Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: scaffold_879 ID=scaffold_879-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 4191
ACGTcount: A:0.17, C:0.13, G:0.15, T:0.21
Warning! 1398 characters in sequence are not A, C, G, or T
Found at i:1094 original size:304 final size:303
Alignment explanation
Indices: 5--2493 Score: 3975
Period size: 304 Copynumber: 8.3 Consensus size: 303
1 CGAT
* * * *
5 GTGGTGTAACTCATTCGATATTTGCGTTTTGTGAAATAAACAA-TTAGCAACGATATTTGGTCGA
1 GTGGTGTAACTCATTCGTTATTTGCGTTTTCTGAAATAAATAACTT-GAAACGATATTTGGTCGA
* * **
69 ATTTGCATTTAAATTCGCGGCGCAACTGCGATAAGGGGCAGCCTTTATATGAATAGATTGCAAAA
65 ATTTGCATTTAAATTCGAGGCGCAAGTGCGATAAGGGGCAGCCTTTATATGAATAGATTGCGCAA
*
134 GAGTTGACGGGTGCGATCATACCGGCACTAATGCACCGGATCCCATCAGAACTCCGCAGCTAAGC
130 GAGTTGACGGGTGCGATCATACCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGCTAAGC
*
199 GTTCTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCCTCC
195 GTGCTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCCTCC
* * *
264 CATTTCATTTCATATAATATTTTTTTTAGTTTCATTTTCTCGAC
260 CATTTTATTTCATATAATGTTTTTTTTAGTTGCATTTTCTCGAC
* *
308 GTGGTGTAACTCATTCGTTATTTGCGTTTTCTGAAATAAATACCTTGAAACTATATTTGGTCGAA
1 GTGGTGTAACTCATTCGTTATTTGCGTTTTCTGAAATAAATAACTTGAAACGATATTTGGTCGAA
* *
373 TTTGC------ATTCGAGGCGCAAGTGCGATAAAGGGCAACCTTTATATGAATAGATTGCGCAAG
66 TTTGCATTTAAATTCGAGGCGCAAGTGCGATAAGGGGCAGCCTTTATATGAATAGATTGCGCAAG
* *
432 AGTTGACGGGTGCGATCATACCAGCATTAATGCACCGGATTCCATCAGAACTCCGCAGCTAAGCG
131 AGTTGACGGGTGCGATCATACCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGCTAAGCG
* *
497 TTCTTGGGCGAGAGTAGTACTACGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCCTCCC
196 TGCTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCCTCCC
* * *
562 ATTTTATTACAGATAA-GATTTTTTTAGTTGCATTTTCTCGAC
261 ATTTTATTTCATATAATGTTTTTTTTAGTTGCATTTTCTCGAC
* *
604 GTGGTGTAACTCAGTCGTTATTGTGCGTTTTCTGAAATAAATAACTTCAAACGATATTTGGTCGA
1 GTGGTGTAACTCATTCGTTATT-TGCGTTTTCTGAAATAAATAACTTGAAACGATATTTGGTCGA
* * *
669 ATTTGC------ATTCTAGGCGCAACTGCGATAAGGGGCAGCATTTATATGAATAGATTGCGCAA
65 ATTTGCATTTAAATTCGAGGCGCAAGTGCGATAAGGGGCAGCCTTTATATGAATAGATTGCGCAA
*
728 GAGTTGACGGGTGCGATCATACCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGTTAAGC
130 GAGTTGACGGGTGCGATCATACCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGCTAAGC
*
793 GTGCTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCTTGGGAAGTCCTCGTGTTGCACCCCTCC
