Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold_934 ID=scaffold_934-JGI_221_v2.0

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2564
ACGTcount: A:0.29, C:0.18, G:0.17, T:0.28

Warning! 240 characters in sequence are not A, C, G, or T


Found at i:986 original size:17 final size:18

Alignment explanation


    Indices: 956--1001  Score: 64
    Period size: 18  Copynumber: 2.8  Consensus size: 18

        946 ATTTAAATTG

                              
        956 CGGTCGCGGTCGCGTTTT
          1 CGGTCGCGGTCGCGTTTT

                              
        974 CGGTCGC-GTCGCG-TTT
          1 CGGTCGCGGTCGCGTTTT

                          
        990 --GTCGCGGTCGCG
          1 CGGTCGCGGTCGCG

       1002 GACATAACGG


Statistics
Matches: 27,  Mismatches: 0, Indels: 5
        0.84            0.00        0.16

Matches are distributed among these distances:
  14    5  0.19
  15    6  0.22
  16    3  0.11
  17    6  0.22
  18    7  0.26

ACGTcount: A:0.00, C:0.30, G:0.41, T:0.28


Consensus pattern (18 bp):   
CGGTCGCGGTCGCGTTTT
Done.