Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr09 ID=Chr09-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 70713020
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 1142373 characters in sequence are not A, C, G, or T
File 10 of 226
Found at i:4488179 original size:5 final size:6
Alignment explanation
Indices: 4488164--4488188 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
4488154 AGGAGGGAGT
4488164 GGGGGA GGGGGA GGGGGA GGGGGA G
1 GGGGGA GGGGGA GGGGGA GGGGGA G
4488189 CTGAAAACGA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.16, C:0.00, G:0.84, T:0.00
Consensus pattern (6 bp):
GGGGGA
Found at i:4488201 original size:81 final size:81
Alignment explanation
Indices: 4488083--4488263 Score: 247
Period size: 81 Copynumber: 2.2 Consensus size: 81
4488073 AGCCACGTTA
* * * *
4488083 GGGAGTGGTGGAGGAGGAGGGGGAGCTGAAGATGAATTCTTTACGGTAA-AAGATGGAGATATAG
1 GGGAG-GG-GGAGGGGGAGGGGGAGCTGAAAACGAATTCTTTACAG-AAGAAGATGGAGATATAG
4488147 CTGAGAAAGGAGGGAGTGG
63 CTGAGAAAGGAGGGAGTGG
*
4488166 GGGAGGGGGAGGGGGAGGGGGAGCTGAAAACGAATTCTTTACAGAAGAAGATGGAGATGTAGCTG
1 GGGAGGGGGAGGGGGAGGGGGAGCTGAAAACGAATTCTTTACAGAAGAAGATGGAGATATAGCTG
* *
4488231 AGGATGGAGGGAGTGG
66 AGAAAGGAGGGAGTGG
* *
4488247 TGGTGGGGGAGGGGGAG
1 GGGAGGGGGAGGGGGAG
4488264 ACCGGAACAA
Statistics
Matches: 88, Mismatches: 9, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
80 2 0.02
81 79 0.90
82 2 0.02
83 5 0.06
ACGTcount: A:0.29, C:0.05, G:0.50, T:0.16
Consensus pattern (81 bp):
GGGAGGGGGAGGGGGAGGGGGAGCTGAAAACGAATTCTTTACAGAAGAAGATGGAGATATAGCTG
AGAAAGGAGGGAGTGG
Found at i:4493088 original size:26 final size:26
Alignment explanation
Indices: 4493037--4493088 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
4493027 CAAATATGGC
* * *
4493037 TCCATTTGTCATTACCCATTGGGATA
1 TCCATTCGTCATTACCCATAGCGATA
*
4493063 TCCATTCGTCATTACCGATAGCGATA
1 TCCATTCGTCATTACCCATAGCGATA
4493089 ATAAGGGAAT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.25, C:0.25, G:0.15, T:0.35
Consensus pattern (26 bp):
TCCATTCGTCATTACCCATAGCGATA
Found at i:4495058 original size:47 final size:46
Alignment explanation
Indices: 4494998--4495090 Score: 132
Period size: 46 Copynumber: 2.0 Consensus size: 46
4494988 TTTCTTAAAA
* * *
4494998 ACACCTTTTTAACACATACAAAAAAAATTTATTTCAGTATGATAAGT
1 ACACCTATCTAACACACAC-AAAAAAATTTATTTCAGTATGATAAGT
* *
4495045 ACACCTATCTAACACACACACAAAAATTTATTTCGGTATGATAAGT
1 ACACCTATCTAACACACACAAAAAAATTTATTTCAGTATGATAAGT
4495091 TTGGAATAAG
Statistics
Matches: 41, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
46 25 0.61
47 16 0.39
ACGTcount: A:0.43, C:0.18, G:0.08, T:0.31
Consensus pattern (46 bp):
ACACCTATCTAACACACACAAAAAAATTTATTTCAGTATGATAAGT
Found at i:4502766 original size:18 final size:18
Alignment explanation
Indices: 4502743--4502782 Score: 80
Period size: 18 Copynumber: 2.2 Consensus size: 18
4502733 TGCATTGCAT
4502743 GTGATAATAATGTGTCAA
1 GTGATAATAATGTGTCAA
4502761 GTGATAATAATGTGTCAA
1 GTGATAATAATGTGTCAA
4502779 GTGA
1 GTGA
4502783 CAGCAAAACA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.38, C:0.05, G:0.25, T:0.33
Consensus pattern (18 bp):
GTGATAATAATGTGTCAA
Found at i:4509909 original size:30 final size:29
Alignment explanation
Indices: 4509850--4509910 Score: 79
Period size: 30 Copynumber: 2.1 Consensus size: 29
4509840 AAATGAAAAA
* *
4509850 TTATATATAACTTTTGATTTTATATAATT
1 TTATATATAAATTTTGATTTGATATAATT
4509879 TTATATATAAAATTTTGATTTGAT-TCAATT
1 TTATATAT-AAATTTTGATTTGATAT-AATT
4509909 TT
1 TT
4509911 TGTAAATTAC
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
29 9 0.32
30 19 0.68
ACGTcount: A:0.34, C:0.03, G:0.05, T:0.57
Consensus pattern (29 bp):
TTATATATAAATTTTGATTTGATATAATT
Found at i:4510541 original size:20 final size:19
Alignment explanation
Indices: 4510518--4510557 Score: 53
Period size: 20 Copynumber: 2.1 Consensus size: 19
4510508 AGCATAAGCC
*
4510518 ATAGATTAATACAATAACAA
1 ATAGATTAATAAAAT-ACAA
*
4510538 ATAGTTTAATAAAATACAA
1 ATAGATTAATAAAATACAA
4510557 A
1 A
4510558 ACAAAGTTAC
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 5 0.28
20 13 0.72
ACGTcount: A:0.60, C:0.07, G:0.05, T:0.28
Consensus pattern (19 bp):
ATAGATTAATAAAATACAA
Found at i:4513754 original size:23 final size:24
Alignment explanation
Indices: 4513719--4513766 Score: 64
Period size: 23 Copynumber: 2.0 Consensus size: 24
4513709 AAACATATAT
4513719 TTTTATACAATAAAAATTATTTAAA
1 TTTTATACAATAAAAATT-TTTAAA
*
4513744 TTTTAT-C-ATAAATATTTTTAAA
1 TTTTATACAATAAAAATTTTTAAA
4513766 T
1 T
4513767 GATTAATCCT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
22 7 0.32
23 8 0.36
24 1 0.05
25 6 0.27
ACGTcount: A:0.46, C:0.04, G:0.00, T:0.50
Consensus pattern (24 bp):
TTTTATACAATAAAAATTTTTAAA
Found at i:4525655 original size:18 final size:19
Alignment explanation
Indices: 4525632--4525667 Score: 65
Period size: 18 Copynumber: 1.9 Consensus size: 19
4525622 AAAAACACTA
4525632 GTAGAAATTA-TTATTATT
1 GTAGAAATTAGTTATTATT
4525650 GTAGAAATTAGTTATTAT
1 GTAGAAATTAGTTATTAT
4525668 ACATACATAC
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
18 10 0.59
19 7 0.41
ACGTcount: A:0.39, C:0.00, G:0.14, T:0.47
Consensus pattern (19 bp):
GTAGAAATTAGTTATTATT
Found at i:4528163 original size:2 final size:2
Alignment explanation
Indices: 4528156--4528185 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
4528146 CTCTGCTCTG
4528156 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
1 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
4528186 AAAGCTCTTA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.50, G:0.00, T:0.00
Consensus pattern (2 bp):
CA
Found at i:4542061 original size:17 final size:17
Alignment explanation
Indices: 4542025--4542077 Score: 61
Period size: 18 Copynumber: 3.0 Consensus size: 17
4542015 TGGAACTTAC
* *
4542025 AAATTTACTTTATTTTTT
1 AAATTTAGTTTA-ATTTT
4542043 AAATTTAGTTTAATTTT
1 AAATTTAGTTTAATTTT
*
4542060 AAATTTGAGTTTTATTTT
1 AAATTT-AGTTTAATTTT
4542078 TTTATATAAA
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
17 10 0.32
18 21 0.68
ACGTcount: A:0.30, C:0.02, G:0.06, T:0.62
Consensus pattern (17 bp):
AAATTTAGTTTAATTTT
Found at i:4543705 original size:15 final size:16
Alignment explanation
Indices: 4543687--4543719 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
4543677 ATTTTTGTAT
*
4543687 TATTTT-AATATTAAA
1 TATTTTAAAGATTAAA
4543702 TATTTTAAAGATTAAA
1 TATTTTAAAGATTAAA
4543718 TA
1 TA
4543720 AATTCTAAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 6 0.38
16 10 0.62
ACGTcount: A:0.48, C:0.00, G:0.03, T:0.48
Consensus pattern (16 bp):
TATTTTAAAGATTAAA
Found at i:4584820 original size:2 final size:2
Alignment explanation
Indices: 4584813--4584842 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
4584803 GAAGAATGTT
4584813 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
4584843 GATTTGAAGT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:4604447 original size:2 final size:2
Alignment explanation
Indices: 4604442--4604468 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
4604432 TACACCAAAA
4604442 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
4604469 CAAAAATGCC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:4615556 original size:15 final size:15
Alignment explanation
Indices: 4615536--4615569 Score: 59
Period size: 15 Copynumber: 2.3 Consensus size: 15
4615526 CCACTATATA
4615536 TAATAATAATAATAG
1 TAATAATAATAATAG
*
4615551 TAATAATAATAATGG
1 TAATAATAATAATAG
4615566 TAAT
1 TAAT
4615570 TTCTAATTTA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.56, C:0.00, G:0.09, T:0.35
Consensus pattern (15 bp):
TAATAATAATAATAG
Found at i:4625760 original size:30 final size:30
Alignment explanation
Indices: 4625720--4625804 Score: 82
Period size: 30 Copynumber: 2.9 Consensus size: 30
4625710 AAAGGCCAAG
* * *
4625720 AAAAATCTTTTACTCACTTTTAATGGGTCC
1 AAAAAGCTTTTACTAACTTTTAAGGGGTCC
**
4625750 AAAAAGCTTTTTTTAACTTTTAAGGGGTCC
1 AAAAAGCTTTTACTAACTTTTAAGGGGTCC
*** *
4625780 -AAATTTTTTTATTAACTTTTAAGGG
1 AAAAAGCTTTTACTAACTTTTAAGGG
4625805 ACTTAAAAAA
Statistics
Matches: 46, Mismatches: 9, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
29 21 0.46
30 25 0.54
ACGTcount: A:0.31, C:0.13, G:0.13, T:0.44
Consensus pattern (30 bp):
AAAAAGCTTTTACTAACTTTTAAGGGGTCC
Found at i:4630613 original size:18 final size:18
Alignment explanation
Indices: 4630530--4630613 Score: 66
Period size: 18 Copynumber: 4.7 Consensus size: 18
4630520 ATATATAAAT
*
4630530 TAAAAATAAAAAAATT-A
1 TAAAAATAATAAAATTAA
* *
4630547 GAAAATTATATAAAATTAA
1 TAAAAATA-ATAAAATTAA
* * *
4630566 AATAAAACAATAAAA-TAC
1 TA-AAAATAATAAAATTAA
4630584 TAAAAA-ACATAAAATTAA
1 TAAAAATA-ATAAAATTAA
4630602 TAAAAATAATAA
1 TAAAAATAATAA
4630614 TAAAAAATAG
Statistics
Matches: 52, Mismatches: 9, Indels: 11
0.72 0.12 0.15
Matches are distributed among these distances:
16 1 0.02
17 16 0.31
18 22 0.42
19 9 0.17
20 4 0.08
ACGTcount: A:0.71, C:0.04, G:0.01, T:0.24
Consensus pattern (18 bp):
TAAAAATAATAAAATTAA
Found at i:4630730 original size:2 final size:2
Alignment explanation
Indices: 4630723--4630757 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
4630713 ATTAATGCTT
4630723 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
