Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: scaffold_920 ID=scaffold_920-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 2431
ACGTcount: A:0.24, C:0.24, G:0.25, T:0.28
Found at i:150 original size:88 final size:88
Alignment explanation
Indices: 1--2431 Score: 3467
Period size: 88 Copynumber: 27.5 Consensus size: 88
* * *
1 ACCGAGGGAGGCAAGGTTTGTGTCTTTGACCTGCTTCGCTGTCAATGCAGGAAGGAAAGATCTGT
1 ACCGAGAGAGGCAAGGTTTGTGTCTTCGACCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGT
*
66 TGTCTTCAACCAGCTCCATCAGA
66 TGTCTTCAACCAGCTCCATCACA
* * * *
89 ACCGAGGGAGGCAAGGTTTGTGTCTTCGATCTGATTCGCTGTCAATGCAGGAAGGCAAGATCTTT
1 ACCGAGAGAGGCAAGGTTTGTGTCTTCGACCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGT
154 TGTCTTCAACCAGCTCCATCACA
66 TGTCTTCAACCAGCTCCATCACA
* * * * ** * * * * *
177 ACCGAGGGAAGCAGGGTTGGTGTCTTCGATTTGATTCGCTGTCAATGTTA-GACGGCAAGGTCTT
1 ACCGAGAGAGGCAAGGTTTGTGTCTTCGACCTGCTTCGCTGTCAATG-CAGGAAGGCAAGATCTG
241 TTGTCTTCAACCAGCTCCATCACA
65 TTGTCTTCAACCAGCTCCATCACA
* * *
265 ACCGAGGGAGGCAAGGTTTGTGTCTTCGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTTT
1 ACCGAGAGAGGCAAGGTTTGTGTCTTCGACCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGT
330 TGTCTTCAACCAGCTCCATCACA
66 TGTCTTCAACCAGCTCCATCACA
* *
353 ACCGAGAGAGGCAAGGTTTGTGTCTTCGACCTGCTTCGCTGACAATGCAGGAAGGCAAGATCTTT
1 ACCGAGAGAGGCAAGGTTTGTGTCTTCGACCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGT
*
418 TGTCTTCAACCAGCTCTATCACA
66 TGTCTTCAACCAGCTCCATCACA
*
441 ACCGAGGGAGGCAAGGTTTGTGTCTTCGACCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGT
1 ACCGAGAGAGGCAAGGTTTGTGTCTTCGACCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGT
*
506 TGTCTT-ACACCAGCTCCATCACC
66 TGTCTTCA-ACCAGCTCCATCACA
*
529 ACCGAG-GAAGGCAGGGTTTTGTGTTCTTCGACTCTGCATTCGTCTGTCAATGCTAGGAAGGCTA
1 ACCGAGAG-AGGCAAGG-TTTGTG-TCTTCGAC-CTGC-TTCG-CTGTCAATGC-AGGAAGGC-A
*
593 AGATCTTTTGTCTTCAACCAGCTCCATCAC-
58 AGATCTGTTGTCTTCAACCAGCTCCATCACA
*
623 ACCGAGAGAGGCAAGGTTTGTGTCTTCGACCTGCTTCGCTGTCAATGCAGGATGGCAAGATCTGT
1 ACCGAGAGAGGCAAGGTTTGTGTCTTCGACCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGT
* *
688 TGTCTTCAACCAGCTCTATCATA
66 TGTCTTCAACCAGCTCCATCACA
* * *
711 ACCGAGAGGAGGCAAGGTTTGTGTCTTTGATCTGCTTCGCTGTCAATGCAGGAAGACAAGATCTG
1 ACCGAGA-GAGGCAAGGTTTGTGTCTTCGACCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTG
776 TTTGTCTTCAACCAGCTCCATCACA
