGCTCGGAGGAAC
Found at i:26045877 original size:25 final size:25
Alignment explanation
Indices: 26045801--26045883 Score: 112
Period size: 25 Copynumber: 3.3 Consensus size: 25
26045791 AAGCTCATAT
26045801 GAGCTTACTGTTATTCAGCTCGGAG
1 GAGCTTACTGTTATTCAGCTCGGAG
* **
26045826 GAGCTTACCGTTATTCAGCTCAAAG
1 GAGCTTACTGTTATTCAGCTCGGAG
* *
26045851 GAGCTTACTTTTATTCAGCTTGGAG
1 GAGCTTACTGTTATTCAGCTCGGAG
*
26045876 GAACTTAC
1 GAGCTTAC
26045884 CATTTAAAGC
Statistics
Matches: 49, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
25 49 1.00
ACGTcount: A:0.24, C:0.20, G:0.23, T:0.33
Consensus pattern (25 bp):
GAGCTTACTGTTATTCAGCTCGGAG
Found at i:26054341 original size:14 final size:15
Alignment explanation
Indices: 26054313--26054350 Score: 53
Period size: 14 Copynumber: 2.6 Consensus size: 15
26054303 ATGTTTCACA
26054313 TCCTTCGTT-CTCTTT
1 TCCTTC-TTCCTCTTT
26054328 TCC-TCTTCCTCTTT
1 TCCTTCTTCCTCTTT
26054342 TCCTTCTTC
1 TCCTTCTTC
26054351 TTGCCTCTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
13 2 0.10
14 11 0.52
15 8 0.38
ACGTcount: A:0.00, C:0.39, G:0.03, T:0.58
Consensus pattern (15 bp):
TCCTTCTTCCTCTTT
Found at i:26059192 original size:43 final size:41
Alignment explanation
Indices: 26059144--26059324 Score: 168
Period size: 41 Copynumber: 4.3 Consensus size: 41
26059134 TCCCGGATAA
*
26059144 GGTCTTACATGTTAATGCATAT-CGATGCCACTGTCCCAGACAG
1 GGTCTTACATG--AAT-CATATACGATGCCAATGTCCCAGACAG
* * *
26059187 GGTCTTATACGAATCATATACGATGCCAATGTCTCAGACAG
1 GGTCTTACATGAATCATATACGATGCCAATGTCCCAGACAG
* * * *
26059228 GGTCTTATACGAATCATATACGATGCCAATGTCTCAGACAT
1 GGTCTTACATGAATCATATACGATGCCAATGTCCCAGACAG
* ** * * *
26059269 GGTTTTACATGTTTTC-TCACTTCGATGCCAATGTCCCAGGCAT
1 GGTCTTACATG-AATCAT-A-TACGATGCCAATGTCCCAGACAG
26059312 GGTCTTACATGAA
1 GGTCTTACATGAA
26059325 ATCACACCTC
Statistics
Matches: 118, Mismatches: 16, Indels: 9
0.83 0.11 0.06
Matches are distributed among these distances:
40 5 0.04
41 71 0.60
42 3 0.03
43 39 0.33
ACGTcount: A:0.27, C:0.23, G:0.19, T:0.30
Consensus pattern (41 bp):
GGTCTTACATGAATCATATACGATGCCAATGTCCCAGACAG
Found at i:26059213 original size:41 final size:41
Alignment explanation
Indices: 26059161--26059267 Score: 189
Period size: 41 Copynumber: 2.6 Consensus size: 41
26059151 CATGTTAATG
* *
26059161 CATAT-CGATGCCACTGTCCCAGACAGGGTCTTATACGAAT
1 CATATACGATGCCAATGTCTCAGACAGGGTCTTATACGAAT
26059201 CATATACGATGCCAATGTCTCAGACAGGGTCTTATACGAAT
1 CATATACGATGCCAATGTCTCAGACAGGGTCTTATACGAAT
26059242 CATATACGATGCCAATGTCTCAGACA
1 CATATACGATGCCAATGTCTCAGACA
26059268 TGGTTTTACA
Statistics
Matches: 64, Mismatches: 2, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
40 5 0.08
41 59 0.92
ACGTcount: A:0.31, C:0.25, G:0.19, T:0.25
Consensus pattern (41 bp):
CATATACGATGCCAATGTCTCAGACAGGGTCTTATACGAAT
Found at i:26059526 original size:30 final size:30
Alignment explanation
Indices: 26059445--26059587 Score: 187
Period size: 30 Copynumber: 4.7 Consensus size: 30
26059435 ATCCAATGCT
* * * *
26059445 CAAACCAATTCAGCAATATATTTCTATATA
1 CAAATCAATTCGGCAATGTATATCTATATA
* *
26059475 CGAATCAAATTTGGCAATGTATATCTATATA
1 CAAATC-AATTCGGCAATGTATATCTATATA
**
26059506 CAAATCAATTCGATAATGTATATCTATATA
1 CAAATCAATTCGGCAATGTATATCTATATA
*
26059536 CAAATCAATTCGGCAATGTATATCTTTATA
1 CAAATCAATTCGGCAATGTATATCTATATA
*
26059566 CAAATCAATTCGGTAATGTATA
1 CAAATCAATTCGGCAATGTATA
26059588 AAACATATAC
Statistics
Matches: 98, Mismatches: 14, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
30 73 0.74
31 25 0.26
ACGTcount: A:0.41, C:0.15, G:0.09, T:0.35
Consensus pattern (30 bp):
CAAATCAATTCGGCAATGTATATCTATATA
Found at i:26061654 original size:89 final size:89
Alignment explanation
Indices: 26061503--26061695 Score: 323
Period size: 89 Copynumber: 2.2 Consensus size: 89
26061493 TACAAACTAC
* * *
26061503 GCCATGAAGGCGTACTTACTTTCGGAGGTGGCTGTAGAAATATTTCCTTTGACATAGATAGCCAC
1 GCCATAAAGGCGTCCTTACTTTCGGAGATGGCTGTAGAAATATTTCCTTTGACATAGATAGCCAC
26061568 AGAGGCATCCTTGAAAAATAGATA
66 AGAGGCATCCTTGAAAAATAGATA
* *
26061592 GCCATAAAGGCGTCCTTACTTTCGGAGATGGTTGTAGAAATCTTTCCTTTGACATAGATAGCCAC
1 GCCATAAAGGCGTCCTTACTTTCGGAGATGGCTGTAGAAATATTTCCTTTGACATAGATAGCCAC
*
26061657 AGAGGCATCCTTGAACAATAGATA
66 AGAGGCATCCTTGAAAAATAGATA
*
26061681 GCCATCAAGGCGTCC
1 GCCATAAAGGCGTCC
26061696 ATAAGTAAAG
Statistics
Matches: 97, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
89 97 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (89 bp):
GCCATAAAGGCGTCCTTACTTTCGGAGATGGCTGTAGAAATATTTCCTTTGACATAGATAGCCAC
