Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr08 ID=Chr08-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 57128820
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 677448 characters in sequence are not A, C, G, or T
File 89 of 190
Found at i:26106716 original size:25 final size:24
Alignment explanation
Indices: 26106673--26106742 Score: 65
Period size: 24 Copynumber: 2.9 Consensus size: 24
26106663 TAGCTCTTTA
* *
26106673 TGAGCGTCCCAATAT-TGGCTCACT
1 TGAGCTTCCTAATATATGGCTCA-T
26106697 TGAGCTTCCTAATATATGGCT-AT
1 TGAGCTTCCTAATATATGGCTCAT
*
26106720 TCGAAGCTTCCTGATA-ATGGCTC
1 T-G-AGCTTCCTAATATATGGCTC
26106743 TTCGGAGTTA
Statistics
Matches: 39, Mismatches: 3, Indels: 7
0.80 0.06 0.14
Matches are distributed among these distances:
23 2 0.05
24 21 0.54
25 16 0.41
ACGTcount: A:0.23, C:0.24, G:0.20, T:0.33
Consensus pattern (24 bp):
TGAGCTTCCTAATATATGGCTCAT
Found at i:26106746 original size:24 final size:25
Alignment explanation
Indices: 26106699--26106746 Score: 71
Period size: 25 Copynumber: 2.0 Consensus size: 25
26106689 GGCTCACTTG
26106699 AGCTTCCTAATATATGGCTATTCGA
1 AGCTTCCTAATATATGGCTATTCGA
* *
26106724 AGCTTCCTGATA-ATGGCTCTTCG
1 AGCTTCCTAATATATGGCTATTCG
26106747 GAGTTACCTG
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 10 0.48
25 11 0.52
ACGTcount: A:0.23, C:0.23, G:0.19, T:0.35
Consensus pattern (25 bp):
AGCTTCCTAATATATGGCTATTCGA
Found at i:26106852 original size:25 final size:25
Alignment explanation
Indices: 26106817--26106885 Score: 120
Period size: 25 Copynumber: 2.8 Consensus size: 25
26106807 AGCCCAGATA
26106817 AGCTTCCTGTTACATGGCTCACATG
1 AGCTTCCTGTTACATGGCTCACATG
*
26106842 AGCTTCTTGTTACATGGCTCACATG
1 AGCTTCCTGTTACATGGCTCACATG
*
26106867 AGCTTCCTGTTATATGGCT
1 AGCTTCCTGTTACATGGCT
26106886 TGAGAGAGTG
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 41 1.00
ACGTcount: A:0.19, C:0.25, G:0.20, T:0.36
Consensus pattern (25 bp):
AGCTTCCTGTTACATGGCTCACATG
Found at i:26114316 original size:23 final size:23
Alignment explanation
Indices: 26114290--26114334 Score: 72
Period size: 23 Copynumber: 2.0 Consensus size: 23
26114280 GAAAATTCTG
* *
26114290 CCAGTAATAATGCAGATGAGCTA
1 CCAGTAAAAATGCAGACGAGCTA
26114313 CCAGTAAAAATGCAGACGAGCT
1 CCAGTAAAAATGCAGACGAGCT
26114335 GCCATCAACC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.40, C:0.20, G:0.22, T:0.18
Consensus pattern (23 bp):
CCAGTAAAAATGCAGACGAGCTA
Found at i:26124121 original size:23 final size:23
Alignment explanation
Indices: 26124091--26124145 Score: 92
Period size: 23 Copynumber: 2.4 Consensus size: 23
26124081 TCTAAAGTTT
*
26124091 GCATATCATTCTTATTAGGGTTC
1 GCATATCATTCTTAGTAGGGTTC
26124114 GCATATCATTCTTAGTAGGGTTC
1 GCATATCATTCTTAGTAGGGTTC
*
26124137 GCAAATCAT
1 GCATATCAT
26124146 ACCAAGAAGG
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
23 30 1.00
ACGTcount: A:0.25, C:0.18, G:0.18, T:0.38
Consensus pattern (23 bp):
GCATATCATTCTTAGTAGGGTTC
Found at i:26124156 original size:23 final size:23
Alignment explanation
Indices: 26124107--26124158 Score: 59
Period size: 23 Copynumber: 2.3 Consensus size: 23
26124097 CATTCTTATT
* * ** *
26124107 AGGGTTCGCATATCATTCTTAGT
1 AGGGTTCGCAAATCATACCAAGA
26124130 AGGGTTCGCAAATCATACCAAGA
1 AGGGTTCGCAAATCATACCAAGA
26124153 AGGGTT
1 AGGGTT
26124159 TGTATTTCAT
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.29, C:0.17, G:0.25, T:0.29
Consensus pattern (23 bp):
AGGGTTCGCAAATCATACCAAGA
Found at i:26139142 original size:21 final size:20
Alignment explanation
Indices: 26139094--26139136 Score: 86
Period size: 20 Copynumber: 2.1 Consensus size: 20
26139084 TCGGACAATG
26139094 TTTACCCACTCAAATGAATT
1 TTTACCCACTCAAATGAATT
26139114 TTTACCCACTCAAATGAATT
1 TTTACCCACTCAAATGAATT
26139134 TTT
1 TTT
26139137 TCCCCAAAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.33, C:0.23, G:0.05, T:0.40
Consensus pattern (20 bp):
TTTACCCACTCAAATGAATT
Found at i:26141669 original size:18 final size:18
Alignment explanation
Indices: 26141623--26141671 Score: 53
Period size: 18 Copynumber: 2.7 Consensus size: 18
26141613 CAGATGCAAT
*
26141623 TTCAGAAACAAATGCAGA
1 TTCAGAAACATATGCAGA
* * * *
26141641 TTTAGATACATTTGGAGA
1 TTCAGAAACATATGCAGA
26141659 TTCAGAAACATAT
1 TTCAGAAACATAT
26141672 ATAGATCCTA
Statistics
Matches: 23, Mismatches: 8, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.43, C:0.12, G:0.16, T:0.29
Consensus pattern (18 bp):
TTCAGAAACATATGCAGA
Found at i:26142235 original size:17 final size:17
Alignment explanation
Indices: 26142213--26142253 Score: 73
Period size: 17 Copynumber: 2.4 Consensus size: 17
26142203 CACGGCCTAA
*
26142213 CACACGGTCATGTGGCC
1 CACACGGTCATGCGGCC
26142230 CACACGGTCATGCGGCC
1 CACACGGTCATGCGGCC
26142247 CACACGG
1 CACACGG
26142254 CCCAACTTAC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
17 23 1.00
ACGTcount: A:0.20, C:0.39, G:0.29, T:0.12
Consensus pattern (17 bp):
CACACGGTCATGCGGCC
Found at i:26145913 original size:16 final size:16
Alignment explanation
Indices: 26145888--26145952 Score: 112
Period size: 16 Copynumber: 4.1 Consensus size: 16
26145878 TTGATTTGTT
26145888 ATTACGCCTCTATTCC
1 ATTACGCCTCTATTCC
*
26145904 ATTACTCCTCTATTCC
1 ATTACGCCTCTATTCC
*
26145920 ATTACGCTTCTATTCC
1 ATTACGCCTCTATTCC
26145936 ATTACGCCTCTATTCC
1 ATTACGCCTCTATTCC
26145952 A
1 A
26145953 ATACAGCGAA
Statistics
Matches: 45, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 45 1.00
ACGTcount: A:0.20, C:0.35, G:0.05, T:0.40
Consensus pattern (16 bp):
ATTACGCCTCTATTCC
Found at i:26150972 original size:22 final size:21
Alignment explanation
Indices: 26150939--26150980 Score: 59
Period size: 20 Copynumber: 2.0 Consensus size: 21
26150929 TCCAATTACA
26150939 CATATAATCACAAAATATTCAAG
1 CATATAATCAC--AATATTCAAG
26150962 CATAT-ATCACAATATTCAA
1 CATATAATCACAATATTCAA
26150981 AACATCTTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 9 0.47
22 5 0.26
23 5 0.26
ACGTcount: A:0.50, C:0.19, G:0.02, T:0.29
Consensus pattern (21 bp):
CATATAATCACAATATTCAAG
Found at i:26155303 original size:27 final size:27
Alignment explanation
Indices: 26155265--26155338 Score: 121
Period size: 27 Copynumber: 2.7 Consensus size: 27
26155255 GGTGACCCCA
26155265 TTCGCCAGGCCTACTAGCGATCCTTAC
1 TTCGCCAGGCCTACTAGCGATCCTTAC
26155292 TTCGCCAGGCCTACTAGCGATCCTTAC
1 TTCGCCAGGCCTACTAGCGATCCTTAC
* * *
26155319 TTAGCCAAGCCTACTGGCGA
1 TTCGCCAGGCCTACTAGCGA
26155339 ACACCAACTT
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
27 44 1.00
ACGTcount: A:0.20, C:0.35, G:0.20, T:0.24
Consensus pattern (27 bp):
TTCGCCAGGCCTACTAGCGATCCTTAC
Found at i:26162708 original size:30 final size:30
Alignment explanation
Indices: 26162672--26162740 Score: 120
Period size: 30 Copynumber: 2.3 Consensus size: 30
26162662 AATTGGCAAA
26162672 AAAACTCTCAAATTTCTCCTTAAATTTCTC
1 AAAACTCTCAAATTTCTCCTTAAATTTCTC
*
26162702 AAAACTCTCAAATTTTTCCTTAAATTTCTC
1 AAAACTCTCAAATTTCTCCTTAAATTTCTC
*
26162732 AAAGCTCTC
1 AAAACTCTC
26162741 TTTAATTAAT
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
30 37 1.00
ACGTcount: A:0.33, C:0.26, G:0.01, T:0.39
Consensus pattern (30 bp):
AAAACTCTCAAATTTCTCCTTAAATTTCTC
Found at i:26164136 original size:18 final size:18
Alignment explanation
Indices: 26164113--26164172 Score: 102
Period size: 18 Copynumber: 3.3 Consensus size: 18
26164103 GCCAGGTGTA
*
26164113 TATCCTAGCCCTTATATG
1 TATCCTAACCCTTATATG
26164131 TATCCTAACCCTTATATG
1 TATCCTAACCCTTATATG
26164149 TATCCTAACCCTTATATG
1 TATCCTAACCCTTATATG
*
26164167 TTTCCT
1 TATCCT
26164173 TTTCCCAGTC
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 40 1.00
ACGTcount: A:0.23, C:0.28, G:0.07, T:0.42
Consensus pattern (18 bp):
TATCCTAACCCTTATATG
Found at i:26164657 original size:58 final size:59
Alignment explanation
Indices: 26164547--26164661 Score: 153
Period size: 58 Copynumber: 2.0 Consensus size: 59
26164537 GTACAAACTT
* * ****
26164547 TTTTTATATTGTTTCATTTAATAAAATAAAAGTTGTTTTTAATATTTTAATAGTAAATTA
1 TTTTTATATTGTTTCATTTAATAAAATAAAAGTTCTTTTGAATAAGGCAATAG-AAATTA
26164607 TTTTTATATT-TTT-ATTTAATAAAATAAAAGTTCTTTTGAATAAGGCAATAGAAAT
1 TTTTTATATTGTTTCATTTAATAAAATAAAAGTTCTTTTGAATAAGGCAATAGAAAT
26164662 AATGCAACAT
Statistics
Matches: 49, Mismatches: 6, Indels: 3
0.84 0.10 0.05
Matches are distributed among these distances:
57 4 0.08
58 32 0.65
59 3 0.06
60 10 0.20
ACGTcount: A:0.40, C:0.03, G:0.08, T:0.50
Consensus pattern (59 bp):
TTTTTATATTGTTTCATTTAATAAAATAAAAGTTCTTTTGAATAAGGCAATAGAAATTA
Found at i:26168051 original size:126 final size:126
Alignment explanation
Indices: 26167836--26168097 Score: 425
Period size: 126 Copynumber: 2.1 Consensus size: 126
26167826 GAACTGCTAT
* * *
26167836 AGAAAAAGAGCGTCCACGTGGGAGATTTTTTCATCAATTTTGCTGACAGTGCATCTTTCTTGAAC
1 AGAAAAAAAGCGTCCACGTGGGAGATTTTTTCATCAATTTTGCTGACAGTGCATCCTGCTTGAAC
* *
26167901 CGTTTTTGACACTATTTGTTCAGAACCATCTTCTCAAAATTATTTTTTCAGGAACTACTGC
66 CGTTTTTGACACTATTTGTTCAGAACCATCTTCTCAAAATAATTTTTTCAAGAACTACTGC
* * *
26167962 AGAAAAAAAGTGTCCACGTGGGAGCTTTTTTCATCAATTTTGCTGACAGTGCATCCTGCTTGAAG
1 AGAAAAAAAGCGTCCACGTGGGAGATTTTTTCATCAATTTTGCTGACAGTGCATCCTGCTTGAAC
**
26168027 CGTTTTTGACACTATTTGTTCAGAACTGTCTTCTCAAAATAATTTTTTCAAGAACTACTGC
66 CGTTTTTGACACTATTTGTTCAGAACCATCTTCTCAAAATAATTTTTTCAAGAACTACTGC
26168088 AGGAAAAAAA
1 A-GAAAAAAA
26168098 TCATTATTGT
Statistics
Matches: 125, Mismatches: 10, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
126 117 0.94
127 8 0.06
ACGTcount: A:0.29, C:0.19, G:0.17, T:0.35
Consensus pattern (126 bp):
AGAAAAAAAGCGTCCACGTGGGAGATTTTTTCATCAATTTTGCTGACAGTGCATCCTGCTTGAAC
CGTTTTTGACACTATTTGTTCAGAACCATCTTCTCAAAATAATTTTTTCAAGAACTACTGC
Found at i:26168267 original size:34 final size:34
Alignment explanation
Indices: 26168153--26168277 Score: 128
Period size: 34 Copynumber: 3.7 Consensus size: 34
26168143 AAAGTTATTT
*
26168153 TTAAAAA-ACTAAACCCTAATTTAATTAATTTTC
1 TTAAAAACACTAAACCCTAATTTAATTAATTTTA
* * * * *
26168186 TTAAAAACTCTAAATCATAATTTTATTTA-TTTA
1 TTAAAAACACTAAACCCTAATTTAATTAATTTTA
* * *
26168219 TTTAAAACCCCTAAAACCTAATTTAATTAATTTTA
1 -TTAAAAACACTAAACCCTAATTTAATTAATTTTA
**
26168254 AAAAAAACACTAAACCCTAATTTA
1 TTAAAAACACTAAACCCTAATTTA
26168278 TTTTTTTAAA
Statistics
Matches: 72, Mismatches: 17, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
33 10 0.14
34 58 0.81
35 4 0.06
ACGTcount: A:0.46, C:0.15, G:0.00, T:0.38
Consensus pattern (34 bp):
TTAAAAACACTAAACCCTAATTTAATTAATTTTA
Found at i:26176379 original size:9 final size:9
Alignment explanation
Indices: 26176357--26176397 Score: 50
Period size: 9 Copynumber: 4.7 Consensus size: 9
26176347 AACAGTGCTA
26176357 AACATAACAT
1 AACAT-ACAT
26176367 -ACATACAT
1 AACATACAT
26176375 AACATACAT
1 AACATACAT
*
26176384 AATATACAT
1 AACATACAT
26176393 -ACATA
1 AACATA
26176398 AACATTAATA
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
8 8 0.29
9 20 0.71
ACGTcount: A:0.56, C:0.20, G:0.00, T:0.24
Consensus pattern (9 bp):
AACATACAT
Found at i:26176500 original size:60 final size:57
Alignment explanation
Indices: 26176380--26176502 Score: 149
Period size: 60 Copynumber: 2.1 Consensus size: 57
26176370 TACATAACAT
* *
26176380 ACATAATATACATACATAAACATTAATAAACAATCATACACATAACAATAATATACC