65 -TTGTCTTCAACCAGCTCCATCACA
* * * * *
801 ATCGAGAGAGGTAAGGTTTGTGTCTTCGACCTGCATCGCTGTCAATGGAGGAAGGCAAGATCTTT
1 ACCGAGAGAGGCAAGGTTTGTGTCTTCGACCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGT
866 TGTTCTTCAACCCAGCTCCATCACA
66 TG-TCTTCAA-CCAGCTCCATCACA
* * *
891 ACCGAGAGAGGCAAGGTTTGTGTCTTCGACCTCCTTCGTTGTCAATGCAGGAAGGCAAGATCTGC
1 ACCGAGAGAGGCAAGGTTTGTGTCTTCGACCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGT
956 TGTCTTCAACCAGCTCCATCACA
66 TGTCTTCAACCAGCTCCATCACA
* * *
979 ACCGAGAGAGGCAAGGTTTGTGTCTTTGATCTGATTCGCTGTCAATGCAGGAAGGCAAGATCTGT
1 ACCGAGAGAGGCAAGGTTTGTGTCTTCGACCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGT
* **
1044 TGTCTTCAACTAGCTTTATCACA
66 TGTCTTCAACCAGCTCCATCACA
* * * * *
1067 ACCGAGGGAGGTAAGGTTTGTGTCTTCGATCTGCTTCGCTATCAATGCAGGAAGGCAAGATCTTT
1 ACCGAGAGAGGCAAGGTTTGTGTCTTCGACCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGT
1132 TGTCTTCAACCAGCTCCATCACA
66 TGTCTTCAACCAGCTCCATCACA
* * * *
1155 ACCGAGAGAGGCAAGGTTTGTGTCTTTGCCCTGCTTCACTGTCAATACAGGAAGGC-AGTATCTG
1 ACCGAGAGAGGCAAGGTTTGTGTCTTCGACCTGCTTCGCTGTCAATGCAGGAAGGCAAG-ATCTG
1219 TTGTCTTCAACCAGCTCCATCACA
65 TTGTCTTCAACCAGCTCCATCACA
* * *
1243 ACCGAGGGAGGCAAAGTTTGTGTCTTCGACCTGCTTCAG-TGTCAATGCAGGAATGCAAGATCTG
1 ACCGAGAGAGGCAAGGTTTGTGTCTTCGACCTGCTTC-GCTGTCAATGCAGGAAGGCAAGATCTG
1307 TTGTCTTCAACCAGCTCCATCACA
65 TTGTCTTCAACCAGCTCCATCACA
* * *
1331 ACCGAGAGAGGCAATGTTTGTGTCTTCGATCTGATTCGCTGTCAATGCAGGAAGGCAAGATCTGT
1 ACCGAGAGAGGCAAGGTTTGTGTCTTCGACCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGT
* **
1396 TGTCTTCAACTAGCTTTATCACA
66 TGTCTTCAACCAGCTCCATCACA
* * * * *
1419 ACCGAGGGAGGTAAGGGTTGTGTCTTCGATCTGCTTCGCTGTCAATGTAGGAAGGCAAGATCTGT
1 ACCGAGAGAGGCAAGGTTTGTGTCTTCGACCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGT
*
1484 TGTCTTCAACCAGCTCCATCAGA
66 TGTCTTCAACCAGCTCCATCACA
* * * * * * * * * *
1507 ACCGAGAAAGGCAGGGCTTGTGTCTTCGATCTGATTCGCTTTCAATGTAGGAAGGTAAGATTTTT
1 ACCGAGAGAGGCAAGGTTTGTGTCTTCGACCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGT
1572 TGTCTTCAACCAGCTCCATCACA
66 TGTCTTCAACCAGCTCCATCACA
* * * * *
1595 ACCGAGGGAGGCAAGGTTTGTGTCTTCGACCTGCTTTGCTGTCAATGAATGAAGGCAAGATCTTT
1 ACCGAGAGAGGCAAGGTTTGTGTCTTCGACCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGT
* * *
1660 TCTTTTCAATCAGCTCCATCAC-
66 TGTCTTCAACCAGCTCCATCACA
*
1682 ACCGAGAGAGGCAAGGTTTGTGTCTTCGACCTGCTTCGCTGTCAATGGAGGAAGGCAAGATCTGT