195 GTGCTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCCTCC
858 CATTTTATTTCATATAATGTTTTTTTTAGTTGCATTTTCTCGAC
260 CATTTTATTTCATATAATGTTTTTTTTAGTTGCATTTTCTCGAC
* * * **
902 GTGGTGAAACTCATTCTTTATTTTCG-TTTCGTGAAATAAATAGGGTTGAAACGATATTTGGTCG
1 GTGGTGTAACTCATTCGTTATTTGCGTTTTC-TGAAATAAATA-ACTTGAAACGATATTTGGTCG
* * *
966 AAGTTGCATTTATATTCGAGGAGCAAGTGCGATAAGGGGCAGCCTTTATATGAATAGATTGCGCA
64 AATTTGCATTTAAATTCGAGGCGCAAGTGCGATAAGGGGCAGCCTTTATATGAATAGATTGCGCA
* * * *
1031 AGAGTTGACGGGTGCGATCATACCAGTACTAATGCACCGGATCCTATCAGAACTCCACAGTTAAG
129 AGAGTTGACGGGTGCGATCATACCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGCTAAG
* *
1096 CGTGCTTGGGCGAGAGTAGTACTAGGATGGGTGACCTTCTGGGAAGTCCTCGTGGTGCACCCCTC
194 CGTGCTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCCTC
*
1161 CCATTTTATCTCATATAATGTTTTTTTTAGTTGCATTTTCTCGAC
259 CCATTTTATTTCATATAATGTTTTTTTTAGTTGCATTTTCTCGAC
* * * * * *
1206 GTGGTGTAAATCATTCATTATTTGCGTTTTGTGAAATAAACAATTTGAAATGATATTTGGTCGAA
1 GTGGTGTAACTCATTCGTTATTTGCGTTTTCTGAAATAAATAACTTGAAACGATATTTGGTCGAA
* * * *
1271 TTTGCATTTAAATTCGAGGCGCAACTGCGATAAAGAGTAGCCTTTATATGAATAGATTGCGCAAG
66 TTTGCATTTAAATTCGAGGCGCAAGTGCGATAAGGGGCAGCCTTTATATGAATAGATTGCGCAAG
* *
1336 AGTTGACGGGTGCGATCATACCAGCACTAATGCACCGGATCCCATCAGAACTCCACAGTTAAGCG
131 AGTTGACGGGTGCGATCATACCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGCTAAGCG
*
1401 TGCTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCTTGGGAAGTCCTCGTGTTGCACCCCTCCC
196 TGCTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCCTCCC
* * *
1466 ATTTTATTTCATAAAATGTTTTTTTTTAGCTGCATTTTTTCGAC
261 ATTTTATTTCATATAATG-TTTTTTTTAGTTGCATTTTCTCGAC
*
1510 GTGGTGTAACTCATTCGTTATTTGCGTTTTCAGAAATAAATAACTTGAAACGATATTTGGTCGAA
1 GTGGTGTAACTCATTCGTTATTTGCGTTTTCTGAAATAAATAACTTGAAACGATATTTGGTCGAA
*
1575 TTTGCATTTAAATTCGAGGCGCAAGTGCGATAAGGGGCAGCCTTTATATGAATAAATTGCGCAAG
66 TTTGCATTTAAATTCGAGGCGCAAGTGCGATAAGGGGCAGCCTTTATATGAATAGATTGCGCAAG
* *
1640 AGTTGACGGGTGCGATCGTACCAGCACTAATGCACCGGATTCCATCAGAACTCCGCAGCTAAGCG
131 AGTTGACGGGTGCGATCATACCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGCTAAGCG
* * *
1705 TTCTTGGACGAGAGTAGTACTACGATGGGTGACCTCCT-GGAAGTCCTCGTGTTGCACCCCTCCC
196 TGCTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCCTCCC
* *
1769 ATTTTATTTCAAATAATATTTTTTTTAGTTGCATTTTCTCGAC
261 ATTTTATTTCATATAATGTTTTTTTTAGTTGCATTTTCTCGAC
