Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr08 ID=Chr08-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 57128820
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 677448 characters in sequence are not A, C, G, or T
File 92 of 190
Found at i:27242870 original size:6 final size:6
Alignment explanation
Indices: 27242851--27242883 Score: 50
Period size: 6 Copynumber: 5.7 Consensus size: 6
27242841 AGGACTTAAG
*
27242851 TCTGTA TCTCTA TCTGTA TCTGTA TCTGT- TCTG
1 TCTGTA TCTGTA TCTGTA TCTGTA TCTGTA TCTG
27242884 CATATGAGTT
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
5 4 0.16
6 21 0.84
ACGTcount: A:0.12, C:0.21, G:0.15, T:0.52
Consensus pattern (6 bp):
TCTGTA
Found at i:27254493 original size:66 final size:66
Alignment explanation
Indices: 27254387--27254510 Score: 180
Period size: 66 Copynumber: 1.9 Consensus size: 66
27254377 TTTCTGCACT
* *
27254387 AATGTCGCTACATGAGTTAATTCCAGATTGTGTCATGAATTGTCGCTATAGTTGACAGATATTCG
1 AATGTCGCTACATGAGTTAATTCCAGATGGTGTCATGAATTGTCGCCATAGTTGACAGATATTCG
27254452 C
66 C
* *
27254453 AATGTCGCTGCATGAGTTAATTCCAGATGGCAT-TCA-GAATTTTCGCCATAGTTGACAG
1 AATGTCGCTACATGAGTTAATTCCAGATGG--TGTCATGAATTGTCGCCATAGTTGACAG
27254511 TTGTCAAATA
Statistics
Matches: 52, Mismatches: 4, Indels: 4
0.87 0.07 0.07
Matches are distributed among these distances:
66 48 0.92
67 3 0.06
68 1 0.02
ACGTcount: A:0.27, C:0.18, G:0.22, T:0.33
Consensus pattern (66 bp):
AATGTCGCTACATGAGTTAATTCCAGATGGTGTCATGAATTGTCGCCATAGTTGACAGATATTCG
C
Found at i:27263735 original size:2 final size:2
Alignment explanation
Indices: 27263728--27263756 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
27263718 TGTCCGAATT
27263728 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
27263757 CAACGTTTTC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:27273510 original size:16 final size:17
Alignment explanation
Indices: 27273474--27273512 Score: 62
Period size: 17 Copynumber: 2.4 Consensus size: 17
27273464 TTGAACCATG
*
27273474 TTTTATATTTTTTAATA
1 TTTTATATTTTTAAATA
27273491 TTTTATATTTTTAAAT-
1 TTTTATATTTTTAAATA
27273507 TTTTAT
1 TTTTAT
27273513 GAATTATTTA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
16 6 0.29
17 15 0.71
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (17 bp):
TTTTATATTTTTAAATA
Found at i:27278258 original size:19 final size:20
Alignment explanation
Indices: 27278234--27278278 Score: 56
Period size: 20 Copynumber: 2.3 Consensus size: 20
27278224 CCAAATTTTT
* *
27278234 ATTTTAA-GTTATTTTGTAC
1 ATTTTAATGTTATTATGCAC
*
27278253 ATTTTAATTTTATTATGCAC
1 ATTTTAATGTTATTATGCAC
27278273 ATTTTA
1 ATTTTA
27278279 TTAACTTCAT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
19 7 0.32
20 15 0.68
ACGTcount: A:0.29, C:0.07, G:0.07, T:0.58
Consensus pattern (20 bp):
ATTTTAATGTTATTATGCAC
Found at i:27282972 original size:30 final size:30
Alignment explanation
Indices: 27282938--27282997 Score: 111
Period size: 30 Copynumber: 2.0 Consensus size: 30
27282928 CATTACATAG
*
27282938 CTATTATCAAATTGATGTCAAACGGTGTAT
1 CTATTATCAAATTGATGTCAAACAGTGTAT
27282968 CTATTATCAAATTGATGTCAAACAGTGTAT
1 CTATTATCAAATTGATGTCAAACAGTGTAT
27282998 GAGCATGGGA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.35, C:0.13, G:0.15, T:0.37
Consensus pattern (30 bp):
CTATTATCAAATTGATGTCAAACAGTGTAT
Found at i:27283280 original size:23 final size:22
Alignment explanation
Indices: 27283254--27283297 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
27283244 ATTTTACCAA
*
27283254 TAAAAATGTAGACAAGTTGCCAG
1 TAAAAACG-AGACAAGTTGCCAG
*
27283277 TAAAAACGAGATAAGTTGCCA
1 TAAAAACGAGACAAGTTGCCA
27283298 TTCCCCTCGG
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 12 0.63
23 7 0.37
ACGTcount: A:0.45, C:0.14, G:0.20, T:0.20
Consensus pattern (22 bp):
TAAAAACGAGACAAGTTGCCAG
Found at i:27285412 original size:20 final size:19
Alignment explanation
Indices: 27285386--27285436 Score: 75
Period size: 20 Copynumber: 2.6 Consensus size: 19
27285376 TTGGAGTAGG
*
27285386 AATATCGATACCTTAGGAA
1 AATATCGATACCTTAAGAA
27285405 ATATATCGATACCTTAAGAA
1 A-ATATCGATACCTTAAGAA
27285425 AAGTATCGATAC
1 AA-TATCGATAC
27285437 TAGATCAATA
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
19 2 0.07
20 27 0.93
ACGTcount: A:0.43, C:0.16, G:0.14, T:0.27
Consensus pattern (19 bp):
AATATCGATACCTTAAGAA
Found at i:27292327 original size:3 final size:3
Alignment explanation
Indices: 27292319--27292398 Score: 151
Period size: 3 Copynumber: 26.7 Consensus size: 3
27292309 AGGATCCTAA
*
27292319 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAA AAG AAG AAG AAG AAG
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
27292367 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AA
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AA
27292399 AGTGAGGATC
Statistics
Matches: 75, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
3 75 1.00
ACGTcount: A:0.69, C:0.00, G:0.31, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:27296460 original size:37 final size:37
Alignment explanation
Indices: 27296417--27296491 Score: 123
Period size: 37 Copynumber: 2.0 Consensus size: 37
27296407 ATGAAATGCT
* *
27296417 TAAGTCATATGCTTTGAAATCAATGCTTGTAGCATAC
1 TAAGTCATATACTCTGAAATCAATGCTTGTAGCATAC
*
27296454 TAAGTCATATACTCTGAAATCAGTGCTTGTAGCATAC
1 TAAGTCATATACTCTGAAATCAATGCTTGTAGCATAC
27296491 T
1 T
27296492 TTATCAATGG
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 35 1.00
ACGTcount: A:0.32, C:0.17, G:0.16, T:0.35
Consensus pattern (37 bp):
TAAGTCATATACTCTGAAATCAATGCTTGTAGCATAC
Found at i:27302261 original size:20 final size:20
Alignment explanation
Indices: 27302214--27302265 Score: 59
Period size: 20 Copynumber: 2.6 Consensus size: 20
27302204 GACAATCATT
* *
27302214 TTAAAATGATTTTGACTTGA
1 TTAAAATCATTTTGACATGA
** *
27302234 TTGGAATCATTTTGACATGG
1 TTAAAATCATTTTGACATGA
27302254 TTAAAATCATTT
1 TTAAAATCATTT
27302266 GCTCTTGATT
Statistics
Matches: 25, Mismatches: 7, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.33, C:0.08, G:0.15, T:0.44
Consensus pattern (20 bp):
TTAAAATCATTTTGACATGA
Found at i:27302513 original size:30 final size:29
Alignment explanation
Indices: 27302477--27302547 Score: 81
Period size: 30 Copynumber: 2.4 Consensus size: 29
27302467 TCCTCTTGAC
* *
27302477 TTAGATAGCCACAGAGGTG-TCTACACATCA
1 TTAGATAGCCACA-AGG-GATCCAAACATCA
*
27302507 TTAGATAGCCATAAGGGCATCCAAACATCA
1 TTAGATAGCCACAAGGG-ATCCAAACATCA
27302537 TTAGATAGCCA
1 TTAGATAGCCA
27302548 TAAAGGCGTC
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
28 1 0.03
29 3 0.08
30 32 0.89
ACGTcount: A:0.37, C:0.23, G:0.18, T:0.23
Consensus pattern (29 bp):
TTAGATAGCCACAAGGGATCCAAACATCA
Found at i:27302548 original size:30 final size:30
Alignment explanation
Indices: 27302501--27302559 Score: 100
Period size: 30 Copynumber: 2.0 Consensus size: 30
27302491 AGGTGTCTAC
*
27302501 ACATCATTAGATAGCCATAAGGGCATCCAA
1 ACATCATTAGATAGCCATAAAGGCATCCAA
*
27302531 ACATCATTAGATAGCCATAAAGGCGTCCA
1 ACATCATTAGATAGCCATAAAGGCATCCA
27302560 TACACATACT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.39, C:0.24, G:0.17, T:0.20
Consensus pattern (30 bp):
ACATCATTAGATAGCCATAAAGGCATCCAA
Found at i:27303560 original size:32 final size:32
Alignment explanation
Indices: 27303523--27303646 Score: 248
Period size: 32 Copynumber: 3.9 Consensus size: 32
27303513 ATTACTACTA
27303523 TCCAAAAACTGTTCCATTCCAAATTTTTGCTG
1 TCCAAAAACTGTTCCATTCCAAATTTTTGCTG
27303555 TCCAAAAACTGTTCCATTCCAAATTTTTGCTG
1 TCCAAAAACTGTTCCATTCCAAATTTTTGCTG
27303587 TCCAAAAACTGTTCCATTCCAAATTTTTGCTG
1 TCCAAAAACTGTTCCATTCCAAATTTTTGCTG
27303619 TCCAAAAACTGTTCCATTCCAAATTTTT
1 TCCAAAAACTGTTCCATTCCAAATTTTT
27303647 ACTCTTTTAT
Statistics
Matches: 92, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 92 1.00
ACGTcount: A:0.29, C:0.25, G:0.08, T:0.38
Consensus pattern (32 bp):
TCCAAAAACTGTTCCATTCCAAATTTTTGCTG
Found at i:27304038 original size:20 final size:20
Alignment explanation
Indices: 27304013--27304051 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 20
27304003 TACTTTCTTC
27304013 TTTACTTACTCT-CTTACTTG
1 TTTACTTACT-TGCTTACTTG
27304033 TTTACTTACTTGCTTACTT
1 TTTACTTACTTGCTTACTT
27304052 AAATAACTCA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 1 0.06
20 17 0.94
ACGTcount: A:0.15, C:0.23, G:0.05, T:0.56
Consensus pattern (20 bp):
TTTACTTACTTGCTTACTTG
Found at i:27305682 original size:50 final size:50
Alignment explanation
Indices: 27305618--27305847 Score: 325
Period size: 50 Copynumber: 4.6 Consensus size: 50
27305608 GAGCCAATGT
* * * * * *
27305618 CATGTCCCAGACATGGTCTTACACAGACTCTTCTCTGTCTGTGCCGATGG
1 CATGTCCCAGACATGGTCTTACACTGGCACTCCTCGGTCTGTGCCGATGC
* *
27305668 CATGTCCTAAACATGGTCTTACACTGGCACTCCTCGGTCTGTGCCGATGC
1 CATGTCCCAGACATGGTCTTACACTGGCACTCCTCGGTCTGTGCCGATGC
*
27305718 CATGTCCCAGACATGGTCTTACACTGGCACTCCTCAGTCTGTGCCGATGC
1 CATGTCCCAGACATGGTCTTACACTGGCACTCCTCGGTCTGTGCCGATGC
* * * **
27305768 CATGTCCTAGACATGGTCTTACATTGGCACTTCTCGGTCTGTGTTGATGC
1 CATGTCCCAGACATGGTCTTACACTGGCACTCCTCGGTCTGTGCCGATGC
*
27305818 CATGTCCCAGACATGGTCTTACACTAGCAC
1 CATGTCCCAGACATGGTCTTACACTGGCAC
27305848 ACTTACTGCC
Statistics
Matches: 160, Mismatches: 20, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
50 160 1.00
ACGTcount: A:0.19, C:0.30, G:0.22, T:0.29
Consensus pattern (50 bp):
CATGTCCCAGACATGGTCTTACACTGGCACTCCTCGGTCTGTGCCGATGC
Found at i:27305835 original size:150 final size:147
Alignment explanation
Indices: 27305562--27305847 Score: 349
Period size: 150 Copynumber: 1.9 Consensus size: 147
27305552 CTTGGTAGGA
* * *
27305562 TGCCAATGCCATATCCCAGATATGGTCTTACATGGGATCATATCTCGAGCCAATGTCATGTCCCA
1 TGCCAATGCCATATCCCAGACATGGTCTTACATGGCATCATATCTCGAGCCAATGCCATGTCCCA
* * * *
27305627 GACATGGTCTTACACAGACTCTTCTCTGTCTGTGCCGATGGCATGTCCTAAACATGGTCTTACAC
66 GACATGGTCTTACACAGACACTTCTCGGTCTGTGCCGATGCCATGTCCCAAACATGGTCTTACAC
*
27305692 TGGCACTCCTCGGTCTG
131 TAGCACTCCTCGGTCTG
* * * * *
27305709 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCACTCCTCAGTCT-GTGCCGATGCCATGT
1 TGCCAATGCCATATCCCAGACATGGTCTTACA-TGGCA-TCAT-A-TCTCGAGCCAATGCCATGT
* ** * ** *
27305773 CCTAGACATGGTCTTACATTGGCACTTCTCGGTCTGTGTTGATGCCATGTCCCAGACATGGTCTT
62 CCCAGACATGGTCTTACACAGACACTTCTCGGTCTGTGCCGATGCCATGTCCCAAACATGGTCTT
27305838 ACACTAGCAC
127 ACACTAGCAC
27305848 ACTTACTGCC
Statistics
Matches: 115, Mismatches: 20, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
147 29 0.25
148 4 0.03
149 3 0.03
150 76 0.66
151 3 0.03
ACGTcount: A:0.20, C:0.29, G:0.21, T:0.29
Consensus pattern (147 bp):
TGCCAATGCCATATCCCAGACATGGTCTTACATGGCATCATATCTCGAGCCAATGCCATGTCCCA
GACATGGTCTTACACAGACACTTCTCGGTCTGTGCCGATGCCATGTCCCAAACATGGTCTTACAC
TAGCACTCCTCGGTCTG
Found at i:27305928 original size:44 final size:44
Alignment explanation
Indices: 27305875--27305962 Score: 149
Period size: 44 Copynumber: 2.0 Consensus size: 44
27305865 AACCATGGTA
* * *
27305875 TTTTTCGTCAATTTTTTCTTAATTGCCATGTTATAAACATGGAC
1 TTTTCCGTCAATTCTTCCTTAATTGCCATGTTATAAACATGGAC
27305919 TTTTCCGTCAATTCTTCCTTAATTGCCATGTTATAAACATGGAC
1 TTTTCCGTCAATTCTTCCTTAATTGCCATGTTATAAACATGGAC
27305963 CTTGAGATAT
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
44 41 1.00
