Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr08 ID=Chr08-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 57128820
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 677448 characters in sequence are not A, C, G, or T
File 91 of 190
Found at i:26910764 original size:19 final size:20
Alignment explanation
Indices: 26910740--26910778 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
26910730 TTTTCCGGAA
*
26910740 ATTTCT-GAAAATGATTTAC
1 ATTTCTGGAAAATGACTTAC
26910759 ATTTCTGGAAAATGACTTAC
1 ATTTCTGGAAAATGACTTAC
26910779 TGAAAATATT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 6 0.33
20 12 0.67
ACGTcount: A:0.36, C:0.13, G:0.13, T:0.38
Consensus pattern (20 bp):
ATTTCTGGAAAATGACTTAC
Found at i:26910902 original size:20 final size:20
Alignment explanation
Indices: 26910877--26910915 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
26910867 GTTATTACAT
26910877 ATATTAATAAATTTATATAC
1 ATATTAATAAATTTATATAC
*
26910897 ATATTAATAAATTTTTATA
1 ATATTAATAAATTTATATA
26910916 TTTTTAAATT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.49, C:0.03, G:0.00, T:0.49
Consensus pattern (20 bp):
ATATTAATAAATTTATATAC
Found at i:26912040 original size:32 final size:32
Alignment explanation
Indices: 26911994--26912054 Score: 104
Period size: 32 Copynumber: 1.9 Consensus size: 32
26911984 TGTCAACCAT
26911994 TTCAATAACCAACAAGCTTAAAACATAATAAA
1 TTCAATAACCAACAAGCTTAAAACATAATAAA
* *
26912026 TTCAATATCTAACAAGCTTAAAACATAAT
1 TTCAATAACCAACAAGCTTAAAACATAAT
26912055 CAATATCTAA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
32 27 1.00
ACGTcount: A:0.52, C:0.18, G:0.03, T:0.26
Consensus pattern (32 bp):
TTCAATAACCAACAAGCTTAAAACATAATAAA
Found at i:26912061 original size:27 final size:30
Alignment explanation
Indices: 26911994--26912067 Score: 91
Period size: 32 Copynumber: 2.5 Consensus size: 30
26911984 TGTCAACCAT
* *
26911994 TTCAATAACCAACAAGCTTAAAACATAATAAA
1 TTCAATATCTAACAAGCTTAAAAC--AATAAA
26912026 TTCAATATCTAACAAGCTTAAAAC-AT-AA
1 TTCAATATCTAACAAGCTTAAAACAATAAA
26912054 -TCAATATCTAACAA
1 TTCAATATCTAACAA
26912068 ATTCAAGACA
Statistics
Matches: 40, Mismatches: 2, Indels: 5
0.85 0.04 0.11
Matches are distributed among these distances:
27 14 0.35
28 2 0.05
29 2 0.05
32 22 0.55
ACGTcount: A:0.53, C:0.19, G:0.03, T:0.26
Consensus pattern (30 bp):
TTCAATATCTAACAAGCTTAAAACAATAAA
Found at i:26912078 original size:27 final size:27
Alignment explanation
Indices: 26912027--26912081 Score: 76
Period size: 27 Copynumber: 2.0 Consensus size: 27
26912017 CATAATAAAT
*
26912027 TCAATATCTAACAAGCTTAAAACATAA
1 TCAATATCTAACAAGATTAAAACATAA
*
26912054 TCAATATCTAACAA-ATTCAAGACATAA
1 TCAATATCTAACAAGATT-AAAACATAA
26912081 T
1 T
26912082 AATTTCAAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 2 0.08
27 23 0.92
ACGTcount: A:0.51, C:0.18, G:0.04, T:0.27
Consensus pattern (27 bp):
TCAATATCTAACAAGATTAAAACATAA
Found at i:26916982 original size:107 final size:109
Alignment explanation
Indices: 26916794--26917098 Score: 483
Period size: 107 Copynumber: 2.8 Consensus size: 109
26916784 TTTCTAATTG
* *
26916794 AGGCAATATTTAGCGTTTGGAAATTCGAGAAAACATGCCCTAAGGTGCTGGGTGTCGATTTTTCT
1 AGGCAATGTTTTGCGTTTGGAAATTCGAG-AAACATGCCCTAAGGTGCTGGGTGTCGATTTTTCT
*
26916859 CGTTCAACCAACTAGCTAAATATCCTTTC-AAAATTACAAAAT-A
65 CGTTCAACCAAATAGCTAAATATCCTTTCAAAAATTACAAAATAA
26916902 AGGCAATGTTTTGCGTTTGGAAATTCGAGAAACATGCCCTAAGGTGCTGGGTGTCGATTTTTCTC
1 AGGCAATGTTTTGCGTTTGGAAATTCGAGAAACATGCCCTAAGGTGCTGGGTGTCGATTTTTCTC
26916967 GTTCAACCAAATAGCTAAATATCCTTTCAAAAATTACAAAATAA
66 GTTCAACCAAATAGCTAAATATCCTTTCAAAAATTACAAAATAA
* * * *
26917011 AGGCAATGTTTTGCGTTTGGAAATTCGAGGAACGTGCTCTAAGGTGCTGGGTTTCGA--TTTCTC
1 AGGCAATGTTTTGCGTTTGGAAATTCGAGAAACATGCCCTAAGGTGCTGGGTGTCGATTTTTCTC
* * *
26917074 GTTTAACCAAATTGCCAAATATCCT
66 GTTCAACCAAATAGCTAAATATCCT
26917099 CTTGAATTTT
Statistics
Matches: 185, Mismatches: 10, Indels: 5
0.93 0.05 0.03
Matches are distributed among these distances:
107 91 0.49
108 40 0.22
109 54 0.29
ACGTcount: A:0.30, C:0.18, G:0.20, T:0.32
Consensus pattern (109 bp):
AGGCAATGTTTTGCGTTTGGAAATTCGAGAAACATGCCCTAAGGTGCTGGGTGTCGATTTTTCTC
GTTCAACCAAATAGCTAAATATCCTTTCAAAAATTACAAAATAA
Found at i:26920486 original size:16 final size:16
Alignment explanation
Indices: 26920461--26920496 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
26920451 AATGAAAATG
* *
26920461 AAAATGAAAAAAATCA
1 AAAATAAAAAAAAACA
26920477 AAAATAAAAAAAAACA
1 AAAATAAAAAAAAACA
26920493 AAAA
1 AAAA
26920497 AGAAGAAAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.83, C:0.06, G:0.03, T:0.08
Consensus pattern (16 bp):
AAAATAAAAAAAAACA
Found at i:26920610 original size:23 final size:25
Alignment explanation
Indices: 26920561--26920633 Score: 78
Period size: 23 Copynumber: 2.9 Consensus size: 25
26920551 AAGAAGACTG
*
26920561 AAAATAGAAACTAGAAGAAAAAGGA
1 AAAAAAGAAACTAGAAGAAAAAGGA
* *
26920586 AAGAAAGAAA-TAGAA-AAAAATGA
1 AAAAAAGAAACTAGAAGAAAAAGGA
26920609 AAAAAAGAAAATCTAGAATGAAAAA
1 AAAAAAG-AAA-CTAGAA-GAAAAA
26920634 AAATACAGAA
Statistics
Matches: 39, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
23 13 0.33
24 8 0.21
25 8 0.21
26 5 0.13
28 5 0.13
ACGTcount: A:0.71, C:0.03, G:0.16, T:0.10
Consensus pattern (25 bp):
AAAAAAGAAACTAGAAGAAAAAGGA
Found at i:26920620 original size:24 final size:24
Alignment explanation
Indices: 26920530--26920620 Score: 71
Period size: 24 Copynumber: 3.8 Consensus size: 24
26920520 ATACAAGGTC
**
26920530 AAAATGAAAATGAGAAAA-AGAAA
1 AAAATGAAAAAAAGAAAATAGAAA
* * *
26920553 GAAGACTG-AAAATAGAAACTAGAAGA
1 -AA-AATGAAAAAAAGAAAATAGAA-A
* *
26920579 AAAAGGAAAGAAAG-AAATAGAAA
1 AAAATGAAAAAAAGAAAATAGAAA
26920602 AAAATGAAAAAAAGAAAAT
1 AAAATGAAAAAAAGAAAAT
26920621 CTAGAATGAA
Statistics
Matches: 51, Mismatches: 11, Indels: 10
0.71 0.15 0.14
Matches are distributed among these distances:
23 13 0.25
24 23 0.45
25 14 0.27
26 1 0.02
ACGTcount: A:0.70, C:0.02, G:0.19, T:0.09
Consensus pattern (24 bp):
AAAATGAAAAAAAGAAAATAGAAA
Found at i:26920660 original size:17 final size:17
Alignment explanation
Indices: 26920543--26920660 Score: 59
Period size: 17 Copynumber: 6.9 Consensus size: 17
26920533 ATGAAAATGA
* *
26920543 GAAAAAGAAAGAAGACT
1 GAAAAAGAAAAAAGAAT
**
26920560 GAAAATAGAAACTAGAA-
1 GAAAA-AGAAAAAAGAAT
* *
26920577 GAAAAAG--GAAAGAAA
1 GAAAAAGAAAAAAGAAT
*
26920592 GAAATAG-AAAAA-AAT
1 GAAAAAGAAAAAAGAAT
*
26920607 GAAAAAAAGAAAATCTAGAAT
1 G--AAAAAGAAAA--AAGAAT
*
26920628 GAAAAA-AAATACAGAAT
1 GAAAAAGAAA-AAAGAAT
26920645 GAAAAAGAAAAAAGAA
1 GAAAAAGAAAAAAGAA
26920661 AAATAAAAGG
Statistics
Matches: 77, Mismatches: 13, Indels: 22
0.69 0.12 0.20
Matches are distributed among these distances:
14 4 0.05
15 9 0.12
16 5 0.06
17 31 0.40
18 17 0.22
19 6 0.08
20 1 0.01
21 4 0.05
ACGTcount: A:0.70, C:0.03, G:0.18, T:0.08
Consensus pattern (17 bp):
GAAAAAGAAAAAAGAAT
Found at i:26921538 original size:7 final size:7
Alignment explanation
Indices: 26921526--26921572 Score: 62
Period size: 7 Copynumber: 7.0 Consensus size: 7
26921516 CTGAGTCCAA
26921526 AAAAATG
1 AAAAATG
26921533 AAAAAT-
1 AAAAATG
*
26921539 AAGAATG
1 AAAAATG
*
26921546 GAAAATG
1 AAAAATG
26921553 AAAAATG
1 AAAAATG
26921560 -AAAATG
1 AAAAATG
26921566 AAAAATG
1 AAAAATG
26921573 GAGAGGCTAA
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
6 11 0.32
7 23 0.68
ACGTcount: A:0.68, C:0.00, G:0.17, T:0.15
Consensus pattern (7 bp):
AAAAATG
Found at i:26921550 original size:13 final size:14
Alignment explanation
Indices: 26921526--26921574 Score: 66
Period size: 13 Copynumber: 3.6 Consensus size: 14
26921516 CTGAGTCCAA
*
26921526 AAAAATGAAAAAT-
1 AAAAATGGAAAATG
*
26921539 AAGAATGGAAAATG
1 AAAAATGGAAAATG
26921553 AAAAAT-GAAAATG
1 AAAAATGGAAAATG
26921566 AAAAATGGA
1 AAAAATGGA
26921575 GAGGCTAAGA
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
13 24 0.77
14 7 0.23
ACGTcount: A:0.67, C:0.00, G:0.18, T:0.14
Consensus pattern (14 bp):
AAAAATGGAAAATG
Found at i:26921552 original size:20 final size:20
Alignment explanation
Indices: 26921526--26921572 Score: 69
Period size: 20 Copynumber: 2.4 Consensus size: 20
26921516 CTGAGTCCAA
26921526 AAAAATGAAAAAT-AAGAATG
1 AAAAATGAAAAATGAA-AATG
*
26921546 GAAAATGAAAAATGAAAATG
1 AAAAATGAAAAATGAAAATG
26921566 AAAAATG
1 AAAAATG
26921573 GAGAGGCTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
20 22 0.92
21 2 0.08
ACGTcount: A:0.68, C:0.00, G:0.17, T:0.15
Consensus pattern (20 bp):
AAAAATGAAAAATGAAAATG
Found at i:26922888 original size:43 final size:43
Alignment explanation
Indices: 26922837--26923060 Score: 138
Period size: 43 Copynumber: 5.2 Consensus size: 43
26922827 GATAGTAGAT
26922837 CTTGCCTTCCTGCGTTAACAGCGAAGCAGATCGAAAACAAAGC
1 CTTGCCTTCCTGCGTTAACAGCGAAGCAGATCGAAAACAAAGC
* * * * * * ** * *
26922880 CTTGCCTTCATTG-GTT-GCAGTGGAGCTGGTTAAAGAAGCAGA-T
1 CTTGCCTTC-CTGCGTTAACAGCGAAGCAGATCGAA-AA-CAAAGC
26922923 CTTGCCTTCCTGCGTTAACAGCGAAGCAGATCGAAAACAAAGC
1 CTTGCCTTCCTGCGTTAACAGCGAAGCAGATCGAAAACAAAGC
* ** * * * ** * *
26922966 CTTGCCTTCATTG-GTT-GTAG-TAGAGCTGGTTAAAGAAGCAGA-T
1 CTTGCCTTC-CTGCGTTAACAGCGA-AGCAGATCGAA-AA-CAAAGC
*
26923009 CTTGCCTTCCTGCGTTAACAGCAAAGCAGATCGAAAACAAAGC
1 CTTGCCTTCCTGCGTTAACAGCGAAGCAGATCGAAAACAAAGC
*
26923052 CTTACCTTC
1 CTTGCCTTC
26923061 ATTGGTTGCA
Statistics
Matches: 126, Mismatches: 41, Indels: 28
0.65 0.21 0.14
Matches are distributed among these distances:
41 1 0.01
42 30 0.24
43 64 0.51
44 30 0.24
45 1 0.01
ACGTcount: A:0.29, C:0.24, G:0.23, T:0.25
Consensus pattern (43 bp):
CTTGCCTTCCTGCGTTAACAGCGAAGCAGATCGAAAACAAAGC
Found at i:26922960 original size:86 final size:87
Alignment explanation
Indices: 26922777--26923342 Score: 637
Period size: 86 Copynumber: 6.5 Consensus size: 87
26922767 AGATCAGTGA
* * * **
26922777 AGATCGAAAATAAAGCCTTGCCTTCATTAGTTGCAGTGGAGCTGGTTAAAGATAGTAGATCTTGC
1 AGATCGAAAACAAAGCCTTGCCTTCATTGGTTGCAGTGGAGCTGGTTAAAGACAACAGATCTTGC
*
26922842 CTTCCTGCGTTAACAGCGAAGC
66 CTTCCTGCATTAACAGCGAAGC
*
26922864 AGATCGAAAACAAAGCCTTGCCTTCATTGGTTGCAGTGGAGCTGGTTAAAGA-AGCAGATCTTGC
1 AGATCGAAAACAAAGCCTTGCCTTCATTGGTTGCAGTGGAGCTGGTTAAAGACAACAGATCTTGC
*
26922928 CTTCCTGCGTTAACAGCGAAGC
66 CTTCCTGCATTAACAGCGAAGC
* * *
26922950 AGATCGAAAACAAAGCCTTGCCTTCATTGGTTGTAGTAGAGCTGGTTAAAGA-AGCAGATCTTGC
1 AGATCGAAAACAAAGCCTTGCCTTCATTGGTTGCAGTGGAGCTGGTTAAAGACAACAGATCTTGC
* *
26923014 CTTCCTGCGTTAACAGCAAAGC
66 CTTCCTGCATTAACAGCGAAGC
* *
26923036 AGATCGAAAACAAAGCCTTACCTTCATTGGTTGCAGTGGAGCTGGTTAAAGACAAAAGATCTTGC
1 AGATCGAAAACAAAGCCTTGCCTTCATTGGTTGCAGTGGAGCTGGTTAAAGACAACAGATCTTGC
* * *
26923101 CTTCTTGCATTGACGGCGAAGC
66 CTTCCTGCATTAACAGCGAAGC
* * * * * *
26923123 AGGTC-AAAGACACAAACCTTGCCTCTC-TCGGTTG-TGATGGAGCTGGTTGAAGACAAAAGATC
1 AGATCGAAA-ACA-AAGCCTTGCCT-TCATTGGTTGCAG-TGGAGCTGGTTAAAGACAACAGATC
*
26923185 TTGCCTTCCTGCATTGACAGCGAAGC
62 TTGCCTTCCTGCATTAACAGCGAAGC
* * * * * * *
26923211 AGGTCGAAGACACAAA-CCTTGCCTCCCTCGGTTG-TGATGGAGCTAGTTGAAGACAACAGATCT
1 AGATCGAA-A-ACAAAGCCTTGCCTTCATTGGTTGCAG-TGGAGCTGGTTAAAGACAACAGATCT
* *
26923274 TGCCTTCTTGCATTGACAGCGAAGC
63 TGCCTTCCTGCATTAACAGCGAAGC
* * * * * *
26923299 AGGTCGAAGACGAA-CCTTACCTCTC-TCGGTTGTAGTGGAGCTGG
1 AGATCGAAAACAAAGCCTTGCCT-TCATTGGTTGCAGTGGAGCTGG
26923343 CTGAAGAATT
Statistics
Matches: 434, Mismatches: 35, Indels: 21
0.89 0.07 0.04
Matches are distributed among these distances:
86 194 0.45
87 88 0.20
88 142 0.33
89 6 0.01
90 4 0.01
ACGTcount: A:0.28, C:0.22, G:0.25, T:0.25
Consensus pattern (87 bp):
AGATCGAAAACAAAGCCTTGCCTTCATTGGTTGCAGTGGAGCTGGTTAAAGACAACAGATCTTGC
CTTCCTGCATTAACAGCGAAGC
Found at i:26923144 original size:44 final size:44