1812 GTGGTGTAACTCATTCGTTATTTGCGTTTTCTGAAATAAATAACTTGAAACGATATTTGGTCGAA
1 GTGGTGTAACTCATTCGTTATTTGCGTTTTCTGAAATAAATAACTTGAAACGATATTTGGTCGAA
* *
1877 TTTGCATTTAAATTCAAGGCGCAAGTGCGATAAGGGGCAACCTTTATATGAATAGATTGCGCAAG
66 TTTGCATTTAAATTCGAGGCGCAAGTGCGATAAGGGGCAGCCTTTATATGAATAGATTGCGCAAG
* *
1942 AGTTGACGGGTGCAATCATACCAGCACTAATGCACTGGATCCCATCAGAACTCCGCAGCTAAGCG
131 AGTTGACGGGTGCGATCATACCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGCTAAGCG
* *
2007 TTCTTGGGCGAGAGTAGTACTACGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCCTCCC
196 TGCTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCCTCCC
** *
2072 ATTTTATAGCATATAAT-ATTTTTTTAGTTGCATTTTCTCGAC
261 ATTTTATTTCATATAATGTTTTTTTTAGTTGCATTTTCTCGAC
*
2114 GTGGTGTAACTCAATCGTTATTTGCGTTTTCTGAAATAAATAACTTGAAACGATATTTGGTCGAA
1 GTGGTGTAACTCATTCGTTATTTGCGTTTTCTGAAATAAATAACTTGAAACGATATTTGGTCGAA
2179 TTTGC------ATTCGAGGCGCAAGTGCGATAAGGGGCAGCCTTTATATGAATAGATTGCGCAAG
66 TTTGCATTTAAATTCGAGGCGCAAGTGCGATAAGGGGCAGCCTTTATATGAATAGATTGCGCAAG
2238 AGTTGACGGGTGCGATCATACCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAG-TGAAGC
131 AGTTGACGGGTGCGATCATACCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGCT-AAGC
2302 GTGCTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCCTCC
195 GTGCTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCCTCC
2367 CATTTTATTTCATATAATGTTTTTTTTTAGTTGCATTTTCTCGAC
260 CATTTTATTTCATATAATG-TTTTTTTTAGTTGCATTTTCTCGAC
* * *
2412 GTGGTGTAACTCATTCTTTATTTTCG-TTTCGTGAAATAAATAATTTGAAACGATATTTGGTCGA
1 GTGGTGTAACTCATTCGTTATTTGCGTTTTC-TGAAATAAATAACTTGAAACGATATTTGGTCGA
2476 ATTTGCATTTAAATTCGA
65 ATTTGCATTTAAATTCGA
2494 NNNNNNNNNN
Statistics
Matches: 2026, Mismatches: 136, Indels: 47
0.92 0.06 0.02
Matches are distributed among these distances:
295 1 0.00
296 239 0.12
297 437 0.22
298 153 0.08
302 340 0.17
303 361 0.18
304 492 0.24
305 3 0.00
ACGTcount: A:0.26, C:0.20, G:0.23, T:0.32
Consensus pattern (303 bp):
GTGGTGTAACTCATTCGTTATTTGCGTTTTCTGAAATAAATAACTTGAAACGATATTTGGTCGAA
TTTGCATTTAAATTCGAGGCGCAAGTGCGATAAGGGGCAGCCTTTATATGAATAGATTGCGCAAG
AGTTGACGGGTGCGATCATACCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGCTAAGCG
TGCTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCCTCCC
ATTTTATTTCATATAATGTTTTTTTTAGTTGCATTTTCTCGAC
Found at i:1573 original size:607 final size:600
Alignment explanation