ACGTcount: A:0.25, C:0.19, G:0.11, T:0.44
Consensus pattern (44 bp):
TTTTCCGTCAATTCTTCCTTAATTGCCATGTTATAAACATGGAC
Found at i:27307642 original size:56 final size:52
Alignment explanation
Indices: 27307512--27307649 Score: 163
Period size: 50 Copynumber: 2.6 Consensus size: 52
27307502 TCTCATATCG
* * *
27307512 ATGCCCATGCCATGTCCTAGACATGGTCTTACGGGGGACCTCTCATCTCAGT
1 ATGCCAATGCCATGTCCCAGACATGGTCTTACGGGGGACCTCTCATCTCAAT
* *
27307564 A--CCAACGCCATGTCCCAGACATGGTCTTACGTGGGACCTCTCATAACCTCAAT
1 ATGCCAATGCCATGTCCCAGACATGGTCTTACGGGGGACCTCTCAT---CTCAAT
* *
27307617 AATGCCAATGCCATGTCCCAAACATGGTGTTAC
1 -ATGCCAATGCCATGTCCCAGACATGGTCTTAC
27307650 ATGATGTCTC
Statistics
Matches: 72, Mismatches: 8, Indels: 8
0.82 0.09 0.09
Matches are distributed among these distances:
50 39 0.54
52 1 0.01
53 5 0.07
54 1 0.01
56 26 0.36
ACGTcount: A:0.25, C:0.31, G:0.20, T:0.25
Consensus pattern (52 bp):
ATGCCAATGCCATGTCCCAGACATGGTCTTACGGGGGACCTCTCATCTCAAT
Found at i:27308744 original size:50 final size:50
Alignment explanation
Indices: 27308673--27308802 Score: 143
Period size: 50 Copynumber: 2.6 Consensus size: 50
27308663 CTGTACTGCA
* * * ** * *
27308673 AATGTCATATCCCAGATATGGTCTTACATGAGAGTTCTCATATCGGTGCC
1 AATGACATGTCCCAGACATGGTCTTACATGAGACCTCTCATATCAGTACC
* * *** *
27308723 CATGCCATGTCCCAGACATGGTCTTATGGGAGACCTCTCATCTCAGTACC
1 AATGACATGTCCCAGACATGGTCTTACATGAGACCTCTCATATCAGTACC
27308773 AATGACATGTCCCAGACATGGTCTTACATG
1 AATGACATGTCCCAGACATGGTCTTACATG
27308803 GGGTCTCATC
Statistics
Matches: 63, Mismatches: 17, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
50 63 1.00
ACGTcount: A:0.25, C:0.26, G:0.20, T:0.28
Consensus pattern (50 bp):
AATGACATGTCCCAGACATGGTCTTACATGAGACCTCTCATATCAGTACC
Found at i:27311988 original size:49 final size:49
Alignment explanation
Indices: 27311931--27312028 Score: 187
Period size: 49 Copynumber: 2.0 Consensus size: 49
27311921 CTAATCCAAG
*
27311931 AAAACTTCTAACCTCTGACACATTTCTGGGTGGTTTCCACTCAACAATT
1 AAAACTTCTAACCTCTCACACATTTCTGGGTGGTTTCCACTCAACAATT
27311980 AAAACTTCTAACCTCTCACACATTTCTGGGTGGTTTCCACTCAACAATT
1 AAAACTTCTAACCTCTCACACATTTCTGGGTGGTTTCCACTCAACAATT
27312029 GCTAAAATTT
Statistics
Matches: 48, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
49 48 1.00
ACGTcount: A:0.29, C:0.28, G:0.11, T:0.33
Consensus pattern (49 bp):
AAAACTTCTAACCTCTCACACATTTCTGGGTGGTTTCCACTCAACAATT
Found at i:27320346 original size:20 final size:18
Alignment explanation
Indices: 27320321--27320357 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 18
27320311 CTACCTAATA
27320321 AAAGAAGGAGAGAGAAGAAG
1 AAAGAA-GA-AGAGAAGAAG
27320341 AAAGAAGAAGAGAAGAA
1 AAAGAAGAAGAGAAGAA
27320358 TTTGTGTGAG
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 9 0.53
19 2 0.12
20 6 0.35
ACGTcount: A:0.65, C:0.00, G:0.35, T:0.00
Consensus pattern (18 bp):
AAAGAAGAAGAGAAGAAG
Found at i:27328381 original size:27 final size:27
Alignment explanation
Indices: 27328324--27328385 Score: 72
Period size: 27 Copynumber: 2.3 Consensus size: 27
27328314 TTAAGAGTGT
* *
27328324 GCCACGAAGGCATTCCTTACAAAGTTT
1 GCCACAAAGGCATTCCTTACAAAGTTC
* *
27328351 GCCACAAAGGCATTCCTTCCATA-TTAC
1 GCCACAAAGGCATTCCTTACAAAGTT-C
27328378 GCCACAAA
1 GCCACAAA
27328386 CGTTTTCTTT
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
26 2 0.07
27 28 0.93
ACGTcount: A:0.32, C:0.31, G:0.15, T:0.23
Consensus pattern (27 bp):
GCCACAAAGGCATTCCTTACAAAGTTC
Found at i:27333459 original size:41 final size:43
Alignment explanation
Indices: 27333401--27333482 Score: 116
Period size: 41 Copynumber: 2.0 Consensus size: 43
27333391 ATTTCCATGT
* *
27333401 CATTTTCATTTTTCATTTTTG-AGAAAACGACA-TTCATTTCTC
1 CATTCTCATTTTTCA-TTTTGCAGAAAACCACATTTCATTTCTC
27333443 CATTCTCA-TTTTCATTTTGCAGAAAACCACATTTCATTTC
1 CATTCTCATTTTTCATTTTGCAGAAAACCACATTTCATTTC
27333483 CAAATGTTTC
Statistics
Matches: 36, Mismatches: 2, Indels: 4
0.86 0.05 0.10
Matches are distributed among these distances:
40 5 0.14
41 16 0.44
42 15 0.42
ACGTcount: A:0.27, C:0.22, G:0.06, T:0.45
Consensus pattern (43 bp):
CATTCTCATTTTTCATTTTGCAGAAAACCACATTTCATTTCTC
Found at i:27337838 original size:42 final size:42
Alignment explanation
Indices: 27337757--27337883 Score: 148
Period size: 43 Copynumber: 3.0 Consensus size: 42
27337747 TTCCAATATT
* * * ** *
27337757 GATTTGAGATCCCGTATAATACCATATATGGGATA-TGGCATC
1 GATTTGAGAT-TCGTGTAAGACCATAGCTGGGCTATTGGCATC
*
27337799 GATTTGAGATTCGTGTAAGACCATAGCTGGGCTATTGGCATT
1 GATTTGAGATTCGTGTAAGACCATAGCTGGGCTATTGGCATC
* *
27337841 GATTTAAGATTTTGTGTAAGACCATAGCTGGGCTATTGGCATC
1 GATTTGAGA-TTCGTGTAAGACCATAGCTGGGCTATTGGCATC
27337884 AATACGAGAT
Statistics
Matches: 73, Mismatches: 10, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
41 18 0.25
42 24 0.33
43 31 0.42
ACGTcount: A:0.27, C:0.15, G:0.25, T:0.33
Consensus pattern (42 bp):
GATTTGAGATTCGTGTAAGACCATAGCTGGGCTATTGGCATC
Found at i:27337894 original size:43 final size:44
Alignment explanation
Indices: 27337810--27337909 Score: 130
Period size: 43 Copynumber: 2.3 Consensus size: 44
27337800 ATTTGAGATT
** **
27337810 CGTGTAAGACCATAGCTGGGCTATTGGCATTGATTTAAGATTT-
1 CGTGTAAGACCATAGCTGGGCTATTGGCATCAATACAAGATTTC
* *
27337853 TGTGTAAGACCATAGCTGGGCTATTGGCATCAATACGAGATTTC
1 CGTGTAAGACCATAGCTGGGCTATTGGCATCAATACAAGATTTC
*
27337897 CATGTAAGACCAT
1 CGTGTAAGACCAT
27337910 GTCTGGGACA
Statistics
Matches: 48, Mismatches: 8, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
43 37 0.77
44 11 0.23
ACGTcount: A:0.28, C:0.17, G:0.24, T:0.31
Consensus pattern (44 bp):
CGTGTAAGACCATAGCTGGGCTATTGGCATCAATACAAGATTTC
Found at i:27341287 original size:18 final size:17
Alignment explanation
Indices: 27341262--27341295 Score: 59
Period size: 18 Copynumber: 1.9 Consensus size: 17
27341252 TATATATTAT
27341262 TTAATAAATTAATTTAA
1 TTAATAAATTAATTTAA
27341279 TTAACTAAATTAATTTA
1 TTAA-TAAATTAATTTA
27341296 TCAATTAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 4 0.25
18 12 0.75
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (17 bp):
TTAATAAATTAATTTAA
Found at i:27343063 original size:10 final size:10
Alignment explanation
Indices: 27343048--27343089 Score: 61
Period size: 10 Copynumber: 4.3 Consensus size: 10
27343038 AACTTCAATT
27343048 ATTTCTATTC
1 ATTTCTATTC
27343058 ATTTCTA-TC
1 ATTTCTATTC
27343067 ATTTGC-ATTC
1 ATTT-CTATTC
27343077 ATTTCTATTC
1 ATTTCTATTC
27343087 ATT
1 ATT
27343090 GGTTCTACAT
Statistics
Matches: 29, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
9 8 0.28
10 21 0.72
ACGTcount: A:0.21, C:0.19, G:0.02, T:0.57
Consensus pattern (10 bp):
ATTTCTATTC
Found at i:27353716 original size:42 final size:42
Alignment explanation
Indices: 27353649--27353746 Score: 153
Period size: 42 Copynumber: 2.4 Consensus size: 42
27353639 TACTTAGTGA
* * *
27353649 GTTACACAGC-TAGGACACGACCGTGTGTCCCTTGTTTGAAT
1 GTTACACAGCTTGGGACACAACCGTGTGTCCCTTGTTCGAAT
*
27353690 GTTACACAGGTTGGGACACAACCGTGTGTCCCTTGTTCGAAT
1 GTTACACAGCTTGGGACACAACCGTGTGTCCCTTGTTCGAAT
27353732 GTTACACAGCTTGGG
1 GTTACACAGCTTGGG
27353747 GAGATATTAC
Statistics
Matches: 51, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
41 9 0.18
42 42 0.82
ACGTcount: A:0.21, C:0.23, G:0.27, T:0.29
Consensus pattern (42 bp):
GTTACACAGCTTGGGACACAACCGTGTGTCCCTTGTTCGAAT
Found at i:27353843 original size:21 final size:21
Alignment explanation
Indices: 27353817--27353856 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
27353807 TTTTCTTAAA
*
27353817 AGTTCTCATTTGCTTCAAATT
1 AGTTCTCAATTGCTTCAAATT
*
27353838 AGTTCTGAATTGCTTCAAA
1 AGTTCTCAATTGCTTCAAA
27353857 GTTATTTTTA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.28, C:0.17, G:0.12, T:0.42
Consensus pattern (21 bp):
AGTTCTCAATTGCTTCAAATT
Found at i:27366383 original size:558 final size:558
Alignment explanation
Indices: 27365329--27366449 Score: 2039
Period size: 558 Copynumber: 2.0 Consensus size: 558
27365319 CCCAAAAAAT
*
27365329 AGAGACATAGATGTGACTGACTAGACTAGCAATACATTGGACTGGACCTAAGAAGAATAGATCAT
1 AGAGACATAGATGTGACTGACTAGACTAGCAATACATTGGACTGGACCTAAGAAAAATAGATCAT
*
27365394 GAATCCATTTATGTATTTATTCACTTGTGATGTTCATAGTGTGGTATACCTAAATCCTGAGTGGA
66 GAATCCATTTATGTATTTATTCACTTGTGATGTTCATAGTGTGGCATACCTAAATCCTGAGTGGA
27365459 TGACGGGCTATGTATGCATGACTCGTACACTTTTATGTAAGTAAAAGCTTAAGTTTGAATAGATA
131 TGACGGGCTATGTATGCATGACTCGTACACTTTTATGTAAGTAAAAGCTTAAGTTTGAATAGATA
*
27365524 AGGAACCTAAAGCTGGTGTGTTGGATGTACAACTTCTACAATATGTAGCTTAATTTACAATAATG
196 AGGAACCGAAAGCTGGTGTGTTGGATGTACAACTTCTACAATATGTAGCTTAATTTACAATAATG
27365589 GAATTCATAGCCCAAGACATGGGTAAATAATATCCTCTCATTTACATTACACAGTTGATGAAAAG
261 GAATTCATAGCCCAAGACATGGGTAAATAATATCCTCTCATTTACATTACACAGTTGATGAAAAG
*
27365654 TAAACGTGGTCACAGGTTGTTTGTCTTTGTGATGAATGACTTGATTACTATTGGTTAGTAACTGA
326 TAAACGTGGTCACAGGTTGTTTGTCTTTGTGATGAATGACTTGATTACTATTAGTTAGTAACTGA
27365719 CTTCTTATGAAAGAAAATGTAATGGTTACCATGAGATAAAATACGATCATATTGGGAGAACAAAT
391 CTTCTTATGAAAGAAAATGTAATGGTTACCATGAGATAAAATACGATCATATTGGGAGAACAAAT
27365784 ATTATCCCAAAGAGATTAAGGATATCATATTAGGGTAACACACATATGACAAGGTCATTGGACGA
456 ATTATCCCAAAGAGATTAAGGATATCATATTAGGGTAACACACATATGACAAGGTCATTGGACGA
*
27365849 GCATTGGTAGAGTTGATTTTGCAATGGTATGCCATTGG
521 GCATTGGTAGAGTTGATTTCGCAATGGTATGCCATTGG
*
27365887 AGAGACATAGATGTGACTGACTAGACTAGCAATACATTGGACTGGACCTAAGAAAAATAGATCCT
1 AGAGACATAGATGTGACTGACTAGACTAGCAATACATTGGACTGGACCTAAGAAAAATAGATCAT
*
27365952 GAATCCATTTATGTCTTTATTCACTTGTGATGTTCATAGTGTGGCATACCTAAATCCTGAGTGGA
66 GAATCCATTTATGTATTTATTCACTTGTGATGTTCATAGTGTGGCATACCTAAATCCTGAGTGGA
**
27366017 TGACGGGCTATGTATGCATGACTCGTACACTTTTATGTAAGTAAAAGCTTGCGTTTGAATAGATA
131 TGACGGGCTATGTATGCATGACTCGTACACTTTTATGTAAGTAAAAGCTTAAGTTTGAATAGATA
27366082 AGGAACCGAAAGCTGGTGTGTTGGATGTACGAA-TTCTACAATATGTAGCTTAATTTACAATAAT
196 AGGAACCGAAAGCTGGTGTGTTGGATGTAC-AACTTCTACAATATGTAGCTTAATTTACAATAAT
* *
27366146 GGAATTCATAGCCTAAGACATGGGTAAATAATATCCTCTCATTTACATTACACAGTTGATGATAA
260 GGAATTCATAGCCCAAGACATGGGTAAATAATATCCTCTCATTTACATTACACAGTTGATGAAAA
* * *
27366211 GTAAACGTGGTCATAGGTTGTTTGTGTTTGTGATGAATGACTTGATTACTATTAGTTAGTAATTG
325 GTAAACGTGGTCACAGGTTGTTTGTCTTTGTGATGAATGACTTGATTACTATTAGTTAGTAACTG
*
27366276 ACTT-TTCATGAAAGAAAATGTAATGGTTACCATGAGATAAAATAGGATCATATTGGGAGAACAA
390 ACTTCTT-ATGAAAGAAAATGTAATGGTTACCATGAGATAAAATACGATCATATTGGGAGAACAA
* *
27366340 ATATTATCCCAAAGAGATTAAGGATATCCTATTAGGGTAACACATATATGACAAGGTCATTGGAC
454 ATATTATCCCAAAGAGATTAAGGATATCATATTAGGGTAACACACATATGACAAGGTCATTGGAC
* *
27366405 GAGTATTGGTAGAGTTGATTTCGTAATGGTATGCCATTGG
519 GAGCATTGGTAGAGTTGATTTCGCAATGGTATGCCATTGG
27366445 AGAGA
1 AGAGA
27366450 GCTCAGTCTG
Statistics
Matches: 542, Mismatches: 19, Indels: 4
0.96 0.03 0.01
Matches are distributed among these distances:
557 2 0.00
558 538 0.99
559 2 0.00
ACGTcount: A:0.34, C:0.13, G:0.21, T:0.32
Consensus pattern (558 bp):
AGAGACATAGATGTGACTGACTAGACTAGCAATACATTGGACTGGACCTAAGAAAAATAGATCAT
GAATCCATTTATGTATTTATTCACTTGTGATGTTCATAGTGTGGCATACCTAAATCCTGAGTGGA
TGACGGGCTATGTATGCATGACTCGTACACTTTTATGTAAGTAAAAGCTTAAGTTTGAATAGATA
AGGAACCGAAAGCTGGTGTGTTGGATGTACAACTTCTACAATATGTAGCTTAATTTACAATAATG
GAATTCATAGCCCAAGACATGGGTAAATAATATCCTCTCATTTACATTACACAGTTGATGAAAAG
TAAACGTGGTCACAGGTTGTTTGTCTTTGTGATGAATGACTTGATTACTATTAGTTAGTAACTGA
CTTCTTATGAAAGAAAATGTAATGGTTACCATGAGATAAAATACGATCATATTGGGAGAACAAAT