Alignment explanation
Indices: 26923096--26923309 Score: 145
Period size: 44 Copynumber: 4.9 Consensus size: 44
26923086 GACAAAAGAT
* *
26923096 CTTGCCTTCTTGCATTGACGGCGAAGCAGGTCAAAGACACAAAC
1 CTTGCCTTCTTGCATTGACAGCGAAGCAGGTCGAAGACACAAAC
* ** * * * * *
26923140 CTTGCCTCTCTCGGTTGTGA-TG-G-AGCTGGTTGAAGACAAAAGAT
1 CTTGCCT-TCTTGCAT-TGACAGCGAAGCAGGTCGAAGACACAA-AC
*
26923184 CTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACACAAAC
1 CTTGCCTTCTTGCATTGACAGCGAAGCAGGTCGAAGACACAAAC
* * ** * * * *
26923228 CTTGCCTCCCTCGGTTGTGA-TG-G-AGCTA-GTTGAAGACAACAGAT
1 CTTGCCT-TCTTGCAT-TGACAGCGAAGC-AGGTCGAAGAC-ACAAAC
26923272 CTTGCCTTCTTGCATTGACAGCGAAGCAGGTCGAAGAC
1 CTTGCCTTCTTGCATTGACAGCGAAGCAGGTCGAAGAC
26923310 GAACCTTACC
Statistics
Matches: 123, Mismatches: 33, Indels: 27
0.67 0.18 0.15
Matches are distributed among these distances:
42 6 0.05
43 35 0.28
44 40 0.33
45 36 0.29
46 6 0.05
ACGTcount: A:0.26, C:0.25, G:0.26, T:0.24
Consensus pattern (44 bp):
CTTGCCTTCTTGCATTGACAGCGAAGCAGGTCGAAGACACAAAC
Found at i:26923449 original size:44 final size:44
Alignment explanation
Indices: 26923356--26923995 Score: 115
Period size: 44 Copynumber: 14.8 Consensus size: 44
26923346 AAGAATTTCA
* * * *
26923356 GATCTTATCTCCTTGAGATTACAGCGGAGCAGATTGAAGTTAGT
1 GATCTTATCTCCCTGAGATTACAGCGGAGCAGATTAAAATAAGT
* * **
26923400 AATCTTATCTCCCTGAGATTACAGTGGAGTGGATTAAAATGAAG-
1 GATCTTATCTCCCTGAGATTACAGCGGAGCAGATTAAAAT-AAGT
* * * **** *
26923444 GATCTTATCTCTCTGA-AGTTACAGCAGAGTAGA-TCGCGTCAG-
1 GATCTTATCTCCCTGAGA-TTACAGCGGAGCAGATTAAAATAAGT
* * * ** * ****
26923486 G-TCTTATCTCCCTGAGGTTACAGTGGAGTAGACCGAAGACTTTCA
1 GATCTTATCTCCCTGAGATTACAGCGGAGCAGA-TTAA-AATAAGT
* ** ***
26923531 GATCTTATCTCCCTGAGGTTACAGCGGAGCAGATCGAAGGCAG-
1 GATCTTATCTCCCTGAGATTACAGCGGAGCAGATTAAAATAAGT
* * * * **** *
26923574 GATCTTATCTCTCT-AAAGTTACAGTGGAGTAGA-CCGCATCAG-
1 GATCTTATCTCCCTGAGA-TTACAGCGGAGCAGATTAAAATAAGT
* * ** * ****
26923616 G-TCTTATCTCCCTGAGGTTACAGCGGAGTAGACCGAAGACTTTCA
1 GATCTTATCTCCCTGAGATTACAGCGGAGCAGA-TTAA-AATAAGT
* * * * *
26923661 GATCTTATCCCCCTGAGGTTACAGCGGAGCAGATCGAAGA-CA-T
1 GATCTTATCTCCCTGAGATTACAGCGGAGCAGAT-TAAAATAAGT
* * * * *
26923704 AATCCTATCTCCCTGA-AGTTACAGTGGAGCGGATTAAAATAAAT
1 GATCTTATCTCCCTGAGA-TTACAGCGGAGCAGATTAAAATAAGT
* ** * *** *
26923748 GATCTTATCTCTCTGAG-TTACAGTAGAGTAGA-TCGCATCAG-
1 GATCTTATCTCCCTGAGATTACAGCGGAGCAGATTAAAATAAGT
* * * ** * ****
26923789 G-TCTTATCTCCCTGAGGTTACAGTGGAGTAGACCGAAGACTTTCA
1 GATCTTATCTCCCTGAGATTACAGCGGAGCAGA-TTAA-AATAAGT
* * * *
26923834 GATCTTATCTCCCTGAGGTTACAGCGGAGCAGATCGAAGA-CA-T
1 GATCTTATCTCCCTGAGATTACAGCGGAGCAGAT-TAAAATAAGT
* * * *
26923877 AATCCTATCTCCCTGA-AGTTACAGTGGAGCGGATTAAAATAAAG-
1 GATCTTATCTCCCTGAGA-TTACAGCGGAGCAGATTAAAAT-AAGT
* ** * *** *
26923921 GATCTTATCTCTCTGA-AGTTACAGTAGAGTAGA-TCGCATCAG-
1 GATCTTATCTCCCTGAGA-TTACAGCGGAGCAGATTAAAATAAGT
*
26923963 G-TCTTATCTCCCTGAGGTTACAGCGGAGCAGAT
1 GATCTTATCTCCCTGAGATTACAGCGGAGCAGAT
26923996 CGAAGACACT
Statistics
Matches: 432, Mismatches: 131, Indels: 68
0.68 0.21 0.11
Matches are distributed among these distances:
40 14 0.03
41 91 0.21
42 23 0.05
43 100 0.23
44 105 0.24
45 6 0.01
46 93 0.22
ACGTcount: A:0.28, C:0.21, G:0.24, T:0.27
Consensus pattern (44 bp):
GATCTTATCTCCCTGAGATTACAGCGGAGCAGATTAAAATAAGT
Found at i:26923466 original size:88 final size:85
Alignment explanation
Indices: 26923356--26923603 Score: 198
Period size: 87 Copynumber: 2.8 Consensus size: 85
26923346 AAGAATTTCA
* * *
26923356 GATCTTATCTCCTTGAGATTACAGCGGAGCAGATTGAAGTTAGTAATCTTATCTCCCTGAGATTA
1 GATCTTATCTCCTTGAGATTACAGCAGAGCAGATCG-AGTCAG--ATCTTATCTCCCTGAGATTA
26923421 CAGTGGAGTGGATTAAAATGAAG
63 CAGTGGAGTGGATTAAAATGAAG
* * * *
26923444 GATCTTATCT-CTCTGA-AGTTACAGCAGAGTAGATCGCGTCAGGTCTTATCTCCCTGAGGTTAC
1 GATCTTATCTCCT-TGAGA-TTACAGCAGAGCAGATCGAGTCAGATCTTATCTCCCTGAGATTAC
* ** * **
26923507 AGTGGAGTAGACCGAAGACTTTCA-
64 AGTGGAGTGGA-TTAA-A-ATGAAG
* * * * * *
26923531 GATCTTATCTCCCTGAGGTTACAGCGGAGCAGATCGAAGGCAGGATCTTATCTCTCT-AAAGTTA
1 GATCTTATCTCCTTGAGATTACAGCAGAGCAGATCG-AGTCA-GATCTTATCTCCCTGAGA-TTA
26923595 CAGTGGAGT
63 CAGTGGAGT
26923604 AGACCGCATC
Statistics
Matches: 127, Mismatches: 23, Indels: 19
0.75 0.14 0.11
Matches are distributed among these distances:
85 29 0.23
86 2 0.02
87 37 0.29
88 35 0.28
89 24 0.19
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.29
Consensus pattern (85 bp):
GATCTTATCTCCTTGAGATTACAGCAGAGCAGATCGAGTCAGATCTTATCTCCCTGAGATTACAG
TGGAGTGGATTAAAATGAAG
Found at i:26923594 original size:130 final size:130
Alignment explanation
Indices: 26923401--26923727 Score: 465
Period size: 130 Copynumber: 2.5 Consensus size: 130
26923391 GAAGTTAGTA
* * ** ** * *
26923401 ATCTTATCTCCCTGAGATTACAGTGGAGTGGATTAAAATGAAGGATCTTATCTCTCTGAAGTTAC
1 ATCTTATCTCCCTGAGGTTACAGCGGAGCAGA-TCGAAGGCAGGATCTTATCTCTCTGAAGTTAC
* * *
26923466 AGCAGAGTAGATCGCGTCAGGTCTTATCTCCCTGAGGTTACAGTGGAGTAGACCGAAGACTTTCA
65 AGCAGAGTAGACCGCATCAGGTCTTATCTCCCTGAGGTTACAGCGGAGTAGACCGAAGACTTTCA
26923531 G
130 G
*
26923532 ATCTTATCTCCCTGAGGTTACAGCGGAGCAGATCGAAGGCAGGATCTTATCTCTCTAAAGTTACA
1 ATCTTATCTCCCTGAGGTTACAGCGGAGCAGATCGAAGGCAGGATCTTATCTCTCTGAAGTTACA
**
26923597 GTGGAGTAGACCGCATCAGGTCTTATCTCCCTGAGGTTACAGCGGAGTAGACCGAAGACTTTCAG
66 GCAGAGTAGACCGCATCAGGTCTTATCTCCCTGAGGTTACAGCGGAGTAGACCGAAGACTTTCAG
* * ** * *
26923662 ATCTTATCCCCCTGAGGTTACAGCGGAGCAGATCGAAGACATAATCCTATCTCCCTGAAGTTACA
1 ATCTTATCTCCCTGAGGTTACAGCGGAGCAGATCGAAGGCAGGATCTTATCTCTCTGAAGTTACA
26923727 G
66 G
26923728 TGGAGCGGAT
Statistics
Matches: 175, Mismatches: 21, Indels: 1
0.89 0.11 0.01
Matches are distributed among these distances:
130 147 0.84
131 28 0.16
ACGTcount: A:0.27, C:0.22, G:0.24, T:0.27
Consensus pattern (130 bp):
ATCTTATCTCCCTGAGGTTACAGCGGAGCAGATCGAAGGCAGGATCTTATCTCTCTGAAGTTACA
GCAGAGTAGACCGCATCAGGTCTTATCTCCCTGAGGTTACAGCGGAGTAGACCGAAGACTTTCAG
Found at i:26923779 original size:173 final size:173
Alignment explanation
Indices: 26923482--26924002 Score: 792
Period size: 173 Copynumber: 3.0 Consensus size: 173
26923472 GTAGATCGCG
* * * * * *
26923482 TCAGGTCTTATCTCCCTGAGGTTACAGTGGAGTAGACCGAAGACTTTCAGATCTTATCTCCCTGA
1 TCAGATCTTATCTCCCTGAGGTTACAGCGGAGCAGATCGAAGAC-AT-A-ATCCTATCTCCCTGA
* * * ** *** * * *
26923547 GGTTACAGCGGAGCAGA-TCGAAGGCAGGATCTTATCTCTCTAAAGTTACAGTGGAGTAGACCGC
63 AGTTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCT-GAGTTACAGTAGAGTAGATCGC
26923611 ATCAGGTCTTATCTCCCTGAGGTTACAGCGGAGTAGACCGAAGACTT
127 ATCAGGTCTTATCTCCCTGAGGTTACAGCGGAGTAGACCGAAGACTT
*
26923658 TCAGATCTTATCCCCCTGAGGTTACAGCGGAGCAGATCGAAGACATAATCCTATCTCCCTGAAGT
1 TCAGATCTTATCTCCCTGAGGTTACAGCGGAGCAGATCGAAGACATAATCCTATCTCCCTGAAGT
*
26923723 TACAGTGGAGCGGATTAAAATAAATGATCTTATCTCTCTGAGTTACAGTAGAGTAGATCGCATCA
66 TACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAGTTACAGTAGAGTAGATCGCATCA
*
26923788 GGTCTTATCTCCCTGAGGTTACAGTGGAGTAGACCGAAGACTT
131 GGTCTTATCTCCCTGAGGTTACAGCGGAGTAGACCGAAGACTT
26923831 TCAGATCTTATCTCCCTGAGGTTACAGCGGAGCAGATCGAAGACATAATCCTATCTCCCTGAAGT
1 TCAGATCTTATCTCCCTGAGGTTACAGCGGAGCAGATCGAAGACATAATCCTATCTCCCTGAAGT
26923896 TACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATC
66 TACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTG-AGTTACAGTAGAGTAGATCGCATC
* *
26923961 AGGTCTTATCTCCCTGAGGTTACAGCGGAGCAGATCGAAGAC
130 AGGTCTTATCTCCCTGAGGTTACAGCGGAGTAGACCGAAGAC
26924003 ACTATCCTAT
Statistics
Matches: 318, Mismatches: 25, Indels: 6
0.91 0.07 0.02
Matches are distributed among these distances:
173 196 0.62
174 82 0.26
175 1 0.00
176 39 0.12
ACGTcount: A:0.28, C:0.22, G:0.24, T:0.26
Consensus pattern (173 bp):
TCAGATCTTATCTCCCTGAGGTTACAGCGGAGCAGATCGAAGACATAATCCTATCTCCCTGAAGT
TACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAGTTACAGTAGAGTAGATCGCATCA
GGTCTTATCTCCCTGAGGTTACAGCGGAGTAGACCGAAGACTT
Found at i:26923819 original size:303 final size:308
Alignment explanation
Indices: 26923345--26924033 Score: 970
Period size: 303 Copynumber: 2.3 Consensus size: 308
26923335 GGAGCTGGCT
* * * * ** * *
26923345 GAAGAATTTCAGATCTTATCTCCTTGAGATTACAGCGGAGCAGATTGAAGTTAGTAATCTTATCT
1 GAAGACTTTCAGATCTTATCTCCCTGAGGTTACAGCGGAGCAGATCGAAGACACTAATCCTATCT
* *
26923410 CCCTG-AGATTACAGTGGAGTGGATTAAAATGAAGGATCTTATCTCTCTGAAGTTACAGCAGAGT
66 CCCTGAAG-TTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGCAGAGT
*
26923474 AGATCGCGTCAGGTCTTATCTCCCTGAGGTTACAGTGGAGTAGACCGAAGACTTTCAGATCTTAT
130 AGATCGCATCAGGTCTTATCTCCCTGAGGTTACAGTGGAGTAGACCGAAGACTTTCAGATCTTAT
* * * * *
26923539 CTCCCTGAGGTTACAGCGGAGCAGATCGAAGGCAGGATCTTATCTCTCTAAAGTTACAGTGGAGT
195 CTCCCTGAGGTTACAGCGGAGCAGATCGAAGACAGAATCCTATCTCCCTAAAGTTACAGTGGAGC
*** * * *
26923604 AGA-CCGCAT-CAGG-TCTTATCTCCCTGAGGTTACAGCGGAGTAGACC
260 AGATCAAAATAAAGGATCTTATCTCCCTGAAGTTACAGCAGAGTAGACC
*
26923650 GAAGACTTTCAGATCTTATCCCCCTGAGGTTACAGCGGAGCAGATCGAAGACA-TAATCCTATCT
1 GAAGACTTTCAGATCTTATCTCCCTGAGGTTACAGCGGAGCAGATCGAAGACACTAATCCTATCT
* *
26923714 CCCTGAAGTTACAGTGGAGCGGATTAAAATAAATGATCTTATCTCTCTG-AGTTACAGTAGAGTA
66 CCCTGAAGTTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGCAGAGTA
26923778 GATCGCATCAGGTCTTATCTCCCTGAGGTTACAGTGGAGTAGACCGAAGACTTTCAGATCTTATC
131 GATCGCATCAGGTCTTATCTCCCTGAGGTTACAGTGGAGTAGACCGAAGACTTTCAGATCTTATC
* * *
26923843 TCCCTGAGGTTACAGCGGAGCAGATCGAAGACATAATCCTATCTCCCTGAAGTTACAGTGGAGCG
196 TCCCTGAGGTTACAGCGGAGCAGATCGAAGACAGAATCCTATCTCCCTAAAGTTACAGTGGAGCA
* * * *
26923908 GATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATC
261 GATCAAAATAAAGGATCTTATCTCCCTGAAGTTACAGCAGAGTAGACC
* *
26923956 ---G-C-ATCAGGTCTTATCTCCCTGAGGTTACAGCGGAGCAGATCGAAGACACT-ATCCTATCT
1 GAAGACTTTCAGATCTTATCTCCCTGAGGTTACAGCGGAGCAGATCGAAGACACTAATCCTATCT
*
26924015 CCCTGAAGTTGCAGTGGAG
66 CCCTGAAGTTACAGTGGAG
26924034 TAAATTAAAA
Statistics
Matches: 344, Mismatches: 35, Indels: 14
0.88 0.09 0.04
Matches are distributed among these distances:
301 70 0.20
302 2 0.01
303 138 0.40
304 55 0.16
305 51 0.15
306 28 0.08
ACGTcount: A:0.28, C:0.21, G:0.24, T:0.27
Consensus pattern (308 bp):
GAAGACTTTCAGATCTTATCTCCCTGAGGTTACAGCGGAGCAGATCGAAGACACTAATCCTATCT
CCCTGAAGTTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGCAGAGTA
GATCGCATCAGGTCTTATCTCCCTGAGGTTACAGTGGAGTAGACCGAAGACTTTCAGATCTTATC
TCCCTGAGGTTACAGCGGAGCAGATCGAAGACAGAATCCTATCTCCCTAAAGTTACAGTGGAGCA
GATCAAAATAAAGGATCTTATCTCCCTGAAGTTACAGCAGAGTAGACC
Found at i:26925376 original size:3 final size:3
Alignment explanation
Indices: 26925368--26925419 Score: 86
Period size: 3 Copynumber: 17.3 Consensus size: 3
26925358 ATAAATTTCA
* *
26925368 TAT TAT TAT TGT TAT TAT TAT TAT TAT TAT TAT TAT TAT TTT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
26925416 TAT T
1 TAT T
26925420 GCTTTTATAT
Statistics
Matches: 45, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
3 45 1.00
ACGTcount: A:0.29, C:0.00, G:0.02, T:0.69
Consensus pattern (3 bp):
TAT
Found at i:26925466 original size:16 final size:15
Alignment explanation
Indices: 26925367--26925467 Score: 68
Period size: 15 Copynumber: 6.6 Consensus size: 15
26925357 AATAAATTTC
*
26925367 ATATTATTATTGTTAT
1 ATATTA-TATTTTTAT
*
26925383 -TATTATTATTATTAT
1 ATATTA-TATTTTTAT
26925398 -TATTATTATTTTTAT
1 ATATTA-TATTTTTAT
26925413 -TATTAT-TGCTTTTAT
1 ATATTATAT--TTTTAT
* *
26925428 ATA-TATATGTATAT
1 ATATTATATTTTTAT
26925442 ATATATATATTTTTAT
1 ATAT-TATATTTTTAT
26925458 ATACTTATAT
1 ATA-TTATAT
26925468 ACATACCTAC
Statistics
Matches: 72, Mismatches: 6, Indels: 14
0.78 0.07 0.15
Matches are distributed among these distances:
13 1 0.01
14 8 0.11
15 42 0.58
16 20 0.28
17 1 0.01
ACGTcount: A:0.33, C:0.02, G:0.03, T:0.62
Consensus pattern (15 bp):