1 ACCGAGAGAGGCAAGGTTTGTGTCTTCGACCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGT
1747 TGTCTTCAACCAGCTCCATCACA
66 TGTCTTCAACCAGCTCCATCACA
* * * * * * * * * *
1770 ACCGAGGGAGGCAGGGCTTGTGTCTTCGATCTGATTCTCTGTCAATGTAGGAAGGTAAGATTTTT
1 ACCGAGAGAGGCAAGGTTTGTGTCTTCGACCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGT
**
1835 TGTCTTCAACCAGGGCCATCACA
66 TGTCTTCAACCAGCTCCATCACA
* *
1858 ACCGAGAGAGGCAAGGGTTGTGTCTTCGACCTGCTTCGCTGTCAATGCAGGATGGCAAGATCTGT
1 ACCGAGAGAGGCAAGGTTTGTGTCTTCGACCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGT
* *
1923 TGTCTTCAACCAGCTCTATCATA
66 TGTCTTCAACCAGCTCCATCACA
* * * * *
1946 ACCGAGGGAGGCAAGGTTTGTGTCTTTGATCTGCTTCGCTGTCAATGCAGGAAGACAAGATCTTT
1 ACCGAGAGAGGCAAGGTTTGTGTCTTCGACCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGT
2011 TGTCTTCAACCAGCTCCATCAACA
66 TGTCTTCAACCAGCTCCATC-ACA
* * * * *
2035 ATCGAGAGAGGTAAGGTTTGTGTCTTCGACCTGCATCGCTGTCAATGGAGGAAGGCAAGATCTTT
1 ACCGAGAGAGGCAAGGTTTGTGTCTTCGACCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGT
*
2100 TGCCTTCAACCAGCTCCATCACA
66 TGTCTTCAACCAGCTCCATCACA
2123 ACCGAGAGAGGCAAGGTTTGTGTCTTCGACCTGCTTCGCTGTCAATGCA-GAAGGCAAGATCTGT
1 ACCGAGAGAGGCAAGGTTTGTGTCTTCGACCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGT
2187 TGTCTTCAACCAGCTCCATCACA
66 TGTCTTCAACCAGCTCCATCACA
* * *
2210 A-CTAGAGAGGCAAGGTTTGTGTCTTCGATCTTGATTCGCTGTCAATGCAGGAAGGCAAGATCTG
1 ACCGAGAGAGGCAAGGTTTGTGTCTTCGA-CCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTG
** *
2274 TTGTCTTCAACCAGCTTTACCACA
65 TTGTCTTCAACCAGCTCCATCACA
* * * * *
2298 ACCGAGGGAGGTAAGGTTTGTGTCTTCGATCTGCTTCGCTATCAATGCAGGAAGGCAAGATCTTT
1 ACCGAGAGAGGCAAGGTTTGTGTCTTCGACCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGT
2363 TGTCTTCAACCAGCTCCATCACA
66 TGTCTTCAACCAGCTCCATCACA
2386 ACCGAGAGAGGCAAGGTTTGTGTCTTCGACCTGCTTCGCTGTCAAT
1 ACCGAGAGAGGCAAGGTTTGTGTCTTCGACCTGCTTCGCTGTCAAT
Statistics
Matches: 2099, Mismatches: 217, Indels: 54
0.89 0.09 0.02
Matches are distributed among these distances:
86 26 0.01
87 168 0.08
88 1467 0.70
89 238 0.11
90 113 0.05
91 8 0.00
92 12 0.01
93 16 0.01
94 21 0.01
95 29 0.01
96 1 0.00
ACGTcount: A:0.24, C:0.24, G:0.25, T:0.28
Consensus pattern (88 bp):
ACCGAGAGAGGCAAGGTTTGTGTCTTCGACCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGT
TGTCTTCAACCAGCTCCATCACA
Found at i:537 original size:44 final size:44