ATTATCCCAAAGAGATTAAGGATATCATATTAGGGTAACACACATATGACAAGGTCATTGGACGA
GCATTGGTAGAGTTGATTTCGCAATGGTATGCCATTGG
Found at i:27367734 original size:50 final size:50
Alignment explanation
Indices: 27367669--27367800 Score: 147
Period size: 50 Copynumber: 2.6 Consensus size: 50
27367659 GGAACGAGAT
* ***
27367669 CCCATGTAAGACCATGTCTGGGACATGGCATTACCACCGAGATGAGAGGT
1 CCCACGTAAGACCATGTCTGGGACATGGCATTACCACCGAGATGAGAACA
* * *** *
27367719 CCCCCGTAAGACCATGTTTGGGACATGGCATGGGCACCGATATGAGAACA
1 CCCACGTAAGACCATGTCTGGGACATGGCATTACCACCGAGATGAGAACA
* * *
27367769 CCCATGTAAGACCATATCTGGGATATGGCATT
1 CCCACGTAAGACCATGTCTGGGACATGGCATT
27367801 GGCAGTACAG
Statistics
Matches: 66, Mismatches: 16, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
50 66 1.00
ACGTcount: A:0.28, C:0.24, G:0.27, T:0.21
Consensus pattern (50 bp):
CCCACGTAAGACCATGTCTGGGACATGGCATTACCACCGAGATGAGAACA
Found at i:27379820 original size:21 final size:23
Alignment explanation
Indices: 27379786--27379827 Score: 61
Period size: 22 Copynumber: 1.9 Consensus size: 23
27379776 TTATACAAAC
27379786 AAAATACATAATACA-ATAAAGA
1 AAAATACATAATACATATAAAGA
*
27379808 AAAATATAT-ATACATATAAA
1 AAAATACATAATACATATAAA
27379828 TTATAAAATA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 5 0.28
22 13 0.72
ACGTcount: A:0.67, C:0.07, G:0.02, T:0.24
Consensus pattern (23 bp):
AAAATACATAATACATATAAAGA
Found at i:27380036 original size:28 final size:30
Alignment explanation
Indices: 27379961--27380046 Score: 90
Period size: 28 Copynumber: 2.9 Consensus size: 30
27379951 CATGTACATC
*
27379961 TATAAAAATAATAATTATCTACATATATATA
1 TATAAAAATAATAATAAT-TACATATATATA
*
27379992 TATTATAAAA-AA-GATAATTACATATATATA
1 TA-TA-AAAATAATAATAATTACATATATATA
*
27380022 -A-AAAAATAATAATAATTAAATATAT
1 TATAAAAATAATAATAATTACATATAT
27380047 TGAAATTAAT
Statistics
Matches: 47, Mismatches: 4, Indels: 11
0.76 0.06 0.18
Matches are distributed among these distances:
26 4 0.09
27 3 0.06
28 13 0.28
29 1 0.02
30 12 0.26
31 6 0.13
32 4 0.09
33 4 0.09
ACGTcount: A:0.59, C:0.03, G:0.01, T:0.36
Consensus pattern (30 bp):
TATAAAAATAATAATAATTACATATATATA
Found at i:27380291 original size:3 final size:3
Alignment explanation
Indices: 27380283--27380310 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
27380273 ATGTGTATGT
27380283 ATA ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA A
27380311 CTTCATAACA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:27380353 original size:7 final size:7
Alignment explanation
Indices: 27380334--27380368 Score: 54
Period size: 7 Copynumber: 5.0 Consensus size: 7
27380324 AAATCAAATT
27380334 TAATAAA
1 TAATAAA
27380341 -AATAAA
1 TAATAAA
27380347 TAATAAA
1 TAATAAA
27380354 TAATAAA
1 TAATAAA
27380361 TAAATAAA
1 T-AATAAA
27380369 AAGACTAAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
6 6 0.23
7 14 0.54
8 6 0.23
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (7 bp):
TAATAAA
Found at i:27380546 original size:88 final size:88
Alignment explanation
Indices: 27380388--27381152 Score: 849
Period size: 88 Copynumber: 8.7 Consensus size: 88
27380378 TCGAGGCAAT
* * * * * **
27380388 AAGACTGATGTCTTCGATCTGCTTCACTGCCAGTACAGAAAGGCAAGATCTACTATTTTCAACCT
1 AAGACTGGTGTCTTCGATCTGCTTCGCTGTCAGTACAGGAAGGCAAGATCTGCTATTTTCAGTCT
* ** **
27380453 ACTCCACTGC-TGCTCAGGGAGAT
66 GCTCCACTGCAACCT-AGGGAGGC
* * * * ** * *
27380476 AAGGCCGGAT-TTTTCGATTTGCTTCGCTACCGGTACAGGAAGGCAAGATCTGCTATCTTCAGTC
1 AAGACTGG-TGTCTTCGATCTGCTTCGCTGTCAGTACAGGAAGGCAAGATCTGCTATTTTCAGTC
* *
27380540 TGCTCCACTACAACCTAAGGAGGC
65 TGCTCCACTGCAACCTAGGGAGGC
* * * * * **
27380564 AAGACTGGCGTCTTCAATCTGCTTCGCTGTCAGTACAAGAAGCCAAGATCTACTATTTTCAACCT
1 AAGACTGGTGTCTTCGATCTGCTTCGCTGTCAGTACAGGAAGGCAAGATCTGCTATTTTCAGTCT
* *
27380629 GCTCCGCTACAATCC-AGGGAGGC
66 GCTCCACTGCAA-CCTAGGGAGGC
* * * ** * *
27380652 AAGGCTGGTGTCTTTGATCTGCTTTGCTACCAGTATAGGAAGGTAAGATCTGCTATCTTT-AGTC
1 AAGACTGGTGTCTTCGATCTGCTTCGCTGTCAGTACAGGAAGGCAAGATCTGCTAT-TTTCAGTC
*
27380716 TGCTCCACTGCACCCTAGGGAGGC
65 TGCTCCACTGCAACCTAGGGAGGC
* * *
27380740 AAGACTGGTGTCTTCGATCTGCTTCACCGTCAGTACAGGAAGGCAAGATCTGCTATTTTCA-ACG
1 AAGACTGGTGTCTTCGATCTGCTTCGCTGTCAGTACAGGAAGGCAAGATCTGCTATTTTCAGTC-
* *
27380804 TGCTCCGCTGCAACCCAGGGAGGC
65 TGCTCCACTGCAACCTAGGGAGGC
* * * * * * *
27380828 AAGGCTGGTGTCCTT-GATATGCTTCACTGTCGGTACAGGAAGGCAAGATCTACTGTCTTCAGTC
1 AAGACTGGTGT-CTTCGATCTGCTTCGCTGTCAGTACAGGAAGGCAAGATCTGCTATTTTCAGTC
27380892 TGCTCCACTGCAACCTAGGGAGGC
65 TGCTCCACTGCAACCTAGGGAGGC
* *
27380916 AAGACTGGTATCTTCGATCTGCTTCGCTGTCAGTACAGGAAGGCAAGATCTGCTATCTTCAGTCT
1 AAGACTGGTGTCTTCGATCTGCTTCGCTGTCAGTACAGGAAGGCAAGATCTGCTATTTTCAGTCT
27380981 GCTCCACTGCAACCTAGGGAGGC
66 GCTCCACTGCAACCTAGGGAGGC
* * **
27381004 AAGACTGGTGTCTTCGATCTGCTTCACTGTCAGTACAGGAAGGCAATATCTGCTATTTTCAACCT
1 AAGACTGGTGTCTTCGATCTGCTTCGCTGTCAGTACAGGAAGGCAAGATCTGCTATTTTCAGTCT
* *
27381069 GCTCCGCTGCAACCCAGGGAGGC
66 GCTCCACTGCAACCTAGGGAGGC
* ** * * *
27381092 AAGGCTGGTGTCTTTAATCTGCTTCGCTGCCGGTATAGGAAGGCAAGATCTGCTATTTTCA
1 AAGACTGGTGTCTTCGATCTGCTTCGCTGTCAGTACAGGAAGGCAAGATCTGCTATTTTCA
27381153 ATGATCTGTT
Statistics
Matches: 566, Mismatches: 100, Indels: 22
0.82 0.15 0.03
Matches are distributed among these distances:
87 9 0.02
88 545 0.96
89 12 0.02
ACGTcount: A:0.23, C:0.26, G:0.24, T:0.27
Consensus pattern (88 bp):
AAGACTGGTGTCTTCGATCTGCTTCGCTGTCAGTACAGGAAGGCAAGATCTGCTATTTTCAGTCT
GCTCCACTGCAACCTAGGGAGGC
Found at i:27380785 original size:44 final size:44
Alignment explanation
Indices: 27380560--27381049 Score: 236
Period size: 44 Copynumber: 11.1 Consensus size: 44
27380550 CAACCTAAGG
* * * *
27380560 AGGCAAGACTGGCGTCTTCAATCTGCTTCGCTGTCAGTACAAGA
1 AGGCAAGACTGGTGTCTTCGATCTGCTTCACTGTCAGTACAGGA
* ** * * * * * * * * * *
27380604 AGCCAAGATCTACTATTTTCAACCTGCTCCGCT-ACAATCCAGGG
1 AGGCAAGA-CTGGTGTCTTCGATCTGCTTCACTGTCAGTACAGGA
* * ** ** *
27380648 AGGCAAGGCTGGTGTCTTTGATCTGCTTTGCTACCAGTATAGGA
1 AGGCAAGACTGGTGTCTTCGATCTGCTTCACTGTCAGTACAGGA
* * * * * ** *
27380692 AGGTAAGATCTGCTATCTT-TAGTCTGCTCCACTG-CA-CCCTAGGG
1 AGGCAAGA-CTGGTGTCTTCGA-TCTGCTTCACTGTCAGTAC-AGGA
*
27380736 AGGCAAGACTGGTGTCTTCGATCTGCTTCACCGTCAGTACAGGA
1 AGGCAAGACTGGTGTCTTCGATCTGCTTCACTGTCAGTACAGGA
* * * * * * *** *
27380780 AGGCAAGATCTGCTATTTTC-AACGTGCTCCGCTG-CAACCCAGGG
1 AGGCAAGA-CTGGTGTCTTCGATC-TGCTTCACTGTCAGTACAGGA
* * *
27380824 AGGCAAGGCTGGTGTCCTT-GATATGCTTCACTGTCGGTACAGGA
1 AGGCAAGACTGGTGT-CTTCGATCTGCTTCACTGTCAGTACAGGA
** * *
27380868 AGGCAAGATCTACTGTCTTC-AGTCTGCTCCACTG-CA--ACCTAGGG
1 AGGCAAGA-CTGGTGTCTTCGA-TCTGCTTCACTGTCAGTA-C-AGGA
* *
27380912 AGGCAAGACTGGTATCTTCGATCTGCTTCGCTGTCAGTACAGGA
1 AGGCAAGACTGGTGTCTTCGATCTGCTTCACTGTCAGTACAGGA
* * * *
27380956 AGGCAAGATCTGCTATCTTC-AGTCTGCTCCACTG-CA--ACCTAGGG
1 AGGCAAGA-CTGGTGTCTTCGA-TCTGCTTCACTGTCAGTA-C-AGGA
27381000 AGGCAAGACTGGTGTCTTCGATCTGCTTCACTGTCAGTACAGGA
1 AGGCAAGACTGGTGTCTTCGATCTGCTTCACTGTCAGTACAGGA
27381044 AGGCAA
1 AGGCAA
27381050 TATCTGCTAT
Statistics
Matches: 320, Mismatches: 96, Indels: 60
0.67 0.20 0.13
Matches are distributed among these distances:
42 2 0.01
43 86 0.27
44 144 0.45
45 86 0.27
46 2 0.01
ACGTcount: A:0.23, C:0.26, G:0.25, T:0.26
Consensus pattern (44 bp):
AGGCAAGACTGGTGTCTTCGATCTGCTTCACTGTCAGTACAGGA
Found at i:27381092 original size:44 final size:43
Alignment explanation
Indices: 27380511--27381114 Score: 226
Period size: 44 Copynumber: 13.7 Consensus size: 43
27380501 GCTACCGGTA
* * *
27380511 CAGGAAGGCAAGATCTGCTATCTTCAGTCTGCTCCACTACAACC
1 CAGGGAGGCAAGA-CTGCTATCTTCAATCTGCTCCACTGCAACC
* * * * * ***
27380555 TAAGGAGGCAAGACTGGC-GTCTTCAATCTGCTTCGCTGTCAGTA
1 CAGGGAGGCAAGACT-GCTATCTTCAATCTGCTCCACTG-CAACC
* * * * * * * * *
27380599 CAAGAAGCCAAGATCTACTATTTTCAACCTGCTCCGCTACAATC
1 CAGGGAGGCAAGA-CTGCTATCTTCAATCTGCTCCACTGCAACC
* * * ** *** * ***
27380643 CAGGGAGGCAAGGCTGGTGTCTTTGATCTGCTTTGCTACCAGTA
1 CAGGGAGGCAAGACTGCTATCTTCAATCTGCTCCACT-GCAACC
* * * * *
27380687 TAGGAAGGTAAGATCTGCTATCTTTAGTCTGCTCCACTGC-ACC
1 CAGGGAGGCAAGA-CTGCTATCTTCAATCTGCTCCACTGCAACC
* * * * * ***
27380730 CTAGGGAGGCAAGACTGGTGTCTTCGATCTGCTTCACCGTCAGTA
1 C-AGGGAGGCAAGACTGCTATCTTCAATCTGCTCCACTG-CAACC
* * *
27380775 CAGGAAGGCAAGATCTGCTATTTTCAA-CGTGCTCCGCTGCAACC
1 CAGGGAGGCAAGA-CTGCTATCTTCAATC-TGCTCCACTGCAACC
* * * * * * ****
27380819 CAGGGAGGCAAGGCTGGTGTCCTT-GATATGCTTCACTGTCGGTA
1 CAGGGAGGCAAGACTGCTAT-CTTCAATCTGCTCCACTG-CAACC
* * * *
27380863 CAGGAAGGCAAGATCTACTGTCTTCAGTCTGCTCCACTGCAACC
1 CAGGGAGGCAAGA-CTGCTATCTTCAATCTGCTCCACTGCAACC
* * * * * ***
27380907 TAGGGAGGCAAGACTGGTATCTTCGATCTGCTTCGCTGTCAGTA
1 CAGGGAGGCAAGACTGCTATCTTCAATCTGCTCCACTG-CAACC
* *
27380951 CAGGAAGGCAAGATCTGCTATCTTCAGTCTGCTCCACTGCAACC
1 CAGGGAGGCAAGA-CTGCTATCTTCAATCTGCTCCACTGCAACC
* * * * * ***
27380995 TAGGGAGGCAAGACTGGTGTCTTCGATCTGCTTCACTGTCAGTA
1 CAGGGAGGCAAGACTGCTATCTTCAATCTGCTCCACTG-CAACC
* * * * *
27381039 CAGGAAGGCAATATCTGCTATTTTCAACCTGCTCCGCTGCAACC
1 CAGGGAGGCAAGA-CTGCTATCTTCAATCTGCTCCACTGCAACC
* * * *
27381083 CAGGGAGGCAAGGCTGGTGTCTTTAATCTGCT
1 CAGGGAGGCAAGACTGCTATCTTCAATCTGCT
27381115 TCGCTGCCGG
Statistics
Matches: 385, Mismatches: 155, Indels: 41
0.66 0.27 0.07
Matches are distributed among these distances:
43 116 0.30
44 165 0.43
45 104 0.27
ACGTcount: A:0.23, C:0.26, G:0.25, T:0.26
Consensus pattern (43 bp):
CAGGGAGGCAAGACTGCTATCTTCAATCTGCTCCACTGCAACC
Found at i:27382399 original size:11 final size:11
Alignment explanation
Indices: 27382383--27382420 Score: 60
Period size: 11 Copynumber: 3.5 Consensus size: 11
27382373 CTTTCCTTTT
27382383 TTTTTTTGCTA
1 TTTTTTTGCTA
27382394 TTTTTTTGCTA
1 TTTTTTTGCTA
*
27382405 TTTTTTT-ATA
1 TTTTTTTGCTA
27382415 TTTTTT
1 TTTTTT
27382421 ATATTTTTGA
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
10 8 0.31
11 18 0.69
ACGTcount: A:0.11, C:0.05, G:0.05, T:0.79
Consensus pattern (11 bp):
TTTTTTTGCTA
Found at i:27382517 original size:14 final size:15
Alignment explanation
Indices: 27382494--27382526 Score: 50
Period size: 14 Copynumber: 2.3 Consensus size: 15
27382484 ATCGACGCTT
27382494 TTCCAAATAAGG-CC
1 TTCCAAATAAGGTCC
*
27382508 TTCCACATAAGGTCC
1 TTCCAAATAAGGTCC
27382523 TTCC
1 TTCC
27382527 CAGCTTGGGA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 11 0.65
15 6 0.35
ACGTcount: A:0.27, C:0.33, G:0.12, T:0.27
Consensus pattern (15 bp):
TTCCAAATAAGGTCC
Found at i:27383400 original size:25 final size:26
Alignment explanation
Indices: 27383349--27383409 Score: 70
Period size: 26 Copynumber: 2.3 Consensus size: 26
27383339 AAGAAAATCC
* **
27383349 AAAAGAATGAAAGAATAATTATTTCA
1 AAAAGAATGAAAAAATAATTAGCTCA
*
27383375 AAAAGAATGAAAAAAT-ATTGGCTCA
1 AAAAGAATGAAAAAATAATTAGCTCA
27383400 AAAATGAATG
1 AAAA-GAATG
27383410 CAAAGATGTA
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
25 10 0.33
26 20 0.67
ACGTcount: A:0.57, C:0.05, G:0.15, T:0.23
Consensus pattern (26 bp):
AAAAGAATGAAAAAATAATTAGCTCA
Found at i:27387514 original size:30 final size:29
Alignment explanation
Indices: 27387480--27387571 Score: 87
Period size: 30 Copynumber: 3.1 Consensus size: 29
27387470 ATACATGTAC
* *
27387480 ATATATAAATAATAATAATTATCTACATAT
1 ATATAAAAATAATAATAATAAT-TACATAT
** *
27387510 ATATAGATTATAA-AAAAGATAATTACATAT
1 ATATA-AAAATAATAATA-ATAATTACATAT
*
27387540 ATATAAAAACAAATAATAATAATTACATAT