ATATTATATTTTTAT
Found at i:26928702 original size:265 final size:257
Alignment explanation
Indices: 26928210--26928731 Score: 882
Period size: 265 Copynumber: 2.0 Consensus size: 257
26928200 ATCAGGAATT
* *
26928210 TTATGCGTGTAAAGGTACTGATCATTCGTGTTCCTTTGAAATGACAAAAAAATCATTTTAACATA
1 TTATGCGTGTAAAGGTACTAATCATTCGTGTTCCTTTGAAACGACAAAAAAATCATTTTAACATA
*
26928275 TGGGGATCAAGGTTAATGCAAAATTTAAATATAAGTTTTCCTTGTTTTGCTTTACTTGTGGTCGA
66 TGGGGATCAAGGTTAATGCAAAATTTAAATATAAGTTTTCCTTGCTTTGCTTTACTTGTGGTCGA
*
26928340 TTGGGTCATAGGGATAGCTTCTGTCCAACGAGGCTGTATAATAGAGGGTTGAATGTGGTTCTTGT
131 TTGGGTCATAGGGATAGCTTCTGTCCAACGAGGCTGTATAATAGAGGGTTGAATATGGTTCTTGT
* *
26928405 ATCACGGGCTAGACCTTTCGTCTCGCAATCCGTACGGCCTTAGACGATCCGTTTGCTCCAAA
196 ATCACAGGCTAGACCTTTCGTCTCGCAATCCGTACGGCCTTAGACGATCCGTTTACTCCAAA
*
26928467 TTATGCGTGTAAAGGTACTAATCGTTGTTCGTGTTCCTTTGAAACGACAAAAAAAAATCATTTTA
1 TTATGCGTGTAAAGGTACTAATC---ATTCGTGTTCCTTTGAAACGAC--AAAAAAATCATTTTA
*
26928532 ACATATGGGGATCAAGGTTAATGCAAAATTTAAATATGAGAAGTTTTCCTTGCTTTGCTTTGCTT
61 ACATATGGGGATCAAGGTTAATGCAAAATTTAAATAT---AAGTTTTCCTTGCTTTGCTTTACTT
26928597 GTGGTCGATTGGGTCATAGGGATAGCTTCTGTCCAACGAGGCTGTATAATAGAGGGTTGAATATG
123 GTGGTCGATTGGGTCATAGGGATAGCTTCTGTCCAACGAGGCTGTATAATAGAGGGTTGAATATG
* *
26928662 GTTCTTGTATCACAGGCTAGACCTTTCGTCTCGCAATCCGTGCGGCCTTAGACGATCTGTTTACT
188 GTTCTTGTATCACAGGCTAGACCTTTCGTCTCGCAATCCGTACGGCCTTAGACGATCCGTTTACT
26928727 CCAAA
253 CCAAA
26928732 CTCGCCTAAG
Statistics
Matches: 247, Mismatches: 10, Indels: 8
0.93 0.04 0.03
Matches are distributed among these distances:
257 22 0.09
260 20 0.08
262 52 0.21
265 153 0.62
ACGTcount: A:0.26, C:0.17, G:0.23, T:0.34
Consensus pattern (257 bp):
TTATGCGTGTAAAGGTACTAATCATTCGTGTTCCTTTGAAACGACAAAAAAATCATTTTAACATA
TGGGGATCAAGGTTAATGCAAAATTTAAATATAAGTTTTCCTTGCTTTGCTTTACTTGTGGTCGA
TTGGGTCATAGGGATAGCTTCTGTCCAACGAGGCTGTATAATAGAGGGTTGAATATGGTTCTTGT
ATCACAGGCTAGACCTTTCGTCTCGCAATCCGTACGGCCTTAGACGATCCGTTTACTCCAAA
Found at i:26937040 original size:21 final size:21
Alignment explanation
Indices: 26937002--26937042 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
26936992 ATTTTAGCTA
*
26937002 TTTTAAAATAAATTAATAAAT
1 TTTTAAAATAAATAAATAAAT
26937023 TTTTAAAAT-AATCAAATAAA
1 TTTTAAAATAAAT-AAATAAA
26937043 AATGGCGCTA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 3 0.17
21 15 0.83
ACGTcount: A:0.59, C:0.02, G:0.00, T:0.39
Consensus pattern (21 bp):
TTTTAAAATAAATAAATAAAT
Found at i:26939032 original size:33 final size:33
Alignment explanation
Indices: 26938995--26939079 Score: 91
Period size: 33 Copynumber: 2.5 Consensus size: 33
26938985 TACTCTATAT
*
26938995 TTGGTGTGTTGGTTGGATTAGCTCTTA-TGAGCA
1 TTGGTGTGTTGGTTGGATTAGCTC-GAGTGAGCA
* * *
26939028 TTGGTGTGATGGATGGATTGGCTCGAGTGAGCA
1 TTGGTGTGTTGGTTGGATTAGCTCGAGTGAGCA
*
26939061 TCTGGTATGTTTGGTTGGA
1 T-TGGTGTG-TTGGTTGGA
26939080 CTAATGATGT
Statistics
Matches: 42, Mismatches: 7, Indels: 4
0.79 0.13 0.08
Matches are distributed among these distances:
32 1 0.02
33 28 0.67
34 6 0.14
35 7 0.17
ACGTcount: A:0.15, C:0.08, G:0.38, T:0.39
Consensus pattern (33 bp):
TTGGTGTGTTGGTTGGATTAGCTCGAGTGAGCA
Found at i:26942130 original size:11 final size:11
Alignment explanation
Indices: 26942112--26942146 Score: 52
Period size: 11 Copynumber: 3.2 Consensus size: 11
26942102 CTGCCCATAC
26942112 TAATTTTTATA
1 TAATTTTTATA
*
26942123 TTATTTTTATA
1 TAATTTTTATA
*
26942134 TAATTTTAATA
1 TAATTTTTATA
26942145 TA
1 TA
26942147 TATAATACAT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
11 21 1.00
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (11 bp):
TAATTTTTATA
Found at i:26942379 original size:22 final size:22
Alignment explanation
Indices: 26942354--26942396 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 22
26942344 TATCCAAATA
26942354 ATAACAATAAAAT-AGTAGCAAC
1 ATAACAATAAAATGA-TAGCAAC
* *
26942376 ATAATAGTAAAATGATAGCAA
1 ATAACAATAAAATGATAGCAA
26942397 AATAGGGAGA
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
22 17 0.94
23 1 0.06
ACGTcount: A:0.58, C:0.09, G:0.12, T:0.21
Consensus pattern (22 bp):
ATAACAATAAAATGATAGCAAC
Found at i:26947615 original size:36 final size:36
Alignment explanation
Indices: 26947575--26947650 Score: 143
Period size: 36 Copynumber: 2.1 Consensus size: 36
26947565 AGCATTGATA
26947575 GCTATCTTGAGTATCATTTATTAAACCTGATGTAAT
1 GCTATCTTGAGTATCATTTATTAAACCTGATGTAAT
*
26947611 GCTATCTTGAGTATCATTTGTTAAACCTGATGTAAT
1 GCTATCTTGAGTATCATTTATTAAACCTGATGTAAT
26947647 GCTA
1 GCTA
26947651 AACGATGTAC
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
36 39 1.00
ACGTcount: A:0.29, C:0.14, G:0.16, T:0.41
Consensus pattern (36 bp):
GCTATCTTGAGTATCATTTATTAAACCTGATGTAAT
Found at i:26947665 original size:36 final size:35
Alignment explanation
Indices: 26947582--26947665 Score: 98
Period size: 36 Copynumber: 2.3 Consensus size: 35
26947572 ATAGCTATCT
* *
26947582 TGAGTATCATTTATTAAACCTGATGTAATGCTATC
1 TGAGTACCATTTATTAAACCTGATGTAATGCTAAC
* *
26947617 TTGAGTATCATTTGTTAAACCTGATGTAATGCTAAAC
1 -TGAGTACCATTTATTAAACCTGATGTAATGCT-AAC
26947654 -GATGTACCATTT
1 TGA-GTACCATTT
26947666 CACATGTGCG
Statistics
Matches: 43, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
35 2 0.05
36 39 0.91
37 2 0.05
ACGTcount: A:0.31, C:0.14, G:0.15, T:0.39
Consensus pattern (35 bp):
TGAGTACCATTTATTAAACCTGATGTAATGCTAAC
Found at i:26953553 original size:60 final size:60
Alignment explanation
Indices: 26953460--26953574 Score: 230
Period size: 60 Copynumber: 1.9 Consensus size: 60
26953450 ATGGGTTGAT
26953460 TCCAGTGTGATCGGTTTGTCATAGGTATTGCTTTCGACATGATTGATTTGTCATACTGAC
1 TCCAGTGTGATCGGTTTGTCATAGGTATTGCTTTCGACATGATTGATTTGTCATACTGAC
26953520 TCCAGTGTGATCGGTTTGTCATAGGTATTGCTTTCGACATGATTGATTTGTCATA
1 TCCAGTGTGATCGGTTTGTCATAGGTATTGCTTTCGACATGATTGATTTGTCATA
26953575 AGTATTGGTT
Statistics
Matches: 55, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
60 55 1.00
ACGTcount: A:0.20, C:0.16, G:0.23, T:0.41
Consensus pattern (60 bp):
TCCAGTGTGATCGGTTTGTCATAGGTATTGCTTTCGACATGATTGATTTGTCATACTGAC
Found at i:26953580 original size:32 final size:32
Alignment explanation
Indices: 26953474--26953581 Score: 91
Period size: 32 Copynumber: 3.5 Consensus size: 32
26953464 GTGTGATCGG
*
26953474 TTTGTCATAGGTATTGCTTTCGACATGATTGA
1 TTTGTCATAAGTATTGCTTTCGACATGATTGA
* * * ** * *
26953506 TTTGTCAT-ACTGACTCCAGT-G---TGATCGG
1 TTTGTCATAAGT-ATTGCTTTCGACATGATTGA
*
26953534 TTTGTCATAGGTATTGCTTTCGACATGATTGA
1 TTTGTCATAAGTATTGCTTTCGACATGATTGA
26953566 TTTGTCATAAGTATTG
1 TTTGTCATAAGTATTG
26953582 GTTTTTTTTG
Statistics
Matches: 53, Mismatches: 17, Indels: 12
0.65 0.21 0.15
Matches are distributed among these distances:
28 17 0.32
29 2 0.04
31 2 0.04
32 32 0.60
ACGTcount: A:0.21, C:0.14, G:0.22, T:0.43
Consensus pattern (32 bp):
TTTGTCATAAGTATTGCTTTCGACATGATTGA
Found at i:26953643 original size:22 final size:22
Alignment explanation
Indices: 26953611--26953662 Score: 86
Period size: 22 Copynumber: 2.4 Consensus size: 22
26953601 CCTTTTTAGG
* *
26953611 TATTTTCTTAATAGTTAAAAAA
1 TATTTTTTTAACAGTTAAAAAA
26953633 TATTTTTTTAACAGTTAAAAAA
1 TATTTTTTTAACAGTTAAAAAA
26953655 TATTTTTT
1 TATTTTTT
26953663 AACTGGTACT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
22 28 1.00
ACGTcount: A:0.40, C:0.04, G:0.04, T:0.52
Consensus pattern (22 bp):
TATTTTTTTAACAGTTAAAAAA
Found at i:26959562 original size:62 final size:59
Alignment explanation
Indices: 26959454--26959570 Score: 162
Period size: 62 Copynumber: 1.9 Consensus size: 59
26959444 ATCACTTTAA
* * * *
26959454 TATTAAATTAATATAATATTTATTAAGATAAATATTAGATTAAATTTAATATTAAATCT
1 TATTAAAATAATAGAATATTTATTAAGATAAACATTAAATTAAATTTAATATTAAATCT
*
26959513 TATTAAAATAATAGAATGTTTATCTACAAGATAAACATTAAATTAAATTTAATATTAA
1 TATTAAAATAATAGAATATTTAT-T--AAGATAAACATTAAATTAAATTTAATATTAA
26959571 GAAAATCACT
Statistics
Matches: 50, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
59 20 0.40
60 1 0.02
62 29 0.58
ACGTcount: A:0.50, C:0.03, G:0.04, T:0.42
Consensus pattern (59 bp):
TATTAAAATAATAGAATATTTATTAAGATAAACATTAAATTAAATTTAATATTAAATCT
Found at i:26961251 original size:15 final size:15
Alignment explanation
Indices: 26961227--26961258 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
26961217 TATGCATGAA
*
26961227 AAATATAAAAGACAT
1 AAATACAAAAGACAT
26961242 AAATACAAAAGACAT
1 AAATACAAAAGACAT
26961257 AA
1 AA
26961259 TAGTGAAATG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.69, C:0.09, G:0.06, T:0.16
Consensus pattern (15 bp):
AAATACAAAAGACAT
Found at i:26965485 original size:27 final size:27
Alignment explanation
Indices: 26965455--26965698 Score: 190
Period size: 27 Copynumber: 9.1 Consensus size: 27
26965445 ACACAACATC
*
26965455 AAAGAATAGCCTTTGTGGCGAACTCTG
1 AAAGAATAGCCTTTGTGGCAAACTCTG
* *
26965482 AAAGAATAGTCTTTGTGG-AAAATCTG
1 AAAGAATAGCCTTTGTGGCAAACTCTG
* * * *
26965508 AAAGAATAGTCTTTTTAGCGAACTCTG
1 AAAGAATAGCCTTTGTGGCAAACTCTG
* * * *
26965535 GAAGGATAGCCTTTGTGGAAAACTCTA
1 AAAGAATAGCCTTTGTGGCAAACTCTG
* * * *
26965562 AAAGGATAACCTTTCTGGCAAACTTTG
1 AAAGAATAGCCTTTGTGGCAAACTCTG
* * ** *
26965589 AAAGAATAACCTTAGTGAAAAACTTTG
1 AAAGAATAGCCTTTGTGGCAAACTCTG
** * *
26965616 AAAGGAAT-GCCTCAGTGGCGAACTCTAA
1 AAA-GAATAGCCTTTGTGGCAAACTCT-G
*
26965644 AAAGAAT-GCCTTAGTGGCAAACTCTG
1 AAAGAATAGCCTTTGTGGCAAACTCTG
* *
26965670 AAAGGGAT-GCCTTTGTGGCAAATTCTG
1 AAA-GAATAGCCTTTGTGGCAAACTCTG
26965697 AA
1 AA
26965699 TGGAACGATT
Statistics
Matches: 174, Mismatches: 39, Indels: 8
0.79 0.18 0.04
Matches are distributed among these distances:
26 25 0.14
27 142 0.82
28 7 0.04
ACGTcount: A:0.35, C:0.16, G:0.23, T:0.27
Consensus pattern (27 bp):
AAAGAATAGCCTTTGTGGCAAACTCTG
Found at i:26965688 original size:54 final size:55
Alignment explanation
Indices: 26965458--26965698 Score: 224
Period size: 54 Copynumber: 4.5 Consensus size: 55
26965448 CAACATCAAA
* *
26965458 GAATAGCCTTTGTGGCGAACTCTGAAAGAATAGTCTTTGTGGAAAA-TCTGAAA-
1 GAATAGCCTTTGTGGCGAACTCTGAAAGAATAGCCTTAGTGGAAAACTCTGAAAG
* * * * * * *
26965511 GAATAGTCTTTTTAGCGAACTCTGGAAGGATAGCCTTTGTGGAAAACTCTAAAAG
1 GAATAGCCTTTGTGGCGAACTCTGAAAGAATAGCCTTAGTGGAAAACTCTGAAAG
* * * * * * *
26965566 G-ATAACCTTTCTGGCAAACTTTGAAAGAATAACCTTAGTGAAAAACTTTGAAAG
1 GAATAGCCTTTGTGGCGAACTCTGAAAGAATAGCCTTAGTGGAAAACTCTGAAAG
** * *
26965620 GAAT-GCCTCAGTGGCGAACTCTAAAAAGAAT-GCCTTAGTGGCAAACTCTGAAAG
1 GAATAGCCTTTGTGGCGAACTCT-GAAAGAATAGCCTTAGTGGAAAACTCTGAAAG
* * *
26965674 GGAT-GCCTTTGTGGCAAATTCTGAA
1 GAATAGCCTTTGTGGCGAACTCTGAA
26965699 TGGAACGATT
Statistics
Matches: 147, Mismatches: 37, Indels: 8
0.77 0.19 0.04
Matches are distributed among these distances:
53 42 0.29
54 95 0.65
55 10 0.07
ACGTcount: A:0.34, C:0.16, G:0.23, T:0.27
Consensus pattern (55 bp):
GAATAGCCTTTGTGGCGAACTCTGAAAGAATAGCCTTAGTGGAAAACTCTGAAAG
Found at i:26981164 original size:109 final size:109
Alignment explanation
Indices: 26980977--26981503 Score: 691
Period size: 109 Copynumber: 4.8 Consensus size: 109
26980967 TTAAAAAACG
* *
26980977 AGGCGATATATTGCGTTTGGAAAGTCGAGAAAATGTGCCCTAATGTGTGCTGGGTTTCGATTTTT
1 AGGCAATATTTTGCGTTTGGAAAGTCGAGAAAATGTGCCCTAA--TGTGCTGGGTTTCGATTTTT
* * *
26981042 CTAGTTCGACCAAATAGCCAAATATCCTTTTAAAAAATTCAAAATA
64 CTCGCTCGACCAAATAGCCAAATATCCTTTTAAAAATTTCAAAATA
* * * * *
26981088 AGGCAATGTTTTGCATCTGGAAATTCGAGAAAACGTGCCCTAATGTGCTGGGTTTCGATTTTTCT
1 AGGCAATATTTTGCGTTTGGAAAGTCGAGAAAATGTGCCCTAATGTGCTGGGTTTCGATTTTTCT
* *
26981153 TGCTCAACCAAATAGCCAAATATCCTTTTAAAAATTTCAAAATA
66 CGCTCGACCAAATAGCCAAATATCCTTTTAAAAATTTCAAAATA
* * ** *
26981197 AGGCAATGTTTTGCGTTTGGAAATTCGAGAAAATGTGCCCTAATACGCTGCGTTTCGATTTTTCT
