Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold_942 ID=scaffold_942-JGI_221_v2.0

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3970
ACGTcount: A:0.18, C:0.12, G:0.07, T:0.19

Warning! 1733 characters in sequence are not A, C, G, or T


Found at i:3561 original size:102 final size:102

Alignment explanation


    Indices: 3379--3568  Score: 317
    Period size: 102  Copynumber: 1.9  Consensus size: 102

       3369 ATCCGTTATT

                  *                 *      *                                 
       3379 GGTGGATTCAACACTTAGCAACCAGCAATGATTCGGGGAATCAACACTTAGCAACCCCTTGGGGG
          1 GGTGGAATCAACACTTAGCAACCACCAATGAATCGGGGAATCAACACTTAGCAACCCCTTGGGGG

                 *                               
       3444 AATCAGCACTCAGCAACCCCCTTCACATTTAAAATAC
         66 AATCAACACTCAGCAACCCCCTTCACATTTAAAATAC

                      *                                *                     
       3481 GGTGGAATCAGCACTTAGCAACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTTGGGGG
          1 GGTGGAATCAACACTTAGCAACCACCAATGAATCGGGGAATCAACACTTAGCAACCCCTTGGGGG

                      *            
       3546 AATCAACACTTAGCAACCCCCTT
         66 AATCAACACTCAGCAACCCCCTT

       3569 TATATTCAAT


Statistics
Matches: 81,  Mismatches: 7, Indels: 0
        0.92            0.08        0.00

Matches are distributed among these distances:
 102   81  1.00

ACGTcount: A:0.32, C:0.29, G:0.20, T:0.19


Consensus pattern (102 bp):   
GGTGGAATCAACACTTAGCAACCACCAATGAATCGGGGAATCAACACTTAGCAACCCCTTGGGGG
AATCAACACTCAGCAACCCCCTTCACATTTAAAATAC
Done.