Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr09 ID=Chr09-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 70713020
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 1142373 characters in sequence are not A, C, G, or T
File 106 of 226
Found at i:36447103 original size:19 final size:19
Alignment explanation
Indices: 36447079--36447120 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
36447069 GGTCGAGTTT
*
36447079 GGGGAGCTGTTAGGGATTA
1 GGGGAGATGTTAGGGATTA
* *
36447098 GGGGAGATTTTAGGGATTT
1 GGGGAGATGTTAGGGATTA
36447117 GGGG
1 GGGG
36447121 GGAGAAAGAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.19, C:0.02, G:0.50, T:0.29
Consensus pattern (19 bp):
GGGGAGATGTTAGGGATTA
Found at i:36447626 original size:73 final size:73
Alignment explanation
Indices: 36447549--36447945 Score: 242
Period size: 73 Copynumber: 5.4 Consensus size: 73
36447539 ATAATGTTGC
*
36447549 GGCGTTTTAAGTAAAGCGCCACTAAATATAAGATCAAACGATGTCGTTTCCCCAACATTTAACTC
1 GGCGTTTCAAGTAAAGCGCCACTAAATATAAGATCAAACGATGTCGTTTCCCCAACATTTAACTC
36447614 AATCTTGT
66 AATCTTGT
** * * *** ** ***
36447622 GGCGTTTCCAAACAAA-CGCCACT-AATACCATTGA-CAAAACGACAACACTTCGGTAAACA--T
1 GGCGTTT-CAAGTAAAGCGCCACTAAATA-TA-AGATC-AAACGATGTCGTTTC-CCCAACATTT
* * *
36447682 AAATACAATTTTGC
61 AACT-CAATCTTGT
* *
36447696 GGCGTTTCATGTAAAGCGCCACTAAATATAAGATCAAACGATGTCGTTTCCCCAAAATTTAACTC
1 GGCGTTTCAAGTAAAGCGCCACTAAATATAAGATCAAACGATGTCGTTTCCCCAACATTTAACTC
*
36447761 AAGCTTGT
66 AATCTTGT
** * * * *** * ***
36447769 GGCGTTTCCAAACAAA-CGCCACT-AATACCATTGATAAAACGACAACATTTCGATAAACA--TA
1 GGCGTTT-CAAGTAAAGCGCCACTAAATA-TA-AGATCAAACGATGTCGTTTC-CCCAACATTTA
* * *
36447830 AATACAATTTTGC
62 ACT-CAATCTTGT
* *
36447843 GGCGTTT-AATGTAAAGCGCCACTAAATATAAGATAAAACGATGTCGTTTCCCCAACATTTAACG
1 GGCGTTTCAA-GTAAAGCGCCACTAAATATAAGATCAAACGATGTCGTTTCCCCAACATTTAACT
*
36447907 CAAACTTGT
65 CAATCTTGT
**
36447916 GGCGTTTCCAAACAAA-CGCCACTAAA-ATAA
1 GGCGTTT-CAAGTAAAGCGCCACTAAATATAA
36447946 AACATATAAA
Statistics
Matches: 231, Mismatches: 70, Indels: 47
0.66 0.20 0.14
Matches are distributed among these distances:
72 21 0.09
73 103 0.45
74 90 0.39
75 17 0.07
ACGTcount: A:0.37, C:0.23, G:0.14, T:0.26
Consensus pattern (73 bp):
GGCGTTTCAAGTAAAGCGCCACTAAATATAAGATCAAACGATGTCGTTTCCCCAACATTTAACTC
AATCTTGT
Found at i:36447701 original size:74 final size:74
Alignment explanation
Indices: 36447613--36447849 Score: 198
Period size: 74 Copynumber: 3.2 Consensus size: 74
36447603 ACATTTAACT
* * *
36447613 CAATCTTGTGGCGTTTCCAAACAAACGCCACTAATACCATTGACAAAACGACAACACTTCGGTAA
1 CAATCTTGCGGCGTTTCCAAACAAACGCCACTAATACCATTGACAAAACGACAACATTTCGATAA
36447678 ACATAAATA
66 ACATAAATA
* *** * * *** *
36447687 CAATTTTGCGGCGTTT-CATGTAAAGCGCCACTAA-A-TATAAGATC-AAACGATGTCGTTTCCC
1 CAATCTTGCGGCGTTTCCAAACAAA-CGCCACTAATACCAT-TGA-CAAAACGACAACATTT--C
* ** *
36447748 CA-AAATTTAACT-
61 GATAAACATAAATA
* * *
36447760 CAAGCTTGTGGCGTTTCCAAACAAACGCCACTAATACCATTGATAAAACGACAACATTTCGATAA
1 CAATCTTGCGGCGTTTCCAAACAAACGCCACTAATACCATTGACAAAACGACAACATTTCGATAA
36447825 ACATAAATA
66 ACATAAATA
*
36447834 CAATTTTGCGGCGTTT
1 CAATCTTGCGGCGTTT
36447850 AATGTAAAGC
Statistics
Matches: 115, Mismatches: 37, Indels: 22
0.66 0.21 0.13
Matches are distributed among these distances:
72 4 0.03
73 46 0.40
74 62 0.54
75 3 0.03
ACGTcount: A:0.37, C:0.23, G:0.14, T:0.26
Consensus pattern (74 bp):
CAATCTTGCGGCGTTTCCAAACAAACGCCACTAATACCATTGACAAAACGACAACATTTCGATAA
ACATAAATA
Found at i:36447710 original size:147 final size:147
Alignment explanation
Indices: 36447545--36447940 Score: 695
Period size: 147 Copynumber: 2.7 Consensus size: 147
36447535 TAGAATAATG
36447545 TTGCGGCGTTTTAA-GTAAAGCGCCACTAAATATAAGATCAAACGATGTCGTTTCCCCAACATTT
1 TTGCGGCG-TTTAATGTAAAGCGCCACTAAATATAAGATCAAACGATGTCGTTTCCCCAACATTT
*
36447609 AACTCAATCTTGTGGCGTTTCCAAACAAACGCCACTAATACCATTGACAAAACGACAACACTTCG
65 AACTCAAACTTGTGGCGTTTCCAAACAAACGCCACTAATACCATTGACAAAACGACAACACTTCG
*
36447674 GTAAACATAAATACAATT
130 ATAAACATAAATACAATT
* *
36447692 TTGCGGCGTTTCATGTAAAGCGCCACTAAATATAAGATCAAACGATGTCGTTTCCCCAAAATTTA
1 TTGCGGCGTTTAATGTAAAGCGCCACTAAATATAAGATCAAACGATGTCGTTTCCCCAACATTTA
* * *
36447757 ACTCAAGCTTGTGGCGTTTCCAAACAAACGCCACTAATACCATTGATAAAACGACAACATTTCGA
66 ACTCAAACTTGTGGCGTTTCCAAACAAACGCCACTAATACCATTGACAAAACGACAACACTTCGA
36447822 TAAACATAAATACAATT
131 TAAACATAAATACAATT
*
36447839 TTGCGGCGTTTAATGTAAAGCGCCACTAAATATAAGATAAAACGATGTCGTTTCCCCAACATTTA
1 TTGCGGCGTTTAATGTAAAGCGCCACTAAATATAAGATCAAACGATGTCGTTTCCCCAACATTTA
*
36447904 ACGCAAACTTGTGGCGTTTCCAAACAAACGCCACTAA
66 ACTCAAACTTGTGGCGTTTCCAAACAAACGCCACTAA
36447941 AATAAAACAT
Statistics
Matches: 237, Mismatches: 11, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
146 4 0.02
147 233 0.98
ACGTcount: A:0.36, C:0.23, G:0.14, T:0.26
Consensus pattern (147 bp):
TTGCGGCGTTTAATGTAAAGCGCCACTAAATATAAGATCAAACGATGTCGTTTCCCCAACATTTA
ACTCAAACTTGTGGCGTTTCCAAACAAACGCCACTAATACCATTGACAAAACGACAACACTTCGA
TAAACATAAATACAATT
Found at i:36449493 original size:12 final size:12
Alignment explanation
Indices: 36449476--36449501 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
36449466 TTTGTTATTC
36449476 AAACGCCGCTAA
1 AAACGCCGCTAA
36449488 AAACGCCGCTAA
1 AAACGCCGCTAA
36449500 AA
1 AA
36449502 TCCTGTTTTG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.46, C:0.31, G:0.15, T:0.08
Consensus pattern (12 bp):
AAACGCCGCTAA
Found at i:36454553 original size:21 final size:21
Alignment explanation
Indices: 36454529--36454569 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
36454519 AATTATGTGT
* *
36454529 TTTTCAATTTTATTTTATAAA
1 TTTTCAATATTATTTGATAAA
*
36454550 TTTTTAATATTATTTGATAA
1 TTTTCAATATTATTTGATAA
36454570 GGTAGGAAAG
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.34, C:0.02, G:0.02, T:0.61
Consensus pattern (21 bp):
TTTTCAATATTATTTGATAAA
Found at i:36454693 original size:22 final size:22
Alignment explanation
Indices: 36454663--36454705 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
36454653 ACACCAAAAC
* * *
36454663 AGGCTTTTAGCGGCGCTTTTTT
1 AGGCCTTTAGCAGCACTTTTTT
36454685 AGGCCTTTAGCAGCACTTTTT
1 AGGCCTTTAGCAGCACTTTTT
36454706 AGCACCACTA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.14, C:0.21, G:0.23, T:0.42
Consensus pattern (22 bp):
AGGCCTTTAGCAGCACTTTTTT
Found at i:36454820 original size:43 final size:43
Alignment explanation
Indices: 36454780--36454973 Score: 266
Period size: 43 Copynumber: 4.5 Consensus size: 43
36454770 CGCTAAAGGT
* * *
36454780 CATGACCTTTAGCGGCACTTTTCCCACAAATGCCACTAAAGAC
1 CATGACCTTTAGCGGCGCTTTTCCCACAAACGCCACTATAGAC
* *
36454823 CAGGACCTTTAGCGGCGC-TGTCCTCACAAACGCCACTATAGAC
1 CATGACCTTTAGCGGCGCTTTTCC-CACAAACGCCACTATAGAC
** *
36454866 CATGACCTTTAGCGGCGCTTTTGTCACAAACGCCGCTATAGAC
1 CATGACCTTTAGCGGCGCTTTTCCCACAAACGCCACTATAGAC
*
36454909 CATGGA-CTTTAGCGGCGCTTTTCCCACAAACGCCGCTATAGAC
1 CAT-GACCTTTAGCGGCGCTTTTCCCACAAACGCCACTATAGAC
*
36454952 CATGGCCTTTAGCGGCGCTTTT
1 CATGACCTTTAGCGGCGCTTTT
36454974 GTCATAAACC
Statistics
Matches: 134, Mismatches: 13, Indels: 8
0.86 0.08 0.05
Matches are distributed among these distances:
42 5 0.04
43 125 0.93
44 4 0.03
ACGTcount: A:0.24, C:0.32, G:0.20, T:0.24
Consensus pattern (43 bp):
CATGACCTTTAGCGGCGCTTTTCCCACAAACGCCACTATAGAC
Found at i:36455721 original size:15 final size:15
Alignment explanation
Indices: 36455701--36455729 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
36455691 GTCCATTATA
36455701 GTGATTACCTGAATC
1 GTGATTACCTGAATC
36455716 GTGATTACCTGAAT
1 GTGATTACCTGAAT
36455730 AATACAAGCT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.28, C:0.17, G:0.21, T:0.34
Consensus pattern (15 bp):
GTGATTACCTGAATC
Found at i:36459152 original size:40 final size:39
Alignment explanation
Indices: 36459065--36459181 Score: 137
Period size: 40 Copynumber: 2.9 Consensus size: 39
36459055 GCGCTTTCTG
* **
36459065 AAAAACGCCGCTAATGCTTTTTTTTAGCGGC-TTTTTCC
1 AAAAGCGCCGCTAATGCTGATTTTTAGCGGCGTTTTTCC
* **
36459103 AAAATGCGCCGCTAATGCTCGATCTTTAGCGGCGTTTTTGT
1 AAAA-GCGCCGCTAATGCT-GATTTTTAGCGGCGTTTTTCC
*
36459144 AAAAGCGCCGCTAATGCTTGATTTTTAGTGGCGTTTTT
1 AAAAGCGCCGCTAATGC-TGATTTTTAGCGGCGTTTTT
36459182 TGTCCAAACA
Statistics
Matches: 67, Mismatches: 8, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
38 4 0.06
39 13 0.19
40 40 0.60
41 10 0.15
ACGTcount: A:0.21, C:0.21, G:0.21, T:0.38
Consensus pattern (39 bp):
AAAAGCGCCGCTAATGCTGATTTTTAGCGGCGTTTTTCC
Found at i:36459196 original size:41 final size:40
Alignment explanation
Indices: 36459087--36459198 Score: 111
Period size: 40 Copynumber: 2.8 Consensus size: 40
36459077 AATGCTTTTT
** *
36459087 TTTAGCGGC-TTTTTCCAAAATGCGCCGCTAATGCTCGATC
1 TTTAGCGGCGTTTTTGTAAAA-GCACCGCTAATGCTCGATC
* * *
36459127 TTTAGCGGCGTTTTTGTAAAAGCGCCGCTAATGCTTGATT
1 TTTAGCGGCGTTTTTGTAAAAGCACCGCTAATGCTCGATC
* *
36459167 TTTAGTGGCGTTTTTTGTCCAAA-CACCGCTAA
1 TTTAGCGGCG-TTTTTGT-AAAAGCACCGCTAA
36459199 AAGCCTATTT
Statistics
Matches: 62, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
40 35 0.56
41 24 0.39
42 3 0.05
ACGTcount: A:0.21, C:0.22, G:0.21, T:0.36
Consensus pattern (40 bp):
TTTAGCGGCGTTTTTGTAAAAGCACCGCTAATGCTCGATC
Found at i:36466093 original size:44 final size:44
Alignment explanation
Indices: 36465954--36466581 Score: 347
Period size: 44 Copynumber: 14.2 Consensus size: 44
36465944 CTGGGGGACG
* * * * *
36465954 AGATTCGTGGTTTTAGTCTATTCCACTGCAACATCAGGGAGATA
1 AGATTTGTGATTTTAATCTACTCCACTGCAACTTCAGGGAGATA
* * * *
36465998 AGACTTGCTATGATAGATTTAATCTGAC-CTACTACAACTTCAGAGG-TATA
1 AGA-TT--TGTGAT---TTTAATCT-ACTCCACTGCAACTTCAG-GGAGATA
* * * *
36466048 GGATTTATCATTTTAATCCACTCCACTGCAACTTCAGGGAGATA
1 AGATTTGTGATTTTAATCTACTCCACTGCAACTTCAGGGAGATA
* ** * * * * *
36466092 GGATTAAT-AGCTTAAATCTACTCCATTGCAAATTCAGGTAGATA
1 AGATTTGTGA-TTTTAATCTACTCCACTGCAACTTCAGGGAGATA
* * * * * *
36466136 AGGTTTGTTATCTTCAGTCTGCTCCACTACAACTTCAGGGAGATA
1 AGATTTGTGAT-TTTAATCTACTCCACTGCAACTTCAGGGAGATA
* * * * * * * *
36466181 AGACTTGTCATGGTGTGATCCACTCTACTGCAACTTTAGAGAGATA
1 AGATTTGTGAT--TTTAATCTACTCCACTGCAACTTCAGGGAGATA
* * ** * *
36466227 AGATCTGTCATTTTAATCCGCTTCACTGCAACTTTAGGGAGATA
1 AGATTTGTGATTTTAATCTACTCCACTGCAACTTCAGGGAGATA
*** * * * **
36466271 AGA-TTG-GA-TGCGATCTGCTCTACTGTAACTTCAGATAGATA
1 AGATTTGTGATTTTAATCTACTCCACTGCAACTTCAGGGAGATA
* * * *
36466312 AGATCTGTGGTTTTAATCCACTCCACTGCAACTTCAGAGAGATA
1 AGATTTGTGATTTTAATCTACTCCACTGCAACTTCAGGGAGATA
* * * * * *
36466356 GGACTAGTAACTTTAATCTAATCCACTGCAACTTCAGGGAGATA
1 AGATTTGTGATTTTAATCTACTCCACTGCAACTTCAGGGAGATA
*** * * * *
36466400 AGA-TTG-GA-TGCGATCTGCTCTACTGCAATTTCAGAGAGATA
1 AGATTTGTGATTTTAATCTACTCCACTGCAACTTCAGGGAGATA
* * *
36466441 AGATCTGTGGTTTTAATCCACTCCACTGCAACTTCAGGGAGATA
1 AGATTTGTGATTTTAATCTACTCCACTGCAACTTCAGGGAGATA
* * * * * * * *
36466485 GGACTAGTAACTTCAATCTGCTCTACTGCAACTTCAGGGAGATA
1 AGATTTGTGATTTTAATCTACTCCACTGCAACTTCAGGGAGATA
** * *
36466529 AGATTTGTTGGCTTTAATCTTCTCCACTGCAACTTTAGGGAGATA
1 AGATTTG-TGATTTTAATCTACTCCACTGCAACTTCAGGGAGATA
36466574 AGATTTGT
1 AGATTTGT
36466582 CATATTCGAT
Statistics
Matches: 434, Mismatches: 129, Indels: 42
0.72 0.21 0.07
Matches are distributed among these distances:
41 54 0.12
42 6 0.01
43 11 0.03
44 219 0.50
45 75 0.17
46 32 0.07
47 8 0.02
49 2 0.00
50 24 0.06
51 3 0.01
ACGTcount: A:0.29, C:0.20, G:0.20, T:0.32
Consensus pattern (44 bp):
AGATTTGTGATTTTAATCTACTCCACTGCAACTTCAGGGAGATA
Found at i:36466271 original size:90 final size:86
Alignment explanation
Indices: 36466026--36466360 Score: 239
Period size: 85 Copynumber: 3.8 Consensus size: 86
36466016 TTAATCTGAC
* * * *
36466026 CTACTACAACTTCAGAG-GTATAGGATTTATCATTTTAATCCACTCCACTGCAACTTCAGGGAGA
1 CTACTGCAACTTCAGAGAG-ATAAGATCTGTCATTTTAATCCACTCCACTGCAACTTCAGGGAGA
* * * *
36466090 TAGGA-TT-AATAGCTTAAATCTACT
65 TAAGACTTGGAT-GC---GATCCACT
* * * * * * * * ** *
36466114 CCATTGCAAATTCAG-GTAGATAAGGTTTGTTATCTTCAGTCTGCTCCACTACAACTTCAGGGAG
1 CTACTGCAACTTCAGAG-AGATAAGATCTGTCAT-TTTAATCCACTCCACTGCAACTTCAGGGAG
* *
36466178 ATAAGACTTGTCATGGTGTGATCCACT
64 ATAAGACTTG----GATGCGATCCACT
* * * *
36466205 CTACTGCAACTTTAGAGAGATAAGATCTGTCATTTTAATCCGCTTCACTGCAACTTTAGGGAGAT
1 CTACTGCAACTTCAGAGAGATAAGATCTGTCATTTTAATCCACTCCACTGCAACTTCAGGGAGAT
**
36466270 AAGA-TTGGATGCGATCTGCT
66 AAGACTTGGATGCGATCCACT
* * ** *
36466290 CTACTGTAACTTCAGATAGATAAGATCTGTGGTTTTAATCCACTCCACTGCAACTTCAGAGAGAT
1 CTACTGCAACTTCAGAGAGATAAGATCTGTCATTTTAATCCACTCCACTGCAACTTCAGGGAGAT
*
36466355 AGGACT
66 AAGACT
36466361 AGTAACTTTA
Statistics
Matches: 190, Mismatches: 46, Indels: 24
0.73 0.18 0.09
Matches are distributed among these distances:
85 68 0.36
86 1 0.01
87 1 0.01
88 21 0.11
89 34 0.18
90 32 0.17
91 30 0.16
92 1 0.01
94 1 0.01
95 1 0.01
ACGTcount: A:0.30, C:0.20, G:0.19, T:0.31
Consensus pattern (86 bp):
CTACTGCAACTTCAGAGAGATAAGATCTGTCATTTTAATCCACTCCACTGCAACTTCAGGGAGAT
AAGACTTGGATGCGATCCACT
Found at i:36466351 original size:129 final size:129
Alignment explanation
Indices: 36466058--36466533 Score: 521
Period size: 129 Copynumber: 3.6 Consensus size: 129
36466048 GGATTTATCA
* * * * * * * *