1 ATATAAAAA-TAATAATAATAATTACATAT
27387570 AT
1 AT
27387572 TGAAATTAAT
Statistics
Matches: 49, Mismatches: 9, Indels: 8
0.74 0.14 0.12
Matches are distributed among these distances:
29 2 0.04
30 36 0.73
31 11 0.22
ACGTcount: A:0.58, C:0.05, G:0.02, T:0.35
Consensus pattern (29 bp):
ATATAAAAATAATAATAATAATTACATAT
Found at i:27387599 original size:2 final size:2
Alignment explanation
Indices: 27387592--27387618 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
27387582 TAATTTAGAA
27387592 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
27387619 AATTTATGAG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:27387742 original size:17 final size:17
Alignment explanation
Indices: 27387720--27387763 Score: 63
Period size: 17 Copynumber: 2.6 Consensus size: 17
27387710 TAGGAAATAA
27387720 AAAATGTATATGTATAT
1 AAAATGTATATGTATAT
*
27387737 AAAATGTAAATGTATAT
1 AAAATGTATATGTATAT
*
27387754 -ATATGTATAT
1 AAAATGTATAT
27387764 AAAAGTTATG
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
16 8 0.33
17 16 0.67
ACGTcount: A:0.48, C:0.00, G:0.11, T:0.41
Consensus pattern (17 bp):
AAAATGTATATGTATAT
Found at i:27387888 original size:3 final size:3
Alignment explanation
Indices: 27387882--27387917 Score: 65
Period size: 3 Copynumber: 12.3 Consensus size: 3
27387872 ATGCATATGT
27387882 ATA ATA ATA AT- ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
27387918 CTTAATAACA
Statistics
Matches: 32, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
2 2 0.06
3 30 0.94
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:27387897 original size:11 final size:11
Alignment explanation
Indices: 27387881--27387963 Score: 64
Period size: 11 Copynumber: 7.5 Consensus size: 11
27387871 TATGCATATG
27387881 TATAATAATAA
1 TATAATAATAA
27387892 TATAATAATAA
1 TATAATAATAA
27387903 TAATAATAATAA
1 T-ATAATAATAA
*
27387915 TAACTTAATAACAA
1 T-A--TAATAATAA
* * *
27387929 GAAAATCA-AA
1 TATAATAATAA
*
27387939 TTTAATAATAA
1 TATAATAATAA
27387950 TA-AATAATAA
1 TATAATAATAA
27387960 -ATAA
1 TATAA
27387964 ATAAAAAGAC
Statistics
Matches: 58, Mismatches: 9, Indels: 11
0.74 0.12 0.14
Matches are distributed among these distances:
9 1 0.02
10 16 0.28
11 19 0.33
12 13 0.22
13 1 0.02
14 8 0.14
ACGTcount: A:0.64, C:0.04, G:0.01, T:0.31
Consensus pattern (11 bp):
TATAATAATAA
Found at i:27387907 original size:20 final size:21
Alignment explanation
Indices: 27387882--27387959 Score: 65
Period size: 20 Copynumber: 3.8 Consensus size: 21
27387872 ATGCATATGT
27387882 ATAATAATAAT-ATAATAATA
1 ATAATAATAATAATAATAATA
27387902 ATAATAATAATAATAACTTAATA
1 ATAATAATAATAATAA--TAATA
* * * *
27387925 ACAAGAA-AATCA-AAT-TTA
1 ATAATAATAATAATAATAATA
27387943 ATAATAATAAATAATAA
1 ATAATAAT-AATAATAA
27387960 ATAAATAAAA
Statistics
Matches: 45, Mismatches: 7, Indels: 11
0.71 0.11 0.17
Matches are distributed among these distances:
18 7 0.16
19 1 0.02
20 15 0.33
21 8 0.18
22 4 0.09
23 10 0.22
ACGTcount: A:0.64, C:0.04, G:0.01, T:0.31
Consensus pattern (21 bp):
ATAATAATAATAATAATAATA
Found at i:27388300 original size:21 final size:20
Alignment explanation
Indices: 27388259--27388310 Score: 79
Period size: 21 Copynumber: 2.6 Consensus size: 20
27388249 AATCACATCT
*
27388259 TCTAAGATTGC-ATATCGTA
1 TCTAAGATTGCAATATCATA
27388278 TCTAAGATTGCATATATCATA
1 TCTAAGATTGCA-ATATCATA
27388299 TCTAAGATTGCA
1 TCTAAGATTGCA
27388311 CATCCTTGAA
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
19 11 0.37
21 19 0.63
ACGTcount: A:0.35, C:0.15, G:0.13, T:0.37
Consensus pattern (20 bp):
TCTAAGATTGCAATATCATA
Found at i:27390295 original size:30 final size:28
Alignment explanation
Indices: 27390255--27390320 Score: 80
Period size: 30 Copynumber: 2.2 Consensus size: 28
27390245 TTAAATTTAA
27390255 TAAATAATTAATATTA-ATTACTTAGAAATAT
1 TAAA-AATTAATATTATA-TA-TTA-AAATAT
*
27390286 TTAAAATTAATATTATATATTAAAATAT
1 TAAAAATTAATATTATATATTAAAATAT
27390314 TAAAAAT
1 TAAAAAT
27390321 AAGTTATAAT
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
28 12 0.38
29 3 0.09
30 13 0.41
31 4 0.12
ACGTcount: A:0.55, C:0.02, G:0.02, T:0.42
Consensus pattern (28 bp):
TAAAAATTAATATTATATATTAAAATAT
Found at i:27390319 original size:28 final size:30
Alignment explanation
Indices: 27390255--27390320 Score: 84
Period size: 28 Copynumber: 2.2 Consensus size: 30
27390245 TTAAATTTAA
27390255 TAAATAATTAATATTAATTACTTAGAAATAT
1 TAAA-AATTAATATTAATTACTTAGAAATAT
*
27390286 TTAAAATTAATATT-ATATA-TTA-AAATAT
1 TAAAAATTAATATTAAT-TACTTAGAAATAT
27390314 TAAAAAT
1 TAAAAAT
27390321 AAGTTATAAT
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
28 12 0.38
29 5 0.16
30 12 0.38
31 3 0.09
ACGTcount: A:0.55, C:0.02, G:0.02, T:0.42
Consensus pattern (30 bp):
TAAAAATTAATATTAATTACTTAGAAATAT
Found at i:27390862 original size:18 final size:18
Alignment explanation
Indices: 27390828--27390873 Score: 58
Period size: 19 Copynumber: 2.6 Consensus size: 18
27390818 TAACCGGTTC
*
27390828 AAATAAAAAATTATTAAA
1 AAATAAAAAAATATTAAA
*
27390846 ACATTAAAAAAAT-TTAAA
1 A-AATAAAAAAATATTAAA
27390864 AAATAAAAAA
1 AAATAAAAAA
27390874 TCTAATTCAA
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
17 8 0.33
18 7 0.29
19 9 0.38
ACGTcount: A:0.74, C:0.02, G:0.00, T:0.24
Consensus pattern (18 bp):
AAATAAAAAAATATTAAA
Found at i:27394306 original size:43 final size:42
Alignment explanation
Indices: 27394259--27394437 Score: 186
Period size: 43 Copynumber: 4.2 Consensus size: 42
27394249 AAGGAAATAC
27394259 ACGCCACT-AAAGATCA-TGTTCTTTAGCGGCGCTTTTTCATAAA
1 ACGCCACTAAAAG-T-AGTGTTCTTTAGCGGCGCTTTTTCA-AAA
* * ***
27394302 ACGCCGCT-AAAGATCA-TGTTCTTTAGTGGCGCTTTGGAAGAAA
1 ACGCCACTAAAAG-T-AGTGTTCTTTAGCGGCGCTTTTTCA-AAA
* *
27394345 ACGCCTCTAAAAGTAGTGTTCTTTAGCGGCGCTTGTTCAAAA
1 ACGCCACTAAAAGTAGTGTTCTTTAGCGGCGCTTTTTCAAAA
* *
27394387 ACGCCGCTAAAAGTAGTGTTCTTTAGCGGCGCTTGTTTCACAA
1 ACGCCACTAAAAGTAGTGTTCTTTAGCGGCGCTT-TTTCAAAA
27394430 ACGCCACT
1 ACGCCACT
27394438 GTTTTGATAT
Statistics
Matches: 117, Mismatches: 16, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
42 37 0.32
43 76 0.65
44 4 0.03
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (42 bp):
ACGCCACTAAAAGTAGTGTTCTTTAGCGGCGCTTTTTCAAAA
Found at i:27394401 original size:42 final size:43
Alignment explanation
Indices: 27394275--27394423 Score: 189
Period size: 43 Copynumber: 3.5 Consensus size: 43
27394265 CTAAAGATCA
* *
27394275 TGTTCTTTAGCGGCGCTTTTTCATAAAACGCCGCT-AAAGATCA-
1 TGTTCTTTAGCGGCGCTTGTTCAGAAAACGCCGCTAAAAG-T-AG
* ** *
27394318 TGTTCTTTAGTGGCGCTT-TGGAAGAAAACGCCTCTAAAAGTAG
1 TGTTCTTTAGCGGCGCTTGT-TCAGAAAACGCCGCTAAAAGTAG
27394361 TGTTCTTTAGCGGCGCTTGTTCA-AAAACGCCGCTAAAAGTAG
1 TGTTCTTTAGCGGCGCTTGTTCAGAAAACGCCGCTAAAAGTAG
27394403 TGTTCTTTAGCGGCGCTTGTT
1 TGTTCTTTAGCGGCGCTTGTT
27394424 TCACAAACGC
Statistics
Matches: 93, Mismatches: 9, Indels: 9
0.84 0.08 0.08
Matches are distributed among these distances:
42 41 0.44
43 47 0.51
44 5 0.05
ACGTcount: A:0.23, C:0.20, G:0.23, T:0.33
Consensus pattern (43 bp):
TGTTCTTTAGCGGCGCTTGTTCAGAAAACGCCGCTAAAAGTAG
Found at i:27394434 original size:85 final size:86
Alignment explanation
Indices: 27394213--27394420 Score: 257
Period size: 86 Copynumber: 2.4 Consensus size: 86
27394203 CTTACAGAAA
* * ** * *
27394213 AAAACGCCGCTAAAGAACATGATCTTTAGCGGCGCTAAGGAA-ATACACGCCACT-AAAGATCA-
1 AAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTTGGAAGA-AAACGCCTCTAAAAG-T-AG
*
27394275 TGTTCTTTAGCGGCGCTTTTTCAT
63 TGTTCTTTAGCGGCGCTTGTTCAT
*
27394299 AAAACGCCGCTAAAGATCATGTTCTTTAGTGGCGCTTTGGAAGAAAACGCCTCTAAAAGTAGTGT
1 AAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTTGGAAGAAAACGCCTCTAAAAGTAGTGT
27394364 TCTTTAGCGGCGCTTGTTCA-
66 TCTTTAGCGGCGCTTGTTCAT
27394384 AAAACGCCGCTAAA-AGT-AGTGTTCTTTAGCGGCGCTT
1 AAAACGCCGCTAAAGA-TCA-TGTTCTTTAGCGGCGCTT
27394421 GTTTCACAAA
Statistics
Matches: 108, Mismatches: 9, Indels: 11
0.84 0.07 0.09
Matches are distributed among these distances:
84 2 0.02
85 33 0.31
86 68 0.63
87 5 0.05
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (86 bp):
AAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTTGGAAGAAAACGCCTCTAAAAGTAGTGT
TCTTTAGCGGCGCTTGTTCAT
Found at i:27394499 original size:44 final size:44
Alignment explanation
Indices: 27394408--27394492 Score: 116
Period size: 44 Copynumber: 1.9 Consensus size: 44
27394398 AGTAGTGTTC
* * * *
27394408 TTTAGCGGCGCTTGTTTCACAAACGCCACTGTTTTGATATGACT
1 TTTAGCGGCGCTTGTTTAAAAAACGCCACTATTTTGAGATGACT
*
27394452 TTTAGCGGCGCTTTTTTAAAAAACGCCACTAATTTTGAGAT
1 TTTAGCGGCGCTTGTTTAAAAAACGCCACT-ATTTTGAGAT
27394493 TTTTTTAAAA
Statistics
Matches: 35, Mismatches: 5, Indels: 1
0.85 0.12 0.02
Matches are distributed among these distances:
44 27 0.77
45 8 0.23
ACGTcount: A:0.25, C:0.20, G:0.19, T:0.36
Consensus pattern (44 bp):
TTTAGCGGCGCTTGTTTAAAAAACGCCACTATTTTGAGATGACT
Found at i:27394879 original size:21 final size:21
Alignment explanation
Indices: 27394855--27394912 Score: 89
Period size: 21 Copynumber: 2.8 Consensus size: 21
27394845 ACTTCTATCG
*
27394855 CTGCTTCTCTCGCTGCGGCCT
1 CTGCTTCTCTCGCTGCAGCCT
*
27394876 CTGCTTCTCTCGCTGTAGCCT
1 CTGCTTCTCTCGCTGCAGCCT
*
27394897 CTGCTTCCCTCGCTGC
1 CTGCTTCTCTCGCTGC
27394913 CACCTGTGCT
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 33 1.00
ACGTcount: A:0.02, C:0.43, G:0.21, T:0.34
Consensus pattern (21 bp):
CTGCTTCTCTCGCTGCAGCCT
Found at i:27394922 original size:21 final size:21
Alignment explanation
Indices: 27394855--27394923 Score: 77
Period size: 21 Copynumber: 3.3 Consensus size: 21
27394845 ACTTCTATCG
**
27394855 CTGCTTCTCTCGCTGCGGCCT
1 CTGCTTCTCTCGCTGCCACCT
*
27394876 CTGCTTCTCTCGCTG-TAGCCT
1 CTGCTTCTCTCGCTGCCA-CCT
*
27394897 CTGCTTCCCTCGCTGCCACCT
1 CTGCTTCTCTCGCTGCCACCT
*
27394918 GTGCTT
1 CTGCTT
27394924 TAAGTTGTTG
Statistics
Matches: 41, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
21 40 0.98
22 1 0.02
ACGTcount: A:0.03, C:0.42, G:0.20, T:0.35
Consensus pattern (21 bp):
CTGCTTCTCTCGCTGCCACCT
Found at i:27400476 original size:9 final size:9
Alignment explanation
Indices: 27400462--27400712 Score: 176
Period size: 9 Copynumber: 29.8 Consensus size: 9
27400452 AAGTTATTTA
27400462 TTATGTAAG
1 TTATGTAAG
27400471 TTATGTAAG
1 TTATGTAAG
*
27400480 TTGTGTAAG
1 TTATGTAAG
27400489 TTATGTAAG
1 TTATGTAAG
* *
27400498 CTGTGTAAG
1 TTATGTAAG
*
27400507 TTGTGT-A-
1 TTATGTAAG
* *
27400514 TTATGAAAC
1 TTATGTAAG
27400523 TTATGTAAG
1 TTATGTAAG
*
27400532 TTGTGT-A-
1 TTATGTAAG
27400539 TTATGTAAG
1 TTATGTAAG
*
27400548 TTATGTCAG
1 TTATGTAAG
*
27400557 TTGTGT-A-
1 TTATGTAAG
* *
27400564 TTATGAAAC
1 TTATGTAAG
27400573 TTATGTAAG
1 TTATGTAAG
*
27400582 TTATGT--C
1 TTATGTAAG
27400589 TTATGTAAG
1 TTATGTAAG
*
27400598 TTATGTAAA
1 TTATGTAAG
*
27400607 ATATGT-A-
1 TTATGTAAG
27400614 TTATGTAAG
1 TTATGTAAG
*
27400623 TTATGTCAG
1 TTATGTAAG
*
27400632 TTGTGT-A-
1 TTATGTAAG
*
27400639 TTATGTAAA
1 TTATGTAAG
27400648 TTATGT-A-
1 TTATGTAAG
*
27400655 TTTTGTAAG
1 TTATGTAAG
*
27400664 TTATGTAAT
1 TTATGTAAG
*
27400673 TTGTGTAA-
1 TTATGTAAG
*
27400681 -TATGTAAC
1 TTATGTAAG
* *
27400689 TTATTTAAT
1 TTATGTAAG
27400698 TTATGTAAG
1 TTATGTAAG
27400707 -TATGTA
1 TTATGTA
27400713 TTATTATGTA
Statistics
Matches: 192, Mismatches: 34, Indels: 33
0.74 0.13 0.13