Alignment explanation
Indices: 49--2400 Score: 515
Period size: 44 Copynumber: 53.2 Consensus size: 44
39 CTGTCAATGC
* *
49 AGGAAGGAAAGATCTGTTGTCTTCAACCAGCTCCATCAGAACCG
1 AGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCATCACAACCG
* * * * * * * ** *
93 AGGGAGGCAAGGTTTG-TGTCTTCGATCTGATTCGC-TGTCAA-TG
1 AGGAAGGCAAGATCTGTTGTCTTCAACCAG-CTC-CATCACAACCG
*
136 CAGGAAGGCAAGATCTTTTGTCTTCAACCAGCTCCATCACAACCG
1 -AGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCATCACAACCG
* * * * *** * ** *
181 AGGGAA-GCAGGGT-TGGTGTCTTCGATTTGATTCGC-TGTCAA-TG
1 A-GGAAGGCAAGATCTGTTGTCTTCAACCAG-CTC-CATCACAACCG
* * *
224 TTA-GACGGCAAGGTCTTTTGTCTTCAACCAGCTCCATCACAACCG
1 --AGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCATCACAACCG
* * * * * * ** *
269 AGGGAGGCAAGGTTTG-TGTCTTCGATCTGCTTCGC-TGTCAA-TG
1 AGGAAGGCAAGATCTGTTGTCTTCAACCAGC-TC-CATCACAACCG
*
312 CAGGAAGGCAAGATCTTTTGTCTTCAACCAGCTCCATCACAACCG
1 -AGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCATCACAACCG
* * * * * *
357 A-GAGAGGCAAGGTTTG-TGTCTTCGACCTGCTTCGC-TGACAA-TG
1 AGGA-AGGCAAGATCTGTTGTCTTCAACCAGC-TC-CATCACAACCG
* *
400 CAGGAAGGCAAGATCTTTTGTCTTCAACCAGCTCTATCACAACCG
1 -AGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCATCACAACCG
* * * * * ** *
445 AGGGAGGCAAGGTTTG-TGTCTTCGACCTGCTTCGC-TGTCAA-TG
1 AGGAAGGCAAGATCTGTTGTCTTCAACCAGC-TC-CATCACAACCG
*
488 CAGGAAGGCAAGATCTGTTGTCTT-ACACCAGCTCCATCACCACCG
1 -AGGAAGGCAAGATCTGTTGTCTTCA-ACCAGCTCCATCACAACCG
* * * * * * * * * *
533 AGGAAGGCAGGGT-TTTGTGTTCTTCGACTCTGCATTCGTCTGTCAATGCT
1 AGGAAGGCAAGATCTGT-TG-TCTTCAAC-CAGC-TCCATC--ACAA-CCG
*
583 AGGAAGGCTAAGATCTTTTGTCTTCAACCAGCTCCATCAC-ACCG
1 AGGAAGGC-AAGATCTGTTGTCTTCAACCAGCTCCATCACAACCG
* * * * ** *
627 A-GAGAGGCAAGGTTTG-TGTCTTCGACCTGCTTCGC-TGTCAA-TG
1 AGGA-AGGCAAGATCTGTTGTCTTCAACCAGC-TC-CATCACAACCG
* * *
670 CAGGATGGCAAGATCTGTTGTCTTCAACCAGCTCTATCATAACCG
1 -AGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCATCACAACCG
* * * ** * * ** *
715 AGAGGAGGCAAGGTTTG-TGTCTTTGATCTGCTTCGC-TGTCAA-TG
1 AG-GAAGGCAAGATCTGTTGTCTTCAACCAGC-TC-CATCACAACCG
* *
759 CAGGAAGACAAGATCTGTTTGTCTTCAACCAGCTCCATCACAATCG
1 -AGGAAGGCAAGATCTG-TTGTCTTCAACCAGCTCCATCACAACCG
* * * * * ** **
805 A-GAGAGGTAAGGTTTG-TGTCTTCGACCTGCATCGC-TGTCAATGG
1 AGGA-AGGCAAGATCTGTTGTCTTCAACCAGC-TC-CATCACAACCG
*
849 AGGAAGGCAAGATCTTTTGTTCTTCAACCCAGCTCCATCACAACCG
1 AGGAAGGCAAGATCTGTTG-TCTTCAA-CCAGCTCCATCACAACCG