1 ACATAATATACATACATAAACATGAATAAACAATCATACACATAACAATAATATAAC
* * * *
26176437 ACATAATATATATACATTAAACATGACATACATAAT-ATACAACCATAACAGTAATATAAC
1 ACATAATATACATACA-TAAACATGA-ATAAACAATCATAC-A-CATAACAATAATATAAC
26176497 ACATAA
1 ACATAA
26176503 CAAACATAGA
Statistics
Matches: 56, Mismatches: 6, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
57 15 0.27
58 12 0.21
59 8 0.14
60 21 0.38
ACGTcount: A:0.55, C:0.18, G:0.02, T:0.25
Consensus pattern (57 bp):
ACATAATATACATACATAAACATGAATAAACAATCATACACATAACAATAATATAAC
Found at i:26176575 original size:25 final size:24
Alignment explanation
Indices: 26176489--26176579 Score: 71
Period size: 25 Copynumber: 3.8 Consensus size: 24
26176479 CCATAACAGT
* *
26176489 AATATA-ACACATAACAAACATAGA
1 AATATACAAACATAACAGACATA-A
* *
26176513 AATATACATAA-ATAATATACATAA
1 AATATACA-AACATAACAGACATAA
* *
26176537 CAT-TACTTAACATAACAGACATACA
1 AATATAC-AAACATAACAGACATA-A
26176562 AATATACAAACATAACAG
1 AATATACAAACATAACAG
26176580 TAAACATAGC
Statistics
Matches: 52, Mismatches: 9, Indels: 11
0.72 0.12 0.15
Matches are distributed among these distances:
23 5 0.10
24 19 0.37
25 24 0.46
26 4 0.08
ACGTcount: A:0.58, C:0.16, G:0.03, T:0.22
Consensus pattern (24 bp):
AATATACAAACATAACAGACATAA
Found at i:26176615 original size:23 final size:21
Alignment explanation
Indices: 26176583--26176679 Score: 69
Period size: 23 Copynumber: 4.7 Consensus size: 21
26176573 ATAACAGTAA
* *
26176583 ACATAGCATACATATATAATAGT
1 ACATAACATACATACA-AATA-T
26176606 ACATAACATACATACAAATAT
1 ACATAACATACATACAAATAT
* *
26176627 ACA-AACAT--A-AC-AGTAA
1 ACATAACATACATACAAATAT
* *
26176643 ACATAGCATACATATATAATAGT
1 ACATAACATACATACA-AATA-T
26176666 ACATAACATACATA
1 ACATAACATACATA
26176680 ATATACATAG
Statistics
Matches: 58, Mismatches: 9, Indels: 14
0.72 0.11 0.17
Matches are distributed among these distances:
16 6 0.10
17 6 0.10
18 1 0.02
19 1 0.02
20 6 0.10
21 4 0.07
22 7 0.12
23 27 0.47
ACGTcount: A:0.54, C:0.16, G:0.05, T:0.25
Consensus pattern (21 bp):
ACATAACATACATACAAATAT
Found at i:26176619 original size:9 final size:9
Alignment explanation
Indices: 26176518--26176688 Score: 67
Period size: 9 Copynumber: 19.0 Consensus size: 9
26176508 ATAGAAATAT
*
26176518 ACATAAATA
1 ACATACATA
*
26176527 ATATACATA
1 ACATACATA
*
26176536 ACATTACTTA
1 ACA-TACATA
*
26176546 ACATAACA-G
1 ACAT-ACATA
26176555 ACATACA-A
1 ACATACATA
*
26176563 ATATACA-A
1 ACATACATA
26176571 ACATAACAGTAA
1 ACAT-ACA-T-A
26176583 ACATAGCAT-
1 ACATA-CATA
*
26176592 ACATATATA
1 ACATACATA
*
26176601 ATAGTACATA
1 ACA-TACATA
26176611 ACATACAT-
1 ACATACATA
26176619 ACA-A-ATA
1 ACATACATA
*
26176626 TACAAACATA
1 -ACATACATA
26176636 ACAGT--A-A
1 ACA-TACATA
26176643 ACATAGCAT-
1 ACATA-CATA
*
26176652 ACATATATA
1 ACATACATA
*
26176661 ATAGTACATA
1 ACA-TACATA
26176671 ACATACATA
1 ACATACATA
*
26176680 ATATACATA
1 ACATACATA
26176689 GCAGTTTAAA
Statistics
Matches: 123, Mismatches: 19, Indels: 40
0.68 0.10 0.22
Matches are distributed among these distances:
6 3 0.02
7 5 0.04
8 24 0.20
9 55 0.45
10 27 0.22
11 2 0.02
12 7 0.06
ACGTcount: A:0.55, C:0.16, G:0.04, T:0.25
Consensus pattern (9 bp):
ACATACATA
Found at i:26176627 original size:60 final size:60
Alignment explanation
Indices: 26176546--26176679 Score: 259
Period size: 60 Copynumber: 2.2 Consensus size: 60
26176536 ACATTACTTA
*
26176546 ACATAACAGACATACAAATATACAAACATAACAGTAAACATAGCATACATATATAATAGT
1 ACATAACATACATACAAATATACAAACATAACAGTAAACATAGCATACATATATAATAGT
26176606 ACATAACATACATACAAATATACAAACATAACAGTAAACATAGCATACATATATAATAGT
1 ACATAACATACATACAAATATACAAACATAACAGTAAACATAGCATACATATATAATAGT
26176666 ACATAACATACATA
1 ACATAACATACATA
26176680 ATATACATAG
Statistics
Matches: 73, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
60 73 1.00
ACGTcount: A:0.55, C:0.17, G:0.05, T:0.22
Consensus pattern (60 bp):
ACATAACATACATACAAATATACAAACATAACAGTAAACATAGCATACATATATAATAGT
Found at i:26177632 original size:10 final size:10
Alignment explanation
Indices: 26177617--26177645 Score: 58
Period size: 10 Copynumber: 2.9 Consensus size: 10
26177607 TGTCATAATT
26177617 TTTAGTATTG
1 TTTAGTATTG
26177627 TTTAGTATTG
1 TTTAGTATTG
26177637 TTTAGTATT
1 TTTAGTATT
26177646 TTAGATGTTG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.21, C:0.00, G:0.17, T:0.62
Consensus pattern (10 bp):
TTTAGTATTG
Found at i:26177675 original size:36 final size:36
Alignment explanation
Indices: 26177634--26177707 Score: 130
Period size: 36 Copynumber: 2.1 Consensus size: 36
26177624 TTGTTTAGTA
*
26177634 TTGTTTAGTATTTTAGATGTTGTCATTGTTGAGCAG
1 TTGTTTAGTATTCTAGATGTTGTCATTGTTGAGCAG
*
26177670 TTGTTTAGTATTCTAGATGTTGTCATTGTTGAGTAG
1 TTGTTTAGTATTCTAGATGTTGTCATTGTTGAGCAG
26177706 TT
1 TT
26177708 TAAGTATTAG
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
36 36 1.00
ACGTcount: A:0.19, C:0.05, G:0.24, T:0.51
Consensus pattern (36 bp):
TTGTTTAGTATTCTAGATGTTGTCATTGTTGAGCAG
Found at i:26180189 original size:83 final size:83
Alignment explanation
Indices: 26180050--26180207 Score: 244
Period size: 83 Copynumber: 1.9 Consensus size: 83
26180040 TCGCTTGCGA
* * * *
26180050 TGAAATTAAATGTTTTGATTGGTTAGTAATGCCCGTGACCTTAATCTGACGATGGAGAGGGGTTA
1 TGAAATTAAATGTTTTGATTGGTTAGTAATGCCCGTGACCCTAATCTAACAATGGAGAGAGGTTA
26180115 GGGGTGTTACATTTAGTT
66 GGGGTGTTACATTTAGTT
* * * *
26180133 TGAAATTAAATGTTTTGATTGGTTAGTAATGCTCGTGACCCTAATTTAATAATGGAGATAGGTTA
1 TGAAATTAAATGTTTTGATTGGTTAGTAATGCCCGTGACCCTAATCTAACAATGGAGAGAGGTTA
26180198 GGGGTGTTAC
66 GGGGTGTTAC
26180208 GGCGAAATAC
Statistics
Matches: 67, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
83 67 1.00
ACGTcount: A:0.27, C:0.09, G:0.27, T:0.37
Consensus pattern (83 bp):
TGAAATTAAATGTTTTGATTGGTTAGTAATGCCCGTGACCCTAATCTAACAATGGAGAGAGGTTA
GGGGTGTTACATTTAGTT
Found at i:26182064 original size:28 final size:28
Alignment explanation
Indices: 26182025--26182203 Score: 283
Period size: 28 Copynumber: 6.4 Consensus size: 28
26182015 CTACTTAGTA
26182025 ACAGT-ACAGTGTGGGCCTTAGCCCAAT
1 ACAGTAACAGTGTGGGCCTTAGCCCAAT
26182052 ACAGTAACAGTGTGGGCCTTAGCCCAAT
1 ACAGTAACAGTGTGGGCCTTAGCCCAAT
*
26182080 ACAGTAACAGTGTGGGTCTTAGCCCAAT
1 ACAGTAACAGTGTGGGCCTTAGCCCAAT
* *
26182108 ACAG-AATCAGTGTGGGCCTTGGCCTAAT
1 ACAGTAA-CAGTGTGGGCCTTAGCCCAAT
26182136 ACAGTAACAGTGTGGGCCTTAGCCCAAT
1 ACAGTAACAGTGTGGGCCTTAGCCCAAT
26182164 ACAG-AATCAGTGTGGGCCTTAGCCCAAT
1 ACAGTAA-CAGTGTGGGCCTTAGCCCAAT
*
26182192 AAAGTAACAGTG
1 ACAGTAACAGTG
26182204 CAGTGTAATA
Statistics
Matches: 140, Mismatches: 7, Indels: 9
0.90 0.04 0.06
Matches are distributed among these distances:
27 9 0.06
28 127 0.91
29 4 0.03
ACGTcount: A:0.29, C:0.23, G:0.26, T:0.22
Consensus pattern (28 bp):
ACAGTAACAGTGTGGGCCTTAGCCCAAT
Found at i:26182383 original size:26 final size:26
Alignment explanation
Indices: 26182305--26182383 Score: 86
Period size: 26 Copynumber: 3.0 Consensus size: 26
26182295 AACACACCAA
* *
26182305 TATCGCAGCAAAGCTGCCAGTAATAA
1 TATCGCAGCAAAGCTGCCAGTAACAG
* * * *
26182331 CATCGCAACAGAGCTGCCAGTATCAG
1 TATCGCAGCAAAGCTGCCAGTAACAG
* *
26182357 TATCGCAGCAAAGTTGCCAATAACAG
1 TATCGCAGCAAAGCTGCCAGTAACAG
26182383 T
1 T
26182384 TTATGTGGCA
Statistics
Matches: 41, Mismatches: 12, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
26 41 1.00
ACGTcount: A:0.35, C:0.25, G:0.20, T:0.19
Consensus pattern (26 bp):
TATCGCAGCAAAGCTGCCAGTAACAG
Found at i:26182755 original size:54 final size:53
Alignment explanation
Indices: 26182619--26182778 Score: 232
Period size: 53 Copynumber: 3.0 Consensus size: 53
26182609 GGGTATAATA
* *
26182619 GTCATTTTACCCTATAGGGGTATTTTGGTCATTTTACCCTATGGGGGTATTTT
1 GTCATTTTACCCTATAGGGGTATTTCGGTCATTTTACCCTATGGGGGTATTTC
* *
26182672 GTCATTTTACCCTA-CGAGGGTATTTCGGTCATTCTACCCTATGGGGGTATTTC
1 GTCATTTTACCCTATAG-GGGTATTTCGGTCATTTTACCCTATGGGGGTATTTC
* **
26182725 GATCATTTTACCTTATAGGGGTATTTCGGTCATTTTACCCTATGACGGTATTTC
1 G-TCATTTTACCCTATAGGGGTATTTCGGTCATTTTACCCTATGGGGGTATTTC
26182779 AGTATAGATA
Statistics
Matches: 95, Mismatches: 9, Indels: 5
0.87 0.08 0.05
Matches are distributed among these distances:
52 1 0.01
53 48 0.51
54 45 0.47
55 1 0.01
ACGTcount: A:0.18, C:0.19, G:0.21, T:0.42
Consensus pattern (53 bp):
GTCATTTTACCCTATAGGGGTATTTCGGTCATTTTACCCTATGGGGGTATTTC
Found at i:26182774 original size:27 final size:27
Alignment explanation
Indices: 26182619--26182778 Score: 200
Period size: 27 Copynumber: 6.0 Consensus size: 27
26182609 GGGTATAATA
*
26182619 GTCATTTTACCCTAT-AGGGGTATTTTG
1 GTCATTTTACCCTATGA-GGGTATTTCG
* *
26182646 GTCATTTTACCCTATGGGGGTATTT-T
1 GTCATTTTACCCTATGAGGGTATTTCG
*
26182672 GTCATTTTACCCTACGAGGGTATTTCG
1 GTCATTTTACCCTATGAGGGTATTTCG
* *
26182699 GTCATTCTACCCTATGGGGGTATTTCG
1 GTCATTTTACCCTATGAGGGTATTTCG
* *
26182726 ATCATTTTACCTTAT-AGGGGTATTTCG
1 GTCATTTTACCCTATGA-GGGTATTTCG
*
26182753 GTCATTTTACCCTATGACGGTATTTC
1 GTCATTTTACCCTATGAGGGTATTTC
26182779 AGTATAGATA
Statistics
Matches: 114, Mismatches: 15, Indels: 8
0.83 0.11 0.06
Matches are distributed among these distances:
26 23 0.20
27 90 0.79
28 1 0.01
ACGTcount: A:0.18, C:0.19, G:0.21, T:0.42
Consensus pattern (27 bp):
GTCATTTTACCCTATGAGGGTATTTCG
Found at i:26186113 original size:6 final size:6
Alignment explanation
Indices: 26186102--26186131 Score: 60
Period size: 6 Copynumber: 5.0 Consensus size: 6
26186092 TGATTGAATG
26186102 ATATGT ATATGT ATATGT ATATGT ATATGT
1 ATATGT ATATGT ATATGT ATATGT ATATGT
26186132 TATTACAGGG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.33, C:0.00, G:0.17, T:0.50
Consensus pattern (6 bp):
ATATGT
Found at i:26188811 original size:21 final size:20
Alignment explanation
Indices: 26188767--26188812 Score: 56
Period size: 21 Copynumber: 2.2 Consensus size: 20
26188757 CAGAGGCATA
* *
26188767 GATACCTTTTATAAGGTATT
1 GATACCTTTTATAAAGTATC
*
26188787 GATACCTTTTGTTAAAGTATC
1 GATACCTTTT-ATAAAGTATC
26188808 GATAC
1 GATAC
26188813 TTGACCCCTG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
20 10 0.45
21 12 0.55
ACGTcount: A:0.30, C:0.13, G:0.15, T:0.41
Consensus pattern (20 bp):
GATACCTTTTATAAAGTATC
Found at i:26191785 original size:20 final size:18
Alignment explanation
Indices: 26191738--26191829 Score: 58
Period size: 17 Copynumber: 5.4 Consensus size: 18
26191728 CAAGATAAAC
26191738 ATTAAATTAA-ATTTAAT
1 ATTAAATTAATATTTAAT
26191755 ATTAAGA-TAATCACTTTAAT
1 ATTAA-ATTAAT-A-TTTAAT
*
26191775 ATTAAATTAATA--AAAT
1 ATTAAATTAATATTTAAT
* *
26191791 ACT--ATTAAGA--TAAGT
1 ATTAAATTAATATTTAA-T
26191806 ATTAAATTAA-ATTTAAT
1 ATTAAATTAATATTTAAT
26191823 ATTAAAT
1 ATTAAAT
26191830 CTATTAAAAT
Statistics
Matches: 60, Mismatches: 5, Indels: 20
0.71 0.06 0.24
Matches are distributed among these distances:
14 8 0.13
15 3 0.05
16 6 0.10
17 21 0.35
18 4 0.07
19 3 0.05
20 15 0.25
ACGTcount: A:0.52, C:0.03, G:0.03, T:0.41
Consensus pattern (18 bp):
ATTAAATTAATATTTAAT
Found at i:26191823 original size:68 final size:70
Alignment explanation
Indices: 26191691--26191827 Score: 190
Period size: 68 Copynumber: 2.0 Consensus size: 70
26191681 TGATTAAACT
* * *
26191691 TAATACTTTAATATTAAATTAATATATTATTTATCTACAAGATAAACATTAAATTAAATTTAATA
1 TAATACTTTAATATTAAATTAATAAAATATCTATCTA-AAGATAAACATTAAATTAAATTTAATA
26191756 TTAAGA