36466058 TTTTAATCCACTCCACTGCAACTTCAGGGAGATAGGATTAATAGCTTAAATCTACTCCATTGCAA
1 TTTTAATCCACTCCACTGCAACTTCAGAGAGATAGGACTAGTAACTTTAATCTGCTTCACTGCAA
* * * * * * * *
36466123 ATTCAGGTAGATAAGGTTTGTTAT-CTTCAGTCTGCTCCACTACAACTTCAGGGAGATAAGA-CT
66 CTTCAGGGAGATAA-GATTG-GATGC--GA-TCTGCTCTACTGCAACTTCAGAGAGATAAGATC-
36466186 TGTCATGG
125 TG---TGG
* * * * * * * *
36466194 -TGTGATCCACTCTACTGCAACTTTAGAGAGATAAGATCT-GTCATTTTAATCCGCTTCACTGCA
1 TTTTAATCCACTCCACTGCAACTTCAGAGAGATAGGA-CTAGTAACTTTAATCTGCTTCACTGCA
* * *
36466257 ACTTTAGGGAGATAAGATTGGATGCGATCTGCTCTACTGTAACTTCAGATAGATAAGATCTGTGG
65 ACTTCAGGGAGATAAGATTGGATGCGATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTGG
** *
36466322 TTTTAATCCACTCCACTGCAACTTCAGAGAGATAGGACTAGTAACTTTAATCTAATCCACTGCAA
1 TTTTAATCCACTCCACTGCAACTTCAGAGAGATAGGACTAGTAACTTTAATCTGCTTCACTGCAA
*
36466387 CTTCAGGGAGATAAGATTGGATGCGATCTGCTCTACTGCAATTTCAGAGAGATAAGATCTGTGG
66 CTTCAGGGAGATAAGATTGGATGCGATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTGG
* *
36466451 TTTTAATCCACTCCACTGCAACTTCAGGGAGATAGGACTAGTAACTTCAATCTGC-TCTACTGCA
1 TTTTAATCCACTCCACTGCAACTTCAGAGAGATAGGACTAGTAACTTTAATCTGCTTC-ACTGCA
36466515 ACTTCAGGGAGATAAGATT
65 ACTTCAGGGAGATAAGATT
36466534 TGTTGGCTTT
Statistics
Matches: 287, Mismatches: 47, Indels: 19
0.81 0.13 0.05
Matches are distributed among these distances:
128 6 0.02
129 186 0.65
131 28 0.10
132 2 0.01
133 2 0.01
134 5 0.02
135 57 0.20
136 1 0.00
ACGTcount: A:0.30, C:0.20, G:0.20, T:0.30
Consensus pattern (129 bp):
TTTTAATCCACTCCACTGCAACTTCAGAGAGATAGGACTAGTAACTTTAATCTGCTTCACTGCAA
CTTCAGGGAGATAAGATTGGATGCGATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTGG
Found at i:36466425 original size:85 final size:86
Alignment explanation
Indices: 36466336--36466578 Score: 283
Period size: 85 Copynumber: 2.8 Consensus size: 86
36466326 AATCCACTCC
* ** *
36466336 ACTGCAACTTCAGAGAGATAGGACTAGTAACTTTAATCTAATCCACTGCAACTTCAGGGAGATAA
1 ACTGCAACTTCAGAGAGATAAGACT-GTGGCTTTAATCTACTCCACTGCAACTTCAGGGAGATAA
* *
36466401 GATTG-GA-TGCGATCTGCTCT
65 GATTGTAACTGCAATCTGCTCT
* * * *
36466421 ACTGCAATTTCAGAGAGATAAGATCTGTGGTTTTAATCCACTCCACTGCAACTTCAGGGAGATAG
1 ACTGCAACTTCAGAGAGATAAGA-CTGTGGCTTTAATCTACTCCACTGCAACTTCAGGGAGATAA
* *
36466486 GACTAGTAACTTCAATCTGCTCT
65 GA-TTGTAACTGCAATCTGCTCT
* * * *
36466509 ACTGCAACTTCAGGGAGATAAGATTTGTTGGCTTTAATCTTCTCCACTGCAACTTTAGGGAGATA
1 ACTGCAACTTCAGAGAGATAAGA-CTG-TGGCTTTAATCTACTCCACTGCAACTTCAGGGAGATA
36466574 AGATT
64 AGATT
36466579 TGTCATATTC
Statistics
Matches: 132, Mismatches: 21, Indels: 7
0.82 0.13 0.04
Matches are distributed among these distances:
85 56 0.42
86 4 0.03
87 1 0.01
88 36 0.27
89 35 0.27
ACGTcount: A:0.30, C:0.20, G:0.21, T:0.30
Consensus pattern (86 bp):
ACTGCAACTTCAGAGAGATAAGACTGTGGCTTTAATCTACTCCACTGCAACTTCAGGGAGATAAG
ATTGTAACTGCAATCTGCTCT
Found at i:36466798 original size:45 final size:45
Alignment explanation
Indices: 36466749--36467063 Score: 318
Period size: 45 Copynumber: 7.1 Consensus size: 45
36466739 GTGTCTTTAA
* * *
36466749 TCTGCTTCACTGTCAATACAGGAAGGCAAGATATGCTATCTTCAG
1 TCTGCTTCGCTGTCAGTACAGGAAGGCAAGATCTGCTATCTTCAG
* * * * *
36466794 TCTGCTCCGCTGTCAGTACAGTAAGGCAAG-GCTGGTGTCTTC-G
1 TCTGCTTCGCTGTCAGTACAGGAAGGCAAGATCTGCTATCTTCAG
* * * * *
36466837 ATCTGTTTCGCTGCCGGTACATGAAGGCATGATCTGCTATCTTCAG
1 -TCTGCTTCGCTGTCAGTACAGGAAGGCAAGATCTGCTATCTTCAG
* * * * *
36466883 TCTGCTCCGCTGTCAATATAGGAAGGCAAG-GCTAG-TGTCTTC-G
1 TCTGCTTCGCTGTCAGTACAGGAAGGCAAGATCT-GCTATCTTCAG
* * *
36466926 ATCTGCTTTGCTGCCAGTACAGGAAGGCAAGATTTGCTATCTTCAG
1 -TCTGCTTCGCTGTCAGTACAGGAAGGCAAGATCTGCTATCTTCAG
* * * * *
36466972 TCTGCTCCGCTGTCAGTACAGGAAGGCAAG-GCTGATGTCTTCAA
1 TCTGCTTCGCTGTCAGTACAGGAAGGCAAGATCTGCTATCTTCAG
*
36467016 TCTGCTTCGTTGTCAGTACAGGAAGGCAAGATCTGCTATCTTCAG
1 TCTGCTTCGCTGTCAGTACAGGAAGGCAAGATCTGCTATCTTCAG
36467061 TCT
1 TCT
36467064 ACTTTACTGC
Statistics
Matches: 211, Mismatches: 50, Indels: 18
0.76 0.18 0.06
Matches are distributed among these distances:
43 2 0.01
44 102 0.48
45 105 0.50
46 2 0.01
ACGTcount: A:0.22, C:0.23, G:0.25, T:0.30
Consensus pattern (45 bp):
TCTGCTTCGCTGTCAGTACAGGAAGGCAAGATCTGCTATCTTCAG
Found at i:36466857 original size:44 final size:43
Alignment explanation
Indices: 36466748--36467299 Score: 288
Period size: 45 Copynumber: 12.7 Consensus size: 43
36466738 GGTGTCTTTA
* * ** *
36466748 ATCTGCTTCACTGTCAATACAGGAAGGCAAGATATGCTATCTTC
1 ATCTGCTTCGCTGTCAGTACAGGAAGGCAAG-GCTGCTGTCTTC
* * *
36466792 AGTCTGCTCCGCTGTCAGTACAGTAAGGCAAGGCTGGTGTCTTC
1 A-TCTGCTTCGCTGTCAGTACAGGAAGGCAAGGCTGCTGTCTTC
* * * * * * *
36466836 GATCTGTTTCGCTGCCGGTACATGAAGGCATGATCTGCTATCTTC
1 -ATCTGCTTCGCTGTCAGTACAGGAAGGCAAG-GCTGCTGTCTTC
* * *
36466881 AGTCTGCTCCGCTGTCAATATAGGAAGGCAAGGCTAG-TGTCTTC
1 A-TCTGCTTCGCTGTCAGTACAGGAAGGCAAGGCT-GCTGTCTTC
* * ** *
36466925 GATCTGCTTTGCTGCCAGTACAGGAAGGCAAGATTTGCTATCTTC
1 -ATCTGCTTCGCTGTCAGTACAGGAAGGCAAG-GCTGCTGTCTTC
* *
36466970 AGTCTGCTCCGCTGTCAGTACAGGAAGGCAAGGCTGATGTCTTC
1 A-TCTGCTTCGCTGTCAGTACAGGAAGGCAAGGCTGCTGTCTTC
* * *
36467014 AATCTGCTTCGTTGTCAGTACAGGAAGGCAAGATCTGCTATCTTC
1 -ATCTGCTTCGCTGTCAGTACAGGAAGGCAAG-GCTGCTGTCTTC
* * * * *
36467059 AGTCTAC-T---T-T-ACTGCA--AA--CTA---TGGTGTCTTC
1 A-TCTGCTTCGCTGTCAGTACAGGAAGGCAAGGCTGCTGTCTTC
* * ** *
36467090 GATCTGCTTCACTGTCAGTACAGGAAAGCAATATCTGCTATCTTC
1 -ATCTGCTTCGCTGTCAGTACAGGAAGGCAA-GGCTGCTGTCTTC
* * * * * * *
36467135 GATCTACTTCGCTGCCAATACAAGAAGACAAGATCTGCTATCTTC
1 -ATCTGCTTCGCTGTCAGTACAGGAAGGCAAG-GCTGCTGTCTTC
* * * ** ** * *
36467180 GATCTACTTCGCTGCCAATACAGGAAAACAAGATATGTTATCTTC
1 -ATCTGCTTCGCTGTCAGTACAGGAAGGCAAG-GCTGCTGTCTTC
* * *
36467225 AGTCTGCTCCGCTGTCAGTACAGGAAGGCAAGGCTGGTATCTTC
1 A-TCTGCTTCGCTGTCAGTACAGGAAGGCAAGGCTGCTGTCTTC
* *
36467269 GATC-ACTTCGCTGCCAGTACAGGAAGGCAAG
1 -ATCTGCTTCGCTGTCAGTACAGGAAGGCAAG
36467300 ATCTGCAACT
Statistics
Matches: 394, Mismatches: 84, Indels: 61
0.73 0.16 0.11
Matches are distributed among these distances:
31 12 0.03
32 2 0.01
35 3 0.01
36 1 0.00
37 6 0.02
39 6 0.02
40 1 0.00
41 3 0.01
43 24 0.06
44 118 0.30
45 218 0.55
ACGTcount: A:0.24, C:0.24, G:0.23, T:0.29
Consensus pattern (43 bp):
ATCTGCTTCGCTGTCAGTACAGGAAGGCAAGGCTGCTGTCTTC
Found at i:36466888 original size:89 final size:89
Alignment explanation
Indices: 36466737--36467305 Score: 490
Period size: 89 Copynumber: 6.5 Consensus size: 89
36466727 CTGCAAACTA
** * * * * *
36466737 TGGTGTCTTTAATCTGCTTCACTGTCAATACAGGAAGGCAAGATATGCTATCTTCAGTCTGCTCC
1 TGGTGTCTTCGATCTGTTTCGCTGCCAGTACAGGAAGGCAAGATCTGCTATCTTCAGTCTGCTCC
*
36466802 GCTGTCAGTACAGTAAGGCAAGGC
66 GCTGTCAGTACAGGAAGGCAAGGC
* * *
36466826 TGGTGTCTTCGATCTGTTTCGCTGCCGGTACATGAAGGCATGATCTGCTATCTTCAGTCTGCTCC
1 TGGTGTCTTCGATCTGTTTCGCTGCCAGTACAGGAAGGCAAGATCTGCTATCTTCAGTCTGCTCC
* *
36466891 GCTGTCAATATAGGAAGGCAAGGC
66 GCTGTCAGTACAGGAAGGCAAGGC
* *
36466915 TAGTGTCTTCGATCTGCTTT-GCTGCCAGTACAGGAAGGCAAGATTTGCTATCTTCAGTCTGCTC
1 TGGTGTCTTCGATCTG-TTTCGCTGCCAGTACAGGAAGGCAAGATCTGCTATCTTCAGTCTGCTC
36466979 CGCTGTCAGTACAGGAAGGCAAGGC
65 CGCTGTCAGTACAGGAAGGCAAGGC
* * * * * * **
36467004 TGATGTCTTCAATCTGCTTCGTTGTCAGTACAGGAAGGCAAGATCTGCTATCTTCAGTCTACTTT
1 TGGTGTCTTCGATCTGTTTCGCTGCCAGTACAGGAAGGCAAGATCTGCTATCTTCAGTCTGCTCC
* * * * *** *
36467069 ACTG-CA-AACTATGG-TGTCTTCGA
66 GCTGTCAGTAC-A-GGAAGGCAAGGC
* * * * *
36467092 T-CTG-CTTC-A-C----T-G-T-C-AGTACAGGAAAGCAATATCTGCTATCTTC-GATCTACTT
1 TGGTGTCTTCGATCTGTTTCGCTGCCAGTACAGGAAGGCAAGATCTGCTATCTTCAG-TCTGCTC
* * * * *
36467144 CGCTGCCAATACAAGAAGACAAGATC
65 CGCTGTCAGTACAGGAAGGCAAG-GC
* * ** * ** * *
36467170 TGCTATCTTCGATCTACTTCGCTGCCAATACAGGAAAACAAGATATGTTATCTTCAGTCTGCTCC
1 TGGTGTCTTCGATCTGTTTCGCTGCCAGTACAGGAAGGCAAGATCTGCTATCTTCAGTCTGCTCC
36467235 GCTGTCAGTACAGGAAGGCAAGGC
66 GCTGTCAGTACAGGAAGGCAAGGC
* **
36467259 TGGTATCTTCGATC-ACTTCGCTGCCAGTACAGGAAGGCAAGATCTGC
1 TGGTGTCTTCGATCTGTTTCGCTGCCAGTACAGGAAGGCAAGATCTGC
36467306 AACTTCATTG
Statistics
Matches: 386, Mismatches: 72, Indels: 45
0.77 0.14 0.09
Matches are distributed among these distances:
75 1 0.00
76 38 0.10
77 5 0.01
78 4 0.01
79 3 0.01
80 5 0.01
81 1 0.00
82 1 0.00
84 1 0.00
85 1 0.00
86 5 0.01
87 5 0.01
88 38 0.10
89 226 0.59
90 51 0.13
91 1 0.00
ACGTcount: A:0.24, C:0.24, G:0.23, T:0.29
Consensus pattern (89 bp):
TGGTGTCTTCGATCTGTTTCGCTGCCAGTACAGGAAGGCAAGATCTGCTATCTTCAGTCTGCTCC
GCTGTCAGTACAGGAAGGCAAGGC
Found at i:36467043 original size:178 final size:178
Alignment explanation
Indices: 36466737--36467301 Score: 593
Period size: 178 Copynumber: 3.2 Consensus size: 178
36466727 CTGCAAACTA
** * * *
36466737 TGGTGTCTTTAATCTGCTTCACTGTCAATACAGGAAGGCAAGATATGCTATCTTCAGTCTGCTCC
1 TGGTGTCTTCGATCTGCTTCGCTGCCAGTACAGGAAGGCAAGATATGCTATCTTCAGTCTGCTCC
* * * * * *
36466802 GCTGTCAGTACAGTAAGGCAAGGCTGGTGTCTTCGATCTGTTTCGCTGCCGGTACATGAAGGCAT
66 GCTGTCAGTACAGGAAGGCAAGGCTGATGTCTTCGATCTGCTTCGCTGCCAGTACAGGAAGGCAA
36466867 GATCTGCTATCTTCAGTCTGCTCCGCTGTCAATATAGGAAGGCAAGGC
131 GATCTGCTATCTTCAGTCTGCTCCGCTGTCAATATAGGAAGGCAAGGC
* * *
36466915 TAGTGTCTTCGATCTGCTTTGCTGCCAGTACAGGAAGGCAAGATTTGCTATCTTCAGTCTGCTCC
1 TGGTGTCTTCGATCTGCTTCGCTGCCAGTACAGGAAGGCAAGATATGCTATCTTCAGTCTGCTCC
* * *
36466980 GCTGTCAGTACAGGAAGGCAAGGCTGATGTCTTCAATCTGCTTCGTTGTCAGTACAGGAAGGCAA
66 GCTGTCAGTACAGGAAGGCAAGGCTGATGTCTTCGATCTGCTTCGCTGCCAGTACAGGAAGGCAA
* * * * *
36467045 GATCTGCTATCTTCAGTCTACT----T-T--A-CT-GCAA-ACTA---
131 GATCTGCTATCTTCAGTCTGCTCCGCTGTCAATATAGGAAGGCAAGGC
* * * * * * *
36467080 TGGTGTCTTCGATCTGCTTCACTGTCAGTACAGGAAAGCAATATCTGCTATCTTC-GATCTACTT
1 TGGTGTCTTCGATCTGCTTCGCTGCCAGTACAGGAAGGCAAGATATGCTATCTTCAG-TCTGCTC
* * * * * * * * * **
36467144 CGCTGCCAATACAAGAAGACAAGATCTGCTATCTTCGATCTACTTCGCTGCCAATACAGGAAAAC
65 CGCTGTCAGTACAGGAAGGCAAG-GCTGATGTCTTCGATCTGCTTCGCTGCCAGTACAGGAAGGC
* * * *
36467209 AAGATATGTTATCTTCAGTCTGCTCCGCTGTCAGTACAGGAAGGCAAGGC
129 AAGATCTGCTATCTTCAGTCTGCTCCGCTGTCAATATAGGAAGGCAAGGC
* *
36467259 TGGTATCTTCGATC-ACTTCGCTGCCAGTACAGGAAGGCAAGAT
1 TGGTGTCTTCGATCTGCTTCGCTGCCAGTACAGGAAGGCAAGAT
36467302 CTGCAACTTC
Statistics
Matches: 312, Mismatches: 60, Indels: 30
0.78 0.15 0.07
Matches are distributed among these distances:
164 1 0.00
165 72 0.23
166 52 0.17
168 2 0.01
169 3 0.01
170 2 0.01
171 2 0.01
173 1 0.00
174 1 0.00
175 3 0.01
176 2 0.01
178 158 0.51
179 13 0.04
ACGTcount: A:0.24, C:0.24, G:0.23, T:0.29
Consensus pattern (178 bp):
TGGTGTCTTCGATCTGCTTCGCTGCCAGTACAGGAAGGCAAGATATGCTATCTTCAGTCTGCTCC
GCTGTCAGTACAGGAAGGCAAGGCTGATGTCTTCGATCTGCTTCGCTGCCAGTACAGGAAGGCAA
GATCTGCTATCTTCAGTCTGCTCCGCTGTCAATATAGGAAGGCAAGGC
Found at i:36467178 original size:121 final size:120
Alignment explanation
Indices: 36466972--36467188 Score: 283
Period size: 121 Copynumber: 1.8 Consensus size: 120
36466962 CTATCTTCAG
* * * * * * * * *
36466972 TCTGCTCCGCTGTCAGTACAGGAAGGCAAGGCTGATGTCTTCAATCTGCTTCGTTGTCAGTACAG
1 TCTGCTCCACTGTCAGTACAGGAAAGCAAAGCTGATATCTTCAATCTACTTCGCTGCCAATACAA
*
36467037 GAAGGCAAGATCTGCTATCTTC-AGTCTACTTTACTGCAAACTATGGTGTCTTCGA
66 GAAGACAAGATCTGCTATCTTCGA-TCTACTTTACTGCAAACTATGGTGTCTTCGA
* * * *
36467092 TCTGCTTCACTGTCAGTACAGGAAAGCAATATCTGCTATCTTCGATCTACTTCGCTGCCAATACA
1 TCTGCTCCACTGTCAGTACAGGAAAGCAA-AGCTGATATCTTCAATCTACTTCGCTGCCAATACA
36467157 AGAAGACAAGATCTGCTATCTTCGATCTACTT
65 AGAAGACAAGATCTGCTATCTTCGATCTACTT
36467189 CGCTGCCAAT
Statistics
Matches: 81, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
120 26 0.32
121 54 0.67
122 1 0.01
ACGTcount: A:0.25, C:0.24, G:0.20, T:0.31
Consensus pattern (120 bp):
TCTGCTCCACTGTCAGTACAGGAAAGCAAAGCTGATATCTTCAATCTACTTCGCTGCCAATACAA
GAAGACAAGATCTGCTATCTTCGATCTACTTTACTGCAAACTATGGTGTCTTCGA
Found at i:36468413 original size:7 final size:7
Alignment explanation
Indices: 36468396--36468487 Score: 66
Period size: 7 Copynumber: 13.0 Consensus size: 7
36468386 TGGCCTCTCC
36468396 TTTTTCTT
1 TTTTTC-T
36468404 TTTTTCT
1 TTTTTCT
36468411 TTTTT-T
1 TTTTTCT
*
36468417 CTTTTCT
1 TTTTTCT
36468424 CTTTTTCT
1 -TTTTTCT
36468432 TTCTTT-T
1 TT-TTTCT
*
36468439 TTCTTC-
1 TTTTTCT
36468445 TTTTTCT
1 TTTTTCT
36468452 TTATTT-T
1 TT-TTTCT
* *
36468459 TCTTTAT
1 TTTTTCT
*
36468466 TTTTCCTT
1 TTTTTC-T
36468474 TTTTTCT
1 TTTTTCT
36468481 TTTTTCT
1 TTTTTCT
36468488 CTATTTTTTA
Statistics
Matches: 67, Mismatches: 9, Indels: 17
0.72 0.10 0.18
Matches are distributed among these distances:
6 15 0.22
7 28 0.42
8 24 0.36
ACGTcount: A:0.02, C:0.16, G:0.00, T:0.82
Consensus pattern (7 bp):
TTTTTCT
Found at i:36468414 original size:9 final size:9
Alignment explanation
Indices: 36468396--36468506 Score: 90
Period size: 10 Copynumber: 12.4 Consensus size: 9
36468386 TGGCCTCTCC
36468396 TTTTTC-TT
1 TTTTTCTTT
36468404 TTTTTC-TT
1 TTTTTCTTT
36468412 TTTTTC--T
1 TTTTTCTTT
*
36468419 TTTCTCTTT
1 TTTTTCTTT
36468428 TTCTTTC--T
1 TT-TTTCTTT
*
36468436 TTTTTCTTC
1 TTTTTCTTT
36468445 TTTTTCTTT
1 TTTTTCTTT
36468454 ATTTTTCTTT
1 -TTTTTCTTT
*
36468464 ATTTTTCCTT
1 -TTTTTCTTT
36468474 TTTTTCTTT
1 TTTTTCTTT
*
36468483 TTTCTCTATT
1 TTTTTCT-TT
*
36468493 TTTTATATTT
1 TTTT-TCTTT
36468503 TTTT
1 TTTT
36468507 ATTGAATTTG
Statistics
Matches: 86, Mismatches: 9, Indels: 14
0.79 0.08 0.13