4630758 GATTTTAACT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:4635587 original size:17 final size:17
Alignment explanation
Indices: 4635565--4635598 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
4635555 TTAAGTCTTG
4635565 AAACATTACATAATTAA
1 AAACATTACATAATTAA
4635582 AAACATTACATAATTAA
1 AAACATTACATAATTAA
4635599 GTTCGGTTAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.59, C:0.12, G:0.00, T:0.29
Consensus pattern (17 bp):
AAACATTACATAATTAA
Found at i:4639629 original size:23 final size:20
Alignment explanation
Indices: 4639603--4639664 Score: 52
Period size: 23 Copynumber: 2.8 Consensus size: 20
4639593 ATATATATAA
4639603 ATATTTATTTTAATATTTTTAGT
1 ATATTTATTTT-ATATTTTT--T
4639626 ATATTTGATGTATTATATTTTTT
1 ATATTT-AT-T-TTATATTTTTT
*
4639649 AAATTTATTTTTATAT
1 ATATTTA-TTTTATAT
4639665 AAAAGACTAA
Statistics
Matches: 34, Mismatches: 1, Indels: 10
0.76 0.02 0.22
Matches are distributed among these distances:
21 6 0.18
22 2 0.06
23 13 0.38
24 2 0.06
25 9 0.26
26 2 0.06
ACGTcount: A:0.31, C:0.00, G:0.05, T:0.65
Consensus pattern (20 bp):
ATATTTATTTTATATTTTTT
Found at i:4660163 original size:30 final size:30
Alignment explanation
Indices: 4660127--4660184 Score: 98
Period size: 30 Copynumber: 1.9 Consensus size: 30
4660117 AACCATGCCA
* *
4660127 GTCATAGCAAGTTGGTACTTATGGTCTTAT
1 GTCATAGCAAATTGGAACTTATGGTCTTAT
4660157 GTCATAGCAAATTGGAACTTATGGTCTT
1 GTCATAGCAAATTGGAACTTATGGTCTT
4660185 GTACAAATGC
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.26, C:0.14, G:0.22, T:0.38
Consensus pattern (30 bp):
GTCATAGCAAATTGGAACTTATGGTCTTAT
Found at i:4668937 original size:20 final size:19
Alignment explanation
Indices: 4668899--4668941 Score: 52
Period size: 20 Copynumber: 2.2 Consensus size: 19
4668889 AATATTTTAT
*
4668899 TAATAAATTAAATTATAAAA
1 TAATAAATTAAAATAT-AAA
4668919 TAATAAATGTAAAAT-TAAA
1 TAATAAAT-TAAAATATAAA
4668938 TAAT
1 TAAT
4668942 TTATGAAACA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
19 7 0.33
20 9 0.43
21 5 0.24
ACGTcount: A:0.63, C:0.00, G:0.02, T:0.35
Consensus pattern (19 bp):
TAATAAATTAAAATATAAA
Found at i:4682652 original size:23 final size:25
Alignment explanation
Indices: 4682607--4682656 Score: 68
Period size: 23 Copynumber: 2.1 Consensus size: 25
4682597 TATATATGAG
*
4682607 TTAAAACAAATAATATATGTACAAT
1 TTAAAACAAATAATATATCTACAAT
*
4682632 TTAATACAAAT-A-ATATCTACAAT
1 TTAAAACAAATAATATATCTACAAT
4682655 TT
1 TT
4682657 GAAATGAATT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
23 12 0.52
24 1 0.04
25 10 0.43
ACGTcount: A:0.52, C:0.10, G:0.02, T:0.36
Consensus pattern (25 bp):
TTAAAACAAATAATATATCTACAAT
Found at i:4682856 original size:23 final size:23
Alignment explanation
Indices: 4682671--4682896 Score: 115
Period size: 23 Copynumber: 9.7 Consensus size: 23
4682661 TGAATTGGAT
* *
4682671 AATTTACAATAAATAATATATAATA
1 AATTTAAAAT-AATAATA-ATGATA
* *
4682696 AATTTGAAATAATAAAACAT-ATAA
1 AATTTAAAATAATAATA-ATGAT-A
** *
4682720 AATTT-AAA-AATTTTGATGAT-
1 AATTTAAAATAATAATAATGATA
* * *
4682740 AATTCTAGAATAATCATACGTGATA
1 AATT-TAAAATAATAATA-ATGATA
** * *
4682765 AATCCAAAATAATAGTATATAATA
1 AATTTAAAATAATAATA-ATGATA
* *
4682789 AGTTT-AAA-AATATTAATGATA
1 AATTTAAAATAATAATAATGATA
** **
4682810 AATTTAAAATAATGTTAACAATA
1 AATTTAAAATAATAATAATGATA
*
4682833 AATTTAAAATAATAATATTGATA
1 AATTTAAAATAATAATAATGATA
*
4682856 AA-TTACAAATAATAAAACATGATA
1 AATTTA-AAATAATAATA-ATGATA
*
4682880 AATCTAAAATAATAATA
1 AATTTAAAATAATAATA
4682897 TACAATACAC
Statistics
Matches: 150, Mismatches: 39, Indels: 25
0.70 0.18 0.12
Matches are distributed among these distances:
20 4 0.03
21 12 0.08
22 19 0.13
23 52 0.35
24 50 0.33
25 13 0.09
ACGTcount: A:0.56, C:0.05, G:0.05, T:0.34
Consensus pattern (23 bp):
AATTTAAAATAATAATAATGATA
Found at i:4687769 original size:13 final size:13
Alignment explanation
Indices: 4687751--4687776 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
4687741 TGCTTTTGGG
4687751 TTCAAAAATAATT
1 TTCAAAAATAATT
4687764 TTCAAAAATAATT
1 TTCAAAAATAATT
4687777 CTGATTTAGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.54, C:0.08, G:0.00, T:0.38
Consensus pattern (13 bp):
TTCAAAAATAATT
Found at i:4689669 original size:13 final size:13
Alignment explanation
Indices: 4689651--4689678 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
4689641 CAATACAGGC
4689651 AAGAACCGAAACA
1 AAGAACCGAAACA
4689664 AAGAACCGAAACA
1 AAGAACCGAAACA
4689677 AA
1 AA
4689679 TAATGCAATA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.64, C:0.21, G:0.14, T:0.00
Consensus pattern (13 bp):
AAGAACCGAAACA
Found at i:4692668 original size:83 final size:82
Alignment explanation
Indices: 4692532--4692693 Score: 234
Period size: 83 Copynumber: 2.0 Consensus size: 82
4692522 AATACTACTG
* * * *
4692532 TATATATACATCATGTTATACATCACATGATAAGCATGGATTTACTCCTAACACTATACACACTT
1 TATATATACATCATATTAAACATCACATGATAAGCATGGAATTACTCCTAACACTATACACACAT
*
4692597 ATATAAAGACTGTAATA
66 ATACAAAGACTGTAATA
* * *
4692614 TATATATATATCATATTAAAGATCACATGAATAAGCATGGAATTACTCCTAACACTATATACACA
1 TATATATACATCATATTAAACATCACATG-ATAAGCATGGAATTACTCCTAACACTATACACACA
*
4692679 TATACACAGACTGTA
65 TATACAAAGACTGTA
4692694 TCCAGATCAT
Statistics
Matches: 70, Mismatches: 9, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
82 25 0.36
83 45 0.64
ACGTcount: A:0.42, C:0.18, G:0.09, T:0.31
Consensus pattern (82 bp):
TATATATACATCATATTAAACATCACATGATAAGCATGGAATTACTCCTAACACTATACACACAT
ATACAAAGACTGTAATA
Found at i:4694085 original size:22 final size:22
Alignment explanation
Indices: 4694021--4694087 Score: 107
Period size: 22 Copynumber: 3.0 Consensus size: 22
4694011 TTAGTGATGC
**
4694021 TAACGTACTAAGCTCTCATGGC
1 TAACGTACTAAGCTCTCATGTT
4694043 TAACGTACTAAGCTCTCATGTT
1 TAACGTACTAAGCTCTCATGTT
*
4694065 TCACGTACTAAGCTCTCATGTT
1 TAACGTACTAAGCTCTCATGTT
4694087 T
1 T
4694088 GAACAATAAA
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
22 42 1.00
ACGTcount: A:0.25, C:0.25, G:0.15, T:0.34
Consensus pattern (22 bp):
TAACGTACTAAGCTCTCATGTT
Found at i:4705826 original size:13 final size:12
Alignment explanation
Indices: 4705774--4705831 Score: 50
Period size: 11 Copynumber: 5.0 Consensus size: 12
4705764 TCTTATATAT
4705774 ATATTAAATAAA
1 ATATTAAATAAA
*
4705786 ATAAT-AATAAA
1 ATATTAAATAAA
* **
4705797 ATATCATTTAAA
1 ATATTAAATAAA
4705809 A-ATTAAATTAAA
1 ATATTAAA-TAAA
4705821 ATATT-AATAAA
1 ATATTAAATAAA
4705832 CTAATATTTA
Statistics
Matches: 35, Mismatches: 8, Indels: 7
0.70 0.16 0.14
Matches are distributed among these distances:
11 16 0.46
12 16 0.46
13 3 0.09
ACGTcount: A:0.64, C:0.02, G:0.00, T:0.34
Consensus pattern (12 bp):
ATATTAAATAAA
Found at i:4712287 original size:18 final size:17
Alignment explanation
Indices: 4712264--4712311 Score: 53
Period size: 18 Copynumber: 2.8 Consensus size: 17
4712254 AATGAGATCG
4712264 AAAATATTTATTAATTAT
1 AAAATATTTATTAATT-T
*
4712282 AAAATATTCA-TAATTT
1 AAAATATTTATTAATTT
* *
4712298 ATATTATTTATTAA
1 AAAATATTTATTAA
4712312 ATTAGTTAAA
Statistics
Matches: 25, Mismatches: 4, Indels: 3
0.78 0.12 0.09
Matches are distributed among these distances:
16 8 0.32
17 8 0.32
18 9 0.36
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (17 bp):
AAAATATTTATTAATTT
Found at i:4720697 original size:40 final size:40
Alignment explanation
Indices: 4720653--4720728 Score: 152
Period size: 40 Copynumber: 1.9 Consensus size: 40
4720643 AAGTTGATAG
4720653 AATTTTACATATTAAAAAGATGAAAAGAAAAGCTTTCAAA
1 AATTTTACATATTAAAAAGATGAAAAGAAAAGCTTTCAAA
4720693 AATTTTACATATTAAAAAGATGAAAAGAAAAGCTTT
1 AATTTTACATATTAAAAAGATGAAAAGAAAAGCTTT
4720729 TAAATTTTCA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 36 1.00
ACGTcount: A:0.54, C:0.07, G:0.11, T:0.29
Consensus pattern (40 bp):
AATTTTACATATTAAAAAGATGAAAAGAAAAGCTTTCAAA
Found at i:4723334 original size:24 final size:24
Alignment explanation
Indices: 4723285--4723333 Score: 66
Period size: 24 Copynumber: 2.1 Consensus size: 24
4723275 TGGTTACAAC
* *
4723285 TTTATAAAATGTACATAAATTATT
1 TTTATAATATATACATAAATTATT
4723309 TTTATAATATATA-ATAAA-TATT
1 TTTATAATATATACATAAATTATT
4723331 TTT
1 TTT
4723334 TCATAATCAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
22 7 0.30
23 5 0.22
24 11 0.48
ACGTcount: A:0.45, C:0.02, G:0.02, T:0.51
Consensus pattern (24 bp):
TTTATAATATATACATAAATTATT
Found at i:4724363 original size:16 final size:16
Alignment explanation
Indices: 4724342--4724375 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
4724332 AAATTTAAAG
4724342 AAAATGAATATTATAA
1 AAAATGAATATTATAA
4724358 AAAATGAATATTATAA
1 AAAATGAATATTATAA
4724374 AA
1 AA
4724376 GTATTAATTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.65, C:0.00, G:0.06, T:0.29
Consensus pattern (16 bp):
AAAATGAATATTATAA
Found at i:4728488 original size:10 final size:10
Alignment explanation
Indices: 4728475--4728500 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
4728465 ATTTTTTTTA
4728475 TTTTTAAAAT
1 TTTTTAAAAT
4728485 TTTTTAAAAT
1 TTTTTAAAAT
4728495 TTTTTA
1 TTTTTA
4728501 TTTTTAAAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (10 bp):
TTTTTAAAAT
Found at i:4729733 original size:21 final size:21
Alignment explanation
Indices: 4729704--4729747 Score: 79
Period size: 21 Copynumber: 2.1 Consensus size: 21
4729694 TGGATTAGTA
*
4729704 TTTTGTATGAATATTGTAATT