65 TTAAGA
**
26191762 TAATCACTTTAATATTAAATTAATAAAATA-CTAT-T-AAGATAAGTATTAAATTAAATTTAATA
1 TAAT-ACTTTAATATTAAATTAATAAAATATCTATCTAAAGATAAACATTAAATTAAATTTAATA
26191824 TTAA
65 TTAA
26191828 ATCTATTAAA
Statistics
Matches: 60, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
68 29 0.48
70 1 0.02
71 7 0.12
72 23 0.38
ACGTcount: A:0.50, C:0.05, G:0.03, T:0.42
Consensus pattern (70 bp):
TAATACTTTAATATTAAATTAATAAAATATCTATCTAAAGATAAACATTAAATTAAATTTAATAT
TAAGA
Found at i:26194223 original size:2 final size:2
Alignment explanation
Indices: 26194216--26194247 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
26194206 AGTAATTATG
26194216 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
26194248 GTAAAACTAC
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:26203229 original size:21 final size:20
Alignment explanation
Indices: 26203192--26203242 Score: 66
Period size: 20 Copynumber: 2.5 Consensus size: 20
26203182 CTAATTTAGT
*
26203192 GATTAATAATGAATTAATTAAA
1 GATTAATTAT-AATTAATT-AA
26203214 GATTAATTATAATTAATTAA
1 GATTAATTATAATTAATTAA
*
26203234 GGTTAATTA
1 GATTAATTA
26203243 ATCATTAATC
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
20 10 0.37
21 8 0.30
22 9 0.33
ACGTcount: A:0.49, C:0.00, G:0.10, T:0.41
Consensus pattern (20 bp):
GATTAATTATAATTAATTAA
Found at i:26203249 original size:21 final size:21
Alignment explanation
Indices: 26203192--26203251 Score: 68
Period size: 21 Copynumber: 2.8 Consensus size: 21
26203182 CTAATTTAGT
*
26203192 GATTAATAATGAATTAATTAAA
1 GATTAATTAT-AATTAATTAAA
26203214 GATTAATTATAATTAATT-AA
1 GATTAATTATAATTAATTAAA
* *
26203234 GGTTAATTAATCATTAAT
1 GATTAATT-ATAATTAAT
26203252 CATATTATAT
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
20 9 0.26
21 16 0.47
22 9 0.26
ACGTcount: A:0.48, C:0.02, G:0.08, T:0.42
Consensus pattern (21 bp):
GATTAATTATAATTAATTAAA
Found at i:26204458 original size:49 final size:49
Alignment explanation
Indices: 26204381--26204474 Score: 161
Period size: 49 Copynumber: 1.9 Consensus size: 49
26204371 AGCATTGTTA
*
26204381 CCGGGCAACCTAGGATGGTAAAGTGTGTATATAGTGAAAACCATCGTTG
1 CCGGACAACCTAGGATGGTAAAGTGTGTATATAGTGAAAACCATCGTTG
* *
26204430 CCGGACAACCTGGGATGGTAAAGTGTGTATATAGTTAAAACCATC
1 CCGGACAACCTAGGATGGTAAAGTGTGTATATAGTGAAAACCATC
26204475 ATTTTCAGGC
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
49 42 1.00
ACGTcount: A:0.32, C:0.17, G:0.27, T:0.24
Consensus pattern (49 bp):
CCGGACAACCTAGGATGGTAAAGTGTGTATATAGTGAAAACCATCGTTG
Found at i:26214309 original size:6 final size:6
Alignment explanation
Indices: 26214298--26214324 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
26214288 GTATACTTTA
26214298 TTTTTC TTTTTC TTTTTC TTTTTC TTT
1 TTTTTC TTTTTC TTTTTC TTTTTC TTT
26214325 GCGATATATT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.00, C:0.15, G:0.00, T:0.85
Consensus pattern (6 bp):
TTTTTC
Found at i:26223438 original size:23 final size:23
Alignment explanation
Indices: 26223407--26223478 Score: 83
Period size: 23 Copynumber: 3.2 Consensus size: 23
26223397 TGATAAGATC
* *
26223407 TATTATGTGATGCCTTTTTGGCA
1 TATTTTGTGATGCCTTTGTGGCA
**
26223430 TATTTTGTGATGCCTTTGTGGTG
1 TATTTTGTGATGCCTTTGTGGCA
* *
26223453 TA-TTTGTGAAGTCTTTGTGGCA
1 TATTTTGTGATGCCTTTGTGGCA
26223475 TATT
1 TATT
26223479 CTATAACGCC
Statistics
Matches: 40, Mismatches: 8, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
22 18 0.45
23 22 0.55
ACGTcount: A:0.15, C:0.10, G:0.25, T:0.50
Consensus pattern (23 bp):
TATTTTGTGATGCCTTTGTGGCA
Found at i:26223461 original size:22 final size:22
Alignment explanation
Indices: 26223407--26223478 Score: 81
Period size: 22 Copynumber: 3.2 Consensus size: 22
26223397 TGATAAGATC
*
26223407 TATTATGTGATGCCTTTTTGGCA
1 TATT-TGTGATGCCTTTGTGGCA
**
26223430 TATTTTGTGATGCCTTTGTGGTG
1 TA-TTTGTGATGCCTTTGTGGCA
* *
26223453 TATTTGTGAAGTCTTTGTGGCA
1 TATTTGTGATGCCTTTGTGGCA
26223475 TATT
1 TATT
26223479 CTATAACGCC
Statistics
Matches: 41, Mismatches: 7, Indels: 3
0.80 0.14 0.06
Matches are distributed among these distances:
22 20 0.49
23 19 0.46
24 2 0.05
ACGTcount: A:0.15, C:0.10, G:0.25, T:0.50
Consensus pattern (22 bp):
TATTTGTGATGCCTTTGTGGCA
Found at i:26226134 original size:119 final size:117
Alignment explanation
Indices: 26225968--26226202 Score: 380
Period size: 119 Copynumber: 2.0 Consensus size: 117
26225958 AATTAACATC
*
26225968 CTTTTGGAAAGAATATAATTAATATATGAATTTGATTCATACAAAATATTAGTTGTATATATTTT
1 CTTTTGGAAAGAATATAATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTT
* * **
26226033 ACTGAATTTATTAATATAAATAGTTATATGAATTAATTTTGGTCAAAATATT
66 ACCGAATTTATTAATATAAACAGTTATATGAATTAATTTCAGTCAAAATATT
* *
26226085 CTTTTGGGAAGAATATAATTAATATATATTAATTTGATTCATACAAAATATTAATTGTATATATT
1 CTTTTGGAAAGAATATAATT-A-ATATATGAATTTGATTCATACAAAATATTAATTGTATATATT
*
26226150 TTACCGAATTTATTAATATAAACAGTTATATTAATTAATTTCAGTCAAAATAT
64 TTACCGAATTTATTAATATAAACAGTTATATGAATTAATTTCAGTCAAAATAT
26226203 AAAATTAATA
Statistics
Matches: 108, Mismatches: 8, Indels: 2
0.92 0.07 0.02
Matches are distributed among these distances:
117 19 0.18
118 1 0.01
119 88 0.81
ACGTcount: A:0.42, C:0.06, G:0.09, T:0.44
Consensus pattern (117 bp):
CTTTTGGAAAGAATATAATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTT
ACCGAATTTATTAATATAAACAGTTATATGAATTAATTTCAGTCAAAATATT
Found at i:26228431 original size:18 final size:19
Alignment explanation
Indices: 26228410--26228453 Score: 56
Period size: 18 Copynumber: 2.4 Consensus size: 19
26228400 CCACAAGGAC
*
26228410 AAGGACAAAGG-AAAGGCT
1 AAGGACAAAGGTAAAGCCT
*
26228428 AAGG-CTAAGGTAAAGCCT
1 AAGGACAAAGGTAAAGCCT
26228446 AAGGACAA
1 AAGGACAA
26228454 TAGCAAGGCC
Statistics
Matches: 21, Mismatches: 3, Indels: 3
0.78 0.11 0.11
Matches are distributed among these distances:
17 5 0.24
18 14 0.67
19 2 0.10
ACGTcount: A:0.48, C:0.14, G:0.30, T:0.09
Consensus pattern (19 bp):
AAGGACAAAGGTAAAGCCT
Found at i:26229800 original size:50 final size:50
Alignment explanation
Indices: 26229725--26229965 Score: 315
Period size: 50 Copynumber: 4.8 Consensus size: 50
26229715 CATTTGGGTA
*
26229725 AAGAGGTCCCATGTAAGACCATGTCTGAGACATGGCGTTGGCACCGAGAT
1 AAGAGGTCCCATGTAAGACCATGTCTGAGACATGGCATTGGCACCGAGAT
* *
26229775 AAGAGGTCTCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGAT
1 AAGAGGTCCCATGTAAGACCATGTCTGAGACATGGCATTGGCACCGAGAT
*
26229825 AAGAGGTCCCATGTAAGACCATGTCT-AGGACATGGCGTTGGCACCGAGAT
1 AAGAGGTCCCATGTAAGACCATGTCTGA-GACATGGCATTGGCACCGAGAT
* ** * *
26229875 GAGAGGTCCCCCGTAAGACCATGTCTG-GAACATGGCATGGGCACCGATAT
1 AAGAGGTCCCATGTAAGACCATGTCTGAG-ACATGGCATTGGCACCGAGAT
* ** * * *
26229925 GAGAACTCCCATGTAAGACCATATCTGGGATATGGCATTGG
1 AAGAGGTCCCATGTAAGACCATGTCTGAGACATGGCATTGG
26229966 TAGTACAGGA
Statistics
Matches: 168, Mismatches: 19, Indels: 8
0.86 0.10 0.04
Matches are distributed among these distances:
49 1 0.01
50 166 0.99
51 1 0.01
ACGTcount: A:0.28, C:0.22, G:0.29, T:0.21
Consensus pattern (50 bp):
AAGAGGTCCCATGTAAGACCATGTCTGAGACATGGCATTGGCACCGAGAT
Found at i:26230268 original size:20 final size:20
Alignment explanation
Indices: 26230230--26230268 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
26230220 TAAGCAAGCA
*
26230230 AGTAAGTAAACAAGTAAGTG
1 AGTAAGTAAACAAGAAAGTG
*
26230250 AGTAAGTAAAGAAGAAAGT
1 AGTAAGTAAACAAGAAAGT
26230269 AAAGATCCTA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.54, C:0.03, G:0.26, T:0.18
Consensus pattern (20 bp):
AGTAAGTAAACAAGAAAGTG
Found at i:26236199 original size:137 final size:138
Alignment explanation
Indices: 26235747--26236304 Score: 854
Period size: 138 Copynumber: 4.1 Consensus size: 138
26235737 GAGAACATAG
*
26235747 ATATAATTAATATATGAGTTTGATTCATACAAAAATATTAATTGTATATATTTTACCGAATTTAT
1 ATATAATTAATATATGAATTTGATTCATAC-AAAATATTAATTGTATATATTTTACCGAATTTAT
* * *
26235812 TAATATAAACATTTATATTAATTGATTTCGGTCAAAATATAAAAGACATGGAAATTAATGTTCTT
65 TAATATAAACAGTTATATTAATTAATTTCGGTCAAAATATAAAAGACATGGAAATTAATATTCTT
26235877 TTGGAAAGA
130 TTGGAAAGA
** *
26235886 ATATAATTAATATATGAATTTGATTCATACAAAATATTTGTTGTATATATTTTACCGGATTTATT
1 ATATAATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACCGAATTTATT
* * **
26235951 AATATAAACAGTTATGTTAATTAGTTTCTATCAAAATATAAAAGACATGGAAATTAATATTCTTT
66 AATATAAACAGTTATATTAATTAATTTCGGTCAAAATATAAAAGACATGGAAATTAATATTCTTT
26236016 TGGAAAGA
131 TGGAAAGA
26236024 ATATAATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACCGAATTTATT
1 ATATAATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACCGAATTTATT
** * *
26236089 AATATAAGGAGTTATATTAATTAATTT-GGTCAAAATATAAAAGATATGGAAAGTAATATTCTTT
66 AATATAAACAGTTATATTAATTAATTTCGGTCAAAATATAAAAGACATGGAAATTAATATTCTTT
26236153 TGGAAAGA
131 TGGAAAGA
*
26236161 ATATAATCAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACCGAATTTATT
1 ATATAATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACCGAATTTATT
* ** * * *
26236226 AATATAAAC-GATTATATTAATTAATTT--TTTTAAATATAAAAAACACGAAAATTAATATTCTT
66 AATATAAACAG-TTATATTAATTAATTTCGGTCAAAATATAAAAGACATGGAAATTAATATTCTT
*
26236288 TTGGAAATA
130 TTGGAAAGA
*
26236297 ATACAATT
1 ATATAATT
26236305 CCTTTTTTCT
Statistics
Matches: 382, Mismatches: 36, Indels: 5
0.90 0.09 0.01
Matches are distributed among these distances:
136 42 0.11
137 128 0.34
138 183 0.48
139 29 0.08
ACGTcount: A:0.43, C:0.06, G:0.10, T:0.41
Consensus pattern (138 bp):
ATATAATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACCGAATTTATT
AATATAAACAGTTATATTAATTAATTTCGGTCAAAATATAAAAGACATGGAAATTAATATTCTTT
TGGAAAGA
Found at i:26236248 original size:275 final size:275
Alignment explanation
Indices: 26235747--26236304 Score: 879
Period size: 275 Copynumber: 2.0 Consensus size: 275
26235737 GAGAACATAG
*
26235747 ATATAATTAATATATGAGTTTGATTCATACAAAAATATTAATTGTATATATTTTACCGAATTTAT
1 ATATAATTAATATATGAATTTGATTCATACAAAAATATTAATTGTATATATTTTACCGAATTTAT
* * * *
26235812 TAATATAAACATTTATATTAATTGATTTCGGTCAAAATATAAAAGACATGGAAATTAATGTTCTT
66 TAATATAAACAGTTATATTAATTAATTTCGGTCAAAATATAAAAGACATGGAAAGTAATATTCTT
* **
26235877 TTGGAAAGAATATAATTAATATATGAATTTGATTCATACAAAATATTTGTTGTATATATTTTACC
131 TTGGAAAGAATATAATCAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACC
* * * * * *
26235942 GGATTTATTAATATAAACAGTTATGTTAATTAGTTTCTATCAAAATATAAAAGACATGGAAATTA
196 GAATTTATTAATATAAACAGTTATATTAATTAATTT-T-TCAAAATATAAAAAACACGAAAATTA
26236007 ATATTCTTTTGGAAAGA
259 ATATTCTTTTGGAAAGA
26236024 ATATAATTAATATATGAATTTGATTCATAC-AAAATATTAATTGTATATATTTTACCGAATTTAT
1 ATATAATTAATATATGAATTTGATTCATACAAAAATATTAATTGTATATATTTTACCGAATTTAT
** *
26236088 TAATATAAGGAGTTATATTAATTAATTT-GGTCAAAATATAAAAGATATGGAAAGTAATATTCTT
66 TAATATAAACAGTTATATTAATTAATTTCGGTCAAAATATAAAAGACATGGAAAGTAATATTCTT
26236152 TTGGAAAGAATATAATCAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACC
131 TTGGAAAGAATATAATCAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACC
**
26236217 GAATTTATTAATATAAAC-GATTATATTAATTAATTTTTTTAAATATAAAAAACACGAAAATTAA
196 GAATTTATTAATATAAACAG-TTATATTAATTAATTTTTCAAAATATAAAAAACACGAAAATTAA
*
26236281 TATTCTTTTGGAAATA
260 TATTCTTTTGGAAAGA
*
26236297 ATACAATT
1 ATATAATT
26236305 CCTTTTTTCT
Statistics
Matches: 259, Mismatches: 21, Indels: 6
0.91 0.07 0.02
Matches are distributed among these distances:
273 44 0.17
274 2 0.01