AGAGGCATCCTTGAAAAATAGATA
Found at i:26061718 original size:28 final size:28
Alignment explanation
Indices: 26061647--26061744 Score: 110
Period size: 28 Copynumber: 3.5 Consensus size: 28
26061637 CCTTTGACAT
* *
26061647 AGATAGCCACAGAGGCATCCTTGAA-CAA
1 AGATAGCCACAAAGGCATCCAT-AAGCAA
* *
26061675 TAGATAGCCATC-AAGGCGTCCATAAGTAA
1 -AGATAGCCA-CAAAGGCATCCATAAGCAA
*
26061704 AGATAGCCACAAAGGCATCCATGAGCAA
1 AGATAGCCACAAAGGCATCCATAAGCAA
26061732 AGATAGCCACAAA
1 AGATAGCCACAAA
26061745 TTTGTCCATT
Statistics
Matches: 59, Mismatches: 7, Indels: 7
0.81 0.10 0.10
Matches are distributed among these distances:
27 1 0.02
28 38 0.64
29 19 0.32
30 1 0.02
ACGTcount: A:0.42, C:0.23, G:0.20, T:0.14
Consensus pattern (28 bp):
AGATAGCCACAAAGGCATCCATAAGCAA
Found at i:26061858 original size:29 final size:29
Alignment explanation
Indices: 26061826--26061971 Score: 186
Period size: 29 Copynumber: 5.1 Consensus size: 29
26061816 CCACAAATTT
* *
26061826 TCTCTTATAACAAAATCAGCCACAAAGGC
1 TCTCATATAACAGAATCAGCCACAAAGGC
* * *
26061855 TCTCATATAACAGATTTAGCCATAAAGGC
1 TCTCATATAACAGAATCAGCCACAAAGGC
* * *
26061884 TCTTATATAATAGAATTAGCCAC-AAGGC
1 TCTCATATAACAGAATCAGCCACAAAGGC
26061912 TCTCATATAACAGAATCAGCCACAAAGGC
1 TCTCATATAACAGAATCAGCCACAAAGGC
* * *
26061941 TCTCATAAAATAGAATCAGCCACAAAAGC
1 TCTCATATAACAGAATCAGCCACAAAGGC
26061970 TC
1 TC
26061972 CTTTTCGGTA
Statistics
Matches: 101, Mismatches: 15, Indels: 2
0.86 0.13 0.02
Matches are distributed among these distances:
28 25 0.25
29 76 0.75
ACGTcount: A:0.41, C:0.24, G:0.12, T:0.23
Consensus pattern (29 bp):
TCTCATATAACAGAATCAGCCACAAAGGC
Found at i:26061924 original size:57 final size:57
Alignment explanation
Indices: 26061839--26061965 Score: 191
Period size: 57 Copynumber: 2.2 Consensus size: 57
26061829 CTTATAACAA
* * * * *
26061839 AATCAGCCACAAAGGCTCTCATATAACAGATTTAGCCATAAAGGCTCTTATATAATAG
1 AATCAGCCAC-AAGGCTCTCATATAACAGAATCAGCCACAAAGGCTCTCATAAAATAG
*
26061897 AATTAGCCACAAGGCTCTCATATAACAGAATCAGCCACAAAGGCTCTCATAAAATAG
1 AATCAGCCACAAGGCTCTCATATAACAGAATCAGCCACAAAGGCTCTCATAAAATAG
26061954 AATCAGCCACAA
1 AATCAGCCACAA
26061966 AAGCTCCTTT
Statistics
Matches: 62, Mismatches: 7, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
57 53 0.85
58 9 0.15
ACGTcount: A:0.42, C:0.24, G:0.13, T:0.21
Consensus pattern (57 bp):
AATCAGCCACAAGGCTCTCATATAACAGAATCAGCCACAAAGGCTCTCATAAAATAG
Found at i:26063954 original size:18 final size:18
Alignment explanation
Indices: 26063931--26063965 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
26063921 TACAGGCGCA
26063931 TTCAGATAGTTCTTATCC
1 TTCAGATAGTTCTTATCC
26063949 TTCAGATAGTTCTTATC
1 TTCAGATAGTTCTTATC
26063966 TTTTAGACTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.23, C:0.20, G:0.11, T:0.46
Consensus pattern (18 bp):
TTCAGATAGTTCTTATCC
Found at i:26064224 original size:85 final size:85
Alignment explanation
Indices: 26064078--26064233 Score: 249
Period size: 85 Copynumber: 1.8 Consensus size: 85
26064068 AGATTTGATT
* * * *
26064078 ATGAACCAAGTGGCAATTTTTTTAATCTACAAATATGTTCTGCACTCACAACAAGTTGCAGTAAC
1 ATGAACCAAGTGACAATATGTTTAATCTACAAATATGTTCTGCACTCACAACAAGTGGCAGTAAC
*
26064143 TGCAAATATGTGGTTCGATC
66 AGCAAATATGTGGTTCGATC
* *
26064163 ATGAACCAAGTGACAGTATGTTTAATCTACAAATATGTTTTGCACTCACAACAAGTGGCAGTAAC
1 ATGAACCAAGTGACAATATGTTTAATCTACAAATATGTTCTGCACTCACAACAAGTGGCAGTAAC
26064228 AGCAAA
66 AGCAAA
26064234 ACAGTAGTGG
Statistics
Matches: 64, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
85 64 1.00
ACGTcount: A:0.36, C:0.19, G:0.17, T:0.29
Consensus pattern (85 bp):
ATGAACCAAGTGACAATATGTTTAATCTACAAATATGTTCTGCACTCACAACAAGTGGCAGTAAC
AGCAAATATGTGGTTCGATC
Found at i:26064750 original size:15 final size:14
Alignment explanation
Indices: 26064710--26064751 Score: 57
Period size: 15 Copynumber: 2.9 Consensus size: 14
26064700 TCTATATAAA
*
26064710 TATTTTAGATTTAT
1 TATTTGAGATTTAT
26064724 TATTTGATGATTTAT
1 TATTTGA-GATTTAT
26064739 TATTTAGAGATTT
1 TATTT-GAGATTT
26064752 TATGGATTTA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
14 6 0.24
15 17 0.68
16 2 0.08
ACGTcount: A:0.29, C:0.00, G:0.12, T:0.60
Consensus pattern (14 bp):
TATTTGAGATTTAT
Found at i:26067815 original size:43 final size:43
Alignment explanation
Indices: 26067754--26067855 Score: 195
Period size: 43 Copynumber: 2.4 Consensus size: 43
26067744 CTTTAGAAAT
*
26067754 AAACGCCGCTATAGATTAGGACCTTTAGCGGCGCTTTTTCCAC
1 AAACGCCGCTATAGATTAGGACCTTTAGCGGCGCTTTTCCCAC
26067797 AAACGCCGCTATAGATTAGGACCTTTAGCGGCGCTTTTCCCAC