Matches are distributed among these distances:
7 40 0.21
8 18 0.09
9 134 0.70
ACGTcount: A:0.30, C:0.03, G:0.20, T:0.47
Consensus pattern (9 bp):
TTATGTAAG
Found at i:27400480 original size:25 final size:25
Alignment explanation
Indices: 27400451--27400759 Score: 252
Period size: 25 Copynumber: 12.2 Consensus size: 25
27400441 GATTTAGGAA
* *
27400451 TAAGTTATTTATTATGTAAGTTATG
1 TAAGTTGTGTATTATGTAAGTTATG
* *
27400476 TAAGTTGTGTAAGTTATGTAAGCTGTG
1 TAAGTTGTGT-A-TTATGTAAGTTATG
* *
27400503 TAAGTTGTGTATTATGAAACTTATG
1 TAAGTTGTGTATTATGTAAGTTATG
27400528 TAAGTTGTGTATTATGTAAGTTATG
1 TAAGTTGTGTATTATGTAAGTTATG
* * *
27400553 TCAGTTGTGTATTATGAAACTTATG
1 TAAGTTGTGTATTATGTAAGTTATG
* *
27400578 TAAGTTATGTCTTATGTAAGTTATG
1 TAAGTTGTGTATTATGTAAGTTATG
** *
27400603 TAAAATATGTATTATGTAAGTTATG
1 TAAGTTGTGTATTATGTAAGTTATG
* *
27400628 TCAGTTGTGTATTATGTAAATTATG
1 TAAGTTGTGTATTATGTAAGTTATG
* * *
27400653 T-A-TTTTGTAAGTTATGTAATTTGTG
1 TAAGTTGTGT-A-TTATGTAAGTTATG
* * *
27400678 TAA-TATGT-AACTTATTTAATTTATG
1 TAAGT-TGTGTA-TTATGTAAGTTATG
* *
27400703 TAAGTATGTATTATTATGTAATTTAT-
1 TAAGT-TGT-GTATTATGTAAGTTATG
* * *
27400729 TATGTAG-GATATTATCTAAGTTATG
1 TAAGTTGTG-TATTATGTAAGTTATG
27400754 TAAGTT
1 TAAGTT
27400760 TTTTTTTTGG
Statistics
Matches: 230, Mismatches: 43, Indels: 22
0.78 0.15 0.07
Matches are distributed among these distances:
23 5 0.02
24 15 0.07
25 160 0.70
26 13 0.06
27 36 0.16
28 1 0.00
ACGTcount: A:0.31, C:0.03, G:0.19, T:0.48
Consensus pattern (25 bp):
TAAGTTGTGTATTATGTAAGTTATG
Found at i:27400542 original size:16 final size:16
Alignment explanation
Indices: 27400451--27400670 Score: 120
Period size: 16 Copynumber: 13.7 Consensus size: 16
27400441 GATTTAGGAA
*
27400451 TAAGTTATTTATTATG
1 TAAGTTATGTATTATG
*
27400467 TAAGTTATGTAAGTTGTG
1 TAAGTTATGT-A-TTATG
* *
27400485 TAAGTTATGTAAGCTGTG
1 TAAGTTATGT-A-TTATG
*
27400503 TAAGTTGTGTATTATG
1 TAAGTTATGTATTATG
*
27400519 -AA---A---CTTATG
1 TAAGTTATGTATTATG
*
27400528 TAAGTTGTGTATTATG
1 TAAGTTATGTATTATG
*
27400544 TAAGTTATGTCAGTTGTG
1 TAAGTTATGT-A-TTATG
*
27400562 T-A-TTATGAAACTTATG
1 TAAGTTATG-TA-TTATG
*
27400578 TAAGTTATGTCTTATG
1 TAAGTTATGTATTATG
*
27400594 TAAGTTATGTAAAATATG
1 TAAGTTATGT--ATTATG
27400612 T-A-TTATGTAAGTTATG
1 TAAGTTATGT-A-TTATG
* *
27400628 TCAGTTGTGTATTATG
1 TAAGTTATGTATTATG
* *
27400644 TAAATTATGTATTTTG
1 TAAGTTATGTATTATG
27400660 TAAGTTATGTA
1 TAAGTTATGTA
27400671 ATTTGTGTAA
Statistics
Matches: 159, Mismatches: 26, Indels: 38
0.71 0.12 0.17
Matches are distributed among these distances:
9 5 0.03
10 2 0.01
15 4 0.03
16 90 0.57
17 8 0.05
18 50 0.31
ACGTcount: A:0.30, C:0.03, G:0.20, T:0.47
Consensus pattern (16 bp):
TAAGTTATGTATTATG
Found at i:27400568 original size:41 final size:41
Alignment explanation
Indices: 27400523--27400711 Score: 173
Period size: 41 Copynumber: 4.8 Consensus size: 41
27400513 ATTATGAAAC
* *
27400523 TTATGTAAGTTGTGTATTATGTAAGTTATGTCAGTTGTGTA
1 TTATGTAAATTATGTATTATGTAAGTTATGTCAGTTGTGTA
* *
27400564 TTATG--AA--A---CTTATGTAAGTTATGTC--TTATGTAA
1 TTATGTAAATTATGTATTATGTAAGTTATGTCAGTTGTGT-A
*
27400597 GTTATGTAAAATATGTATTATGTAAGTTATGTCAGTTGTGTA
1 -TTATGTAAATTATGTATTATGTAAGTTATGTCAGTTGTGTA
* * *
27400639 TTATGTAAATTATGTATTTTGTAAGTTATGTAATTTGTGTA
1 TTATGTAAATTATGTATTATGTAAGTTATGTCAGTTGTGTA
* * *
27400680 ATATGTAACTTATTTAATTTATGTAAG-TATGT
1 TTATGTAAATTATGT-A-TTATGTAAGTTATGT
27400712 ATTATTATGT
Statistics
Matches: 121, Mismatches: 14, Indels: 25
0.76 0.09 0.16
Matches are distributed among these distances:
32 5 0.04
33 1 0.01
34 21 0.17
36 2 0.02
38 1 0.01
39 1 0.01
41 70 0.58
42 7 0.06
43 13 0.11
ACGTcount: A:0.30, C:0.03, G:0.19, T:0.49
Consensus pattern (41 bp):
TTATGTAAATTATGTATTATGTAAGTTATGTCAGTTGTGTA
Found at i:27401023 original size:15 final size:15
Alignment explanation
Indices: 27401003--27401035 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
27400993 ATAATTATTT
*
27401003 ATAAATTTAATAGTA
1 ATAAATTTAATACTA
27401018 ATAAATTTAATACTA
1 ATAAATTTAATACTA
27401033 ATA
1 ATA
27401036 TAGAAACCTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.55, C:0.03, G:0.03, T:0.39
Consensus pattern (15 bp):
ATAAATTTAATACTA
Found at i:27402270 original size:16 final size:16
Alignment explanation
Indices: 27402237--27402270 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
27402227 CGGGGAAACT
*
27402237 GGGGGAATAAGAATTG
1 GGGGGAATAAGAAATG
*
27402253 GGGGGAATACGAAATG
1 GGGGGAATAAGAAATG
27402269 GG
1 GG
27402271 AAATTAGGGA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.35, C:0.03, G:0.47, T:0.15
Consensus pattern (16 bp):
GGGGGAATAAGAAATG
Found at i:27404046 original size:257 final size:263
Alignment explanation
Indices: 27403434--27404232 Score: 1297
Period size: 257 Copynumber: 3.0 Consensus size: 263
27403424 GTATTTTGCT
* *
27403434 TTTTTGCGGTGTTTTAACGTCAGCGCCACTAATTGAAGTATACATCGAGACCAAAATGGTGCGTT
1 TTTTTGCGGCGTTTTAACGTCAGCGCCACTAATTGAAGTATACATCGAGACCAAAACGGTGCGTT
* * *
27403499 TTGGTTCAGATATTTTGTGGCATTTTCCTATAAGCGCCACTAAATGTAACACAGCTTAAGACAAA
66 TTGGTTCAGATATTTTGTGGCGTTTTCCTATAAGCGCCACTAAATGTAACATAGCTTAAGACCAA
* * * *
27403564 ACATTACGTTTTGTTAAGATACATTGCGGCGCTTTGGATCAAGCGCCGCTAAAGCTATTCTTTAA
131 ACACTGCGTTTTGTTAAGATACGTTGCGGCGCTTTGGCTCAAGCGCCGCTAAAGCTATTCTTTAA
27403629 CGGCGTTTTCTAGTAAGCGCCACTAATATAAGTATACATCAAAATTAAAACTACGCGTTTTAGTT
196 CGGCG-TTTCTAGTAAGCGCCACTAATATAAGTAT--ATCAAAATTAAAACTACGCGTTTTAGTT
27403694 AAGATA
258 AAGATA
*
27403700 TTTTTGCGGCGTTTTAACGTCAGCGCCACTAATTGAAGTATACATCGAGACCAAAACGGTGTGTT
1 TTTTTGCGGCGTTTTAACGTCAGCGCCACTAATTGAAGTATACATCGAGACCAAAACGGTGCGTT
* * *
27403765 TTGGTTCAGAAATTTTGCGGCGTTTTCCTATAAGCACCACTAAATGTAACATAGCTTAAGACCAA
66 TTGGTTCAGATATTTTGTGGCGTTTTCCTATAAGCGCCACTAAATGTAACATAGCTTAAGACCAA
*
27403830 ACACTGCGTTTTGTTAAGATACGTTGCGGCACTTTGGCTCAAGCGCCGCTAAAGCTATTCTTTAA
131 ACACTGCGTTTTGTTAAGATACGTTGCGGCGCTTTGGCTCAAGCGCCGCTAAAGCTATTCTTTAA
*
27403895 CGGC-ATTCTAGTAAGCGCCACT-A-AT-A-TAT-TCAAAATTAAAACTACGCGTTTTAGTTAAG
196 CGGCGTTTCTAGTAAGCGCCACTAATATAAGTATATCAAAATTAAAACTACGCGTTTTAGTTAAG
27403954 ATA
261 ATA
* * *
27403957 TTTTTGCGGCGTTTTAACTTCAGCGCCTCTAATTGAAGTATACATCGAGACCAAAACGATGCGTT
1 TTTTTGCGGCGTTTTAACGTCAGCGCCACTAATTGAAGTATACATCGAGACCAAAACGGTGCGTT
* *
27404022 TTGGTTTAGATTTTTTGTGGCGTTTTCCTATAAGCGCCACTAAATGTAACATAGCTTAAGACCAA
66 TTGGTTCAGATATTTTGTGGCGTTTTCCTATAAGCGCCACTAAATGTAACATAGCTTAAGACCAA
27404087 ACACTGCGTTTTGTTAAGATACGTTGCGGCGCTTTGGCTCAAGCGCCGCTAAAGCTATTCTTTAA
131 ACACTGCGTTTTGTTAAGATACGTTGCGGCGCTTTGGCTCAAGCGCCGCTAAAGCTATTCTTTAA
* *
27404152 CGGCGTTTTCTAGTAAGCGCCACTAATATAAGTATACATCAAAATTAAAACTATGCGTTTTAGTA
196 CGGCG-TTTCTAGTAAGCGCCACTAATATAAGTAT--ATCAAAATTAAAACTACGCGTTTTAGTT
27404217 AAGATA
258 AAGATA
27404223 -TTTTGCGGCG
1 TTTTTGCGGCG
27404233 CTTTCTACGA
Statistics
Matches: 496, Mismatches: 28, Indels: 19
0.91 0.05 0.03
Matches are distributed among these distances:
257 222 0.45
259 17 0.03
260 4 0.01
261 3 0.01
262 3 0.01
263 4 0.01
264 17 0.03
265 10 0.02
266 216 0.44
ACGTcount: A:0.29, C:0.19, G:0.19, T:0.32
Consensus pattern (263 bp):
TTTTTGCGGCGTTTTAACGTCAGCGCCACTAATTGAAGTATACATCGAGACCAAAACGGTGCGTT
TTGGTTCAGATATTTTGTGGCGTTTTCCTATAAGCGCCACTAAATGTAACATAGCTTAAGACCAA
ACACTGCGTTTTGTTAAGATACGTTGCGGCGCTTTGGCTCAAGCGCCGCTAAAGCTATTCTTTAA
CGGCGTTTCTAGTAAGCGCCACTAATATAAGTATATCAAAATTAAAACTACGCGTTTTAGTTAAG
ATA
Found at i:27404368 original size:116 final size:111
Alignment explanation
Indices: 27404198--27404445 Score: 257
Period size: 112 Copynumber: 2.2 Consensus size: 111
27404188 CATCAAAATT
* * * * ** *
27404198 AAAACTATGCGTTTTAGTAAAGATATTTTGCGGCGCTTTCTACGAAACGTCGCTAATACGGTGCT
1 AAAACAATGCGTTTTGGTTAAGATATTTTGCGGCGCTATCTAC-AAACACCGCTAAGAC--T-CT
*
27404263 TTAGCGGCGCATATCACAAAGCGCCACTAAATT-TAGGATACGTCAACACCA
62 TTAGCGGCGCATATCA-AAAGCGCCACT-AATTCTAGGATACATCAACACCA
* *
27404314 AAAACGATGCGTTTTGGTTAAGATATTTTGTGGCGCATATCGTA-AAACACCGCTAAGACTCTTT
1 AAAACAATGCGTTTTGGTTAAGATATTTTGCGGCGC-TATC-TACAAACACCGCTAAGACTCTTT
* ** * * * *
27404378 CGCGGCGTTTTTTAGAAGCGCCACTAATTCTAGGATACATCAACACTA
64 AGCGGCGCATATCAAAAGCGCCACTAATTCTAGGATACATCAACACCA
27404426 AAAACAATGCGTTTTGGTTA
1 AAAACAATGCGTTTTGGTTA
27404446 GGAGAAATTA
Statistics
Matches: 112, Mismatches: 17, Indels: 10
0.81 0.12 0.07
Matches are distributed among these distances:
111 4 0.04
112 45 0.40
113 13 0.12
114 1 0.01
116 44 0.39
117 3 0.03
118 2 0.02
ACGTcount: A:0.31, C:0.21, G:0.20, T:0.29
Consensus pattern (111 bp):
AAAACAATGCGTTTTGGTTAAGATATTTTGCGGCGCTATCTACAAACACCGCTAAGACTCTTTAG
CGGCGCATATCAAAAGCGCCACTAATTCTAGGATACATCAACACCA
Found at i:27404436 original size:112 final size:113
Alignment explanation
Indices: 27404281--27404531 Score: 301
Period size: 112 Copynumber: 2.2 Consensus size: 113
27404271 GCATATCACA
* * * **
27404281 AAGCGCCACTAAATT-TAGGATACGTCAACACCAAAAACGATGCGTTTTGGTTA-AGATATTTTG
1 AAGCGCCACT-AATTCTAGGATACATCAACACCAAAAACAATGCGTTTTGGTTAGAGAAATTACG
* * *
27404344 TGGCGCATATCGTAAAACACCGCTAAGACTCTTTCGCGGCGT-TTTTTAG
65 TCGCG-ATATCGTAAAACACCGCTAAGACACTTTAGCGGCGTGTTTTTAG
*
27404393 AAGCGCCACTAATTCTAGGATACATCAACACTAAAAACAATGCGTTTTGGTTAGGAGAAATTACG
1 AAGCGCCACTAATTCTAGGATACATCAACACCAAAAACAATGCGTTTTGGTTA-GAGAAATTACG
* * * * *
27404458 TCGCGTTGTTGTAAAACGCCGCTAAGACACTTTAGCGGCGTGTTTTTTG
65 TCGCGATATCGTAAAACACCGCTAAGACACTTTAGCGGCGTGTTTTTAG
* * *
27404507 AAGCACCACTAATTCTTGCATACAT
1 AAGCGCCACTAATTCTAGGATACAT
27404532 AAAGACGAAA
Statistics
Matches: 118, Mismatches: 17, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
111 4 0.03
112 45 0.38
113 30 0.25
114 39 0.33
ACGTcount: A:0.30, C:0.21, G:0.20, T:0.29
Consensus pattern (113 bp):
AAGCGCCACTAATTCTAGGATACATCAACACCAAAAACAATGCGTTTTGGTTAGAGAAATTACGT
CGCGATATCGTAAAACACCGCTAAGACACTTTAGCGGCGTGTTTTTAG
Found at i:27404543 original size:113 final size:113
Alignment explanation
Indices: 27404355--27404594 Score: 295
Period size: 113 Copynumber: 2.1 Consensus size: 113
27404345 GGCGCATATC
* * * * * *
27404355 GTAAAACACCGCTAAGACTCTTTCGCGGCGTTTTTTAGAAGCGCCACTAATTCTAGGATACATCA
1 GTAAAACGCCGCTAAGACACTTTAGCGGCGTTTTTTAGAAGCACCACTAATTCTAGCATACATAA
* * * *
27404420 ACACTAAAAACAATGCGTTTTGGTTAGGAGAAATTACGTCGCGTTGTT
66 ACACTAAAAACAATGCATTTTGGATAGGAGAAATTACGGCGCGTGGTT
* *
27404468 GTAAAACGCCGCTAAGACACTTTAGCGGCGTGTTTTTTGAAGCACCACTAATTCTTGCATACATA
1 GTAAAACGCCGCTAAGACACTTTAGCGGCGT-TTTTTAGAAGCACCACTAATTCTAGCATACATA
* * ** **
27404533 AAGAC-GAAAACGTTGCATTTTGGATAGGAGATTTTACGGCGCGTGGTT
65 AACACTAAAAACAATGCATTTTGGATAGGAGAAATTACGGCGCGTGGTT
27404581 GT-AAACGCCGCTAA
1 GTAAAACGCCGCTAA
27404595 TGATGTTCTT
Statistics
Matches: 108, Mismatches: 18, Indels: 3
0.84 0.14 0.02
Matches are distributed among these distances:
112 12 0.11
113 64 0.59
114 32 0.30
ACGTcount: A:0.30, C:0.20, G:0.22, T:0.28
Consensus pattern (113 bp):
GTAAAACGCCGCTAAGACACTTTAGCGGCGTTTTTTAGAAGCACCACTAATTCTAGCATACATAA
ACACTAAAAACAATGCATTTTGGATAGGAGAAATTACGGCGCGTGGTT
Found at i:27410665 original size:6 final size:6
Alignment explanation
Indices: 27410650--27410802 Score: 83
Period size: 6 Copynumber: 24.3 Consensus size: 6
27410640 CAGACAAAAC
** *
27410650 AATAACA AATAAA AAT-AA AATAAA ACATATAA GTCTGAAA AATAAA ATTAAAA
1 AATAA-A AATAAA AATAAA AATAAA A-ATA-AA -AAT-AAA AATAAA AAT-AAA
* * * * * * *