275 126 0.49
276 58 0.22
277 29 0.11
ACGTcount: A:0.43, C:0.06, G:0.10, T:0.41
Consensus pattern (275 bp):
ATATAATTAATATATGAATTTGATTCATACAAAAATATTAATTGTATATATTTTACCGAATTTAT
TAATATAAACAGTTATATTAATTAATTTCGGTCAAAATATAAAAGACATGGAAAGTAATATTCTT
TTGGAAAGAATATAATCAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACC
GAATTTATTAATATAAACAGTTATATTAATTAATTTTTCAAAATATAAAAAACACGAAAATTAAT
ATTCTTTTGGAAAGA
Found at i:26236440 original size:75 final size:76
Alignment explanation
Indices: 26236280--26236504 Score: 325
Period size: 75 Copynumber: 3.0 Consensus size: 76
26236270 ACGAAAATTA
* * * *
26236280 ATATTCTTTTGGAAATAATACAATTCCTTTTTTCTAACTTTCCATTTGTATTCTCTAGTAATAAA
1 ATATTCTTTTGGAAATAATATAATTCCTTTTTTCTAACTTTCCATTTGTCTTTTCTATTAAT-AA
26236345 T-GAATAATCCT
65 TGGAATAATCCT
*
26236356 ATATT-TTTTGGAAATAATATAATT-CGTTTTTCTAACTTTCCATTTGTCTTTTCTATTAATAAT
1 ATATTCTTTTGGAAATAATATAATTCCTTTTTTCTAACTTTCCATTTGTCTTTTCTATTAATAAT
*
26236419 GGAATAATTCT
66 GGAATAATCCT
* *
26236430 ATATTCTTTTGG-AAGAATATAATTCCTTTTTTCTAACTTTCTATTTGTCTTCTT-TATTAATAA
1 ATATTCTTTTGGAAATAATATAATTCCTTTTTTCTAACTTTCCATTTGTCTT-TTCTATTAATAA
26236493 TGGAATAATCCT
65 TGGAATAATCCT
26236505 GGTTTTCCTT
Statistics
Matches: 135, Mismatches: 10, Indels: 9
0.88 0.06 0.06
Matches are distributed among these distances:
73 3 0.02
74 57 0.42
75 68 0.50
76 7 0.05
ACGTcount: A:0.30, C:0.13, G:0.08, T:0.49
Consensus pattern (76 bp):
ATATTCTTTTGGAAATAATATAATTCCTTTTTTCTAACTTTCCATTTGTCTTTTCTATTAATAAT
GGAATAATCCT
Found at i:26239802 original size:14 final size:14
Alignment explanation
Indices: 26239783--26239815 Score: 66
Period size: 14 Copynumber: 2.4 Consensus size: 14
26239773 TAGACGTTAT
26239783 GGCTAGATTGAGAA
1 GGCTAGATTGAGAA
26239797 GGCTAGATTGAGAA
1 GGCTAGATTGAGAA
26239811 GGCTA
1 GGCTA
26239816 CATTAGCCAC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.33, C:0.09, G:0.36, T:0.21
Consensus pattern (14 bp):
GGCTAGATTGAGAA
Found at i:26240926 original size:17 final size:17
Alignment explanation
Indices: 26240904--26240940 Score: 74
Period size: 17 Copynumber: 2.2 Consensus size: 17
26240894 CAACTACAAA
26240904 ATCCCAACCCAATGCAT
1 ATCCCAACCCAATGCAT
26240921 ATCCCAACCCAATGCAT
1 ATCCCAACCCAATGCAT
26240938 ATC
1 ATC
26240941 TCATACATAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.35, C:0.41, G:0.05, T:0.19
Consensus pattern (17 bp):
ATCCCAACCCAATGCAT
Found at i:26244448 original size:12 final size:12
Alignment explanation
Indices: 26244431--26244472 Score: 57
Period size: 12 Copynumber: 3.5 Consensus size: 12
26244421 AACAGTAATT
26244431 AGTAACGATAGC
1 AGTAACGATAGC
*
26244443 AGTAACGGTAGC
1 AGTAACGATAGC
* *
26244455 AGTAACAATAAC
1 AGTAACGATAGC
26244467 AGTAAC
1 AGTAAC
26244473 AGTATTCAAC
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
12 26 1.00
ACGTcount: A:0.45, C:0.17, G:0.21, T:0.17
Consensus pattern (12 bp):
AGTAACGATAGC
Found at i:26244761 original size:40 final size:41
Alignment explanation
Indices: 26244715--26244802 Score: 115
Period size: 40 Copynumber: 2.2 Consensus size: 41
26244705 AATTCATTAC
* * * *
26244715 TTCAGTAATTTCACAGTTTAATGCAGTACAC-ATAACAATA
1 TTCAGTAACTTCACAATTCAATGCAGTACACAAAAACAATA
* *
26244755 TTCAGTAACTTCACAATTCAATTCAGTACTCAAAAACAATA
1 TTCAGTAACTTCACAATTCAATGCAGTACACAAAAACAATA
26244796 TTCAGTA
1 TTCAGTA
26244803 TTCCATAATT
Statistics
Matches: 41, Mismatches: 6, Indels: 1
0.85 0.12 0.02
Matches are distributed among these distances:
40 26 0.63
41 15 0.37
ACGTcount: A:0.41, C:0.19, G:0.08, T:0.32
Consensus pattern (41 bp):
TTCAGTAACTTCACAATTCAATGCAGTACACAAAAACAATA
Found at i:26245574 original size:17 final size:17
Alignment explanation
Indices: 26245552--26245584 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
26245542 AACGGTCTCT
*
26245552 GTTTCTTTTCTTCTTTG
1 GTTTCTTTTATTCTTTG
26245569 GTTTCTTTTATTCTTT
1 GTTTCTTTTATTCTTT
26245585 TATTTTATTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.03, C:0.15, G:0.09, T:0.73
Consensus pattern (17 bp):
GTTTCTTTTATTCTTTG
Found at i:26245617 original size:3 final size:3
Alignment explanation
Indices: 26245609--26245652 Score: 54
Period size: 3 Copynumber: 14.7 Consensus size: 3
26245599 ATGTATTAGT
* *
26245609 TAA TAA TAA TAA TAA CAA TATA TTA TAA TAA TAA T-A TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TA-A TAA TAA TAA TAA TAA TAA TAA TA
26245653 TTATTTAATT
Statistics
Matches: 35, Mismatches: 4, Indels: 4
0.81 0.09 0.09
Matches are distributed among these distances:
2 2 0.06
3 31 0.89
4 2 0.06
ACGTcount: A:0.61, C:0.02, G:0.00, T:0.36
Consensus pattern (3 bp):
TAA
Found at i:26251924 original size:46 final size:46
Alignment explanation
Indices: 26251872--26251964 Score: 159
Period size: 46 Copynumber: 2.0 Consensus size: 46
26251862 CAAAGAAAAG
* *
26251872 ACCTCGACCCACTATCAAGAATGATAGGAACCTTGGTATATGATGA
1 ACCTCGACCCACTATCAAGAATGATAGAAACCTTGGTATATAATGA
*
26251918 ACCTCGACCCACTATCAAGGATGATAGAAACCTTGGTATATAATGA
1 ACCTCGACCCACTATCAAGAATGATAGAAACCTTGGTATATAATGA
26251964 A
1 A
26251965 TGCCACACTA
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
46 44 1.00
ACGTcount: A:0.37, C:0.22, G:0.18, T:0.24
Consensus pattern (46 bp):
ACCTCGACCCACTATCAAGAATGATAGAAACCTTGGTATATAATGA
Found at i:26258428 original size:13 final size:13
Alignment explanation
Indices: 26258410--26258434 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
26258400 GAATTTACTT
26258410 GTGTGAAAATTTC
1 GTGTGAAAATTTC
26258423 GTGTGAAAATTT
1 GTGTGAAAATTT
26258435 TATCGTTTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.04, G:0.24, T:0.40
Consensus pattern (13 bp):
GTGTGAAAATTTC
Found at i:26258926 original size:22 final size:23
Alignment explanation
Indices: 26258901--26258947 Score: 87
Period size: 22 Copynumber: 2.1 Consensus size: 23
26258891 AATGCTTGAC
26258901 ATTGTGATAGTTGATGAT-AAAA
1 ATTGTGATAGTTGATGATGAAAA
26258923 ATTGTGATAGTTGATGATGAAAA
1 ATTGTGATAGTTGATGATGAAAA
26258946 AT
1 AT
26258948 GAAAGAAATG
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
22 18 0.75
23 6 0.25
ACGTcount: A:0.40, C:0.00, G:0.23, T:0.36
Consensus pattern (23 bp):
ATTGTGATAGTTGATGATGAAAA
Found at i:26260114 original size:41 final size:41
Alignment explanation
Indices: 26260052--26260278 Score: 400
Period size: 41 Copynumber: 5.5 Consensus size: 41
26260042 GACTTTAAGT
*
26260052 CTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGTTACAAAC
1 CTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGTTATAAAC
* *
26260093 CTAGCAGGCTAAGTGCTGGTGATCTGAATCAGGTTACAAAC
1 CTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGTTATAAAC
26260134 CTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGTTATAAAC
1 CTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGTTATAAAC
26260175 CTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGTTATAAAC
1 CTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGTTATAAAC
* *
26260216 CTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGCTATAAGC
1 CTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGTTATAAAC
*
26260257 CTAGCAGGCTAAGTGCTGGTGA
1 CTAGCAGGCTAAGTGCCGGTGA
26260279 ATATGTTAAA
Statistics
Matches: 180, Mismatches: 6, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
41 180 1.00
ACGTcount: A:0.28, C:0.20, G:0.28, T:0.23
Consensus pattern (41 bp):
CTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGTTATAAAC
Found at i:26267060 original size:40 final size:41
Alignment explanation
Indices: 26267016--26267151 Score: 131
Period size: 40 Copynumber: 3.4 Consensus size: 41
26267006 GCTTATCCTT
* *
26267016 AGCTCATAGAGGAGCTTTACTAATACACAA-TTGATCTATA
1 AGCTCATAGAGGAGCTTCATTAATACACAACTTGATCTATA
* * * * *
26267056 AGCTCAGAGGGGAGCTTCGTTGATACACAACTTG-TCCATA
1 AGCTCATAGAGGAGCTTCATTAATACACAACTTGATCTATA
*
26267096 AGCTCACA-AGGGAGCTTCATTAATACACAACTT-ATCCT-TA
1 AGCTCATAGA-GGAGCTTCATTAATACACAACTTGAT-CTATA
*
26267136 A-CTCATGGAGGAGCTT
1 AGCTCATAGAGGAGCTT
26267152 TGCCGATACA
Statistics
Matches: 77, Mismatches: 14, Indels: 11
0.75 0.14 0.11
Matches are distributed among these distances:
39 11 0.14
40 62 0.81
41 4 0.05
ACGTcount: A:0.32, C:0.21, G:0.19, T:0.27
Consensus pattern (41 bp):
AGCTCATAGAGGAGCTTCATTAATACACAACTTGATCTATA
Found at i:26267100 original size:80 final size:80
Alignment explanation
Indices: 26266974--26267125 Score: 182
Period size: 80 Copynumber: 1.9 Consensus size: 80
26266964 CTTCATCACT
* * * * * *
26266974 TAAGCTCACGTGGGGAGCTTCACTGATCCACAGCTTATCCTTAGCTCA-TAGAGGAGCTTTACTA
1 TAAGCTCACGAGGGGAGCTTCACTGATACACAACTTATCCTAAGCTCACAAG-GGAGCTTCACTA
26267038 ATACACAATTGATCTA
65 ATACACAATTGATCTA
** * *
26267054 TAAGCTCA-GAGGGGAGCTTCGTTGATACACAACTTGTCCATAAGCTCACAAGGGAGCTTCATTA
1 TAAGCTCACGAGGGGAGCTTCACTGATACACAACTTATCC-TAAGCTCACAAGGGAGCTTCACTA
26267118 ATACACAA
65 ATACACAA
26267126 CTTATCCTTA
Statistics
Matches: 60, Mismatches: 10, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
79 25 0.42
80 33 0.55
81 2 0.03
ACGTcount: A:0.31, C:0.23, G:0.20, T:0.26
Consensus pattern (80 bp):
TAAGCTCACGAGGGGAGCTTCACTGATACACAACTTATCCTAAGCTCACAAGGGAGCTTCACTAA
TACACAATTGATCTA
Found at i:26267459 original size:52 final size:52
Alignment explanation
Indices: 26267397--26267556 Score: 203
Period size: 52 Copynumber: 3.1 Consensus size: 52
26267387 AATTCCAAAC
* *
26267397 CACTCACACTTTTAAAAACTCAGTAAAAAACATACTCATAACGGAGCCCAAT
1 CACTCACACTTTTAAAAGCTTAGTAAAAAACATACTCATAACGGAGCCCAAT
* * * * *
26267449 CACTCCCACTTTTAAAAGCTTAGTAAAGAACATAATCATAATGGAGCCTAAT
1 CACTCACACTTTTAAAAGCTTAGTAAAAAACATACTCATAACGGAGCCCAAT
* * * * * *
26267501 CACTCATACTTTTATAAGCTTAGTAAATAACATACTTATAGCGGAGCCCGAT
1 CACTCACACTTTTAAAAGCTTAGTAAAAAACATACTCATAACGGAGCCCAAT
26267553 CACT
1 CACT
26267557 TATCAAAAAT
Statistics
Matches: 91, Mismatches: 17, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
52 91 1.00
ACGTcount: A:0.39, C:0.24, G:0.11, T:0.26
Consensus pattern (52 bp):
CACTCACACTTTTAAAAGCTTAGTAAAAAACATACTCATAACGGAGCCCAAT
Found at i:26269129 original size:22 final size:22
Alignment explanation
Indices: 26269104--26269148 Score: 81
Period size: 22 Copynumber: 2.0 Consensus size: 22
26269094 ATACACTTCT
*
26269104 TCATGTCAACATTCTATCAAAA
1 TCATATCAACATTCTATCAAAA
26269126 TCATATCAACATTCTATCAAAA
1 TCATATCAACATTCTATCAAAA
26269148 T
1 T
26269149 GTAATTAAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.42, C:0.22, G:0.02, T:0.33
Consensus pattern (22 bp):
TCATATCAACATTCTATCAAAA
Found at i:26269226 original size:12 final size:12
Alignment explanation
Indices: 26269209--26269242 Score: 68
Period size: 12 Copynumber: 2.8 Consensus size: 12
26269199 GGATTCAAAC
26269209 CTAAAAGTTTCA
1 CTAAAAGTTTCA
26269221 CTAAAAGTTTCA
1 CTAAAAGTTTCA
26269233 CTAAAAGTTT
1 CTAAAAGTTT
26269243 TCGATTTGCG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 22 1.00
ACGTcount: A:0.41, C:0.15, G:0.09, T:0.35
Consensus pattern (12 bp):
CTAAAAGTTTCA
Found at i:26277305 original size:323 final size:324
Alignment explanation
Indices: 26276590--26277557 Score: 1758
Period size: 323 Copynumber: 3.0 Consensus size: 324
26276580 GTTGATGAAG
*
26276590 ACCCTGGCATGTTTTTGACTCTCTCTCTTCATCTTGGAAACAATCATTGTATCAAGACAATAATT
1 ACCCTGGCATGTTTTTGACTCTGTCTCTTCATCTTGGAAACAATCATTGTATCAAGACAATAATT