1 AGGCAATATTTTGCGTTTGGAAAGTCGAGAAAATGTGCCCTAATGTGCTGGGTTTCGATTTTTCT
* **
26981262 CGCTCGACCAAATAGCCAAATAT-CTTTTCAAAAATTTTAAAAGG
66 CGCTCGACCAAATAGCCAAATATCCTTTT-AAAAATTTCAAAATA
* *
26981306 AGGCGATATTTTGCGTTTGGAAAGTCGAGAAAATGTGCCCTAATGTGCTGGGTTTTGATTTTTCT
1 AGGCAATATTTTGCGTTTGGAAAGTCGAGAAAATGTGCCCTAATGTGCTGGGTTTCGATTTTTCT
* * **
26981371 CGCTCGACCAAATAGCCAAATATCCTTTCAAAAATTTTAAAACG
66 CGCTCGACCAAATAGCCAAATATCCTTTTAAAAATTTCAAAATA
* * * * * * *
26981415 AGGCAATATTTTGTGTTTGGAAACTAGAGAAAACGTTCCCTAATGCGTTGGGTTTCGA-TTTT-T
1 AGGCAATATTTTGCGTTTGGAAAGTCGAGAAAATGTGCCCTAATGTGCTGGGTTTCGATTTTTCT
* *
26981478 CGTTGGACCAAATAGCCAAATATCCT
66 CGCTCGACCAAATAGCCAAATATCCT
26981504 CTTATATCTT
Statistics
Matches: 372, Mismatches: 42, Indels: 8
0.88 0.10 0.02
Matches are distributed among these distances:
107 25 0.07
108 9 0.02
109 298 0.80
110 4 0.01
111 36 0.10
ACGTcount: A:0.31, C:0.17, G:0.19, T:0.33
Consensus pattern (109 bp):
AGGCAATATTTTGCGTTTGGAAAGTCGAGAAAATGTGCCCTAATGTGCTGGGTTTCGATTTTTCT
CGCTCGACCAAATAGCCAAATATCCTTTTAAAAATTTCAAAATA
Found at i:26982688 original size:7 final size:7
Alignment explanation
Indices: 26982676--26982726 Score: 50
Period size: 7 Copynumber: 7.4 Consensus size: 7
26982666 TGGATTACTA
26982676 TTTAGGG
1 TTTAGGG
26982683 TTTAGGG
1 TTTAGGG
*
26982690 TTTACGG
1 TTTAGGG
*
26982697 TATA-GG
1 TTTAGGG
*
26982703 TTTAGTG
1 TTTAGGG
**
26982710 TTTTTGG
1 TTTAGGG
26982717 TTTAGGG
1 TTTAGGG
26982724 TTT
1 TTT
26982727 GAGAGTTTGG
Statistics
Matches: 34, Mismatches: 9, Indels: 2
0.76 0.20 0.04
Matches are distributed among these distances:
6 5 0.15
7 29 0.85
ACGTcount: A:0.14, C:0.02, G:0.33, T:0.51
Consensus pattern (7 bp):
TTTAGGG
Found at i:26982861 original size:7 final size:7
Alignment explanation
Indices: 26982851--26982928 Score: 50
Period size: 7 Copynumber: 11.0 Consensus size: 7
26982841 AGAGTTTTGA
26982851 GTTTAGG
1 GTTTAGG
*
26982858 GTTTATG
1 GTTTAGG
* *
26982865 ATGTAGG
1 GTTTAGG
* *
26982872 TTTTGGTG
1 GTTTAG-G
26982880 GTTT-GG
1 GTTTAGG
26982886 GTTTAGG
1 GTTTAGG
*
26982893 GTTTAGAA
1 GTTTAG-G
26982901 GTTTAGG
1 GTTTAGG
* *
26982908 ATTTAAG
1 GTTTAGG
*
26982915 GTTTGGG
1 GTTTAGG
26982922 GTTTAGG
1 GTTTAGG
26982929 CTGCTTTAGT
Statistics
Matches: 52, Mismatches: 16, Indels: 6
0.70 0.22 0.08
Matches are distributed among these distances:
6 5 0.10
7 37 0.71
8 10 0.19
ACGTcount: A:0.17, C:0.00, G:0.38, T:0.45
Consensus pattern (7 bp):
GTTTAGG
Found at i:26988499 original size:21 final size:21
Alignment explanation
Indices: 26988473--26988562 Score: 99
Period size: 21 Copynumber: 4.3 Consensus size: 21
26988463 CTACAACTTA
*
26988473 AAGCAGAGGCGGTAGCGAGGG
1 AAGCAGAGGCGGCAGCGAGGG
*
26988494 AAGCAGAGGCTGCAGCGAGGG
1 AAGCAGAGGCGGCAGCGAGGG
* * * *
26988515 AAGCAGAGGCTGCAACAAGAG
1 AAGCAGAGGCGGCAGCGAGGG
* * *
26988536 AAGCAAAGGCTGCAGCGAGAG
1 AAGCAGAGGCGGCAGCGAGGG
26988557 AAGCAG
1 AAGCAG
26988563 CGAGAGAAGC
Statistics
Matches: 60, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 60 1.00
ACGTcount: A:0.36, C:0.18, G:0.42, T:0.04
Consensus pattern (21 bp):
AAGCAGAGGCGGCAGCGAGGG
Found at i:26988564 original size:12 final size:12
Alignment explanation
Indices: 26988547--26988574 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
26988537 AGCAAAGGCT
26988547 GCAGCGAGAGAA
1 GCAGCGAGAGAA
26988559 GCAGCGAGAGAA
1 GCAGCGAGAGAA
26988571 GCAG
1 GCAG
26988575 AGGTTCAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.39, C:0.18, G:0.43, T:0.00
Consensus pattern (12 bp):
GCAGCGAGAGAA
Found at i:26989112 original size:42 final size:41
Alignment explanation
Indices: 26988949--26989223 Score: 207
Period size: 42 Copynumber: 6.4 Consensus size: 41
26988939 AATCCCAAAA
* * *
26988949 TTAGTGGCGTTTTTTTATAAAAGCGCCGCTAAA-AGTCATGTTCT
1 TTAGCGGCG-TTTTTTAT--AAGCGCCGCTAAAGA-ACATGATCT
* **
26988993 ATAGCGGCGTTTGTGAAGTAAGCGCCGCTAAAGAACATGATCT
1 TTAGCGGCGTTT-TTTA-TAAGCGCCGCTAAAGAACATGATCT
* * * * * *
26989036 GTAGCGGCGTTTTTTACCAAGTGCCACTATAGAACATTA-CTT
1 TTAGCGGCGTTTTTTA-TAAGCGCCGCTAAAGAACATGATC-T
*
26989078 TTAGCGGCGTTTCTGTT-TAAGCGCCGCTAAAGAACATGATCA
1 TTAGCGGCGTTT-T-TTATAAGCGCCGCTAAAGAACATGATCT
* *
26989120 TTAGCGGCGTCTTTTTTTAAGCGATAAGCACCGCTAAAGGACATGATCT
1 TTAGCGGCG---TTTTTT-----ATAAGCGCCGCTAAAGAACATGATCT
* *
26989169 TTAGCGGCGTTTTTTGT-AGCGCCGCTAAAGAACATGACCT
1 TTAGCGGCGTTTTTTATAAGCGCCGCTAAAGAACATGATCT
26989209 TTAGCGGCGTTTTTT
1 TTAGCGGCGTTTTTT
26989224 TTTGTAAACG
Statistics
Matches: 186, Mismatches: 29, Indels: 36
0.74 0.12 0.14
Matches are distributed among these distances:
40 35 0.19
41 2 0.01
42 57 0.31
43 38 0.20
44 13 0.07
45 4 0.02
46 6 0.03
49 31 0.17
ACGTcount: A:0.25, C:0.20, G:0.23, T:0.32
Consensus pattern (41 bp):
TTAGCGGCGTTTTTTATAAGCGCCGCTAAAGAACATGATCT
Found at i:26991376 original size:26 final size:26
Alignment explanation
Indices: 26991338--26991560 Score: 216
Period size: 26 Copynumber: 8.6 Consensus size: 26
26991328 CCTGAATAGA
*
26991338 AGGCCTTGAGCCGGTGTTTATTTAGC
1 AGGCTTTGAGCCGGTGTTTATTTAGC
* * *
26991364 ATGCCTTGAGCCGGTGTTTGTTTAGC
1 AGGCTTTGAGCCGGTGTTTATTTAGC
* * * *
26991390 AGGCTTTGAGCCAGTGATTACTTAGT
1 AGGCTTTGAGCCGGTGTTTATTTAGC
** * *
26991416 AGGCTTTGAGCTAGTGATTACTTAGC
1 AGGCTTTGAGCCGGTGTTTATTTAGC
* * *
26991442 AGGCTATGAGTCTGTGTTTATTTAGC
1 AGGCTTTGAGCCGGTGTTTATTTAGC
* * * *
26991468 AGGCTTTGAGCTGATGATTATTTAAC
1 AGGCTTTGAGCCGGTGTTTATTTAGC
* *
26991494 AGGCTTTGAGCCGATGTTTA-TTAGA
1 AGGCTTTGAGCCGGTGTTTATTTAGC
* *
26991519 AGACTTTGAGTCGGTGTTTATCTT-GC
1 AGGCTTTGAGCCGGTGTTTAT-TTAGC
26991545 AGGCTTTGAGCCGGTG
1 AGGCTTTGAGCCGGTG
26991561 AATGTTTATC
Statistics
Matches: 161, Mismatches: 34, Indels: 4
0.81 0.17 0.02
Matches are distributed among these distances:
25 20 0.12
26 139 0.86
27 2 0.01
ACGTcount: A:0.19, C:0.15, G:0.29, T:0.37
Consensus pattern (26 bp):
AGGCTTTGAGCCGGTGTTTATTTAGC
Found at i:26997879 original size:65 final size:63
Alignment explanation
Indices: 26997757--26997954 Score: 218
Period size: 70 Copynumber: 3.0 Consensus size: 63
26997747 AAGTGATAAA
* * * *
26997757 TTCTTCATTATTTTCATT-AAAAAGTTAATTTTAATTCACATTGATTAGAGAACACTTTCATAT
1 TTCTTCACTATTTTCATTAAAAAAGTTAATTTTAA-CCACATTGACTAGAGAATACTTTCATAT
*
26997820 TTCTTCACTATTTTCATTAAAAAAATTAATTTTAACGCTACATTGACTAGAGAATACTTTTGTAA
1 TTCTTCACTATTTTCATTAAAAAAGTTAATTTTAAC-C-ACATTGACTAGAGAATAC--TT-T--
*
26997885 CTTAT
59 CATAT
* * *
26997890 TTCTTCACTATTTTCATTAAACACGCTAATTTTAACCACCCATTGACTAGAGAATACTTTCATAT
1 TTCTTCACTATTTTCATTAAAAAAGTTAATTTTAACCA--CATTGACTAGAGAATACTTTCATAT
26997955 CTCACTTTTT
Statistics
Matches: 114, Mismatches: 11, Indels: 18
0.80 0.08 0.13
Matches are distributed among these distances:
63 17 0.15
64 16 0.14
65 20 0.18
67 3 0.03
68 4 0.04
69 1 0.01
70 53 0.46
ACGTcount: A:0.34, C:0.17, G:0.07, T:0.42
Consensus pattern (63 bp):
TTCTTCACTATTTTCATTAAAAAAGTTAATTTTAACCACATTGACTAGAGAATACTTTCATAT
Found at i:26997909 original size:70 final size:66
Alignment explanation
Indices: 26997757--26997984 Score: 205
Period size: 70 Copynumber: 3.4 Consensus size: 66
26997747 AAGTGATAAA
* * * * * *
26997757 TTCTTCATTATTTTCATT-AAAAAGTTAATTTTAATTCACATTGATTAGAGAACAC--TTT-CAT
1 TTCTTCACTATTTTCATTAAAAAAATTAATTTTAA-CCACATTGACTAGAGAATACTTTTTACTT
26997818 AT
65 AT
26997820 TTCTTCACTATTTTCATTAAAAAAATTAATTTTAACGCTACATTGACTAGAGAATACTTTTGTAA
1 TTCTTCACTATTTTCATTAAAAAAATTAATTTTAAC-C-ACATTGACTAGAGAATACTTTT-T-A
26997885 CTTAT
62 CTTAT
* *** *
26997890 TTCTTCACTATTTTCATTAAACACGCTAATTTTAACCACCCATTGACTAGAGAATACTTTCATAT
1 TTCTTCACTATTTTCATTAAAAAAATTAATTTTAACCA--CATTGACTAGAGAATACTTT-TTA-
*
26997955 CTCACT
62 CTTA-T
* *
26997961 TT-TTTACTATTTTTATTAAAAAAA
1 TTCTTCACTATTTTCATTAAAAAAA
26997985 AGTTAAATTT
Statistics
Matches: 135, Mismatches: 17, Indels: 19
0.79 0.10 0.11
Matches are distributed among these distances:
63 17 0.13
64 16 0.12
65 16 0.12
67 2 0.01
68 2 0.01
69 2 0.01
70 77 0.57
71 3 0.02
ACGTcount: A:0.35, C:0.16, G:0.06, T:0.43
Consensus pattern (66 bp):
TTCTTCACTATTTTCATTAAAAAAATTAATTTTAACCACATTGACTAGAGAATACTTTTTACTTA
T
Found at i:26998286 original size:94 final size:93
Alignment explanation
Indices: 26998070--26998291 Score: 236
Period size: 94 Copynumber: 2.4 Consensus size: 93
26998060 TTTAATCTTC
* * * *
26998070 TTAAAAAGTTAATTTTAATTCCTCATTTG-CTAGAGAACATTCTCATGCTCACACTTATCTTATA
1 TTAAAAAGTTGATTTTAATTCCTCA-TTGACTAGAAAACACTCTCATGCTCACACTTACCTTATA
*
26998134 AATAAGTGCCAATTTCTTCACTATTTTAA
65 AATAAGTGACAATTTCTTCACTATTTTAA
* * * * * *
26998163 TTAAAAAAATTGAATTCAATCCCAT-ATTGACTAGAAAACACTCTCATATCTC-CATTTACCTTA
1 TT-AAAAAGTTGATTTTAATTCC-TCATTGACTAGAAAACACTCTCAT-GCTCACACTTACCTTA
*
26998226 -AAAGTAAGTGACAATTTCTTCACTATTTTTTA
63 TAAA-TAAGTGACAATTTCTTCACTA-TTTTAA
* *
26998258 TTAAAAAGTTGATTTTAGTTCCTCATTGATTAGA
1 TTAAAAAGTTGATTTTAATTCCTCATTGACTAGA
26998292 GAGTATCCTC
Statistics
Matches: 104, Mismatches: 18, Indels: 13
0.77 0.13 0.10
Matches are distributed among these distances:
93 9 0.09
94 84 0.81
95 11 0.11
ACGTcount: A:0.35, C:0.17, G:0.08, T:0.40
Consensus pattern (93 bp):
TTAAAAAGTTGATTTTAATTCCTCATTGACTAGAAAACACTCTCATGCTCACACTTACCTTATAA
ATAAGTGACAATTTCTTCACTATTTTAA
Found at i:26998844 original size:9 final size:9
Alignment explanation
Indices: 26998830--26998860 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
26998820 GTTAAACAAA
26998830 TCGAGTTAT
1 TCGAGTTAT
*
26998839 TCGAGTTAA
1 TCGAGTTAT
26998848 TCGAGTTAT
1 TCGAGTTAT
26998857 TCGA
1 TCGA
26998861 ATCAACTCGA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.26, C:0.13, G:0.23, T:0.39
Consensus pattern (9 bp):
TCGAGTTAT
Found at i:26998931 original size:9 final size:9
Alignment explanation
Indices: 26998914--26998950 Score: 65
Period size: 9 Copynumber: 4.1 Consensus size: 9
26998904 TGAGTTTTTG
26998914 AATTCGAAT
1 AATTCGAAT
*
26998923 AACTCGAAT
1 AATTCGAAT
26998932 AATTCGAAT
1 AATTCGAAT
26998941 AATTCGAAT
1 AATTCGAAT
26998950 A
1 A
26998951 TTAAACTATA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
9 26 1.00
ACGTcount: A:0.46, C:0.14, G:0.11, T:0.30
Consensus pattern (9 bp):
AATTCGAAT
Found at i:26999945 original size:5 final size:5
Alignment explanation
Indices: 26999935--26999960 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
26999925 CTCGAAAATT
26999935 TTCGA TTCGA TTCGA TTCGA TTCGA T
1 TTCGA TTCGA TTCGA TTCGA TTCGA T
26999961 CGAATGCTCA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.19, C:0.19, G:0.19, T:0.42
Consensus pattern (5 bp):
TTCGA
Found at i:27003740 original size:18 final size:18
Alignment explanation
Indices: 27003717--27003751 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
27003707 TAATGCTTAT
27003717 TGAGCCATCACATATCCG
1 TGAGCCATCACATATCCG
*
27003735 TGAGCCATCATATATCC
1 TGAGCCATCACATATCC
27003752 ATCCACATAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.29, C:0.31, G:0.14, T:0.26
Consensus pattern (18 bp):
TGAGCCATCACATATCCG
Found at i:27015396 original size:24 final size:24
Alignment explanation
Indices: 27015341--27015390 Score: 91
Period size: 24 Copynumber: 2.1 Consensus size: 24
27015331 CACCCAATGA
27015341 ATGTAGTGGTATTAAGTCCACGAG
1 ATGTAGTGGTATTAAGTCCACGAG
*
27015365 ATGTAGTGGTTTTAAGTCCACGAG
1 ATGTAGTGGTATTAAGTCCACGAG
27015389 AT
1 AT
27015391 AGAGTGAAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.28, C:0.12, G:0.28, T:0.32
Consensus pattern (24 bp):
ATGTAGTGGTATTAAGTCCACGAG
Found at i:27017541 original size:43 final size:43
Alignment explanation
Indices: 27017349--27017521 Score: 258
Period size: 43 Copynumber: 4.0 Consensus size: 43
27017339 ATGCCGTTAT
* * *
27017349 AGAACATGACCTTTAGCGGTGC-TTTACCCACAAACGCCGCTAA