27410703 AATAAC AAGAAA AATATA AATATA AATATA AAGAAA AATAAA ATTAAAAA
1 AATAAA AATAAA AATAAA AATAAA AATAAA AATAAA AATAAA A--ATAAA
* * * * * *
27410753 AATAAC AAGAAA AATAAA AATATA AATAGA AAGAAA AATAAA AACAAA
1 AATAAA AATAAA AATAAA AATAAA AATAAA AATAAA AATAAA AATAAA
27410801 AA
1 AA
27410803 CATAAAACTA
Statistics
Matches: 112, Mismatches: 26, Indels: 17
0.72 0.17 0.11
Matches are distributed among these distances:
5 5 0.04
6 82 0.73
7 14 0.12
8 10 0.09
9 1 0.01
ACGTcount: A:0.74, C:0.04, G:0.05, T:0.18
Consensus pattern (6 bp):
AATAAA
Found at i:27410774 original size:50 final size:49
Alignment explanation
Indices: 27410686--27410795 Score: 193
Period size: 50 Copynumber: 2.2 Consensus size: 49
27410676 ATATAAGTCT
* *
27410686 GAAAAATAAAATTAAAAAATAACAAGAAAAATATAAATATAAATATAAA
1 GAAAAATAAAATTAAAAAATAACAAGAAAAATAAAAATATAAATAGAAA
27410735 GAAAAATAAAATTAAAAAAATAACAAGAAAAATAAAAATATAAATAGAAA
1 GAAAAATAAAATT-AAAAAATAACAAGAAAAATAAAAATATAAATAGAAA
27410785 GAAAAATAAAA
1 GAAAAATAAAA
27410796 ACAAAAACAT
Statistics
Matches: 58, Mismatches: 2, Indels: 1
0.95 0.03 0.02
Matches are distributed among these distances:
49 13 0.22
50 45 0.78
ACGTcount: A:0.75, C:0.02, G:0.05, T:0.17
Consensus pattern (49 bp):
GAAAAATAAAATTAAAAAATAACAAGAAAAATAAAAATATAAATAGAAA
Found at i:27410801 original size:12 final size:12
Alignment explanation
Indices: 27410686--27410802 Score: 92
Period size: 12 Copynumber: 9.5 Consensus size: 12
27410676 ATATAAGTCT
27410686 GAAAAATAAAATTA
1 GAAAAATAAAA--A
*
27410700 -AAAAATAACAA
1 GAAAAATAAAAA
*
27410711 GAAAAATATAAA
1 GAAAAATAAAAA
* * *
27410723 TATAAATATAAA
1 GAAAAATAAAAA
27410735 GAAAAATAAAATTA
1 GAAAAATAAAA--A
* *
27410749 AAAAAATAACAA
1 GAAAAATAAAAA
27410761 GAAAAATAAAAA
1 GAAAAATAAAAA
* * *
27410773 TATAAATAGAAA
1 GAAAAATAAAAA
27410785 GAAAAATAAAAA
1 GAAAAATAAAAA
*
27410797 CAAAAA
1 GAAAAA
27410803 CATAAAACTA
Statistics
Matches: 81, Mismatches: 19, Indels: 8
0.75 0.18 0.07
Matches are distributed among these distances:
11 1 0.01
12 61 0.75
13 9 0.11
14 10 0.12
ACGTcount: A:0.76, C:0.03, G:0.05, T:0.16
Consensus pattern (12 bp):
GAAAAATAAAAA
Found at i:27411284 original size:16 final size:17
Alignment explanation
Indices: 27411263--27411294 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
27411253 ACCTTAGACT
27411263 ATTTTTTT-AATTTTTA
1 ATTTTTTTAAATTTTTA
27411279 ATTTTTTTAAATTTTT
1 ATTTTTTTAAATTTTT
27411295 CTTAAATTGT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 8 0.53
17 7 0.47
ACGTcount: A:0.25, C:0.00, G:0.00, T:0.75
Consensus pattern (17 bp):
ATTTTTTTAAATTTTTA
Found at i:27411299 original size:11 final size:10
Alignment explanation
Indices: 27411273--27411317 Score: 56
Period size: 11 Copynumber: 4.4 Consensus size: 10
27411263 ATTTTTTTAA
27411273 TTTTT-AATT
1 TTTTTAAATT
27411282 TTTTTAAATT
1 TTTTTAAATT
27411292 TTTCTTAAATT
1 TTT-TTAAATT
*
27411303 GTTTTTCAATT
1 -TTTTTAAATT
27411314 TTTT
1 TTTT
27411318 AATTATTTAA
Statistics
Matches: 32, Mismatches: 1, Indels: 5
0.84 0.03 0.13
Matches are distributed among these distances:
9 5 0.16
10 11 0.34
11 13 0.41
12 3 0.09
ACGTcount: A:0.22, C:0.04, G:0.02, T:0.71
Consensus pattern (10 bp):
TTTTTAAATT
Found at i:27437178 original size:107 final size:107
Alignment explanation
Indices: 27436985--27437239 Score: 307
Period size: 107 Copynumber: 2.4 Consensus size: 107
27436975 ACCCCTAAAT
* * *
27436985 GGTAAAATGACTGAAATACCCCCGAAAGGGTAAAATAACCGAAATACCCCTAAAGGGTAAAATAA
1 GGTAAAATGACTGAAATA-CCCC-AAAGGGTAAAATGACTGAAATACCCCTAAAGGATAAAATAA
* * * * *
27437050 TTGAAATACCCCTAAATGGTAAAATAACCGAAGTACCTCCAAAG
64 TCGAAATACCCCCAAAGGGTAAAATAACCGAAATACCTCCAAAC
* * * * *
27437094 GGTAAAATGACTGTAATACCCTCAAAGGGT-AAATGACTGAAATA-CTCTCAAAGGATAGACTGA
1 GGTAAAATGACTGAAATACCC-CAAAGGGTAAAATGACTGAAATACCCCT-AAAGGATAAAATAA
* *
27437157 TCGAAATACCCCCAAAGGGTAAAATGACTGAAATACCTCCAAAC
64 TCGAAATACCCCCAAAGGGTAAAATAACCGAAATACCTCCAAAC
* *
27437201 GGTAAAATGACTAAAATACCCCATAGGGTAAAATGACTG
1 GGTAAAATGACTGAAATACCCCAAAGGGTAAAATGACTG
27437240 TTATACCCAT
Statistics
Matches: 125, Mismatches: 18, Indels: 8
0.83 0.12 0.05
Matches are distributed among these distances:
106 10 0.08
107 87 0.70
108 10 0.08
109 18 0.14
ACGTcount: A:0.44, C:0.20, G:0.18, T:0.19
Consensus pattern (107 bp):
GGTAAAATGACTGAAATACCCCAAAGGGTAAAATGACTGAAATACCCCTAAAGGATAAAATAATC
GAAATACCCCCAAAGGGTAAAATAACCGAAATACCTCCAAAC
Found at i:27437247 original size:26 final size:26
Alignment explanation
Indices: 27436974--27437239 Score: 266
Period size: 27 Copynumber: 9.9 Consensus size: 26
27436964 TAACCCGACT
*
27436974 TACCCCTAAATGGTAAAATGACTGAAA
1 TACCCC-AAAGGGTAAAATGACTGAAA
* *
27437001 TACCCCCGAAAGGGTAAAATAACCGAAA
1 TA-CCCC-AAAGGGTAAAATGACTGAAA
* *
27437029 TACCCCTAAAGGGTAAAATAATTGAAA
1 TACCCC-AAAGGGTAAAATGACTGAAA
* * * *
27437056 TACCCCTAAATGGTAAAATAACCGAAG
1 TACCCC-AAAGGGTAAAATGACTGAAA
*
27437083 TACCTCCAAAGGGTAAAATGACTGTAA
1 TACC-CCAAAGGGTAAAATGACTGAAA
27437110 TACCCTCAAAGGGT-AAATGACTGAAA
1 TACCC-CAAAGGGTAAAATGACTGAAA
* * * *
27437136 TACTCTCAAAGGATAGACTGA-TCGAAA
1 TAC-CCCAAAGGGTAAAATGACT-GAAA
27437163 TACCCCCAAAGGGTAAAATGACTGAAA
1 TA-CCCCAAAGGGTAAAATGACTGAAA
* *
27437190 TACCTCCAAACGGTAAAATGACTAAAA
1 TACC-CCAAAGGGTAAAATGACTGAAA
*
27437217 TACCCCATAGGGTAAAATGACTG
1 TACCCCAAAGGGTAAAATGACTG
27437240 TTATACCCAT
Statistics
Matches: 200, Mismatches: 30, Indels: 19
0.80 0.12 0.08
Matches are distributed among these distances:
26 41 0.20
27 132 0.66
28 27 0.14
ACGTcount: A:0.44, C:0.20, G:0.17, T:0.19
Consensus pattern (26 bp):
TACCCCAAAGGGTAAAATGACTGAAA
Found at i:27444080 original size:19 final size:19
Alignment explanation
Indices: 27444042--27444095 Score: 81
Period size: 19 Copynumber: 2.8 Consensus size: 19
27444032 TTCTGTTGCT
* *
27444042 GTAAGTGTTTTTGGCTATCG
1 GTAAGTGTTTAT-ACTATCG
27444062 GTAAGTGTTTATACTATCG
1 GTAAGTGTTTATACTATCG
27444081 GTAAGTGTTTATACT
1 GTAAGTGTTTATACT
27444096 TCGCACTTAA
Statistics
Matches: 32, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
19 21 0.66
20 11 0.34
ACGTcount: A:0.22, C:0.09, G:0.24, T:0.44
Consensus pattern (19 bp):
GTAAGTGTTTATACTATCG
Found at i:27444570 original size:27 final size:28
Alignment explanation
Indices: 27444528--27444606 Score: 101
Period size: 27 Copynumber: 2.9 Consensus size: 28
27444518 CTTACGCCCG
27444528 AAGGGT-AAAATGATCGAAATACCCCCA
1 AAGGGTAAAAATGATCGAAATACCCCCA
* *
27444555 AAGGGTAAAAAT-ATCGGAATACCCCTA
1 AAGGGTAAAAATGATCGAAATACCCCCA
* *
27444582 AAGGGT-AAAATGATTGAAATGCCCC
1 AAGGGTAAAAATGATCGAAATACCCC
27444607 ATAGGTAAAA
Statistics
Matches: 45, Mismatches: 5, Indels: 4
0.83 0.09 0.07
Matches are distributed among these distances:
26 5 0.11
27 35 0.78
28 5 0.11
ACGTcount: A:0.43, C:0.19, G:0.20, T:0.18
Consensus pattern (28 bp):
AAGGGTAAAAATGATCGAAATACCCCCA
Found at i:27445018 original size:28 final size:28
Alignment explanation
Indices: 27444956--27445019 Score: 92
Period size: 28 Copynumber: 2.3 Consensus size: 28
27444946 GTTGCGTTAT
* * * *
27444956 CACACTATTATTATATTGGGCTAAGGCC
1 CACACTGTTACTATATCGGGATAAGGCC
27444984 CACACTGTTACTATATCGGGATAAGGCC
1 CACACTGTTACTATATCGGGATAAGGCC
27445012 CACACTGT
1 CACACTGT
27445020 ACTGTTACTG
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 32 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (28 bp):
CACACTGTTACTATATCGGGATAAGGCC
Found at i:27453769 original size:22 final size:22
Alignment explanation
Indices: 27453742--27453784 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
27453732 AGTGATATAA
27453742 GGTGGTGCCAAGGTGGTGATAC
1 GGTGGTGCCAAGGTGGTGATAC
** *
27453764 GGTGGTGTTAGGGTGGTGATA
1 GGTGGTGCCAAGGTGGTGATA
27453785 TGTTGGTTTG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.16, C:0.07, G:0.49, T:0.28
Consensus pattern (22 bp):
GGTGGTGCCAAGGTGGTGATAC
Found at i:27457864 original size:48 final size:47
Alignment explanation
Indices: 27457796--27457887 Score: 121
Period size: 48 Copynumber: 1.9 Consensus size: 47
27457786 AATACACCAT
* *
27457796 TTGTGGATAAGCTACCACATAAATGATGATAACCAACCACATAATACA
1 TTGTGGACAAGCCACCACATAAATGATGATAA-CAACCACATAATACA
* * * *
27457844 TTGTGGACAAGCCACTACATAATTGTTGATAACGACCACATAAT
1 TTGTGGACAAGCCACCACATAAATGATGATAACAACCACATAAT
27457888 CCCAAATAAA
Statistics
Matches: 38, Mismatches: 6, Indels: 1
0.84 0.13 0.02
Matches are distributed among these distances:
47 11 0.29
48 27 0.71
ACGTcount: A:0.40, C:0.21, G:0.14, T:0.25
Consensus pattern (47 bp):
TTGTGGACAAGCCACCACATAAATGATGATAACAACCACATAATACA
Found at i:27460198 original size:17 final size:17
Alignment explanation
Indices: 27460176--27460212 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 17
27460166 CATTAAAACC
*
27460176 CTTCTTGAAATTTCAAA
1 CTTCTTGAAATTTAAAA
*
27460193 CTTCTTGACATTTAAAA
1 CTTCTTGAAATTTAAAA
27460210 CTT
1 CTT
27460213 GTATAAAACC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.32, C:0.19, G:0.05, T:0.43
Consensus pattern (17 bp):
CTTCTTGAAATTTAAAA
Found at i:27468817 original size:16 final size:16
Alignment explanation
Indices: 27468796--27468828 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
27468786 CATTACCAAA
27468796 TCATGAA-TAATAGATT
1 TCATGAACTAATA-ATT
27468812 TCATGAACTAATAATT
1 TCATGAACTAATAATT
27468828 T
1 T
27468829 TAGGAACACT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 11 0.69
17 5 0.31
ACGTcount: A:0.42, C:0.09, G:0.09, T:0.39
Consensus pattern (16 bp):
TCATGAACTAATAATT
Found at i:27475062 original size:22 final size:21
Alignment explanation
Indices: 27475037--27475081 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
27475027 AACACACCAT
*
27475037 TTATGGATAAGCCACCACATAA
1 TTATCGATAA-CCACCACATAA
*
27475059 TTATCGATAACGACCACATAA
1 TTATCGATAACCACCACATAA
27475080 TT
1 TT
27475082 GCAGATAAAC
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 12 0.57
22 9 0.43
ACGTcount: A:0.40, C:0.22, G:0.11, T:0.27
Consensus pattern (21 bp):
TTATCGATAACCACCACATAA
Found at i:27475088 original size:21 final size:21
Alignment explanation
Indices: 27475050--27475089 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
27475040 TGGATAAGCC
*
27475050 ACCACATAATTATCGATAACG
1 ACCACATAATTAGCGATAACG
27475071 ACCACATAATT-GCAGATAA
1 ACCACATAATTAGC-GATAA
27475090 ACTGCCACAT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 1 0.06
21 16 0.94
ACGTcount: A:0.45, C:0.23, G:0.10, T:0.23
Consensus pattern (21 bp):
ACCACATAATTAGCGATAACG
Found at i:27482958 original size:14 final size:14
Alignment explanation
Indices: 27482939--27482966 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
27482929 AATGTGTGAA
27482939 ACAAAAAGAGAATT
1 ACAAAAAGAGAATT
27482953 ACAAAAAGAGAATT
1 ACAAAAAGAGAATT
27482967 GGTACAAGTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.64, C:0.07, G:0.14, T:0.14
Consensus pattern (14 bp):
ACAAAAAGAGAATT
Found at i:27504844 original size:16 final size:16
Alignment explanation
Indices: 27504820--27504863 Score: 54
Period size: 17 Copynumber: 2.8 Consensus size: 16
27504810 AGTATGATGT
*
27504820 AAATAATAACTACTAG
1 AAATCATAACTACTAG
*
27504836 AAATCATAAATTACTAG
1 AAATCAT-AACTACTAG
27504853 AAATCA-AACTA
1 AAATCATAACTA
27504864 GAAATCATAA
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
15 4 0.17
16 6 0.25
17 14 0.58
