Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold_878 ID=scaffold_878-JGI_221_v2.0

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4029
ACGTcount: A:0.23, C:0.12, G:0.13, T:0.22

Warning! 1233 characters in sequence are not A, C, G, or T


Found at i:1539 original size:18 final size:19

Alignment explanation


    Indices: 1518--1566  Score: 50
    Period size: 18  Copynumber: 2.7  Consensus size: 19

       1508 AAATGAAACA

                              *
       1518 AAAATTAAATAA-AATAGT
          1 AAAATTAAATAATAATAGG

                *              
       1536 AAAAAT-AATAATAATAGG
          1 AAAATTAAATAATAATAGG

               *          
       1554 AAATTTAAA-AATA
          1 AAAATTAAATAATA

       1567 TTTTTTTTCA


Statistics
Matches: 25,  Mismatches: 4, Indels: 4
        0.76            0.12        0.12

Matches are distributed among these distances:
  17    5  0.20
  18   18  0.72
  19    2  0.08

ACGTcount: A:0.67, C:0.00, G:0.06, T:0.27


Consensus pattern (19 bp):   
AAAATTAAATAATAATAGG
Done.