1 AGAACATGATCTTTAGCGGCGCTTTTA-TCACAAACGCCGCTAA
* *
27017392 AGAACATGATCTTTAGCGGAGCTTTTATCACAAATGCCGCTAA
1 AGAACATGATCTTTAGCGGCGCTTTTATCACAAACGCCGCTAA
* *
27017435 AGAACATGACCTGTAGCGGCGCTTTTATCACAAACGCCGCTAA
1 AGAACATGATCTTTAGCGGCGCTTTTATCACAAACGCCGCTAA
*
27017478 AGAACATGTTCTTTAGCGGCGCTTTTATCACAAACGCCGCTAA
1 AGAACATGATCTTTAGCGGCGCTTTTATCACAAACGCCGCTAA
27017521 A
1 A
27017522 AGTACCGTTC
Statistics
Matches: 118, Mismatches: 11, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
43 114 0.97
44 4 0.03
ACGTcount: A:0.31, C:0.26, G:0.19, T:0.24
Consensus pattern (43 bp):
AGAACATGATCTTTAGCGGCGCTTTTATCACAAACGCCGCTAA
Found at i:27017716 original size:21 final size:21
Alignment explanation
Indices: 27017692--27017754 Score: 62
Period size: 21 Copynumber: 3.2 Consensus size: 21
27017682 TAACTGAAGT
27017692 ATAATTTAAAATATTATTACA
1 ATAATTTAAAATATTATTACA
*
27017713 ATAATTTTAAA-ATTA--ACA
1 ATAATTTAAAATATTATTACA
* * *
27017731 AT-GTTAAAAATATTCTTACA
1 ATAATTTAAAATATTATTACA
27017751 ATAA
1 ATAA
27017755 GAAAACAAAT
Statistics
Matches: 32, Mismatches: 6, Indels: 8
0.70 0.13 0.17
Matches are distributed among these distances:
17 5 0.16
18 8 0.25
20 9 0.28
21 10 0.31
ACGTcount: A:0.52, C:0.06, G:0.02, T:0.40
Consensus pattern (21 bp):
ATAATTTAAAATATTATTACA
Found at i:27019252 original size:42 final size:43
Alignment explanation
Indices: 27019201--27019296 Score: 113
Period size: 42 Copynumber: 2.3 Consensus size: 43
27019191 TGAGATTTAT
* *
27019201 GTGTAAGACCATGTCTAAGACATTGGCGTC-GTATGTGATTAC
1 GTGTAAGACCATGTCTAAGACAGTGGCATCAGTATGTGATTAC
* ** * *
27019243 GTGTAAGACCCTGTCTGGGACAGTGGCATCATTATTTGATTAC
1 GTGTAAGACCATGTCTAAGACAGTGGCATCAGTATGTGATTAC
*
27019286 ATGTAAGACCA
1 GTGTAAGACCA
27019297 CGTCCGGGAC
Statistics
Matches: 44, Mismatches: 9, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
42 25 0.57
43 19 0.43
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.30
Consensus pattern (43 bp):
GTGTAAGACCATGTCTAAGACAGTGGCATCAGTATGTGATTAC
Found at i:27020168 original size:44 final size:44
Alignment explanation
Indices: 27020105--27020270 Score: 253
Period size: 44 Copynumber: 3.8 Consensus size: 44
27020095 TGAAGTAAAT
27020105 TGTTGATTGAATGCTGTCCAATTGTTGATTAAATGCTATCCAAA
1 TGTTGATTGAATGCTGTCCAATTGTTGATTAAATGCTATCCAAA
* **
27020149 TGTTGATTGAATGCTGTCCAATTGTTGATTAAATGTTGCCCAAA
1 TGTTGATTGAATGCTGTCCAATTGTTGATTAAATGCTATCCAAA
* * * *
27020193 TGTTGATTGAATGTTGTCCGATTGTTGATTAAATGCTTTTCAAA
1 TGTTGATTGAATGCTGTCCAATTGTTGATTAAATGCTATCCAAA
*
27020237 TGTT-ATTGAATGTTGTCCAATTGTTGATTAAATG
1 TGTTGATTGAATGCTGTCCAATTGTTGATTAAATG
27020271 TTGTTCGAAT
Statistics
Matches: 112, Mismatches: 10, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
43 29 0.26
44 83 0.74
ACGTcount: A:0.27, C:0.11, G:0.20, T:0.42
Consensus pattern (44 bp):
TGTTGATTGAATGCTGTCCAATTGTTGATTAAATGCTATCCAAA
Found at i:27020271 original size:22 final size:22
Alignment explanation
Indices: 27020102--27020274 Score: 197
Period size: 22 Copynumber: 7.9 Consensus size: 22
27020092 AAGTGAAGTA
* *
27020102 AATTGTTGATTGAATGCTGTCC
1 AATTGTTGATTAAATGTTGTCC
* *
27020124 AATTGTTGATTAAATGCTATCC
1 AATTGTTGATTAAATGTTGTCC
* * *
27020146 AAATGTTGATTGAATGCTGTCC
1 AATTGTTGATTAAATGTTGTCC
*
27020168 AATTGTTGATTAAATGTTGCCC
1 AATTGTTGATTAAATGTTGTCC
* *
27020190 AAATGTTGATTGAATGTTGTCC
1 AATTGTTGATTAAATGTTGTCC
* *
27020212 GATTGTTGATTAAATGCTT-TTC
1 AATTGTTGATTAAATG-TTGTCC
* *
27020234 AAATGTT-ATTGAATGTTGTCC
1 AATTGTTGATTAAATGTTGTCC
27020255 AATTGTTGATTAAATGTTGT
1 AATTGTTGATTAAATGTTGT
27020275 TCGAATGTTG
Statistics
Matches: 126, Mismatches: 22, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
20 2 0.02
21 15 0.12
22 107 0.85
23 2 0.02
ACGTcount: A:0.27, C:0.10, G:0.20, T:0.43
Consensus pattern (22 bp):
AATTGTTGATTAAATGTTGTCC
Found at i:27022331 original size:3 final size:3
Alignment explanation
Indices: 27022323--27022363 Score: 73
Period size: 3 Copynumber: 13.7 Consensus size: 3
27022313 AAAGTATTTC
*
27022323 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTG TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
27022364 TTAATGTTCA
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
3 36 1.00
ACGTcount: A:0.29, C:0.00, G:0.02, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:27023067 original size:21 final size:21
Alignment explanation
Indices: 27023041--27023082 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
27023031 GTTTGCAAAG
*
27023041 TTAGGGGTTTCGGGGGGGAAA
1 TTAGGGGTTTCAGGGGGGAAA
*
27023062 TTAGGGGTTTTAGGGGGGAAA
1 TTAGGGGTTTCAGGGGGGAAA
27023083 ATTTGGGGAT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.21, C:0.02, G:0.50, T:0.26
Consensus pattern (21 bp):
TTAGGGGTTTCAGGGGGGAAA
Found at i:27023084 original size:22 final size:21
Alignment explanation
Indices: 27023041--27023090 Score: 64
Period size: 22 Copynumber: 2.3 Consensus size: 21
27023031 GTTTGCAAAG
* *
27023041 TTAGGGGTTTCGGGGGGGAAA
1 TTAGGGGTTTAGGGGGGAAAA
27023062 TTAGGGGTTTTAGGGGGGAAAA
1 TTAGGGG-TTTAGGGGGGAAAA
*
27023084 TTTGGGG
1 TTAGGGG
27023091 ATAAAACGGC
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
21 7 0.28
22 18 0.72
ACGTcount: A:0.20, C:0.02, G:0.50, T:0.28
Consensus pattern (21 bp):
TTAGGGGTTTAGGGGGGAAAA
Found at i:27023996 original size:7 final size:7
Alignment explanation
Indices: 27023986--27024139 Score: 66
Period size: 7 Copynumber: 21.6 Consensus size: 7
27023976 CGTAAAATAG
27023986 AAACCCT
1 AAACCCT
27023993 AAACCCCT
1 AAA-CCCT
*
27024001 AACCCCT
1 AAACCCT
27024008 -AACCCTT
1 AAACCC-T
27024015 AAACACC-
1 AAAC-CCT
*
27024022 -AACTCTT
1 AAAC-CCT
*
27024029 AAACCAT
1 AAACCCT
*
27024036 AAACCAT
1 AAACCCT
*
27024043 AAACCAT
1 AAACCCT
*
27024050 AATCCCT
1 AAACCCT
27024057 AAACCCAT
1 AAACCC-T
* *
27024065 AATCCAT
1 AAACCCT
*
27024072 AAACCTT
1 AAACCCT
*
27024079 AAA--AT
1 AAACCCT
27024084 AGTAACTCCT
1 A--AAC-CCT
*
27024094 AAACCAT
1 AAACCCT
*
27024101 AAAACCT
1 AAACCCT
*
27024108 AAACCAT
1 AAACCCT
*
27024115 ATACCCT
1 AAACCCT
*
27024122 AAACCAT
1 AAACCCT
27024129 AAACCCT
1 AAACCCT
27024136 AAAC
1 AAAC
27024140 TATAATGATA
Statistics
Matches: 111, Mismatches: 24, Indels: 24
0.70 0.15 0.15
Matches are distributed among these distances:
5 2 0.02
6 8 0.07
7 77 0.69
8 20 0.18
9 2 0.02
10 2 0.02
ACGTcount: A:0.46, C:0.34, G:0.01, T:0.19
Consensus pattern (7 bp):
AAACCCT
Found at i:27024040 original size:50 final size:50
Alignment explanation
Indices: 27023935--27024047 Score: 129
Period size: 50 Copynumber: 2.3 Consensus size: 50
27023925 CTAATTAATC
* * *
27023935 TAAACCGTAAACCCCTAACCCATATCCCTTAAACCCTAAATCGTAAAATA
1 TAAACCATAAACCCCTAACCCATAACCCTTAAACCCTAAATCGTAAAACA
* * * * * *
27023985 GAAACCCTAAACCCCTAACCCCTAACCCTTAAACACC-AACTCTTAAACCA
1 TAAACCATAAACCCCTAACCCATAACCCTTAAAC-CCTAAATCGTAAAACA
27024035 TAAACCATAAACC
1 TAAACCATAAACC
27024048 ATAATCCCTA
Statistics
Matches: 52, Mismatches: 10, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
50 50 0.96
51 2 0.04
ACGTcount: A:0.42, C:0.36, G:0.03, T:0.19
Consensus pattern (50 bp):
TAAACCATAAACCCCTAACCCATAACCCTTAAACCCTAAATCGTAAAACA
Found at i:27024045 original size:14 final size:14
Alignment explanation
Indices: 27024028--27024144 Score: 87
Period size: 14 Copynumber: 8.2 Consensus size: 14
27024018 CACCAACTCT
27024028 TAAACCATAAACCA
1 TAAACCATAAACCA
* *
27024042 TAAACCATAATCCC
1 TAAACCATAAACCA
*
27024056 TAAACCCATAATCCA
1 TAAA-CCATAAACCA
*
27024071 TAAACCTTAAA--A
1 TAAACCATAAACCA
*
27024083 TAGTAACTCCTAAACCA
1 TA--AAC-CATAAACCA
27024100 TAAAACC-TAAACCA
1 T-AAACCATAAACCA
* *
27024114 TATACCCTAAACCA
1 TAAACCATAAACCA
* *
27024128 TAAACCCTAAACTA
1 TAAACCATAAACCA
27024142 TAA
1 TAA
27024145 TGATAATTAA
Statistics
Matches: 86, Mismatches: 9, Indels: 16
0.77 0.08 0.14
Matches are distributed among these distances:
12 3 0.03
13 4 0.05
14 54 0.63
15 19 0.22
16 3 0.03
17 2 0.02
18 1 0.01
ACGTcount: A:0.50, C:0.29, G:0.01, T:0.21
Consensus pattern (14 bp):
TAAACCATAAACCA
Found at i:27024616 original size:40 final size:41
Alignment explanation
Indices: 27024561--27024666 Score: 144
Period size: 40 Copynumber: 2.6 Consensus size: 41
27024551 TTTTTACGGG
* *
27024561 GTTTTTCAAAAAGCGCCGCTAATGCTCAATCT-ATAGCTG-C
1 GTTTTTCAAAAAGCGCCGCTAATGCTCAACCTAATAAC-GAC
*
27024601 GTTTTTCAAGAAGCGCCGCTAATGCTCAACCTAATAACGAC
1 GTTTTTCAAAAAGCGCCGCTAATGCTCAACCTAATAACGAC
* *
27024642 GATTTTCAAAAAGCGCCGTTAATGC
1 GTTTTTCAAAAAGCGCCGCTAATGC
27024667 CACTAAAATG
Statistics
Matches: 58, Mismatches: 6, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
40 31 0.53
41 27 0.47
ACGTcount: A:0.30, C:0.25, G:0.18, T:0.27
Consensus pattern (41 bp):
GTTTTTCAAAAAGCGCCGCTAATGCTCAACCTAATAACGAC
Found at i:27024735 original size:154 final size:155
Alignment explanation
Indices: 27024488--27024781 Score: 362
Period size: 154 Copynumber: 1.9 Consensus size: 155
27024478 ATATAGCGGC
* * *
27024488 ATTTTACAAAAAGCGTCGTTAATGCCACTAAAGCTCAACATAAAACGACAGTGTCTTACTGAATT
1 ATTTTACAAAAAGCGCCGTTAATGCCACTAAAGATCAACATAAAACGACAGCGTCTTACTGAATT
* * * * *
27024553 TTTACGGGGTTTTTCAAAAAGCGCCGCTAATGCTCAATCTATAGCTGCGTTTTTCAAGAAGCGCC
66 TTTACGGCGTTTTTCAAAAAGCGCCGCTAATGCTCAACCTATAGCGGCATTTTTCAAAAAGCGCC
27024618 GCTAATGCTCAACCTAATAACGACG
131 GCTAATGCTCAACCTAATAACGACG
* * * * *
27024643 ATTTT-CAAAAAGCGCCGTTAATGCCACTAAA-ATGAACATAAAATGACGGCGT-TGTGCTTAAT
1 ATTTTACAAAAAGCGCCGTTAATGCCACTAAAGATCAACATAAAACGACAGCGTCT-TACTGAA-
* * * * *
27024705 TTTTTTGCGGCGTTTTT-AAAAGGCGCCGCTAATGGTCGACCTATAGCGGCATTTTTCAAAAAGT
64 -TTTTTACGGCGTTTTTCAAAAAGCGCCGCTAATGCTCAACCTATAGCGGCATTTTTCAAAAAGC
*
27024769 GTCGCTAATGCTC
128 GCCGCTAATGCTC
27024782 GATCTATAGA
Statistics
Matches: 117, Mismatches: 19, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
152 1 0.01
153 21 0.18
154 76 0.65
155 19 0.16
ACGTcount: A:0.31, C:0.21, G:0.19, T:0.29
Consensus pattern (155 bp):
ATTTTACAAAAAGCGCCGTTAATGCCACTAAAGATCAACATAAAACGACAGCGTCTTACTGAATT
TTTACGGCGTTTTTCAAAAAGCGCCGCTAATGCTCAACCTATAGCGGCATTTTTCAAAAAGCGCC
GCTAATGCTCAACCTAATAACGACG
Found at i:27024754 original size:39 final size:39
Alignment explanation
Indices: 27024711--27024801 Score: 101
Period size: 40 Copynumber: 2.3 Consensus size: 39
27024701 TAATTTTTTT
* * *
27024711 GCGGCGTTTTTAAAAGGCGCCGCTAATGGTCGACCTATA
1 GCGGCATTTTTAAAAAGCGCCGCTAATGCTCGACCTATA
* * *
27024750 GCGGCATTTTTCAAAAAGTGTCGCTAATGCTCGATCTATA
1 GCGGCATTTTT-AAAAAGCGCCGCTAATGCTCGACCTATA
* *
27024790 GAGGCTTTTTTA
1 GCGGCATTTTTA
27024802 TCCAAACACC
Statistics
Matches: 43, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
39 11 0.26
40 32 0.74
ACGTcount: A:0.24, C:0.20, G:0.24, T:0.32
Consensus pattern (39 bp):
GCGGCATTTTTAAAAAGCGCCGCTAATGCTCGACCTATA
Found at i:27034083 original size:30 final size:30
Alignment explanation
Indices: 27034049--27034108 Score: 120
Period size: 30 Copynumber: 2.0 Consensus size: 30
27034039 GAGTGAATGA
27034049 GAGATAGAATTAAATCTTATCGAGTCTATT
1 GAGATAGAATTAAATCTTATCGAGTCTATT
27034079 GAGATAGAATTAAATCTTATCGAGTCTATT
1 GAGATAGAATTAAATCTTATCGAGTCTATT
27034109 TTCACATGAA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.37, C:0.10, G:0.17, T:0.37
Consensus pattern (30 bp):
GAGATAGAATTAAATCTTATCGAGTCTATT
Found at i:27040740 original size:37 final size:37
Alignment explanation
Indices: 27040646--27040764 Score: 109
Period size: 37 Copynumber: 3.2 Consensus size: 37
27040636 CCAACTGAAG
*
27040646 CACGCCAATTGCT-TGTAAGAGCTAATCCAACCGATAA
1 CACGCCAATTGCTCAG-AAGAGCTAATCCAACCGATAA
* * * *
27040683 CACCCCTGA-TACTCATAAGAGCTAATCC-ACACGATAA
1 CACGCC-AATTGCTCAGAAGAGCTAATCCAAC-CGATAA
* * *
27040720 CACGCCAATTGCTCCGAAGAGCTAGTCCAACCGAAAA