*
26276655 TCTATCAATTAGGAAACCTTGAAAGTTGTTTCTTTAATTATTATAAAAAATTTCAACATTTTAGA
66 TCTGTCAATTAGGAAACCTTGAAAGTTGTTTCTTTAATTATTATAAAAAATTTCAACATTTTAGA
*
26276720 GGGATAATAATGTAGAGAAGGGAAATCATAGTGTTTTTTATTTTATTTCAAGCAAGCAACAGAGG
131 GGGATAATAACGTAGAGAAGGGAAATCATAGTGTTTTTTATTTTATTTCAAGCAAGCAACAGAGG
* * **
26276785 AGGTTGAGACACTTATTATTGTCTGGGGTAATTTATAGATATAGGAACTGGTCGAGTAAATGCCT
196 AGGTTGAGACACTTATTGTTGTATGGGGTAATTTATCCATATAGGAACTGGTCGAGTAAATGCCT
*
26276850 TTATGATCAGTTTAATCATAAATAACCTTGGGGCTTTCCCCATAAGTGGTTACCTTTTTATTTT
261 TTATGATCAGTTTAATCATAAATAACCTTGGGGCTTTCCCCATACGTGGTTACCTTTTTATTTT
26276914 ACCCTGGCATGTTTTTGACTCTGTCTCTTCATCTTGGAAACAATCATTGTATCAAGACAATAATT
1 ACCCTGGCATGTTTTTGACTCTGTCTCTTCATCTTGGAAACAATCATTGTATCAAGACAATAATT
*
26276979 TCTGTCTATTAGGAAACCTTGAAAGTTGTTTCTTTAATTATTATAAAAAATTTCAACATTTTAGA
66 TCTGTCAATTAGGAAACCTTGAAAGTTGTTTCTTTAATTATTATAAAAAATTTCAACATTTTAGA
* *
26277044 GGGATAATAACGTAGAAAAGGGAAATCATAGTGTTTTTTATTTTATTTCAAGCAAGCAACAGAAG
131 GGGATAATAACGTAGAGAAGGGAAATCATAGTGTTTTTTATTTTATTTCAAGCAAGCAACAGAGG
26277109 AGGTTGAGACACTT-TTGTTGTATGGGGTAATTTATCCATATAGGAACTGGTCGAGTAAATGCCT
196 AGGTTGAGACACTTATTGTTGTATGGGGTAATTTATCCATATAGGAACTGGTCGAGTAAATGCCT
*
26277173 TTATGATCAGTTTAATCTTAAATAACCTTGGGGCTTTCCCCATACGTGGTTACCTTTTTATTTT
261 TTATGATCAGTTTAATCATAAATAACCTTGGGGCTTTCCCCATACGTGGTTACCTTTTTATTTT
*
26277237 ACCCTGGCATGTTTTTGACTCTGTCTCTTCATCTTGGAAACAATCATTGTATCAACACAATAATT
1 ACCCTGGCATGTTTTTGACTCTGTCTCTTCATCTTGGAAACAATCATTGTATCAAGACAATAATT
26277302 TCTGTCAATTAGGAAACCTTGAAAGTTGTTTCTTTAATTATTATAAAAAATTTCAACATTTTAGA
66 TCTGTCAATTAGGAAACCTTGAAAGTTGTTTCTTTAATTATTATAAAAAATTTCAACATTTTAGA
26277367 GGGATAATAACGTAGAGAAGGGAAATCATAGTGTTTTTTATTTTATTTCAAGCAAGCAACAGAGG
131 GGGATAATAACGTAGAGAAGGGAAATCATAGTGTTTTTTATTTTATTTCAAGCAAGCAACAGAGG
* * *
26277432 AGGTTGAGACACTTACTGTTGTATGGGGTAATTTAGCCATATAGCAACTGGTCTTGAGTAAATGC
196 AGGTTGAGACACTTATTGTTGTATGGGGTAATTTATCCATATAGGAACTGGTC--GAGTAAATGC
*
26277497 CTTTCTGATCAGTTTAATCATAAATAACCTTGGGGCTTTCCCCATACGTGGTTACCTTTTT
259 CTTTATGATCAGTTTAATCATAAATAACCTTGGGGCTTTCCCCATACGTGGTTACCTTTTT
26277558 CTCCAAAGGA
Statistics
Matches: 620, Mismatches: 21, Indels: 4
0.96 0.03 0.01
Matches are distributed among these distances:
323 313 0.50
324 238 0.38
326 69 0.11
ACGTcount: A:0.31, C:0.15, G:0.17, T:0.37
Consensus pattern (324 bp):
ACCCTGGCATGTTTTTGACTCTGTCTCTTCATCTTGGAAACAATCATTGTATCAAGACAATAATT
TCTGTCAATTAGGAAACCTTGAAAGTTGTTTCTTTAATTATTATAAAAAATTTCAACATTTTAGA
GGGATAATAACGTAGAGAAGGGAAATCATAGTGTTTTTTATTTTATTTCAAGCAAGCAACAGAGG
AGGTTGAGACACTTATTGTTGTATGGGGTAATTTATCCATATAGGAACTGGTCGAGTAAATGCCT
TTATGATCAGTTTAATCATAAATAACCTTGGGGCTTTCCCCATACGTGGTTACCTTTTTATTTT
Found at i:26293562 original size:18 final size:19
Alignment explanation
Indices: 26293533--26293574 Score: 61
Period size: 18 Copynumber: 2.3 Consensus size: 19
26293523 ATTTTCTAGG
26293533 ATTTTTTAAAAAAAT-TAGA
1 ATTTTTTAAAAAAATATA-A
26293552 ATTTTTT-AAAAAATATAA
1 ATTTTTTAAAAAAATATAA
26293570 ATTTT
1 ATTTT
26293575 GGAATTTTTA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 13 0.59
19 9 0.41
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (19 bp):
ATTTTTTAAAAAAATATAA
Found at i:26293586 original size:18 final size:19
Alignment explanation
Indices: 26293565--26293601 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
26293555 TTTTAAAAAA
26293565 TATAAAT-TTTGGAATTTT
1 TATAAATGTTTGGAATTTT
*
26293583 TATAAATGTTTTGAATTTT
1 TATAAATGTTTGGAATTTT
26293602 CAAAGTTATT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 7 0.41
19 10 0.59
ACGTcount: A:0.32, C:0.00, G:0.11, T:0.57
Consensus pattern (19 bp):
TATAAATGTTTGGAATTTT
Found at i:26293613 original size:19 final size:20
Alignment explanation
Indices: 26293591--26293638 Score: 71
Period size: 20 Copynumber: 2.5 Consensus size: 20
26293581 TTTATAAATG
*
26293591 TTTTGAATTT-TCAAAGTTA
1 TTTTGAATTTATCAAAATTA
*
26293610 TTTTGAATTTATGAAAATTA
1 TTTTGAATTTATCAAAATTA
26293630 TTTTGAATT
1 TTTTGAATT
26293639 ATTTTGTAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
19 10 0.38
20 16 0.62
ACGTcount: A:0.33, C:0.02, G:0.10, T:0.54
Consensus pattern (20 bp):
TTTTGAATTTATCAAAATTA
Found at i:26294433 original size:24 final size:25
Alignment explanation
Indices: 26294405--26294454 Score: 68
Period size: 24 Copynumber: 2.0 Consensus size: 25
26294395 AAACAGAAAC
26294405 AAAAACCACA-AATGAAT-CATGTAA
1 AAAAACCA-AGAATGAATGCATGTAA
*
26294429 AAAAACCAAGAATGAATGCTTGTAA
1 AAAAACCAAGAATGAATGCATGTAA
26294454 A
1 A
26294455 CTCTCGATTT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
23 1 0.04
24 15 0.65
25 7 0.30
ACGTcount: A:0.56, C:0.14, G:0.12, T:0.18
Consensus pattern (25 bp):
AAAAACCAAGAATGAATGCATGTAA
Found at i:26295490 original size:46 final size:46
Alignment explanation
Indices: 26295437--26295529 Score: 186
Period size: 46 Copynumber: 2.0 Consensus size: 46
26295427 TTATTTTATT
26295437 TTTTTTATTCCAAACTTTGTTATGTATGTCTATATATACATTTCTA
1 TTTTTTATTCCAAACTTTGTTATGTATGTCTATATATACATTTCTA
26295483 TTTTTTATTCCAAACTTTGTTATGTATGTCTATATATACATTTCTA
1 TTTTTTATTCCAAACTTTGTTATGTATGTCTATATATACATTTCTA
26295529 T
1 T
26295530 AATATATATG
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
46 47 1.00
ACGTcount: A:0.26, C:0.13, G:0.06, T:0.55
Consensus pattern (46 bp):
TTTTTTATTCCAAACTTTGTTATGTATGTCTATATATACATTTCTA
Found at i:26295720 original size:45 final size:45
Alignment explanation
Indices: 26295660--26295771 Score: 206
Period size: 45 Copynumber: 2.5 Consensus size: 45
26295650 ATGTACATAT
* *
26295660 ATTTTATAATTTATATATATACGTATGTTTCTGTTATATTTTATA
1 ATTTTAAAATGTATATATATACGTATGTTTCTGTTATATTTTATA
26295705 ATTTTAAAATGTATATATATACGTATGTTTCTGTTATATTTTATA
1 ATTTTAAAATGTATATATATACGTATGTTTCTGTTATATTTTATA
26295750 ATTTTAAAATGTATATATATAC
1 ATTTTAAAATGTATATATATAC
26295772 ACACATATTT
Statistics
Matches: 65, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
45 65 1.00
ACGTcount: A:0.35, C:0.04, G:0.07, T:0.54
Consensus pattern (45 bp):
ATTTTAAAATGTATATATATACGTATGTTTCTGTTATATTTTATA
Found at i:26308160 original size:39 final size:39
Alignment explanation
Indices: 26308093--26308216 Score: 167
Period size: 39 Copynumber: 3.2 Consensus size: 39
26308083 ATGGAATATC
* * *
26308093 AATTATACTGAATGATTTGCTCAAACGAGCATTATGCATT
1 AATTATACTGAATG-CTTGCTCAAACGAGCATTATCCACT
*
26308133 AATTATACCGAATGCTTGCTCAAACGAGCATTATCCACT
1 AATTATACTGAATGCTTGCTCAAACGAGCATTATCCACT
* * *
26308172 GATTATATTGAATGCTTGCTCAAACGAGCATTAGCCACT
1 AATTATACTGAATGCTTGCTCAAACGAGCATTATCCACT
*
26308211 GATTAT
1 AATTAT
26308217 TTTGAATAAG
Statistics
Matches: 76, Mismatches: 8, Indels: 1
0.89 0.09 0.01
Matches are distributed among these distances:
39 63 0.83
40 13 0.17
ACGTcount: A:0.33, C:0.19, G:0.15, T:0.32
Consensus pattern (39 bp):
AATTATACTGAATGCTTGCTCAAACGAGCATTATCCACT
Found at i:26311813 original size:23 final size:24
Alignment explanation
Indices: 26311787--26311834 Score: 71
Period size: 23 Copynumber: 2.0 Consensus size: 24
26311777 TTCAGAATTT
26311787 GCCACAAAGGC-ATCCCTTTTAGA
1 GCCACAAAGGCTATCCCTTTTAGA
* *
26311810 GCCACAAAGGCTATTCTTTTTAGA
1 GCCACAAAGGCTATCCCTTTTAGA
26311834 G
1 G
26311835 TTTGCCACAA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
23 11 0.50
24 11 0.50
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.27
Consensus pattern (24 bp):
GCCACAAAGGCTATCCCTTTTAGA
Found at i:26322792 original size:16 final size:16
Alignment explanation
Indices: 26322773--26322811 Score: 53
Period size: 16 Copynumber: 2.4 Consensus size: 16
26322763 GAGAAAGGAA
26322773 AAAGAAA-AAAAAGGTT
1 AAAGAAACAAAAA-GTT
*
26322789 AAAGAAACAAACAGTT
1 AAAGAAACAAAAAGTT
26322805 AAAGAAA
1 AAAGAAA
26322812 GATATAGGAC
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
16 17 0.81
17 4 0.19
ACGTcount: A:0.69, C:0.05, G:0.15, T:0.10
Consensus pattern (16 bp):
AAAGAAACAAAAAGTT
Found at i:26325373 original size:34 final size:34
Alignment explanation
Indices: 26325335--26325402 Score: 127
Period size: 34 Copynumber: 2.0 Consensus size: 34
26325325 ATAAGAAATG
*
26325335 GCTATTGAGGGCATTAGTTTAAAATGGAGTTATA
1 GCTATTAAGGGCATTAGTTTAAAATGGAGTTATA
26325369 GCTATTAAGGGCATTAGTTTAAAATGGAGTTATA
1 GCTATTAAGGGCATTAGTTTAAAATGGAGTTATA
26325403 TAGGGAAATC
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 33 1.00
ACGTcount: A:0.34, C:0.06, G:0.25, T:0.35
Consensus pattern (34 bp):
GCTATTAAGGGCATTAGTTTAAAATGGAGTTATA
Found at i:26338490 original size:126 final size:126
Alignment explanation
Indices: 26338252--26338608 Score: 556
Period size: 126 Copynumber: 2.8 Consensus size: 126
26338242 ATTTGTTAAG
26338252 GAAATCGCTCCCACGTGGACGCGCTTTTACTACAGTAGGTCCTGAAAAAATAATTTTGAGTTGAC
1 GAAATCGCTCCCACGTGGACGCGCTTTTACTACAGTAGGTCCTGAAAAAATAATTTTGAGTTGAC
* *
26338317 GTTTTTGAGCAAATAGTATAAAAAAACGCTTCAAGCAGTATGCTTTATCAGAAGAATTTCT
66 GTTTCTGAGCAAATAGTATAAAAAAACGCTTCAAGCAGGATGCTTTATCAGAAGAATTTCT
* * * *
26338378 GAAATCGCTCACACGTTGACACGCTTTTACTACAGTAGGTCTTGAAAAAATAATTTTGAGTTGAC
1 GAAATCGCTCCCACGTGGACGCGCTTTTACTACAGTAGGTCCTGAAAAAATAATTTTGAGTTGAC
* * * * *
26338443 GTTTCTCAACAAATAGTATAAAAAAACGCTTGAAGTAGGATGTTTTATCAGAAGAATTTCT
66 GTTTCTGAGCAAATAGTATAAAAAAACGCTTCAAGCAGGATGCTTTATCAGAAGAATTTCT
* * * *
26338504 AAAATCGCTCCCACGTGGACGCGCTTTTGCTACAGTAGGTCCTGAAAAAATAATTTCGAGTTGAT
1 GAAATCGCTCCCACGTGGACGCGCTTTTACTACAGTAGGTCCTGAAAAAATAATTTTGAGTTGAC
*
26338569 GTTTCTGAGCAAATAGTAT--AAAAACGCTTCAAACAGGATG
66 GTTTCTGAGCAAATAGTATAAAAAAACGCTTCAAGCAGGATG
26338609 AGCGGGAGCC
Statistics
Matches: 207, Mismatches: 24, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
124 18 0.09
126 189 0.91
ACGTcount: A:0.34, C:0.17, G:0.19, T:0.30
Consensus pattern (126 bp):
GAAATCGCTCCCACGTGGACGCGCTTTTACTACAGTAGGTCCTGAAAAAATAATTTTGAGTTGAC
GTTTCTGAGCAAATAGTATAAAAAAACGCTTCAAGCAGGATGCTTTATCAGAAGAATTTCT
Found at i:26338891 original size:24 final size:24
Alignment explanation
Indices: 26338844--26338891 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
26338834 AGGTTCCTGA
* *
26338844 CGGTGCTCCGGCGATCCGTCCCGG
1 CGGTGCTCCGGCGAGCCATCCCGG
*
26338868 CGGTGCTCCGGCGAGCCATTCCGG
1 CGGTGCTCCGGCGAGCCATCCCGG
26338892 TAGCATAGGC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.06, C:0.40, G:0.38, T:0.17
Consensus pattern (24 bp):
CGGTGCTCCGGCGAGCCATCCCGG
Found at i:26339043 original size:85 final size:85
Alignment explanation
Indices: 26338897--26340236 Score: 1302
Period size: 85 Copynumber: 15.7 Consensus size: 85
26338887 TCCGGTAGCA
* * * *
26338897 TAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCACCTTGGTCCTAGGATGTGCGGGAGC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTCGGTGCTTGGATGTGCGGGAGC
* * *
26338962 CCCGGACACCATCGCCAAAC
66 CTCGGACACCATCGGCAACC
* * * * *
26338982 TAAGCCCTTGGTCATGCGGGAGCCTCGGGCGCCATCGGTACCTCGGTGCTTCGATGTGCGGGAGC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTCGGTGCTTGGATGTGCGGGAGC
* *
26339047 CTCGGGCACCATCGGTAACC
66 CTCGGACACCATCGGCAACC
* * * * * *
26339067 TAGGCCCTTTGTCGTGCAGGAGCCTCGGGCACCATCAGCACCTGGGCGCTCGGATGTGCGGGAGC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTCGGTGCTTGGATGTGCGGGAGC
* *
26339132 CTTGGACACCATCGACAACC
66 CTCGGACACCATCGGCAACC
* * * * *