1 TTTTATATGAATATTGTAATT
4729725 TTTTATATGAATATTGTAATT
1 TTTTATATGAATATTGTAATT
4729746 TT
1 TT
4729748 GTGTTTGTAA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.30, C:0.00, G:0.11, T:0.59
Consensus pattern (21 bp):
TTTTATATGAATATTGTAATT
Found at i:4731272 original size:14 final size:15
Alignment explanation
Indices: 4731241--4731278 Score: 53
Period size: 14 Copynumber: 2.7 Consensus size: 15
4731231 GTTTGACAGT
*
4731241 AAAATG-TTTTTCGG
1 AAAATGATTTTTCGA
4731255 AAAATGATTTTT-GA
1 AAAATGATTTTTCGA
4731269 AAAATGATTT
1 AAAATGATTT
4731279 ACTAGAAAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
14 17 0.77
15 5 0.23
ACGTcount: A:0.39, C:0.03, G:0.16, T:0.42
Consensus pattern (15 bp):
AAAATGATTTTTCGA
Found at i:4737226 original size:25 final size:25
Alignment explanation
Indices: 4737177--4737227 Score: 61
Period size: 25 Copynumber: 2.0 Consensus size: 25
4737167 ATACTTTTAC
*
4737177 AAATATTAAATTATTTTTCTTTTCA
1 AAATATTAAATTATTTTTCTGTTCA
4737202 AAATAATTAAA-TA-TTTTCATGTTCA
1 AAAT-ATTAAATTATTTTTC-TGTTCA
4737227 A
1 A
4737228 TTAAAAGTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
24 5 0.22
25 12 0.52
26 6 0.26
ACGTcount: A:0.41, C:0.08, G:0.02, T:0.49
Consensus pattern (25 bp):
AAATATTAAATTATTTTTCTGTTCA
Found at i:4753708 original size:12 final size:13
Alignment explanation
Indices: 4753693--4753722 Score: 53
Period size: 12 Copynumber: 2.4 Consensus size: 13
4753683 ATGTACATAC
4753693 GTACGTACT-TAT
1 GTACGTACTGTAT
4753705 GTACGTACTGTAT
1 GTACGTACTGTAT
4753718 GTACG
1 GTACG
4753723 AAGATGATGT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 9 0.53
13 8 0.47
ACGTcount: A:0.23, C:0.17, G:0.23, T:0.37
Consensus pattern (13 bp):
GTACGTACTGTAT
Found at i:4761387 original size:411 final size:411
Alignment explanation
Indices: 4760620--4761449 Score: 1414
Period size: 411 Copynumber: 2.0 Consensus size: 411
4760610 TGACTCTAAT
* *
4760620 CTGAAGGTTTTCATTCTCAACTTCAAAATGAGCTGCCTTTGCTGAAACGTTATGATGATTAGAAG
1 CTGAAGGTTTTCATTCTCAACTTCAAAATGAGCTGCCTTCGCCGAAACGTTATGATGATTAGAAG
* ** *
4760685 TCATAGTCTCCAATTTTTCAGAAAGTTTATCCCTCTCAAGTGTAACTGATTGAAGGTCTGCCCCA
66 TCATAGTCTCCAATTTTTCAGAAAGTTGATCCCTCTCAAGCATAACTGATTGAAGATCTGCCCCA
4760750 AGATCAGCTACTCTCTTTTCTGACTCCTCCAAATCAGCAGCTAGTGACCCATAATAATTTTCAAG
131 AGATCAGCTACTCTCTTTTCTGACTCCTCCAAATCAGCAGCTAGTGACCCATAATAATTTTCAAG
* *
4760815 ATTATCAATCTTCTTCTGCAAAGAGTTTCTTTCATGATTAGCCTCTGTAATCGCCCTCCCGAACC
196 ATTATCAATCTTCTTCTGCAAAGAATTTCTTTCATGATTAGCCTCTGTAAACGCCCTCCCGAACC
*
4760880 ATTCAATCTTTTCTTCAGGTTCCATGGATTGCATTTGTGAAGGCATGTCGATTCCATCCAAAAGT
261 ATTCAATCTTTTCTTCAGGTTCCATGGATTGCATTTGTGAAGGCATGTCGATTCCATCCAAAAGC
*
4760945 TCCACCCATTTTTGCACCAAGTGGCTCCTTTCCATTAAGGATTGTTCCAACAGTTCATTTCGTTC
326 TCCACCCATTTTTGCAACAAGTGGCTCCTTTCCATTAAGGATTGTTCCAACAGTTCATTTCGTTC
* *
4761010 TGCCAACCTATAAATCTTGCC
391 TGCCAACCTATAAAACTTACC
4761031 CTGAAGGTTTTCATTCTCAACTTC-AAATCGAGCTGCCTTCGCCGAAA-GATTATGATGATTAGA
1 CTGAAGGTTTTCATTCTCAACTTCAAAAT-GAGCTGCCTTCGCCGAAACG-TTATGATGATTAGA
*
4761094 AGTCATAGTCTCCAATTTTTCAGAAAGTTGATCCCTCTCAAGCATAACTGATTGAAGATCTGCCT
64 AGTCATAGTCTCCAATTTTTCAGAAAGTTGATCCCTCTCAAGCATAACTGATTGAAGATCTGCCC
4761159 CAAGATCAGCTACTCTCTTTTCTGGAC-CCTCCAAATCAGCAGCTAGTGACCCATAATAATTTTC
129 CAAGATCAGCTACTCTCTTTTCT-GACTCCTCCAAATCAGCAGCTAGTGACCCATAATAATTTTC
* * *
4761223 AAGATTATCAATCTTCTTCTGCAAAGAATTTGTTTCATGATTAGCCTCTGTAAACGCCCTTCCTA
193 AAGATTATCAATCTTCTTCTGCAAAGAATTTCTTTCATGATTAGCCTCTGTAAACGCCCTCCCGA
* *
4761288 ACCATTCAATCTTTTCTTCAGGTTCCATGGATTGCATTTGTGAGGGCATGTTGATTCCATCCAAA
258 ACCATTCAATCTTTTCTTCAGGTTCCATGGATTGCATTTGTGAAGGCATGTCGATTCCATCCAAA
* * * *
4761353 AGCTCCTCCCATTTTTGCAACAAGTGGTTCCTTTCCATTAAGGATTGTTCCAGCATTTCATTTCG
323 AGCTCCACCCATTTTTGCAACAAGTGGCTCCTTTCCATTAAGGATTGTTCCAACAGTTCATTTCG
4761418 TTCTGCCAACCTATAAAACTTACC
388 TTCTGCCAACCTATAAAACTTACC
4761442 CTGAAGGT
1 CTGAAGGT
4761450 CCTCATATTT
Statistics
Matches: 394, Mismatches: 22, Indels: 6
0.93 0.05 0.01
Matches are distributed among these distances:
410 5 0.01
411 386 0.98
412 3 0.01
ACGTcount: A:0.26, C:0.25, G:0.15, T:0.34
Consensus pattern (411 bp):
CTGAAGGTTTTCATTCTCAACTTCAAAATGAGCTGCCTTCGCCGAAACGTTATGATGATTAGAAG
TCATAGTCTCCAATTTTTCAGAAAGTTGATCCCTCTCAAGCATAACTGATTGAAGATCTGCCCCA
AGATCAGCTACTCTCTTTTCTGACTCCTCCAAATCAGCAGCTAGTGACCCATAATAATTTTCAAG
ATTATCAATCTTCTTCTGCAAAGAATTTCTTTCATGATTAGCCTCTGTAAACGCCCTCCCGAACC
ATTCAATCTTTTCTTCAGGTTCCATGGATTGCATTTGTGAAGGCATGTCGATTCCATCCAAAAGC
TCCACCCATTTTTGCAACAAGTGGCTCCTTTCCATTAAGGATTGTTCCAACAGTTCATTTCGTTC
TGCCAACCTATAAAACTTACC
Found at i:4766783 original size:2 final size:2
Alignment explanation
Indices: 4766776--4766826 Score: 102
Period size: 2 Copynumber: 25.5 Consensus size: 2
4766766 GGCAAATTTG
4766776 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
4766818 AT AT AT AT A
1 AT AT AT AT A
4766827 ACTTGAAGGG
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 49 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:4779636 original size:13 final size:14
Alignment explanation
Indices: 4779618--4779649 Score: 57
Period size: 13 Copynumber: 2.4 Consensus size: 14
4779608 CTAGTTCATC
4779618 TATATTATT-TTTT
1 TATATTATTATTTT
4779631 TATATTATTATTTT
1 TATATTATTATTTT
4779645 TATAT
1 TATAT
4779650 ATAATACATC
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 9 0.50
14 9 0.50
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (14 bp):
TATATTATTATTTT
Found at i:4779641 original size:16 final size:16
Alignment explanation
Indices: 4779620--4779651 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
4779610 AGTTCATCTA
*
4779620 TATTATTTTTTTATAT
1 TATTATTTTTATATAT
4779636 TATTATTTTTATATAT
1 TATTATTTTTATATAT
4779652 AATACATCAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (16 bp):
TATTATTTTTATATAT
Found at i:4782857 original size:22 final size:22
Alignment explanation
Indices: 4782829--4782895 Score: 73
Period size: 22 Copynumber: 3.0 Consensus size: 22
4782819 CGCTCTCTGA
*
4782829 TTATTAGCACGTTAGTGCTCTC
1 TTATTAGCACATTAGTGCTCTC
*
4782851 TTATTAGCACATTTGTGCTCTCC
1 TTATTAGCACATTAGTGCTCT-C
** *
4782874 GCA-TAGCACTTTAGTGCTCTC
1 TTATTAGCACATTAGTGCTCTC
4782895 T
1 T
4782896 GTTAATCAGT
Statistics
Matches: 37, Mismatches: 7, Indels: 3
0.79 0.15 0.06
Matches are distributed among these distances:
21 1 0.03
22 34 0.92
23 2 0.05
ACGTcount: A:0.18, C:0.25, G:0.16, T:0.40
Consensus pattern (22 bp):
TTATTAGCACATTAGTGCTCTC
Found at i:4785594 original size:46 final size:46
Alignment explanation
Indices: 4785527--4785899 Score: 493
Period size: 46 Copynumber: 8.6 Consensus size: 46
4785517 TTTGAGTACT
* * * *
4785527 TCTGATCAAGAGATAAAGTGATAAGTGGTAGCTTTAGCTACACTGA
1 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCCTTAGCTACACTTA
4785573 TCTGATCAAGTGACAAAGTGATAA---GTA--C-T-G---CACTTA
1 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCCTTAGCTACACTTA
* * *
4785609 TCTGATCAAGAGACAAAGTGATAAGTGGTATCTTTAGCTACACTTA
1 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCCTTAGCTACACTTA
*
4785655 TCTGATCAAGTGAAAAAGTGATAAGTGGTAGCCTTAGCTACACTTA
1 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCCTTAGCTACACTTA
4785701 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCCTTAGCTACACTTA
1 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCCTTAGCTACACTTA
4785747 TCTGATCAAGTGACAAAGTGATAA---GTA--C-T-G---CACTTA
1 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCCTTAGCTACACTTA
4785783 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCCTTAGCTACACTTA
1 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCCTTAGCTACACTTA
4785829 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCCTTAGCTACACTTA
1 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCCTTAGCTACACTTA
* * *
4785875 TCT-AACCAGGGAC-AAGTGATAAGTG
1 TCTGATCAAGTGACAAAGTGATAAGTG
4785900 ATCATACGTA
Statistics
Matches: 293, Mismatches: 14, Indels: 42
0.84 0.04 0.12
Matches are distributed among these distances:
36 58 0.20
39 8 0.03
40 2 0.01
41 2 0.01
42 2 0.01
43 8 0.03
44 12 0.04
45 7 0.02
46 194 0.66
ACGTcount: A:0.34, C:0.16, G:0.22, T:0.28
Consensus pattern (46 bp):
TCTGATCAAGTGACAAAGTGATAAGTGGTAGCCTTAGCTACACTTA
Found at i:4785630 original size:82 final size:82
Alignment explanation
Indices: 4785527--4785854 Score: 494
Period size: 82 Copynumber: 3.9 Consensus size: 82
4785517 TTTGAGTACT
* * *
4785527 TCTGATCAAGAGATAAAGTGATAAGTGGTAGCTTTAGCTACACTGATCTGATCAAGTGACAAAGT
1 TCTGATCAAGAGACAAAGTGATAAGTGGTAGCCTTAGCTACACTTATCTGATCAAGTGACAAAGT
4785592 GATAAGTACTGCACTTA
66 GATAAGTACTGCACTTA
* * *
4785609 TCTGATCAAGAGACAAAGTGATAAGTGGTATCTTTAGCTACACTTATCTGATCAAGTGAAAAAGT
1 TCTGATCAAGAGACAAAGTGATAAGTGGTAGCCTTAGCTACACTTATCTGATCAAGTGACAAAGT
4785674 GATAAGTGGTAGCCTTAGCTACACTTA
66 GATAA---GTA--C-T-G---CACTTA
*
4785701 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCCTTAGCTACACTTATCTGATCAAGTGACAAAGT
1 TCTGATCAAGAGACAAAGTGATAAGTGGTAGCCTTAGCTACACTTATCTGATCAAGTGACAAAGT
4785766 GATAAGTACTGCACTTA
66 GATAAGTACTGCACTTA
*
4785783 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCCTTAGCTACACTTATCTGATCAAGTGACAAAGT
1 TCTGATCAAGAGACAAAGTGATAAGTGGTAGCCTTAGCTACACTTATCTGATCAAGTGACAAAGT
4785848 GATAAGT
66 GATAAGT
4785855 GGTAGCCTTA
Statistics
Matches: 228, Mismatches: 8, Indels: 20
0.89 0.03 0.08
