Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold_841 ID=scaffold_841-JGI_221_v2.0

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5056
ACGTcount: A:0.22, C:0.11, G:0.11, T:0.20

Warning! 1818 characters in sequence are not A, C, G, or T


Found at i:1611 original size:26 final size:26

Alignment explanation


    Indices: 1582--1632  Score: 75
    Period size: 26  Copynumber: 2.0  Consensus size: 26

       1572 CAATAAAAGC

                           * *        
       1582 AAACATTCAATATTTTAGTTTAATTA
          1 AAACATTCAATATTTCAATTTAATTA

                       *             
       1608 AAACATTCAATGTTTCAATTTAATT
          1 AAACATTCAATATTTCAATTTAATT

       1633 TGCATTAATT


Statistics
Matches: 22,  Mismatches: 3, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
  26   22  1.00

ACGTcount: A:0.41, C:0.10, G:0.04, T:0.45


Consensus pattern (26 bp):   
AAACATTCAATATTTCAATTTAATTA
Done.