Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold_877 ID=scaffold_877-JGI_221_v2.0

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2936
ACGTcount: A:0.30, C:0.17, G:0.18, T:0.32

Warning! 100 characters in sequence are not A, C, G, or T


Found at i:99 original size:20 final size:19

Alignment explanation


    Indices: 74--111  Score: 67
    Period size: 20  Copynumber: 1.9  Consensus size: 19

         64 CATTTTTTTG

                                
         74 ATTCAGCTCATTCGAGCTCA
          1 ATTCAGCTCATT-GAGCTCA

                              
         94 ATTCAGCTCATTGAGCTC
          1 ATTCAGCTCATTGAGCTC

        112 GTTATTAGCT


Statistics
Matches: 18,  Mismatches: 0, Indels: 1
        0.95            0.00        0.05

Matches are distributed among these distances:
  19    6  0.33
  20   12  0.67

ACGTcount: A:0.24, C:0.29, G:0.16, T:0.32


Consensus pattern (19 bp):   
ATTCAGCTCATTGAGCTCA
Done.