Matches are distributed among these distances:
7 10 0.12
8 17 0.20
9 25 0.29
10 32 0.37
11 2 0.02
ACGTcount: A:0.05, C:0.14, G:0.00, T:0.81
Consensus pattern (9 bp):
TTTTTCTTT
Found at i:36468504 original size:26 final size:26
Alignment explanation
Indices: 36468396--36468495 Score: 76
Period size: 26 Copynumber: 4.2 Consensus size: 26
36468386 TGGCCTCTCC
36468396 TTTTT-CTTTTTTTCTTTTTT-TCT-
1 TTTTTCCTTTTTTTCTTTTTTCTCTA
* * *
36468419 TTTCTCTTTTTCTTTCTTTTTTCT-TC
1 TTTTTCCTTTT-TTTCTTTTTTCTCTA
* *
36468445 TTTTT-C----TTT-ATTTTTCTTTA
1 TTTTTCCTTTTTTTCTTTTTTCTCTA
36468465 TTTTTCCTTTTTTTCTTTTTTCTCTA
1 TTTTTCCTTTTTTTCTTTTTTCTCTA
36468491 TTTTT
1 TTTTT
36468496 TATATTTTTT
Statistics
Matches: 58, Mismatches: 8, Indels: 19
0.68 0.09 0.22
Matches are distributed among these distances:
19 7 0.12
20 9 0.16
21 1 0.02
23 4 0.07
24 4 0.07
25 14 0.24
26 19 0.33
ACGTcount: A:0.03, C:0.16, G:0.00, T:0.81
Consensus pattern (26 bp):
TTTTTCCTTTTTTTCTTTTTTCTCTA
Found at i:36469350 original size:22 final size:21
Alignment explanation
Indices: 36469309--36469350 Score: 50
Period size: 22 Copynumber: 2.0 Consensus size: 21
36469299 AAATTATGTA
*
36469309 CAATATGATTATGAATGAATG
1 CAATATGATTATGAAGGAATG
36469330 CAATAATGATT-TGGAAGGAAT
1 CAAT-ATGATTAT-GAAGGAAT
36469351 CTAAAAGAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 3
0.82 0.05 0.14
Matches are distributed among these distances:
21 5 0.28
22 13 0.72
ACGTcount: A:0.43, C:0.05, G:0.21, T:0.31
Consensus pattern (21 bp):
CAATATGATTATGAAGGAATG
Found at i:36474377 original size:12 final size:12
Alignment explanation
Indices: 36474362--36474405 Score: 52
Period size: 12 Copynumber: 3.6 Consensus size: 12
36474352 TATTTAAGCT
36474362 AAAATTTTTTCA
1 AAAATTTTTTCA
* *
36474374 AAAATTTCATTCT
1 AAAATTT-TTTCA
*
36474387 ATAATTTTTTCA
1 AAAATTTTTTCA
36474399 AAAATTT
1 AAAATTT
36474406 CATTCTTCCC
Statistics
Matches: 25, Mismatches: 6, Indels: 2
0.76 0.18 0.06
Matches are distributed among these distances:
12 16 0.64
13 9 0.36
ACGTcount: A:0.41, C:0.09, G:0.00, T:0.50
Consensus pattern (12 bp):
AAAATTTTTTCA
Found at i:36474392 original size:25 final size:25
Alignment explanation
Indices: 36474364--36474411 Score: 96
Period size: 25 Copynumber: 1.9 Consensus size: 25
36474354 TTTAAGCTAA
36474364 AATTTTTTCAAAAATTTCATTCTAT
1 AATTTTTTCAAAAATTTCATTCTAT
36474389 AATTTTTTCAAAAATTTCATTCT
1 AATTTTTTCAAAAATTTCATTCT
36474412 TCCCACTTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.35, C:0.12, G:0.00, T:0.52
Consensus pattern (25 bp):
AATTTTTTCAAAAATTTCATTCTAT
Found at i:36487995 original size:15 final size:15
Alignment explanation
Indices: 36487975--36488024 Score: 55
Period size: 15 Copynumber: 3.2 Consensus size: 15
36487965 AATAAATATA
36487975 AAATATAAAATTATT
1 AAATATAAAATTATT
* *
36487990 AAATATAAAAATAAT
1 AAATATAAAATTATT
*
36488005 ACAATATAAATATTTTT
1 A-AATATAAA-ATTATT
36488022 AAA
1 AAA
36488025 AAAATTAAAA
Statistics
Matches: 28, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
15 14 0.50
16 10 0.36
17 4 0.14
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.36
Consensus pattern (15 bp):
AAATATAAAATTATT
Found at i:36488000 original size:16 final size:16
Alignment explanation
Indices: 36487975--36488024 Score: 50
Period size: 16 Copynumber: 3.2 Consensus size: 16
36487965 AATAAATATA
36487975 AAATAT-AAAATTATT
1 AAATATAAAAATTATT
*
36487990 AAATATAAAAA-TAAT
1 AAATATAAAAATTATT
* *
36488005 ACAATATAAATATTTTT
1 A-AATATAAAAATTATT
36488022 AAA
1 AAA
36488025 AAAATTAAAA
Statistics
Matches: 28, Mismatches: 4, Indels: 5
0.76 0.11 0.14
Matches are distributed among these distances:
15 10 0.36
16 15 0.54
17 3 0.11
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.36
Consensus pattern (16 bp):
AAATATAAAAATTATT
Found at i:36488014 original size:22 final size:21
Alignment explanation
Indices: 36487966--36488017 Score: 61
Period size: 22 Copynumber: 2.4 Consensus size: 21
36487956 AAAAATTTCA
*
36487966 ATAAATATAAAATATAAAATT
1 ATAAATATAAAATATAAAAAT
36487987 ATTAAATATAAAA-ATAATACAAT
1 A-TAAATATAAAATATAA-A-AAT
36488010 ATAAATAT
1 ATAAATAT
36488018 TTTTAAAAAA
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
21 5 0.19
22 19 0.70
23 3 0.11
ACGTcount: A:0.65, C:0.02, G:0.00, T:0.33
Consensus pattern (21 bp):
ATAAATATAAAATATAAAAAT
Found at i:36491506 original size:18 final size:18
Alignment explanation
Indices: 36491467--36491526 Score: 59
Period size: 18 Copynumber: 3.3 Consensus size: 18
36491457 AAAATATAGA
**
36491467 AAAATATTTAAATTTTACT
1 AAAATATTTAAAAATTA-T
*
36491486 AAAA-ATTTAGAAAATTTT
1 AAAATATTTA-AAAATTAT
*
36491504 AAAATTTTTAAAAATTAT
1 AAAATATTTAAAAATTAT
36491522 AAAAT
1 AAAAT
36491527 TACGATAAAA
Statistics
Matches: 34, Mismatches: 5, Indels: 5
0.77 0.11 0.11
Matches are distributed among these distances:
18 22 0.65
19 12 0.35
ACGTcount: A:0.55, C:0.02, G:0.02, T:0.42
Consensus pattern (18 bp):
AAAATATTTAAAAATTAT
Found at i:36491659 original size:10 final size:9
Alignment explanation
Indices: 36491627--36491725 Score: 60
Period size: 9 Copynumber: 10.4 Consensus size: 9
36491617 CACATGGTGT
*
36491627 AAAATGATA
1 AAAATTATA
*
36491636 AAAATTTATT
1 AAAA-TTATA
36491646 AAAATTAATAA
1 AAAATT-AT-A
*
36491657 AAAATCATA
1 AAAATTATA
*
36491666 AAAGTTAT-
1 AAAATTATA
36491674 AAAATATATTA
1 AAAAT-TA-TA
36491685 CAAAA-TATA
1 -AAAATTATA
36491694 AAAA-TATA
1 AAAATTATA
*
36491702 GAAAATTATTT
1 -AAAATTA-TA
36491713 AAAATTATA
1 AAAATTATA
36491722 AAAA
1 AAAA
36491726 AATATGTAGA
Statistics
Matches: 71, Mismatches: 9, Indels: 20
0.71 0.09 0.20
Matches are distributed among these distances:
8 12 0.17
9 26 0.37
10 23 0.32
11 6 0.08
12 4 0.06
ACGTcount: A:0.64, C:0.02, G:0.03, T:0.31
Consensus pattern (9 bp):
AAAATTATA
Found at i:36491711 original size:28 final size:27
Alignment explanation
Indices: 36491627--36491725 Score: 83
Period size: 28 Copynumber: 3.5 Consensus size: 27
36491617 CACATGGTGT
* *
36491627 AAAATGATAAAAATTTATTAAAATTAATAA
1 AAAATCATAAAAA-TTA-TAAAATT-ATTA
*
36491657 AAAATCATAAAAGTTATAAAATATATTA
1 AAAATCATAAAAATTATAAAAT-TATTA
* *
36491685 CAAAAT-ATAAAAATATAGAAAATTATTT
1 -AAAATCATAAAAAT-TATAAAATTATTA
*
36491713 AAAATTATAAAAA
1 AAAATCATAAAAA
36491726 AATATGTAGA
Statistics
Matches: 59, Mismatches: 6, Indels: 10
0.79 0.08 0.13
Matches are distributed among these distances:
27 5 0.08
28 27 0.46
29 16 0.27
30 11 0.19
ACGTcount: A:0.64, C:0.02, G:0.03, T:0.31
Consensus pattern (27 bp):
AAAATCATAAAAATTATAAAATTATTA
Found at i:36491726 original size:10 final size:10
Alignment explanation
Indices: 36491627--36491726 Score: 50
Period size: 10 Copynumber: 10.4 Consensus size: 10
36491617 CACATGGTGT
*
36491627 AAAATGATAA
1 AAAATTATAA
* *
36491637 AAATTTAT-T
1 AAAATTATAA
36491646 AAAATTAATAA
1 AAAATT-ATAA
*
36491657 AAAATCAT-A
1 AAAATTATAA
*
36491666 AAAGTTATAA
1 AAAATTATAA
* *
36491676 AATA-TATTAC
1 AAAATTA-TAA
36491686 AAAA-TAT-A
1 AAAATTATAA
*
36491694 AAAA-TATAG
1 AAAATTATAA
**
36491703 AAAATTATTT
1 AAAATTATAA
36491713 AAAATTATAA
1 AAAATTATAA
36491723 AAAA
1 AAAA
36491727 ATATGTAGAA
Statistics
Matches: 66, Mismatches: 18, Indels: 12
0.69 0.19 0.12
Matches are distributed among these distances:
8 7 0.11
9 19 0.29
10 35 0.53
11 5 0.08
ACGTcount: A:0.64, C:0.02, G:0.03, T:0.31
Consensus pattern (10 bp):
AAAATTATAA
Found at i:36491726 original size:20 final size:20
Alignment explanation
Indices: 36491692--36491740 Score: 53
Period size: 20 Copynumber: 2.4 Consensus size: 20
36491682 TTACAAAATA
* * * *
36491692 TAAAAATATAGAAAATTATT
1 TAAAATTATAAAAAAATATG
36491712 TAAAATTATAAAAAAATATG
1 TAAAATTATAAAAAAATATG
36491732 TAGAAATTA
1 TA-AAATTA
36491741 GTCTTAGTTT
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
20 18 0.75
21 6 0.25
ACGTcount: A:0.61, C:0.00, G:0.06, T:0.33
Consensus pattern (20 bp):
TAAAATTATAAAAAAATATG
Found at i:36498017 original size:16 final size:16
Alignment explanation
Indices: 36497996--36498027 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
36497986 ACTGTTATGC
36497996 CTCTATTCCATTACAG
1 CTCTATTCCATTACAG
36498012 CTCTATTCCATTACAG
1 CTCTATTCCATTACAG
36498028 TGAACCAAAC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.25, C:0.31, G:0.06, T:0.38
Consensus pattern (16 bp):
CTCTATTCCATTACAG
Found at i:36501272 original size:14 final size:14
Alignment explanation
Indices: 36501253--36501284 Score: 50
Period size: 13 Copynumber: 2.4 Consensus size: 14
36501243 ATTATGTTAG
36501253 AATTAAAAACACAT
1 AATTAAAAACACAT
36501267 AATT-AAAACACAT
1 AATTAAAAACACAT
36501280 -ATTAA
1 AATTAA
36501285 TGATATTCAA
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
12 3 0.18
13 10 0.59
14 4 0.24
ACGTcount: A:0.62, C:0.12, G:0.00, T:0.25
Consensus pattern (14 bp):
AATTAAAAACACAT
Found at i:36501367 original size:39 final size:39
Alignment explanation
Indices: 36501263--36501370 Score: 182
Period size: 39 Copynumber: 2.8 Consensus size: 39
36501253 AATTAAAAAC
*
36501263 ACATAATTAAA-ACACATATTAATGATATTCAAACTAAG
1 ACATAATTAAAGACACATATTAATGATGTTCAAACTAAG
*
36501301 ACATAATTAAAGACACATATTAATGATGTTCAAGCTAAG
1 ACATAATTAAAGACACATATTAATGATGTTCAAACTAAG
*
36501340 ACATAATTAAAGACTCATATTAATGATGTTC
1 ACATAATTAAAGACACATATTAATGATGTTC
36501371 GCACTAATAT
Statistics
Matches: 66, Mismatches: 3, Indels: 1
0.94 0.04 0.01
Matches are distributed among these distances:
38 11 0.17
39 55 0.83
ACGTcount: A:0.47, C:0.13, G:0.09, T:0.31
Consensus pattern (39 bp):
ACATAATTAAAGACACATATTAATGATGTTCAAACTAAG
Found at i:36501531 original size:36 final size:36
Alignment explanation
Indices: 36501480--36501552 Score: 92
Period size: 36 Copynumber: 2.0 Consensus size: 36
36501470 ATGGAGTGAA
* * * * *
36501480 TACCCAAGCTTGATCAATTAGTCTCGTGATAGCTTC
1 TACCCAAACTCGATCAATGAGACCCGTGATAGCTTC
*
36501516 TACCCAAACTCGATCAATGAGACCCGTGATGGCTTC
1 TACCCAAACTCGATCAATGAGACCCGTGATAGCTTC
36501552 T
1 T
36501553 TTGAACTTCT
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
36 31 1.00
ACGTcount: A:0.26, C:0.27, G:0.18, T:0.29
Consensus pattern (36 bp):
TACCCAAACTCGATCAATGAGACCCGTGATAGCTTC
Found at i:36506036 original size:20 final size:22
Alignment explanation
Indices: 36506011--36506052 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
36506001 GAAATCTATG
36506011 TGTTCAC-ACT-AACATTAAAT
1 TGTTCACAACTAAACATTAAAT
*
36506031 TGTTCACAATTAAACATTAAAT
1 TGTTCACAACTAAACATTAAAT
36506053 ACGGTTCTTG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 7 0.37
21 2 0.11
22 10 0.53
ACGTcount: A:0.43, C:0.17, G:0.05, T:0.36
Consensus pattern (22 bp):
TGTTCACAACTAAACATTAAAT
Found at i:36506691 original size:14 final size:14
Alignment explanation
Indices: 36506672--36506703 Score: 50
Period size: 13 Copynumber: 2.4 Consensus size: 14
36506662 ATTATGTTAG
36506672 AATTAAAAACACAT
1 AATTAAAAACACAT
36506686 AATT-AAAACACAT
1 AATTAAAAACACAT
36506699 -ATTAA
1 AATTAA
36506704 TGATATTAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
12 3 0.18
13 10 0.59
14 4 0.24
ACGTcount: A:0.62, C:0.12, G:0.00, T:0.25
Consensus pattern (14 bp):
AATTAAAAACACAT
Found at i:36506741 original size:39 final size:38
Alignment explanation
Indices: 36506682--36506796 Score: 176
Period size: 39 Copynumber: 3.0 Consensus size: 38
36506672 AATTAAAAAC
* *
36506682 ACATAATTAAAACACATATTAATGATATTAAAACTAAG
1 ACATAATTAAAACACATATTAATGATGTTCAAACTAAG
*
36506720 ACATATTTAAAGACACATATTAATGATGTTCAAACTAAG
1 ACATAATTAAA-ACACATATTAATGATGTTCAAACTAAG
*
36506759 ACATAATTAAATACTCATATTAATGATGTTCAAACTAA
1 ACATAATTAAA-ACACATATTAATGATGTTCAAACTAA
36506797 AATAACTAAA
Statistics
Matches: 70, Mismatches: 6, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
38 10 0.14
39 60 0.86
ACGTcount: A:0.50, C:0.12, G:0.07, T:0.31
Consensus pattern (38 bp):
ACATAATTAAAACACATATTAATGATGTTCAAACTAAG
Found at i:36506805 original size:9 final size:9
Alignment explanation
Indices: 36506791--36506816 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
36506781 ATGATGTTCA
36506791 AACTAAAAT
1 AACTAAAAT
36506800 AACTAAAAT
1 AACTAAAAT
36506809 AACTAAAA
1 AACTAAAA
36506817 ATGGATTAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.69, C:0.12, G:0.00, T:0.19
Consensus pattern (9 bp):
AACTAAAAT
Found at i:36510510 original size:24 final size:24
Alignment explanation
Indices: 36510486--36510532 Score: 58
Period size: 25 Copynumber: 1.9 Consensus size: 24
36510476 AAACTACTTC
36510486 TAAAAAAAACTCAAGAGAGAATTCT
1 TAAAAAAAACTCAA-AGAGAATTCT
** *
36510511 TGGAGAAAACTCAAAGAGAATT
1 TAAAAAAAACTCAAAGAGAATT
36510533 TTTCACTCAA
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
24 8 0.42
25 11 0.58
ACGTcount: A:0.53, C:0.11, G:0.17, T:0.19
Consensus pattern (24 bp):
TAAAAAAAACTCAAAGAGAATTCT
Found at i:36511815 original size:33 final size:33
Alignment explanation
Indices: 36511737--36511811 Score: 116
Period size: 33 Copynumber: 2.3 Consensus size: 33
36511727 GTCCAGATTT
36511737 AAATAAATTAATTACTAACACTTATTTAAGCTG
1 AAATAAATTAATTACTAACACTTATTTAAGCTG
*
36511770 AAATACAATTAATT-CTAACACTTATTTGAGCTG
1 AAATA-AATTAATTACTAACACTTATTTAAGCTG
