Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: scaffold_850 ID=scaffold_850-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 4593
ACGTcount: A:0.17, C:0.16, G:0.14, T:0.21
Warning! 1459 characters in sequence are not A, C, G, or T
Found at i:250 original size:132 final size:132
Alignment explanation
Indices: 2--1563 Score: 2125
Period size: 132 Copynumber: 11.7 Consensus size: 132
1 G
*
2 CTTAAATCTGCTTCCCACTATCTTGAAAAGATAAGATTTGTCGTCTTCGATCTGCTCCACTACTG
1 CTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGTCGTCTTCGATCTGCTCCACTACTG
* ** *
67 CTTAGGGAGATAAGATTTACAATTTTTGACCCACTCCGCTGCTGCTTAGGGAGACAATGCTTGGT
66 CTTAGGGAGATAAGATCTACAATTTTCAACCCACTCCGCTGCTGCTCAGGGAGACAATGCTTGGT
132 GA
131 GA
* * * *
134 CATAATTCTGCTTCCCACTATCTTGGAAATATAAGATTTGTCGTCTTCGATCAGCTCCACTACTG
1 CTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGTCGTCTTCGATCTGCTCCACTACTG
* * *
199 CTTAGGGAGGTAAGATCTACAATTTTCAACCCACTCCGCTCCTGCTCAGGGAGACAAGGCTTGGT
66 CTTAGGGAGATAAGATCTACAATTTTCAACCCACTCCGCTGCTGCTCAGGGAGACAATGCTTGGT
*
264 GG
131 GA
* *
266 CTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGACTTGTCTTCTTCGATCTGCTCCACTACTG
1 CTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGTCGTCTTCGATCTGCTCCACTACTG
331 CTTAGGGAGATAAGATCTACAATTTTCAACCCACTCCGCTGCTGCTCAGGGAGACAATGCTTGGT
66 CTTAGGGAGATAAGATCTACAATTTTCAACCCACTCCGCTGCTGCTCAGGGAGACAATGCTTGGT
396 GA
131 GA
* * *
398 CTTAAATCTGCTTCCCGCTATGTTGGAAAGATAAGATTTGTAGTCTTCGATCTGCTCCACTACCT
1 CTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGTCGTCTTCGATCTGCTCCACTA-CT
* *
463 CGCTTAGGGAGATAAGATCTACAATTTTCAACCCATTCCGCTGCAGCTCAGGGAGACAATGCTTG
65 -GCTTAGGGAGATAAGATCTACAATTTTCAACCCACTCCGCTGCTGCTCAGGGAGACAATGCTTG
528 GTGA
129 GTGA
* * ** *
532 CTTAAATCTGCTTCCCACTATCCTGGATAGAGCAGATTTGCCGTCTTCGATCTGCTCCACTACTG
1 CTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGTCGTCTTCGATCTGCTCCACTACTG
* *
597 CTTAGGGAGATAAGATCTACAATTTTC-GCCCACTCCGTTGCTGTAAGGGGCACAATGCTTAGGG
66 CTTAGGGAGATAAGATCTACAATTTTCAACCCACTCC---GC--T-----G--C--TGCTCAGGG
661 AGACAATGCTTGGTGA
117 AGACAATGCTTGGTGA
** * * * *
677 CTTAAATCTGCTTCCCACTAAGTTGGAAAGATAAAATTTGTCTTCTTCGATCTGTTCCACTAGTG
1 CTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGTCGTCTTCGATCTGCTCCACTACTG
*
742 CTTAGGGAGAGAAGATCTACAATTTTCAACCCACTCCGCTGCTGCTCAGGGAGACAA-GACTTGG