* * * ** ** ** *
895 A-GAGAGGCAAGGTTTG-TGTCTTCGACCTCCTTCGTTGTCAA-TG
1 AGGA-AGGCAAGATCTGTTGTCTTCAACCAGC-TCCATCACAACCG
*
938 CAGGAAGGCAAGATCTGCTGTCTTCAACCAGCTCCATCACAACCG
1 -AGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCATCACAACCG
* * ** * * * ** *
983 A-GAGAGGCAAGGTTTG-TGTCTTTGATCTGATTCGC-TGTCAA-TG
1 AGGA-AGGCAAGATCTGTTGTCTTCAACCAG-CTC-CATCACAACCG
* **
1026 CAGGAAGGCAAGATCTGTTGTCTTCAACTAGCTTTATCACAACCG
1 -AGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCATCACAACCG
* * * * * * * **
1071 AGGGAGGTAAGGTTTG-TGTCTTCGATCTGCTTCGCTATCA-ATGC-
1 AGGAAGGCAAGATCTGTTGTCTTCAACCAGC-TC-C-ATCACAACCG
*
1115 AGGAAGGCAAGATCTTTTGTCTTCAACCAGCTCCATCACAACCG
1 AGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCATCACAACCG
* * *** * * ** *
1159 A-GAGAGGCAAGGTTTG-TGTCTTTGCCCTGCTTCACTGTCAATAC-
1 AGGA-AGGCAAGATCTGTTGTCTTCAACCAGCTCCA-TCACAA-CCG
1203 AGGAAGGC-AGTATCTGTTGTCTTCAACCAGCTCCATCACAACCG
1 AGGAAGGCAAG-ATCTGTTGTCTTCAACCAGCTCCATCACAACCG
* * * * * ** *
1247 AGGGAGGCAA-AGTTTG-TGTCTTCGACCTGCTTCAGTGTCAA-TG
1 AGGAAGGCAAGA-TCTGTTGTCTTCAACCAGCTCCA-TCACAACCG
*
1290 CAGGAATGCAAGATCTGTTGTCTTCAACCAGCTCCATCACAACCG
1 -AGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCATCACAACCG
* * * * * ** *
1335 A-GAGAGGCAATG-TTTG-TGTCTTCGATCTGATTCGC-TGTCAA-TG
1 AGGA-AGGCAA-GATCTGTTGTCTTCAACCAG-CTC-CATCACAACCG
* **
1378 CAGGAAGGCAAGATCTGTTGTCTTCAACTAGCTTTATCACAACCG
1 -AGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCATCACAACCG
* * * * * * ** *
1423 AGGGAGGTAAGGGT-TG-TGTCTTCGATCTGCTTCGC-TGTCAA-TG
1 AGGAAGGCAA-GATCTGTTGTCTTCAACCAGC-TC-CATCACAACCG
*
1466 TAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCATCAGAACCG
1 -AGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCATCACAACCG
* ** * * * * ** *
1511 AGAAAGGC-AGGGCT-TGTGTCTTCGATCTGATTCGC-TTTCAA-TG
1 AGGAAGGCAAGATCTGT-TGTCTTCAACCAG-CTC-CATCACAACCG
* * *
1554 TAGGAAGGTAAGATTTTTTGTCTTCAACCAGCTCCATCACAACCG
1 -AGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCATCACAACCG
* * * * * * ** *
1599 AGGGAGGCAAGGTTTG-TGTCTTCGACCTGCTTTGC-TGTCAA-TG
1 AGGAAGGCAAGATCTGTTGTCTTCAACCAGC--TCCATCACAACCG
* * * * *
1642 AATGAAGGCAAGATCTTTTCTTTTCAATCAGCTCCATCAC-ACCG
1 -AGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCATCACAACCG
* * * * ** **
1686 A-GAGAGGCAAGGTTTG-TGTCTTCGACCTGCTTCGC-TGTCAATGG
1 AGGA-AGGCAAGATCTGTTGTCTTCAACCAGC-TC-CATCACAACCG