*
36511803 AACTAAATT
1 AAATAAATT
36511812 TAATAAACTA
Statistics
Matches: 39, Mismatches: 2, Indels: 3
0.89 0.05 0.07
Matches are distributed among these distances:
32 4 0.10
33 27 0.69
34 8 0.21
ACGTcount: A:0.44, C:0.13, G:0.07, T:0.36
Consensus pattern (33 bp):
AAATAAATTAATTACTAACACTTATTTAAGCTG
Found at i:36513617 original size:12 final size:12
Alignment explanation
Indices: 36513602--36513635 Score: 68
Period size: 12 Copynumber: 2.8 Consensus size: 12
36513592 TCATTCTCTT
36513602 TTTCTTTTTCGA
1 TTTCTTTTTCGA
36513614 TTTCTTTTTCGA
1 TTTCTTTTTCGA
36513626 TTTCTTTTTC
1 TTTCTTTTTC
36513636 TATCTTCCTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 22 1.00
ACGTcount: A:0.06, C:0.18, G:0.06, T:0.71
Consensus pattern (12 bp):
TTTCTTTTTCGA
Found at i:36513636 original size:18 final size:18
Alignment explanation
Indices: 36513581--36513623 Score: 61
Period size: 18 Copynumber: 2.3 Consensus size: 18
36513571 TCAATCTCTT
36513581 TTTTCTCTTTTTCATTCTC
1 TTTT-TCTTTTTCATTCTC
36513600 TTTTTCTTTTTCGATT-TC
1 TTTTTCTTTTTC-ATTCTC
36513618 TTTTTC
1 TTTTTC
36513624 GATTTCTTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 16 0.70
19 7 0.30
ACGTcount: A:0.05, C:0.21, G:0.02, T:0.72
Consensus pattern (18 bp):
TTTTTCTTTTTCATTCTC
Found at i:36515612 original size:25 final size:24
Alignment explanation
Indices: 36515584--36515634 Score: 57
Period size: 25 Copynumber: 2.1 Consensus size: 24
36515574 TTAAAACTAC
36515584 TTCTAAAAAAAAACTCAAGAGAGAA
1 TTCTAAAAAAAAACTCAA-AGAGAA
*** *
36515609 TTCTTGGAGAAAACTCAAAGAGAA
1 TTCTAAAAAAAAACTCAAAGAGAA
36515633 TT
1 TT
36515635 TTTCATTCAA
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
24 8 0.36
25 14 0.64
ACGTcount: A:0.51, C:0.12, G:0.16, T:0.22
Consensus pattern (24 bp):
TTCTAAAAAAAAACTCAAAGAGAA
Found at i:36516954 original size:32 final size:32
Alignment explanation
Indices: 36516901--36516967 Score: 91
Period size: 32 Copynumber: 2.1 Consensus size: 32
36516891 GTATTTTATC
* *
36516901 TAATTTGGTACTCAAATTTGACATTTTTTTCT
1 TAATTTAGTACTCAAAGTTGACATTTTTTTCT
*
36516933 TAATTTAGTA-TCTAAAGTTGACGTTTTTTTCT
1 TAATTTAGTACTC-AAAGTTGACATTTTTTTCT
36516965 TAA
1 TAA
36516968 GTTGATACAT
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
31 2 0.06
32 29 0.94
ACGTcount: A:0.27, C:0.10, G:0.10, T:0.52
Consensus pattern (32 bp):
TAATTTAGTACTCAAAGTTGACATTTTTTTCT
Found at i:36531881 original size:30 final size:30
Alignment explanation
Indices: 36531847--36531907 Score: 104
Period size: 30 Copynumber: 2.0 Consensus size: 30
36531837 AGTGTCAGCT
*
36531847 AACCTAGGGTTGAGGATAACGACAACCCTA
1 AACCTAGGGTTGAGGATAACAACAACCCTA
*
36531877 AACCTAGGGTTGAGGATGACAACAACCCTA
1 AACCTAGGGTTGAGGATAACAACAACCCTA
36531907 A
1 A
36531908 CTCTATATAT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.38, C:0.23, G:0.23, T:0.16
Consensus pattern (30 bp):
AACCTAGGGTTGAGGATAACAACAACCCTA
Found at i:36536983 original size:524 final size:523
Alignment explanation
Indices: 36535995--36537039 Score: 1883
Period size: 524 Copynumber: 2.0 Consensus size: 523
36535985 GAGACCGGAG
*
36535995 AAAATTGTATTTGGGTCCCGAAGCTTAAGCTACATCGGTATCAAGTATGGGTAGTGTGAAGCCTA
1 AAAATTGTATTTGGGTCCCGAAGCTCAAGCTACATCGGTATCAAGTATGGGTAGTGTGAAGCCTA
36536060 GTAAACCAGAGTGTCAGCATTGTGGTAGGCAACATCCTGGTGAATGCTAGTTAATTAGCCGAGCT
66 GTAAACCAGAGTGTCAGCATTGTGGTAGGCAACATCCTGGTGAATGCTAGTTAATTAGCCGAGCT
36536125 TGTTTCAAGTGTGGATCTCGACAACATTATATTAAAGATTGCCCTGAGAAAATTGAAGAAGAAAA
131 TGTTTCAAGTGTGGATCTCGACAACATTATATTAAAGATTGCCCTGAGAAAATTGAAGAAGAAAA
36536190 ATTTCAGAATGTTAGATCGAGTGATACTGTCAGCAGAGGTAGACCACCGAGAAACACCGGAACTA
196 ATTTCAGAATGTTAGATCGAGTGATACTGTCAGCAGAGGTAGACCACCGAGAAACACCGGAACTA
* * ** *
36536255 GAGATAGTGGTAAAAGTGTAATGAAGGGTACAGTTGCAAGACCAGAACCTCGAACACCTGCCAGA
261 GAGATAGTGGTAAAAATATAATGAAGGGTACAACTGCAAGACCAGAACCTCGAACACCTGCCAAA
* **
36536320 GCTTATGCCATATGTGCTCGTGAGGATGCATCATCACTTGATGTGATTACTGGTACATTCTCTCT
326 GCTTATGCCATACGTGCTCGTGAGGATGCATCATCACCCGATGTGATTACTGGTACATTCTCTCT
36536385 CTATGATATTGATGTTGTTGCTTTGATTGACCCTGGGTCTACTCATTCATATGTATGTGTGAATT
391 CTATGATATTGATGTTGTTGCTTTGATTGACCCTGGGTCTACTCATTCATATGTATGTGTGAATT
*
36536450 TAGTATCTAATAAAAATTTGCCTGTTGAAAACACTGAATATGTGGTAAAAGTATCAAACCCTTTA
456 TAGTATCTAA-AAAAAATTGCCTGTTGAAAACACTGAATATGTGGTAAAAGTATCAAACCCTTTA
36536515 GGTA
520 GGTA
* * *
36536519 AAAATTGTATTTGGGTCTCGAAGCTCAAGCTACGTCGGTATCAAGTGTGGGTAGTGTGAAGCCTA
1 AAAATTGTATTTGGGTCCCGAAGCTCAAGCTACATCGGTATCAAGTATGGGTAGTGTGAAGCCTA
*
36536584 GTAAACCAGAGTGTCAGCATTGTGGTAGGCAACATCCTGGTGAATGCTGGTTAATTAGCCGAGCT
66 GTAAACCAGAGTGTCAGCATTGTGGTAGGCAACATCCTGGTGAATGCTAGTTAATTAGCCGAGCT
* * *
36536649 TGTTTCAAGTGTGGCTCTTGACAACATTATATTAAAGATTGCCTTGAGAAAATTGAAGAAGAAAA
131 TGTTTCAAGTGTGGATCTCGACAACATTATATTAAAGATTGCCCTGAGAAAATTGAAGAAGAAAA
*
36536714 ATTTCAGAATGTTAGATCGAGTGATACTGTCAGCAGAGGTAGACCACCGAGAAACACCTGAACTA
196 ATTTCAGAATGTTAGATCGAGTGATACTGTCAGCAGAGGTAGACCACCGAGAAACACCGGAACTA
*
36536779 GAGATAGTGGTAAAAATATAATGAAGGGTACAACTGCAAGACCAGAACCTCGAACACCTGCTAAA
261 GAGATAGTGGTAAAAATATAATGAAGGGTACAACTGCAAGACCAGAACCTCGAACACCTGCCAAA
*
36536844 GCTTATGCCATACGTGCTCGTGAGGATGCATCATCTCCCGATGTGATTACTGGTACATTCTCTCT
326 GCTTATGCCATACGTGCTCGTGAGGATGCATCATCACCCGATGTGATTACTGGTACATTCTCTCT
36536909 CTATGATATTGATGTTGTTGCTTTGATTGACCCTGGGTCTACTCATTCATATGTATGTGTGAATT
391 CTATGATATTGATGTTGTTGCTTTGATTGACCCTGGGTCTACTCATTCATATGTATGTGTGAATT
* *
36536974 TAGTATCTAAAAAAAATTGCTTGTTGAAAACACTGAATTTGTGGTAAAAGTATCAAACCCTTTAG
456 TAGTATCTAAAAAAAATTGCCTGTTGAAAACACTGAATATGTGGTAAAAGTATCAAACCCTTTAG
36537039 G
521 G
36537040 CAAATATGTT
Statistics
Matches: 499, Mismatches: 22, Indels: 1
0.96 0.04 0.00
Matches are distributed among these distances:
523 53 0.11
524 446 0.89
ACGTcount: A:0.31, C:0.17, G:0.23, T:0.29
Consensus pattern (523 bp):
AAAATTGTATTTGGGTCCCGAAGCTCAAGCTACATCGGTATCAAGTATGGGTAGTGTGAAGCCTA
GTAAACCAGAGTGTCAGCATTGTGGTAGGCAACATCCTGGTGAATGCTAGTTAATTAGCCGAGCT
TGTTTCAAGTGTGGATCTCGACAACATTATATTAAAGATTGCCCTGAGAAAATTGAAGAAGAAAA
ATTTCAGAATGTTAGATCGAGTGATACTGTCAGCAGAGGTAGACCACCGAGAAACACCGGAACTA
GAGATAGTGGTAAAAATATAATGAAGGGTACAACTGCAAGACCAGAACCTCGAACACCTGCCAAA
GCTTATGCCATACGTGCTCGTGAGGATGCATCATCACCCGATGTGATTACTGGTACATTCTCTCT
CTATGATATTGATGTTGTTGCTTTGATTGACCCTGGGTCTACTCATTCATATGTATGTGTGAATT
TAGTATCTAAAAAAAATTGCCTGTTGAAAACACTGAATATGTGGTAAAAGTATCAAACCCTTTAG
GTA
Found at i:36541690 original size:51 final size:50
Alignment explanation
Indices: 36541607--36541952 Score: 327
Period size: 51 Copynumber: 6.8 Consensus size: 50
36541597 GATGAACACG
*
36541607 TGTGTAGTAACTATGTGAAGGCTACTACGTGTATCGATAAATAATGGTCACA
1 TGTGTAGT-ACTATGTGAAGGCTACTACGTGTACCGATAAAT-ATGGTCACA
* * * * * * * *
36541659 TGTGTAGTACTAAGTGAAGGCTACAATGTGTACCGAGAAGCTTTGTTCACG
1 TGTGTAGTACTATGTGAAGGCTACTACGTGTACCGATAA-ATATGGTCACA
* * * *
36541710 TGTGTAGTACTGTGTGAAGGCTACTACATGAATCGATAAATGATGGTCACA
1 TGTGTAGTACTATGTGAAGGCTACTACGTGTACCGATAAAT-ATGGTCACA
* * * * * * * * *
36541761 TGTGTAGTACTAAGTGAAGGGTACAATGTGTACCGAGAAGCTTTAGTCACG
1 TGTGTAGTACTATGTGAAGGCTACTACGTGTACCGATAA-ATATGGTCACA
* * *
36541812 TGTGTAGTACTGTGTGAAGGCTACTACGTGAATCGATAAATGATGGTCACA
1 TGTGTAGTACTATGTGAAGGCTACTACGTGTACCGATAAAT-ATGGTCACA
* * * * *
36541863 TGCGTAGTACTAAGTGAAGGCTACTATGTGTACCGA-AAAGCTTTGGTCACG
1 TGTGTAGTACTATGTGAAGGCTACTACGTGTACCGATAAA--TATGGTCACA
*
36541914 TGTGTAGTACTATGTGAAGGCTACTACGTGAACCG-TAAA
1 TGTGTAGTACTATGTGAAGGCTACTACGTGTACCGATAAA
36541953 ACTTGATCAC
Statistics
Matches: 229, Mismatches: 58, Indels: 15
0.76 0.19 0.05
Matches are distributed among these distances:
50 5 0.02
51 213 0.93
52 11 0.05
ACGTcount: A:0.30, C:0.15, G:0.27, T:0.29
Consensus pattern (50 bp):
TGTGTAGTACTATGTGAAGGCTACTACGTGTACCGATAAATATGGTCACA
Found at i:36541796 original size:102 final size:101
Alignment explanation
Indices: 36541603--36541945 Score: 569
Period size: 102 Copynumber: 3.4 Consensus size: 101
36541593 TATCGATGAA
* *
36541603 CACGTGTGTAGTAACTATGTGAAGGCTACTACGTGTATCGATAAATAATGGTCACATGTGTAGTA
1 CACGTGTGTAGT-ACTATGTGAAGGCTACTACGTGAATCGATAAATGATGGTCACATGTGTAGTA
36541668 CTAAGTGAAGGCTACAATGTGTACCGAGAAGCTTTGTT
65 CTAAGTGAAGGCTACAATGTGTACCGAGAAGCTTTG-T
* *
36541706 CACGTGTGTAGTACTGTGTGAAGGCTACTACATGAATCGATAAATGATGGTCACATGTGTAGTAC
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAATCGATAAATGATGGTCACATGTGTAGTAC
*
36541771 TAAGTGAAGGGTACAATGTGTACCGAGAAGCTTTAGT
66 TAAGTGAAGGCTACAATGTGTACCGAGAAGCTTT-GT
* *
36541808 CACGTGTGTAGTACTGTGTGAAGGCTACTACGTGAATCGATAAATGATGGTCACATGCGTAGTAC
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAATCGATAAATGATGGTCACATGTGTAGTAC
* *
36541873 TAAGTGAAGGCTACTATGTGTACCGAAAAGCTTTGGT
66 TAAGTGAAGGCTACAATGTGTACCGAGAAGCTTT-GT
36541910 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAA
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAA
36541946 CCGTAAAACT
Statistics
Matches: 227, Mismatches: 12, Indels: 3
0.94 0.05 0.01
Matches are distributed among these distances:
102 214 0.94
103 13 0.06
ACGTcount: A:0.29, C:0.15, G:0.27, T:0.29
Consensus pattern (101 bp):
CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAATCGATAAATGATGGTCACATGTGTAGTAC
TAAGTGAAGGCTACAATGTGTACCGAGAAGCTTTGT
Found at i:36548876 original size:18 final size:19
Alignment explanation
Indices: 36548843--36548880 Score: 69
Period size: 18 Copynumber: 2.1 Consensus size: 19
36548833 GAATGAACAG
36548843 CTCGATTATACGCAAACTC
1 CTCGATTATACGCAAACTC
36548862 CTCGATTAT-CGCAAACTC
1 CTCGATTATACGCAAACTC
36548880 C
1 C
36548881 ACATGTGGTA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 10 0.53
19 9 0.47
ACGTcount: A:0.29, C:0.34, G:0.11, T:0.26
Consensus pattern (19 bp):
CTCGATTATACGCAAACTC
Found at i:36553542 original size:13 final size:13
Alignment explanation
Indices: 36553524--36553570 Score: 67
Period size: 13 Copynumber: 3.5 Consensus size: 13
36553514 CCGTATGCAA
*
36553524 TTTTTTTTCAATT
1 TTTTTTTTCGATT
36553537 TTTTTTTTCGATT
1 TTTTTTTTCGATT
*
36553550 TTTTTTTCTTGATT
1 TTTTTTT-TCGATT
36553564 TTTTTTT
1 TTTTTTT
36553571 CGAAACTACA
Statistics
Matches: 31, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
13 19 0.61
14 12 0.39
ACGTcount: A:0.09, C:0.06, G:0.04, T:0.81
Consensus pattern (13 bp):
TTTTTTTTCGATT
Found at i:36553543 original size:14 final size:14
Alignment explanation
Indices: 36553524--36553570 Score: 62
Period size: 14 Copynumber: 3.4 Consensus size: 14
36553514 CCGTATGCAA
*
36553524 TTTTTTTTC-AATT
1 TTTTTTTTCGATTT
36553537 TTTTTTTTCGATTT
1 TTTTTTTTCGATTT
36553551 TTTTTTCTT-GATTT
1 TTTTTT-TTCGATTT
36553565 TTTTTT
1 TTTTTT
36553571 CGAAACTACA
Statistics
Matches: 31, Mismatches: 1, Indels: 3
0.89 0.03 0.09
Matches are distributed among these distances:
13 9 0.29
14 20 0.65
15 2 0.06
ACGTcount: A:0.09, C:0.06, G:0.04, T:0.81
Consensus pattern (14 bp):
TTTTTTTTCGATTT
Found at i:36562432 original size:19 final size:19
Alignment explanation
Indices: 36562396--36562431 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
36562386 CGACGGTTGG
36562396 CTAAAAAAAATGGTTTTTA
1 CTAAAAAAAATGGTTTTTA
*
36562415 CTAAAACAAA-GGTTTTT
1 CTAAAAAAAATGGTTTTT
36562432 TTTTCTGAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 7 0.44
19 9 0.56
ACGTcount: A:0.44, C:0.08, G:0.11, T:0.36
Consensus pattern (19 bp):
CTAAAAAAAATGGTTTTTA
Found at i:36565748 original size:54 final size:50
Alignment explanation
Indices: 36565684--36565865 Score: 181
Period size: 54 Copynumber: 3.6 Consensus size: 50
36565674 GGTAAAGAGA
* * **
36565684 TCCCATGTAAGACCATGTCTGGGATATGGCATTGGCATCATTGAGATTATGAGG
1 TCCCATGTAAGACCATGTCTGGGATATGGCATTGGCA-C--CGAGATGA-GAAC
* *
36565738 TCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATGAGAAC
1 TCCCATGTAAGACCATGTCTGGGATATGGCATTGGCACCGAGATGAGAAC
* * * * *
36565788 TCCCATGTAAGACCATATCTAGGATATGTCATTGGCA--GTACAAGA-AAC
1 TCCCATGTAAGACCATGTCTGGGATATGGCATTGGCACCG-AGATGAGAAC
*
36565836 ATCCCATGTAAGACCATGTCTGGGACATGG
1 -TCCCATGTAAGACCATGTCTGGGATATGG
36565866 TTTTGGCATG
Statistics
Matches: 109, Mismatches: 17, Indels: 9
0.81 0.13 0.07
Matches are distributed among these distances:
48 4 0.04
49 29 0.27
50 34 0.31
51 6 0.06
53 1 0.01
54 35 0.32
ACGTcount: A:0.29, C:0.21, G:0.26, T:0.25
Consensus pattern (50 bp):
TCCCATGTAAGACCATGTCTGGGATATGGCATTGGCACCGAGATGAGAAC
Found at i:36565823 original size:50 final size:53
Alignment explanation
Indices: 36565684--36565874 Score: 184
Period size: 50 Copynumber: 3.7 Consensus size: 53
36565674 GGTAAAGAGA
* * **
36565684 TCCCATGTAAGACCATGTCTGGGATATGGCATTGGCATCATTGAGATTATGAGG
1 TCCCATGTAAGACCATGTCTGGGATATGGCATTGGCATCA-CGAGATGATGAAC
* *
36565738 TCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCA-C-CGAGATGA-GAAC
1 TCCCATGTAAGACCATGTCTGGGATATGGCATTGGCATCACGAGATGATGAAC
* * *
36565788 TCCCATGTAAGACCATATCTAGGATATGTCATTGGCAGT-AC-A-A-GA--AAC
1 TCCCATGTAAGACCATGTCTGGGATATGGCATTGGCA-TCACGAGATGATGAAC
* **
36565836 ATCCCATGTAAGACCATGTCTGGGACATGGTTTTGGCAT
1 -TCCCATGTAAGACCATGTCTGGGATATGGCATTGGCAT
36565875 GTTATTATCA
Statistics
Matches: 116, Mismatches: 17, Indels: 14
0.79 0.12 0.10
Matches are distributed among these distances:
48 4 0.03
49 33 0.28
50 35 0.30
51 7 0.06
52 1 0.01
53 1 0.01
54 35 0.30
ACGTcount: A:0.28, C:0.20, G:0.26, T:0.26
Consensus pattern (53 bp):
TCCCATGTAAGACCATGTCTGGGATATGGCATTGGCATCACGAGATGATGAAC
Found at i:36594914 original size:24 final size:24
Alignment explanation
Indices: 36594886--36594946 Score: 88
Period size: 23 Copynumber: 2.6 Consensus size: 24
36594876 AATTTGGTTT
**
36594886 ATTTCGTACCAAAAATTCCATACC
1 ATTTCGTACCAAAAACCCCATACC
*
36594910 ATTTCGTA-CTAAAACCCCATACC
1 ATTTCGTACCAAAAACCCCATACC
36594933 ATTTCGTACCAAAA
1 ATTTCGTACCAAAA
36594947 CCAACTCCAT
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
23 20 0.62
24 12 0.38
ACGTcount: A:0.38, C:0.30, G:0.05, T:0.28
Consensus pattern (24 bp):
ATTTCGTACCAAAAACCCCATACC
Found at i:36599672 original size:208 final size:210
Alignment explanation
Indices: 36599299--36599723 Score: 710
Period size: 208 Copynumber: 2.0 Consensus size: 210
36599289 GCGCCTAACT
*
36599299 CGTTGTCAAATTTATCCTTACTTCAAATATTTCCCTTCACATTCTAAAAAAAAGTCTCTCTCTAC
1 CGTTCTCAAATTTATCCTTACTTCAAATATTTCCCTTCACATTCT-AAAAAAAGTCTCTCTCTAC
* *
36599364 CATAAATCAAGGTTTCCCTAAAAATTTTGTATAAAGAACAAAGCAATAGCATAACAATATCATAG
65 CATAAATCAAGGTTTCCCTAAAAATTTTGTATAAAGAACAAAGCAATAACATAACAATAACATAG
* *
36599429 TCTCTTTCTATGATGGCCTCAACATTCGTTAGATCATTGAGAAGAGTGAAATATTCACTAATATG
130 TCTCTTTCTATAATGGCCTCAACATTCGATAGATCATTGAGAAGAGTGAAATATTCACTAATATG
36599494 GGCCCTAATAGACTCA
195 GGCCCTAATAGACTCA
* * *
36599510 CGTTCTCAAATTTATCCTTACTTCAAATATTTCCCTTCACGTTCT-CAAAAAG-GTCTCTCTACC
1 CGTTCTCAAATTTATCCTTACTTCAAATATTTCCCTTCACATTCTAAAAAAAGTCTCTCTCTACC
* *
36599573 ATAAATCATGGTTTCCCTAAAAATTTTGTATGAAGAACAAAGCAATAACATAACAATAACATAGT
66 ATAAATCAAGGTTTCCCTAAAAATTTTGTATAAAGAACAAAGCAATAACATAACAATAACATAGT
* *
36599638 CTCTTTCTGTAATGGCCTCAACATTTGATAGATCATTGAGAAGAGTGAAATATTCACTAATATGG
131 CTCTTTCTATAATGGCCTCAACATTCGATAGATCATTGAGAAGAGTGAAATATTCACTAATATGG
36599703 GCCCTAATAGACTCA
196 GCCCTAATAGACTCA
*
36599718 CCTTCT
1 CGTTCT
36599724 TCCATATGAA
Statistics
Matches: 201, Mismatches: 13, Indels: 3
0.93 0.06 0.01
Matches are distributed among these distances:
208 152 0.76
209 6 0.03
211 43 0.21
ACGTcount: A:0.35, C:0.21, G:0.12, T:0.32
Consensus pattern (210 bp):
CGTTCTCAAATTTATCCTTACTTCAAATATTTCCCTTCACATTCTAAAAAAAGTCTCTCTCTACC
ATAAATCAAGGTTTCCCTAAAAATTTTGTATAAAGAACAAAGCAATAACATAACAATAACATAGT
CTCTTTCTATAATGGCCTCAACATTCGATAGATCATTGAGAAGAGTGAAATATTCACTAATATGG
GCCCTAATAGACTCA
Found at i:36601269 original size:16 final size:16
Alignment explanation
Indices: 36601248--36601304 Score: 87
Period size: 16 Copynumber: 3.6 Consensus size: 16
36601238 TTTGGTTCGC
*
36601248 TGTATTGGATTAGAGG
1 TGTAATGGATTAGAGG
*
36601264 TGTATTGGATTAGAGG
1 TGTAATGGATTAGAGG
*
36601280 TGTAATGGAATAGAGG
1 TGTAATGGATTAGAGG
36601296 TGTAATGGA
1 TGTAATGGA
36601305 AAAGCTGTGT
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 39 1.00
ACGTcount: A:0.30, C:0.00, G:0.37, T:0.33
Consensus pattern (16 bp):
TGTAATGGATTAGAGG
Found at i:36619185 original size:30 final size:30
Alignment explanation
Indices: 36619149--36619210 Score: 90
Period size: 30 Copynumber: 2.1 Consensus size: 30
36619139 TCCAGAATTA
*
36619149 TGCATGGTACATTTCC-TTTGTAAGAGGCCT
1 TGCATGGTACA-TTCCGTTTGCAAGAGGCCT
*
36619179 TGCATGGTACATTCCGTTTGCAAGAGGTCT
1 TGCATGGTACATTCCGTTTGCAAGAGGCCT
36619209 TG
1 TG
36619211 GTAGACAAAC
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
29 4 0.14
30 25 0.86
ACGTcount: A:0.19, C:0.19, G:0.26, T:0.35
Consensus pattern (30 bp):
TGCATGGTACATTCCGTTTGCAAGAGGCCT
Found at i:36619380 original size:37 final size:37
Alignment explanation
Indices: 36619325--36619396 Score: 108
Period size: 37 Copynumber: 1.9 Consensus size: 37
36619315 CACATCACGG
*
36619325 GTGTACTATAATTCTAGTACAGTATATATATGGATGA
1 GTGTACTATAAATCTAGTACAGTATATATATGGATGA
* **
36619362 GTGTGCTATAAATCTAGTATGGTATATATATGGAT
1 GTGTACTATAAATCTAGTACAGTATATATATGGAT
36619397 AGAATTTATT
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
37 31 1.00
ACGTcount: A:0.33, C:0.07, G:0.21, T:0.39
Consensus pattern (37 bp):
GTGTACTATAAATCTAGTACAGTATATATATGGATGA
Found at i:36621334 original size:32 final size:33
Alignment explanation
Indices: 36621264--36621334 Score: 83
Period size: 33 Copynumber: 2.2 Consensus size: 33
36621254 TATGAATCGT
* *
36621264 AAAATGAATATGAATATATATTGGTTCTACTAA
1 AAAATAAATATGAATATATATTGATTCTACTAA
* *
36621297 TAAATAAATATGAATTATATATTTATT-T-CTAA
1 AAAATAAATATGAA-TATATATTGATTCTACTAA
36621329 AAAATA
1 AAAATA
36621335 TTTATTAATA
Statistics
Matches: 32, Mismatches: 5, Indels: 3
0.80 0.12 0.08
Matches are distributed among these distances:
32 9 0.28
33 13 0.41
34 10 0.31
ACGTcount: A:0.49, C:0.04, G:0.07, T:0.39
Consensus pattern (33 bp):
AAAATAAATATGAATATATATTGATTCTACTAA
Found at i:36622093 original size:65 final size:65
Alignment explanation
Indices: 36622011--36622138 Score: 188
Period size: 65 Copynumber: 2.0 Consensus size: 65
36622001 ATAGTTACAA
*
36622011 GTGAAATATTATAATAAATCTAAAA-TTATAATTTAAAAAATGATAAATAATGCCTCCTTAATTA
1 GTGAAATATTATAATAAATCCAAAAGTTATAA-TTAAAAAATGATAAATAATGCCT-CTTAATTA
36622075 TT
64 TT
* * *
36622077 GTGAAAT-TTATAATAAATCCAAAAGTTATAATTGAAAAATGATACATTATGCCTCTTAATTA
1 GTGAAATATTATAATAAATCCAAAAGTTATAATTAAAAAATGATAAATAATGCCTCTTAATTA
36622139 AGGAGACTTG
Statistics
Matches: 57, Mismatches: 4, Indels: 4
0.88 0.06 0.06
Matches are distributed among these distances:
64 8 0.14
65 36 0.63
66 13 0.23
ACGTcount: A:0.47, C:0.09, G:0.08, T:0.37
Consensus pattern (65 bp):
GTGAAATATTATAATAAATCCAAAAGTTATAATTAAAAAATGATAAATAATGCCTCTTAATTATT
Found at i:36624378 original size:50 final size:50
Alignment explanation
Indices: 36624269--36624516 Score: 293
Period size: 50 Copynumber: 4.8 Consensus size: 50
36624259 ATTTGGATAA
*
36624269 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCTTAAGATCATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA-CC--AAGA-C--G
*
36624325 AGAGGTCCCATGTAAGA-CATGGTCTGGGACATGGCATTGGCACCGAGACG
1 AGAGGTCCCATGTAAGACCAT-GTCTGGGACATGGCATTGGCACCAAGACG
* *
36624375 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCAAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCAAGACG
** * * *
36624425 AGAGGTCCCCCGTAAGACCATGTCTGGGACATGGCA-TGAGCACCTATATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTG-GCACCAAGACG
** * *
36624475 AGAACTCCCATGTAAGACCATTTCTGGGATATGGCATTGGCA
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA
36624517 GTACAAGAAA
Statistics
Matches: 172, Mismatches: 16, Indels: 14
0.85 0.08 0.07
Matches are distributed among these distances:
49 2 0.01
50 119 0.69
51 5 0.03
52 1 0.01
53 3 0.02
55 5 0.03
56 37 0.22
ACGTcount: A:0.27, C:0.23, G:0.29, T:0.22
Consensus pattern (50 bp):
AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCAAGACG
Found at i:36633362 original size:56 final size:52
Alignment explanation
Indices: 36633290--36633535 Score: 270
Period size: 50 Copynumber: 4.8 Consensus size: 52
36633280 ACAAATGTAA
*
36633290 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCTTGAGATCATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA-CC--GAGA-CATG
*
36633346 AGAGGTCCCATGTAAGACCATGTTTGGGACATGGCATTGGCACCGAGAC--G
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGACATG
* * * *
36633396 AGAGGTCTCATGTAAGACCATGCCTGGGACATGGCGTTGGCAGCGAG--ATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGACATG
* ** * * *
36633446 AAAGGTCCCCCGTAACACCATGTCTGGGACATGGCATGGGCACC--TACATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGACATG
** * *
36633496 AGAACTCCCATGTAAGACCATATCTGGGATATGGCATTGG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGG
36633536 TGGTACAAGA
Statistics
Matches: 160, Mismatches: 26, Indels: 14
0.80 0.13 0.07
Matches are distributed among these distances:
50 113 0.71
52 1 0.01
53 4 0.03
55 2 0.01
56 40 0.25
ACGTcount: A:0.26, C:0.23, G:0.29, T:0.22
Consensus pattern (52 bp):
AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGACATG
Found at i:36639638 original size:759 final size:761
Alignment explanation
Indices: 36637533--36641318 Score: 5428
Period size: 759 Copynumber: 5.0 Consensus size: 761
36637523 AAGAAAGTCA
* * *
36637533 TATTTTTGTCCCCTAATTTCAACCAGTTCATCCT-AGCCCTTAGCTCCCAATACATTTCATCTTT
1 TATTTTTGTCCCCTAATTTCAACCAGTTTA-CCTGAGCCCTTTGCTCCCAATACATTTCGTCTTT
* *
36637597 ATCAATCTCTAAATTAAGATGTACTCCAGTATCAAT-CAAATCAGCCATA-----ATTAGTTCTG
65 ATCAATCTCTAAATTAAGATGTACTCTAGTATCAATCCAAATCAGCCATACTTTCATCAGTTCTG
* * * *
36637656 TCATGATTTAAGAGAAATTTTATTTTTTCTATCTGCTTCTTCTTTTGCCCTTCCCTTTTTTGTCT
130 TCTTGATCTAAGAGAAATTTTATTTTTTCTATCAGCTTCTTCTTTCGCCCTTCCCTTTTTTGTCT
* * * **
36637721 AATTCTAGTAGCCCATCTTACGAGCCCAATTTGTAAAAATTTGAGCTTTTCAAAAATATCACCGT
195 AATTCCAGTAGCCCATCTTACGAGCCCAATCTATAAAAATTTGAATTTTTCAAAAATATCACCGT
*
36637786 GATCAACTTGCCACAATCATCTGATCTCATCCACACAATTTTCTTCCTTCACCCACCATGCCTCA
260 GATCAACTTGCCACAATCATCTGATCTCATCCACACAATTTTCTTCCTTCACCCACCACGCCTCA
* * * *
36637851 AATTGAAATATCTTACTATACATGTTCTTTGATTCAATATCAAGACCAAGCAGTATGGGATAGTG
325 AATTGAAATACCTTCCTATACATGTTCTTTGATTCAATATCAATATCAAGCAGTATGGGATAGTG
* * *
36637916 ATAGGAAAAA-AATTCGGTAAATGGTGAAAAACTGCTATTGGAAACATATCCCTCCACTCTAAGT
390 ATCGGAAAAAGAATGCGGTAAATGGTGAAAAACTGCTGTTGGAAACATATCCCTCCACTCTAAGT
* *
36637980 TCGCCACACCCCTATCAAGCCTTTCATGTATATTAGTCTCCGGCAAATTCCCTCTTTCCCAAGCA
455 TCGCCACACCCCTATCAAGCCTTTCATGTATATTAGTCTCTGGCAAATTCCCTCTTTCCCAAGTA
* *
36638045 AACCAAGTACCTAAGAAGCCAATATCTGTCAGTTGACATTCCTCCAAAACTTCCCTAAACTCCAC
520 AACCAAGTACCTAAGAAGCCAATATCCGTCAGTTGACATTCCTCCAAAACTTCCCTAAACTCCGC
* ** * * * * *
36638110 CATCCTGCTCTCTTCTCTTGGTTCACCACCCACATTCTCGAAGGAATAAAGTATCACATTAAAAG
585 CATCCTGCTCTCCTCTCTTGGCGCACCACCCACCTTCTCGAAGGAATAAAGAATCTCGTTAAAAT
* * * *
36638175 CTCCACAAACCATCCAAGGTAGGCCTTGGAATCGATTTAGGTTTTTTAGTATGCCCCAAGTATTT
650 CTTCACAAACCATCCAAGGTAAGCCTTGGATTCGATTTAGATTTTTTAGTATGCCCCAAGTATTT
* *
36638240 CCTCTATTCTGCGCATAAGGGGAGCCATAAAAACCCT-TAAACCTATG
715 CCTCTATTCTACGCATAAAGGGAGCCATAAAAA-CCTATAAACCTATG
* * * * *
36638287 TATTTTTGTCCCCTAATTTCAACCAGTTTACCCT-A-CCCTTTTACACCCAATAAATTTTGCCTT
1 TATTTTTGTCCCCTAATTTCAACCAGTTTA-CCTGAGCCC-TTTGCTCCCAATACATTTCGTCTT
* * *
36638350 TATCAATCTCTAAATTAAGATGTACTCTAGTATCAA-CCAACTCAGCTATACTTTCATTAGTTCT
64 TATCAATCTCTAAATTAAGATGTACTCTAGTATCAATCCAAATCAGCCATACTTTCATCAGTTCT
* *
36638414 GTCTTGATCTAAGAGAAATTTTATTTTTTCTGTCAGCTTCTTCTTTCGCCCTTCCTTTTTTCTTT
129 GTCTTGATCTAAGAGAAATTTTATTTTTTCTATCAGCTTCTTCTTTCGCCCTTCC---CTT-TTT
* * *
36638479 TGTTTAATTCCAGTAGCCTATCTTACGAGCCGAATCTATAAAAATTTGAATTTTTCAAAAATATC
190 TGTCTAATTCCAGTAGCCCATCTTACGAGCCCAATCTATAAAAATTTGAATTTTTCAAAAATATC
* * * * *
36638544 ACCGCGATCAACTTGCCATAATCTTCTGATCTCATCCACATAA-ATTCTTCCTTCACCCACCACG
255 ACCGTGATCAACTTGCCACAATCATCTGATCTCATCCACACAATTTTCTTCCTTCACCCACCACG
36638608 CCTCAAATTGAAATACCTTCCTATACATGTTCTTTGATTCAATATCAATATCAAGCAGTATGGGA
320 CCTCAAATTGAAATACCTTCCTATACATGTTCTTTGATTCAATATCAATATCAAGCAGTATGGGA
* * *
36638673 TAGTGATCGGAAAAA-AATGCGGTAAATGGTGAAAAACTGCTGTCGGGAACGTATCCCTCCACTC
385 TAGTGATCGGAAAAAGAATGCGGTAAATGGTGAAAAACTGCTGTTGGAAACATATCCCTCCACTC
*
36638737 TAAGTTTGCCACACCCCTATCAAGCCTTTCATGTATATTAGTCTCTGGCAAATTCCCTCTTTCCC
450 TAAGTTCGCCACACCCCTATCAAGCCTTTCATGTATATTAGTCTCTGGCAAATTCCCTCTTTCCC
* *
36638802 AAGTAAACCAAGTACTTAAGAAGCTAATATCCGTCAGTTGACATTCCTCCAAAACTTCCCTAAAC
515 AAGTAAACCAAGTACCTAAGAAGCCAATATCCGTCAGTTGACATTCCTCCAAAACTTCCCTAAAC
36638867 TCCGCCATCCTGCTCTCCTCTCTTGGCGCACCACCCACCTTCTCGAAGGAATAAAGAATCTCGTT
580 TCCGCCATCCTGCTCTCCTCTCTTGGCGCACCACCCACCTTCTCGAAGGAATAAAGAATCTCGTT
* *
36638932 AAAATCTTCACAAACTATCCAAGGTAAGCCTTGGATTTGATTTAGATTTTTTAGTATGCCCCAAG
645 AAAATCTTCACAAACCATCCAAGGTAAGCCTTGGATTCGATTTAGATTTTTTAGTATGCCCCAAG
* * * *
36638997 TATTTCATCTATTCTACACATAAAAGGGAGACATAAAAACCTGTAAACCTATG
710 TATTTCCTCTATTCTACGCAT-AAAGGGAGCCATAAAAACCTATAAACCTATG
* * *
36639050 TA-TTTT-TCCCCTAATTTCAACCAGTTTACTTGAGCCCTTTGCTCCTAATAGATTTCGTCTTTA
1 TATTTTTGTCCCCTAATTTCAACCAGTTTACCTGAGCCCTTTGCTCCCAATACATTTCGTCTTTA
*
36639113 TCAATCTCTAAATTAAGTTGTACTCTAGTAT-AATCCAAATCAGCCATACTTTCATCAGTTCTGT
66 TCAATCTCTAAATTAAGATGTACTCTAGTATCAATCCAAATCAGCCATACTTTCATCAGTTCTGT
* *
36639177 CTTGATCTAAGAGAAATTTTATTTTTTCTATCAGCTTCTTCTTTCACCCTTCCCTTTTTTATCTA
131 CTTGATCTAAGAGAAATTTTATTTTTTCTATCAGCTTCTTCTTTCGCCCTTCCCTTTTTTGTCTA
* * ** *
36639242 ATTCCAGTAGCCCATCTTATGAGCCCAATCTGTAAAAAAATGAATTTTTCAAAAATATCACTGTG
196 ATTCCAGTAGCCCATCTTACGAGCCCAATCTATAAAAATTTGAATTTTTCAAAAATATCACCGTG
* *
36639307 ATCAACTTGCCACAATCATCTGATCTCATCCACACAATTTTCTTCCTTCACACACCACACCTCAA
261 ATCAACTTGCCACAATCATCTGATCTCATCCACACAATTTTCTTCCTTCACCCACCACGCCTCAA
* *
36639372 ATCGAAATACCTTCCTAGACATGTTCTTTGATTCAATATCAATATCAAGCAGTATGGGATAGTGA
326 ATTGAAATACCTTCCTATACATGTTCTTTGATTCAATATCAATATCAAGCAGTATGGGATAGTGA
* * * * *
36639437 TC-GAAAAAGGAATGCAGTGAATGGTGAAAAACTGCTGTTGGTAACATATCCTTCCACTCTATGT
391 TCGGAAAAA-GAATGCGGTAAATGGTGAAAAACTGCTGTTGGAAACATATCCCTCCACTCTAAGT
* *
36639501 TCGCCACACCCCTATCAAGTCTTTCATGTATATTAGTCTCTAGCAAATTCCCTCTTTCCCAAGTA
455 TCGCCACACCCCTATCAAGCCTTTCATGTATATTAGTCTCTGGCAAATTCCCTCTTTCCCAAGTA