26339152 TAGGCCCTTGGTCGTACGAGAGCCTCGGGCACCATCGGCACCTGGGCGCTCGGATGTGCGGGAGC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTCGGTGCTTGGATGTGCGGGAGC
*
26339217 CTC-GACCACCATTGGCAACC
66 CTCGGA-CACCATCGGCAACC
* * * * *
26339237 TAGGCCCTTGGTCGTGCGAGAGCCACGGGCACCATCGGCACCTGGGCGCTCGGATGTGCGGGAGC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTCGGTGCTTGGATGTGCGGGAGC
* * * *
26339302 ATCGAACACCATCGGGAAAC
66 CTCGGACACCATCGGCAACC
* * * *
26339322 T-GAGCCCCTGGTCATGCGGGAGCCTCGGGCACCATCGGGACCTCGGTGCTTGGATGTGCGGAAG
1 TAG-GCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTCGGTGCTTGGATGTGCGGGAG
* **
26339386 CCAT-GGGCACCATCGGCAAAA
65 CC-TCGGACACCATCGGCAACC
* * *
26339407 TAGGCCCTTGGTCGGGCGAGAGCCTCGGGCACCATCGGCACCT-GGACGCTTGGATGTGCGGGAG
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTCGG-TGCTTGGATGTGCGGGAG
**
26339471 CCTCGGACACTTTCGGCAACC
65 CCTCGGACACCATCGGCAACC
* * ** * *
26339492 TAGGCCCTTGGTCGTGCGGGAGCCTCGAGCACCATCGGCATCTTAGTGCTTGGATATGCGGGAAC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTCGGTGCTTGGATGTGCGGGAGC
* *
26339557 CCCGGGCACCATCGGCAACC
66 CTCGGACACCATCGGCAACC
* * * * * ** **
26339577 TAGGCCCTTGGTCGTGCGAGAGGCTCGAGCACCATCGGTAAACTAAGCCCTTGG-TCGTGCGGGA
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGG-CACCTCGGTGCTTGGAT-GTGCGGGA
* * * * **
26339641 GCTTGGGGCACCATCAGCAAAA
64 GCCTCGGACACCATCGGCAACC
* * * * *
26339663 TAGGCCTTTGGTCGTGCGGGAGCCTCGGCCACCATCGGCACCTAGGTGCTGGGATGTGCAGGAGC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTCGGTGCTTGGATGTGCGGGAGC
*
26339728 CTCGGACACCATCGGCAAAC
66 CTCGGACACCATCGGCAACC
* *
26339748 TAGGCCCTTGGTCGTGTGGGAGCCTCGGGCACCATTGGCACCTCGGTGCTAT-GATGTGCGGGAG
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTCGGTGCT-TGGATGTGCGGGAG
**
26339812 CCTCGGACACTGTCGGCAACC
65 CCTCGGACACCATCGGCAACC
* * * *
26339833 TAGGCCCTTGGTAGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGATGTGCGGGAAC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTCGGTGCTTGGATGTGCGGGAGC
* * * *
26339898 CCCGGGCACTATCGGTAACC
66 CTCGGACACCATCGGCAACC
* * * * * * ** **
26339918 TAGGCCATTGGTCATGCGAGAGGCTCGAGCACCATCGGCAAACTAAGCCCTTGG-TCGTGCGGGA
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTCGGTGCTTGGAT-GTGCGGGA
* * * * **
26339982 GCTTGGGGCACCATCGGTAAAA
64 GCCTCGGACACCATCGGCAACC
** * **
26340004 TAGGCATTTGGTCGTGCGGGAGCCTCGGCCACCATCGGCACCTCGGCCCTTGG-TCGTGCGGGAG
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTCGGTGCTTGGAT-GTGCGGGAG
* * *
26340068 CCTCGGGCACTATCAGC-ACC
65 CCTCGGACACCATCGGCAACC
* ** * * * * *
26340088 TTGGTGGCTCAGAT-GTGCGGGAGCCTCGGGCAACATCGGCACCTCGGTGGCTAGGATGTGC-AG
1 TAGG-CCCT-TGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTCGGT-GCTTGGATGTGCGGG
26340151 AGCCTCGGACACCATCGGCAA-C
63 AGCCTCGGACACCATCGGCAACC
* ** * *
26340173 TTGGTGCTTGGAT-GTGCGGGAGCCTCGGGCACCCATCGGCACCTTGGTGCCTGAGATGTGCGGG
1 TAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCA-CCATCGGCACCTCGGTGCTTG-GATGTGCGGG
26340237 CTAAAGAAAA
Statistics
Matches: 1040, Mismatches: 191, Indels: 47
0.81 0.15 0.04
Matches are distributed among these distances:
83 1 0.00
84 36 0.03
85 856 0.82
86 146 0.14
87 1 0.00
ACGTcount: A:0.17, C:0.30, G:0.34, T:0.18
Consensus pattern (85 bp):
TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTCGGTGCTTGGATGTGCGGGAGC
CTCGGACACCATCGGCAACC
Found at i:26339806 original size:341 final size:340
Alignment explanation
Indices: 26338897--26340236 Score: 1514
Period size: 341 Copynumber: 3.9 Consensus size: 340
26338887 TCCGGTAGCA
* * * ** * *
26338897 TAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCACCTTGGTCCTAGGATGTGCGGGAGC
1 TAGGCCCTTGGTCGTGCGAGAGCCTCGAGCACCATCGGAAACTAAGCCCTTGGATGTGCGGGAGC
** * * * * * *
26338962 CCCGGACACCATCGCCAAACTAAGCCCTTGGTCATGCGGGAGCCTCGGGCGCCATCGGTACCTCG
66 TTCGGACACCATCGGCAAAATAGGCCCTTGGTCATGCGGGAGCCTCGGCCACCATCGGCACCTCG
* * * * *
26339027 GTGCTTCGATGTGCGGGAGCCTCGGGCACCATCGGTAACCTAGGCCCTTTGTCGTGCAGGAGCCT
131 GTGCTTGGATGTGCGGGAGCCTCGGGCACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGAGCCT
* * * * *
26339092 CGGGCACCATCAGCACCTGGGCGCTCGGATGTGCGGGAGCCTTGGACACCATCGACAACCTAGGC
196 CGGGCACCATCGGCACCTCGGCGCTAGGATGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGC
* * * * * * * * *
26339157 CCTTGGTCGTACGAGAGCCTCGGGCACCATCGGCACCTGGGCGCTCGGATGTGCGGGAGCCTCGA
261 CCTTGGTCGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGATGTGCGGGAACCCCGG
* *
26339222 CCACCATTGGCAACC
326 GCACCATCGGCAACC
* * * * ** * *
26339237 TAGGCCCTTGGTCGTGCGAGAGCCACGGGCACCATCGGCACCTGGGCGCTCGGATGTGCGGGAGC
1 TAGGCCCTTGGTCGTGCGAGAGCCTCGAGCACCATCGGAAACTAAGCCCTTGGATGTGCGGGAGC
* * * * * * *
26339302 ATCGAACACCATCGGGAAACT-GAGCCCCTGGTCATGCGGGAGCCTCGGGCACCATCGGGACCTC
66 TTCGGACACCATCGGCAAAATAG-GCCCTTGGTCATGCGGGAGCCTCGGCCACCATCGGCACCTC
* * * *
26339366 GGTGCTTGGATGTGCGGAAGCCAT-GGGCACCATCGGCAAAATAGGCCCTTGGTCGGGCGAGAGC
130 GGTGCTTGGATGTGCGGGAGCC-TCGGGCACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGAGC
* **
26339430 CTCGGGCACCATCGGCACCT-GGACGCTTGGATGTGCGGGAGCCTCGGACACTTTCGGCAACCTA
194 CTCGGGCACCATCGGCACCTCGG-CGCTAGGATGTGCGGGAGCCTCGGACACCATCGGCAACCTA
* * *
26339494 GGCCCTTGGTCGTGCGGGAGCCTCGAGCACCATCGGCATCTTAGTGCTTGGATATGCGGGAACCC
258 GGCCCTTGGTCGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGATGTGCGGGAACCC
26339559 CGGGCACCATCGGCAACC
323 CGGGCACCATCGGCAACC
*
26339577 TAGGCCCTTGGTCGTGCGAGAGGCTCGAGCACCATCGGTAAACTAAGCCCTTGG-TCGTGCGGGA
1 TAGGCCCTTGGTCGTGCGAGAGCCTCGAGCACCATCGG-AAACTAAGCCCTTGGAT-GTGCGGGA
* * * * *
26339641 GCTTGGGGCACCATCAGCAAAATAGGCCTTTGGTCGTGCGGGAGCCTCGGCCACCATCGGCACCT
64 GCTTCGGACACCATCGGCAAAATAGGCCCTTGGTCATGCGGGAGCCTCGGCCACCATCGGCACCT
* * * * *
26339706 AGGTGCTGGGATGTGCAGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTGGTCGTGTGGGAGC
129 CGGTGCTTGGATGTGCGGGAGCCTCGGGCACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGAGC
* * * **
26339771 CTCGGGCACCATTGGCACCTCGGTGCTATGATGTGCGGGAGCCTCGGACACTGTCGGCAACCTAG
194 CTCGGGCACCATCGGCACCTCGGCGCTAGGATGTGCGGGAGCCTCGGACACCATCGGCAACCTAG
*
26339836 GCCCTTGGTAGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGATGTGCGGGAACCCC
259 GCCCTTGGTCGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGATGTGCGGGAACCCC
* *
26339901 GGGCACTATCGGTAACC
324 GGGCACCATCGGCAACC
* * *
26339918 TAGGCCATTGGTCATGCGAGAGGCTCGAGCACCATCGGCAAACTAAGCCCTTGG-TCGTGCGGGA
1 TAGGCCCTTGGTCGTGCGAGAGCCTCGAGCACCATCGG-AAACTAAGCCCTTGGAT-GTGCGGGA
* * * ** *
26339982 GCTTGGGGCACCATCGGTAAAATAGGCATTTGGTCGTGCGGGAGCCTCGGCCACCATCGGCACCT
64 GCTTCGGACACCATCGGCAAAATAGGCCCTTGGTCATGCGGGAGCCTCGGCCACCATCGGCACCT
** * * * * ** * *
26340047 CGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACTATCAGC-ACCTTGGTGGCTCAGAT-GTGCGGG
129 CGGTGCTTGGAT-GTGCGGGAGCCTCGGGCACCATCGGCAAACTAGG-CCCT-TGGTCGTGCGGG
* * *
26340109 AGCCTCGGGCAACATCGGCACCTCGGTGGCTAGGATGTGC-AGAGCCTCGGACACCATCGGCAA-
191 AGCCTCGGGCACCATCGGCACCTCGG-CGCTAGGATGTGCGGGAGCCTCGGACACCATCGGCAAC
* ** * *
26340172 CTTGGTGCTTGGAT-GTGCGGGAGCCTCGGGCACCCATCGGCACCTTGGTGCCTGAGATGTGCGG
255 CTAGGCCCTTGG-TCGTGCGGGAGCCTCGAGCA-CCATCGGCACCTTGGTGCTTG-GATGTGCGG
26340236 G
317 G
26340237 CTAAAGAAAA
Statistics
Matches: 868, Mismatches: 117, Indels: 28
0.86 0.12 0.03
Matches are distributed among these distances:
339 2 0.00
340 360 0.41
341 480 0.55
342 26 0.03
ACGTcount: A:0.17, C:0.30, G:0.34, T:0.18
Consensus pattern (340 bp):
TAGGCCCTTGGTCGTGCGAGAGCCTCGAGCACCATCGGAAACTAAGCCCTTGGATGTGCGGGAGC
TTCGGACACCATCGGCAAAATAGGCCCTTGGTCATGCGGGAGCCTCGGCCACCATCGGCACCTCG
GTGCTTGGATGTGCGGGAGCCTCGGGCACCATCGGCAAACTAGGCCCTTGGTCGTGCGGGAGCCT
CGGGCACCATCGGCACCTCGGCGCTAGGATGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGC
CCTTGGTCGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGATGTGCGGGAACCCCGG
GCACCATCGGCAACC
Found at i:26340115 original size:43 final size:42
Alignment explanation
Indices: 26340017--26340236 Score: 230
Period size: 42 Copynumber: 5.2 Consensus size: 42
26340007 GCATTTGGTC
* * ** * *
26340017 GTGCGGGAGCCTCGGCCACCATCGGCACCTCGG-CCCTTGGT
1 GTGCGGGAGCCTCGGGCACCATCGGCACCTTGGTGGCTAGAT
* *
26340058 CGTGCGGGAGCCTCGGGCACTATCAGCACCTTGGTGGCTCAGAT
1 -GTGCGGGAGCCTCGGGCACCATCGGCACCTTGGTGGCT-AGAT
* *
26340102 GTGCGGGAGCCTCGGGCAACATCGGCACCTCGGTGGCTAGGAT
1 GTGCGGGAGCCTCGGGCACCATCGGCACCTTGGTGGCTA-GAT
* * * *
26340145 GTGC-AGAGCCTCGGACACCATCGGCAACTTGGT-GCTTGGAT
1 GTGCGGGAGCCTCGGGCACCATCGGCACCTTGGTGGC-TAGAT
*
26340186 GTGCGGGAGCCTCGGGCACCCATCGGCACCTTGGTGCCTGAGAT
1 GTGCGGGAGCCTCGGGCA-CCATCGGCACCTTGGTGGCT-AGAT
26340230 GTGCGGG
1 GTGCGGG
26340237 CTAAAGAAAA
Statistics
Matches: 147, Mismatches: 23, Indels: 14
0.80 0.12 0.08
Matches are distributed among these distances:
41 9 0.06
42 66 0.45
43 59 0.40
44 13 0.09
ACGTcount: A:0.15, C:0.30, G:0.36, T:0.19
Consensus pattern (42 bp):
GTGCGGGAGCCTCGGGCACCATCGGCACCTTGGTGGCTAGAT
Found at i:26342890 original size:49 final size:49
Alignment explanation
Indices: 26342833--26343099 Score: 473
Period size: 49 Copynumber: 5.5 Consensus size: 49
26342823 TAAGAATATT
* *
26342833 AACTATTTTGTATTTTATTAAATGAAATAATATCAAAATATTCAAAATA
1 AACTATTTTGTATTTTATTACATCAAATAATATCAAAATATTCAAAATA
* *
26342882 AACTATTTTGTATTTTATTATATCAAATAATATCAAATTATTCAAAATA
1 AACTATTTTGTATTTTATTACATCAAATAATATCAAAATATTCAAAATA
*
26342931 AACTATTTTGTATTTTATTACATCAAATAATATCAAATTATTCAAAATA
1 AACTATTTTGTATTTTATTACATCAAATAATATCAAAATATTCAAAATA
*
26342980 AACTATTTTGTATTTTATTACATCAAATAATATC-AAATATTCAAAGTA
1 AACTATTTTGTATTTTATTACATCAAATAATATCAAAATATTCAAAATA
26343028 AACTATTTTGTATTTTATTACATCAAATAATATCAAAATATTCAAAATA
1 AACTATTTTGTATTTTATTACATCAAATAATATCAAAATATTCAAAATA
26343077 AACTATTTTGTATTTTATTACAT
1 AACTATTTTGTATTTTATTACAT
26343100 TAATATAAAC
Statistics
Matches: 210, Mismatches: 7, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
48 46 0.22
49 164 0.78
ACGTcount: A:0.45, C:0.09, G:0.03, T:0.43
Consensus pattern (49 bp):
AACTATTTTGTATTTTATTACATCAAATAATATCAAAATATTCAAAATA
Found at i:26342958 original size:29 final size:29
Alignment explanation
Indices: 26342926--26343009 Score: 78
Period size: 29 Copynumber: 3.2 Consensus size: 29
26342916 AAATTATTCA
26342926 AAATAAACTATTTTGTATTTTATTACATC
1 AAATAAACTATTTTGTATTTTATTACATC
* **
26342955 AAAT-AA-TA---T-CAAATTATT-CA--
1 AAATAAACTATTTTGTATTTTATTACATC
26342975 AAATAAACTATTTTGTATTTTATTACATC
1 AAATAAACTATTTTGTATTTTATTACATC
26343004 AAATAA
1 AAATAA
26343010 TATCAAATAT
Statistics
Matches: 40, Mismatches: 6, Indels: 18
0.62 0.09 0.28
Matches are distributed among these distances:
20 4 0.10
21 2 0.05
22 4 0.10
23 6 0.15
24 1 0.03
25 1 0.03
26 6 0.15
27 4 0.10
28 2 0.05
29 10 0.25
ACGTcount: A:0.45, C:0.10, G:0.02, T:0.43
Consensus pattern (29 bp):
AAATAAACTATTTTGTATTTTATTACATC
Found at i:26343248 original size:21 final size:22
Alignment explanation
Indices: 26343224--26343279 Score: 62
Period size: 21 Copynumber: 2.6 Consensus size: 22
26343214 AGCTTTCGGC
*
26343224 GGGGGTTGTGGTTGC-TCCGGT
1 GGGGGTTCTGGTTGCATCCGGT
*
26343245 GGGGATTCTGGTT-CATCCGGT
1 GGGGGTTCTGGTTGCATCCGGT
* *
26343266 AGGGGATCTGGTTG
1 GGGGGTTCTGGTTG
26343280 TCGGTGTTGG
Statistics
Matches: 28, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
20 1 0.04
21 27 0.96
ACGTcount: A:0.07, C:0.14, G:0.46, T:0.32
Consensus pattern (22 bp):