Indices: 5--2493 Score: 3969
Period size: 607 Copynumber: 4.1 Consensus size: 600
1 CGAT
* * *
5 GTGGTGTAACTCATTCGA-TATTTGCGTTTTGTGAAATAAACAATTAGCAACGATATTTGGTCGA
1 GTGGTGTAACTCATTC-ATTATTTGCGTTTTGTGAAATAAATAATTTGAAACGATATTTGGTCGA
* **
69 ATTTGCATTTAAATTCGCGGCGCAACTGCGATAAGGGGCAGCCTTTATATGAATAGATTGCAAAA
65 ATTTGCATTTAAATTCGAGGCGCAACTGCGATAAGGGGCAGCCTTTATATGAATAGATTGCGCAA
*
134 GAGTTGACGGGTGCGATCATACCGGCACTAATGCACCGGATCCCATCAGAACTCCGCAGCTAAGC
130 GAGTTGACGGGTGCGATCATACCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGCTAAGC
*
199 GTTCTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCCTCC
195 GTGCTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCCTCC
* * *
264 CATTTCATTTCATATAATATTTTTTTTAGTTTCATTTTCTCGACGTGGTGTAACTCATTCGTTAT
260 CATTTTATTTCATATAATTTTTTTTTTAGTTGCATTTTCTCGACGTGGTGTAACTCATTCGTTAT
* *
329 TTGCGTTTTCTGAAATAAATACCTTGAAACTATATTTGGTCGAATTTGCATTCGAGGCGCAAGTG
325 TTGCGTTTTCTGAAATAAATAACTTGAAACGATATTTGGTCGAATTTGCATTCGAGGCGCAAGTG
* * *
394 CGATAAAGGGCAACCTTTATATGAATAGATTGCGCAAGAGTTGACGGGTGCGATCATACCAGCAT
390 CGATAAGGGGCAGCCTTTATATGAATAGATTGCGCAAGAGTTGACGGGTGCGATCATACCAGCAC
*
459 TAATGCACCGGATTCCATCAGAACTCCGCAGCTAAGCGTTCTTGGGCGAGAGTAGTACTACGATG
455 TAATGCACCGGATTCCATCAGAACTCCGCAGCTAAGCGTGCTTGGGCGAGAGTAGTACTACGATG
* * *
524 GGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCCTCCCATTTTATTACAGATAA-GATTTTTTTA
520 GGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCCTCCCATTTTATTTCATATAATGTTTTTTTTA
588 GTTGCATTTTCTCGAC
585 GTTGCATTTTCTCGAC
* * * * *
604 GTGGTGTAACTCAGTCGTTATTGTGCGTTTTCTGAAATAAATAACTTCAAACGATATTTGGTCGA
1 GTGGTGTAACTCATTCATTATT-TGCGTTTTGTGAAATAAATAATTTGAAACGATATTTGGTCGA
* *
669 ATTTGC------ATTCTAGGCGCAACTGCGATAAGGGGCAGCATTTATATGAATAGATTGCGCAA
65 ATTTGCATTTAAATTCGAGGCGCAACTGCGATAAGGGGCAGCCTTTATATGAATAGATTGCGCAA
*
728 GAGTTGACGGGTGCGATCATACCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGTTAAGC
130 GAGTTGACGGGTGCGATCATACCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGCTAAGC
*
793 GTGCTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCTTGGGAAGTCCTCGTGTTGCACCCCTCC
195 GTGCTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCCTCC
* * *
858 CATTTTATTTCATATAATGTTTTTTTTAGTTGCATTTTCTCGACGTGGTGAAACTCATTCTTTAT
260 CATTTTATTTCATATAATTTTTTTTTTAGTTGCATTTTCTCGACGTGGTGTAACTCATTCGTTAT
* ** *
923 TTTCG-TTTCGTGAAATAAATAGGGTTGAAACGATATTTGGTCGAAGTTGCATTTATATTCGAGG