* * * *
36639566 AACCAAGTACCTAAGAAGCCAATATCCATCAATTGACATTCCTCCAAAATTTCCCTAAACTCCGT
520 AACCAAGTACCTAAGAAGCCAATATCCGTCAGTTGACATTCCTCCAAAACTTCCCTAAACTCCGC
* * *
36639631 AATCCTGCTCTCCTCTCTTAGCGCACCACCCACCTTCTCGAAGGAATAAAGAATCTCGTTAAAGT
585 CATCCTGCTCTCCTCTCTTGGCGCACCACCCACCTTCTCGAAGGAATAAAGAATCTCGTTAAAAT
* * * *
36639696 CTCCATAAACCATCCAAGGTAAGCCTTGGATTCGATTTATATTTTTTAGTATGCCCCAAGTATTG
650 CTTCACAAACCATCCAAGGTAAGCCTTGGATTCGATTTAGATTTTTTAGTATGCCCCAAGTATTT
* *
36639761 CCTCTATTCTGA-TCATAAAGGGAGCCATAAAAACCCATAAACCTATG
715 CCTCTATTCT-ACGCATAAAGGGAGCCATAAAAACCTATAAACCTATG
* * * *
36639808 TACTTTTGTCCCCTAATTTCAACCAGTTTACCCGAGCCCTTTGCTCCCACTTCATTTCGTCTTTA
1 TATTTTTGTCCCCTAATTTCAACCAGTTTACCTGAGCCCTTTGCTCCCAATACATTTCGTCTTTA
* * *
36639873 TTAATCTCTAAATTAAGATGTACTCTAGTATCAA-CCAAATCAACCATACTTTCATCAGTTCAGT
66 TCAATCTCTAAATTAAGATGTACTCTAGTATCAATCCAAATCAGCCATACTTTCATCAGTTCTGT
* * * *
36639937 CTTGATCTAAGAGAAATTTTATTTTTACTGTCAGCTTCTTCTTTCACCCTTCCCTTTTTTCTCTA
131 CTTGATCTAAGAGAAATTTTATTTTTTCTATCAGCTTCTTCTTTCGCCCTTCCCTTTTTTGTCTA
* * * **
36640002 ATTCCAATAGCCCATCTTACGAGCCCAATCTATAAAAAATTGAATTTTTCAAAAAT-GCACCACG
196 ATTCCAGTAGCCCATCTTACGAGCCCAATCTATAAAAATTTGAATTTTTCAAAAATATCACCGTG
* * * *
36640066 GTCAACTTGCCGCAATCGTCTGATCTCATCCACACAAATTTT-TTCCTTCACCCACCATGCCTCA
261 ATCAACTTGCCACAATCATCTGATCTCATCCACAC-AATTTTCTTCCTTCACCCACCACGCCTCA
* * * * *
36640130 AATCGAAATACCTCCCTATACATGTTCTTTGATTCAATATCAATATCAAGTAGTATAGGATAGTA
325 AATTGAAATACCTTCCTATACATGTTCTTTGATTCAATATCAATATCAAGCAGTATGGGATAGTG
* * * *
36640195 ACCGGAAAAAGAATGCGGTAAATGGTGAAAAACTACTATTGGAAACATATCCGTCCACTCTAAGT
390 ATCGGAAAAAGAATGCGGTAAATGGTGAAAAACTGCTGTTGGAAACATATCCCTCCACTCTAAGT
* * * * *
36640260 TTGCCACACCCCTATCAAGCCTTTCTTGTACATTAGTCTCTGGAAAATTCCTTCTTTCCCAAGTA
455 TCGCCACACCCCTATCAAGCCTTTCATGTATATTAGTCTCTGGCAAATTCCCTCTTTCCCAAGTA
*
36640325 AACCAAGTACCTAAGAAGCCAATATCCGTCAGTTGACATTCCTCCAAAACTTTCCTAAACTCCGC
520 AACCAAGTACCTAAGAAGCCAATATCCGTCAGTTGACATTCCTCCAAAACTTCCCTAAACTCCGC
* * * *
36640390 CATCCTGCTCTGCTCTCTTGGCGCACCACCCACTTTCTCGAAGGGATAAATAATCTCGTTAAAAT
585 CATCCTGCTCTCCTCTCTTGGCGCACCACCCACCTTCTCGAAGGAATAAAGAATCTCGTTAAAAT
36640455 C-TCTACAAACCATCCAAGGTAAGCCTTGGATTCGATTTAGATTTTTTAGTATGCCCCAAGTATT
650 CTTC-ACAAACCATCCAAGGTAAGCCTTGGATTCGATTTAGATTTTTTAGTATGCCCCAAGTATT
* * * *
36640519 TCCTCTATTCTGCGCATAAGGGGAGCTATAAAAA-CTCGTAAACCTATG
714 TCCTCTATTCTACGCATAAAGGGAGCCATAAAAACCT-ATAAACCTATG
*
36640567 TATTTTTGTCCCCTAATTTCAACCAGTTTACTTGAGCCCTATT-CTCCCAATACATTTCGTCTTT
1 TATTTTTGTCCCCTAATTTCAACCAGTTTACCTGAGCCCT-TTGCTCCCAATACATTTCGTCTTT
* * * *
36640631 ATAAATCTCTAAATTAAAATGTACTCTAGTGTCAAT-CAAATCAGCCATACTTTCATCAGTTTTG
65 ATCAATCTCTAAATTAAGATGTACTCTAGTATCAATCCAAATCAGCCATACTTTCATCAGTTCTG
* *
36640695 TCTTTATCTAAGAGAAATTTTATTTTTTCTATTAGC-T-TT-TTTCGCCC-TCCCTTTTTTTGTC
130 TCTTGATCTAAGAGAAATTTTATTTTTTCTATCAGCTTCTTCTTTCGCCCTTCCC-TTTTTTGTC
** * * *
36640756 TAATTCCAACAGCCCATCTTATGATCCCAATCTATAAAAATTTGAATTTTTCAAAAATATCACTG
194 TAATTCCAGTAGCCCATCTTACGAGCCCAATCTATAAAAATTTGAATTTTTCAAAAATATCACCG
*
36640821 TGATCAACTTGCCACAATCGTTCT-ATCTCATCCACACAATTTTCTTCCTTCACCCACCACGCCT
259 TGATCAACTTGCCACAATC-ATCTGATCTCATCCACACAATTTTCTTCCTTCACCCACCACGCCT
* * *
36640885 CAAATTGAAATACCTTCCTACACATGTCCTTTGATTCAATATTAATATCAAGCAGTATGGGATAG
323 CAAATTGAAATACCTTCCTATACATGTTCTTTGATTCAATATCAATATCAAGCAGTATGGGATAG
* ** * *
36640950 TGATCGGAAAAAGAATGCGGTAAATGGTG-AAAATTATTGTTGGAAACATATCCGTCCACTTTAA
388 TGATCGGAAAAAGAATGCGGTAAATGGTGAAAAACTGCTGTTGGAAACATATCCCTCCACTCTAA
** * * *
36641014 GTTCGCCACACCTTTATCAAGCCTTTCATGTATTTTAGTCTCCGACAAATTCCCTCTTTCCCAAG
453 GTTCGCCACACCCCTATCAAGCCTTTCATGTATATTAGTCTCTGGCAAATTCCCTCTTTCCCAAG
* * * * * *
36641079 TAAACCAAGTACCTAAGAAACAAATTTCCATCACTTGAAATTCCTCCAAAACTTCCCTAAACTCC
518 TAAACCAAGTACCTAAGAAGCCAATATCCGTCAGTTGACATTCCTCCAAAACTTCCCTAAACTCC
* * ** *
36641144 TCCATCCTGCTTTGTTCTCTTGGCGCACCACCCACCTTCTCGAAGGAATAAAGAATATCGTTAAA
583 GCCATCCTGCTCTCCTCTCTTGGCGCACCACCCACCTTCTCGAAGGAATAAAGAATCTCGTTAAA
* * *
36641209 ATC-TCTACAAACCAT-CAAAGTAAGCCTTGGATTCGATTTAGATTTTTTAGTATTCCCTAAGTA
648 ATCTTC-ACAAACCATCCAAGGTAAGCCTTGGATTCGATTTAGATTTTTTAGTATGCCCCAAGTA
* * * *
36641272 TTTCCTCTATTCTGCGTA-AAAGGGGAGTCATAAAAACCCATAAACCT
712 TTTCCTCTATTCTACGCATAAA-GGGAGCCATAAAAACCTATAAACCT
36641319 TAATTCCTTT
Statistics
Matches: 2722, Mismatches: 274, Indels: 71
0.89 0.09 0.02
Matches are distributed among these distances:
753 3 0.00
754 98 0.04
755 85 0.03
756 293 0.11
757 242 0.09
758 127 0.05
759 947 0.35
760 241 0.09
761 153 0.06
762 407 0.15
763 126 0.05
ACGTcount: A:0.30, C:0.26, G:0.12, T:0.33
Consensus pattern (761 bp):
TATTTTTGTCCCCTAATTTCAACCAGTTTACCTGAGCCCTTTGCTCCCAATACATTTCGTCTTTA
TCAATCTCTAAATTAAGATGTACTCTAGTATCAATCCAAATCAGCCATACTTTCATCAGTTCTGT
CTTGATCTAAGAGAAATTTTATTTTTTCTATCAGCTTCTTCTTTCGCCCTTCCCTTTTTTGTCTA
ATTCCAGTAGCCCATCTTACGAGCCCAATCTATAAAAATTTGAATTTTTCAAAAATATCACCGTG
ATCAACTTGCCACAATCATCTGATCTCATCCACACAATTTTCTTCCTTCACCCACCACGCCTCAA
ATTGAAATACCTTCCTATACATGTTCTTTGATTCAATATCAATATCAAGCAGTATGGGATAGTGA
TCGGAAAAAGAATGCGGTAAATGGTGAAAAACTGCTGTTGGAAACATATCCCTCCACTCTAAGTT
CGCCACACCCCTATCAAGCCTTTCATGTATATTAGTCTCTGGCAAATTCCCTCTTTCCCAAGTAA
ACCAAGTACCTAAGAAGCCAATATCCGTCAGTTGACATTCCTCCAAAACTTCCCTAAACTCCGCC
ATCCTGCTCTCCTCTCTTGGCGCACCACCCACCTTCTCGAAGGAATAAAGAATCTCGTTAAAATC
TTCACAAACCATCCAAGGTAAGCCTTGGATTCGATTTAGATTTTTTAGTATGCCCCAAGTATTTC
CTCTATTCTACGCATAAAGGGAGCCATAAAAACCTATAAACCTATG
Found at i:36644310 original size:77 final size:76
Alignment explanation
Indices: 36644217--36644359 Score: 232
Period size: 77 Copynumber: 1.9 Consensus size: 76
36644207 TTTTCCTGCA
* *
36644217 TTTTCTATAGAGCATTTTTCAAGGTAGGGTGAGAAAGCTTTAGTCCAAAGGTTTCTTGTTGTTTT
1 TTTTCTATAGAGCATTTTTCAAGGTAGAGTGAAAAAGCTTTAGTCCAAAGGTTTCTTGTTGTTTT
36644282 TAGCTATGTTC
66 TAGCTATGTTC
* * *
36644293 TTTTCTACTAGAGCATTTTTTAAGGTAGAGTGAAAAAGCTTTATTCTAAAGGTTTCTTGTTGTTT
1 TTTTCTA-TAGAGCATTTTTCAAGGTAGAGTGAAAAAGCTTTAGTCCAAAGGTTTCTTGTTGTTT
36644358 TT
65 TT
36644360 TTGCTAGGTT
Statistics
Matches: 61, Mismatches: 5, Indels: 1
0.91 0.07 0.01
Matches are distributed among these distances:
76 7 0.11
77 54 0.89
ACGTcount: A:0.24, C:0.10, G:0.20, T:0.45
Consensus pattern (76 bp):
TTTTCTATAGAGCATTTTTCAAGGTAGAGTGAAAAAGCTTTAGTCCAAAGGTTTCTTGTTGTTTT
TAGCTATGTTC
Found at i:36646426 original size:41 final size:41
Alignment explanation
Indices: 36646369--36646463 Score: 181
Period size: 41 Copynumber: 2.3 Consensus size: 41
36646359 ATTGAAATTT
36646369 GTGATCTGAATCAGGCTATAAGCCTAGCAGGCTAAGTACCG
1 GTGATCTGAATCAGGCTATAAGCCTAGCAGGCTAAGTACCG
*
36646410 GTGATCTGAATCAGGCTATAAGCCTAGCAGGCTAAGTGCCG
1 GTGATCTGAATCAGGCTATAAGCCTAGCAGGCTAAGTACCG
36646451 GTGATCTGAATCA
1 GTGATCTGAATCA
36646464 AAGGAACGAA
Statistics
Matches: 53, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 53 1.00
ACGTcount: A:0.28, C:0.21, G:0.27, T:0.23
Consensus pattern (41 bp):
GTGATCTGAATCAGGCTATAAGCCTAGCAGGCTAAGTACCG
Found at i:36653902 original size:41 final size:41
Alignment explanation
Indices: 36653845--36654017 Score: 301
Period size: 41 Copynumber: 4.2 Consensus size: 41
36653835 GTTTGGAATT
36653845 GGTGATCTGAATCAGGCTATAAGCCTAGCAGGCTAAGTGCC
1 GGTGATCTGAATCAGGCTATAAGCCTAGCAGGCTAAGTGCC
36653886 GGTGATCTGAATCAGGCTATAAGCCTAGCAGGCTAAGTGCC
1 GGTGATCTGAATCAGGCTATAAGCCTAGCAGGCTAAGTGCC
* *
36653927 GGTGATCTGAATCAGGCTATAAGCCTAGTAGGCTAAATGCC
1 GGTGATCTGAATCAGGCTATAAGCCTAGCAGGCTAAGTGCC
* * *
36653968 GGTGATATGAATCAGGTTATAAACCTAGCAGGCTAAGTGCC
1 GGTGATCTGAATCAGGCTATAAGCCTAGCAGGCTAAGTGCC
36654009 GGTGATCTG
1 GGTGATCTG
36654018 GATATGTTAA
Statistics
Matches: 124, Mismatches: 8, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
41 124 1.00
ACGTcount: A:0.28, C:0.20, G:0.29, T:0.24
Consensus pattern (41 bp):
GGTGATCTGAATCAGGCTATAAGCCTAGCAGGCTAAGTGCC
Found at i:36661433 original size:9 final size:9
Alignment explanation
Indices: 36661415--36661451 Score: 56
Period size: 9 Copynumber: 4.1 Consensus size: 9
36661405 TATAGTTTGA
36661415 TATTCGAAT
1 TATTCGAAT
*
36661424 TATTCAAAT
1 TATTCGAAT
*
36661433 TATTCGAGT
1 TATTCGAAT
36661442 TATTCGAAT
1 TATTCGAAT
36661451 T
1 T
36661452 TGAAAACTCA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
9 24 1.00
ACGTcount: A:0.32, C:0.11, G:0.11, T:0.46
Consensus pattern (9 bp):
TATTCGAAT
Found at i:36661520 original size:9 final size:9
Alignment explanation
Indices: 36661503--36661533 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
36661493 TCAAGTTGAT
36661503 TCGAATAAC
1 TCGAATAAC
*
36661512 TCGATTAAC
1 TCGAATAAC
36661521 TCGAATAAC
1 TCGAATAAC
36661530 TCGA
1 TCGA
36661534 TTCGTTTAAC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.39, C:0.23, G:0.13, T:0.26
Consensus pattern (9 bp):
TCGAATAAC
Found at i:36662308 original size:20 final size:20
Alignment explanation
Indices: 36662283--36662334 Score: 77
Period size: 20 Copynumber: 2.6 Consensus size: 20
36662273 AAGTTTATGT
36662283 TAAGTAAATGAAATGGAAAG
1 TAAGTAAATGAAATGGAAAG
* *
36662303 TAAGTAAATGGAATGGTAAG
1 TAAGTAAATGAAATGGAAAG
*
36662323 AAAGTAAATGAA
1 TAAGTAAATGAA
36662335 GTGGTACACA
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.54, C:0.00, G:0.25, T:0.21
Consensus pattern (20 bp):
TAAGTAAATGAAATGGAAAG
Found at i:36662339 original size:20 final size:19
Alignment explanation
Indices: 36662284--36662340 Score: 69
Period size: 20 Copynumber: 2.8 Consensus size: 19
36662274 AGTTTATGTT
* *
36662284 AAGTAAATGAAATGGAAAGT
1 AAGTAAATG-AATGGTAAGA
36662304 AAGTAAATGGAATGGTAAGA
1 AAGTAAAT-GAATGGTAAGA
36662324 AAGTAAATGAAGTGGTA
1 AAGTAAATGAA-TGGTA
36662341 CACAGTTTAT
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
19 3 0.09
20 29 0.88
21 1 0.03
ACGTcount: A:0.51, C:0.00, G:0.28, T:0.21
Consensus pattern (19 bp):
AAGTAAATGAATGGTAAGA
Found at i:36666614 original size:32 final size:31
Alignment explanation
Indices: 36666578--36666652 Score: 80
Period size: 32 Copynumber: 2.4 Consensus size: 31
36666568 CACACGCTTG
*
36666578 TGTGGCCTACACACCCTACCTAGCACATCCCA
1 TGTGGCC-ACACACCCTACCTAGCACAGCCCA
* * * *
36666610 TGTGGTCCACACACCTTATCTAGCATAGCCCT
1 TGTGG-CCACACACCCTACCTAGCACAGCCCA
36666642 TGTGGCC-CACA
1 TGTGGCCACACA
36666653 AAACCTGGCA
Statistics
Matches: 37, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
30 4 0.11
31 2 0.05
32 29 0.78
33 2 0.05
ACGTcount: A:0.23, C:0.39, G:0.16, T:0.23
Consensus pattern (31 bp):
TGTGGCCACACACCCTACCTAGCACAGCCCA
Found at i:36676823 original size:71 final size:71
Alignment explanation
Indices: 36676716--36676852 Score: 202
Period size: 71 Copynumber: 1.9 Consensus size: 71
36676706 AATTTGATTA
* * * * * *
36676716 TGCTCACTCAAGCTGTCGGGAATTCGCAATACATGTTGGATCACAGTCATCGATAAAGAATAATT
1 TGCTCACTCAAGCTATCGAGAATCCACAACACATGTTGGATCACAGCCATCGATAAAGAATAATT
36676781 TAATGT
66 TAATGT
* *
36676787 TGCTCACTCAAGCTATCGAGAATCCACAACATATGTTGGATCCCAGCCATCGATAAAGAATAATT
1 TGCTCACTCAAGCTATCGAGAATCCACAACACATGTTGGATCACAGCCATCGATAAAGAATAATT
36676852 T
66 T
36676853 CTATTCAAAC
Statistics
Matches: 58, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
71 58 1.00
ACGTcount: A:0.34, C:0.21, G:0.18, T:0.28
Consensus pattern (71 bp):
TGCTCACTCAAGCTATCGAGAATCCACAACACATGTTGGATCACAGCCATCGATAAAGAATAATT
TAATGT
Found at i:36677893 original size:19 final size:19
Alignment explanation
Indices: 36677841--36677893 Score: 54
Period size: 19 Copynumber: 2.8 Consensus size: 19
36677831 ATATTTAGTT
* *
36677841 TAATAATTAATTAATTAAT
1 TAATAATTAACTAATTAAC
*
36677860 TAAT-CTTAACTTAATTAAC
1 TAATAATTAAC-TAATTAAC
*
36677879 TAATAGTTAACTAAT
1 TAATAATTAACTAAT
36677894 ATTAACCTTG
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
18 4 0.14
19 19 0.68
20 5 0.18
ACGTcount: A:0.47, C:0.08, G:0.02, T:0.43
Consensus pattern (19 bp):
TAATAATTAACTAATTAAC
Found at i:36682981 original size:15 final size:14
Alignment explanation
Indices: 36682952--36682986 Score: 52
Period size: 15 Copynumber: 2.4 Consensus size: 14
36682942 AGGAAAGAAT
*
36682952 GATGAGAAGTGAGG
1 GATGATAAGTGAGG
36682966 GATGATAAGATGAGG
1 GATGATAAG-TGAGG
36682981 GATGAT
1 GATGAT
36682987 TGAAGAATGA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 8 0.42
15 11 0.58
ACGTcount: A:0.37, C:0.00, G:0.43, T:0.20
Consensus pattern (14 bp):
GATGATAAGTGAGG
Found at i:36685843 original size:25 final size:24
Alignment explanation
Indices: 36685815--36685865 Score: 84
Period size: 25 Copynumber: 2.1 Consensus size: 24
36685805 ATTAAGCAGG
36685815 TCCTTTACAATCATTTTCATAGCTT
1 TCCTTTACAATCATTTTCATAG-TT
*
36685840 TCCTTTACAATCCTTTTCATAGTT
1 TCCTTTACAATCATTTTCATAGTT
36685864 TC
1 TC
36685866 ATAACATAGT
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
24 4 0.16
25 21 0.84
ACGTcount: A:0.22, C:0.25, G:0.04, T:0.49
Consensus pattern (24 bp):
TCCTTTACAATCATTTTCATAGTT
Found at i:36698484 original size:68 final size:68
Alignment explanation
Indices: 36698406--36698610 Score: 365
Period size: 68 Copynumber: 3.0 Consensus size: 68
36698396 GAAGATAATT
* *
36698406 TCTCACTTTCTCTATTCTCCTCTCTATGTTACGACATTGGATCCCCCATGTTGCGACATAGCATC