GGGGGTTCTGGTTGCATCCGGT
Found at i:26345410 original size:11 final size:11
Alignment explanation
Indices: 26345394--26345420 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
26345384 TTTAAATAGA
26345394 AATTTGAGAGG
1 AATTTGAGAGG
26345405 AATTTGAGAGG
1 AATTTGAGAGG
26345416 AATTT
1 AATTT
26345421 AAGATAATAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.37, C:0.00, G:0.30, T:0.33
Consensus pattern (11 bp):
AATTTGAGAGG
Found at i:26345422 original size:34 final size:33
Alignment explanation
Indices: 26345384--26345447 Score: 76
Period size: 34 Copynumber: 1.9 Consensus size: 33
26345374 TTGAAGCTCT
* *
26345384 TTTAA-ATAGAAATTTGAGAGGAATTTGAGAGGAA
1 TTTAAGATA-AAATTAGAGA-GAAATTGAGAGGAA
*
26345418 TTTAAGATAATATTAGAGAGAAATTGAGAG
1 TTTAAGATAAAATTAGAGAGAAATTGAGAG
26345448 AAAGGATTTA
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
33 10 0.38
34 13 0.50
35 3 0.12
ACGTcount: A:0.45, C:0.00, G:0.25, T:0.30
Consensus pattern (33 bp):
TTTAAGATAAAATTAGAGAGAAATTGAGAGGAA
Found at i:26362324 original size:14 final size:15
Alignment explanation
Indices: 26362300--26362328 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
26362290 ATAAAGTTGA
26362300 AGGGTTTTAGGGTTT
1 AGGGTTTTAGGGTTT
26362315 AGGG-TTTAGGGTTT
1 AGGGTTTTAGGGTTT
26362329 GAGATTATTG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 10 0.71
15 4 0.29
ACGTcount: A:0.14, C:0.00, G:0.41, T:0.45
Consensus pattern (15 bp):
AGGGTTTTAGGGTTT
Found at i:26366225 original size:21 final size:21
Alignment explanation
Indices: 26366192--26366244 Score: 61
Period size: 21 Copynumber: 2.5 Consensus size: 21
26366182 CATTGTTTCT
* * *
26366192 AATCTTACTGCTACAATATCC
1 AATCTCACCGCTACAATAACC
* *
26366213 AATCTCACCGCTACAGTAACT
1 AATCTCACCGCTACAATAACC
26366234 AATCTCACCGC
1 AATCTCACCGC
26366245 CACTGCTGTT
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.32, C:0.34, G:0.08, T:0.26
Consensus pattern (21 bp):
AATCTCACCGCTACAATAACC
Found at i:26381843 original size:17 final size:16
Alignment explanation
Indices: 26381821--26381858 Score: 51
Period size: 15 Copynumber: 2.4 Consensus size: 16
26381811 AATAAAATGA
26381821 TGTTCAAAGAAAATTTT
1 TGTTC-AAGAAAATTTT
*
26381838 TGTTC-ATAAAATTTT
1 TGTTCAAGAAAATTTT
26381853 TGTTCA
1 TGTTCA
26381859 TAAGTTAGCT
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
15 14 0.74
17 5 0.26
ACGTcount: A:0.34, C:0.08, G:0.11, T:0.47
Consensus pattern (16 bp):
TGTTCAAGAAAATTTT
Found at i:26381850 original size:15 final size:15
Alignment explanation
Indices: 26381830--26381861 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
26381820 ATGTTCAAAG
26381830 AAAATTTTTGTTCAT
1 AAAATTTTTGTTCAT
26381845 AAAATTTTTGTTCAT
1 AAAATTTTTGTTCAT
26381860 AA
1 AA
26381862 GTTAGCTCAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.38, C:0.06, G:0.06, T:0.50
Consensus pattern (15 bp):
AAAATTTTTGTTCAT
Found at i:26387329 original size:50 final size:50
Alignment explanation
Indices: 26387192--26387381 Score: 164
Period size: 50 Copynumber: 3.7 Consensus size: 50
26387182 TTTTCTGTAC
* ** * ** * *
26387192 TGCCAATGTCATACCCCAGATATGGTCTTACATGGGAGTTCTCATATCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCCCATCTCGG
* * * **
26387242 TGCCCATGCCGTGTCCTAGACATGGTCTTACGGGGGACCTCCCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCCCATCTCGG
* * * *
26387292 TGCCAACGCCATGTCCCAGACATGGTCTTATATGGGACCTCTCATAATCTCAATGA
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTC-C--CATCTC---GG
*
26387348 TGCCAATGTCATGTCCCAGACATGGTCTTACATG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATG
26387382 AGTTCTCTTT
Statistics
Matches: 109, Mismatches: 25, Indels: 6
0.78 0.18 0.04
Matches are distributed among these distances:
50 71 0.65
51 1 0.01
53 5 0.05
56 32 0.29
ACGTcount: A:0.22, C:0.28, G:0.22, T:0.27
Consensus pattern (50 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCCCATCTCGG
Found at i:26387759 original size:30 final size:29
Alignment explanation
Indices: 26387725--26387785 Score: 70
Period size: 30 Copynumber: 2.1 Consensus size: 29
26387715 CCTTGACTCG
26387725 AACTTTGGAAAAATTACGA-TTTTGCCCCTA
1 AACTTTGGAAAAATTAC-ACTTTTG-CCCTA
* * *
26387755 AACTTTTGCATAATTACACTTTTGCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCTA
26387784 AA
1 AA
26387786 GCTCGGAAAT
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
29 8 0.30
30 19 0.70
ACGTcount: A:0.33, C:0.21, G:0.10, T:0.36
Consensus pattern (29 bp):
AACTTTGGAAAAATTACACTTTTGCCCTA
Found at i:26391216 original size:23 final size:23
Alignment explanation
Indices: 26391189--26391264 Score: 102
Period size: 23 Copynumber: 3.4 Consensus size: 23
26391179 GGCTTTGCCG
26391189 ATCAGGCACTTTATGTGTCGTAT
1 ATCAGGCACTTTATGTGTCGTAT
26391212 ATCAGGCACTTTATGTGTCGTAT
1 ATCAGGCACTTTATGTGTCGTAT
* * **
26391235 TTCAGGCACCTCGTGTGTCG--T
1 ATCAGGCACTTTATGTGTCGTAT
26391256 ATCAGGCAC
1 ATCAGGCAC
26391265 CTCGCATTCG
Statistics
Matches: 48, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
21 9 0.19
23 39 0.81
ACGTcount: A:0.20, C:0.22, G:0.24, T:0.34
Consensus pattern (23 bp):
ATCAGGCACTTTATGTGTCGTAT
Found at i:26391260 original size:21 final size:21
Alignment explanation
Indices: 26391189--26391297 Score: 87
Period size: 23 Copynumber: 5.1 Consensus size: 21
26391179 GGCTTTGCCG
* *
26391189 ATCAGGCACTTTATGTGTCGTAT
1 ATCAGGCACCTCATGTGTCG--T
* *
26391212 ATCAGGCACTTTATGTGTCGT
1 ATCAGGCACCTCATGTGTCGT
*
26391233 ATTTCAGGCACCTCGTGTGTCGT
1 A--TCAGGCACCTCATGTGTCGT
***
26391256 ATCAGGCACCTCGCAT-TCGT
1 ATCAGGCACCTCATGTGTCGT
*
26391276 ATCAGGCA-CTTATGTGTCGT
1 ATCAGGCACCTCATGTGTCGT
26391296 AT
1 AT
26391298 ACTAATCAGG
Statistics
Matches: 74, Mismatches: 9, Indels: 9
0.80 0.10 0.10
Matches are distributed among these distances:
19 3 0.04
20 18 0.24
21 15 0.20
23 38 0.51
ACGTcount: A:0.19, C:0.23, G:0.23, T:0.35
Consensus pattern (21 bp):
ATCAGGCACCTCATGTGTCGT
Found at i:26391277 original size:20 final size:21
Alignment explanation
Indices: 26391227--26391284 Score: 73
Period size: 20 Copynumber: 2.7 Consensus size: 21
26391217 GCACTTTATG
**
26391227 TGTCGTATTTCAGGCACCTCGTG
1 TGTCGTA--TCAGGCACCTCGCA
26391250 TGTCGTATCAGGCACCTCGCA
1 TGTCGTATCAGGCACCTCGCA
26391271 T-TCGTATCAGGCAC
1 TGTCGTATCAGGCAC
26391285 TTATGTGTCG
Statistics
Matches: 33, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
20 13 0.39
21 13 0.39
23 7 0.21
ACGTcount: A:0.17, C:0.29, G:0.24, T:0.29
Consensus pattern (21 bp):
TGTCGTATCAGGCACCTCGCA
Found at i:26391671 original size:12 final size:12
Alignment explanation
Indices: 26391654--26391679 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
26391644 ATAAAAGAAC
26391654 GAATTGATAATG
1 GAATTGATAATG
26391666 GAATTGATAATG
1 GAATTGATAATG
26391678 GA
1 GA
26391680 TGAGTTATTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.27, T:0.31
Consensus pattern (12 bp):
GAATTGATAATG
Found at i:26394898 original size:30 final size:29
Alignment explanation
Indices: 26394846--26394916 Score: 79
Period size: 30 Copynumber: 2.4 Consensus size: 29
26394836 TCATTAGGGT
* * * *
26394846 TTATCAGGCACTATGTGCCGGTGATCATA
1 TTATCAGGTACTATATACCGGTGACCATA
*
26394875 GTTATCAGGTACTATATATCGGTGACCATA
1 -TTATCAGGTACTATATACCGGTGACCATA
*
26394905 TTATCAAGTACT
1 TTATCAGGTACT
26394917 TTGTATCAGT
Statistics
Matches: 35, Mismatches: 6, Indels: 1
0.83 0.14 0.02
Matches are distributed among these distances:
29 11 0.31
30 24 0.69
ACGTcount: A:0.28, C:0.18, G:0.20, T:0.34
Consensus pattern (29 bp):
TTATCAGGTACTATATACCGGTGACCATA
Found at i:26395008 original size:29 final size:28
Alignment explanation
Indices: 26394937--26395009 Score: 67
Period size: 29 Copynumber: 2.5 Consensus size: 28
26394927 GTTCATGTTG
26394937 TATCAAGCACTATGTGCCAATGTTATATT
1 TATCAAG-ACTATGTGCCAATGTTATATT
*** *
26394966 TATC-AGACATTATGTGCTGGTGTTATTTT
1 TATCAAGAC--TATGTGCCAATGTTATATT
26394995 TATCAAGTACTATGT
1 TATCAAG-ACTATGT
26395010 ACCGATGGTG
Statistics
Matches: 36, Mismatches: 4, Indels: 8
0.75 0.08 0.17
Matches are distributed among these distances:
27 2 0.06
28 2 0.06
29 28 0.78
30 2 0.06
31 2 0.06
ACGTcount: A:0.27, C:0.14, G:0.16, T:0.42
Consensus pattern (28 bp):
TATCAAGACTATGTGCCAATGTTATATT
Found at i:26395944 original size:35 final size:35
Alignment explanation
Indices: 26395898--26395968 Score: 142
Period size: 35 Copynumber: 2.0 Consensus size: 35
26395888 GACCGGAATG
26395898 AAGAAACCTTAAGACTGCCTTCAATGTCGCGACAT
1 AAGAAACCTTAAGACTGCCTTCAATGTCGCGACAT
26395933 AAGAAACCTTAAGACTGCCTTCAATGTCGCGACAT
1 AAGAAACCTTAAGACTGCCTTCAATGTCGCGACAT
26395968 A
1 A
26395969 GTCTGAGGGT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 36 1.00
ACGTcount: A:0.35, C:0.25, G:0.17, T:0.23
Consensus pattern (35 bp):
AAGAAACCTTAAGACTGCCTTCAATGTCGCGACAT
Found at i:26405347 original size:41 final size:41
Alignment explanation
Indices: 26405290--26405373 Score: 168
Period size: 41 Copynumber: 2.0 Consensus size: 41
26405280 ATTTATTTTC
26405290 AATTGTTCTTTGTCAAGAGATCTAATTTGTGGAGATTATCA
1 AATTGTTCTTTGTCAAGAGATCTAATTTGTGGAGATTATCA
26405331 AATTGTTCTTTGTCAAGAGATCTAATTTGTGGAGATTATCA
1 AATTGTTCTTTGTCAAGAGATCTAATTTGTGGAGATTATCA
26405372 AA
1 AA
26405374 CTTTATGGAT
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 43 1.00
ACGTcount: A:0.31, C:0.10, G:0.19, T:0.40
Consensus pattern (41 bp):
AATTGTTCTTTGTCAAGAGATCTAATTTGTGGAGATTATCA
Found at i:26411614 original size:42 final size:42
Alignment explanation
Indices: 26411550--26411641 Score: 139
Period size: 42 Copynumber: 2.2 Consensus size: 42
26411540 TGAATGTCCA
* * * *
26411550 CACGACCTGAGACACGGGCGTGTCTCTTGACCGTGTGAGATG
1 CACGGCCTAAGACACGGACGTGTCTCTTGACCGTGTGAGAAG
*
26411592 CACGGCCTAAGACACGGACGTGTCTCTTGACCGTGTTAGAAG
1 CACGGCCTAAGACACGGACGTGTCTCTTGACCGTGTGAGAAG
26411634 CACGGCCT
1 CACGGCCT
26411642 GGCCATAAGG
Statistics
Matches: 45, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
42 45 1.00
ACGTcount: A:0.21, C:0.28, G:0.30, T:0.21
Consensus pattern (42 bp):
CACGGCCTAAGACACGGACGTGTCTCTTGACCGTGTGAGAAG
Found at i:26412376 original size:16 final size:15
Alignment explanation
Indices: 26412314--26412388 Score: 51
Period size: 16 Copynumber: 4.8 Consensus size: 15
26412304 TTCTAATATA
*
26412314 CTGAAACTTTAGATT
1 CTGAAACTATAGATT
* * *
26412329 GTGAAAACAAATAGACT
1 CTG-AAAC-TATAGATT
* * *
26412346 GTGAAATTTTAGATT
1 CTGAAACTATAGATT
26412361 CTGAAAACTATAGATT
1 CTG-AAACTATAGATT
*
26412377 TTGAAACTATAG
1 CTGAAACTATAG
26412389 TGGAACTGTG
Statistics
Matches: 45, Mismatches: 12, Indels: 6
0.71 0.19 0.10
Matches are distributed among these distances:
15 18 0.40
16 19 0.42
17 8 0.18
ACGTcount: A:0.41, C:0.09, G:0.16, T:0.33
Consensus pattern (15 bp):
CTGAAACTATAGATT
Found at i:26412383 original size:15 final size:16
Alignment explanation
Indices: 26412355--26412388 Score: 52
Period size: 15 Copynumber: 2.2 Consensus size: 16
26412345 TGTGAAATTT
26412355 TAGATTCTGAAAACTA
1 TAGATTCTGAAAACTA
*
26412371 TAGATTTTG-AAACTA
1 TAGATTCTGAAAACTA
26412386 TAG
1 TAG
26412389 TGGAACTGTG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 9 0.53
16 8 0.47
ACGTcount: A:0.41, C:0.09, G:0.15, T:0.35
Consensus pattern (16 bp):
TAGATTCTGAAAACTA