1 AAACGCCGCTATAGATTAGGACCTTTAGCGGCGCTTTTCCCAC
26067840 AAACGCCGCTATAGAT
1 AAACGCCGCTATAGAT
26067856 CAAGACGAAA
Statistics
Matches: 58, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
43 58 1.00
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.25
Consensus pattern (43 bp):
AAACGCCGCTATAGATTAGGACCTTTAGCGGCGCTTTTCCCAC
Found at i:26067892 original size:69 final size:68
Alignment explanation
Indices: 26067800--26067929 Score: 215
Period size: 69 Copynumber: 1.9 Consensus size: 68
26067790 TTTCCACAAA
* *
26067800 CGCCGCTATAGATTAGGACCTTTAGCGGCGCTTTTCCCACAAACGCCGCTATAGATCAAGACGAA
1 CGCCGCTATAGATCAGGACCTTTAGCAGCGCTTTT-CCACAAACGCCGCTATAGATCAAGACGAA
26067865 AAAG
65 AAAG
* *
26067869 CGCCGCTATAGATCAGGATCTTTAGCAGCGCTTTTGCACAAACGCCGCTATAGATCAAGAC
1 CGCCGCTATAGATCAGGACCTTTAGCAGCGCTTTTCCACAAACGCCGCTATAGATCAAGAC
26067930 CTTTAGCGAC
Statistics
Matches: 57, Mismatches: 4, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
68 25 0.44
69 32 0.56
ACGTcount: A:0.29, C:0.28, G:0.22, T:0.22
Consensus pattern (68 bp):
CGCCGCTATAGATCAGGACCTTTAGCAGCGCTTTTCCACAAACGCCGCTATAGATCAAGACGAAA
AAG
Found at i:26067931 original size:111 final size:112
Alignment explanation
Indices: 26067757--26067971 Score: 342
Period size: 111 Copynumber: 1.9 Consensus size: 112
26067747 TAGAAATAAA
* * * *
26067757 CGCCGCTATAGATTAGGACCTTTAGCGGCGCTTTTTCCACAAACGCCGCTATAGATTAGGACCTT
1 CGCCGCTATAGATCAGGACCTTTAGCAGCGCTTTTTCCACAAACGCCGCTATAGATCAAGACCTT
*
26067822 TAGCGGCGCTTTTCCCACAAACGCCGCTATAGATCAAGACGAAAAAG
66 TAGCGACGCTTTTCCCACAAACGCCGCTATAGATCAAGACGAAAAAG
* *
26067869 CGCCGCTATAGATCAGGATCTTTAGCAGCGC-TTTTGCACAAACGCCGCTATAGATCAAGACCTT
1 CGCCGCTATAGATCAGGACCTTTAGCAGCGCTTTTTCCACAAACGCCGCTATAGATCAAGACCTT
* *
26067933 TAGCGACGCTTTTCCCACAAATGTCGCTATAGATCAAGA
66 TAGCGACGCTTTTCCCACAAACGCCGCTATAGATCAAGA
26067972 ACTTTAGCGA
Statistics
Matches: 94, Mismatches: 9, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
111 66 0.70
112 28 0.30
ACGTcount: A:0.28, C:0.27, G:0.20, T:0.24
Consensus pattern (112 bp):
CGCCGCTATAGATCAGGACCTTTAGCAGCGCTTTTTCCACAAACGCCGCTATAGATCAAGACCTT
TAGCGACGCTTTTCCCACAAACGCCGCTATAGATCAAGACGAAAAAG
Found at i:26067966 original size:43 final size:43
Alignment explanation
Indices: 26067869--26068028 Score: 200
Period size: 43 Copynumber: 3.8 Consensus size: 43
26067859 GACGAAAAAG
* * *
26067869 CGCCGCTATAGATCAGGATCTTTAGC-AGCGCTTTT-GCACAAA
1 CGCCGCTATAGATCAAGACCTTTAGCGA-CGCTTTTCCCACAAA
26067911 CGCCGCTATAGATCAAGACCTTTAGCGACGCTTTTCCCACAAA
1 CGCCGCTATAGATCAAGACCTTTAGCGACGCTTTTCCCACAAA
* * * * * *
26067954 TGTCGCTATAGATCAAGAACTTTAGCGATGTTTTTCCCAAAAA
1 CGCCGCTATAGATCAAGACCTTTAGCGACGCTTTTCCCACAAA
*
26067997 CGCCGCTATAGAACAA-ACCTTTAGCGACGCTT
1 CGCCGCTATAGATCAAGACCTTTAGCGACGCTT
26068029 CTCGCAAAAA
Statistics
Matches: 101, Mismatches: 15, Indels: 4
0.84 0.12 0.03
Matches are distributed among these distances:
42 44 0.44
43 57 0.56
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.26
Consensus pattern (43 bp):
CGCCGCTATAGATCAAGACCTTTAGCGACGCTTTTCCCACAAA
Found at i:26068039 original size:43 final size:43
Alignment explanation
Indices: 26067863--26068043 Score: 197
Period size: 43 Copynumber: 4.2 Consensus size: 43
26067853 GATCAAGACG
* * *
26067863 AAAAAGCGCCGCTATAGATCAGGATCTTTAGC-AGCGCTTTT-GC
1 AAAAA-CGCCGCTATAGATCAAGACCTTTAGCGA-CGCTTTTCCC
*
26067906 ACAAACGCCGCTATAGATCAAGACCTTTAGCGACGCTTTTCCC
1 AAAAACGCCGCTATAGATCAAGACCTTTAGCGACGCTTTTCCC
* * * * * *
26067949 ACAAATGTCGCTATAGATCAAGAACTTTAGCGATGTTTTTCCC
1 AAAAACGCCGCTATAGATCAAGACCTTTAGCGACGCTTTTCCC
* * *
26067992 AAAAACGCCGCTATAGAACAA-ACCTTTAGCGACGCTTCTCGCA
1 AAAAACGCCGCTATAGATCAAGACCTTTAGCGACGCTTTTC-CC
26068035 AAAAACGCC
1 AAAAACGCC
26068044 ACTAAAAACA
Statistics
Matches: 117, Mismatches: 18, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
42 46 0.39
43 71 0.61
ACGTcount: A:0.31, C:0.27, G:0.18, T:0.24
Consensus pattern (43 bp):
AAAAACGCCGCTATAGATCAAGACCTTTAGCGACGCTTTTCCC
Found at i:26071797 original size:7 final size:7
Alignment explanation
Indices: 26071785--26071902 Score: 69
Period size: 7 Copynumber: 16.7 Consensus size: 7
26071775 CTAATTAATT
26071785 TAAACCC
1 TAAACCC
26071792 TAAACCC
1 TAAACCC
26071799 T-AACTCC
1 TAAAC-CC
*
26071806 TAAACAC
1 TAAACCC
*
26071813 TAAAGCC
1 TAAACCC
*
26071820 TAAATCCT
1 TAAA-CCC
*
26071828 TAACCCC
1 TAAACCC
*
26071835 TAACCCC
1 TAAACCC
*
26071842 TAAACCT
1 TAAACCC
*
26071849 TGAACCC
1 TAAACCC
26071856 T-AACCC
1 TAAACCC
***
26071862 TTAAATTG
1 -TAAACCC
*