Matches are distributed among these distances:
82 144 0.63
85 4 0.02
86 1 0.00
87 2 0.01
88 1 0.00
89 4 0.02
92 72 0.32
ACGTcount: A:0.35, C:0.16, G:0.21, T:0.28
Consensus pattern (82 bp):
TCTGATCAAGAGACAAAGTGATAAGTGGTAGCCTTAGCTACACTTATCTGATCAAGTGACAAAGT
GATAAGTACTGCACTTA
Found at i:4785781 original size:128 final size:126
Alignment explanation
Indices: 4785527--4785898 Score: 458
Period size: 128 Copynumber: 2.9 Consensus size: 126
4785517 TTTGAGTACT
* * * *
4785527 TCTGATCAAGAGATAAAGTGATAAGTGGTAGCTTTAGCTACACTGATCTGATCAAGTGACAAAGT
1 TCTGATCAAGTGAAAAAGTGATAAGTGGTAGCCTTAGCTACACTTATCTGATCAAGTGACAAAGT
* *
4785592 GATAA---GTA--C-T-G---CACTTATCTGATCAAGAGACAAAGTGATAAGTGGTATCTTTAGC
66 GATAAGTGGTAGCCTTAGCTACACTTATCT-AACAAGGGAC-AAGTGATAA---GTA-C--T-G-
4785647 TACACTTA
121 --CACTTA
4785655 TCTGATCAAGTGAAAAAGTGATAAGTGGTAGCCTTAGCTACACTTATCTGATCAAGTGACAAAGT
1 TCTGATCAAGTGAAAAAGTGATAAGTGGTAGCCTTAGCTACACTTATCTGATCAAGTGACAAAGT
* *
4785720 GATAAGTGGTAGCCTTAGCTACACTTATCTGATCAAGTGACAAAGTGATAAGTACTGCACTTA
66 GATAAGTGGTAGCCTTAGCTACACTTATCT-AACAAGGGAC-AAGTGATAAGTACTGCACTTA
*
4785783 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCCTTAGCTACACTTATCTGATCAAGTGACAAAGT
1 TCTGATCAAGTGAAAAAGTGATAAGTGGTAGCCTTAGCTACACTTATCTGATCAAGTGACAAAGT
*
4785848 GATAAGTGGTAGCCTTAGCTACACTTATCTAACCAGGGACAAGTGATAAGT
66 GATAAGTGGTAGCCTTAGCTACACTTATCTAACAAGGGACAAGTGATAAGT
4785899 GATCATACGT
Statistics
Matches: 225, Mismatches: 9, Indels: 22
0.88 0.04 0.09
Matches are distributed among these distances:
126 11 0.05
127 7 0.03
128 166 0.74
131 4 0.02
132 1 0.00
133 1 0.00
134 2 0.01
135 4 0.02
138 29 0.13
ACGTcount: A:0.34, C:0.16, G:0.22, T:0.28
Consensus pattern (126 bp):
TCTGATCAAGTGAAAAAGTGATAAGTGGTAGCCTTAGCTACACTTATCTGATCAAGTGACAAAGT
GATAAGTGGTAGCCTTAGCTACACTTATCTAACAAGGGACAAGTGATAAGTACTGCACTTA
Found at i:4785822 original size:174 final size:174
Alignment explanation
Indices: 4785527--4785899 Score: 633
Period size: 174 Copynumber: 2.2 Consensus size: 174
4785517 TTTGAGTACT
* *
4785527 TCTGATCAAGAGATAAAGTGATAAGTGGTAGCTTTAGCTACACTGATCTGATCAAGTGACAAAGT
1 TCTGATCAAGAGACAAAGTGATAAGTGGTAGCCTTAGCTACACTGATCTGATCAAGTGACAAAGT
* *
4785592 GATAAGTACTGCACTTATCTGATCAAGAGACAAAGTGATAAGTGGTATCTTTAGCTACACTTATC
66 GATAAGTACTGCACTTATCTGATCAAGAGACAAAGTGATAAGTGGTAGCCTTAGCTACACTTATC
4785657 TGATCAAGTGAAAAAGTGATAAGTGGTAGCCTTAGCTACACTTA
131 TGATCAAGTGAAAAAGTGATAAGTGGTAGCCTTAGCTACACTTA
* *
4785701 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCCTTAGCTACACTTATCTGATCAAGTGACAAAGT
1 TCTGATCAAGAGACAAAGTGATAAGTGGTAGCCTTAGCTACACTGATCTGATCAAGTGACAAAGT
*
4785766 GATAAGTACTGCACTTATCTGATCAAGTGACAAAGTGATAAGTGGTAGCCTTAGCTACACTTATC
66 GATAAGTACTGCACTTATCTGATCAAGAGACAAAGTGATAAGTGGTAGCCTTAGCTACACTTATC
*
4785831 TGATCAAGTGACAAAGTGATAAGTGGTAGCCTTAGCTACACTTA
131 TGATCAAGTGAAAAAGTGATAAGTGGTAGCCTTAGCTACACTTA
* * *
4785875 TCT-AACCAGGGAC-AAGTGATAAGTG
1 TCTGATCAAGAGACAAAGTGATAAGTG
4785900 ATCATACGTA
Statistics
Matches: 188, Mismatches: 11, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
172 12 0.06
173 7 0.04
174 169 0.90
ACGTcount: A:0.34, C:0.16, G:0.22, T:0.28
Consensus pattern (174 bp):
TCTGATCAAGAGACAAAGTGATAAGTGGTAGCCTTAGCTACACTGATCTGATCAAGTGACAAAGT
GATAAGTACTGCACTTATCTGATCAAGAGACAAAGTGATAAGTGGTAGCCTTAGCTACACTTATC
TGATCAAGTGAAAAAGTGATAAGTGGTAGCCTTAGCTACACTTA
Found at i:4787921 original size:29 final size:30
Alignment explanation
Indices: 4787863--4787917 Score: 87
Period size: 28 Copynumber: 1.9 Consensus size: 30
4787853 TTATATTTCA
*
4787863 AAACTATTATTATTTTTAATTAAAAATATT
1 AAACTATTATTATTTTAAATTAAAAATATT
4787893 AAACTATT-TTA-TTTAAATTAAAAAT
1 AAACTATTATTATTTTAAATTAAAAAT
4787918 TATTTTATGA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
28 13 0.54
29 3 0.12
30 8 0.33
ACGTcount: A:0.49, C:0.04, G:0.00, T:0.47
Consensus pattern (30 bp):
AAACTATTATTATTTTAAATTAAAAATATT
Found at i:4796593 original size:4 final size:4
Alignment explanation
Indices: 4796584--4796610 Score: 54
Period size: 4 Copynumber: 6.8 Consensus size: 4
4796574 ATCCGGTGGT
4796584 TTTC TTTC TTTC TTTC TTTC TTTC TTT
1 TTTC TTTC TTTC TTTC TTTC TTTC TTT
4796611 ACTACACTTC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 23 1.00
ACGTcount: A:0.00, C:0.22, G:0.00, T:0.78
Consensus pattern (4 bp):
TTTC
Found at i:4796642 original size:105 final size:101
Alignment explanation
Indices: 4796453--4796662 Score: 357
Period size: 105 Copynumber: 2.0 Consensus size: 101
4796443 CTCATCAAAC
*
4796453 AAGAATATTTATGGAATTTCATCCGGTGGTTTTCTTTCTTTCTTTCTTTCTTTACTACATTTCTC
1 AAGAATATTTATGGAATTTCATCCGGTGGTTTTCTTTCTTTCTTTCTTTCTTTACTACACTTCTC
*
4796518 TTGGAATTGATTTTAACCAACAGAAGAGAATGTGGA
66 TTGGAATTGATTTTAACCAACAGAAGAGAATGTGCA
4796554 AAGAATATTTATGGAATTTCATCCGGTGGTTTTCTTTCTTTCTTTCTTTCTTTCTTTACTACACT
1 AAGAATATTTATGGAATTTCATCCGGTGG---T-TTTCTTTCTTTCTTTCTTTCTTTACTACACT
*
4796619 TCTCTTGGCATTGATTTTAACCAACAGAAGAGAATGTGCA
62 TCTCTTGGAATTGATTTTAACCAACAGAAGAGAATGTGCA
4796659 AAGA
1 AAGA
4796663 GGATGGTGGA
Statistics
Matches: 102, Mismatches: 3, Indels: 4
0.94 0.03 0.04
Matches are distributed among these distances:
101 29 0.28
104 1 0.01
105 72 0.71
ACGTcount: A:0.26, C:0.16, G:0.15, T:0.43
Consensus pattern (101 bp):
AAGAATATTTATGGAATTTCATCCGGTGGTTTTCTTTCTTTCTTTCTTTCTTTACTACACTTCTC
TTGGAATTGATTTTAACCAACAGAAGAGAATGTGCA
Found at i:4811554 original size:2 final size:2
Alignment explanation
Indices: 4811549--4811595 Score: 94
Period size: 2 Copynumber: 23.5 Consensus size: 2
4811539 ACAAGCACAT
4811549 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
4811591 AG AG A
1 AG AG A
4811596 ATTTTTACAT
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 45 1.00
ACGTcount: A:0.51, C:0.00, G:0.49, T:0.00
Consensus pattern (2 bp):
AG
Found at i:4819533 original size:6 final size:6
Alignment explanation
Indices: 4819511--4819590 Score: 56
Period size: 6 Copynumber: 13.3 Consensus size: 6
4819501 CTGCCTTTGG
* * * *
4819511 CTCTGT CTTTTT CTCTGT CTCTGT CTCTGT CT-TTT GCTCTGC CTCTGT
1 CTCTGT CTCTGT CTCTGT CTCTGT CTCTGT CTCTGT -CTCTGT CTCTGT
* * **
4819559 ATCTGT CTTTTGT -TCTAC CTCTGT CTCTGT CT
1 CTCTGT C-TCTGT CTCTGT CTCTGT CTCTGT CT
4819591 TTTGCTGTGC
Statistics
Matches: 54, Mismatches: 16, Indels: 8
0.69 0.21 0.10
Matches are distributed among these distances:
5 4 0.07
6 45 0.83
7 5 0.09
ACGTcount: A:0.03, C:0.30, G:0.14, T:0.54
Consensus pattern (6 bp):
CTCTGT
Found at i:4819538 original size:24 final size:24
Alignment explanation
Indices: 4819499--4819634 Score: 164
Period size: 24 Copynumber: 5.7 Consensus size: 24
4819489 TTTGCTCTGC
* * *
4819499 CTCTGCCTTTGGCTCTGTCTTTTT
1 CTCTGCCTCTGTCTCTGTCTTTTG
*
4819523 CTCTGTCTCTGTCTCTGTCTTTTG
1 CTCTGCCTCTGTCTCTGTCTTTTG
*
4819547 CTCTGCCTCTGTATCTGTCTTTTG
1 CTCTGCCTCTGTCTCTGTCTTTTG
* *
4819571 TTCTACCTCTGTCTCTGTCTTTTG
1 CTCTGCCTCTGTCTCTGTCTTTTG
* * *
4819595 CTGTGCCTCCGTCTCTGCCTTTTG
1 CTCTGCCTCTGTCTCTGTCTTTTG
* *
4819619 GTCTGCCTCTGGCTCT
1 CTCTGCCTCTGTCTCT
4819635 TCCTCTATCT
Statistics
Matches: 94, Mismatches: 18, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
24 94 1.00
ACGTcount: A:0.01, C:0.32, G:0.18, T:0.49
Consensus pattern (24 bp):
CTCTGCCTCTGTCTCTGTCTTTTG
Found at i:4819558 original size:18 final size:18
Alignment explanation
Indices: 4819487--4819558 Score: 65
Period size: 18 Copynumber: 4.0 Consensus size: 18
4819477 CCGTCCCCGC
*
4819487 CTTTTGCTCTGCCTCTGC
1 CTTTTGCTCTGCCTCTGT
* * * *
4819505 CTTTGGCTCTGTCTTTTT
1 CTTTTGCTCTGCCTCTGT
* *
4819523 C-TCTGTCTCTGTCTCTGT
1 CTTTTG-CTCTGCCTCTGT
4819541 CTTTTGCTCTGCCTCTGT
1 CTTTTGCTCTGCCTCTGT
4819559 ATCTGTCTTT
Statistics
Matches: 41, Mismatches: 11, Indels: 4
0.73 0.20 0.07
Matches are distributed among these distances:
17 2 0.05
18 36 0.88
19 3 0.07
ACGTcount: A:0.00, C:0.32, G:0.17, T:0.51
Consensus pattern (18 bp):
CTTTTGCTCTGCCTCTGT
Found at i:4819646 original size:18 final size:18
Alignment explanation
Indices: 4819625--4819670 Score: 56
Period size: 18 Copynumber: 2.6 Consensus size: 18
4819615 TTTGGTCTGC
4819625 CTCTGGCTCTTCCTCTAT
1 CTCTGGCTCTTCCTCTAT
* * * *
4819643 CTCTGCCTTTTGCTCTTT
1 CTCTGGCTCTTCCTCTAT
4819661 CTCTGGCTCT
1 CTCTGGCTCT
4819671 GCGTCTAATC
Statistics
Matches: 22, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.02, C:0.37, G:0.13, T:0.48
Consensus pattern (18 bp):
CTCTGGCTCTTCCTCTAT
Found at i:4819670 original size:24 final size:24
Alignment explanation
Indices: 4819620--4819672 Score: 61
Period size: 24 Copynumber: 2.2 Consensus size: 24
4819610 TGCCTTTTGG
*
4819620 TCTGCCTCTGGCTCTTCCTCTATC
1 TCTGCCTCTGGCTCTTCCTCTAGC
* * * *
4819644 TCTGCCTTTTGCTCTTTCTCTGGC
1 TCTGCCTCTGGCTCTTCCTCTAGC
4819668 TCTGC
1 TCTGC
4819673 GTCTAATCCT
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.02, C:0.38, G:0.15, T:0.45
Consensus pattern (24 bp):
TCTGCCTCTGGCTCTTCCTCTAGC
Found at i:4826229 original size:42 final size:42
Alignment explanation
Indices: 4826182--4826268 Score: 165
Period size: 42 Copynumber: 2.1 Consensus size: 42
4826172 CTCTATAGGG
4826182 AGAGGCATATTGAAATATTAGTAGTCTGTTTGTAGTATCATT
1 AGAGGCATATTGAAATATTAGTAGTCTGTTTGTAGTATCATT
*
4826224 AGAGGCATATTGAAATCTTAGTAGTCTGTTTGTAGTATCATT
1 AGAGGCATATTGAAATATTAGTAGTCTGTTTGTAGTATCATT
4826266 AGA
1 AGA
4826269 TTATTGAAGC
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 44 1.00
