Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: scaffold_870 ID=scaffold_870-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 3001
ACGTcount: A:0.29, C:0.19, G:0.23, T:0.25
Warning! 100 characters in sequence are not A, C, G, or T
Found at i:249 original size:132 final size:132
Alignment explanation
Indices: 12--375 Score: 638
Period size: 132 Copynumber: 2.8 Consensus size: 132
2 ACGGCAAATC
* * **
12 TTATCCTTCCAAGATAGTGGGTGGCAGATTTAAGTCACCAAGCCTTGTCTCCCTGAGCAGCAGCG
1 TTATCTTTCCAACATAGTGGGAAGCAGATTTAAGTCACCAAGCCTTGTCTCCCTGAGCAGCAGCG
*
77 GAGTGGGTTGAAAATTGTAGATCTTTTCTCCCTAAACACTAGTGGAGCAGATCGAAGACGACAGA
66 GAGTGGGTTGAAAATTGTAGATCTTATCTCCCTAAACACTAGTGGAGCAGATCGAAGACGACAGA
142 TT
131 TT
* *
144 TTATCTTTCCAACATAGTGGGAAGCAGATTTAAGTCACAAAGCCCTGTCTCCCTGAGCAGCAGCG
1 TTATCTTTCCAACATAGTGGGAAGCAGATTTAAGTCACCAAGCCTTGTCTCCCTGAGCAGCAGCG
209 GAGTGGGTTGAAAATTGTAGATCTTATCTCCCTAAACACTAGTGGAGCAGATCGAAGACGACAGA
66 GAGTGGGTTGAAAATTGTAGATCTTATCTCCCTAAACACTAGTGGAGCAGATCGAAGACGACAGA
274 TT
131 TT
* *
276 TTATCTTTCCAACATAGTGGGAAGCAGATTTAAGTCACCAAGCATTGTCTCCCTGAGCAACAGCG
1 TTATCTTTCCAACATAGTGGGAAGCAGATTTAAGTCACCAAGCCTTGTCTCCCTGAGCAGCAGCG
*
341 GAGTGGGTTAAAAATTGTAGATCTTATCTCCCTAA
66 GAGTGGGTTGAAAATTGTAGATCTTATCTCCCTAA
376 GNNNNNNNNN
Statistics
Matches: 220, Mismatches: 12, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
132 220 1.00
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.27
Consensus pattern (132 bp):
TTATCTTTCCAACATAGTGGGAAGCAGATTTAAGTCACCAAGCCTTGTCTCCCTGAGCAGCAGCG
GAGTGGGTTGAAAATTGTAGATCTTATCTCCCTAAACACTAGTGGAGCAGATCGAAGACGACAGA
TT
Found at i:715 original size:132 final size:132
Alignment explanation
Indices: 477--3001 Score: 3683
Period size: 132 Copynumber: 19.1 Consensus size: 132
467 NNNNNNNNNN
* * *
477 ATCTTTCCAACATAGTGGGAAGTAGATTTAAGTCACCAAGCATTGTCTCCCTGAGCAGCAGCGGA
1 ATCTTTCCAAGATAGTGGGAAGCAGATTTAAGTCACCAAGCCTTGTCTCCCTGAGCAGCAGCGGA
* * * *
542 GTGGGTTGAAAATTGTAGATCTTATCTCCCTAAGCAGTAGTGAAGAAGATCGAAGACGGCAGATC
66 GTGGGTTGAAAATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGACAAATC
607 TT
131 TT
* *
609 ATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCACCAAGCCTTGTCTCCCTGAGCAGCAGCAGA
1 ATCTTTCCAAGATAGTGGGAAGCAGATTTAAGTCACCAAGCCTTGTCTCCCTGAGCAGCAGCGGA
* * * *
674 GTGGGTTGAAAATTGTAGATCTTATCTCCCTATGCAATAGTGGAGTAGATCGAAGACGGCAAATC
66 GTGGGTTGAAAATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGACAAATC
739 TT
131 TT
* *
741 ATCTTTCAAAGATAGTGGGAAGCAGATTTAAGTCACAAAGCCTTGTCTCCCTGAGCAGCAGCGGA
1 ATCTTTCCAAGATAGTGGGAAGCAGATTTAAGTCACCAAGCCTTGTCTCCCTGAGCAGCAGCGGA
* ** *
806 GTGGGTTGAAACTTACAGATCTGATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGACAAATC
66 GTGGGTTGAAAATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGACAAATC
871 TT
131 TT
* * ** * * * *
873 ATTTTTCCAAGATAGGGGGAAGTGGATTTAAGCCACCAAGCAATTGTCTCCCTGA-CAGCAACAG
1 ATCTTTCCAAGATAGTGGGAAGCAGATTTAAGTCACCAAGC-CTTGTCTCCCTGAGCAGCAGCGG
* * * * * *
937 AGTGGGTTGAAAATTATAGATCTTATCTCTCTACGCAGTAGTGGAACAGATCGATGATGACAAA-
65 AGTGGGTTGAAAATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGACAAAT
1001 CGTT
130 C-TT
* * * * * * *
1005 ATATTTCCATGATAGTGGGAAGCAGATTTAAGTGACTAAGCCTTGTCACCCTAAGCAGCATCGGA
1 ATCTTTCCAAGATAGTGGGAAGCAGATTTAAGTCACCAAGCCTTGTCTCCCTGAGCAGCAGCGGA
* * **
1070 GTGGGTTCAAAATTGAAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGGAAATC
66 GTGGGTTGAAAATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGACAAATC
1135 TT
131 TT
* * * *
1137 ATCTTTCCTACATAGTGGGAAGCAGATTTAAGCCACCAAGCCTTGTCTCCCTGAGCCGCAGCGGA
1 ATCTTTCCAAGATAGTGGGAAGCAGATTTAAGTCACCAAGCCTTGTCTCCCTGAGCAGCAGCGGA
* * *
1202 GTGGGCTGAAAATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAACAGATCGAAGATGACAAATC
66 GTGGGTTGAAAATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGACAAATC
1267 TT
131 TT
* * * *
1269 ATCTTTCCAAGATAGGGGGAAGTAGATTTAAGCCACCAAGCCTTGTCTCCCTGAGCACCAGCGGA
1 ATCTTTCCAAGATAGTGGGAAGCAGATTTAAGTCACCAAGCCTTGTCTCCCTGAGCAGCAGCGGA
* * *
1334 GTTGGTTGAAAATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGACCGAAGACGGCAAATC
66 GTGGGTTGAAAATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGACAAATC
1399 TT
131 TT
* * *
1401 ATCTTTCCAAGATAGTGGGAAGCAGATTTAAGTCACCAAGCATTGTCTCCCT-AACAGCAACGGA
1 ATCTTTCCAAGATAGTGGGAAGCAGATTTAAGTCACCAAGCCTTGTCTCCCTGAGCAGCAGCGGA
* * *
1465 GTGGGTTGAAAATTGTAGATCTTATCTCGCTAAGCAGTAGTGGAACAGATCGAAGACGGCAAATC
66 GTGGGTTGAAAATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGACAAATC
1530 TT
131 TT
*
1532 ATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCACCAAGCCTTGTCTCCCTGAGCAGCAGCGGA
1 ATCTTTCCAAGATAGTGGGAAGCAGATTTAAGTCACCAAGCCTTGTCTCCCTGAGCAGCAGCGGA
* * * *
1597 GTGGGTTGAAAATTTTAGATCTTATCTCCCTAAGTAGTGGTGGAGCAGATCGAAGACGGCAAATC
66 GTGGGTTGAAAATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGACAAATC
1662 TT
131 TT
* * *
1664 ATCCTTCCAAGATAGTGGGTAGCAGATTTAAGTCACCAAGCCTTGTCTCCCTGAACAGCAGCGGA
1 ATCTTTCCAAGATAGTGGGAAGCAGATTTAAGTCACCAAGCCTTGTCTCCCTGAGCAGCAGCGGA
* * * *
1729 GTGAGTTGAAAATTGTAGATCTTATCTCACTAAGCAGTAGTGAAGCAGATCGAAGACGGCAAATC
66 GTGGGTTGAAAATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGACAAATC
1794 TT
131 TT
* * *
1796 ATCCTTCCAAGATAGTGGGTAGCAGATTTAAGTCACCAAGCCTTGTCTCCCTGAACAGCAGCGGA
1 ATCTTTCCAAGATAGTGGGAAGCAGATTTAAGTCACCAAGCCTTGTCTCCCTGAGCAGCAGCGGA
* ** ** *
1861 GTGAGTTGAAAATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATTAAAGGTGGCAAATC
66 GTGGGTTGAAAATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGACAAATC
1926 TT
131 TT
* * *
1928 ATCTTTCCAATATAGTGGGAAGCAGATTTAAGTCACCAAGTCTCGTCTCCCTGAGCAGCAGCGGC
1 ATCTTTCCAAGATAGTGGGAAGCAGATTTAAGTCACCAAGCCTTGTCTCCCTGAGCAGCA---GC
* *
1993 GGAGTGGGTTGAAAATTGTAGATCTTATCTGCCTAAGCAGTAGTGGAGCAGATCTAAGACGACAA
63 GGAGTGGGTTGAAAATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGACAA
2058 ATCTT
128 ATCTT
* * * * *
2063 ATCTTTCCAAGATAGGGGGAAGTAGATTTAAGCCACCAAGCCTTGTCTACCTGAGGAGCAGCGGA
1 ATCTTTCCAAGATAGTGGGAAGCAGATTTAAGTCACCAAGCCTTGTCTCCCTGAGCAGCAGCGGA
*
2128 GTGGGTTGAAAATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGATAAATC
66 GTGGGTTGAAAATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGACAAATC
2193 TT
131 TT
* * * *
2195 ATCTTTCTAAGATAGTGGGAAGCAGATTTAAGTCACCAAGCATTGTCTCCCTGA-CAACAACGGA
1 ATCTTTCCAAGATAGTGGGAAGCAGATTTAAGTCACCAAGCCTTGTCTCCCTGAGCAGCAGCGGA
* * * *
2259 GTGGGTTGAAAATTCTAGATCTTCTCTCCCTTAGCAGTAGTGGAGTAGATCGAAGACGACAAATC
66 GTGGGTTGAAAATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGACAAATC
2324 TT
131 TT
* * **
2326 ATCTTTCCAAGATAGTGGGAAGTACATTTAAGGAACCAAGCCTTGTCTCCCTGAGCAGCAGCGGA
1 ATCTTTCCAAGATAGTGGGAAGCAGATTTAAGTCACCAAGCCTTGTCTCCCTGAGCAGCAGCGGA
*
2391 GTGGGTTGAAAATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGACAGATC
66 GTGGGTTGAAAATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGACAAATC
2456 TT
131 TT
* * * *
2458 ATCTTTCTAAGATAGTGGGAAGCAGATTTAAGCCACCAAGCCTTGTCTCCCTAAGCAGGAGCGGA
1 ATCTTTCCAAGATAGTGGGAAGCAGATTTAAGTCACCAAGCCTTGTCTCCCTGAGCAGCAGCGGA
* * * * *
2523 GTGGGTTGAAATTTGTAGATCTTCTTTCCCTAAGCACTAGTGGAGCAGATCGAAGACGACAAATT
66 GTGGGTTGAAAATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGACAAATC
2588 TT
131 TT
* * * * *
2590 ATCTTTCCAACATAGTCGGAAGTAGATTTAAGTCACCAAGCATTGTCTCCCTGAGGAGCAGCGGA
1 ATCTTTCCAAGATAGTGGGAAGCAGATTTAAGTCACCAAGCCTTGTCTCCCTGAGCAGCAGCGGA
* *
2655 GTGGGTTGAAAATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGTAGACCGAAGACGACAAATC
66 GTGGGTTGAAAATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGACAAATC
2720 TT
131 TT
* * * * * * * *
2722 ATCTTTCCAACATAGTGGGTAGCATATTTAGGTCACCAAGCATTGTCTCCCAGA-TAGCAACGGA
1 ATCTTTCCAAGATAGTGGGAAGCAGATTTAAGTCACCAAGCCTTGTCTCCCTGAGCAGCAGCGGA
* *
2786 GTGGGTTGAAAATTGTAGATCTTATCTCCCTAAGCAGTTGTGAAGCAGATCGAAGACGACAAATC
66 GTGGGTTGAAAATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGACAAATC
2851 TT
131 TT
* *
2853 ATCTTTCCAAGATAGTGGGAAGCAGATTTAAGTCACCAAGCATTGTCTCCCTGAGCAGGAGCGGA
1 ATCTTTCCAAGATAGTGGGAAGCAGATTTAAGTCACCAAGCCTTGTCTCCCTGAGCAGCAGCGGA
* * * * *
2918 GTGGGTTGAAAATTGTAGATCTTCTCTCCCTAAACACTAGTGGAGCAGATCGAAGACGACAGATT
66 GTGGGTTGAAAATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGACAAATC
2983 TT
131 TT
*