26071870 TAAACCA
1 TAAACCC
*
26071877 TAAACCA
1 TAAACCC
* *
26071884 TAAATCA
1 TAAACCC
26071891 TAAACCC
1 TAAACCC
26071898 TAAAC
1 TAAAC
26071903 TCATAATCCA
Statistics
Matches: 86, Mismatches: 20, Indels: 10
0.74 0.17 0.09
Matches are distributed among these distances:
6 8 0.09
7 69 0.80
8 9 0.10
ACGTcount: A:0.42, C:0.34, G:0.03, T:0.21
Consensus pattern (7 bp):
TAAACCC
Found at i:26071923 original size:7 final size:7
Alignment explanation
Indices: 26071870--26071923 Score: 63
Period size: 7 Copynumber: 7.6 Consensus size: 7
26071860 CCTTAAATTG
26071870 TAAACCA
1 TAAACCA
26071877 TAAACCA
1 TAAACCA
*
26071884 TAAATCA
1 TAAACCA
*
26071891 TAAACCC
1 TAAACCA
26071898 TAAACTCA
1 TAAAC-CA
*
26071906 TAATCCA
1 TAAACCA
*
26071913 TAAACCT
1 TAAACCA
26071920 TAAA
1 TAAA
26071924 ATAGTATCTT
Statistics
Matches: 39, Mismatches: 7, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
7 34 0.87
8 5 0.13
ACGTcount: A:0.52, C:0.26, G:0.00, T:0.22
Consensus pattern (7 bp):
TAAACCA
Found at i:26071954 original size:14 final size:14
Alignment explanation
Indices: 26071935--26071980 Score: 58
Period size: 14 Copynumber: 3.4 Consensus size: 14
26071925 TAGTATCTTT
26071935 TAAACCTTAAACCC
1 TAAACCTTAAACCC
* *
26071949 TAAACCATATACCC
1 TAAACCTTAAACCC
*
26071963 -CAACCTTAAACCC
1 TAAACCTTAAACCC
26071976 TAAAC
1 TAAAC
26071981 TATAATGATA
Statistics
Matches: 25, Mismatches: 6, Indels: 2
0.76 0.18 0.06
Matches are distributed among these distances:
13 10 0.40
14 15 0.60
ACGTcount: A:0.43, C:0.37, G:0.00, T:0.20
Consensus pattern (14 bp):
TAAACCTTAAACCC
Found at i:26072139 original size:21 final size:21
Alignment explanation
Indices: 26072105--26072160 Score: 62
Period size: 21 Copynumber: 2.7 Consensus size: 21
26072095 TGAATCCCTA
26072105 AACCC-TAAATCCCTAAC-TCTT
1 AACCCTTAAA-CCCTAACGTC-T
* *
26072126 AACTCTTAACCCCTAACGTCT
1 AACCCTTAAACCCTAACGTCT
26072147 AACCCTTAAACCCT
1 AACCCTTAAACCCT
26072161 TAACCCCTAA
Statistics
Matches: 29, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
21 24 0.83
22 5 0.17
ACGTcount: A:0.32, C:0.39, G:0.02, T:0.27
Consensus pattern (21 bp):
AACCCTTAAACCCTAACGTCT
Found at i:26072142 original size:14 final size:14
Alignment explanation
Indices: 26072125--26072171 Score: 51
Period size: 14 Copynumber: 3.3 Consensus size: 14
26072115 CCCTAACTCT
26072125 TAACTCTTAACCCC
1 TAACTCTTAACCCC
*
26072139 TAACGTC-TAACCCT
1 TAAC-TCTTAACCCC
*
26072153 TAAACCCTTAACCCC
1 T-AACTCTTAACCCC
26072168 TAAC
1 TAAC
26072172 GATACGCCCC
Statistics
Matches: 27, Mismatches: 3, Indels: 6
0.75 0.08 0.17
Matches are distributed among these distances:
14 15 0.56
15 12 0.44
ACGTcount: A:0.32, C:0.40, G:0.02, T:0.26
Consensus pattern (14 bp):
TAACTCTTAACCCC
Found at i:26072162 original size:29 final size:28
Alignment explanation
Indices: 26072117--26072172 Score: 85
Period size: 29 Copynumber: 2.0 Consensus size: 28
26072107 CCCTAAATCC
* *
26072117 CTAACTCTTAACTCTTAACCCCTAACGT
1 CTAACCCTTAACCCTTAACCCCTAACGT
26072145 CTAACCCTTAAACCCTTAACCCCTAACG
1 CTAACCCTT-AACCCTTAACCCCTAACG
26072173 ATACGCCCCG
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
28 8 0.32
29 17 0.68
ACGTcount: A:0.30, C:0.39, G:0.04, T:0.27
Consensus pattern (28 bp):
CTAACCCTTAACCCTTAACCCCTAACGT
Found at i:26073530 original size:20 final size:20
Alignment explanation
Indices: 26073497--26073589 Score: 109
Period size: 20 Copynumber: 4.7 Consensus size: 20
26073487 GAGCTAATAA
*
26073497 TGAGCTC-AATGAGCTGAAC-
1 TGAGCTCGAGTGAGCTG-ACT
* *
26073516 TGAGCTCGTGGGAGCTGACT
1 TGAGCTCGAGTGAGCTGACT
*
26073536 TGAGCTCGAATGAGCTGACT
1 TGAGCTCGAGTGAGCTGACT
* *
26073556 TGAGCTCAAGTGAGCTGAAT
1 TGAGCTCGAGTGAGCTGACT
26073576 TGAGCTCGAGTGAG
1 TGAGCTCGAGTGAG
26073590 TTGAACCGCA
Statistics
Matches: 62, Mismatches: 10, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
19 9 0.15
20 53 0.85
ACGTcount: A:0.25, C:0.18, G:0.33, T:0.24
Consensus pattern (20 bp):
TGAGCTCGAGTGAGCTGACT
Found at i:26073548 original size:40 final size:41
Alignment explanation
Indices: 26073497--26073595 Score: 123
Period size: 40 Copynumber: 2.5 Consensus size: 41
26073487 GAGCTAATAA
** *
26073497 TGAGCTC-AATGAGCTGAAC-TGAGCTCGTGGGAGCTGACT
1 TGAGCTCGAATGAGCTGAACTTGAGCTCAAGGGAGCTGAAT
*
26073536 TGAGCTCGAATGAGCTG-ACTTGAGCTCAAGTGAGCTGAAT
1 TGAGCTCGAATGAGCTGAACTTGAGCTCAAGGGAGCTGAAT
* *
26073576 TGAGCTCGAGTGAGTTGAAC
1 TGAGCTCGAATGAGCTGAAC
26073596 CGCATGGAAA
Statistics
Matches: 51, Mismatches: 6, Indels: 4
0.84 0.10 0.07