66 CTTAGGGAGATAAGATCTACAATTTTCAACCCACTCCGCTGCTGCTCAGGGAGACAATG-CTTGG
*
806 TGG
130 TGA
* *
809 CTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGACTTGCCGTCTTCGATCTGCTCCACTACTG
1 CTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGTCGTCTTCGATCTGCTCCACTACTG
*
874 CTTAGGGAGATAAGATCTACAATTTTCCAACTCACTCCGCTGCTGCTCAGGGAGACAATGCTTGG
66 CTTAGGGAGATAAGATCTACAATTTT-CAACCCACTCCGCTGCTGCTCAGGGAGACAATGCTTGG
939 TGA
130 TGA
* * *
942 CATAAATCTGCTTCCCACTATCTTGGAAATATAAGATTTGTCGTCTTCGATCTGCTCCACAACTG
1 CTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGTCGTCTTCGATCTGCTCCACTACTG
* *
1007 CTTAGGGATATAAGATCTACAATTTTCAACCCACTCCGCTGCTGCTCAGGGAGACAAGGCTTGGT
66 CTTAGGGAGATAAGATCTACAATTTTCAACCCACTCCGCTGCTGCTCAGGGAGACAATGCTTGGT
*
1072 GG
131 GA
* ** **
1074 CTTAAATCTGCTTCCCACTATCCTGGAAAGAGCAGATTTACCGTCTTCGATCTGCTCCACTACTG
1 CTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGTCGTCTTCGATCTGCTCCACTACTG
* * * * *
1139 CTTAGGGAGATAAGATCTACTATTTTCAACCCACTCTGTTGCTG-TAAGGGGGACAATGCTTGGT
66 CTTAGGGAGATAAGATCTACAATTTTCAACCCACTCCGCTGCTGCTCAGGGAGACAATGCTTGGT
1203 GA
131 GA
* * *
1205 CTTAAATCTGCTTCCCACTATGTTGGAAAGATAAG-TTTGCCGTCTTCGGTCTGCTCCACTACTG
1 CTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGTCGTCTTCGATCTGCTCCACTACTG
** * * *
1269 CTTAGGGAGATAAGATCTACAATTTTTCAACTTACTTCGCTTGCTGCTCACGGG-GACAAGGCTA
66 CTTAGGGAGATAAGATCTACAA-TTTTCAACCCACTCCGC-TGCTGCTCA-GGGAGACAATGCTT
*
1333 GGTGG
128 GGTGA
* * * * *
1338 CTTAAATTTGCTTTTCCC-CTATCTTTGGAAATATAAGATATGTCATCTTTCGATCAGCTCCACT
1 CTTAAATCTGC--TTCCCACTATC-TTGGAAAGATAAGATTTGTCGTC-TTCGATCTGCTCCACT
* * *
1402 ACTGCTTAGGAAGATAAGATCTATAATTTTTCAACCCATTCCGCTGCTGCTCAGGGAGACAATGC
62 ACTGCTTAGGGAGATAAGATCTACAA-TTTTCAACCCACTCCGCTGCTGCTCAGGGAGACAATGC
1467 TTGGTGA
126 TTGGTGA
* * * *
1474 CTT-AATCTGCTTCCCACTA-GTTGGAAAGATAAAATTTGTCTTCTTCGATCTGCTCCACTAGTG
1 CTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGTCGTCTTCGATCTGCTCCACTACTG
* * *
1537 CTTATGGAGA-GAGATCTACAAATTTCA
66 CTTAGGGAGATAAGATCTACAATTTTCA
1564 NNNNNNNNNN
Statistics
Matches: 1260, Mismatches: 139, Indels: 65
0.86 0.09 0.04
Matches are distributed among these distances:
129 5 0.00
130 57 0.05
131 95 0.08
132 588 0.47
133 155 0.12
134 134 0.11
135 26 0.02
136 32 0.03
137 52 0.04
141 2 0.00
143 3 0.00
145 103 0.08
146 8 0.01
ACGTcount: A:0.25, C:0.24, G:0.20, T:0.31