1 CACGCCAATTGCTCAGAAGAGCTAATCCAACCGATAA
*
27040757 CACACCAA
1 CACGCCAA
27040765 AACAAAGAGT
Statistics
Matches: 64, Mismatches: 13, Indels: 10
0.74 0.15 0.11
Matches are distributed among these distances:
36 3 0.05
37 58 0.91
38 3 0.05
ACGTcount: A:0.37, C:0.32, G:0.14, T:0.17
Consensus pattern (37 bp):
CACGCCAATTGCTCAGAAGAGCTAATCCAACCGATAA
Found at i:27050241 original size:20 final size:21
Alignment explanation
Indices: 27050216--27050256 Score: 59
Period size: 20 Copynumber: 2.0 Consensus size: 21
27050206 TTTATCATAC
27050216 ATGTC-AAATCTTTTA-GATTT
1 ATGTCAAAAT-TTTTAGGATTT
27050236 ATGTCAAAATTTTTAGGATTT
1 ATGTCAAAATTTTTAGGATTT
27050257 CAATTTGTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 10 0.53
21 9 0.47
ACGTcount: A:0.32, C:0.07, G:0.12, T:0.49
Consensus pattern (21 bp):
ATGTCAAAATTTTTAGGATTT
Found at i:27050262 original size:27 final size:27
Alignment explanation
Indices: 27050232--27050283 Score: 68
Period size: 27 Copynumber: 1.9 Consensus size: 27
27050222 AATCTTTTAG
*
27050232 ATTTATGTCAAAATTTTTAGGATTTCA
1 ATTTATGTCAAAATTTTAAGGATTTCA
* * *
27050259 ATTTGTTTTAAAATTTTAAGGATTT
1 ATTTATGTCAAAATTTTAAGGATTT
27050284 AAAATATTTA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 21 1.00
ACGTcount: A:0.33, C:0.04, G:0.12, T:0.52
Consensus pattern (27 bp):
ATTTATGTCAAAATTTTAAGGATTTCA
Found at i:27061467 original size:25 final size:25
Alignment explanation
Indices: 27061421--27061469 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 25
27061411 CTATTTTTGA
* *
27061421 TAGTATATCCTAAAACTGCTATAGG
1 TAGTATATACTAAAACTACTATAGG
* *
27061446 TAGTATATACTGAGACTACTATAG
1 TAGTATATACTAAAACTACTATAG
27061470 ATAGACTGTA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.37, C:0.14, G:0.16, T:0.33
Consensus pattern (25 bp):
TAGTATATACTAAAACTACTATAGG
Found at i:27069933 original size:23 final size:24
Alignment explanation
Indices: 27069899--27069943 Score: 74
Period size: 23 Copynumber: 1.9 Consensus size: 24
27069889 ATAACATAGC
*
27069899 TAAATTATATATAATATTTTTTCA
1 TAAATTATATATAATAATTTTTCA
27069923 TAAA-TATATATAATAATTTTT
1 TAAATTATATATAATAATTTTT
27069944 GCTCCCACTT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
23 16 0.80
24 4 0.20
ACGTcount: A:0.44, C:0.02, G:0.00, T:0.53
Consensus pattern (24 bp):
TAAATTATATATAATAATTTTTCA
Found at i:27070726 original size:2 final size:2
Alignment explanation
Indices: 27070715--27070759 Score: 83
Period size: 2 Copynumber: 23.0 Consensus size: 2
27070705 ATTATTGGCT
27070715 TA TA -A TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
27070756 TA TA
1 TA TA
27070760 AAAGCAAGGC
Statistics
Matches: 42, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
1 1 0.02
2 41 0.98
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
TA
Found at i:27072193 original size:14 final size:13
Alignment explanation
Indices: 27072174--27072203 Score: 51
Period size: 14 Copynumber: 2.2 Consensus size: 13
27072164 TGATAAAGTT
27072174 TATATAAATATAAA
1 TATATAAAT-TAAA
27072188 TATATAAATTAAA
1 TATATAAATTAAA
27072201 TAT
1 TAT
27072204 GAATGATTAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 7 0.44
14 9 0.56
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (13 bp):
TATATAAATTAAA
Found at i:27077044 original size:5 final size:5
Alignment explanation
Indices: 27077034--27077065 Score: 64
Period size: 5 Copynumber: 6.4 Consensus size: 5
27077024 TGACATGTAT
27077034 TAAAA TAAAA TAAAA TAAAA TAAAA TAAAA TA
1 TAAAA TAAAA TAAAA TAAAA TAAAA TAAAA TA
27077066 TTATTTATTT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 27 1.00
ACGTcount: A:0.78, C:0.00, G:0.00, T:0.22
Consensus pattern (5 bp):
TAAAA
Found at i:27081223 original size:43 final size:43
Alignment explanation
Indices: 27081160--27081306 Score: 149
Period size: 43 Copynumber: 3.4 Consensus size: 43
27081150 TCCTGAGGTG
*
27081160 TGATTTCATGTAAGACCATGTTTGGGACATTTGCATCGATATGA
1 TGATTACATGTAAGACCATGTTTGGGACA-TTGCATCGATATGA
* * *
27081204 -GATTACGTGTAAGATCATGTCTGGGACATTGACATC-ATAT-A
1 TGATTACATGTAAGACCATGTTTGGGACATTG-CATCGATATGA
* * * *
27081245 TGATTTCATATAAGACCTTGTTTGGGACAGTGGCATCGATATG-
1 TGATTACATGTAAGACCATGTTTGGGACA-TTGCATCGATATGA
* *
27081288 TGATAACAAGTAAGACCAT
1 TGATTACATGTAAGACCAT
27081307 ATCTAGGATA
Statistics
Matches: 82, Mismatches: 16, Indels: 11
0.75 0.15 0.10
Matches are distributed among these distances:
41 1 0.01
42 33 0.40
43 48 0.59
ACGTcount: A:0.31, C:0.14, G:0.22, T:0.33
Consensus pattern (43 bp):
TGATTACATGTAAGACCATGTTTGGGACATTGCATCGATATGA
Found at i:27083185 original size:14 final size:14
Alignment explanation
Indices: 27083166--27083199 Score: 68
Period size: 14 Copynumber: 2.4 Consensus size: 14
27083156 TGATGATGAA
27083166 TGTATCAAATGTGT
1 TGTATCAAATGTGT
27083180 TGTATCAAATGTGT
1 TGTATCAAATGTGT
27083194 TGTATC
1 TGTATC
27083200 TTTTTTAAGG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.26, C:0.09, G:0.21, T:0.44
Consensus pattern (14 bp):
TGTATCAAATGTGT
Found at i:27089143 original size:10 final size:10
Alignment explanation
Indices: 27089100--27089134 Score: 52
Period size: 10 Copynumber: 3.5 Consensus size: 10
27089090 ATGCATTAAC
*
27089100 CACATATAGT
1 CACATATAAT
*
27089110 CACAAATAAT
1 CACATATAAT
27089120 CACATATAAT
1 CACATATAAT
27089130 CACAT
1 CACAT
27089135 TTAGTCACAA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
10 22 1.00
ACGTcount: A:0.49, C:0.23, G:0.03, T:0.26
Consensus pattern (10 bp):
CACATATAAT
Found at i:27091454 original size:26 final size:27
Alignment explanation
Indices: 27091397--27091529 Score: 103
Period size: 27 Copynumber: 5.0 Consensus size: 27
27091387 TAAAATTATT
* * * *
27091397 GAAATACCCTTGAAGGGTAAAATAATC
1 GAAATACCCTCGATGGGTAAAATGACC
*
27091424 AAAATACCCTCGATGGGT-AAATGACC
1 GAAATACCCTCGATGGGTAAAATGACC
*
27091450 GAAATACCTTCGATGGGTAAAATGACC
1 GAAATACCCTCGATGGGTAAAATGACC
* **
27091477 GTAATGGTCCT-G-TAGGGTAAAATGACC
1 GAAAT-ACCCTCGAT-GGGTAAAATGACC
* * *
27091504 GTAATGCCC-CTATAGGGTAAAATGAC
1 GAAATACCCTCGAT-GGGTAAAATGAC
27091530 TGTAACACCC
Statistics
Matches: 88, Mismatches: 13, Indels: 10
0.79 0.12 0.09
Matches are distributed among these distances:
26 26 0.30
27 60 0.68
28 2 0.02
ACGTcount: A:0.37, C:0.18, G:0.23, T:0.23
Consensus pattern (27 bp):
GAAATACCCTCGATGGGTAAAATGACC
Found at i:27091494 original size:27 final size:27
Alignment explanation
Indices: 27091464--27091664 Score: 276
Period size: 27 Copynumber: 7.4 Consensus size: 27
27091454 TACCTTCGAT
** *
27091464 GGGTAAAATGACCGTAATGGTCCTGTA
1 GGGTAAAATGACCGTAATGCCCCTATA
27091491 GGGTAAAATGACCGTAATGCCCCTATA
1 GGGTAAAATGACCGTAATGCCCCTATA
* ** *
27091518 GGGTAAAATGACTGTAACACCCCTGTA
1 GGGTAAAATGACCGTAATGCCCCTATA
*
27091545 GGGTAAAATGACCGTAATGCACCTATA
1 GGGTAAAATGACCGTAATGCCCCTATA
*
27091572 GGGTAAAATAACCGTAATGCCCCTATA
1 GGGTAAAATGACCGTAATGCCCCTATA
* * *
27091599 GGGTAAAATAACTGTAATGCCCCTGTA
1 GGGTAAAATGACCGTAATGCCCCTATA
**
27091626 GGGTAAAATGATTGTAATGCCCCTATA
1 GGGTAAAATGACCGTAATGCCCCTATA
27091653 GGGTAAAATGAC
1 GGGTAAAATGAC
27091665 TATTTTGCCC
Statistics
Matches: 154, Mismatches: 20, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 154 1.00
ACGTcount: A:0.34, C:0.18, G:0.23, T:0.24
Consensus pattern (27 bp):
GGGTAAAATGACCGTAATGCCCCTATA
Found at i:27091676 original size:81 final size:81
Alignment explanation
Indices: 27091464--27091664 Score: 312
Period size: 81 Copynumber: 2.5 Consensus size: 81
27091454 TACCTTCGAT
** * *
27091464 GGGTAAAATGACCGTAATGGTCCTGTAGGGTAAAATGACCGTAATGCCCCTATAGGGTAAAATGA
1 GGGTAAAATGACCGTAATGCACCTATAGGGTAAAATGACCGTAATGCCCCTATAGGGTAAAATAA
27091529 CTGTAACACCCCTGTA
66 CTGTAACACCCCTGTA
*
27091545 GGGTAAAATGACCGTAATGCACCTATAGGGTAAAATAACCGTAATGCCCCTATAGGGTAAAATAA
1 GGGTAAAATGACCGTAATGCACCTATAGGGTAAAATGACCGTAATGCCCCTATAGGGTAAAATAA
**
27091610 CTGTAATGCCCCTGTA
66 CTGTAACACCCCTGTA
** *
27091626 GGGTAAAATGATTGTAATGCCCCTATAGGGTAAAATGAC
1 GGGTAAAATGACCGTAATGCACCTATAGGGTAAAATGAC
27091665 TATTTTGCCC
Statistics
Matches: 109, Mismatches: 11, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
81 109 1.00
ACGTcount: A:0.34, C:0.18, G:0.23, T:0.24
Consensus pattern (81 bp):
GGGTAAAATGACCGTAATGCACCTATAGGGTAAAATGACCGTAATGCCCCTATAGGGTAAAATAA
CTGTAACACCCCTGTA
Found at i:27091716 original size:24 final size:24
Alignment explanation
Indices: 27091681--27091789 Score: 96
Period size: 24 Copynumber: 4.6 Consensus size: 24
27091671 GCCCCTTGGG
*
27091681 GTAAA-GATTGATTTGTCTGTGAT
1 GTAAATGACTGATTTGTCTGTGAT
* * ***
27091704 GTAAATAAATGATTTGTCCAAGAT
1 GTAAATGACTGATTTGTCTGTGAT
*
27091728 GTAAATGACTGATTTGTTTGTGAT
1 GTAAATGACTGATTTGTCTGTGAT
*
27091752 TTAAATGACTGATTT-TCCTGTGAT
1 GTAAATGACTGATTTGT-CTGTGAT
* **
27091776 TTGTATGACTGATT
1 GTAAATGACTGATT
27091790 CCGTGCATGG
Statistics
Matches: 69, Mismatches: 15, Indels: 3
0.79 0.17 0.03
Matches are distributed among these distances:
23 6 0.09
24 63 0.91
ACGTcount: A:0.28, C:0.07, G:0.21, T:0.43
Consensus pattern (24 bp):
GTAAATGACTGATTTGTCTGTGAT
Found at i:27091891 original size:27 final size:27
Alignment explanation
Indices: 27091853--27091923 Score: 85
Period size: 27 Copynumber: 2.7 Consensus size: 27
27091843 ATGGAAGAAG
*
27091853 TACTG-TACTGGTGGCTCT-GCCACA-A
1 TACTGTTACTGGTAGCT-TGGCCACATA
27091878 TCACTGTTACTGGTAGCTTGGCCACATA
1 T-ACTGTTACTGGTAGCTTGGCCACATA
*
27091906 TACTGTTACTGGCAGCTT
1 TACTGTTACTGGTAGCTT
27091924 TGCTACGATG
Statistics
Matches: 40, Mismatches: 2, Indels: 6
0.83 0.04 0.12
Matches are distributed among these distances:
25 1 0.03
26 5 0.12
27 32 0.80
28 2 0.05
ACGTcount: A:0.20, C:0.25, G:0.23, T:0.32
Consensus pattern (27 bp):
TACTGTTACTGGTAGCTTGGCCACATA
Found at i:27091989 original size:32 final size:32
Alignment explanation
Indices: 27091938--27092124 Score: 221
Period size: 32 Copynumber: 5.8 Consensus size: 32
27091928 ACGATGCTAT
* * * *
27091938 TGATGGCTTTCTGCAGATCATATTACCATTAC
1 TGATGGCTGTGTGCCGATCATATTACTATTAC
* * *
27091970 TGGTGGCTATGTGCCGATCATATTACCATTAC
1 TGATGGCTGTGTGCCGATCATATTACTATTAC
* * * *
27092002 TGATGGTTGTCTGCCGATTATATTACTACTAC
1 TGATGGCTGTGTGCCGATCATATTACTATTAC
* *
27092034 TGATGGCTTTGTGCCGATCATACTACTATTAC
1 TGATGGCTGTGTGCCGATCATATTACTATTAC
* *
27092066 TGATGGTTGTGTGCCGATCATATTACTACTAC
1 TGATGGCTGTGTGCCGATCATATTACTATTAC
* *
27092098 TGATGGCTTTGTGCCAATCATATTACT
1 TGATGGCTGTGTGCCGATCATATTACT
27092125 GTACTTATGG
Statistics
Matches: 131, Mismatches: 24, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
32 131 1.00
ACGTcount: A:0.22, C:0.20, G:0.19, T:0.38
Consensus pattern (32 bp):
TGATGGCTGTGTGCCGATCATATTACTATTAC
Found at i:27092025 original size:64 final size:64
Alignment explanation
Indices: 27091938--27092123 Score: 266
Period size: 64 Copynumber: 2.9 Consensus size: 64
27091928 ACGATGCTAT
* * * * *
27091938 TGATGGCTT-TCTGCAGATCATATTACCATTACTGGTGGCTATGTGCCGATCATATTACCATTAC
1 TGATGG-TTGTCTGCCGATCATATTACTACTACTGATGGCTTTGTGCCGATCATATTACCATTAC
* * *
27092002 TGATGGTTGTCTGCCGATTATATTACTACTACTGATGGCTTTGTGCCGATCATACTACTATTAC
1 TGATGGTTGTCTGCCGATCATATTACTACTACTGATGGCTTTGTGCCGATCATATTACCATTAC
* *
27092066 TGATGGTTGTGTGCCGATCATATTACTACTACTGATGGCTTTGTGCCAATCATATTAC
1 TGATGGTTGTCTGCCGATCATATTACTACTACTGATGGCTTTGTGCCGATCATATTAC
27092124 TGTACTTATG
Statistics
Matches: 109, Mismatches: 12, Indels: 2
0.89 0.10 0.02
Matches are distributed among these distances:
63 2 0.02
64 107 0.98
ACGTcount: A:0.23, C:0.20, G:0.19, T:0.38
Consensus pattern (64 bp):
TGATGGTTGTCTGCCGATCATATTACTACTACTGATGGCTTTGTGCCGATCATATTACCATTAC
Found at i:27092102 original size:96 final size:95
Alignment explanation