Matches are distributed among these distances:
39 9 0.18
40 40 0.78
41 2 0.04
ACGTcount: A:0.25, C:0.18, G:0.32, T:0.24
Consensus pattern (41 bp):
TGAGCTCGAATGAGCTGAACTTGAGCTCAAGGGAGCTGAAT
Found at i:26075306 original size:15 final size:15
Alignment explanation
Indices: 26075271--26075309 Score: 51
Period size: 15 Copynumber: 2.6 Consensus size: 15
26075261 ACTCGACAGG
26075271 CTCTCTTTCTTTTCC
1 CTCTCTTTCTTTTCC
* *
26075286 CACTCTTTCTTTTTC
1 CTCTCTTTCTTTTCC
*
26075301 TTCTCTTTC
1 CTCTCTTTC
26075310 AATTTCTTTT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.03, C:0.36, G:0.00, T:0.62
Consensus pattern (15 bp):
CTCTCTTTCTTTTCC
Found at i:26075366 original size:18 final size:18
Alignment explanation
Indices: 26075345--26075402 Score: 89
Period size: 18 Copynumber: 3.2 Consensus size: 18
26075335 TTTTCACTCA
*
26075345 CTTTTTCAATTTCCTTTT
1 CTTTTTCAATTTCTTTTT
*
26075363 CTTTTGCAATTTCTTTTT
1 CTTTTTCAATTTCTTTTT
*
26075381 CTTTTTCAATGTCTTTTT
1 CTTTTTCAATTTCTTTTT
26075399 CTTT
1 CTTT
26075403 CATTTCTCCA
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 36 1.00
ACGTcount: A:0.10, C:0.19, G:0.03, T:0.67
Consensus pattern (18 bp):
CTTTTTCAATTTCTTTTT
Found at i:26075379 original size:30 final size:28
Alignment explanation
Indices: 26075301--26075381 Score: 81
Period size: 30 Copynumber: 2.7 Consensus size: 28
26075291 TTTCTTTTTC
26075301 TTCTCTTTCAATTTCTTTTTCAATCTCTT
1 TTCT-TTTCAATTTCTTTTTCAATCTCTT
* ** *
26075330 TTGCCTTTTCACTCACTTTTTCAATTTCCTT
1 TT--CTTTTCAATTTCTTTTTCAATCT-CTT
26075361 TTCTTTTGCAATTTCTTTTTC
1 TTCTTTT-CAATTTCTTTTTC
26075382 TTTTTCAATG
Statistics
Matches: 41, Mismatches: 7, Indels: 7
0.75 0.13 0.13
Matches are distributed among these distances:
29 7 0.17
30 27 0.66
31 7 0.17
ACGTcount: A:0.12, C:0.25, G:0.02, T:0.60
Consensus pattern (28 bp):
TTCTTTTCAATTTCTTTTTCAATCTCTT
Found at i:26075441 original size:42 final size:40
Alignment explanation
Indices: 26075379--26075501 Score: 102
Period size: 36 Copynumber: 3.2 Consensus size: 40
26075369 CAATTTCTTT
* *
26075379 TTCTTTTTCAA-TGTCTTTTTCTTTCATTTCTCCAAACTCACC
1 TTCTTTTTCAATTTTC-TTTTCTTTC-GTTCT-CAAACTCACC
* *
26075421 TTCTTTTTCAATTTTC---T-TTTCGTTCTCACACTCATC
1 TTCTTTTTCAATTTTCTTTTCTTTCGTTCTCAAACTCACC
* *
26075457 TTCTTTTTCAATTTTC---T-TTTCGTTCTCACACTCATC
1 TTCTTTTTCAATTTTCTTTTCTTTCGTTCTCAAACTCACC
26075493 TTCTTTTTC
1 TTCTTTTTC
26075502 TTTCATTTCT
Statistics
Matches: 76, Mismatches: 4, Indels: 8
0.86 0.05 0.09
Matches are distributed among these distances:
36 53 0.70
37 4 0.05
38 4 0.05
39 1 0.01
42 11 0.14
43 3 0.04
ACGTcount: A:0.14, C:0.28, G:0.02, T:0.56
Consensus pattern (40 bp):
TTCTTTTTCAATTTTCTTTTCTTTCGTTCTCAAACTCACC
Found at i:26075504 original size:42 final size:36
Alignment explanation
Indices: 26075414--26075501 Score: 167
Period size: 36 Copynumber: 2.4 Consensus size: 36
26075404 ATTTCTCCAA
*
26075414 ACTCACCTTCTTTTTCAATTTTCTTTTCGTTCTCAC
1 ACTCATCTTCTTTTTCAATTTTCTTTTCGTTCTCAC
26075450 ACTCATCTTCTTTTTCAATTTTCTTTTCGTTCTCAC
1 ACTCATCTTCTTTTTCAATTTTCTTTTCGTTCTCAC
26075486 ACTCATCTTCTTTTTC
1 ACTCATCTTCTTTTTC
26075502 TTTCATTTCT
Statistics
Matches: 51, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
36 51 1.00
ACGTcount: A:0.14, C:0.30, G:0.02, T:0.55
Consensus pattern (36 bp):
ACTCATCTTCTTTTTCAATTTTCTTTTCGTTCTCAC
Found at i:26076533 original size:11 final size:11
Alignment explanation
Indices: 26076514--26076560 Score: 62
Period size: 11 Copynumber: 4.4 Consensus size: 11
26076504 ATAAACTTTA
*
26076514 TTTTCTAATTT
1 TTTTTTAATTT
26076525 TTTTTTAA--T
1 TTTTTTAATTT
26076534 TTTTTTAATTT
1 TTTTTTAATTT
26076545 TTTTTTCAATTT
1 TTTTTT-AATTT
26076557 TTTT
1 TTTT
26076561 CACAATGACT
Statistics
Matches: 32, Mismatches: 1, Indels: 5
0.84 0.03 0.13
Matches are distributed among these distances:
9 9 0.28
11 14 0.44
12 9 0.28
ACGTcount: A:0.17, C:0.04, G:0.00, T:0.79
Consensus pattern (11 bp):
TTTTTTAATTT
Found at i:26076542 original size:20 final size:21
Alignment explanation
Indices: 26076514--26076560 Score: 78
Period size: 20 Copynumber: 2.3 Consensus size: 21
26076504 ATAAACTTTA
*
26076514 TTTTCTAATTTTTTTTT-AAT
1 TTTTTTAATTTTTTTTTCAAT
26076534 TTTTTTAATTTTTTTTTCAAT
1 TTTTTTAATTTTTTTTTCAAT
26076555 TTTTTT
1 TTTTTT
26076561 CACAATGACT
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
20 16 0.64
21 9 0.36
ACGTcount: A:0.17, C:0.04, G:0.00, T:0.79
Consensus pattern (21 bp):
TTTTTTAATTTTTTTTTCAAT
Found at i:26076546 original size:21 final size:20
Alignment explanation