ACGTcount: A:0.57, C:0.14, G:0.05, T:0.25
Consensus pattern (16 bp):
AAATCATAACTACTAG
Found at i:27510630 original size:41 final size:42
Alignment explanation
Indices: 27510573--27510671 Score: 128
Period size: 42 Copynumber: 2.4 Consensus size: 42
27510563 AATGGCCCTG
* * *
27510573 CTCACACGAGCTGTGGGTCGGCATGT-AGCTGCACGATGCTA
1 CTCACACGAGCTGTGGGTCAGAATGTAAGCTACACGATGCTA
* *
27510614 CTCACACGAGCTGTGGGTTAGAATGTAAGCTACACGATGCTG
1 CTCACACGAGCTGTGGGTCAGAATGTAAGCTACACGATGCTA
* *
27510656 TTTACACGAGCTGTGG
1 CTCACACGAGCTGTGG
27510672 AGAATTCACA
Statistics
Matches: 50, Mismatches: 7, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
41 23 0.46
42 27 0.54
ACGTcount: A:0.22, C:0.23, G:0.30, T:0.24
Consensus pattern (42 bp):
CTCACACGAGCTGTGGGTCAGAATGTAAGCTACACGATGCTA
Found at i:27514483 original size:26 final size:27
Alignment explanation
Indices: 27514454--27514504 Score: 86
Period size: 26 Copynumber: 1.9 Consensus size: 27
27514444 GACCGTAATG
27514454 CCCCTAGAGGGTAAATGACT-ATTTTT
1 CCCCTAGAGGGTAAATGACTGATTTTT
*
27514480 CCCCTCGAGGGTAAATGACTGATTT
1 CCCCTAGAGGGTAAATGACTGATTT
27514505 GTGCTATGGT
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
26 19 0.83
27 4 0.17
ACGTcount: A:0.25, C:0.22, G:0.22, T:0.31
Consensus pattern (27 bp):
CCCCTAGAGGGTAAATGACTGATTTTT
Found at i:27520277 original size:17 final size:17
Alignment explanation
Indices: 27520255--27520289 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
27520245 CATAGATATT
27520255 AACTAACACAAAAATAA
1 AACTAACACAAAAATAA
**
27520272 AACTAATGCAAAAATAA
1 AACTAACACAAAAATAA
27520289 A
1 A
27520290 TACATAAAGT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.69, C:0.14, G:0.03, T:0.14
Consensus pattern (17 bp):
AACTAACACAAAAATAA
Found at i:27524127 original size:10 final size:10
Alignment explanation
Indices: 27524114--27524138 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
27524104 TGTTCCTCCC
27524114 TTTTCTTCTA
1 TTTTCTTCTA
27524124 TTTTCTTCTA
1 TTTTCTTCTA
27524134 TTTTC
1 TTTTC
27524139 ACCACCCATT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.08, C:0.20, G:0.00, T:0.72
Consensus pattern (10 bp):
TTTTCTTCTA
Found at i:27528611 original size:27 final size:27
Alignment explanation
Indices: 27528570--27528683 Score: 129
Period size: 27 Copynumber: 4.0 Consensus size: 27
27528560 ATTGAATATA
27528570 AAGGGGTTTGCTAAGTGCTGATTCCCCC
1 AAGGGG-TTGCTAAGTGCTGATTCCCCC
* *
27528598 AAGGGGTTGCTAAGTGTTGATTCCCTGATTC
1 AAGGGGTTGCTAAGTGCTGATTCCC----CC
* *
27528629 ATTGATGGTTGCTAAGTGCTGATTCCCCC
1 A-AG-GGGTTGCTAAGTGCTGATTCCCCC
27528658 AAGGGGTTGCTAAGTGCTGATTCCCC
1 AAGGGGTTGCTAAGTGCTGATTCCCC
27528684 GAATCATTGG
Statistics
Matches: 72, Mismatches: 8, Indels: 13
0.77 0.09 0.14
Matches are distributed among these distances:
27 40 0.56
28 7 0.10
29 2 0.03
31 2 0.03
32 1 0.01
33 20 0.28
ACGTcount: A:0.18, C:0.22, G:0.28, T:0.32
Consensus pattern (27 bp):
AAGGGGTTGCTAAGTGCTGATTCCCCC
Found at i:27528641 original size:33 final size:33
Alignment explanation
Indices: 27528602--27528789 Score: 129
Period size: 33 Copynumber: 5.6 Consensus size: 33
27528592 TCCCCCAAGG
* *
27528602 GGTTGCTAAGTGTTGATTCCCTGATTCATTGAT
1 GGTTGCTAAGTGCTGATTCCCCGATTCATTGAT
* *
27528635 GGTTGCTAAGTGCTGATTCCCC----CA-AG-G
1 GGTTGCTAAGTGCTGATTCCCCGATTCATTGAT
* *
27528662 GGTTGCTAAGTGCTGATTCCCCGAATCATTGGT
1 GGTTGCTAAGTGCTGATTCCCCGATTCATTGAT
* * *
27528695 GGTTGCTAAATGCTGA-TCCCATCGTATCTTAAATGTGAAAGG
1 GGTTGCTAAGTGCTGATTCCC--CG-A--TT-CAT-TG--A-T
* *
27528737 GGTTGCTAAGTGTTGATTCCCCGATTCATTGGT
1 GGTTGCTAAGTGCTGATTCCCCGATTCATTGAT
*
27528770 GGTTGCTAAGTGTTGATTCC
1 GGTTGCTAAGTGCTGATTCC
27528790 ACCGTATTTT
Statistics
Matches: 122, Mismatches: 16, Indels: 34
0.71 0.09 0.20
Matches are distributed among these distances:
27 22 0.18
28 1 0.01
29 2 0.02
31 2 0.02
32 5 0.04
33 55 0.45
34 2 0.02
35 1 0.01
36 2 0.02
37 3 0.02
38 4 0.03
39 2 0.02
40 1 0.01
41 2 0.02
42 14 0.11
43 4 0.03
ACGTcount: A:0.20, C:0.19, G:0.27, T:0.35
Consensus pattern (33 bp):
GGTTGCTAAGTGCTGATTCCCCGATTCATTGAT
Found at i:27528670 original size:60 final size:60
Alignment explanation
Indices: 27528577--27528711 Score: 225
Period size: 60 Copynumber: 2.2 Consensus size: 60
27528567 ATAAAGGGGT
* * *
27528577 TTGCTAAGTGCTGATTCCCCCAAGGGGTTGCTAAGTGTTGATTCCCTGATTCATTGATGG
1 TTGCTAAGTGCTGATTCCCCCAAGGGGTTGCTAAGTGCTGATTCCCCGAATCATTGATGG
*
27528637 TTGCTAAGTGCTGATTCCCCCAAGGGGTTGCTAAGTGCTGATTCCCCGAATCATTGGTGG
1 TTGCTAAGTGCTGATTCCCCCAAGGGGTTGCTAAGTGCTGATTCCCCGAATCATTGATGG
*
27528697 TTGCTAAATGCTGAT
1 TTGCTAAGTGCTGAT
27528712 CCCATCGTAT
Statistics
Matches: 70, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
60 70 1.00
ACGTcount: A:0.19, C:0.21, G:0.27, T:0.33
Consensus pattern (60 bp):
TTGCTAAGTGCTGATTCCCCCAAGGGGTTGCTAAGTGCTGATTCCCCGAATCATTGATGG
Found at i:27528796 original size:75 final size:77
Alignment explanation
Indices: 27528658--27528859 Score: 309
Period size: 75 Copynumber: 2.6 Consensus size: 77
27528648 TGATTCCCCC
* *
27528658 AAGGGGTTGCTAAGTGCTGATTCCCCGAATCATTGGTGGTTGCTAAATGCTGATCCCATCGTA-T
1 AAGGGGTTGCTAAGTGCTGATTCCCCGAATCATTGGTGGTTGCTAAGTGCTGATCCCACCGTATT
27528722 CTTAAATGTG-A
66 CTTAAATGTGAA
* * * *
27528733 AAGGGGTTGCTAAGTGTTGATTCCCCGATTCATTGGTGGTTGCTAAGTGTTGATTCCACCGTATT
1 AAGGGGTTGCTAAGTGCTGATTCCCCGAATCATTGGTGGTTGCTAAGTGCTGATCCCACCGTATT
* *
27528798 TTTGAATGTGAA
66 CTTAAATGTGAA
*
27528810 AAGGGGTTGCTAAGTGCTGATCCCCCGAATCATTGGTGGTTGCTAAGTGC
1 AAGGGGTTGCTAAGTGCTGATTCCCCGAATCATTGGTGGTTGCTAAGTGC
27528860 GGAATCCACC
Statistics
Matches: 113, Mismatches: 12, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
75 57 0.50
76 9 0.08
77 47 0.42
ACGTcount: A:0.22, C:0.17, G:0.28, T:0.33
Consensus pattern (77 bp):
AAGGGGTTGCTAAGTGCTGATTCCCCGAATCATTGGTGGTTGCTAAGTGCTGATCCCACCGTATT
CTTAAATGTGAA
Found at i:27528868 original size:77 final size:75
Alignment explanation
Indices: 27528658--27528870 Score: 302
Period size: 77 Copynumber: 2.8 Consensus size: 75
27528648 TGATTCCCCC
* *
27528658 AAGGGGTTGCTAAGTGCTGATTCCCCGAATCATTGGTGGTTGCTAAATGCTG-ATCCCATCGTAT
1 AAGGGGTTGCTAAGTGCTGATTCCCCGAATCATTGGTGGTTGCTAAGTGCTGAAT-CCACCGTAT
27528722 CTTAAATGTGA
65 CTTAAATGTGA
* * * *
27528733 AAGGGGTTGCTAAGTGTTGATTCCCCGATTCATTGGTGGTTGCTAAGTGTTGATTCCACCGTATT
1 AAGGGGTTGCTAAGTGCTGATTCCCCGAATCATTGGTGGTTGCTAAGTGCTGAATCCACCGTA-T
* *
27528798 TTTGAATGTGAA
65 CTTAAATGTG-A
* *
27528810 AAGGGGTTGCTAAGTGCTGATCCCCCGAATCATTGGTGGTTGCTAAGTGCGGAATCCACCG
1 AAGGGGTTGCTAAGTGCTGATTCCCCGAATCATTGGTGGTTGCTAAGTGCTGAATCCACCG
27528871 ATAACGGATA
Statistics
Matches: 121, Mismatches: 14, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
75 55 0.45
76 10 0.08
77 56 0.46
ACGTcount: A:0.22, C:0.18, G:0.28, T:0.32
Consensus pattern (75 bp):
AAGGGGTTGCTAAGTGCTGATTCCCCGAATCATTGGTGGTTGCTAAGTGCTGAATCCACCGTATC
TTAAATGTGA
Found at i:27543254 original size:70 final size:69
Alignment explanation
Indices: 27543142--27543286 Score: 245
Period size: 70 Copynumber: 2.1 Consensus size: 69
27543132 TATTATCTTC
27543142 AAGTAAGTTTTTTTATTTAAAAAACTTTATGAGCTAGATAATCAAAATAGAGACCCCAAATACGG
1 AAGTAAGTTTTTTTATTTAAAAAACTTTATGAGCTAGATAATCAAAATAGAGACCCCAAATACGG
27543207 AAGA
66 AAGA
* * * *
27543211 AAGTAAGTTTTTTTTATTTAAAAAACTTTGTGAGCTAGATAATCAAAATAGATACCCTAAATATG
1 AAGTAAG-TTTTTTTATTTAAAAAACTTTATGAGCTAGATAATCAAAATAGAGACCCCAAATACG
27543276 GAAGA
65 GAAGA
27543281 AAGTAA
1 AAGTAA
27543287 ATCAACACAC
Statistics
Matches: 71, Mismatches: 4, Indels: 1
0.93 0.05 0.01
Matches are distributed among these distances:
69 7 0.10
70 64 0.90
ACGTcount: A:0.45, C:0.10, G:0.14, T:0.31
Consensus pattern (69 bp):
AAGTAAGTTTTTTTATTTAAAAAACTTTATGAGCTAGATAATCAAAATAGAGACCCCAAATACGG
AAGA
Found at i:27547128 original size:20 final size:20
Alignment explanation
Indices: 27547086--27547128 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
27547076 CTAACGAAAG
** *
27547086 ATATACTATAAATATTAATA
1 ATATACTATAAATAGAAAAA
27547106 ATATACTATAAATAGAAAAA
1 ATATACTATAAATAGAAAAA
27547126 ATA
1 ATA
27547129 AATGCAAACG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.60, C:0.05, G:0.02, T:0.33
Consensus pattern (20 bp):
ATATACTATAAATAGAAAAA
Found at i:27565504 original size:16 final size:16
Alignment explanation
Indices: 27565483--27565514 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
27565473 GTTATCTTGC
*
27565483 TAATTTTACTTTTTCA
1 TAATTTCACTTTTTCA
27565499 TAATTTCACTTTTTCA
1 TAATTTCACTTTTTCA
27565515 CTTTCAATCA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.25, C:0.16, G:0.00, T:0.59
Consensus pattern (16 bp):
TAATTTCACTTTTTCA
Found at i:27565800 original size:51 final size:51
Alignment explanation
Indices: 27565738--27565882 Score: 186
Period size: 51 Copynumber: 2.8 Consensus size: 51
27565728 GATATCGGTT
*
27565738 CACATAGTAGCCTGCACATAGTACTACACATGTGACCATCACTATCCGATA
1 CACATAGTAGCCTGCACATAGTACTACACACGTGACCATCACTATCCGATA
* * * * * *
27565789 CACGTAGTAGCCTACACATAATACTACACACGTGATCGA--AGCTATCTGGTA
1 CACATAGTAGCCTGCACATAGTACTACACACGTGA-CCATCA-CTATCCGATA
*
27565840 CGCATAGTAGCCTGCACATAGTACTACACACGTGACCATCACT
1 CACATAGTAGCCTGCACATAGTACTACACACGTGACCATCACT
27565883 TTCACTTTCA
Statistics
Matches: 78, Mismatches: 12, Indels: 8
0.80 0.12 0.08
Matches are distributed among these distances:
50 3 0.04
51 72 0.92
52 3 0.04
ACGTcount: A:0.32, C:0.29, G:0.16, T:0.23
Consensus pattern (51 bp):
CACATAGTAGCCTGCACATAGTACTACACACGTGACCATCACTATCCGATA
Found at i:27568640 original size:50 final size:50
Alignment explanation
Indices: 27568586--27568692 Score: 151
Period size: 50 Copynumber: 2.1 Consensus size: 50
27568576 GCATGAGAGT
* *
27568586 TCTCATATCAGTGCCCATGCCATGTCCCAGACATGGTCTTACGGGGGACC
1 TCTCATATCAGTACCAATGCCATGTCCCAGACATGGTCTTACGGGGGACC
* * * * *
27568636 TCTCATCTCGGTACCAATGCCATGTCCCAGATATGGTCTTATGTGGGACC
1 TCTCATATCAGTACCAATGCCATGTCCCAGACATGGTCTTACGGGGGACC
27568686 TCTCATA
1 TCTCATA
27568693 ACCTCAATAA
Statistics
Matches: 49, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
50 49 1.00
ACGTcount: A:0.21, C:0.30, G:0.21, T:0.28
Consensus pattern (50 bp):
TCTCATATCAGTACCAATGCCATGTCCCAGACATGGTCTTACGGGGGACC
Found at i:27568711 original size:56 final size:52
Alignment explanation
Indices: 27568597--27568718 Score: 140
Period size: 50 Copynumber: 2.3 Consensus size: 52
27568587 CTCATATCAG
* **
27568597 TGCCCATGCCATGTCCCAGACATGGTCTTACGGGGGACCTCTCATCTCGGTA
1 TGCCAATGCCATGTCCCAGACATGGTCTTACGGGGGACCTCTCATCTCAATA
* * *
27568649 --CCAATGCCATGTCCCAGATATGGTCTTATGTGGGACCTCTCATAACCTCAATAA
1 TGCCAATGCCATGTCCCAGACATGGTCTTACGGGGGACCTCTCAT---CTCAAT-A
27568703 TGCCAATGCCATGTCC
1 TGCCAATGCCATGTCC
27568719 TATTTTTGTT
Statistics
Matches: 58, Mismatches: 6, Indels: 8
0.81 0.08 0.11
Matches are distributed among these distances:
50 39 0.67
53 4 0.07
54 1 0.02
56 14 0.24
ACGTcount: A:0.22, C:0.31, G:0.20, T:0.26
Consensus pattern (52 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACGGGGGACCTCTCATCTCAATA
Found at i:27575298 original size:50 final size:50
Alignment explanation
Indices: 27575228--27575366 Score: 163
Period size: 50 Copynumber: 2.8 Consensus size: 50
27575218 TACTACAAAT
* * * ** * * *
27575228 TCCATATCCCAGATATGGTCTTACATGGGAGTTCTCATATTGGTGCCCA-
1 TCCATGTCCCAGACATGGTCTTACGTGGGACCTCTCATATCGGTACCAAC