1 TCTCACTTTCTCTATTCTACTCTCTATGTTGCGACATTGGATCCCCCATGTTGCGACATAGCATC
36698471 CAG
66 CAG
*
36698474 TCTCACTTTCTCTATTCTGCTCTCTATGTTGCGACATTGGATCCCCCATGTTGCGACATAGCATC
1 TCTCACTTTCTCTATTCTACTCTCTATGTTGCGACATTGGATCCCCCATGTTGCGACATAGCATC
36698539 CAG
66 CAG
* *
36698542 TCTCACTTTCTCTATTCTACTCCCTATGTTGCGACATTGGATCCCCCATGTTGTGACATAGCATC
1 TCTCACTTTCTCTATTCTACTCTCTATGTTGCGACATTGGATCCCCCATGTTGCGACATAGCATC
36698607 CAG
66 CAG
36698610 T
1 T
36698611 ATTGACCCAA
Statistics
Matches: 132, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
68 132 1.00
ACGTcount: A:0.19, C:0.31, G:0.15, T:0.36
Consensus pattern (68 bp):
TCTCACTTTCTCTATTCTACTCTCTATGTTGCGACATTGGATCCCCCATGTTGCGACATAGCATC
CAG
Found at i:36702733 original size:39 final size:39
Alignment explanation
Indices: 36702690--36702805 Score: 169
Period size: 39 Copynumber: 2.9 Consensus size: 39
36702680 AACATGTTTC
*
36702690 TGAGTATTGTGATATATGCTTGAATGTTATGTGATTAAA
1 TGAGTATTGTGATATATGCTTAAATGTTATGTGATTAAA
*
36702729 TGAGTATTGTGATATATGCTTAAATGTTATGTGATTATA
1 TGAGTATTGTGATATATGCTTAAATGTTATGTGATTAAA
* * * *
36702768 TGTGTAATGTGATATATGCTTAAAAGTGAATGTGATTA
1 TGAGTATTGTGATATATGCTTAAATGT-TATGTGATTA
36702806 CCATTTAAAT
Statistics
Matches: 70, Mismatches: 6, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
39 61 0.87
40 9 0.13
ACGTcount: A:0.32, C:0.03, G:0.22, T:0.43
Consensus pattern (39 bp):
TGAGTATTGTGATATATGCTTAAATGTTATGTGATTAAA
Found at i:36712784 original size:29 final size:29
Alignment explanation
Indices: 36712751--36712814 Score: 76
Period size: 30 Copynumber: 2.2 Consensus size: 29
36712741 TAATCCACCA
36712751 CCCAACTTTTTG-AAAATTACAATTTTGCC
1 CCCAAC-TTTTGCAAAATTACAATTTTGCC
* * *
36712780 CCCAAACTTTTGCATAATTACACTTTTGTC
1 CCC-AACTTTTGCAAAATTACAATTTTGCC
36712810 CCCAA
1 CCCAA
36712815 GCTCGGAAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
29 10 0.33
30 20 0.67
ACGTcount: A:0.30, C:0.28, G:0.06, T:0.36
Consensus pattern (29 bp):
CCCAACTTTTGCAAAATTACAATTTTGCC
Found at i:36712788 original size:30 final size:30
Alignment explanation
Indices: 36712758--36712814 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
36712748 CCACCCAACT
36712758 TTTTG-AAAATTACAATTTTGCCCCCAAAC
1 TTTTGCAAAATTACAATTTTGCCCCCAAAC
* * *
36712787 TTTTGCATAATTACACTTTTGTCCCCAA
1 TTTTGCAAAATTACAATTTTGCCCCCAA
36712815 GCTCGGAAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
29 5 0.21
30 19 0.79
ACGTcount: A:0.30, C:0.25, G:0.07, T:0.39
Consensus pattern (30 bp):
TTTTGCAAAATTACAATTTTGCCCCCAAAC
Found at i:36722001 original size:13 final size:13
Alignment explanation
Indices: 36721983--36722009 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
36721973 GTGATATAGG
36721983 TGATATCTAAATA
1 TGATATCTAAATA
36721996 TGATATCTAAATA
1 TGATATCTAAATA
36722009 T
1 T
36722010 TTAAGATATT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.44, C:0.07, G:0.07, T:0.41
Consensus pattern (13 bp):
TGATATCTAAATA
Found at i:36726671 original size:11 final size:11
Alignment explanation
Indices: 36726651--36726698 Score: 55
Period size: 11 Copynumber: 4.5 Consensus size: 11
36726641 TATGAATACA
36726651 TTTTTA-AAAT
1 TTTTTATAAAT
36726661 TTTTTATAAAT
1 TTTTTATAAAT
*
36726672 TTTTT-TAACTT
1 TTTTTATAA-AT
*
36726683 TTTTTATTAAT
1 TTTTTATAAAT
36726694 TTTTT
1 TTTTT
36726699 TGAATTATGC
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
10 9 0.28
11 21 0.66
12 2 0.06
ACGTcount: A:0.27, C:0.02, G:0.00, T:0.71
Consensus pattern (11 bp):
TTTTTATAAAT
Found at i:36726678 original size:22 final size:22
Alignment explanation
Indices: 36726651--36726699 Score: 71
Period size: 22 Copynumber: 2.2 Consensus size: 22
36726641 TATGAATACA
36726651 TTTTTAAAATTTTTTATAAATT
1 TTTTTAAAATTTTTTATAAATT
** *
36726673 TTTTTAACTTTTTTTATTAATT
1 TTTTTAAAATTTTTTATAAATT
36726695 TTTTT
1 TTTTT
36726700 GAATTATGCG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.27, C:0.02, G:0.00, T:0.71
Consensus pattern (22 bp):
TTTTTAAAATTTTTTATAAATT
Found at i:36726687 original size:10 final size:10
Alignment explanation
Indices: 36726651--36726704 Score: 54
Period size: 10 Copynumber: 5.1 Consensus size: 10
36726641 TATGAATACA
*
36726651 TTTTTAAAAT
1 TTTTTTAAAT
36726661 TTTTTATAAAT
1 TTTTT-TAAAT
*
36726672 TTTTTTAACT
1 TTTTTTAAAT
36726682 TTTTTTATTAAT
1 TTTTTTA--AAT
*
36726694 TTTTTTGAAT
1 TTTTTTAAAT
36726704 T
1 T
36726705 ATGCGTGAAT
Statistics
Matches: 37, Mismatches: 4, Indels: 6
0.79 0.09 0.13
Matches are distributed among these distances:
10 20 0.54
11 9 0.24
12 8 0.22
ACGTcount: A:0.28, C:0.02, G:0.02, T:0.69
Consensus pattern (10 bp):
TTTTTTAAAT
Found at i:36727932 original size:18 final size:16
Alignment explanation
Indices: 36727905--36727943 Score: 51
Period size: 18 Copynumber: 2.3 Consensus size: 16
36727895 CTTGAATTTT
36727905 TTTTAAATTTCTCTATAA
1 TTTTAAATTT-TCTA-AA
*
36727923 TTTTATATTTTCTAAA
1 TTTTAAATTTTCTAAA
36727939 TTTTA
1 TTTTA
36727944 CATAATTTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
16 7 0.35
17 4 0.20
18 9 0.45
ACGTcount: A:0.31, C:0.08, G:0.00, T:0.62
Consensus pattern (16 bp):
TTTTAAATTTTCTAAA
Found at i:36728999 original size:31 final size:31
Alignment explanation
Indices: 36728961--36729060 Score: 141
Period size: 31 Copynumber: 3.3 Consensus size: 31
36728951 ACTACCAAAA
*
36728961 TAGTCACTTTTGTTTCTCTGGTGTTACATTT
1 TAGTCACTTTTGTTTCTCTGATGTTACATTT
36728992 TAGTCACTTTTGTTTCTCTGATGTTACATTT
1 TAGTCACTTTTGTTTCTCTGATGTTACATTT
* ***
36729023 TAGTCACTTATG-TT-TGAAATGTTACATTT
1 TAGTCACTTTTGTTTCTCTGATGTTACATTT
36729052 TAGTCACTT
1 TAGTCACTT
36729061 ACGTTGTCAT
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
29 21 0.33
30 2 0.03
31 41 0.64
ACGTcount: A:0.19, C:0.15, G:0.14, T:0.52
Consensus pattern (31 bp):
TAGTCACTTTTGTTTCTCTGATGTTACATTT
Found at i:36729084 original size:31 final size:29
Alignment explanation
Indices: 36728985--36729086 Score: 91
Period size: 31 Copynumber: 3.4 Consensus size: 29
36728975 TCTCTGGTGT
* *
36728985 TACATTTTAGTCACTTTTGTT-TCTCTGATG
1 TACATTTTAGTCACTTATGTTGTC-ATG-TG
**
36729015 TTACATTTTAGTCACTTATGTTTGAAATGT-
1 -TACATTTTAGTCACTTATG-TTGTCATGTG
*
36729045 TACATTTTAGTCACTTACGTTGTCATGTTG
1 TACATTTTAGTCACTTATGTTGTCATG-TG
36729075 TAACATTTTAGT
1 T-ACATTTTAGT
36729087 TACTGAATGT
Statistics
Matches: 59, Mismatches: 7, Indels: 10
0.78 0.09 0.13
Matches are distributed among these distances:
28 6 0.10
29 19 0.32
30 1 0.02
31 29 0.49
32 4 0.07
ACGTcount: A:0.23, C:0.14, G:0.14, T:0.50
Consensus pattern (29 bp):
TACATTTTAGTCACTTATGTTGTCATGTG
Found at i:36729269 original size:21 final size:20
Alignment explanation
Indices: 36729236--36729275 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
36729226 TTTGACATTA
36729236 AAAAGAGAAGGAGAATGAAGG
1 AAAAGAGAAGGAGAA-GAAGG
* *
36729257 AAAATAGAGGGAGAAGAAG
1 AAAAGAGAAGGAGAAGAAG
36729276 AAGAGAATGG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 4 0.24
21 13 0.76
ACGTcount: A:0.57, C:0.00, G:0.38, T:0.05
Consensus pattern (20 bp):
AAAAGAGAAGGAGAAGAAGG
Found at i:36731476 original size:13 final size:13
Alignment explanation
Indices: 36731458--36731482 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
36731448 TCTCGATTTA
36731458 ATCAATCTAATCC
1 ATCAATCTAATCC
36731471 ATCAATCTAATC
1 ATCAATCTAATC
36731483 AAATTCAAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.28, G:0.00, T:0.32
Consensus pattern (13 bp):
ATCAATCTAATCC
Found at i:36735384 original size:30 final size:28
Alignment explanation
Indices: 36735348--36735405 Score: 80
Period size: 30 Copynumber: 2.0 Consensus size: 28
36735338 GGACTTAAAA
*
36735348 AATATAAAAATACAATATTTTAAATATTTT
1 AATATAAAAATA-AATATATTAAA-ATTTT
*
36735378 AATATAAAAATAATTATATTAAAATTTT
1 AATATAAAAATAAATATATTAAAATTTT
36735406 TATTAAATTA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
28 5 0.19
29 9 0.35
30 12 0.46
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.43
Consensus pattern (28 bp):
AATATAAAAATAAATATATTAAAATTTT
Found at i:36735459 original size:37 final size:37
Alignment explanation
Indices: 36735386--36735477 Score: 130
Period size: 37 Copynumber: 2.5 Consensus size: 37
36735376 TTAATATAAA
* *
36735386 AATAATTATATTAAAATTTTTATTAAATTATATTTAAT
1 AATAATTATATTAAAA-TATGATTAAATTATATTTAAT
*
36735424 AATAATTATATTAAAATATGATTAAATTATTTTTAAT
1 AATAATTATATTAAAATATGATTAAATTATATTTAAT
**
36735461 AATAATCCTATTAAAAT
1 AATAATTATATTAAAAT
36735478 TTAATAATAA
Statistics
Matches: 49, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
37 33 0.67
38 16 0.33
ACGTcount: A:0.49, C:0.02, G:0.01, T:0.48
Consensus pattern (37 bp):
AATAATTATATTAAAATATGATTAAATTATATTTAAT
Found at i:36735616 original size:16 final size:16
Alignment explanation
Indices: 36735595--36735648 Score: 65
Period size: 16 Copynumber: 3.4 Consensus size: 16
36735585 TGAATTATTG
36735595 ATTACAACTCTATTTC
1 ATTACAACTCTATTTC
**
36735611 ATTACAGTTCTATTAT-
1 ATTACAACTCTATT-TC
*
36735627 ATTACAACTCTATTCC
1 ATTACAACTCTATTTC
36735643 ATTACA
1 ATTACA
36735649 TTTCAAAATC
Statistics
Matches: 31, Mismatches: 5, Indels: 4
0.77 0.12 0.10
Matches are distributed among these distances:
16 30 0.97
17 1 0.03
ACGTcount: A:0.33, C:0.22, G:0.02, T:0.43
Consensus pattern (16 bp):
ATTACAACTCTATTTC
Found at i:36737675 original size:18 final size:17
Alignment explanation
Indices: 36737654--36737696 Score: 68
Period size: 17 Copynumber: 2.5 Consensus size: 17
36737644 ATTTAAATTT
36737654 ATTAAAAATTATAAAAAA
1 ATTAAAAA-TATAAAAAA
*
36737672 ATTAAATATATAAAAAA
1 ATTAAAAATATAAAAAA
36737689 ATTAAAAA
1 ATTAAAAA
36737697 ACACTAAAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
17 16 0.70
18 7 0.30
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (17 bp):
ATTAAAAATATAAAAAA
Found at i:36737704 original size:19 final size:18
Alignment explanation
Indices: 36737654--36737712 Score: 57
Period size: 17 Copynumber: 3.3 Consensus size: 18
36737644 ATTTAAATTT
**
36737654 ATTAAAAATTATAAAAAA
1 ATTAAAAAACATAAAAAA
* *
36737672 ATT-AAATATATAAAAAA
1 ATTAAAAAACATAAAAAA
36737689 ATTAAAAAACACTAAAAAA
1 ATTAAAAAACA-TAAAAAA
*
36737708 TTTAA
1 ATTAA
36737713 TTTTATAAAA
Statistics
Matches: 34, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
17 15 0.44
18 8 0.24
19 11 0.32
ACGTcount: A:0.69, C:0.03, G:0.00, T:0.27
Consensus pattern (18 bp):
ATTAAAAAACATAAAAAA
Found at i:36737738 original size:17 final size:17
Alignment explanation
Indices: 36737714--36737765 Score: 52
Period size: 18 Copynumber: 3.0 Consensus size: 17
36737704 AAAATTTAAT
36737714 TTTA-TAAAAATAATAA
1 TTTATTAAAAATAATAA
*
36737730 TTTATTAAAACATAAAAA
1 TTTATTAAAA-ATAATAA
* *
36737748 TTAATAAAAAATATATAA
1 TTTATTAAAAATA-ATAA
36737766 CAACCCTTTA
Statistics
Matches: 29, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
16 4 0.14
17 8 0.28
18 17 0.59
ACGTcount: A:0.63, C:0.02, G:0.00, T:0.35
Consensus pattern (17 bp):
TTTATTAAAAATAATAA
Found at i:36737749 original size:18 final size:16
Alignment explanation
Indices: 36737714--36737757 Score: 52
Period size: 17 Copynumber: 2.6 Consensus size: 16
36737704 AAAATTTAAT
*
36737714 TTTATAAAAATAATAA
1 TTTATAAAAATAAAAA
36737730 TTTATTAAAACATAAAAA
1 TTTA-TAAAA-ATAAAAA
*
36737748 TTAATAAAAA
1 TTTATAAAAA
36737758 ATATATAACA
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
16 5 0.21
17 10 0.42
18 9 0.38
ACGTcount: A:0.64, C:0.02, G:0.00, T:0.34
Consensus pattern (16 bp):
TTTATAAAAATAAAAA
Found at i:36738142 original size:11 final size:11
Alignment explanation
Indices: 36738126--36738249 Score: 98
Period size: 11 Copynumber: 11.2 Consensus size: 11
36738116 TTTAAATTTA
36738126 AAAATATTTTT
1 AAAATATTTTT
36738137 AAAATACTTTTTT
1 AAAATA--TTTTT
* * *
36738150 TAATTTTTAATTTT
1 AAAATATT--TT-T
36738164 AAAATATTTTT
1 AAAATATTTTT
36738175 AAAATATTTTT
1 AAAATATTTTT
36738186 AAAATACTTTTT
1 AAAATA-TTTTT
**
36738198 TTAAT-TTTTT
1 AAAATATTTTT
36738208 ---A-A-TTTT
1 AAAATATTTTT
36738214 AAAATATTTTT
1 AAAATATTTTT
36738225 AAAATATTTTT
1 AAAATATTTTT
36738236 AAAATACTTTTT
1 AAAATA-TTTTT
36738248 AA
1 AA
36738250 TTTTTAAAAT
Statistics
Matches: 92, Mismatches: 8, Indels: 25
0.74 0.06 0.20
Matches are distributed among these distances:
6 4 0.04
7 1 0.01
9 1 0.01
10 6 0.07
11 47 0.51
12 17 0.18
13 10 0.11
14 6 0.07
ACGTcount: A:0.40, C:0.02, G:0.00, T:0.57
Consensus pattern (11 bp):
AAAATATTTTT
Found at i:36738165 original size:39 final size:38
Alignment explanation
Indices: 36738074--36738185 Score: 160
Period size: 38 Copynumber: 3.0 Consensus size: 38
36738064 AATAAATATA
* *
36738074 TTTATTTTTTAATTTTAAAATATTTTT-ACATAC--TT
1 TTTAATTTTTAATTTTAAAATATTTTTAAAATACTTTT
*
36738109 TTTAATTTTTAAATTTAAAAATATTTTTAAAATACTTTT
1 TTTAATTTTT-AATTTTAAAATATTTTTAAAATACTTTT
36738148 TTTAATTTTTAATTTTAAAATATTTTTAAAATA-TTTT
1 TTTAATTTTTAATTTTAAAATATTTTTAAAATACTTTT
36738185 T
1 T
36738186 AAAATACTTT
Statistics
Matches: 69, Mismatches: 4, Indels: 6
0.87 0.05 0.08
Matches are distributed among these distances:
35 9 0.13
36 16 0.23
37 10 0.14
38 22 0.32
39 12 0.17
ACGTcount: A:0.37, C:0.03, G:0.00, T:0.61
Consensus pattern (38 bp):
