Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold_856 ID=scaffold_856-JGI_221_v2.0

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3069
ACGTcount: A:0.35, C:0.23, G:0.18, T:0.24


Found at i:2449 original size:15 final size:15

Alignment explanation


    Indices: 2429--2459  Score: 53
    Period size: 15  Copynumber: 2.1  Consensus size: 15

       2419 CAAACATCAC

                           
       2429 TCATAGCAACTTTAT
          1 TCATAGCAACTTTAT

                     *     
       2444 TCATAGCAATTTTAT
          1 TCATAGCAACTTTAT

             
       2459 T
          1 T

       2460 GAATTTGAAT


Statistics
Matches: 15,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  15   15  1.00

ACGTcount: A:0.32, C:0.16, G:0.06, T:0.45


Consensus pattern (15 bp):   
TCATAGCAACTTTAT
Done.