Consensus pattern (132 bp):
CTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGTCGTCTTCGATCTGCTCCACTACTG
CTTAGGGAGATAAGATCTACAATTTTCAACCCACTCCGCTGCTGCTCAGGGAGACAATGCTTGGT
GA
Found at i:1130 original size:265 final size:264
Alignment explanation
Indices: 1--1563 Score: 2179
Period size: 265 Copynumber: 5.9 Consensus size: 264
* *
1 GCTTAAATCTGCTTCCCACTATCTTGAAAAGATAAGATTTGTCGTCTTCGATCTGCTCCACTACT
1 GCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCGTCTTCGATCTGCTCCACTACT
* ** *
66 GCTTAGGGAGATAAGATTTACAATTTTTGACCCACTCCGCTGCTGCTTAGGGAGACAATGCTTGG
66 GCTTAGGGAGATAAGATCTACAATTTTCAACCCACTCCGCTGCTGCTCAGGGAGACAATGCTTGG
* * * * * *
131 TGACATAATTCTGCTTCCCACTATCTTGGAAATATAAGATTTGTCGTCTTCGATCAGCTCCACTA
131 TGACTTAAATCTGCTTCCCACTATGTTGGAAAGATAAAATTTGTCGTCTTCGATCTGCTCCACTA
* *
196 CTGCTTAGGGAGGTAAGATCTACAATTTTCAACCCACTCCGCTCCTGCTCAGGGAGACAAGGCTT
196 CTGCTTAGGGAGATAAGATCTACAATTTTCAACCCACTCCGCTGCTGCTCAGGGAGACAAGGCTT
261 GGTG
261 GGTG
* * *
265 GCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGACTTGTCTTCTTCGATCTGCTCCACTACT
1 GCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCGTCTTCGATCTGCTCCACTACT
330 GCTTAGGGAGATAAGATCTACAATTTTCAACCCACTCCGCTGCTGCTCAGGGAGACAATGCTTGG
66 GCTTAGGGAGATAAGATCTACAATTTTCAACCCACTCCGCTGCTGCTCAGGGAGACAATGCTTGG
* * *
395 TGACTTAAATCTGCTTCCCGCTATGTTGGAAAGATAAGATTTGTAGTCTTCGATCTGCTCCACTA
131 TGACTTAAATCTGCTTCCCACTATGTTGGAAAGATAAAATTTGTCGTCTTCGATCTGCTCCACTA
* * *
460 CCTCGCTTAGGGAGATAAGATCTACAATTTTCAACCCATTCCGCTGCAGCTCAGGGAGACAATGC
196 -CT-GCTTAGGGAGATAAGATCTACAATTTTCAACCCACTCCGCTGCTGCTCAGGGAGACAAGGC
525 TTGGTG
259 TTGGTG
* * * **
531 ACTTAAATCTGCTTCCCACTATCCTGGATAGAGCAGATTTGCCGTCTTCGATCTGCTCCACTACT
1 GCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCGTCTTCGATCTGCTCCACTACT
* *
596 GCTTAGGGAGATAAGATCTACAATTTTC-GCCCACTCCGTTGCTGTAAGGGGCACAATGCTTAGG
66 GCTTAGGGAGATAAGATCTACAATTTTCAACCCACTCC---GC--T-----G--C--TGCTCAGG
* *
660 GAGACAATGCTTGGTGACTTAAATCTGCTTCCCACTAAGTTGGAAAGATAAAATTTGTCTTCTTC
117 GAGACAATGCTTGGTGACTTAAATCTGCTTCCCACTATGTTGGAAAGATAAAATTTGTCGTCTTC
* * *
725 GATCTGTTCCACTAGTGCTTAGGGAGAGAAGATCTACAATTTTCAACCCACTCCGCTGCTGCTCA
182 GATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATTTTCAACCCACTCCGCTGCTGCTCA
*
790 GGGAGACAAGACTTGGTG
247 GGGAGACAAGGCTTGGTG
*