ACGTcount: A:0.31, C:0.08, G:0.22, T:0.39
Consensus pattern (42 bp):
AGAGGCATATTGAAATATTAGTAGTCTGTTTGTAGTATCATT
Found at i:4844454 original size:2 final size:2
Alignment explanation
Indices: 4844445--4844477 Score: 59
Period size: 2 Copynumber: 17.0 Consensus size: 2
4844435 CTCTCTTTTT
4844445 TA TA -A TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
4844478 AATCGTGATA
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 29 0.97
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
TA
Found at i:4863493 original size:12 final size:12
Alignment explanation
Indices: 4863476--4863511 Score: 54
Period size: 12 Copynumber: 3.0 Consensus size: 12
4863466 ATAGTCGTAG
*
4863476 TCATCAAAATCA
1 TCATCATAATCA
*
4863488 TCATCATAACCA
1 TCATCATAATCA
4863500 TCATCATAATCA
1 TCATCATAATCA
4863512 ATTCCACAAT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.44, C:0.28, G:0.00, T:0.28
Consensus pattern (12 bp):
TCATCATAATCA
Found at i:4865059 original size:21 final size:23
Alignment explanation
Indices: 4865017--4865059 Score: 54
Period size: 21 Copynumber: 2.0 Consensus size: 23
4865007 GTTATTTGTT
* *
4865017 TATTATAATTATTTTTTTAATGA
1 TATTATAATTATTATTTGAATGA
4865040 TATTAT-A-TATTATTTGAATG
1 TATTATAATTATTATTTGAATG
4865060 TTAATACATT
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
21 11 0.61
22 1 0.06
23 6 0.33
ACGTcount: A:0.35, C:0.00, G:0.07, T:0.58
Consensus pattern (23 bp):
TATTATAATTATTATTTGAATGA
Found at i:4868006 original size:45 final size:46
Alignment explanation
Indices: 4867838--4868021 Score: 282
Period size: 46 Copynumber: 4.0 Consensus size: 46
4867828 CATGGCAAAG
* *
4867838 TGTGAAAAGTAGGTATGGTGTTTCGGTGAAGAAAACCATACTAAGT
1 TGTGAAAAGTAGGTATGGTGTTTCAGTGAAGAAAACCATACTGAGT
* *
4867884 TATGAAAAGTAGGTATGGTGTTTCGGTGAAGAAAACCATACTGAGT
1 TGTGAAAAGTAGGTATGGTGTTTCAGTGAAGAAAACCATACTGAGT
*
4867930 TGTGAAAAGTAGGTATGGTGTTTCAATGAAGAAAACCATACTGAGT
1 TGTGAAAAGTAGGTATGGTGTTTCAGTGAAGAAAACCATACTGAGT
* *
4867976 TGTGAAAA-TAGGTATGGTATTTCAAG-GAAGAAAAACATACTGAGT
1 TGTGAAAAGTAGGTATGGTGTTTC-AGTGAAGAAAACCATACTGAGT
4868021 T
1 T
4868022 ATAGCAATGT
Statistics
Matches: 129, Mismatches: 8, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
45 33 0.26
46 96 0.74
ACGTcount: A:0.37, C:0.08, G:0.27, T:0.28
Consensus pattern (46 bp):
TGTGAAAAGTAGGTATGGTGTTTCAGTGAAGAAAACCATACTGAGT
Found at i:4869714 original size:20 final size:20
Alignment explanation
Indices: 4869681--4869729 Score: 55
Period size: 20 Copynumber: 2.4 Consensus size: 20
4869671 ATACAACATT
4869681 TTAAAAATAAATAAATACAG-
1 TTAAAAATAAATAAA-ACAGA
**
4869701 TTAAAAATTTATAAAACAGAA
1 TTAAAAATAAATAAAACAG-A
4869722 TTAAAAAT
1 TTAAAAAT
4869730 GTAAAAAAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
19 4 0.16
20 13 0.52
21 8 0.32
ACGTcount: A:0.63, C:0.04, G:0.04, T:0.29
Consensus pattern (20 bp):
TTAAAAATAAATAAAACAGA
Found at i:4873478 original size:63 final size:63
Alignment explanation
Indices: 4873374--4873506 Score: 203
Period size: 63 Copynumber: 2.1 Consensus size: 63
4873364 AGGTGGTTTC
* * * * *
4873374 GATGAGTATGGGTTGGGTGAGATATCTCTGGAAGGCCTAGAGAGTTGGCTTAAAATTAATACT
1 GATGGGTATGGGTGGGGCGAGATATCACTGGAAGGACTAGAGAGTTGGCTTAAAATTAATACT
* *
4873437 GCTGGGTATGGGTGGGGCGAGATGTCACTGGAAGGACTAGAGAGTTGGCTTAAAATTAATACT
1 GATGGGTATGGGTGGGGCGAGATATCACTGGAAGGACTAGAGAGTTGGCTTAAAATTAATACT
4873500 GATGGGT
1 GATGGGT
4873507 CGTGCTGTGG
Statistics
Matches: 62, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
63 62 1.00
ACGTcount: A:0.27, C:0.10, G:0.35, T:0.28
Consensus pattern (63 bp):
GATGGGTATGGGTGGGGCGAGATATCACTGGAAGGACTAGAGAGTTGGCTTAAAATTAATACT
Found at i:4880927 original size:18 final size:18
Alignment explanation
Indices: 4880906--4880940 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
4880896 TAATATTATA
4880906 AAATAAAATAATTATTTC
1 AAATAAAATAATTATTTC
* *
4880924 AAATATAATTATTATTT
1 AAATAAAATAATTATTT
4880941 TTATCTGTAA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.51, C:0.03, G:0.00, T:0.46
Consensus pattern (18 bp):
AAATAAAATAATTATTTC
Found at i:4880999 original size:45 final size:47
Alignment explanation
Indices: 4880914--4881005 Score: 125
Period size: 48 Copynumber: 2.0 Consensus size: 47
4880904 TAAAATAAAA
* *
4880914 TAATTATTTCAAATATAATTATTATTTTTATCTGTAAAATATTTCAAT
1 TAATTATTTCAAATATAATTATTATTTATATATG-AAAATATTTCAAT
* *
4880962 TAATTATTTCAAATATCATTA-TGTTTATATATG-AAATATTTCAA
1 TAATTATTTCAAATATAATTATTATTTATATATGAAAATATTTCAA
4881006 ATAAACATAA
Statistics
Matches: 40, Mismatches: 4, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
45 11 0.28
47 9 0.22
48 20 0.50
ACGTcount: A:0.40, C:0.07, G:0.03, T:0.50
Consensus pattern (47 bp):
TAATTATTTCAAATATAATTATTATTTATATATGAAAATATTTCAAT
Found at i:4881123 original size:19 final size:20
Alignment explanation
Indices: 4881081--4881123 Score: 56
Period size: 19 Copynumber: 2.3 Consensus size: 20
4881071 TATTGCACAT
*
4881081 ATAAA-AATTATATTTACTA
1 ATAAATAATAATATTTACTA
4881100 A-AAATAATAATATTTA-TA
1 ATAAATAATAATATTTACTA
4881118 ATAAAT
1 ATAAAT
4881124 TATTTGATTT
Statistics
Matches: 21, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
18 6 0.29
19 15 0.71
ACGTcount: A:0.58, C:0.02, G:0.00, T:0.40
Consensus pattern (20 bp):
ATAAATAATAATATTTACTA
Found at i:4886610 original size:15 final size:15
Alignment explanation
Indices: 4886590--4886625 Score: 72
Period size: 15 Copynumber: 2.4 Consensus size: 15
4886580 AATTCTGACA
4886590 AATCATCATTTTCAG
1 AATCATCATTTTCAG
4886605 AATCATCATTTTCAG
1 AATCATCATTTTCAG
4886620 AATCAT
1 AATCAT
4886626 TGCGGTCGAC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.36, C:0.19, G:0.06, T:0.39
Consensus pattern (15 bp):
AATCATCATTTTCAG
Found at i:4892520 original size:26 final size:26
Alignment explanation
Indices: 4892491--4892543 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
4892481 AATCAATAAT
*
4892491 TCGGGGAAT-TAACACTTAGCAACCCC
1 TCGGGGAATCT-ACACTTACCAACCCC
*
4892517 TCGGGGAATCTGCACTTACCAACCCC
1 TCGGGGAATCTACACTTACCAACCCC
4892543 T
1 T
4892544 TTTTGATCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.34, G:0.19, T:0.21
Consensus pattern (26 bp):
TCGGGGAATCTACACTTACCAACCCC
Found at i:4892670 original size:19 final size:20
Alignment explanation
Indices: 4892633--4892670 Score: 51
Period size: 19 Copynumber: 1.9 Consensus size: 20
4892623 CGAGAACCTT
*
4892633 ATTTTACAACATTTTACCAA
1 ATTTTACAACATTTAACCAA
*
4892653 ATTTTTCAA-ATTTAACCA
1 ATTTTACAACATTTAACCA
4892671 CATTGTTGTA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
19 8 0.50
20 8 0.50
ACGTcount: A:0.39, C:0.18, G:0.00, T:0.42
Consensus pattern (20 bp):
ATTTTACAACATTTAACCAA
Found at i:4915485 original size:34 final size:35
Alignment explanation
Indices: 4915425--4915491 Score: 91
Period size: 34 Copynumber: 1.9 Consensus size: 35
4915415 CAAACACCAG
*
4915425 AAAATATTTTCCAGTAAATCATTTTACAGAAAAGT
1 AAAACATTTTCCAGTAAATCATTTTACAGAAAAGT
* * *
4915460 AAAACATTTTCCCG-AAATTATTTTACGGAAAA
1 AAAACATTTTCCAGTAAATCATTTTACAGAAAA
4915492 CATTTTACTG
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
34 16 0.57
35 12 0.43
ACGTcount: A:0.45, C:0.13, G:0.09, T:0.33
Consensus pattern (35 bp):
AAAACATTTTCCAGTAAATCATTTTACAGAAAAGT
Found at i:4917515 original size:3 final size:3
Alignment explanation
Indices: 4917507--4917568 Score: 115
Period size: 3 Copynumber: 20.3 Consensus size: 3
4917497 CTAAATAAGA
4917507 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
4917555 TAT TAT TAT ATAT T
1 TAT TAT TAT -TAT T
4917569 TACAACAAAG
Statistics
Matches: 58, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
3 55 0.95
4 3 0.05
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:4918136 original size:3 final size:3
Alignment explanation
Indices: 4918128--4918164 Score: 74
Period size: 3 Copynumber: 12.3 Consensus size: 3
4918118 AAGCTTATTT
4918128 TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA T
1 TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA T
4918165 ATATATATAC
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 34 1.00
ACGTcount: A:0.32, C:0.32, G:0.00, T:0.35
Consensus pattern (3 bp):
TCA
Found at i:4926187 original size:64 final size:64
Alignment explanation
Indices: 4926066--4926189 Score: 194
Period size: 64 Copynumber: 1.9 Consensus size: 64
4926056 TATCTATTTT
* ** * *
4926066 GAATGATGAAAAGGTTTAAATGTTCCAATATTGTTTGGGATGAGTGGAGCTATGTTGCTCCTGG
1 GAATGATGAAAAGGTTTAAATGTTCCAATATTGTTGGGGATGAGAAGAACTACGTTGCTCCTGG
*
4926130 GAATGATGAAAAGGTTTAAATGTTTCAATATTGTTGGGGATGAGAAGAACTACGTTGCTC
1 GAATGATGAAAAGGTTTAAATGTTCCAATATTGTTGGGGATGAGAAGAACTACGTTGCTC
4926190 TGACTCTGCA
Statistics
Matches: 54, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
64 54 1.00
ACGTcount: A:0.30, C:0.09, G:0.28, T:0.33
Consensus pattern (64 bp):
GAATGATGAAAAGGTTTAAATGTTCCAATATTGTTGGGGATGAGAAGAACTACGTTGCTCCTGG
Found at i:4932272 original size:30 final size:30
Alignment explanation
Indices: 4932238--4932298 Score: 113
Period size: 30 Copynumber: 2.0 Consensus size: 30
4932228 TAGGTTGTCA
4932238 ACAGTAAAAACTAGGTGATGTACAACTTTG
1 ACAGTAAAAACTAGGTGATGTACAACTTTG
*
4932268 ACAGTAAAAACTAGGTGATGTAGAACTTTG
1 ACAGTAAAAACTAGGTGATGTACAACTTTG
4932298 A
1 A
4932299 GAAACTGATA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.41, C:0.11, G:0.21, T:0.26