Indices: 26076514--26076560 Score: 67
Period size: 21 Copynumber: 2.3 Consensus size: 20
26076504 ATAAACTTTA
* *
26076514 TTTTCTAATTTTTTTTTAAT
1 TTTTTTAATTTTTTTTCAAT
26076534 TTTTTTAATTTTTTTTTCAAT
1 TTTTTTAA-TTTTTTTTCAAT
26076555 TTTTTT
1 TTTTTT
26076561 CACAATGACT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
20 7 0.29
21 17 0.71
ACGTcount: A:0.17, C:0.04, G:0.00, T:0.79
Consensus pattern (20 bp):
TTTTTTAATTTTTTTTCAAT
Found at i:26076559 original size:9 final size:9
Alignment explanation
Indices: 26076524--26076548 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
26076514 TTTTCTAATT
26076524 TTTTTTTAA
1 TTTTTTTAA
26076533 TTTTTTTAA
1 TTTTTTTAA
26076542 TTTTTTT
1 TTTTTTT
26076549 TTCAATTTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.16, C:0.00, G:0.00, T:0.84
Consensus pattern (9 bp):
TTTTTTTAA
Found at i:26077990 original size:20 final size:20
Alignment explanation
Indices: 26077966--26078034 Score: 102
Period size: 20 Copynumber: 3.5 Consensus size: 20
26077956 ACGAGCTCAA
*
26077966 TGAGCTGAATTGAGCTCGTG
1 TGAGCTGAATTGAGCTCGAG
* * *
26077986 GGAGCTGACTTGAGCTCGAA
1 TGAGCTGAATTGAGCTCGAG
26078006 TGAGCTGAATTGAGCTCGAG
1 TGAGCTGAATTGAGCTCGAG
26078026 TGAGCTGAA
1 TGAGCTGAA
26078035 CCGCATGGAA
Statistics
Matches: 42, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 42 1.00
ACGTcount: A:0.25, C:0.16, G:0.35, T:0.25
Consensus pattern (20 bp):
TGAGCTGAATTGAGCTCGAG
Found at i:26078008 original size:40 final size:39
Alignment explanation
Indices: 26077958--26078033 Score: 125
Period size: 40 Copynumber: 1.9 Consensus size: 39
26077948 AGCTAATAAC
*
26077958 GAGCTCAATGAGCTGAATTGAGCTCGTGGGAGCTGACTT
1 GAGCTCAATGAGCTGAATTGAGCTCGAGGGAGCTGACTT
*
26077997 GAGCTCGAATGAGCTGAATTGAGCTCGAGTGAGCTGA
1 GAGCTC-AATGAGCTGAATTGAGCTCGAGGGAGCTGA
26078034 ACCGCATGGA
Statistics
Matches: 34, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
39 6 0.18
40 28 0.82
ACGTcount: A:0.25, C:0.17, G:0.34, T:0.24
Consensus pattern (39 bp):
GAGCTCAATGAGCTGAATTGAGCTCGAGGGAGCTGACTT
Found at i:26078668 original size:41 final size:41
Alignment explanation
Indices: 26078568--26078899 Score: 286
Period size: 41 Copynumber: 8.1 Consensus size: 41
26078558 TAAAATGTCT
*
26078568 TTAGCGGCG-CTTTCTCAAAAACGCCGCTAAAGGACCC-TAGCA
1 TTAGCGGCGCCTTT-TCAAAAACGCCGCTAAA-G-CCCACAGCA
* * *
26078610 TTAGTGGCG-CTTCTTCAAAAACGCCGCTAAAGCCAAGAGCA
1 TTAGCGGCGCCTT-TTCAAAAACGCCGCTAAAGCCCACAGCA
** *
26078651 TTAGCGGCGCCTTTTCAAAAACGCCGCTAAAGAACTCAG-A
1 TTAGCGGCGCCTTTTCAAAAACGCCGCTAAAGCCCACAGCA
* * * *
26078691 -TATGCGGCGCTTTTTCAAAAACGTCGCTAAAGCCTAGAGCA
1 TTA-GCGGCGCCTTTTCAAAAACGCCGCTAAAGCCCACAGCA
* * * *
26078732 TTAGTGGCG-CTTCTCCGAAAATGCCGCTAAAGCCC-CAAGCA
1 TTAGCGGCGCCTT-TTCAAAAACGCCGCTAAAGCCCAC-AGCA
* ** *
26078773 TTAGCGGCGCTTTTTCAAAAACGCCGCTAAAGCCCTTAACA
1 TTAGCGGCGCCTTTTCAAAAACGCCGCTAAAGCCCACAGCA
* * * * *
26078814 TTAGTGGC-ACTTTATCACAAACGTCGCTAAAGCCCCCAGCA
1 TTAGCGGCGCCTTT-TCAAAAACGCCGCTAAAGCCCACAGCA
* *
26078855 TTAGCGGCACTTTTTCAAAAACGCCGCTAAAGTCCC-CAGCA
1 TTAGCGGCGCCTTTTCAAAAACGCCGCTAAAG-CCCACAGCA
26078896 TTAG
1 TTAG
26078900 ATTTCGTTTT
Statistics
Matches: 233, Mismatches: 44, Indels: 27
0.77 0.14 0.09
Matches are distributed among these distances:
39 2 0.01
40 37 0.16
41 152 0.65
42 41 0.18
43 1 0.00
ACGTcount: A:0.30, C:0.29, G:0.20, T:0.22
Consensus pattern (41 bp):
TTAGCGGCGCCTTTTCAAAAACGCCGCTAAAGCCCACAGCA
Found at i:26078789 original size:122 final size:122
Alignment explanation
Indices: 26078571--26078804 Score: 348
Period size: 122 Copynumber: 1.9 Consensus size: 122
26078561 AATGTCTTTA
*
26078571 GCGGCGCTTTCTCAAAAACGCCGCTAAAGGACCCTAGCATTAGTGGCGCTTCTTCAAAAACGCCG
1 GCGGCGCTTTCTCAAAAACGCCGCTAAAGGA-CCTAGCATTAGTGGCGCTTCTCCAAAAACGCCG
26078636 CTAAAGCCAAGAGCATTAGCGGCGCCTTTTCAAAAACGCCGCTAAAGAACTCAGATAT
65 CTAAAGCCAAGAGCATTAGCGGCGCCTTTTCAAAAACGCCGCTAAAGAACTCAGATAT
* * * *
26078694 GCGGCGCTTTTTCAAAAACGTCGCTAAA-G-CCTAGAGCATTAGTGGCGCTTCTCCGAAAATGCC
1 GCGGCGCTTTCTCAAAAACGCCGCTAAAGGACCT--AGCATTAGTGGCGCTTCTCCAAAAACGCC
* *
26078757 GCTAAAGCCCCA-AGCATTAGCGGCGCTTTTTCAAAAACGCCGCTAAAG
64 GCTAAAG-CCAAGAGCATTAGCGGCGCCTTTTCAAAAACGCCGCTAAAG
26078805 CCCTTAACAT
Statistics
Matches: 101, Mismatches: 7, Indels: 7
0.88 0.06 0.06
Matches are distributed among these distances:
120 3 0.03
122 69 0.68
123 29 0.29
ACGTcount: A:0.29, C:0.28, G:0.22, T:0.21
Consensus pattern (122 bp):
GCGGCGCTTTCTCAAAAACGCCGCTAAAGGACCTAGCATTAGTGGCGCTTCTCCAAAAACGCCGC
TAAAGCCAAGAGCATTAGCGGCGCCTTTTCAAAAACGCCGCTAAAGAACTCAGATAT