808 GCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGACTTGCCGTCTTCGATCTGCTCCACTACT
1 GCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCGTCTTCGATCTGCTCCACTACT
*
873 GCTTAGGGAGATAAGATCTACAATTTTCCAACTCACTCCGCTGCTGCTCAGGGAGACAATGCTTG
66 GCTTAGGGAGATAAGATCTACAATTTT-CAACCCACTCCGCTGCTGCTCAGGGAGACAATGCTTG
* * * * *
938 GTGACATAAATCTGCTTCCCACTATCTTGGAAATATAAGATTTGTCGTCTTCGATCTGCTCCACA
130 GTGACTTAAATCTGCTTCCCACTATGTTGGAAAGATAAAATTTGTCGTCTTCGATCTGCTCCACT
*
1003 ACTGCTTAGGGATATAAGATCTACAATTTTCAACCCACTCCGCTGCTGCTCAGGGAGACAAGGCT
195 ACTGCTTAGGGAGATAAGATCTACAATTTTCAACCCACTCCGCTGCTGCTCAGGGAGACAAGGCT
1068 TGGTG
260 TGGTG
* ** *
1073 GCTTAAATCTGCTTCCCACTATCCTGGAAAGAGCAGATTTACCGTCTTCGATCTGCTCCACTACT
1 GCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCGTCTTCGATCTGCTCCACTACT
* * * * *
1138 GCTTAGGGAGATAAGATCTACTATTTTCAACCCACTCTGTTGCTG-TAAGGGGGACAATGCTTGG
66 GCTTAGGGAGATAAGATCTACAATTTTCAACCCACTCCGCTGCTGCTCAGGGAGACAATGCTTGG
* * *
1202 TGACTTAAATCTGCTTCCCACTATGTTGGAAAGAT-AAGTTTGCCGTCTTCGGTCTGCTCCACTA
131 TGACTTAAATCTGCTTCCCACTATGTTGGAAAGATAAAATTTGTCGTCTTCGATCTGCTCCACTA
** *
1266 CTGCTTAGGGAGATAAGATCTACAATTTTTCAACTTACTTCGCTTGCTGCTCACGGG-GACAAGG
196 CTGCTTAGGGAGATAAGATCTACAA-TTTTCAACCCACTCCGC-TGCTGCTCA-GGGAGACAAGG
*
1330 CTAGGTG
258 CTTGGTG
* * * * * *
1337 GCTTAAATTTGCTTTTCCC-CTATCTTTGGAAATATAAGATATGTCATCTTTCGATCAGCTCCAC
1 GCTTAAATCTGC--TTCCCACTATC-TTGGAAAGATAAGATTTGCCGTC-TTCGATCTGCTCCAC
* * *
1401 TACTGCTTAGGAAGATAAGATCTATAATTTTTCAACCCATTCCGCTGCTGCTCAGGGAGACAATG
62 TACTGCTTAGGGAGATAAGATCTACAA-TTTTCAACCCACTCCGCTGCTGCTCAGGGAGACAATG
*
1466 CTTGGTGACTT-AATCTGCTTCCCACTA-GTTGGAAAGATAAAATTTGTCTTCTTCGATCTGCTC
126 CTTGGTGACTTAAATCTGCTTCCCACTATGTTGGAAAGATAAAATTTGTCGTCTTCGATCTGCTC
* * * *
1529 CACTAGTGCTTATGGAGA-GAGATCTACAAATTTCA
191 CACTACTGCTTAGGGAGATAAGATCTACAATTTTCA
1564 NNNNNNNNNN
Statistics
Matches: 1159, Mismatches: 112, Indels: 54
0.87 0.08 0.04
Matches are distributed among these distances:
262 48 0.04
263 63 0.05
264 229 0.20
265 247 0.21
266 172 0.15
267 60 0.05
268 73 0.06
269 24 0.02
270 1 0.00
274 1 0.00
275 1 0.00
276 2 0.00
277 149 0.13
278 2 0.00
279 87 0.08
ACGTcount: A:0.25, C:0.24, G:0.20, T:0.31
Consensus pattern (264 bp):
GCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCGTCTTCGATCTGCTCCACTACT
GCTTAGGGAGATAAGATCTACAATTTTCAACCCACTCCGCTGCTGCTCAGGGAGACAATGCTTGG