Consensus pattern (30 bp):
ACAGTAAAAACTAGGTGATGTACAACTTTG
Found at i:4936811 original size:20 final size:20
Alignment explanation
Indices: 4936778--4936819 Score: 66
Period size: 20 Copynumber: 2.1 Consensus size: 20
4936768 GCCAAGGTGG
*
4936778 AAAAAGCCTGATATTAGACT
1 AAAAAACCTGATATTAGACT
*
4936798 AAAAAACCTTATATTAGACT
1 AAAAAACCTGATATTAGACT
4936818 AA
1 AA
4936820 GTCTTGAAGT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.50, C:0.14, G:0.10, T:0.26
Consensus pattern (20 bp):
AAAAAACCTGATATTAGACT
Found at i:4937864 original size:12 final size:11
Alignment explanation
Indices: 4937843--4937869 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
4937833 CAATCACCAC
4937843 TTTTTCTTTTT
1 TTTTTCTTTTT
4937854 TTTTTCTTTTT
1 TTTTTCTTTTT
4937865 TTTTT
1 TTTTT
4937870 ACAGTTCTCC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.00, C:0.07, G:0.00, T:0.93
Consensus pattern (11 bp):
TTTTTCTTTTT
Found at i:4942715 original size:64 final size:64
Alignment explanation
Indices: 4942614--4942742 Score: 258
Period size: 64 Copynumber: 2.0 Consensus size: 64
4942604 CCCGCATCAA
4942614 ATTAATAAGAATCTTGCAAATGCAAACCGACATGGCATCTCTGTATTCCTGGGCTAGCACGTCT
1 ATTAATAAGAATCTTGCAAATGCAAACCGACATGGCATCTCTGTATTCCTGGGCTAGCACGTCT
4942678 ATTAATAAGAATCTTGCAAATGCAAACCGACATGGCATCTCTGTATTCCTGGGCTAGCACGTCT
1 ATTAATAAGAATCTTGCAAATGCAAACCGACATGGCATCTCTGTATTCCTGGGCTAGCACGTCT
4942742 A
1 A
4942743 AGTACAAGCT
Statistics
Matches: 65, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
64 65 1.00
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (64 bp):
ATTAATAAGAATCTTGCAAATGCAAACCGACATGGCATCTCTGTATTCCTGGGCTAGCACGTCT
Found at i:4955819 original size:24 final size:24
Alignment explanation
Indices: 4955792--4955838 Score: 85
Period size: 24 Copynumber: 2.0 Consensus size: 24
4955782 ACCAAAAATT
4955792 TATTTTAAAAATAAAAAATAAAAG
1 TATTTTAAAAATAAAAAATAAAAG
*
4955816 TATTTTAAAATTAAAAAATAAAA
1 TATTTTAAAAATAAAAAATAAAA
4955839 AAATATATTT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.66, C:0.00, G:0.02, T:0.32
Consensus pattern (24 bp):
TATTTTAAAAATAAAAAATAAAAG
Found at i:4966966 original size:35 final size:35
Alignment explanation
Indices: 4966927--4967030 Score: 181
Period size: 35 Copynumber: 3.0 Consensus size: 35
4966917 ATATGTTATC
*
4966927 TCATTATTACCATTACATTTGAATCCAAATACATA
1 TCATTATTATCATTACATTTGAATCCAAATACATA
4966962 TCATTATTATCATTACATTTGAATCCAAATACATA
1 TCATTATTATCATTACATTTGAATCCAAATACATA
* *
4966997 TCACTATTATCATTACATTTGAATCCAAACACAT
1 TCATTATTATCATTACATTTGAATCCAAATACAT
4967031 TAATTAATCT
Statistics
Matches: 66, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
35 66 1.00
ACGTcount: A:0.39, C:0.20, G:0.03, T:0.38
Consensus pattern (35 bp):
TCATTATTATCATTACATTTGAATCCAAATACATA
Found at i:4987118 original size:2 final size:2
Alignment explanation
Indices: 4987111--4987137 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
4987101 TTATAATTAT
4987111 TC TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC TC T
4987138 TTTCTTTTCT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52
Consensus pattern (2 bp):
TC
Found at i:4996408 original size:127 final size:126
Alignment explanation
Indices: 4995936--4996475 Score: 816
Period size: 126 Copynumber: 4.3 Consensus size: 126
4995926 TAATTTAAAA
* * * * * * * *
4995936 AAGCTCCCACGTAGA-GGATCTTCTGCTACAATAGCTACTGAAAAAATAATTTCGAGAAAACGTT
1 AAGCTCCCACGTGGACGCA-CTTTTGCTACAGTAGCTCCTAAAAAAATAATTTCGAGTAGACGTT
*
4996000 TCTGAGCAAATAGTGTCAAAAATGCTTTAAGCAAGATGCTTTGTCAGCAAAAGTACTGAAAG
65 TCTGAGCAAATAGTGTCAAAAACGCTTTAAGCAAGATGCTTTGTCAGCAAAAGTACTGAAAG
4996062 AAGCTCCCACGTGGACGCACTTTTGCTACAGTAGCTCCTAAAAAAATAATTTCGAGTAGACGTTT
1 AAGCTCCCACGTGGACGCACTTTTGCTACAGTAGCTCCTAAAAAAATAATTTCGAGTAGACGTTT
* *
4996127 CTGAGCAAATAGTGTCAAAAACGCTTTAAGTAAGATGTTTTGTCAGCAAAAGTACTGAAAG
66 CTGAGCAAATAGTGTCAAAAACGCTTTAAGCAAGATGCTTTGTCAGCAAAAGTACTGAAAG
* *
4996188 AAGATCCCACGTGGACGC-GTTCTTGCTACAGTAGCTCCTAAAAAAATAATTTCGAGTAGACGTT
1 AAGCTCCCACGTGGACGCACTT-TTGCTACAGTAGCTCCTAAAAAAATAATTTCGAGTAGACGTT
*
4996252 TCTGAGCAAATAGTGTCAAAAACGCTTTAAGCATA-ATGCTTTGTCAGCAAAAGTACTAAAAG
65 TCTGAGCAAATAGTGTCAAAAACGCTTTAAGCA-AGATGCTTTGTCAGCAAAAGTACTGAAAG
* *
4996314 AAGCTCCTACGTGGACGCACTTTTGTTACAGTAGCTCCTGAAAAAAATAATTTCGAGTAGACGTT
1 AAGCTCCCACGTGGACGCACTTTTGCTACAGTAGCTCCT-AAAAAAATAATTTCGAGTAGACGTT
* * * * *
4996379 TCTGAGAAAATAGTGTCAAAAACGCTTTAAACAGGATACTTTGTCAGCAAAAGCACTGAAAG
65 TCTGAGCAAATAGTGTCAAAAACGCTTTAAGCAAGATGCTTTGTCAGCAAAAGTACTGAAAG
* *
4996441 AAGCTCCCACGTGGACACGCTTTTGCTACAGTAGC
1 AAGCTCCCACGTGGACGCACTTTTGCTACAGTAGC
4996476 GCATGTTTGG
Statistics
Matches: 378, Mismatches: 30, Indels: 11
0.90 0.07 0.03
Matches are distributed among these distances:
125 2 0.01
126 260 0.69
127 116 0.31
ACGTcount: A:0.35, C:0.19, G:0.20, T:0.26
Consensus pattern (126 bp):
AAGCTCCCACGTGGACGCACTTTTGCTACAGTAGCTCCTAAAAAAATAATTTCGAGTAGACGTTT
CTGAGCAAATAGTGTCAAAAACGCTTTAAGCAAGATGCTTTGTCAGCAAAAGTACTGAAAG
Found at i:4998481 original size:14 final size:15
Alignment explanation
Indices: 4998462--4998493 Score: 57
Period size: 14 Copynumber: 2.2 Consensus size: 15
4998452 ATAATAAAGT
4998462 AAAAAAAAAGAAA-A
1 AAAAAAAAAGAAACA
4998476 AAAAAAAAAGAAACA
1 AAAAAAAAAGAAACA
4998491 AAA
1 AAA
4998494 TAGCAAACGA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 13 0.76
15 4 0.24
ACGTcount: A:0.91, C:0.03, G:0.06, T:0.00
Consensus pattern (15 bp):
AAAAAAAAAGAAACA
Found at i:5002381 original size:21 final size:21
Alignment explanation
Indices: 5002351--5002397 Score: 60
Period size: 21 Copynumber: 2.2 Consensus size: 21
5002341 GCGGGGGTTG
*
5002351 TGGTTGCTCCGGCA-GGGATTC
1 TGGTTCCTCCGGCAGGGGA-TC
*
5002372 TGGTTCCTCCGGTAGGGGATC
1 TGGTTCCTCCGGCAGGGGATC
5002393 TGGTT
1 TGGTT
5002398 GTCGGTGTTG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
21 19 0.83
22 4 0.17
ACGTcount: A:0.09, C:0.21, G:0.38, T:0.32
Consensus pattern (21 bp):
TGGTTCCTCCGGCAGGGGATC
Found at i:5003315 original size:7 final size:7
Alignment explanation
Indices: 5003305--5003337 Score: 66
Period size: 7 Copynumber: 4.7 Consensus size: 7
5003295 CATAATACAT
5003305 AATACTA
1 AATACTA
5003312 AATACTA
1 AATACTA
5003319 AATACTA
1 AATACTA
5003326 AATACTA
1 AATACTA
5003333 AATAC
1 AATAC
5003338 CAATCGACTA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 26 1.00
ACGTcount: A:0.58, C:0.15, G:0.00, T:0.27
Consensus pattern (7 bp):
AATACTA
Found at i:5014346 original size:29 final size:28
Alignment explanation
Indices: 5014270--5014355 Score: 84
Period size: 29 Copynumber: 3.0 Consensus size: 28
5014260 TAGCGCGCTC
* * *
5014270 TTTGTTTTGTTATTGCACTTTGGTGCTAT
1 TTTGTTTTG-GATTACACTTTAGTGCTAT
*
5014299 TATGTTTT-GATTAAGCACTTTAGTGCTAT
1 TTTGTTTTGGATT-A-CACTTTAGTGCTAT
*
5014328 TTTGTTTTGGCATTACACTTCAGTGCTA
1 TTTGTTTTGG-ATTACACTTTAGTGCTA
5014356 CTCTATTCTG
Statistics
Matches: 47, Mismatches: 6, Indels: 8
0.77 0.10 0.13
Matches are distributed among these distances:
27 3 0.06
29 39 0.83
30 2 0.04
31 3 0.06
ACGTcount: A:0.17, C:0.13, G:0.19, T:0.51
Consensus pattern (28 bp):
TTTGTTTTGGATTACACTTTAGTGCTAT
Found at i:5014503 original size:24 final size:24
Alignment explanation
Indices: 5014471--5014517 Score: 85
Period size: 24 Copynumber: 2.0 Consensus size: 24
5014461 CGAATGATGT
*
5014471 GACGCGATTAAGTGTAAGTAATTG
1 GACGAGATTAAGTGTAAGTAATTG
5014495 GACGAGATTAAGTGTAAGTAATT
1 GACGAGATTAAGTGTAAGTAATT
5014518 AGAATGATAG
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.36, C:0.06, G:0.28, T:0.30
Consensus pattern (24 bp):
GACGAGATTAAGTGTAAGTAATTG
Found at i:5019950 original size:17 final size:17
Alignment explanation
Indices: 5019930--5019983 Score: 51
Period size: 17 Copynumber: 3.2 Consensus size: 17
5019920 TAATAAAATA
5019930 ATTATAATTATAATTAT
1 ATTATAATTATAATTAT
5019947 ATTAT-ATTAATAATT-T
1 ATTATAATT-ATAATTAT
*
5019963 GTTATGAATGT-TAATTAT
1 ATTAT-AAT-TATAATTAT
5019981 ATT
1 ATT
5019984 TTTAATTTAA
Statistics
Matches: 30, Mismatches: 2, Indels: 9
0.73 0.05 0.22
Matches are distributed among these distances:
16 8 0.27
17 16 0.53
18 5 0.17
19 1 0.03
ACGTcount: A:0.41, C:0.00, G:0.06, T:0.54
Consensus pattern (17 bp):
ATTATAATTATAATTAT
Found at i:5020529 original size:13 final size:13
Alignment explanation
Indices: 5020511--5020539 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
5020501 GATAAAAAAC
5020511 TTTCAACAATTTA
1 TTTCAACAATTTA
5020524 TTTCAACAATTTA
1 TTTCAACAATTTA
5020537 TTT
1 TTT
5020540 AATTTATTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.34, C:0.14, G:0.00, T:0.52
Consensus pattern (13 bp):
TTTCAACAATTTA
Found at i:5025477 original size:21 final size:21
Alignment explanation
Indices: 5025436--5025477 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
5025426 AACCGTCCAT
* * *
5025436 TAACAAAATTACAGGCTCAAA
1 TAACAAAAGTACAAGCCCAAA
5025457 TAACAAAAGTACAAGCCCAAA
1 TAACAAAAGTACAAGCCCAAA
5025478 ATACAAAGAA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.55, C:0.21, G:0.10, T:0.14
Consensus pattern (21 bp):
TAACAAAAGTACAAGCCCAAA
Found at i:5025839 original size:4 final size:4
Alignment explanation
Indices: 5025830--5025957 Score: 247
Period size: 4 Copynumber: 32.0 Consensus size: 4
5025820 ACGAATATAG
*