* *
27575277 TGCCATGTCCCAGACATGGTCTTACGGGGGACCTCTCATCTCGGTACCAAC
1 T-CCATGTCCCAGACATGGTCTTACGTGGGACCTCTCATATCGGTACCAAC
*
27575328 TCCATGTCCTAGACATGGTCTTACGTGGGACCTCTCATA
1 TCCATGTCCCAGACATGGTCTTACGTGGGACCTCTCATA
27575367 ACCTCAATAA
Statistics
Matches: 75, Mismatches: 13, Indels: 3
0.82 0.14 0.03
Matches are distributed among these distances:
49 1 0.01
50 73 0.97
51 1 0.01
ACGTcount: A:0.21, C:0.29, G:0.22, T:0.29
Consensus pattern (50 bp):
TCCATGTCCCAGACATGGTCTTACGTGGGACCTCTCATATCGGTACCAAC
Found at i:27587713 original size:41 final size:41
Alignment explanation
Indices: 27587640--27587748 Score: 130
Period size: 41 Copynumber: 2.7 Consensus size: 41
27587630 CCAAATGTGT
* * * * **
27587640 AAACAGGGGAACGTAAGTGCTATTT-GGAGTACCGTAGTAC
1 AAACAAGGGCACGTATGTGCAATTTAGGAGTACCAAAGTAC
* *
27587680 AAATAAGGGCACGTATGTGCAATTTAGGGGTACCAAAGTAC
1 AAACAAGGGCACGTATGTGCAATTTAGGAGTACCAAAGTAC
*
27587721 AAACAAGGGCATGTATGTGCAATTTAGG
1 AAACAAGGGCACGTATGTGCAATTTAGG
27587749 TATAATTAAC
Statistics
Matches: 58, Mismatches: 10, Indels: 1
0.84 0.14 0.01
Matches are distributed among these distances:
40 20 0.34
41 38 0.66
ACGTcount: A:0.35, C:0.14, G:0.28, T:0.23
Consensus pattern (41 bp):
AAACAAGGGCACGTATGTGCAATTTAGGAGTACCAAAGTAC
Found at i:27596201 original size:29 final size:29
Alignment explanation
Indices: 27596160--27596231 Score: 72
Period size: 29 Copynumber: 2.5 Consensus size: 29
27596150 ACTCACCTGT
* * *
27596160 CACACAGTTGTGTGTCACACACGATCGGG
1 CACACACTCGTGTGTCACACACGACCGGG
** *
27596189 CACACACTCGTGTGTTGCACACGGCCGGG
1 CACACACTCGTGTGTCACACACGACCGGG
* *
27596218 CACACGCCCGTGTG
1 CACACACTCGTGTG
27596232 GCGTCGATAG
Statistics
Matches: 35, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
29 35 1.00
ACGTcount: A:0.19, C:0.33, G:0.29, T:0.18
Consensus pattern (29 bp):
CACACACTCGTGTGTCACACACGACCGGG
Found at i:27596760 original size:5 final size:5
Alignment explanation
Indices: 27596750--27596795 Score: 62
Period size: 5 Copynumber: 9.6 Consensus size: 5
27596740 AGAAGAGGGA
27596750 AAAAG AAAAG AAAAG AAAAG AAAAG -AAAG AAAA- AGAAAG -AAAG AAA
1 AAAAG AAAAG AAAAG AAAAG AAAAG AAAAG AAAAG A-AAAG AAAAG AAA
27596796 GAAGGAAAAA
Statistics
Matches: 37, Mismatches: 0, Indels: 8
0.82 0.00 0.18
Matches are distributed among these distances:
4 9 0.24
5 28 0.76
ACGTcount: A:0.80, C:0.00, G:0.20, T:0.00
Consensus pattern (5 bp):
AAAAG
Found at i:27596768 original size:15 final size:14
Alignment explanation
Indices: 27596750--27596795 Score: 67
Period size: 14 Copynumber: 3.2 Consensus size: 14
27596740 AGAAGAGGGA
27596750 AAAAGAAAAGAAAAG
1 AAAAGAAAAG-AAAG
27596765 AAAAGAAAAGAAAG
1 AAAAGAAAAGAAAG
27596779 AAAA-AGAAAGAAAG
1 AAAAGA-AAAGAAAG
27596793 AAA
1 AAA
27596796 GAAGGAAAAA
Statistics
Matches: 30, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
13 1 0.03
14 19 0.63
15 10 0.33
ACGTcount: A:0.80, C:0.00, G:0.20, T:0.00
Consensus pattern (14 bp):
AAAAGAAAAGAAAG
Found at i:27603262 original size:32 final size:32
Alignment explanation
Indices: 27603212--27603290 Score: 95
Period size: 32 Copynumber: 2.4 Consensus size: 32
27603202 CCACATGCCT
* * *
27603212 GTGTAGGCCAACACGCCCAAATTGGCCTTGCTC
1 GTGT-GGCCCACACGCCCAAATTGACCTAGCTC
* *
27603245 GTGTGGCCCACATGCCCAACTTGACCTAGCTC
1 GTGTGGCCCACACGCCCAAATTGACCTAGCTC
*
27603277 GTGTAGCCCACACG
1 GTGTGGCCCACACG
27603291 ACCACAAACT
Statistics
Matches: 39, Mismatches: 7, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
32 35 0.90
33 4 0.10
ACGTcount: A:0.20, C:0.35, G:0.24, T:0.20
Consensus pattern (32 bp):
GTGTGGCCCACACGCCCAAATTGACCTAGCTC
Found at i:27603679 original size:20 final size:20
Alignment explanation
Indices: 27603656--27603695 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
27603646 GGAGAAGAGG
27603656 GAAAAAGAAAAGAA-AAAAAA
1 GAAAAAG-AAAGAAGAAAAAA
27603676 GAAAAAGAAAGAAGAAAAAA
1 GAAAAAGAAAGAAGAAAAAA
27603696 ATTTAAAATA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 6 0.32
20 13 0.68
ACGTcount: A:0.82, C:0.00, G:0.17, T:0.00
Consensus pattern (20 bp):
GAAAAAGAAAGAAGAAAAAA
Found at i:27603696 original size:15 final size:15
Alignment explanation
Indices: 27603657--27603685 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
27603647 GAGAAGAGGG
27603657 AAAAAG-AAAAGAAA
1 AAAAAGAAAAAGAAA
27603671 AAAAAGAAAAAGAAA
1 AAAAAGAAAAAGAAA
27603686 GAAGAAAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 6 0.43
15 8 0.57
ACGTcount: A:0.86, C:0.00, G:0.14, T:0.00
Consensus pattern (15 bp):
AAAAAGAAAAAGAAA
Found at i:27609389 original size:50 final size:50
Alignment explanation
Indices: 27609328--27609434 Score: 135
Period size: 50 Copynumber: 2.1 Consensus size: 50
27609318 ACATAGGAGT
* * * *
27609328 TCTCATATCGGTGCCCATGCTATGTCCCAGAC-CTGGTCTTACGGGGGACC
1 TCTCATATCGGTGCCAACGCCATGTCCCAGACAC-GGTCTTACAGGGGACC
* * *
27609378 TCTCATCTCGGTGCCAACGCCATGTCCCATACACGGTCTTACATGGGACC
1 TCTCATATCGGTGCCAACGCCATGTCCCAGACACGGTCTTACAGGGGACC
27609428 TCTCATA
1 TCTCATA
27609435 ATCTCAATGA
Statistics
Matches: 48, Mismatches: 8, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
50 47 0.98
51 1 0.02
ACGTcount: A:0.19, C:0.34, G:0.21, T:0.26
Consensus pattern (50 bp):
TCTCATATCGGTGCCAACGCCATGTCCCAGACACGGTCTTACAGGGGACC
Found at i:27613807 original size:28 final size:28
Alignment explanation
Indices: 27613771--27613845 Score: 78
Period size: 28 Copynumber: 2.7 Consensus size: 28
27613761 TAGATTGTTT
*
27613771 TGGCAGACTTCCACATTTAAGATCATAC
1 TGGCGGACTTCCACATTTAAGATCATAC
** * *
27613799 TGGCGGACTTCCATGTTTAAGATCGTCC
1 TGGCGGACTTCCACATTTAAGATCATAC
** *
27613827 TAACGAACTTCCACATTTA
1 TGGCGGACTTCCACATTTA
27613846 TGGTAATGCC
Statistics
Matches: 37, Mismatches: 10, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
28 37 1.00
ACGTcount: A:0.28, C:0.25, G:0.16, T:0.31
Consensus pattern (28 bp):
TGGCGGACTTCCACATTTAAGATCATAC
Found at i:27615340 original size:29 final size:31
Alignment explanation
Indices: 27615280--27615344 Score: 84
Period size: 29 Copynumber: 2.2 Consensus size: 31
27615270 GGCATTTCCC
27615280 ATTAAATATGATTAATGATTAAATTAGTTTA
1 ATTAAATATGATTAATGATTAAATTAGTTTA
27615311 ATTAAATCATGATT-ATG-TT-AATTA-TGTTA
1 ATTAAAT-ATGATTAATGATTAAATTAGT-TTA
27615340 ATTAA
1 ATTAA
27615345 GTTAAATTAA
Statistics
Matches: 32, Mismatches: 0, Indels: 6
0.84 0.00 0.16
Matches are distributed among these distances:
28 1 0.03
29 13 0.41
30 2 0.06
31 10 0.31
32 6 0.19
ACGTcount: A:0.43, C:0.02, G:0.09, T:0.46
Consensus pattern (31 bp):
ATTAAATATGATTAATGATTAAATTAGTTTA
Found at i:27618433 original size:72 final size:72
Alignment explanation
Indices: 27618347--27618512 Score: 316
Period size: 72 Copynumber: 2.3 Consensus size: 72
27618337 GATACCTAGG
27618347 TTAAGTATTGATACCGTATTTAGCTTTGGTGTTTTGAAAATCAAGTTAAAATACTCAAGTATCGA
1 TTAAGTATTGATACCGTATTTAGCTTTGGTGTTTTGAAAATCAAGTTAAAATACTCAAGTATCGA
27618412 AACCAAT
66 AACCAAT
27618419 TTAAGTATTGATACCGTATTTAGCTTTGGTGTTTTGAAAATCAAGTTAAAATACTCAAGTATCGA
1 TTAAGTATTGATACCGTATTTAGCTTTGGTGTTTTGAAAATCAAGTTAAAATACTCAAGTATCGA
27618484 AACCAAT
66 AACCAAT
*
27618491 TTAAGTATTAATACCGT-TTTAG
1 TTAAGTATTGATACCGTATTTAG
27618513 AATTTTTCAA
Statistics
Matches: 93, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
71 5 0.05
72 88 0.95
ACGTcount: A:0.36, C:0.12, G:0.15, T:0.37
Consensus pattern (72 bp):
TTAAGTATTGATACCGTATTTAGCTTTGGTGTTTTGAAAATCAAGTTAAAATACTCAAGTATCGA
AACCAAT
Found at i:27620686 original size:44 final size:44
Alignment explanation
Indices: 27620623--27620711 Score: 178
Period size: 44 Copynumber: 2.0 Consensus size: 44
27620613 TTTTTAGAAA
27620623 CATTAGTTTAACTCTCAATCCAGCCAAAATAGAACCATCACGTT
1 CATTAGTTTAACTCTCAATCCAGCCAAAATAGAACCATCACGTT
27620667 CATTAGTTTAACTCTCAATCCAGCCAAAATAGAACCATCACGTT
1 CATTAGTTTAACTCTCAATCCAGCCAAAATAGAACCATCACGTT
27620711 C
1 C
27620712 CAAAGTTAGT
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
44 45 1.00
ACGTcount: A:0.36, C:0.28, G:0.09, T:0.27
Consensus pattern (44 bp):
CATTAGTTTAACTCTCAATCCAGCCAAAATAGAACCATCACGTT
Found at i:27622898 original size:10 final size:10
Alignment explanation
Indices: 27622883--27622911 Score: 51
Period size: 9 Copynumber: 3.0 Consensus size: 10
27622873 ATTGTGTGTT
27622883 TGAATAGAAA
1 TGAATAGAAA
27622893 TGAATAG-AA
1 TGAATAGAAA
27622902 TGAATAGAAA
1 TGAATAGAAA
27622912 ATGAGAAATG
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
9 9 0.50
10 9 0.50
ACGTcount: A:0.59, C:0.00, G:0.21, T:0.21
Consensus pattern (10 bp):
TGAATAGAAA
Found at i:27626599 original size:28 final size:28
Alignment explanation
Indices: 27626554--27626666 Score: 90
Period size: 27 Copynumber: 4.1 Consensus size: 28
27626544 CATTACGATT
*
27626554 ATTTTA-CCTTACAG-GGGTACTTCGGTC
1 ATTTTACCCTT-CAGAGGGTATTTCGGTC
*
27626581 ATTTTACCCTTCAGAGGGTATTTTGGTC
1 ATTTTACCCTTCAGAGGGTATTTCGGTC
* * * *
27626609 AATATACCCATCA-AGGGTATTTCAGTC
1 ATTTTACCCTTCAGAGGGTATTTCGGTC
** * **
27626636 ATTTTTTCCATCA-AGGGTATTTTAGTC
1 ATTTTACCCTTCAGAGGGTATTTCGGTC
27626663 ATTT
1 ATTT
27626667 AACAACCTTT
Statistics
Matches: 72, Mismatches: 12, Indels: 4
0.82 0.14 0.05
Matches are distributed among these distances:
27 47 0.65
28 25 0.35
ACGTcount: A:0.23, C:0.19, G:0.18, T:0.41
Consensus pattern (28 bp):
ATTTTACCCTTCAGAGGGTATTTCGGTC
Found at i:27657443 original size:20 final size:20
Alignment explanation
Indices: 27657414--27657457 Score: 61
Period size: 20 Copynumber: 2.2 Consensus size: 20
27657404 ATATTATATT
* * *
27657414 AAAAGGGTGTTTTATGTTTA
1 AAAAGAGTGTTTTAGGGTTA
27657434 AAAAGAGTGTTTTAGGGTTA
1 AAAAGAGTGTTTTAGGGTTA
27657454 AAAA
1 AAAA
27657458 TTGGGTATAA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.39, C:0.00, G:0.25, T:0.36
Consensus pattern (20 bp):
AAAAGAGTGTTTTAGGGTTA
Found at i:27667845 original size:18 final size:19
Alignment explanation
Indices: 27667822--27667857 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
27667812 TCCCTTAATG
27667822 ATTAGATTCTCAA-AATCC
1 ATTAGATTCTCAATAATCC
*
27667840 ATTAGATTGTCAATAATC
1 ATTAGATTCTCAATAATC
27667858 GTAGCAGCTC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 12 0.75
19 4 0.25
ACGTcount: A:0.39, C:0.17, G:0.08, T:0.36
Consensus pattern (19 bp):
ATTAGATTCTCAATAATCC
Found at i:27673450 original size:17 final size:16
Alignment explanation
Indices: 27673411--27673460 Score: 64
Period size: 18 Copynumber: 2.9 Consensus size: 16
27673401 TCTTATTCCT
*
27673411 TCATTCAACATTCCTCAA
1 TCATTCATCATT-CTC-A
27673429 TCATTCATTCATTCTCA
1 TCATTCA-TCATTCTCA
27673446 TCATTCATCATTCTC
1 TCATTCATCATTCTC
27673461 TGTTTTCTCC
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
16 8 0.27
17 8 0.27
18 10 0.33
19 4 0.13
ACGTcount: A:0.26, C:0.32, G:0.00, T:0.42
Consensus pattern (16 bp):
TCATTCATCATTCTCA
Found at i:27688433 original size:18 final size:17
Alignment explanation
Indices: 27688406--27688439 Score: 59
Period size: 18 Copynumber: 1.9 Consensus size: 17
27688396 AGAAATAATA
27688406 AAATAAAATAATGAAAG
1 AAATAAAATAATGAAAG
27688423 AAATAAAAATAATGAAA
1 AAAT-AAAATAATGAAA
27688440 TCGAAAAATA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 4 0.25
18 12 0.75
ACGTcount: A:0.74, C:0.00, G:0.09, T:0.18
Consensus pattern (17 bp):
AAATAAAATAATGAAAG
Done.