TGACTTAAATCTGCTTCCCACTATGTTGGAAAGATAAAATTTGTCGTCTTCGATCTGCTCCACTA
CTGCTTAGGGAGATAAGATCTACAATTTTCAACCCACTCCGCTGCTGCTCAGGGAGACAAGGCTT
GGTG
Found at i:3273 original size:132 final size:132
Alignment explanation
Indices: 3023--4593 Score: 2245
Period size: 132 Copynumber: 11.9 Consensus size: 132
3013 NNNNNNNNNN
* * ** *
3023 CGCTACTGCTCAGGGAGACAATGCTTGGTGACTTAAATCTGCTTCCCACTAAGTTGGAAGGATAA
1 CGCTGCTGCTCAGGGAGACAAGGCTTGGTGACTTAAATCTGCTTCCCACTATCTTGGAAAGATAA
* *
3088 AATTTGTCTTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATTTTCAACCCAC
66 GATTTGTCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATTTTCAACCCAC
3153 TC
131 TC
*
3155 TGCT-CTTGCTCAGGGAGACAAGGCTTGGTGACTTAAATCTGCTTCCCACTATCTTGGAAAGATA
1 CGCTGC-TGCTCAGGGAGACAAGGCTTGGTGACTTAAATCTGCTTCCCACTATCTTGGAAAGATA
* * * * * * *
3219 AGATTTGTTGTCTTTGATCTGTTCTACTACTGCTAAGGGAGATAACATCAACAATTTTCAACCCA
65 AGATTTGTCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATTTTCAACCCA
3284 CTC
130 CTC
* * * ** * *
3287 TGCAGCTGCTCAGGGAGACTAA-GCTCGGTGACCGAAATCTGCTTCCCATTATCTTGGAAAAATA
1 CGCTGCTGCTCAGGGAGAC-AAGGCTTGGTGACTTAAATCTGCTTCCCACTATCTTGGAAAGATA
* ** * *
3351 AAATTTACCGTCTTCGATCTACCCCACTACTGCTTAGGGAGATAAGATCTACAATTTTCAACCCA
65 AGATTTGTCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATTTTCAACCCA
*
3416 TTC
130 CTC
* * *
3419 CGCTGCTGCTCAGTGAGACAATGCTTGTTGACTTAAATCTGCTTCCCACTA-CGTTGGAAAGATA
1 CGCTGCTGCTCAGGGAGACAAGGCTTGGTGACTTAAATCTGCTTCCCACTATC-TTGGAAAGATA
* * * * *
3483 AAATTTGTCTTCTTCGATCCGCTCCACTAGTGCTTAGGGAGAGAAGATCTACAATTTTCAACCCA
65 AGATTTGTCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATTTTCAACCCA
3548 CTC
130 CTC
* *
3551 CGCTCCTGCTCAGGGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTA-CGTTGGAAAGATA
1 CGCTGCTGCTCAGGGAGACAAGGCTTGGTGACTTAAATCTGCTTCCCACTATC-TTGGAAAGATA
* * * *
3615 AAATTTGTCTTCTTCGATCCGCTCCACTAGTGCTTAGGGAGATAAGATCTACAATTTTCAACCCA
65 AGATTTGTCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATTTTCAACCCA
3680 CTC
130 CTC
* * *
3683 CGCTGTTGCTCAGGGAGACAAGGCTTGGTGACTTAAATCTGCTTCCCATTATCTTGAAAAGATAA
1 CGCTGCTGCTCAGGGAGACAAGGCTTGGTGACTTAAATCTGCTTCCCACTATCTTGGAAAGATAA
* * * *
3748 GATTTGCCATCTTCGATCTGCTGCACTACTGCTTTGGGAGATAAGATCTACAATTTTCAACCCAC
66 GATTTGTCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATTTTCAACCCAC
*
3813 AC