5025830 CATA CATA CATA CATA CGTA CATA CATA CATA CATA CATA CATA CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
5025878 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
5025926 CATA CATA CATA CATA CATA CATA CATA CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA
5025958 TTCAAAAATA
Statistics
Matches: 122, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
4 122 1.00
ACGTcount: A:0.49, C:0.25, G:0.01, T:0.25
Consensus pattern (4 bp):
CATA
Found at i:5027297 original size:33 final size:35
Alignment explanation
Indices: 5027225--5027301 Score: 88
Period size: 35 Copynumber: 2.3 Consensus size: 35
5027215 ATTGACAGAT
* *
5027225 AAGACCATGGTTGGACCATGACAATGTTTAAATGT
1 AAGACCATAGTTGGACCATGACAATGTTTAAATGA
* *
5027260 AAGACCATAGTTGGGCTATGAC-AT-TTT-AATGAA
1 AAGACCATAGTTGGACCATGACAATGTTTAAATG-A
5027293 AAGACCATA
1 AAGACCATA
5027302 ACTGGGTTAT
Statistics
Matches: 37, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
32 4 0.11
33 12 0.32
34 2 0.05
35 19 0.51
ACGTcount: A:0.38, C:0.14, G:0.21, T:0.27
Consensus pattern (35 bp):
AAGACCATAGTTGGACCATGACAATGTTTAAATGA
Found at i:5041935 original size:27 final size:29
Alignment explanation
Indices: 5041903--5041967 Score: 73
Period size: 30 Copynumber: 2.3 Consensus size: 29
5041893 ACCTTTGAGC
**
5041903 CTAAATTTT-GAAATTTGAAAA-ATA-GGA
1 CTAAATTTTAGAAA-TAAAAAATATATGGA
5041930 CTAAATTCTTAGAAATAAAAAATATATGGA
1 CTAAATT-TTAGAAATAAAAAATATATGGA
5041960 CTAAATTT
1 CTAAATTT
5041968 CAATTTTACA
Statistics
Matches: 32, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
27 7 0.22
28 7 0.22
29 8 0.25
30 10 0.31
ACGTcount: A:0.49, C:0.06, G:0.11, T:0.34
Consensus pattern (29 bp):
CTAAATTTTAGAAATAAAAAATATATGGA
Found at i:5043527 original size:29 final size:29
Alignment explanation
Indices: 5043494--5043557 Score: 76
Period size: 29 Copynumber: 2.2 Consensus size: 29
5043484 ATATAACATC
*
5043494 AATTTT-AACAGTTTAATAACTTAAATAAA
1 AATTTTAAACAATTTAATAA-TTAAATAAA
* * *
5043523 AATTTTAAATAATTTAATAATTAAATTAT
1 AATTTTAAACAATTTAATAATTAAATAAA
5043552 AATTTT
1 AATTTT
5043558 TTAATTAAGT
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
29 19 0.63
30 11 0.37
ACGTcount: A:0.50, C:0.03, G:0.02, T:0.45
Consensus pattern (29 bp):
AATTTTAAACAATTTAATAATTAAATAAA
Found at i:5046295 original size:2 final size:2
Alignment explanation
Indices: 5046288--5046331 Score: 88
Period size: 2 Copynumber: 22.0 Consensus size: 2
5046278 TGCTTTATTC
5046288 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
5046330 AT
1 AT
5046332 CAGGTATACC
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 42 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:5050835 original size:45 final size:45
Alignment explanation
Indices: 5050776--5050928 Score: 234
Period size: 45 Copynumber: 3.4 Consensus size: 45
5050766 CACCAGTATA
* * *
5050776 CAGTAATCAGTAACAGTAACAGTATTCAACACACAAAGTGCTGAAC
1 CAGTAA-CAGTAACAGTAACAGTATTCGACACACAAAGTGCCGAAT
* *
5050822 CTGTAACAGTAACAGTAACAGTATTCGACACACAAAGTGCCGAGT
1 CAGTAACAGTAACAGTAACAGTATTCGACACACAAAGTGCCGAAT
* *
5050867 CGGTAACAGTAACAGTAACAGTATTCGACACACAAAGTACCGAAT
1 CAGTAACAGTAACAGTAACAGTATTCGACACACAAAGTGCCGAAT
5050912 CAGTAACAGTAACAGTA
1 CAGTAACAGTAACAGTA
5050929 GTCGGCACAT
Statistics
Matches: 98, Mismatches: 9, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
45 93 0.95
46 5 0.05
ACGTcount: A:0.42, C:0.22, G:0.18, T:0.19
Consensus pattern (45 bp):
CAGTAACAGTAACAGTAACAGTATTCGACACACAAAGTGCCGAAT
Found at i:5050873 original size:39 final size:39
Alignment explanation
Indices: 5050782--5050955 Score: 154
Period size: 45 Copynumber: 4.2 Consensus size: 39
5050772 TATACAGTAA
* *
5050782 TCAGTAACAGTAACAGTATTCAACACACAAAGTGCTGAACCTG
1 TCAGTAACAGTAACAGTATTCGACACACAAAGTGCCG-A---G
5050825 TAACAGTAACAGTAACAGTATTCGACACACAAAGTGCCGAGTCGG
1 T--CAGTAACAGTAACAGTATTCGACACACAAAGTGCCGA----G
* *
5050870 TAACAGTAACAGTAACAGTATTCGACACACAAAGTACCGAA
1 T--CAGTAACAGTAACAGTATTCGACACACAAAGTGCCGAG
* * *
5050911 TCAGTAACAGTAACAGTAGTCGGCACA-TAAGTGCCTGA-
1 TCAGTAACAGTAACAGTATTCGACACACAAAGTGCC-GAG
5050949 TCAGTAA
1 TCAGTAA
5050956 GCCGGCAAAT
Statistics
Matches: 117, Mismatches: 10, Indels: 13
0.84 0.07 0.09
Matches are distributed among these distances:
38 13 0.11
39 26 0.22
41 1 0.01
43 1 0.01
44 1 0.01
45 75 0.64
ACGTcount: A:0.40, C:0.22, G:0.19, T:0.20
Consensus pattern (39 bp):
TCAGTAACAGTAACAGTATTCGACACACAAAGTGCCGAG
Found at i:5052852 original size:46 final size:46
Alignment explanation
Indices: 5052785--5052877 Score: 152
Period size: 46 Copynumber: 2.0 Consensus size: 46
5052775 CATGGCAAAG
*
5052785 TGTGAAATGTAGGTATGATA-TTCCAGTGAAGAAAACCATACTGAGT
1 TGTGAAAAGTAGGTATGATATTTCCA-TGAAGAAAACCATACTGAGT
*
5052831 TGTGAAAAGTAGGTATGATATTTCCATGAAGAAAACCATATTGAGT
1 TGTGAAAAGTAGGTATGATATTTCCATGAAGAAAACCATACTGAGT
5052877 T
1 T
5052878 ATAGCCTTGT
Statistics
Matches: 44, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
46 39 0.89
47 5 0.11
ACGTcount: A:0.38, C:0.10, G:0.23, T:0.30
Consensus pattern (46 bp):
TGTGAAAAGTAGGTATGATATTTCCATGAAGAAAACCATACTGAGT
Found at i:5055165 original size:30 final size:28
Alignment explanation
Indices: 5055126--5055187 Score: 88
Period size: 28 Copynumber: 2.1 Consensus size: 28
5055116 ATGGATTTAA
*
5055126 ATTACTTATTATTTAAGTAAATAGTTATTT
1 ATTACTTATTA-TTAAGTAAA-AGATATTT
*
5055156 ATTATTTATTATTAAGTAAAAGATATTT
1 ATTACTTATTATTAAGTAAAAGATATTT
5055184 ATTA
1 ATTA
5055188 ATTAAATAAT
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
28 11 0.37
29 9 0.30
30 10 0.33
ACGTcount: A:0.40, C:0.02, G:0.06, T:0.52
Consensus pattern (28 bp):
ATTACTTATTATTAAGTAAAAGATATTT
Found at i:5056341 original size:21 final size:21
Alignment explanation
Indices: 5056315--5056376 Score: 61
Period size: 21 Copynumber: 3.0 Consensus size: 21
5056305 TTTGCCGATC
5056315 AGGCACTATATGTGTCGTATT
1 AGGCACTATATGTGTCGTATT
* ** *
5056336 AGGCACAACGTGTGTCGTTTT
1 AGGCACTATATGTGTCGTATT
* * *
5056357 AGGTACTTTATGTGTTGTAT
1 AGGCACTATATGTGTCGTAT
5056377 ACTGCTTCTG
Statistics
Matches: 30, Mismatches: 11, Indels: 0
0.73 0.27 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.21, C:0.13, G:0.26, T:0.40
Consensus pattern (21 bp):
AGGCACTATATGTGTCGTATT
Found at i:5060860 original size:6 final size:6
Alignment explanation
Indices: 5060851--5060893 Score: 61
Period size: 6 Copynumber: 7.3 Consensus size: 6
5060841 TTATTTTTAT
* *
5060851 TTAATA TTAATA TTAATA TAAAT- TTAATA TTAAGA TTAATA TT
1 TTAATA TTAATA TTAATA TTAATA TTAATA TTAATA TTAATA TT
5060894 CTATTATATT
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
5 4 0.12
6 28 0.88
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (6 bp):
TTAATA
Found at i:5060875 original size:23 final size:23
Alignment explanation
Indices: 5060849--5060892 Score: 79
Period size: 23 Copynumber: 1.9 Consensus size: 23
5060839 AATTATTTTT
*
5060849 ATTTAATATTAATATTAATATAA
1 ATTTAATATTAAGATTAATATAA
5060872 ATTTAATATTAAGATTAATAT
1 ATTTAATATTAAGATTAATAT
5060893 TCTATTATAT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (23 bp):
ATTTAATATTAAGATTAATATAA
Found at i:5061149 original size:24 final size:24
Alignment explanation
Indices: 5061122--5061170 Score: 64
Period size: 24 Copynumber: 2.0 Consensus size: 24
5061112 TGATAAATTT
*
5061122 TAAAGAAAAAT-TATAATTGAGTGA
1 TAAA-AAAAATCTATAATTGAATGA
*
5061146 TAAAAGAAATCTATAATTGAATGA
1 TAAAAAAAATCTATAATTGAATGA
5061170 T
1 T
5061171 GAATTTAATA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
23 5 0.23
24 17 0.77
ACGTcount: A:0.53, C:0.02, G:0.14, T:0.31
Consensus pattern (24 bp):
TAAAAAAAATCTATAATTGAATGA
Found at i:5064100 original size:13 final size:13
Alignment explanation
Indices: 5064062--5064101 Score: 62
Period size: 13 Copynumber: 3.1 Consensus size: 13
5064052 TTTAAACCAA
*
5064062 ACTTTTCAAAAGA
1 ACTTTTCAAAAGC
*
5064075 ACTTCTCAAAAGC
1 ACTTTTCAAAAGC
5064088 ACTTTTCAAAAGC
1 ACTTTTCAAAAGC
5064101 A
1 A
5064102 ATGAAGATCT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
13 24 1.00
ACGTcount: A:0.42, C:0.23, G:0.07, T:0.28
Consensus pattern (13 bp):
ACTTTTCAAAAGC
Found at i:5082545 original size:53 final size:57
Alignment explanation
Indices: 5082436--5082560 Score: 161
Period size: 57 Copynumber: 2.3 Consensus size: 57
5082426 AAGATTAAAA
5082436 TATTTATTTTTATATATATTTAAATTTTATATATTATTATTTCTTGTCAATAATATT
1 TATTTATTTTTATATATATTTAAATTTTATATATTATTATTTCTTGTCAATAATATT
* * *
5082493 TTTTTATTTTTATATATATTTTAAA-TTTAT-TATTA-TATTT-TTTTGAAT-ATATT
1 TATTTATTTTTATATATA-TTTAAATTTTATATATTATTATTTCTTGTCAATAATATT
* *
5082546 TATATATTTATATAT
1 TATTTATTTTTATAT
5082561 TTCTTTGAAT
Statistics
Matches: 61, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
53 17 0.28
54 6 0.10
55 5 0.08
56 5 0.08
57 22 0.36
58 6 0.10
ACGTcount: A:0.33, C:0.02, G:0.02, T:0.64
Consensus pattern (57 bp):
TATTTATTTTTATATATATTTAAATTTTATATATTATTATTTCTTGTCAATAATATT
Found at i:5082548 original size:23 final size:23
Alignment explanation
Indices: 5082497--5082554 Score: 59
Period size: 22 Copynumber: 2.6 Consensus size: 23
5082487 AATATTTTTT
* *
5082497 TATTT-TTATATATATTTTAAATT
1 TATTTATTATAT-TTTTTTAAATA
*
5082520 TA-TTATTATATTTTTTTGAATA
1 TATTTATTATATTTTTTTAAATA
5082542 TATTTA-TATATTT
1 TATTTATTATATTT
5082555 ATATATTTCT
Statistics
Matches: 30, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