Found at i:26078899 original size:82 final size:82
Alignment explanation
Indices: 26078568--26078886 Score: 369
Period size: 82 Copynumber: 3.9 Consensus size: 82
26078558 TAAAATGTCT
* * *
26078568 TTAGCGGCGCTTTCTCAAAAACGCCGCTAAAGGACCCTAGCATTAGTGGCGCTTCTTCAAAAACG
1 TTAGCGGCGCTTTCTCAAAAACGCCGCTAAA-GACCCCAGCATTAGCGGCGCTTTTTCAAAAACG
26078633 CCGCTAAAGCCAAGAGCA
65 CCGCTAAAGCCAAGAGCA
* *
26078651 TTAGCGGCGCCTTT-TCAAAAACGCCGCTAAAGAACTCAG-A-TATGCGGCGCTTTTTCAAAAAC
1 TTAGCGGCG-CTTTCTCAAAAACGCCGCTAAAGACCCCAGCATTA-GCGGCGCTTTTTCAAAAAC
* *
26078713 GTCGCTAAAGCCTAGAGCA
64 GCCGCTAAAGCCAAGAGCA
* * *
26078732 TTAGTGGCGC-TTCTCCGAAAATGCCGCTAAAG-CCCCAAGCATTAGCGGCGCTTTTTCAAAAAC
1 TTAGCGGCGCTTTCT-CAAAAACGCCGCTAAAGACCCC-AGCATTAGCGGCGCTTTTTCAAAAAC
*** *
26078795 GCCGCTAAAGCCCTTAACA
64 GCCGCTAAAGCCAAGAGCA
* * * * * * *
26078814 TTAGTGGCACTTTATCACAAACGTCGCTAAAGCCCCCAGCATTAGCGGCACTTTTTCAAAAACGC
1 TTAGCGGCGCTTTCTCAAAAACGCCGCTAAAGACCCCAGCATTAGCGGCGCTTTTTCAAAAACGC
26078879 CGCTAAAG
66 CGCTAAAG
26078887 TCCCCAGCAT
Statistics
Matches: 203, Mismatches: 24, Indels: 19
0.83 0.10 0.08
Matches are distributed among these distances:
79 2 0.01
80 6 0.03
81 60 0.30
82 96 0.47
83 35 0.17
84 4 0.02
ACGTcount: A:0.30, C:0.29, G:0.20, T:0.22
Consensus pattern (82 bp):
TTAGCGGCGCTTTCTCAAAAACGCCGCTAAAGACCCCAGCATTAGCGGCGCTTTTTCAAAAACGC
CGCTAAAGCCAAGAGCA
Found at i:26078910 original size:123 final size:121
Alignment explanation
Indices: 26078568--26078899 Score: 387
Period size: 123 Copynumber: 2.7 Consensus size: 121
26078558 TAAAATGTCT
* * * *
26078568 TTAGCGGCGCTTTCTCAAAAACGCCGCTAAAGGACCCTAGCATTAGTGGCGCTTCTTCAAAAACG
1 TTAGCGGCGCTTTATCAAAAACGTCGCTAAA-GCCCCCAGCATTAGTGGCGCTTCTTCAAAAACG
** * * *
26078633 CCGCTAAAGCCAAGAGCATTAGCGGCGCCTTTTCAAAAACGCCGCTAAAGAACTCAGA
65 CCGCTAAAGCC-CCAGCATTAGCGGCGCTTTTTCAAAAACGCCGCTAAAGAACTAACA
* *** * * *
26078691 -TATGCGGCGCTTTTTCAAAAACGTCGCTAAAGCCTAGAGCATTAGTGGCGCTTCTCCGAAAATG
1 TTA-GCGGCGCTTTATCAAAAACGTCGCTAAAGCCCCCAGCATTAGTGGCGCTTCTTCAAAAACG
**
26078755 CCGCTAAAGCCCCAAGCATTAGCGGCGCTTTTTCAAAAACGCCGCTAAAGCCCTTAACA
65 CCGCTAAAGCCCC-AGCATTAGCGGCGCTTTTTCAAAAACGCCGCTAAAGAAC-TAACA
* * * * * *
26078814 TTAGTGGCACTTTATCACAAACGTCGCTAAAGCCCCCAGCATTAGCGGCACTTTTTCAAAAACGC
1 TTAGCGGCGCTTTATCAAAAACGTCGCTAAAGCCCCCAGCATTAGTGGCGCTTCTTCAAAAACGC
26078879 CGCTAAAGTCCCCAGCATTAG
66 CGCTAAAG-CCCCAGCATTAG
26078900 ATTTCGTTTT
Statistics
Matches: 175, Mismatches: 29, Indels: 10
0.82 0.14 0.05
Matches are distributed among these distances:
122 75 0.43
123 94 0.54
124 6 0.03
ACGTcount: A:0.30, C:0.29, G:0.20, T:0.22
Consensus pattern (121 bp):
TTAGCGGCGCTTTATCAAAAACGTCGCTAAAGCCCCCAGCATTAGTGGCGCTTCTTCAAAAACGC
CGCTAAAGCCCCAGCATTAGCGGCGCTTTTTCAAAAACGCCGCTAAAGAACTAACA
Found at i:26080209 original size:29 final size:31
Alignment explanation
Indices: 26080177--26080235 Score: 77
Period size: 32 Copynumber: 1.9 Consensus size: 31
26080167 TAATTTTTTT
26080177 AAAGTT-ATGGTA-AAAAATATTATAATAAA
1 AAAGTTAATGGTATAAAAATATTATAATAAA
* *
26080206 AAAGTTACATGTTATAAAAGTATTATAATA
1 AAAGTTA-ATGGTATAAAAATATTATAATA
26080236 TATTTATTTA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
29 6 0.24
31 5 0.20
32 14 0.56
ACGTcount: A:0.54, C:0.02, G:0.10, T:0.34
Consensus pattern (31 bp):
AAAGTTAATGGTATAAAAATATTATAATAAA
Found at i:26082729 original size:19 final size:20
Alignment explanation
Indices: 26082702--26082751 Score: 68
Period size: 19 Copynumber: 2.5 Consensus size: 20
26082692 AATATAGAAA
*
26082702 ATTTGGAATTTTT-ATAAA-T
1 ATTTTGAATTTTTGA-AAATT
26082721 ATTTTGAATTTTTGAAAATT
1 ATTTTGAATTTTTGAAAATT
26082741 ATTTTGAATTT
1 ATTTTGAATTT
26082752 CTTTTGCAAT
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
19 15 0.54
20 13 0.46
ACGTcount: A:0.34, C:0.00, G:0.10, T:0.56
Consensus pattern (20 bp):
ATTTTGAATTTTTGAAAATT
Found at i:26088841 original size:29 final size:29
Alignment explanation
Indices: 26088798--26089039 Score: 256
Period size: 29 Copynumber: 8.3 Consensus size: 29
26088788 GTGTGCTAAA
*
26088798 CGATGGTCGTAACCATCCCTTTTCATATT
1 CGATGGTCGTCACCATCCCTTTTCATATT
*
26088827 CGATGGTCGTTACCATCCCTTTTCATATT
1 CGATGGTCGTCACCATCCCTTTTCATATT
* * * *
26088856 CAATGTTCG-GAGCCATCCCTTTTCATCAAT
1 CGATGGTCGTCA-CCATCCCTTTTCAT-ATT
* *
26088886 CGATGATCGCCACCATCCCTTTTCATAGTT
1 CGATGGTCGTCACCATCCCTTTTCATA-TT
*
26088916 -GATGGTCGTCACCATCCCTTTTCATAGT
1 CGATGGTCGTCACCATCCCTTTTCATATT
* * ** *
26088944 CAATAGTCGAAACTATCCCTTTTCATATT
1 CGATGGTCGTCACCATCCCTTTTCATATT
* *