325 TTGCGTTTTC-TGAAATAAATA-ACTTGAAACGATATTTGGTCGAATTTGC------ATTCGAGG
*
987 AGCAAGTGCGATAAGGGGCAGCCTTTATATGAATAGATTGCGCAAGAGTTGACGGGTGCGATCAT
382 CGCAAGTGCGATAAGGGGCAGCCTTTATATGAATAGATTGCGCAAGAGTTGACGGGTGCGATCAT
* * *
1052 ACCAGTACTAATGCACCGGA-TCCTATCAGAACTCCACAGTTAAGCGTGCTTGGGCGAGAGTAGT
447 ACCAGCACTAATGCACCGGATTCC-ATCAGAACTCCGCAGCTAAGCGTGCTTGGGCGAGAGTAGT
* * * *
1116 ACTAGGATGGGTGACCTTCTGGGAAGTCCTCGTGGTGCACCCCTCCCATTTTATCTCATATAATG
511 ACTACGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCCTCCCATTTTATTTCATATAATG
1181 TTTTTTTTAGTTGCATTTTCTCGAC
576 TTTTTTTTAGTTGCATTTTCTCGAC
* * *
1206 GTGGTGTAAATCATTCATTATTTGCGTTTTGTGAAATAAACAATTTGAAATGATATTTGGTCGAA
1 GTGGTGTAACTCATTCATTATTTGCGTTTTGTGAAATAAATAATTTGAAACGATATTTGGTCGAA
* * *
1271 TTTGCATTTAAATTCGAGGCGCAACTGCGATAAAGAGTAGCCTTTATATGAATAGATTGCGCAAG
66 TTTGCATTTAAATTCGAGGCGCAACTGCGATAAGGGGCAGCCTTTATATGAATAGATTGCGCAAG
* *
1336 AGTTGACGGGTGCGATCATACCAGCACTAATGCACCGGATCCCATCAGAACTCCACAGTTAAGCG
131 AGTTGACGGGTGCGATCATACCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGCTAAGCG
*
1401 TGCTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCTTGGGAAGTCCTCGTGTTGCACCCCTCCC
196 TGCTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCCTCCC
* * *
1466 ATTTTATTTCATAAAATGTTTTTTTTTAGCTGCATTTTTTCGACGTGGTGTAACTCATTCGTTAT
261 ATTTTATTTCATATAAT-TTTTTTTTTAGTTGCATTTTCTCGACGTGGTGTAACTCATTCGTTAT
*
1531 TTGCGTTTTCAGAAATAAATAACTTGAAACGATATTTGGTCGAATTTGCATTTAAATTCGAGGCG
325 TTGCGTTTTCTGAAATAAATAACTTGAAACGATATTTGGTCGAATTTGC------ATTCGAGGCG
* *
1596 CAAGTGCGATAAGGGGCAGCCTTTATATGAATAAATTGCGCAAGAGTTGACGGGTGCGATCGTAC
384 CAAGTGCGATAAGGGGCAGCCTTTATATGAATAGATTGCGCAAGAGTTGACGGGTGCGATCATAC
* *
1661 CAGCACTAATGCACCGGATTCCATCAGAACTCCGCAGCTAAGCGTTCTTGGACGAGAGTAGTACT
449 CAGCACTAATGCACCGGATTCCATCAGAACTCCGCAGCTAAGCGTGCTTGGGCGAGAGTAGTACT
* *
1726 ACGATGGGTGACCTCCT-GGAAGTCCTCGTGTTGCACCCCTCCCATTTTATTTCAAATAATATTT
514 ACGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCCTCCCATTTTATTTCATATAATGTTT
1790 TTTTTAGTTGCATTTTCTCGAC
579 TTTTTAGTTGCATTTTCTCGAC
* * *
1812 GTGGTGTAACTCATTCGTTATTTGCGTTTTCTGAAATAAATAACTTGAAACGATATTTGGTCGAA
1 GTGGTGTAACTCATTCATTATTTGCGTTTTGTGAAATAAATAATTTGAAACGATATTTGGTCGAA
* * *
1877 TTTGCATTTAAATTCAAGGCGCAAGTGCGATAAGGGGCAACCTTTATATGAATAGATTGCGCAAG
66 TTTGCATTTAAATTCGAGGCGCAACTGCGATAAGGGGCAGCCTTTATATGAATAGATTGCGCAAG
* *