131 TC
* * * *
3815 CGCTGCTACTCAGGGAGACAATGTTTGGTGACTTAAATCTGCTTCCCATTATCTTGGAAAGATAA
1 CGCTGCTGCTCAGGGAGACAAGGCTTGGTGACTTAAATCTGCTTCCCACTATCTTGGAAAGATAA
* * *
3880 GATTTGCCATCTTCGATCTGCTGCACTACTGCTTAGGGAGATAAGATCTACAATTTTCAACCCAC
66 GATTTGTCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATTTTCAACCCAC
*
3945 AC
131 TC
* *
3947 CGCTGCTGCTCAGTGAGACAATGCTTGGTGACTTAAATCTGCTTCCCACTATCTTGGAAAGATAA
1 CGCTGCTGCTCAGGGAGACAAGGCTTGGTGACTTAAATCTGCTTCCCACTATCTTGGAAAGATAA
* *
4012 GATTTGTTGTCTTCGATCTGCTCCACAACTGCTTAGGGAGATAAGATCTACAATTTTCAACCCAC
66 GATTTGTCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATTTTCAACCCAC
4077 TC
131 TC
* * *
4079 CGTTGCTG-TAAGGGGGACAAGGCTTGGTGACTTAAATCTGCTTCCCACTATCTTGGAAAGATAA
1 CGCTGCTGCTCAGGGAGACAAGGCTTGGTGACTTAAATCTGCTTCCCACTATCTTGGAAAGATAA
* * * * *
4143 GATTTGCCGTCTTCGATCTGCTCCACTTCTGCTTAGGAAGATAAGATCTATAATTTTCAACCCGC
66 GATTTGTCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATTTTCAACCCAC
4208 TC
131 TC
* * * * *
4210 CGTTGCTGCTCAGGGAGAGAAGGCTTGGTCACTCAAATCAGCTTCCCACTATCTTGGAAAGATAA
1 CGCTGCTGCTCAGGGAGACAAGGCTTGGTGACTTAAATCTGCTTCCCACTATCTTGGAAAGATAA
* * *
4275 GATTTGTAGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATTTTGAACTCAC
66 GATTTGTCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATTTTCAACCCAC
4340 TC
131 TC
* *
4342 CGCTGCTGCTCAGGGAGAC-AGTGCTTGGTGACATAAATCTGCTTCCCACTATCTTGGAAATATA
1 CGCTGCTGCTCAGGGAGACAAG-GCTTGGTGACTTAAATCTGCTTCCCACTATCTTGGAAAGATA
* * * *
4406 AGATTTGTCGTCTTCAATCTGCTCCACAACTGCTTAGGGACATAAGAACTACAATTTTCAACCCA
65 AGATTTGTCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATTTTCAACCCA
4471 CTC
130 CTC
* * * **
4474 CGCTGCTGCTCAGGGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCCTAGAAAGAGCA
1 CGCTGCTGCTCAGGGAGACAAGGCTTGGTGACTTAAATCTGCTTCCCACTATCTTGGAAAGATAA
*
4539 GATTTGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATT
66 GATTTGTCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATT
Statistics
Matches: 1292, Mismatches: 138, Indels: 18
0.89 0.10 0.01
Matches are distributed among these distances:
131 126 0.10
132 1160 0.90
133 6 0.00
ACGTcount: A:0.26, C:0.24, G:0.20, T:0.30
Consensus pattern (132 bp):
CGCTGCTGCTCAGGGAGACAAGGCTTGGTGACTTAAATCTGCTTCCCACTATCTTGGAAAGATAA
GATTTGTCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATTTTCAACCCAC
TC
Done.