26088973 TGATGGTCGTCACCATCCCTTTTTATAGTT
1 CGATGGTCGTCACCATCCCTTTTCATA-TT
* *
26089003 -GATGGTTGTCACCATCCCTTTTCATAGT
1 CGATGGTCGTCACCATCCCTTTTCATATT
*
26089031 CGATAGTCG
1 CGATGGTCG
26089040 AAACTATCTA
Statistics
Matches: 176, Mismatches: 30, Indels: 14
0.80 0.14 0.06
Matches are distributed among these distances:
28 3 0.02
29 146 0.83
30 26 0.15
31 1 0.01
ACGTcount: A:0.21, C:0.27, G:0.15, T:0.37
Consensus pattern (29 bp):
CGATGGTCGTCACCATCCCTTTTCATATT
Found at i:26089054 original size:87 final size:88
Alignment explanation
Indices: 26088798--26089047 Score: 344
Period size: 87 Copynumber: 2.9 Consensus size: 88
26088788 GTGTGCTAAA
* * *
26088798 CGATGGTCGTAACCATCCCTTTTCATA-TTCGATGGTCGTTACCATCCCTTTTCATATTCAAT-G
1 CGATGGTCGTCACCATCCCTTTTCATAGTT-GATGGTCGTCACCATCCCTTTTCATAGTCAATAG
* * *
26088861 TTCGGAGCCATCCCTTTTCATCAAT
65 -TCGAAACTATCCCTTTTCATCAAT
* *
26088886 CGATGATCGCCACCATCCCTTTTCATAGTTGATGGTCGTCACCATCCCTTTTCATAGTCAATAGT
1 CGATGGTCGTCACCATCCCTTTTCATAGTTGATGGTCGTCACCATCCCTTTTCATAGTCAATAGT
*
26088951 CGAAACTATCCCTTTTCAT-ATT
66 CGAAACTATCCCTTTTCATCAAT
* * * *
26088973 TGATGGTCGTCACCATCCCTTTTTATAGTTGATGGTTGTCACCATCCCTTTTCATAGTCGATAGT
1 CGATGGTCGTCACCATCCCTTTTCATAGTTGATGGTCGTCACCATCCCTTTTCATAGTCAATAGT
26089038 CGAAACTATC
66 CGAAACTATC
26089048 TATTTTCTTT
Statistics
Matches: 145, Mismatches: 15, Indels: 5
0.88 0.09 0.03
Matches are distributed among these distances:
87 71 0.49
88 71 0.49
89 3 0.02
ACGTcount: A:0.22, C:0.27, G:0.14, T:0.37
Consensus pattern (88 bp):
CGATGGTCGTCACCATCCCTTTTCATAGTTGATGGTCGTCACCATCCCTTTTCATAGTCAATAGT
CGAAACTATCCCTTTTCATCAAT
Found at i:26091799 original size:53 final size:54
Alignment explanation
Indices: 26091685--26091810 Score: 139
Period size: 53 Copynumber: 2.3 Consensus size: 54
26091675 CTTCAAACCC
* * * **
26091685 TTTTACTTTCCCCAAAAAACTTTTACTTCCCCCCAAACCCCCAAAACTTTTTTCA
1 TTTTACTTTCTCCACAAAACTTTTACAT-CCCCCAAACCCCCAAAACAATTTTCA
* * *
26091740 TTTTACTTTCTCCTCAAAACTTTTACAT-CCCTAAACCCCCGAAAA-AATTTTCT
1 TTTTACTTTCTCCACAAAACTTTTACATCCCCCAAACCCCC-AAAACAATTTTCA
*
26091793 TTTTACTTTCTCCCCAAA
1 TTTTACTTTCTCCACAAA
26091811 CCCTTAAACA
Statistics
Matches: 61, Mismatches: 9, Indels: 4
0.82 0.12 0.05
Matches are distributed among these distances:
53 33 0.54
54 4 0.07
55 24 0.39
ACGTcount: A:0.29, C:0.33, G:0.01, T:0.37
Consensus pattern (54 bp):
TTTTACTTTCTCCACAAAACTTTTACATCCCCCAAACCCCCAAAACAATTTTCA
Found at i:26095501 original size:27 final size:27
Alignment explanation
Indices: 26095468--26095588 Score: 154
Period size: 27 Copynumber: 4.5 Consensus size: 27
26095458 TTAAGCATAC
*
26095468 AGTCATTTTATAACATAGGGGCATAAT
1 AGTCATTTTATAACATAGAGGCATAAT
*
26095495 AGTCATTTTATAACATAGAGGCATAAC
1 AGTCATTTTATAACATAGAGGCATAAT
* *
26095522 CGTTATTTTATAACATAGAGGCATAAT
1 AGTCATTTTATAACATAGAGGCATAAT
* ** *
26095549 AGTCATCTTACCACGT-GAGGGCATAAT
1 AGTCATTTTATAACATAGA-GGCATAAT
26095576 AGTCATTTTATAA
1 AGTCATTTTATAA
26095589 TAGTTTGAGG
Statistics
Matches: 79, Mismatches: 14, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
26 2 0.03
27 77 0.97
ACGTcount: A:0.36, C:0.14, G:0.17, T:0.33
Consensus pattern (27 bp):
AGTCATTTTATAACATAGAGGCATAAT
Found at i:26101447 original size:34 final size:33
Alignment explanation
Indices: 26101393--26101469 Score: 120
Period size: 34 Copynumber: 2.3 Consensus size: 33
26101383 AATAATAGTT
*
26101393 CAGT-TCAGTTGGGCCTTAGCCCATTACAGTGA
1 CAGTATCAGTTGGGCCCTAGCCCATTACAGTGA
26101425 CAGTATCAGTGTGGGCCCTAGCCCATTACAGTGA
1 CAGTATCAGT-TGGGCCCTAGCCCATTACAGTGA
*
26101459 CAGTAACAGTT
1 CAGTATCAGTT
26101470 CAGACATGCA
Statistics
Matches: 41, Mismatches: 2, Indels: 3
0.89 0.04 0.07
Matches are distributed among these distances:
32 4 0.10
33 6 0.15
34 31 0.76
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.26
Consensus pattern (33 bp):
CAGTATCAGTTGGGCCCTAGCCCATTACAGTGA
Found at i:26101774 original size:27 final size:27
Alignment explanation
Indices: 26101735--26101807 Score: 87
Period size: 27 Copynumber: 2.7 Consensus size: 27
26101725 ATAACATTAA
26101735 GCAT-ACAGTCATTTTATAACAT-AGGG
1 GCATAACAGTCATTTTATAACATGA-GG
* ** *
26101761 GCATAATAGTCATTTTACCACGTGAGG
1 GCATAACAGTCATTTTATAACATGAGG
26101788 GCATAACAGTCATTTTATAA
1 GCATAACAGTCATTTTATAA
26101808 AAGTTTAGGG
Statistics
Matches: 38, Mismatches: 7, Indels: 3
0.79 0.15 0.06
Matches are distributed among these distances:
26 4 0.11
27 33 0.87
28 1 0.03
ACGTcount: A:0.34, C:0.16, G:0.18, T:0.32
Consensus pattern (27 bp):
GCATAACAGTCATTTTATAACATGAGG
Done.