1730 AGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCATCACAACCG
1 AGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCATCACAACCG
* ** * * * * ** *
1774 AGGGAGGC-AGGGCT-TGTGTCTTCGATCTGATTCTC-TGTCAA-TG
1 AGGAAGGCAAGATCTGT-TGTCTTCAACCAG-CTC-CATCACAACCG
* * * **
1817 TAGGAAGGTAAGATTTTTTGTCTTCAACCAGGGCCATCACAACCG
1 -AGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCATCACAACCG
* * * ** *
1862 A-GAGAGGCAAGGGT-TG-TGTCTTCGACCTGCTTCGC-TGTCAA-TG
1 AGGA-AGGCAA-GATCTGTTGTCTTCAACCAGC-TC-CATCACAACCG
* * *
1905 CAGGATGGCAAGATCTGTTGTCTTCAACCAGCTCTATCATAACCG
1 -AGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCATCACAACCG
* * * ** * * ** *
1950 AGGGAGGCAAGGTTTG-TGTCTTTGATCTGCTTCGC-TGTCAA-TG
1 AGGAAGGCAAGATCTGTTGTCTTCAACCAGC-TC-CATCACAACCG
* * *
1993 CAGGAAGACAAGATCTTTTGTCTTCAACCAGCTCCATCAACAATCG
1 -AGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCATC-ACAACCG
* * * * * ** **
2039 A-GAGAGGTAAGGTTTG-TGTCTTCGACCTGCATCGC-TGTCAATGG
1 AGGA-AGGCAAGATCTGTTGTCTTCAACCAGC-TC-CATCACAACCG
* *
2083 AGGAAGGCAAGATCTTTTGCCTTCAACCAGCTCCATCACAACCG
1 AGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCATCACAACCG
* * * * ** *
2127 A-GAGAGGCAAGGTTTG-TGTCTTCGACCTGCTTCGC-TGTCAA-TG
1 AGGA-AGGCAAGATCTGTTGTCTTCAACCAGC-TC-CATCACAACCG
*
2170 CA-GAAGGCAAGATCTGTTGTCTTCAACCAGCTCCATCACAA-CT
1 -AGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCATCACAACCG
* * * ** * ** *
2213 A-GAGAGGCAAGGTTTG-TGTCTTCGATCTTGATTCGC-TGTCAA-TG
1 AGGA-AGGCAAGATCTGTTGTCTTC-AACCAG-CTC-CATCACAACCG
** *
2257 CAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTTTACCACAACCG
1 -AGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCATCACAACCG
* * * * * * * **
2302 AGGGAGGTAAGGTTTG-TGTCTTCGATCTGCTTCGCTATCA-ATGC-
1 AGGAAGGCAAGATCTGTTGTCTTCAACCAGC-TC-C-ATCACAACCG
*
2346 AGGAAGGCAAGATCTTTTGTCTTCAACCAGCTCCATCACAACCG
1 AGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCATCACAACCG
2390 A-GAGAGGCAAG
1 AGGA-AGGCAAG
2401 GTTTGTGTCT
Statistics
Matches: 1566, Mismatches: 544, Indels: 396
0.62 0.22 0.16
Matches are distributed among these distances:
42 44 0.03
43 338 0.22
44 710 0.45
45 375 0.24
46 58 0.04
47 8 0.01
48 4 0.00
49 5 0.00
50 16 0.01
51 5 0.00
52 3 0.00
ACGTcount: A:0.24, C:0.24, G:0.25, T:0.28
Consensus pattern (44 bp):
AGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCATCACAACCG
Done.