Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold_853 ID=scaffold_853-JGI_221_v2.0

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3089
ACGTcount: A:0.32, C:0.20, G:0.15, T:0.33


Found at i:1490 original size:20 final size:19

Alignment explanation


    Indices: 1465--1509  Score: 54
    Period size: 19  Copynumber: 2.3  Consensus size: 19

       1455 ATGTTTTGAA

                             *  
       1465 AAAATTACAAAATAATCTTT
          1 AAAATT-CAAAATAATCATT

                   *     *     
       1485 AAAATTCCAAATATTCATT
          1 AAAATTCAAAATAATCATT

                  
       1504 AAAATT
          1 AAAATT

       1510 TCTAAAAAAA


Statistics
Matches: 22,  Mismatches: 3, Indels: 1
        0.85            0.12        0.04

Matches are distributed among these distances:
  19   16  0.73
  20    6  0.27

ACGTcount: A:0.53, C:0.11, G:0.00, T:0.36


Consensus pattern (19 bp):   
AAAATTCAAAATAATCATT
Done.