22 19 0.63
23 11 0.37
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.66
Consensus pattern (23 bp):
TATTTATTATATTTTTTTAAATA
Found at i:5087388 original size:12 final size:12
Alignment explanation
Indices: 5087371--5087395 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
5087361 GGTGTTCATT
5087371 CGGTTAACCGAC
1 CGGTTAACCGAC
5087383 CGGTTAACCGAC
1 CGGTTAACCGAC
5087395 C
1 C
5087396 CGAAATAACA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.24, C:0.36, G:0.24, T:0.16
Consensus pattern (12 bp):
CGGTTAACCGAC
Found at i:5087570 original size:9 final size:9
Alignment explanation
Indices: 5087556--5087604 Score: 62
Period size: 9 Copynumber: 5.4 Consensus size: 9
5087546 TTTGGTTAAA
5087556 AATTAACCG
1 AATTAACCG
5087565 AATTAACCG
1 AATTAACCG
* *
5087574 AATTACCCA
1 AATTAACCG
*
5087583 AATTACCCG
1 AATTAACCG
*
5087592 AATTAACCA
1 AATTAACCG
5087601 AATT
1 AATT
5087605 GAATCACTAC
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
9 35 1.00
ACGTcount: A:0.45, C:0.24, G:0.06, T:0.24
Consensus pattern (9 bp):
AATTAACCG
Found at i:5087586 original size:18 final size:18
Alignment explanation
Indices: 5087556--5087604 Score: 71
Period size: 18 Copynumber: 2.7 Consensus size: 18
5087546 TTTGGTTAAA
*
5087556 AATTAACCGAATTAACCG
1 AATTAACCAAATTAACCG
* *
5087574 AATTACCCAAATTACCCG
1 AATTAACCAAATTAACCG
5087592 AATTAACCAAATT
1 AATTAACCAAATT
5087605 GAATCACTAC
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
18 27 1.00
ACGTcount: A:0.45, C:0.24, G:0.06, T:0.24
Consensus pattern (18 bp):
AATTAACCAAATTAACCG
Found at i:5091670 original size:60 final size:59
Alignment explanation
Indices: 5091606--5091752 Score: 188
Period size: 59 Copynumber: 2.5 Consensus size: 59
5091596 TTTTATTTTT
* * * *
5091606 TATTTTTTATCTTTAATTGGGAAGGATAGGAAA-ATGTTATTATCATTTATTACACTTATC
1 TATTTTTTAACTTTAATTGGGAAGGAAAGGAAATA-G-GATTACCATTTATTACACTTATC
* * ** *
5091666 TATTTTTTAACTTTAATTGGGGAGGAAATGACTTAGGATTACCATTTATTACACTTATT
1 TATTTTTTAACTTTAATTGGGAAGGAAAGGAAATAGGATTACCATTTATTACACTTATC
5091725 TATTTTTTAACTTTAATTGGGAAGGAAA
1 TATTTTTTAACTTTAATTGGGAAGGAAA
5091753 TGACTTTTTA
Statistics
Matches: 76, Mismatches: 10, Indels: 3
0.85 0.11 0.03
Matches are distributed among these distances:
59 47 0.62
60 28 0.37
61 1 0.01
ACGTcount: A:0.32, C:0.08, G:0.15, T:0.45
Consensus pattern (59 bp):
TATTTTTTAACTTTAATTGGGAAGGAAAGGAAATAGGATTACCATTTATTACACTTATC
Found at i:5091721 original size:59 final size:59
Alignment explanation
Indices: 5091644--5091758 Score: 203
Period size: 59 Copynumber: 1.9 Consensus size: 59
5091634 GGAAAATGTT
* *
5091644 ATTATCATTTATTACACTTATCTATTTTTTAACTTTAATTGGGGAGGAAATGACTTAGG
1 ATTACCATTTATTACACTTATCTATTTTTTAACTTTAATTGGGAAGGAAATGACTTAGG
*
5091703 ATTACCATTTATTACACTTATTTATTTTTTAACTTTAATTGGGAAGGAAATGACTT
1 ATTACCATTTATTACACTTATCTATTTTTTAACTTTAATTGGGAAGGAAATGACTT
5091759 TTTATAGAAA
Statistics
Matches: 53, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
59 53 1.00
ACGTcount: A:0.31, C:0.10, G:0.13, T:0.45
Consensus pattern (59 bp):
ATTACCATTTATTACACTTATCTATTTTTTAACTTTAATTGGGAAGGAAATGACTTAGG
Found at i:5091827 original size:82 final size:82
Alignment explanation
Indices: 5091698--5091906 Score: 336
Period size: 82 Copynumber: 2.6 Consensus size: 82
5091688 AGGAAATGAC
5091698 TTAGGATTACCATTTATTACAC----TTATTTATTTTTTAACTTTAATTGGGAAGGAAATGACTT
1 TTAGGATTACCATTTATTACACTTTTTTATTTATTTTTTAACTTTAATTGGGAAGGAAATGACTT
5091759 TTTATAGAAAAATATTA
66 TTTATAGAAAAATATTA
* * *
5091776 TTAGGATTGCCATTTATTACACTTTTTTTTTTATTTTTTAACTTTAATTGGGAAGGAAATTACTT
1 TTAGGATTACCATTTATTACACTTTTTTATTTATTTTTTAACTTTAATTGGGAAGGAAATGACTT
*
5091841 TTTATAGAAAAATGTTA
66 TTTATAGAAAAATATTA
* *
5091858 TTAGGATTACCATTTATTACACTTTTTTACTTATTTTCTAACTTTAATT
1 TTAGGATTACCATTTATTACACTTTTTTATTTATTTTTTAACTTTAATT
5091907 TACTTTTTTT
Statistics
Matches: 119, Mismatches: 8, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
78 21 0.18
82 98 0.82
ACGTcount: A:0.32, C:0.09, G:0.10, T:0.49
Consensus pattern (82 bp):
TTAGGATTACCATTTATTACACTTTTTTATTTATTTTTTAACTTTAATTGGGAAGGAAATGACTT
TTTATAGAAAAATATTA
Found at i:5094385 original size:42 final size:42
Alignment explanation
Indices: 5094306--5094385 Score: 99
Period size: 42 Copynumber: 1.9 Consensus size: 42
5094296 ACGTCATTGC
* ** **
5094306 TAAAATATTAAAAAAATATTGTTTTTTTTATGCTTTTTTATA
1 TAAAATATGAAAAAAATATTGTTTTTTGAATAATTTTTTATA
*
5094348 TAAAATATGAAAAAAATATT-TTTTTTGAATAAATTTTT
1 TAAAATATGAAAAAAATATTGTTTTTTGAATAATTTTTT
5094386 GTATGTAATT
Statistics
Matches: 32, Mismatches: 6, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
41 13 0.41
42 19 0.59
ACGTcount: A:0.42, C:0.01, G:0.05, T:0.51
Consensus pattern (42 bp):
TAAAATATGAAAAAAATATTGTTTTTTGAATAATTTTTTATA
Found at i:5094990 original size:52 final size:51
Alignment explanation
Indices: 5094912--5095022 Score: 168
Period size: 52 Copynumber: 2.1 Consensus size: 51
5094902 ATGCTTACGT
* *
5094912 CTATCAAAGCTCTATTGCATTACAATGAATCAAACATACTGTTATTATTTCA
1 CTATC-AAGCTCCATTACATTACAATGAATCAAACATACTGTTATTATTTCA
*
5094964 CTATCAAGTCTCCATTACATTACAATGAATCAAACATGCTGTTATTATTTCA
1 CTATCAAG-CTCCATTACATTACAATGAATCAAACATACTGTTATTATTTCA
*
5095016 CTGTCAA
1 CTATCAA
5095023 AGCTTTATGT
Statistics
Matches: 54, Mismatches: 4, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
51 3 0.06
52 51 0.94
ACGTcount: A:0.35, C:0.21, G:0.08, T:0.36
Consensus pattern (51 bp):
CTATCAAGCTCCATTACATTACAATGAATCAAACATACTGTTATTATTTCA
Found at i:5097273 original size:3 final size:3
Alignment explanation
Indices: 5097265--5097294 Score: 60
Period size: 3 Copynumber: 10.0 Consensus size: 3
5097255 TACAAGCAAT
5097265 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA
1 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA
5097295 TGAGGCTAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (3 bp):
GAA
Found at i:5129291 original size:28 final size:26
Alignment explanation
Indices: 5129254--5129305 Score: 68
Period size: 28 Copynumber: 1.9 Consensus size: 26
5129244 TGTTAAGTTC
5129254 AAGTAACAAATTAGAATAAAAAAAATTA
1 AAGTAACAAATT-GAA-AAAAAAAATTA
* *
5129282 AAGTACCAAATTTAAAAAAAAAAT
1 AAGTAACAAATTGAAAAAAAAAAT
5129306 CAAATTTAAG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 9 0.41
27 2 0.09
28 11 0.50
ACGTcount: A:0.67, C:0.06, G:0.06, T:0.21
Consensus pattern (26 bp):
AAGTAACAAATTGAAAAAAAAAATTA
Found at i:5132403 original size:24 final size:24
Alignment explanation
Indices: 5132375--5132426 Score: 59
Period size: 24 Copynumber: 2.2 Consensus size: 24
5132365 TTTCTAGAAG
* **
5132375 ATTTAATATTTATGAGTATAATAT
1 ATTTAACATTTATGAACATAATAT
* *
5132399 ATTTAGCATTTATTAACATAATAT
1 ATTTAACATTTATGAACATAATAT
5132423 ATTT
1 ATTT
5132427 GACTTTGACT
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.40, C:0.04, G:0.06, T:0.50
Consensus pattern (24 bp):
ATTTAACATTTATGAACATAATAT
Found at i:5158231 original size:20 final size:20
Alignment explanation
Indices: 5158208--5158255 Score: 69
Period size: 20 Copynumber: 2.4 Consensus size: 20
5158198 TTTAGATATT
* *
5158208 TTGGTAAATCTATATAAAAA
1 TTGGTAAATCAATACAAAAA
*
5158228 TTGGTAAATCAATACAAATA
1 TTGGTAAATCAATACAAAAA
5158248 TTGGTAAA
1 TTGGTAAA
5158256 GTCTTAGATA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.48, C:0.06, G:0.12, T:0.33
Consensus pattern (20 bp):
TTGGTAAATCAATACAAAAA
Found at i:5158395 original size:20 final size:19
Alignment explanation
Indices: 5158365--5158403 Score: 60
Period size: 20 Copynumber: 2.0 Consensus size: 19
5158355 ATAGGGTTAG
5158365 AAAATTTGGAAATATTGGT
1 AAAATTTGGAAATATTGGT
*
5158384 AAAATCTTGGAAATTTTGGT
1 AAAAT-TTGGAAATATTGGT
5158404 GAAGTCTCAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 5 0.28
20 13 0.72
ACGTcount: A:0.38, C:0.03, G:0.21, T:0.38
Consensus pattern (19 bp):
AAAATTTGGAAATATTGGT
Found at i:5158467 original size:20 final size:20
Alignment explanation
Indices: 5158444--5158505 Score: 52
Period size: 20 Copynumber: 3.1 Consensus size: 20
5158434 AAATTTTGAC
5158444 AAATTGTTAGATATATTGGT
1 AAATTGTTAGATATATTGGT
** * * *
5158464 AAATCCTTAGAAATAGTAGT
1 AAATTGTTAGATATATTGGT
* * *
5158484 AAATTGTCAAATATTTTGGT
1 AAATTGTTAGATATATTGGT
5158504 AA
1 AA
5158506 GTCCTTAAAA
Statistics
Matches: 29, Mismatches: 13, Indels: 0
0.69 0.31 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.40, C:0.05, G:0.16, T:0.39
Consensus pattern (20 bp):
AAATTGTTAGATATATTGGT
Found at i:5158488 original size:40 final size:40
Alignment explanation
Indices: 5158444--5158601 Score: 118
Period size: 40 Copynumber: 3.8 Consensus size: 40
5158434 AAATTTTGAC
*
5158444 AAATTGTTAGATATATTGGTAAATCCTTAGAAATAGTAGT
1 AAATCGTTAGATATATTGGTAAATCCTTAGAAATAGTAGT
* * * * * * *
5158484 AAATTGTCAAATATTTTGGTAAGTCCTTAAAAATTTTGGTAAATGGT
1 AAATCGTTAGATATATTGGTAAATCCTTAGAAA---TAGT--A--GT
* ** * * *
5158531 AAATCATTAGATATATTGGTAAATTGTTAGAAATATTGGA
1 AAATCGTTAGATATATTGGTAAATCCTTAGAAATAGTAGT
*
5158571 AAATCGTTAGATATATTGGTAAATCATTAGA
1 AAATCGTTAGATATATTGGTAAATCCTTAGA
5158602 TACTTTGGTA
Statistics
Matches: 89, Mismatches: 22, Indels: 14
0.71 0.18 0.11
Matches are distributed among these distances:
40 57 0.64
43 3 0.03
44 2 0.02
45 1 0.01
47 26 0.29
ACGTcount: A:0.40, C:0.05, G:0.17, T:0.38
Consensus pattern (40 bp):
AAATCGTTAGATATATTGGTAAATCCTTAGAAATAGTAGT
Done.