2985 ATCTTTCCAACATAGTG
1 ATCTTTCCAAGATAGTG
Statistics
Matches: 2146, Mismatches: 237, Indels: 20
0.89 0.10 0.01
Matches are distributed among these distances:
131 370 0.17
132 1646 0.77
133 13 0.01
135 117 0.05
ACGTcount: A:0.30, C:0.20, G:0.24, T:0.26
Consensus pattern (132 bp):
ATCTTTCCAAGATAGTGGGAAGCAGATTTAAGTCACCAAGCCTTGTCTCCCTGAGCAGCAGCGGA
GTGGGTTGAAAATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGACAAATC
TT
Found at i:1727 original size:527 final size:528
Alignment explanation
Indices: 477--3001 Score: 3664
Period size: 527 Copynumber: 4.8 Consensus size: 528
467 NNNNNNNNNN
* *
477 ATCTTTCCAACATAGTGGGAAGTAGATTTAAGTCACCAAGCATTGTCTCCCTGAGCAGCAGCGGA
1 ATCTTTCCAAGATAGTGGGAAGTAGATTTAAGTCACCAAGCCTTGTCTCCCTGAGCAGCAGCGGA
* * *
542 GTGGGTTGAAAATTGTAGATCTTATCTCCCTAAGCAGTAGTGAAGAAGATCGAAGACGGCAGATC
66 GTGGGTTGAAAATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGCAAATC
* * *
607 TTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCACCAAGCCTTGTCTCCCTGAGCAGCAGCA
131 TTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGTCACCAAGCCTTGTCTCCCTGAACAGCAGCG
* * ** *
672 GAGTGGGTTGAAAATTGTAGATCTTATCTCCCTATGCAATAGTGGAGTAGATCGAAGACGGCAAA
196 GAGTGGGTTGAAAATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAACAGATCGAAGACGACAAA
* *
737 TCTTATCTTTCAAAGATAGTGGGAAGCAGATTTAAGTCACAAAGCCTTGTCTCCCTGAGCAGCAG
261 TCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGTCACCAAGCCTTGTCTCCCTGAGCAGCAG
* ** *
802 CGGAGTGGGTTGAAACTTACAGATCTGATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGACA
326 CGGAGTGGGTTGAAAATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGACA
* * ** *
867 AATCTTATTTTTCCAAGATAGGGGGAAGTGGATTTAAGCCACCAAGCAATTGTCTCCCTGA-CAG
391 AATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCACCAAGC-ATTGTCTCCCTAAGCAG
* * * * * *
931 CAACAGAGTGGGTTGAAAATTATAGATCTTATCTCTCTACGCAGTAGTGGAACAGATCGATGATG
455 CAACGGAGTGGGTTGAAAATTGTAGATCTTATCTCGCTAAGCAGTAGTGGAACAGATCGAAGACG
996 ACAAA-CGTT
520 ACAAATC-TT
* * * * * * * *
1005 ATATTTCCATGATAGTGGGAAGCAGATTTAAGTGACTAAGCCTTGTCACCCTAAGCAGCATCGGA
1 ATCTTTCCAAGATAGTGGGAAGTAGATTTAAGTCACCAAGCCTTGTCTCCCTGAGCAGCAGCGGA
* * *
1070 GTGGGTTCAAAATTGAAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGGAAATC
66 GTGGGTTGAAAATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGCAAATC
* * * * *
1135 TTATCTTTCCTACATAGTGGGAAGCAGATTTAAGCCACCAAGCCTTGTCTCCCTGAGCCGCAGCG
131 TTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGTCACCAAGCCTTGTCTCCCTGAACAGCAGCG
* *
1200 GAGTGGGCTGAAAATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAACAGATCGAAGATGACAAA
196 GAGTGGGTTGAAAATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAACAGATCGAAGACGACAAA
* * * *