1942 AGTTGACGGGTGCAATCATACCAGCACTAATGCACTGGATCCCATCAGAACTCCGCAGCTAAGCG
131 AGTTGACGGGTGCGATCATACCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGCTAAGCG
* *
2007 TTCTTGGGCGAGAGTAGTACTACGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCCTCCC
196 TGCTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCCTCCC
** * *
2072 ATTTTATAGCATATAA-TATTTTTTTAGTTGCATTTTCTCGACGTGGTGTAACTCAATCGTTATT
261 ATTTTATTTCATATAATTTTTTTTTTAGTTGCATTTTCTCGACGTGGTGTAACTCATTCGTTATT
2136 TGCGTTTTCTGAAATAAATAACTTGAAACGATATTTGGTCGAATTTGCATTCGAGGCGCAAGTGC
326 TGCGTTTTCTGAAATAAATAACTTGAAACGATATTTGGTCGAATTTGCATTCGAGGCGCAAGTGC
2201 GATAAGGGGCAGCCTTTATATGAATAGATTGCGCAAGAGTTGACGGGTGCGATCATACCAGCACT
391 GATAAGGGGCAGCCTTTATATGAATAGATTGCGCAAGAGTTGACGGGTGCGATCATACCAGCACT
* *
2266 AATGCACCGGATCCCATCAGAACTCCGCAG-TGAAGCGTGCTTGGGCGAGAGTAGTACTAGGATG
456 AATGCACCGGATTCCATCAGAACTCCGCAGCT-AAGCGTGCTTGGGCGAGAGTAGTACTACGATG
2330 GGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCCTCCCATTTTATTTCATATAATGTTTTTTTTT
520 GGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCCTCCCATTTTATTTCATATAATG-TTTTTTTT
2395 AGTTGCATTTTCTCGAC
584 AGTTGCATTTTCTCGAC
* * *
2412 GTGGTGTAACTCATTCTTTATTTTCGTTTCGTGAAATAAATAATTTGAAACGATATTTGGTCGAA
1 GTGGTGTAACTCATTCATTATTTGCGTTTTGTGAAATAAATAATTTGAAACGATATTTGGTCGAA
2477 TTTGCATTTAAATTCGA
66 TTTGCATTTAAATTCGA
2494 NNNNNNNNNN
Statistics
Matches: 1743, Mismatches: 123, Indels: 47
0.91 0.06 0.02
Matches are distributed among these distances:
593 4 0.00
594 249 0.14
595 24 0.01
597 1 0.00
598 149 0.09
599 61 0.03
600 146 0.08
601 225 0.13
602 44 0.03
604 91 0.05
606 319 0.18
607 367 0.21
608 59 0.03
609 4 0.00
ACGTcount: A:0.26, C:0.20, G:0.23, T:0.32
Consensus pattern (600 bp):
GTGGTGTAACTCATTCATTATTTGCGTTTTGTGAAATAAATAATTTGAAACGATATTTGGTCGAA
TTTGCATTTAAATTCGAGGCGCAACTGCGATAAGGGGCAGCCTTTATATGAATAGATTGCGCAAG
AGTTGACGGGTGCGATCATACCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGCTAAGCG
TGCTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCACCCCTCCC
ATTTTATTTCATATAATTTTTTTTTTAGTTGCATTTTCTCGACGTGGTGTAACTCATTCGTTATT
TGCGTTTTCTGAAATAAATAACTTGAAACGATATTTGGTCGAATTTGCATTCGAGGCGCAAGTGC
GATAAGGGGCAGCCTTTATATGAATAGATTGCGCAAGAGTTGACGGGTGCGATCATACCAGCACT
AATGCACCGGATTCCATCAGAACTCCGCAGCTAAGCGTGCTTGGGCGAGAGTAGTACTACGATGG
GTGACCTCCTGGGAAGTCCTCGTGTTGCACCCCTCCCATTTTATTTCATATAATGTTTTTTTTAG
TTGCATTTTCTCGAC
Done.