Indices: 27091938--27092137 Score: 249
Period size: 96 Copynumber: 2.1 Consensus size: 95
27091928 ACGATGCTAT
* * *
27091938 TGATGGCTTTCTGCAGATCATATTACCATTACTGGTGGCTATGTGCCGATCATATTACCATTACT
1 TGATGGCTTTCTGCAGATCATACTACCATTACTGATGGCTATGTGCCGATCATATTACCACTACT
* *
27092003 GATGG-TTGTCTGCCGATTATATTACTACTAC
66 GATGGCTT-TCTGCCAATCATATTACT-CTAC
* * * * * *
27092034 TGATGGCTTTGTGCCGATCATACTACTATTACTGATGGTTGTGTGCCGATCATATTACTACTACT
1 TGATGGCTTTCTGCAGATCATACTACCATTACTGATGGCTATGTGCCGATCATATTACCACTACT
* *
27092099 GATGGCTTTGTGCCAATCATATTACTGTAC
66 GATGGCTTTCTGCCAATCATATTACTCTAC
*
27092129 TTATGGCTT
1 TGATGGCTT
27092138 GTAGCCATTC
Statistics
Matches: 89, Mismatches: 14, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
95 11 0.12
96 76 0.85
97 2 0.02
ACGTcount: A:0.22, C:0.20, G:0.20, T:0.39
Consensus pattern (95 bp):
TGATGGCTTTCTGCAGATCATACTACCATTACTGATGGCTATGTGCCGATCATATTACCACTACT
GATGGCTTTCTGCCAATCATATTACTCTAC
Found at i:27092154 original size:22 final size:21
Alignment explanation
Indices: 27092129--27092202 Score: 67
Period size: 22 Copynumber: 3.3 Consensus size: 21
27092119 ATTACTGTAC
27092129 TTATGGCTTGTAGCCATTCTGT
1 TTATGGCTT-TAGCCATTCTGT
* * *
27092151 TTATAGCTTATAGCTATCCTGT
1 TTATGGCTT-TAGCCATTCTGT
* *
27092173 TTATGGCTCTTAACCATTCTGG
1 TTATGGCT-TTAGCCATTCTGT
27092195 TTACTGGC
1 TTA-TGGC
27092203 AGCTTTGCTG
Statistics
Matches: 41, Mismatches: 9, Indels: 3
0.77 0.17 0.06
Matches are distributed among these distances:
22 36 0.88
23 5 0.12
ACGTcount: A:0.18, C:0.20, G:0.19, T:0.43
Consensus pattern (21 bp):
TTATGGCTTTAGCCATTCTGT
Found at i:27093652 original size:50 final size:50
Alignment explanation
Indices: 27093532--27093669 Score: 145
Period size: 50 Copynumber: 2.8 Consensus size: 50
27093522 ACTGCCAATA
* * * * *
27093532 CCATATCCCAGATATGGTCTTACATGGGAGTTCTCATACCGGTACCCATG
1 CCATGTCCCTGATATGGTCTTACATGGGACTTCTCATACCGGTACCAACG
* * ** *
27093582 CCATGT-CCTAGACATAGTCTTACGGGGGACTTCTCAT-CTCGGTGCCAACG
1 CCATGTCCCT-GATATGGTCTTACATGGGACTTCTCATAC-CGGTACCAACG
*
27093632 CCATGTCCCTGATATGGTCTTACATGGGACCTCTCATA
1 CCATGTCCCTGATATGGTCTTACATGGGACTTCTCATA
27093670 ACCTCAATAA
Statistics
Matches: 69, Mismatches: 15, Indels: 7
0.76 0.16 0.08
Matches are distributed among these distances:
49 3 0.04
50 63 0.91
51 3 0.04
ACGTcount: A:0.22, C:0.29, G:0.21, T:0.28
Consensus pattern (50 bp):
CCATGTCCCTGATATGGTCTTACATGGGACTTCTCATACCGGTACCAACG
Found at i:27100854 original size:27 final size:27
Alignment explanation
Indices: 27100816--27100872 Score: 114
Period size: 27 Copynumber: 2.1 Consensus size: 27
27100806 TCTGAGAGAT
27100816 ATGGAACCTAAGCTCTGATACCACCAA
1 ATGGAACCTAAGCTCTGATACCACCAA
27100843 ATGGAACCTAAGCTCTGATACCACCAA
1 ATGGAACCTAAGCTCTGATACCACCAA
27100870 ATG
1 ATG
27100873 TAACACCCCA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.37, C:0.28, G:0.16, T:0.19
Consensus pattern (27 bp):
ATGGAACCTAAGCTCTGATACCACCAA
Found at i:27101793 original size:49 final size:50
Alignment explanation
Indices: 27101718--27101813 Score: 167
Period size: 49 Copynumber: 1.9 Consensus size: 50
27101708 TGCAACTACT
27101718 TTACAAAGGATAAAATGGAGTAGGGGAGCTTAACAAGCTCTGTGAATGCC
1 TTACAAAGGATAAAATGGAGTAGGGGAGCTTAACAAGCTCTGTGAATGCC
* *
27101768 TTAC-AAGGATACAATGGAGTGGGGGAGCTTAACAAGCTCTGTGAAT
1 TTACAAAGGATAAAATGGAGTAGGGGAGCTTAACAAGCTCTGTGAAT
27101814 ACCTAGAAAA
Statistics
Matches: 44, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
49 40 0.91
50 4 0.09
ACGTcount: A:0.34, C:0.14, G:0.29, T:0.23
Consensus pattern (50 bp):
TTACAAAGGATAAAATGGAGTAGGGGAGCTTAACAAGCTCTGTGAATGCC
Found at i:27102034 original size:10 final size:10
Alignment explanation
Indices: 27101991--27102025 Score: 61
Period size: 10 Copynumber: 3.5 Consensus size: 10
27101981 ATGCATTAAC
27101991 CACATATAAT
1 CACATATAAT
*
27102001 CACAAATAAT
1 CACATATAAT
27102011 CACATATAAT
1 CACATATAAT
27102021 CACAT
1 CACAT
27102026 CTAGTCACAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
10 23 1.00
ACGTcount: A:0.51, C:0.23, G:0.00, T:0.26
Consensus pattern (10 bp):
CACATATAAT
Found at i:27102455 original size:21 final size:21
Alignment explanation
Indices: 27102429--27102477 Score: 57
Period size: 21 Copynumber: 2.4 Consensus size: 21
27102419 TTACAACAGG
27102429 CATCACAACAT-ATTCATATTT
1 CATCACAACATAATTC-TATTT
* *
27102450 CATCACATCATAATTCTCTTT
1 CATCACAACATAATTCTATTT
27102471 -ATCACAA
1 CATCACAA
27102478 TTCATAAACA
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
20 6 0.25
21 14 0.58
22 4 0.17
ACGTcount: A:0.37, C:0.27, G:0.00, T:0.37
Consensus pattern (21 bp):
CATCACAACATAATTCTATTT
Found at i:27105911 original size:50 final size:50
Alignment explanation
Indices: 27105838--27105937 Score: 173
Period size: 50 Copynumber: 2.0 Consensus size: 50
27105828 ATTGAAATGG
* *
27105838 ATAATATATGTATAAGAGATATAATTATATGTTGTGTTCATTCTTGATTA
1 ATAATACATGTATAAGAGATATAATTATATGTTGTGTTCATTCTTAATTA
*
27105888 ATAATACATGTATATGAGATATAATTATATGTTGTGTTCATTCTTAATTA
1 ATAATACATGTATAAGAGATATAATTATATGTTGTGTTCATTCTTAATTA
27105938 CATAGCCTAT
Statistics
Matches: 47, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
50 47 1.00
ACGTcount: A:0.36, C:0.05, G:0.13, T:0.46
Consensus pattern (50 bp):
ATAATACATGTATAAGAGATATAATTATATGTTGTGTTCATTCTTAATTA
Found at i:27127394 original size:41 final size:41
Alignment explanation
Indices: 27127336--27127542 Score: 245
Period size: 41 Copynumber: 5.0 Consensus size: 41
27127326 AAAGTATATC
* * *
27127336 CAAGGGTACGGAAGTACAAATAGGGGCATGTATGTGCAATT
1 CAAGGGTACCGAAGTACAAACAGGGGCACGTATGTGCAATT
* * * * * *
27127377 TAAGGGTACTGAAGTAC-AACTAGGGGCAAGGATGTGGAACT
1 CAAGGGTACCGAAGTACAAAC-AGGGGCACGTATGTGCAATT
* *
27127418 CAGGGGTACCGAAGTACAAACAGGGGCACGTATCTGCAATT
1 CAAGGGTACCGAAGTACAAACAGGGGCACGTATGTGCAATT
* * *
27127459 CAAGGGTACCGAATTACAAACAAGGGCACGTATATGCAATT
1 CAAGGGTACCGAAGTACAAACAGGGGCACGTATGTGCAATT
* * *
27127500 CAAGGGTACTGAAGTACAAACAGGGTCACGTATGTCCAATT
1 CAAGGGTACCGAAGTACAAACAGGGGCACGTATGTGCAATT
27127541 CA
1 CA
27127543 TCATTATACC
Statistics
Matches: 139, Mismatches: 25, Indels: 4
0.83 0.15 0.02
Matches are distributed among these distances:
40 2 0.01
41 134 0.96
42 3 0.02
ACGTcount: A:0.35, C:0.17, G:0.28, T:0.20
Consensus pattern (41 bp):
CAAGGGTACCGAAGTACAAACAGGGGCACGTATGTGCAATT
Found at i:27127505 original size:21 final size:20
Alignment explanation
Indices: 27127441--27127505 Score: 60
Period size: 21 Copynumber: 3.1 Consensus size: 20
27127431 GTACAAACAG
27127441 GGGCACGTATCTGCAATTCAA
1 GGGCACGTAT-TGCAATTCAA
* * * *
27127462 GGGTACCGAATTACAA-ACAA
1 GGGCA-CGTATTGCAATTCAA
27127482 GGGCACGTATATGCAATTCAA
1 GGGCACGTAT-TGCAATTCAA
27127503 GGG
1 GGG
27127506 TACTGAAGTA
Statistics
Matches: 33, Mismatches: 8, Indels: 6
0.70 0.17 0.13
Matches are distributed among these distances:
19 4 0.12
20 11 0.33
21 14 0.42
22 4 0.12
ACGTcount: A:0.34, C:0.20, G:0.26, T:0.20
Consensus pattern (20 bp):
GGGCACGTATTGCAATTCAA
Found at i:27129762 original size:27 final size:25
Alignment explanation
Indices: 27129704--27129772 Score: 81
Period size: 25 Copynumber: 2.8 Consensus size: 25
27129694 GCTCATACAT
*
27129704 GCTGAATATCGATAAGCTCTCTCGA
1 GCTGAATATCGATAAGCTCTCTCAA
27129729 GCTGAATATC-AGTAAGCTCTCTCAA
1 GCTGAATATCGA-TAAGCTCTCTCAA
*
27129754 GCT-AAGAATCGATAA-CTCT
1 GCTGAA-TATCGATAAGCTCT
27129773 AATGACATGT
Statistics
Matches: 39, Mismatches: 2, Indels: 7
0.81 0.04 0.15
Matches are distributed among these distances:
24 7 0.18
25 31 0.79
26 1 0.03
ACGTcount: A:0.32, C:0.23, G:0.17, T:0.28
Consensus pattern (25 bp):
GCTGAATATCGATAAGCTCTCTCAA
Found at i:27131173 original size:20 final size:20
Alignment explanation
Indices: 27131126--27131174 Score: 57
Period size: 19 Copynumber: 2.5 Consensus size: 20
27131116 CATTTTGCAC
*
27131126 ATATGACCAAGACATCATAA
1 ATATGACCAAAACATCATAA
*
27131146 ACAT-ACCAAAACATACAT-A
1 ATATGACCAAAACAT-CATAA
27131165 ATATGACCAA
1 ATATGACCAA
27131175 TTCAAATGAC
Statistics
Matches: 24, Mismatches: 3, Indels: 4
0.77 0.10 0.13
Matches are distributed among these distances:
19 13 0.54
20 11 0.46
ACGTcount: A:0.53, C:0.22, G:0.06, T:0.18
Consensus pattern (20 bp):
ATATGACCAAAACATCATAA
Found at i:27133044 original size:138 final size:136
Alignment explanation
Indices: 27132779--27133047 Score: 315
Period size: 137 Copynumber: 2.0 Consensus size: 136
27132769 CGAGCCATAA
* * * * * **
27132779 ATGGGTCTGTTAACACAAGCTGACGGTCAAAATATAGCTACATGATGTCGCTTACACAAGCTGGC
1 ATGGGTCTGCTAACACAAGCTAACAGTCAAAATATAGCTACACGATGTCGCTCACACAAGCTAAC
* * * *
27132844 GATTATCCATAAAAAATGTCGATCTCAGCAATCGGTAGGACATTCAAGTCCAGCACCTGAAACAT
66 GAGTATCCACAAAAAATGTCGAACTCAGCAATCGGTAGGACATTCAAGACCAGCACCTGAAACAT
27132909 GGTAAC
131 GGTAAC
* * * *
27132915 ATGGGTCTGCTCACACAAGCTAATAGTCAAAATTTAAGCTACACGATGTTGCTCACACAAGCTAA
1 ATGGGTCTGCTAACACAAGCTAACAGTCAAAATAT-AGCTACACGATGTCGCTCACACAAGCTAA
* * * * * *
27132980 TGAGTATCCGCAACAAATGCTGGAACTCAGCCATCGGTAGGATATTCAAGACCAGCA-CTCGAAA
65 CGAGTATCCACAAAAAATG-TCGAACTCAGCAATCGGTAGGACATTCAAGACCAGCACCT-GAAA
27133044 CATG
128 CATG
27133048 AAAACCCTAA
Statistics
Matches: 109, Mismatches: 21, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
136 29 0.27
137 40 0.37
138 40 0.37
ACGTcount: A:0.34, C:0.23, G:0.20, T:0.23
Consensus pattern (136 bp):
ATGGGTCTGCTAACACAAGCTAACAGTCAAAATATAGCTACACGATGTCGCTCACACAAGCTAAC
GAGTATCCACAAAAAATGTCGAACTCAGCAATCGGTAGGACATTCAAGACCAGCACCTGAAACAT
GGTAAC
Found at i:27133220 original size:30 final size:30
Alignment explanation
Indices: 27133186--27133253 Score: 136
Period size: 30 Copynumber: 2.3 Consensus size: 30
27133176 ATATATATTG
27133186 ATTCATTTACATTAGAACAACACATTAAGC
1 ATTCATTTACATTAGAACAACACATTAAGC
27133216 ATTCATTTACATTAGAACAACACATTAAGC
1 ATTCATTTACATTAGAACAACACATTAAGC
27133246 ATTCATTT
1 ATTCATTT
27133254 TAATCAACAT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 38 1.00
ACGTcount: A:0.41, C:0.19, G:0.06, T:0.34
Consensus pattern (30 bp):
ATTCATTTACATTAGAACAACACATTAAGC
Found at i:27134794 original size:26 final size:26
Alignment explanation
Indices: 27134758--27134824 Score: 107
Period size: 26 Copynumber: 2.6 Consensus size: 26
27134748 TACATCATTA
*
27134758 CTCACACGAGCTGTGAAATGGGCCTG
1 CTCACACGAGCTGTGAAATAGGCCTG
*
27134784 CTCACACGAGCTATGAAATAGGCCTG
1 CTCACACGAGCTGTGAAATAGGCCTG
*
27134810 CTCACACGAGTTGTG
1 CTCACACGAGCTGTG
27134825 GAGAGTCCAC
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 37 1.00
ACGTcount: A:0.25, C:0.27, G:0.27, T:0.21
Consensus pattern (26 bp):
CTCACACGAGCTGTGAAATAGGCCTG
Found at i:27135716 original size:260 final size:260
Alignment explanation
Indices: 27135255--27135779 Score: 924
Period size: 260 Copynumber: 2.0 Consensus size: 260
27135245 AGGACAATAG
*
27135255 TTTTAGGACCACAAATCTGACAAGCAAATTATTATTATTTATGATTTTAATGTTTATGAGATGTT
1 TTTTAGGACCACAAATCTGACAAGCAAATTATTATTATTTATGAGTTTAATGTTTATGAGATGTT
27135320 AGTAAGGTCGTATTAATGTTTGCATGACTAATTAAGTAAAAAGAACTAAATCGTAAAAGGTTCAA
66 AGTAAGGTCGTATTAATGTTTGCATGACTAATTAAGTAAAAAGAACTAAATCGTAAAAGGTTCAA
*
27135385 AAGTAGAGTTCTATTAGTTAAAGGTGTCAAATGGCTATGAAACTTTATAGTGAGAGGACTTATAT
131 AAGTAGAGTTCTATTAGTTAAAGGTGTCAAATGGCTATGAAACTTTAAAGTGAGAGGACTTATAT
* *
27135450 GGTAATTAGACCATTTGTGTGGTTAGGGGATATTCATGGAAAGGTTTGTTTGAAATTTTTAATGC
196 GGTAATTAGACCATTTGTGTGGTTAAGGGATATTCATGGAAAGGTTTGTTTGAAATTTTGAATGC
** * * * *
27135515 TTTTAGGACCACAAATCTGATGAGTAAATTATTATTTTTTATTAGTTTAATGTTTATGGGATGTT
1 TTTTAGGACCACAAATCTGACAAGCAAATTATTATTATTTATGAGTTTAATGTTTATGAGATGTT
* * * *
27135580 AGTAAGGTCGTATTGATGTTTGCATGATTAATTAAGTAAAAAGGACTAAATTGTAAAAGGTTCAA
66 AGTAAGGTCGTATTAATGTTTGCATGACTAATTAAGTAAAAAGAACTAAATCGTAAAAGGTTCAA