1265 TCTTATCTTTCCAAGATAGGGGGAAGTAGATTTAAGCCACCAAGCCTTGTCTCCCTGAGCACCAG
261 TCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGTCACCAAGCCTTGTCTCCCTGAGCAGCAG
* * *
1330 CGGAGTTGGTTGAAAATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGACCGAAGACGGCA
326 CGGAGTGGGTTGAAAATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGACA
*
1395 AATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGTCACCAAGCATTGTCTCCCTAA-CAGC
391 AATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCACCAAGCATTGTCTCCCTAAGCAGC
*
1459 AACGGAGTGGGTTGAAAATTGTAGATCTTATCTCGCTAAGCAGTAGTGGAACAGATCGAAGACGG
456 AACGGAGTGGGTTGAAAATTGTAGATCTTATCTCGCTAAGCAGTAGTGGAACAGATCGAAGACGA
1524 CAAATCTT
521 CAAATCTT
* *
1532 ATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCACCAAGCCTTGTCTCCCTGAGCAGCAGCGGA
1 ATCTTTCCAAGATAGTGGGAAGTAGATTTAAGTCACCAAGCCTTGTCTCCCTGAGCAGCAGCGGA
* * *
1597 GTGGGTTGAAAATTTTAGATCTTATCTCCCTAAGTAGTGGTGGAGCAGATCGAAGACGGCAAATC
66 GTGGGTTGAAAATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGCAAATC
* *
1662 TTATCCTTCCAAGATAGTGGGTAGCAGATTTAAGTCACCAAGCCTTGTCTCCCTGAACAGCAGCG
131 TTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGTCACCAAGCCTTGTCTCCCTGAACAGCAGCG
* * *
1727 GAGTGAGTTGAAAATTGTAGATCTTATCTCACTAAGCAGTAGT-GAAGCAGATCGAAGACGGCAA
196 GAGTGGGTTGAAAATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAA-CAGATCGAAGACGACAA
* * *
1791 ATCTTATCCTTCCAAGATAGTGGGTAGCAGATTTAAGTCACCAAGCCTTGTCTCCCTGAACAGCA
260 ATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGTCACCAAGCCTTGTCTCCCTGAGCAGCA
* ** ** *
1856 GCGGAGTGAGTTGAAAATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATTAAAGGTGGC
325 GCGGAGTGGGTTGAAAATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGAC
* * *
1921 AAATCTTATCTTTCCAATATAGTGGGAAGCAGATTTAAGTCACCAAGTC-TCGTCTCCCTGAGCA
390 AAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCACCAAG-CATTGTCTCCCT-A--A
** * *
1985 GCAGCGGCGGAGTGGGTTGAAAATTGTAGATCTTATCT-GCCTAAGCAGTAGTGGAGCAGATCTA
451 GCAGCAACGGAGTGGGTTGAAAATTGTAGATCTTATCTCG-CTAAGCAGTAGTGGAACAGATCGA
2049 AGACGACAAATCTT
515 AGACGACAAATCTT
* * * *
2063 ATCTTTCCAAGATAGGGGGAAGTAGATTTAAGCCACCAAGCCTTGTCTACCTGAGGAGCAGCGGA
1 ATCTTTCCAAGATAGTGGGAAGTAGATTTAAGTCACCAAGCCTTGTCTCCCTGAGCAGCAGCGGA
**
2128 GTGGGTTGAAAATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGATAAATC
66 GTGGGTTGAAAATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGCAAATC
* * * *
2193 TTATCTTTCTAAGATAGTGGGAAGCAGATTTAAGTCACCAAGCATTGTCTCCCTG-ACAACAACG
131 TTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGTCACCAAGCCTTGTCTCCCTGAACAGCAGCG
* * * **
2257 GAGTGGGTTGAAAATTCTAGATCTTCTCTCCCTTAGCAGTAGTGGAGTAGATCGAAGACGACAAA
196 GAGTGGGTTGAAAATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAACAGATCGAAGACGACAAA
* * **
2322 TCTTATCTTTCCAAGATAGTGGGAAGTACATTTAAGGAACCAAGCCTTGTCTCCCTGAGCAGCAG
261 TCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGTCACCAAGCCTTGTCTCCCTGAGCAGCAG
2387 CGGAGTGGGTTGAAAATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGACA
326 CGGAGTGGGTTGAAAATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGACA
* * * *
2452 GATCTTATCTTTCTAAGATAGTGGGAAGCAGATTTAAGCCACCAAGCCTTGTCTCCCTAAGCAGG
391 AATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCACCAAGCATTGTCTCCCTAAGCAGC
* * * * * * *
2517 AGCGGAGTGGGTTGAAATTTGTAGATCTTCTTTCCCTAAGCACTAGTGGAGCAGATCGAAGACGA
456 AACGGAGTGGGTTGAAAATTGTAGATCTTATCTCGCTAAGCAGTAGTGGAACAGATCGAAGACGA
*
2582 CAAATTTT
521 CAAATCTT
* * * *
2590 ATCTTTCCAACATAGTCGGAAGTAGATTTAAGTCACCAAGCATTGTCTCCCTGAGGAGCAGCGGA
1 ATCTTTCCAAGATAGTGGGAAGTAGATTTAAGTCACCAAGCCTTGTCTCCCTGAGCAGCAGCGGA
* * *
2655 GTGGGTTGAAAATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGTAGACCGAAGACGACAAATC
66 GTGGGTTGAAAATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGCAAATC
* * * * * * * *
2720 TTATCTTTCCAACATAGTGGGTAGCATATTTAGGTCACCAAGCATTGTCTCCCAG-ATAGCAACG
131 TTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGTCACCAAGCCTTGTCTCCCTGAACAGCAGCG
*
2784 GAGTGGGTTGAAAATTGTAGATCTTATCTCCCTAAGCAGTTGT-GAAGCAGATCGAAGACGACAA
196 GAGTGGGTTGAAAATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAA-CAGATCGAAGACGACAA
* *
2848 ATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGTCACCAAGCATTGTCTCCCTGAGCAGGA
260 ATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGTCACCAAGCCTTGTCTCCCTGAGCAGCA
* * *
2913 GCGGAGTGGGTTGAAAATTGTAGATCTTCTCTCCCTAAACACTAGTGGAGCAGATCGAAGACGAC
325 GCGGAGTGGGTTGAAAATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGAC
* * *
2978 AGATTTTATCTTTCCAACATAGTG
390 AAATCTTATCTTTCCAAGATAGTG
Statistics
Matches: 1800, Mismatches: 185, Indels: 25
0.90 0.09 0.01
Matches are distributed among these distances:
526 5 0.00
527 923 0.51
528 395 0.22
529 2 0.00
530 231 0.13
531 244 0.14
ACGTcount: A:0.30, C:0.20, G:0.24, T:0.26
Consensus pattern (528 bp):
ATCTTTCCAAGATAGTGGGAAGTAGATTTAAGTCACCAAGCCTTGTCTCCCTGAGCAGCAGCGGA
GTGGGTTGAAAATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGCAAATC
TTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGTCACCAAGCCTTGTCTCCCTGAACAGCAGCG
GAGTGGGTTGAAAATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAACAGATCGAAGACGACAAA
TCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGTCACCAAGCCTTGTCTCCCTGAGCAGCAG
CGGAGTGGGTTGAAAATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGACA
AATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCACCAAGCATTGTCTCCCTAAGCAGC
AACGGAGTGGGTTGAAAATTGTAGATCTTATCTCGCTAAGCAGTAGTGGAACAGATCGAAGACGA
CAAATCTT
Done.