Found at i:26429941 original size:61 final size:57
Alignment explanation
Indices: 26429850--26429983 Score: 153
Period size: 59 Copynumber: 2.3 Consensus size: 57
26429840 TCCAAAAATA
* *
26429850 ATATTATTTTAATAAACTTAATATTTAATTTAATAT-TATTTTATCTTGTAGGTAAATATT
1 ATATTAATTTAATAAACTTAATATTAAATTTAATATATATTTT-TCTTG-A--TAAATATT
* * *
26429910 CTATTAATTTAATAAGATTTAATATTAAATTTAATATAATATTTTTCTTGATAAGTATT
1 ATATTAATTTAATAA-ACTTAATATTAAATTTAATAT-ATATTTTTCTTGATAAATATT
*
26429969 ATATAAATTTAATAA
1 ATATTAATTTAATAA
26429984 TAAAGTAATT
Statistics
Matches: 64, Mismatches: 7, Indels: 7
0.82 0.09 0.09
Matches are distributed among these distances:
59 20 0.31
60 13 0.20
61 20 0.31
62 5 0.08
63 6 0.09
ACGTcount: A:0.42, C:0.03, G:0.04, T:0.51
Consensus pattern (57 bp):
ATATTAATTTAATAAACTTAATATTAAATTTAATATATATTTTTCTTGATAAATATT
Found at i:26431506 original size:16 final size:16
Alignment explanation
Indices: 26431487--26431519 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
26431477 CCTTAAGTAA
26431487 TAGCGTGATAAAGTTT
1 TAGCGTGATAAAGTTT
26431503 TAGCGTGATAAAGTTT
1 TAGCGTGATAAAGTTT
26431519 T
1 T
26431520 GAGTCGATTC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.30, C:0.06, G:0.24, T:0.39
Consensus pattern (16 bp):
TAGCGTGATAAAGTTT
Found at i:26436997 original size:17 final size:17
Alignment explanation
Indices: 26436980--26437012 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
26436970 ATAATATTAT
26436980 TTTAA-TAAATTTAATA
1 TTTAATTAAATTTAATA
*
26436996 TTTAATTTAATTTAATA
1 TTTAATTAAATTTAATA
26437013 CTTATCTTAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 5 0.33
17 10 0.67
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (17 bp):
TTTAATTAAATTTAATA
Found at i:26437006 original size:21 final size:20
Alignment explanation
Indices: 26436966--26437006 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
26436956 TAAGTATTCC
*
26436966 AAATATAATATTATTTTAAT
1 AAATATAATATTAATTTAAT
*
26436986 AAATTTAATATTTAATTTAAT
1 AAATATAATA-TTAATTTAAT
26437007 TTAATACTTA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 9 0.50
21 9 0.50
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (20 bp):
AAATATAATATTAATTTAAT
Found at i:26437839 original size:17 final size:19
Alignment explanation
Indices: 26437810--26437849 Score: 50
Period size: 17 Copynumber: 2.2 Consensus size: 19
26437800 CATCTTTATA
26437810 ACATGATACTATA-A-TCC
1 ACATGATACTATACATTCC
26437827 ACATGAT-CATATACATTCC
1 ACATGATAC-TATACATTCC
26437846 ACAT
1 ACAT
26437850 AATAATACAA
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
16 1 0.05
17 11 0.55
18 1 0.05
19 7 0.35
ACGTcount: A:0.40, C:0.25, G:0.05, T:0.30
Consensus pattern (19 bp):
ACATGATACTATACATTCC
Found at i:26446101 original size:12 final size:12
Alignment explanation
Indices: 26446084--26446135 Score: 59
Period size: 12 Copynumber: 4.3 Consensus size: 12
26446074 CCTTTTGAAA
*
26446084 CTTCCTCTGGAT
1 CTTCCTCAGGAT
*
26446096 CTTCCTCAAGAT
1 CTTCCTCAGGAT
* *
26446108 CTTCTTCGGGAT
1 CTTCCTCAGGAT
*
26446120 CTTCCTCAAGAT
1 CTTCCTCAGGAT
26446132 CTTC
1 CTTC
26446136 TTTGTGATCT
Statistics
Matches: 32, Mismatches: 8, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
12 32 1.00
ACGTcount: A:0.15, C:0.33, G:0.13, T:0.38
Consensus pattern (12 bp):
CTTCCTCAGGAT
Found at i:26446119 original size:24 final size:24
Alignment explanation
Indices: 26446092--26446151 Score: 102
Period size: 24 Copynumber: 2.5 Consensus size: 24
26446082 AACTTCCTCT
26446092 GGATCTTCCTCAAGATCTTCTTCG
1 GGATCTTCCTCAAGATCTTCTTCG
*
26446116 GGATCTTCCTCAAGATCTTCTTTG
1 GGATCTTCCTCAAGATCTTCTTCG
*
26446140 TGATCTTCCTCA
1 GGATCTTCCTCA
26446152 TCTTTTGATT
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
24 34 1.00
ACGTcount: A:0.17, C:0.28, G:0.15, T:0.40
Consensus pattern (24 bp):
GGATCTTCCTCAAGATCTTCTTCG
Found at i:26453350 original size:40 final size:40
Alignment explanation
Indices: 26453292--26453368 Score: 102
Period size: 40 Copynumber: 1.9 Consensus size: 40
26453282 CATCATACAT
* * * *
26453292 GCCAATCTGGTTAGCAACTATCATGCCCT-ACTAGTGGCCC
1 GCCAACCTGATTAACAACTAACATG-CCTAACTAGTGGCCC
26453332 GCCAACCTGATTAACAACTAACATGCCTAACTAGTGG
1 GCCAACCTGATTAACAACTAACATGCCTAACTAGTGG
26453369 TCCATTATAT
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
39 3 0.09
40 29 0.91
ACGTcount: A:0.29, C:0.30, G:0.18, T:0.23
Consensus pattern (40 bp):
GCCAACCTGATTAACAACTAACATGCCTAACTAGTGGCCC
Found at i:26455156 original size:42 final size:42
Alignment explanation
Indices: 26455087--26455225 Score: 122
Period size: 42 Copynumber: 3.3 Consensus size: 42
26455077 TCGCTCATAC
* *
26455087 GAGCTTCTATTTAA-CTTATATGAGTTTCCATTCAGCTCTATT
1 GAGCTTCTATTTAACCCT-TATGGGTTTCCATTCAGCTCTATT
* * * *
26455129 GAGCTTCTGTTTAACCCTTATGGGTTTCCGTTCTGCTCT-TAC
1 GAGCTTCTATTTAACCCTTATGGGTTTCCATTCAGCTCTAT-T
** * * * *
26455171 GAGCTTCCGTTCATCCCTTATGGGTTTCTATTTAGCTCTCA-T
1 GAGCTTCTATTTAACCCTTATGGGTTTCCATTCAGCTCT-ATT
26455213 GAGCTTCTATTTA
1 GAGCTTCTATTTA
26455226 GCCTTCGAGC
Statistics
Matches: 76, Mismatches: 17, Indels: 8
0.75 0.17 0.08
Matches are distributed among these distances:
41 1 0.01
42 73 0.96
43 2 0.03
ACGTcount: A:0.17, C:0.23, G:0.16, T:0.44
Consensus pattern (42 bp):
GAGCTTCTATTTAACCCTTATGGGTTTCCATTCAGCTCTATT
Found at i:26461398 original size:29 final size:29
Alignment explanation
Indices: 26461357--26461419 Score: 110
Period size: 29 Copynumber: 2.2 Consensus size: 29
26461347 AAAACTTCTC
*
26461357 ACTC-TATTCACCAAGAAAGAATCACTAG
1 ACTCGTATTAACCAAGAAAGAATCACTAG
26461385 ACTCGTATTAACCAAGAAAGAATCACTAG
1 ACTCGTATTAACCAAGAAAGAATCACTAG
26461414 ACTCGT
1 ACTCGT
26461420 GAAAGATGGT
Statistics
Matches: 33, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
28 4 0.12
29 29 0.88
ACGTcount: A:0.41, C:0.24, G:0.13, T:0.22
Consensus pattern (29 bp):
ACTCGTATTAACCAAGAAAGAATCACTAG
Found at i:26466237 original size:45 final size:46
Alignment explanation
Indices: 26466168--26466285 Score: 213
Period size: 45 Copynumber: 2.6 Consensus size: 46
26466158 AAGATTACTC
26466168 GTTTGATTAAGTGTTTATTACTTTAGATGAATAAAAAAGGTAC-AT
1 GTTTGATTAAGTGTTTATTACTTTAGATGAATAAAAAAGGTACAAT
*
26466213 GTTTTATTAAGTGTTTATTACTTTAGATGAATAAAAAAGGTACAAT
1 GTTTGATTAAGTGTTTATTACTTTAGATGAATAAAAAAGGTACAAT
26466259 -TTTGATTAAGTGTTTATTACTTTAGAT
1 GTTTGATTAAGTGTTTATTACTTTAGAT
26466286 ATCATAACCA
Statistics
Matches: 70, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
45 68 0.97
46 2 0.03
ACGTcount: A:0.36, C:0.04, G:0.16, T:0.44
Consensus pattern (46 bp):
GTTTGATTAAGTGTTTATTACTTTAGATGAATAAAAAAGGTACAAT
Found at i:26469996 original size:2 final size:2
Alignment explanation
Indices: 26469989--26470013 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
26469979 ACAAATCATT
26469989 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
26470014 TTAAATTTAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:26470907 original size:48 final size:48
Alignment explanation
Indices: 26470851--26471036 Score: 246
Period size: 48 Copynumber: 3.9 Consensus size: 48
26470841 AAATTTCTCA
* * * * *
26470851 GTGGCCTGCACACAGTCCGTACCACCTTTGTGTAATAACAGATTCTCG
1 GTGGCCTGCACACAGTCCGTGCCACCCTTGTATCATAACAGATTATCG
* * * * *
26470899 GTGGCCTGCACATAGTTCGTGCCACCCTTGTATCTTAACAGGTTATTG
1 GTGGCCTGCACACAGTCCGTGCCACCCTTGTATCATAACAGATTATCG
* * *
26470947 GTGGCCTGCACACAGTCCTTGCCACCCTTGTATCATAATAGAATATCG
1 GTGGCCTGCACACAGTCCGTGCCACCCTTGTATCATAACAGATTATCG
*
26470995 GTGGCCTGCACACAGTCCGTGCCACCCTTGTGTCATAACAGA
1 GTGGCCTGCACACAGTCCGTGCCACCCTTGTATCATAACAGA
26471037 ATATTGATGC
Statistics
Matches: 117, Mismatches: 21, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
48 117 1.00
ACGTcount: A:0.22, C:0.29, G:0.22, T:0.27
Consensus pattern (48 bp):
GTGGCCTGCACACAGTCCGTGCCACCCTTGTATCATAACAGATTATCG
Found at i:26474965 original size:25 final size:25
Alignment explanation
Indices: 26474935--26475039 Score: 88
Period size: 25 Copynumber: 4.2 Consensus size: 25
26474925 GCACTCTCTT
*
26474935 GAGCCATATAATGGGAAGCTCATGT
1 GAGCCATATAATGGGAAGCTCATGA
* * * **
26474960 GAGCCATGTAATAGGAAGCTTATCC
1 GAGCCATATAATGGGAAGCTCATGA
** * *
26474985 GAGCTTTATAACGGGAAGCTCATAA
1 GAGCCATATAATGGGAAGCTCATGA
*
26475010 GAGTCATATTAA--GGAAGCTCATGA
1 GAGCCATA-TAATGGGAAGCTCATGA
26475034 GAGCCA
1 GAGCCA
26475040 ATATCGGGTA
Statistics
Matches: 61, Mismatches: 18, Indels: 3
0.74 0.22 0.04
Matches are distributed among these distances:
24 16 0.26
25 42 0.69
26 3 0.05
ACGTcount: A:0.34, C:0.17, G:0.26, T:0.23
Consensus pattern (25 bp):
GAGCCATATAATGGGAAGCTCATGA
Found at i:26488655 original size:6 final size:6
Alignment explanation
Indices: 26488609--26488654 Score: 76
Period size: 6 Copynumber: 7.8 Consensus size: 6
26488599 AGCTAGATCA
*
26488609 CACATC CACATC CACATC CACATC CACATC CACATC C-CATA CACAT
1 CACATC CACATC CACATC CACATC CACATC CACATC CACATC CACAT
26488655 AAACTACGAC
Statistics
Matches: 38, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
5 4 0.11
6 34 0.89
ACGTcount: A:0.35, C:0.48, G:0.00, T:0.17
Consensus pattern (6 bp):
CACATC
Found at i:26491945 original size:18 final size:18
Alignment explanation
Indices: 26491917--26491960 Score: 54
Period size: 18 Copynumber: 2.5 Consensus size: 18
26491907 AAATTAAAAT
**
26491917 AAAAT-TATATATTTTTA
1 AAAATATATATAAATTTA
*
26491934 AATATATATATAAATTTA
1 AAAATATATATAAATTTA
26491952 AAAATATAT
1 AAAATATAT
26491961 CGAAAACTAA
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
17 4 0.18
18 18 0.82
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (18 bp):
AAAATATATATAAATTTA
Found at i:26492510 original size:20 final size:21
Alignment explanation
Indices: 26492475--26492514 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 21
26492465 AGTTATATTT
*
26492475 ATATTTAATTTAATTTTTAAA
1 ATATTTAATGTAATTTTTAAA
26492496 ATATTTAA-GTAATTTTTAA
1 ATATTTAATGTAATTTTTAA
26492515 TTTTTTGTTA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 10 0.56
21 8 0.44
ACGTcount: A:0.42, C:0.00, G:0.03, T:0.55
Consensus pattern (21 bp):
ATATTTAATGTAATTTTTAAA
Found at i:26493501 original size:29 final size:29
Alignment explanation
Indices: 26493466--26493535 Score: 117
Period size: 27 Copynumber: 2.5 Consensus size: 29
26493456 ACCTCATATT
26493466 TAATGGTTTTTTTTATGTAAATAAAATTA
1 TAATGGTTTTTTTTATGTAAATAAAATTA
26493495 TAATGG--TTTTTTATGTAAATAAAATTA
1 TAATGGTTTTTTTTATGTAAATAAAATTA
*
26493522 TAATGTTTTTTTTT
1 TAATGGTTTTTTTT
26493536 TATTTTGCAA
Statistics
Matches: 38, Mismatches: 1, Indels: 4
0.88 0.02 0.09
Matches are distributed among these distances:
27 26 0.68
29 12 0.32
ACGTcount: A:0.34, C:0.00, G:0.10, T:0.56
Consensus pattern (29 bp):
TAATGGTTTTTTTTATGTAAATAAAATTA
Found at i:26496538 original size:18 final size:20
Alignment explanation
Indices: 26496515--26496558 Score: 65
Period size: 18 Copynumber: 2.3 Consensus size: 20
26496505 TTTCTTCTTC
26496515 TTCTTCTCCTTCCTT-TT-T
1 TTCTTCTCCTTCCTTCTTAT
*
26496533 TTCTTCTGCTTCCTTCTTAT
1 TTCTTCTCCTTCCTTCTTAT
26496553 TTCTTC
1 TTCTTC
26496559 CGTTTCTCTA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 14 0.61
19 2 0.09
20 7 0.30
ACGTcount: A:0.02, C:0.32, G:0.02, T:0.64
Consensus pattern (20 bp):
TTCTTCTCCTTCCTTCTTAT
Done.