27135645 AAGTAGAGTTCTATTAGTTAAAGGTGTCAAATGGCTATGAAACTTTAAAGTGAGAGGACTTATAT
131 AAGTAGAGTTCTATTAGTTAAAGGTGTCAAATGGCTATGAAACTTTAAAGTGAGAGGACTTATAT
27135710 GGTAATTAGACCATTTGTGTGGTTAAGGGATATTCATGGAAAGGTTTGTTTGAAATTTTGAATGC
196 GGTAATTAGACCATTTGTGTGGTTAAGGGATATTCATGGAAAGGTTTGTTTGAAATTTTGAATGC
27135775 TTTTA
1 TTTTA
27135780 AAGGTTAAAA
Statistics
Matches: 251, Mismatches: 14, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
260 251 1.00
ACGTcount: A:0.34, C:0.07, G:0.21, T:0.38
Consensus pattern (260 bp):
TTTTAGGACCACAAATCTGACAAGCAAATTATTATTATTTATGAGTTTAATGTTTATGAGATGTT
AGTAAGGTCGTATTAATGTTTGCATGACTAATTAAGTAAAAAGAACTAAATCGTAAAAGGTTCAA
AAGTAGAGTTCTATTAGTTAAAGGTGTCAAATGGCTATGAAACTTTAAAGTGAGAGGACTTATAT
GGTAATTAGACCATTTGTGTGGTTAAGGGATATTCATGGAAAGGTTTGTTTGAAATTTTGAATGC
Found at i:27141525 original size:50 final size:50
Alignment explanation
Indices: 27141457--27141645 Score: 209
Period size: 51 Copynumber: 3.7 Consensus size: 50
27141447 ATTATTATCA
* * * *
27141457 TTCGATACATGTAGTAGCCTTCACATAGTACTACACAGGTGATCAAACTT
1 TTCGATACACGTAGTAGCCTGCACATAGTACTACACATGTGACCAAACTT
* * *
27141507 TTCGATTCACGTAATAGCCTGCACATAGTACTACACATGTGACCAAAGCCT
1 TTCGATACACGTAGTAGCCTGCACATAGTACTACACATGTGACCAAA-CTT
* * * * * *
27141558 TCCGGTGCACATAGTAACCTGCACATAGTACTACACATGTGACCATTA-TCT
1 TTCGATACACGTAGTAGCCTGCACATAGTACTACACATGTGACCA-AACT-T
* *
27141609 ATCGATACACGTAGTAGCCTGCACTTAGTACTACACA
1 TTCGATACACGTAGTAGCCTGCACATAGTACTACACA
27141646 CGTCTTTATA
Statistics
Matches: 114, Mismatches: 22, Indels: 5
0.81 0.16 0.04
Matches are distributed among these distances:
50 41 0.36
51 72 0.63
52 1 0.01
ACGTcount: A:0.31, C:0.26, G:0.16, T:0.27
Consensus pattern (50 bp):
TTCGATACACGTAGTAGCCTGCACATAGTACTACACATGTGACCAAACTT
Found at i:27149251 original size:51 final size:51
Alignment explanation
Indices: 27149123--27149300 Score: 173
Period size: 51 Copynumber: 3.5 Consensus size: 51
27149113 TAAACGTAGT
* * * * *
27149123 AGCCTTCACATAGTACTACACACGTGATC-AAACTTTCTGGTTCACGTAGC
1 AGCCTACACATAGTACTACACACGTGACCAAAACTTTCCGGTACACATAGC
27149173 AGCCTACACATAGTACTACACACGTGACCAAAGAC-TTCCGGTACACATAGC
1 AGCCTACACATAGTACTACACACGTGACCAAA-ACTTTCCGGTACACATAGC
** * * * * * * * *
27149224 AGCCTGGACATAGTACTCCACATGTGACCATTATCTAT-CGATACACGTAGT
1 AGCCTACACATAGTACTACACACGTGACCA-AAACTTTCCGGTACACATAGC
*
27149275 AGCCTACACTTAGTACTACACACGTG
1 AGCCTACACATAGTACTACACACGTG
27149301 TTTATAGGCA
Statistics
Matches: 104, Mismatches: 20, Indels: 7
0.79 0.15 0.05
Matches are distributed among these distances:
50 27 0.26
51 73 0.70
52 4 0.04
ACGTcount: A:0.31, C:0.29, G:0.16, T:0.24
Consensus pattern (51 bp):
AGCCTACACATAGTACTACACACGTGACCAAAACTTTCCGGTACACATAGC
Found at i:27150906 original size:27 final size:27
Alignment explanation
Indices: 27150869--27150922 Score: 74
Period size: 28 Copynumber: 2.0 Consensus size: 27
27150859 AATATTTACC
*
27150869 CCTTAAATTCT-TTTTAACAGAATCAA
1 CCTTAAATTCTGTTATAACAGAATCAA
*
27150895 CCTTAAAATTCTGTTATAACATAATCAA
1 CCTT-AAATTCTGTTATAACAGAATCAA
27150923 TTGAAGATAT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 4 0.17
27 7 0.29
28 13 0.54
ACGTcount: A:0.41, C:0.19, G:0.04, T:0.37
Consensus pattern (27 bp):
CCTTAAATTCTGTTATAACAGAATCAA
Found at i:27158354 original size:9 final size:8
Alignment explanation
Indices: 27158341--27158365 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
27158331 AACAAAAATT
27158341 TAAAAAAA
1 TAAAAAAA
27158349 TAAAAAAA
1 TAAAAAAA
27158357 TAAAAAAA
1 TAAAAAAA
27158365 T
1 T
27158366 TGAAAAATTC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.84, C:0.00, G:0.00, T:0.16
Consensus pattern (8 bp):
TAAAAAAA
Found at i:27161807 original size:16 final size:16
Alignment explanation
Indices: 27161786--27161819 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
27161776 AGATAGATTA
27161786 TTTCCACCATTATTTC
1 TTTCCACCATTATTTC
* *
27161802 TTTCCACCTTTCTTTC
1 TTTCCACCATTATTTC
27161818 TT
1 TT
27161820 CTTCCCCTTT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.12, C:0.32, G:0.00, T:0.56
Consensus pattern (16 bp):
TTTCCACCATTATTTC
Found at i:27165818 original size:15 final size:15
Alignment explanation
Indices: 27165787--27165824 Score: 58
Period size: 15 Copynumber: 2.5 Consensus size: 15
27165777 AATTAGTAAC
27165787 TTAAAATTAAATAAAA
1 TTAAAA-TAAATAAAA
*
27165803 TTAAAATAACTAAAA
1 TTAAAATAAATAAAA
27165818 TTAAAAT
1 TTAAAAT
27165825 TCGTATCTAT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
15 15 0.71
16 6 0.29
ACGTcount: A:0.66, C:0.03, G:0.00, T:0.32
Consensus pattern (15 bp):
TTAAAATAAATAAAA
Found at i:27171076 original size:27 final size:26
Alignment explanation
Indices: 27170988--27171068 Score: 94
Period size: 27 Copynumber: 3.0 Consensus size: 26
27170978 CACGATATAT
*
27170988 AAAGAAAGCTTTTGTGACATAAT-AT-A
1 AAAGAAAGC-TTTGTGGCA-AATAATGA
27171014 AAAGAAAGCCTTTGTGGCAAATAATGA
1 AAAGAAAG-CTTTGTGGCAAATAATGA
*
27171041 AAAGAAAGCTTATGTGGCAAATCATGA
1 AAAGAAAGCTT-TGTGGCAAATAATGA
27171068 A
1 A
27171069 CTAAAAGCAA
Statistics
Matches: 49, Mismatches: 2, Indels: 7
0.84 0.03 0.12
Matches are distributed among these distances:
25 3 0.06
26 21 0.43
27 25 0.51
ACGTcount: A:0.46, C:0.10, G:0.20, T:0.25
Consensus pattern (26 bp):
AAAGAAAGCTTTGTGGCAAATAATGA
Found at i:27182169 original size:8 final size:9
Alignment explanation
Indices: 27182142--27182166 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
27182132 CAAGCTTGTT
27182142 TTATTTTTA
1 TTATTTTTA
27182151 TTATTTTTA
1 TTATTTTTA
27182160 TTATTTT
1 TTATTTT
27182167 ATTTTTACAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (9 bp):
TTATTTTTA
Found at i:27184446 original size:17 final size:17
Alignment explanation
Indices: 27184424--27184456 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
27184414 GTTAGTGCAC
*
27184424 ATTGTCATTGCATTTTT
1 ATTGTCATCGCATTTTT
27184441 ATTGTCATCGCATTTT
1 ATTGTCATCGCATTTT
27184457 AATCTTAGTG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.18, C:0.15, G:0.12, T:0.55
Consensus pattern (17 bp):
ATTGTCATCGCATTTTT
Found at i:27186206 original size:13 final size:13
Alignment explanation
Indices: 27186185--27186217 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
27186175 CGTGTTGTGG
27186185 TTGTATTTACTTA
1 TTGTATTTACTTA
*
27186198 TTGTGTTTACTTA
1 TTGTATTTACTTA
27186211 TT-TATTT
1 TTGTATTT
27186218 TAGTTTGAGA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
12 4 0.22
13 14 0.78
ACGTcount: A:0.18, C:0.06, G:0.09, T:0.67
Consensus pattern (13 bp):
TTGTATTTACTTA
Found at i:27213704 original size:15 final size:15
Alignment explanation
Indices: 27213686--27213715 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
27213676 TAGGTAGAAA
27213686 TTAAATTAAACAAAT
1 TTAAATTAAACAAAT
*
27213701 TTAAATTAAGCAAAT
1 TTAAATTAAACAAAT
27213716 GGAATTAATT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.57, C:0.07, G:0.03, T:0.33
Consensus pattern (15 bp):
TTAAATTAAACAAAT
Found at i:27214947 original size:42 final size:43
Alignment explanation
Indices: 27214900--27214985 Score: 138
Period size: 42 Copynumber: 2.0 Consensus size: 43
27214890 AGGGTAAATC
* * *
27214900 CAACAACCCATGTTTATCTTCTCTTC-TTTTAAATTCTTTTTT
1 CAACAACCCAAGATTATCTTCTCCTCTTTTTAAATTCTTTTTT
27214942 CAACAACCCAAGATTATCTTCTCCTCTTTTTAAATTCTTTTTT
1 CAACAACCCAAGATTATCTTCTCCTCTTTTTAAATTCTTTTTT
27214985 C
1 C
27214986 TAGGATAAAA
Statistics
Matches: 40, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
42 23 0.57
43 17 0.43
ACGTcount: A:0.23, C:0.26, G:0.02, T:0.49
Consensus pattern (43 bp):
CAACAACCCAAGATTATCTTCTCCTCTTTTTAAATTCTTTTTT
Found at i:27223281 original size:19 final size:19
Alignment explanation
Indices: 27223259--27223304 Score: 74
Period size: 19 Copynumber: 2.4 Consensus size: 19
27223249 TGTCAACTAT
* *
27223259 ACTTGCATCGACAGTGTAC
1 ACTTGCACCAACAGTGTAC
27223278 ACTTGCACCAACAGTGTAC
1 ACTTGCACCAACAGTGTAC
27223297 ACTTGCAC
1 ACTTGCAC
27223305 ATTATTGCTG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
19 25 1.00
ACGTcount: A:0.28, C:0.30, G:0.17, T:0.24
Consensus pattern (19 bp):
ACTTGCACCAACAGTGTAC
Found at i:27230491 original size:14 final size:14
Alignment explanation
Indices: 27230472--27230499 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
27230462 AGAATTGTTT
27230472 GCTGTAGTATTTGC
1 GCTGTAGTATTTGC
27230486 GCTGTAGTATTTGC
1 GCTGTAGTATTTGC
27230500 TTTTGAAAAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.14, C:0.14, G:0.29, T:0.43
Consensus pattern (14 bp):
GCTGTAGTATTTGC
Found at i:27233246 original size:21 final size:20
Alignment explanation
Indices: 27233221--27233277 Score: 53
Period size: 21 Copynumber: 2.8 Consensus size: 20
27233211 GTGCCCCTAT
27233221 TTGTACTTCGGTACCCCTGAA
1 TTGTACTTCGGTACCCCTG-A
* * *
27233242 TTGTACATAC-GTGCCCCTGT
1 TTGTAC-TTCGGTACCCCTGA
*
27233262 TTATACTTCGGTACCC
1 TTGTACTTCGGTACCC
27233278 TTAAATTGCA
Statistics
Matches: 28, Mismatches: 6, Indels: 5
0.72 0.15 0.13
Matches are distributed among these distances:
19 2 0.07
20 10 0.36
21 14 0.50
22 2 0.07
ACGTcount: A:0.18, C:0.30, G:0.18, T:0.35
Consensus pattern (20 bp):
TTGTACTTCGGTACCCCTGA
Found at i:27233256 original size:41 final size:41
Alignment explanation
Indices: 27233194--27233341 Score: 206
Period size: 41 Copynumber: 3.6 Consensus size: 41
27233184 GTTAATTATT
27233194 CCCTAAATTGCACATACGTGCCCCTATTTGTACTTCGGTAC
1 CCCTAAATTGCACATACGTGCCCCTATTTGTACTTCGGTAC
* * * *
27233235 CCCTGAATTGTACATACGTGCCCCTGTTTATACTTCGGTAC
1 CCCTAAATTGCACATACGTGCCCCTATTTGTACTTCGGTAC
* * **
27233276 CCTTAAATTGCACATATGTGCCCCTATTTGTACTTTAGTAC
1 CCCTAAATTGCACATACGTGCCCCTATTTGTACTTCGGTAC
* *
27233317 CCATGAATTGCACATACGTGCCCCT
1 CCCTAAATTGCACATACGTGCCCCT
27233342 GTTTACACTC
Statistics
Matches: 92, Mismatches: 15, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
41 92 1.00
ACGTcount: A:0.22, C:0.30, G:0.15, T:0.33
Consensus pattern (41 bp):
CCCTAAATTGCACATACGTGCCCCTATTTGTACTTCGGTAC
Found at i:27237156 original size:4 final size:4
Alignment explanation
Indices: 27237147--27237233 Score: 165
Period size: 4 Copynumber: 21.8 Consensus size: 4
27237137 AGGTGCCGTT
27237147 ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG
1 ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG
*
27237195 ATAA ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATA
1 ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATA
27237234 ACCACAAATG
Statistics
Matches: 81, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
4 81 1.00
ACGTcount: A:0.52, C:0.00, G:0.23, T:0.25
Consensus pattern (4 bp):
ATAG
Found at i:27237822 original size:16 final size:15
Alignment explanation
Indices: 27237794--27237837 Score: 61
Period size: 16 Copynumber: 2.8 Consensus size: 15
27237784 ACCTATGCAT
*
27237794 AGACTCATCATGTAG
1 AGACTCATCATGTAA
27237809 AGACTCATTCATGTAA
1 AGACTCA-TCATGTAA
27237825 AGACTCCATCATG
1 AGACT-CATCATG
27237838 CTTTTAAGTG
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
15 7 0.27
16 17 0.65
17 2 0.08
ACGTcount: A:0.34, C:0.23, G:0.16, T:0.27
Consensus pattern (15 bp):
AGACTCATCATGTAA
Found at i:27241005 original size:21 final size:21
Alignment explanation
Indices: 27240981--27241021 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
27240971 TCATAAGCCA
27240981 ATTTCATCATCAAAT-GCATAT
1 ATTTCAT-ATCAAATGGCATAT
*
27241002 ATTTCATATCATATGGCATA
1 ATTTCATATCAAATGGCATA
27241022 CCGCATTTCA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 6 0.33
21 12 0.67
ACGTcount: A:0.37, C:0.17, G:0.07, T:0.39
Consensus pattern (21 bp):
ATTTCATATCAAATGGCATAT
Done.