TTTAATTTTTAATTTTAAAATATTTTTAAAATACTTTT
Found at i:36738198 original size:50 final size:50
Alignment explanation
Indices: 36738126--36738269 Score: 240
Period size: 50 Copynumber: 2.9 Consensus size: 50
36738116 TTTAAATTTA
36738126 AAAATATTTTTAAAATACTTTTTTTAA-TTTTTAATTTTAAAATATTTTT
1 AAAATATTTTTAAAATACTTTTTTTAATTTTTTAATTTTAAAATATTTTT
36738175 AAAATATTTTTAAAATACTTTTTTTAATTTTTTAATTTTAAAATATTTTT
1 AAAATATTTTTAAAATACTTTTTTTAATTTTTTAATTTTAAAATATTTTT
*
36738225 AAAATATTTTTAAAATAC--TTTTTAATTTTTAAAATTTTTAAAATA
1 AAAATATTTTTAAAATACTTTTTTTAATTTTT-TAA-TTTTAAAATA
36738270 AAAATGGGTC
Statistics
Matches: 91, Mismatches: 1, Indels: 5
0.94 0.01 0.05
Matches are distributed among these distances:
48 12 0.13
49 29 0.32
50 50 0.55
ACGTcount: A:0.41, C:0.02, G:0.00, T:0.57
Consensus pattern (50 bp):
AAAATATTTTTAAAATACTTTTTTTAATTTTTTAATTTTAAAATATTTTT
Found at i:36738220 original size:39 final size:39
Alignment explanation
Indices: 36738171--36738269 Score: 139
Period size: 39 Copynumber: 2.5 Consensus size: 39
36738161 TTTAAAATAT
**
36738171 TTTTAAAATATTTTTAAAATACTTTTTTTAAT-TTTTTAA
1 TTTTAAAATATTTTTAAAATA-TTTTTAAAATATTTTTAA
36738210 TTTTAAAATATTTTTAAAATATTTTTAAAATACTTTTTAA
1 TTTTAAAATATTTTTAAAATATTTTTAAAATA-TTTTTAA
*
36738250 TTTTTAAA-ATTTTTAAAATA
1 TTTTAAAATATTTTTAAAATA
36738270 AAAATGGGTC
Statistics
Matches: 55, Mismatches: 3, Indels: 4
0.89 0.05 0.06
Matches are distributed among these distances:
38 8 0.15
39 33 0.60
40 14 0.25
ACGTcount: A:0.40, C:0.02, G:0.00, T:0.58
Consensus pattern (39 bp):
TTTTAAAATATTTTTAAAATATTTTTAAAATATTTTTAA
Found at i:36738262 original size:8 final size:9
Alignment explanation
Indices: 36738158--36738268 Score: 55
Period size: 11 Copynumber: 11.3 Consensus size: 9
36738148 TTTAATTTTT
*
36738158 AATTTTAAA
1 AATTTTTAA
36738167 ATATTTTTAAA
1 A-ATTTTT-AA
36738178 ATATTTTTAAA
1 A-ATTTTT-AA
**
36738189 ATACTTTTTTT
1 A-A-TTTTTAA
*
36738200 AATTTTT-T
1 AATTTTTAA
*
36738208 AATTTTAAA
1 AATTTTTAA
36738217 ATATTTTTAAA
1 A-ATTTTT-AA
36738228 ATATTTTTAA
1 A-ATTTTTAA
*
36738238 AATACTTTT-T
1 AAT--TTTTAA
36738248 AATTTTTAA
1 AATTTTTAA
36738257 AATTTTTAA
1 AATTTTTAA
36738266 AAT
1 AAT
36738269 AAAAATGGGT
Statistics
Matches: 85, Mismatches: 8, Indels: 18
0.77 0.07 0.16
Matches are distributed among these distances:
8 11 0.13
9 21 0.25
10 17 0.20
11 31 0.36
12 5 0.06
ACGTcount: A:0.41, C:0.02, G:0.00, T:0.57
Consensus pattern (9 bp):
AATTTTTAA
Found at i:36739151 original size:40 final size:41
Alignment explanation
Indices: 36739107--36739197 Score: 148
Period size: 41 Copynumber: 2.2 Consensus size: 41
36739097 AAAAATTTGC
* *
36739107 CACAAGTTTTGTAC-TTTTTGAAAATTTAACCCTTCATATT
1 CACAAATTCTGTACTTTTTTGAAAATTTAACCCTTCATATT
36739147 CACAAATTCTGTACTTTTTTGAAAATTTAACCCTTCATATT
1 CACAAATTCTGTACTTTTTTGAAAATTTAACCCTTCATATT
*
36739188 TACAAATTCT
1 CACAAATTCT
36739198 ATCAATTTGA
Statistics
Matches: 47, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
40 12 0.26
41 35 0.74
ACGTcount: A:0.32, C:0.19, G:0.05, T:0.44
Consensus pattern (41 bp):
CACAAATTCTGTACTTTTTTGAAAATTTAACCCTTCATATT
Found at i:36750208 original size:132 final size:132
Alignment explanation
Indices: 36749965--36750211 Score: 332
Period size: 132 Copynumber: 1.9 Consensus size: 132
36749955 CAGCTCGCAT
* ** * * *
36749965 ACCTACGTTCCCAACTGATGTTTAAAGGTTAGAGGAGTTATACTTACAACCTTCATTTATTTGAG
1 ACCTACGTTACCAACTGATGTTTAAAGGCCAGAGGAGTTATACTCACAACCTTCACTTATTTAAG
* * *
36750030 TAACCTGAGTTAAGCTCACTACTCCAGAACAGCTTGCGGACCTACGCTCCCAGTTGATAGCTCAC
66 TAACCTGAGTTAAGCTCACTACTCCAGAACAGCTCGCGAACATACGCTCCCAGTTGATAGCTCAC
36750095 TG
131 TG
* * * *
36750097 ACCTATGTTACCAGCTGATGTTTAAAGGCCAGATGAGTTATACTCATAACCTTCACTTATTTAAG
1 ACCTACGTTACCAACTGATGTTTAAAGGCCAGAGGAGTTATACTCACAACCTTCACTTATTTAAG
** * * *
36750162 TAAGTTGAGTTAAGCTCACTATTCTAGAATAGCTCGCGAACATACGCTCC
66 TAACCTGAGTTAAGCTCACTACTCCAGAACAGCTCGCGAACATACGCTCC
36750212 AACTGATAAA
Statistics
Matches: 97, Mismatches: 18, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
132 97 1.00
ACGTcount: A:0.29, C:0.23, G:0.17, T:0.30
Consensus pattern (132 bp):
ACCTACGTTACCAACTGATGTTTAAAGGCCAGAGGAGTTATACTCACAACCTTCACTTATTTAAG
TAACCTGAGTTAAGCTCACTACTCCAGAACAGCTCGCGAACATACGCTCCCAGTTGATAGCTCAC
TG
Found at i:36757519 original size:21 final size:21
Alignment explanation
Indices: 36757463--36757534 Score: 99
Period size: 21 Copynumber: 3.4 Consensus size: 21
36757453 GGTAGTTATA
*
36757463 AAATGTTCGGTGATTTGAAAC
1 AAATGTACGGTGATTTGAAAC
* *
36757484 ATATGTATTGGTGATTTGAAAC
1 AAATGTA-CGGTGATTTGAAAC
*
36757506 AGATGTACGGTGATTTGAAAC
1 AAATGTACGGTGATTTGAAAC
36757527 AAATGTAC
1 AAATGTAC
36757535 TGGTAGTTAG
Statistics
Matches: 44, Mismatches: 6, Indels: 2
0.85 0.12 0.04
Matches are distributed among these distances:
21 25 0.57
22 19 0.43
ACGTcount: A:0.35, C:0.08, G:0.24, T:0.33
Consensus pattern (21 bp):
AAATGTACGGTGATTTGAAAC
Found at i:36760112 original size:16 final size:16
Alignment explanation
Indices: 36760087--36760133 Score: 53
Period size: 16 Copynumber: 3.0 Consensus size: 16
36760077 GGCCCATATC
*
36760087 AAATAAATAAACAAAA
1 AAATATATAAACAAAA
36760103 AAATATATAAA-AAATA
1 AAATATATAAACAAA-A
*
36760119 AAA-ATAAAAACAAAA
1 AAATATATAAACAAAA
36760134 TTATTAAAAG
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
15 10 0.37
16 17 0.63
ACGTcount: A:0.81, C:0.04, G:0.00, T:0.15
Consensus pattern (16 bp):
AAATATATAAACAAAA
Found at i:36760117 original size:23 final size:25
Alignment explanation
Indices: 36760082--36760128 Score: 64
Period size: 23 Copynumber: 2.0 Consensus size: 25
36760072 TGCCTGGCCC
36760082 ATATCAAATAAATAAACAA-AAAAAT
1 ATATCAAATAAATAAA-AATAAAAAT
36760107 ATAT-AAA-AAATAAAAATAAAAA
1 ATATCAAATAAATAAAAATAAAAA
36760129 CAAAATTATT
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
22 2 0.10
23 12 0.57
24 3 0.14
25 4 0.19
ACGTcount: A:0.77, C:0.04, G:0.00, T:0.19
Consensus pattern (25 bp):
ATATCAAATAAATAAAAATAAAAAT
Found at i:36760255 original size:26 final size:27
Alignment explanation
Indices: 36760214--36760264 Score: 86
Period size: 26 Copynumber: 1.9 Consensus size: 27
36760204 CAAACAGATC
*
36760214 CCAAATACCCACTTAACCTAGCCCAAA
1 CCAAATACCCAATTAACCTAGCCCAAA
36760241 CCAAA-ACCCAATTAACCTAGCCCA
1 CCAAATACCCAATTAACCTAGCCCA
36760265 GCTAATGTGG
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
26 18 0.78
27 5 0.22
ACGTcount: A:0.41, C:0.41, G:0.04, T:0.14
Consensus pattern (27 bp):
CCAAATACCCAATTAACCTAGCCCAAA
Found at i:36760681 original size:20 final size:19
Alignment explanation
Indices: 36760644--36760711 Score: 68
Period size: 20 Copynumber: 3.6 Consensus size: 19
36760634 TTTAAGGTGG
*
36760644 TTCTCTTTTCT--TTTTCT
1 TTCTCTTTTCTGCGTTTCT
36760661 TTCTCTTTCTCTGCGTTTCT
1 TTCTCTTT-TCTGCGTTTCT
* **
36760681 TTACTGTTTTCTTTGTTTCT
1 TT-CTCTTTTCTGCGTTTCT
36760701 TTCTCTTTTCT
1 TTCTCTTTTCT
36760712 ATACGAAAAA
Statistics
Matches: 42, Mismatches: 5, Indels: 6
0.79 0.09 0.11
Matches are distributed among these distances:
17 8 0.19
18 3 0.07
19 8 0.19
20 18 0.43
21 5 0.12
ACGTcount: A:0.01, C:0.24, G:0.06, T:0.69
Consensus pattern (19 bp):
TTCTCTTTTCTGCGTTTCT
Found at i:36761431 original size:24 final size:24
Alignment explanation
Indices: 36761395--36761440 Score: 56
Period size: 24 Copynumber: 1.9 Consensus size: 24
36761385 AATATTATAT
* *
36761395 AAATTTACCATGTTTTATTATTCA
1 AAATTTACCATGTATCATTATTCA
**
36761419 AAATTTATTATGTATCATTATT
1 AAATTTACCATGTATCATTATT
36761441 TAAATTTCCA
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
24 18 1.00
ACGTcount: A:0.35, C:0.09, G:0.04, T:0.52
Consensus pattern (24 bp):
AAATTTACCATGTATCATTATTCA
Found at i:36761763 original size:29 final size:28
Alignment explanation
Indices: 36761704--36761781 Score: 104
Period size: 28 Copynumber: 2.8 Consensus size: 28
36761694 CTCTTTCCAA
36761704 TATTTTAACATTTTAATTTATCTCAACT
1 TATTTTAACATTTTAATTTATCTCAACT
* *
36761732 TATTTCAACATTGTTAATTTAT-TCAAATT
1 TATTTTAACATT-TTAATTTATCTC-AACT
*
36761761 TATTTTAACCTTTTAATTTAT
1 TATTTTAACATTTTAATTTAT
36761782 ACATATTATA
Statistics
Matches: 44, Mismatches: 4, Indels: 4
0.85 0.08 0.08
Matches are distributed among these distances:
28 22 0.50
29 22 0.50
ACGTcount: A:0.32, C:0.12, G:0.01, T:0.55
Consensus pattern (28 bp):
TATTTTAACATTTTAATTTATCTCAACT
Found at i:36774205 original size:44 final size:44
Alignment explanation
Indices: 36774148--36774557 Score: 125
Period size: 44 Copynumber: 9.4 Consensus size: 44
36774138 TAATCCTATT
*
36774148 TCCCTG-AGATTACAGTGGAACGGATTAAAATAAAGGATCTTATC
1 TCCCTGAAG-TTACAGTGGAACAGATTAAAATAAAGGATCTTATC
* * ** *** *
36774192 TCTCTGAAGTTACAGTAGAGTAGA-TCGCAT-CAGG-TCTTATC
1 TCCCTGAAGTTACAGTGGAACAGATTAAAATAAAGGATCTTATC
* ** *
36774233 TCCCTG-AGATTACAGTGGAATAGACCGAAGAATTACA-GATCTTATC
1 TCCCTGAAG-TTACAGTGGAACAGA-TTAA-AA-TAAAGGATCTTATC
* * * * * *** * * *
36774279 TCCCTAAAATTACAGCGGAGCAGATTGAAGCCAATGATCCTATT
1 TCCCTGAAGTTACAGTGGAACAGATTAAAATAAAGGATCTTATC
* *
36774323 TCCCTG-AGATTACAGTGGAACGGATTAAAATAAATGATCTTATC
1 TCCCTGAAG-TTACAGTGGAACAGATTAAAATAAAGGATCTTATC
* * ** * * *
36774367 TCTCTGAAGTTACAGTAGAGTAGA-TCACAT-CAGG-TCTTATC
1 TCCCTGAAGTTACAGTGGAACAGATTAAAATAAAGGATCTTATC
* ** * *
36774408 TCCCTG-AGATTACAGTGGAATAGACCGAAGAATTACA-GATCTTTTC
1 TCCCTGAAG-TTACAGTGGAACAGA-TTAA-AA-TAAAGGATCTTATC
* ** * ** * *
36774454 TCACTG-AGATTACAGCT-GAGGAGATT--GATGCCAGTAATCTTATT
1 TCCCTGAAG-TTACAG-TGGAACAGATTAAAAT-AAAG-GATCTTATC
*
36774498 TCCCTG-AGATTACAGTGGAACGGATTAAAATAAAGGATCTTATC
1 TCCCTGAAG-TTACAGTGGAACAGATTAAAATAAAGGATCTTATC
* *
36774542 TCTCTAAAGTTACAGT
1 TCCCTGAAGTTACAGT
36774558 AGAGTAGATC
Statistics
Matches: 261, Mismatches: 78, Indels: 54
0.66 0.20 0.14
Matches are distributed among these distances:
40 4 0.02
41 51 0.20
42 8 0.03
43 11 0.04
44 117 0.45
45 13 0.05
46 55 0.21
47 2 0.01
ACGTcount: A:0.33, C:0.18, G:0.20, T:0.29
Consensus pattern (44 bp):
TCCCTGAAGTTACAGTGGAACAGATTAAAATAAAGGATCTTATC
Found at i:36774392 original size:175 final size:175
Alignment explanation
Indices: 36774096--36774794 Score: 1077
Period size: 175 Copynumber: 4.1 Consensus size: 175
36774086 AAAATGGTGA
*
36774096 ATCTGATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCCAGTAATCCTATTTCCCTGAGATTAC
1 ATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCCAGTAATCCTATTTCCCTGAGATTAC
36774161 AGTGGAACGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGG
66 AGTGGAACGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGG
36774226 TCTTATCTCCCTGAGATTACAGTGGAATAGACCGAAGAATTACAG
131 TCTTATCTCCCTGAGATTACAGTGGAATAGACCGAAGAATTACAG
* * * *
36774271 ATCTTATCTCCCTAAAATTACAGCGGAGCAGATTGAAGCCAATGATCCTATTTCCCTGAGATTAC
1 ATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCCAGTAATCCTATTTCCCTGAGATTAC
* *
36774336 AGTGGAACGGATTAAAATAAATGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCACATCAGG
66 AGTGGAACGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGG
36774401 TCTTATCTCCCTGAGATTACAGTGGAATAGACCGAAGAATTACAG
131 TCTTATCTCCCTGAGATTACAGTGGAATAGACCGAAGAATTACAG
* * * * * *
36774446 ATCTTTTCTCACTGAGATTACAGCTGAGGAGATTGATGCCAGTAATCTTATTTCCCTGAGATTAC
1 ATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCCAGTAATCCTATTTCCCTGAGATTAC
*
36774511 AGTGGAACGGATTAAAATAAAGGATCTTATCTCTCTAAAGTTACAGTAGAGTAGATCGCATCAGG
66 AGTGGAACGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGG
* *
36774576 TCTTATCTTCTTGAGATTACAGTGGAATAGACCGAAGAATTACAG
131 TCTTATCTCCCTGAGATTACAGTGGAATAGACCGAAGAATTACAG
* *
36774621 ATCTTA-----C--AG--T---GC--AGCAGATCGAAGCCAGTTATCCTATTTCCCTGAGATTAC
1 ATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCCAGTAATCCTATTTCCCTGAGATTAC
* * *
36774672 AGT-GAAGCGGATCAAAATAAAGGATCTTATCTCTCTGAATTTACAATAGAGTAGATCGCATCAG
66 AGTGGAA-CGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAG
36774736 GTCTTATCTCCCTGAGATTACAGTGGAATAGACCGAAGAAATTACAG
130 GTCTTATCTCCCTGAGATTACAGTGGAATAGACCGAAG-AATTACAG
*
36774783 AACTTATCTCCC
1 ATCTTATCTCCC
36774795 AAGCGGTGTA
Statistics
Matches: 482, Mismatches: 35, Indels: 22
0.89 0.06 0.04
Matches are distributed among these distances:
160 3 0.01
161 126 0.26
162 13 0.03
163 2 0.00
166 1 0.00
167 1 0.00
168 2 0.00
170 1 0.00
175 333 0.69
ACGTcount: A:0.33, C:0.19, G:0.20, T:0.28
Consensus pattern (175 bp):
ATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCCAGTAATCCTATTTCCCTGAGATTAC
AGTGGAACGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGG
TCTTATCTCCCTGAGATTACAGTGGAATAGACCGAAGAATTACAG
Found at i:36774695 original size:161 final size:162
Alignment explanation
Indices: 36774483--36774788 Score: 508
Period size: 161 Copynumber: 1.9 Consensus size: 162
36774473 GGAGATTGAT
* *
36774483 GCCAGTAATCTTATTTCCCTGAGATTACAGTGGAACGGATTAAAATAAAGGATCTTATCTCTCTA
1 GCCAGTAATCCTATTTCCCTGAGATTACAGTGGAACGGATCAAAATAAAGGATCTTATCTCTCTA
* * *
36774548 AAGTTACAGTAGAGTAGATCGCATCAGGTCTTATCTTCTTGAGATTACAGTGGAATAGACCGAAG
66 AAGTTACAATAGAGTAGATCGCATCAGGTCTTATCTCCCTGAGATTACAGTGGAATAGACCGAAG
*
36774613 -AATTACAGATCTTACAGTGCAGCAGATCGAA
131 AAATTACAGAACTTACAGTGCAGCAGATCGAA
*
36774644 GCCAGTTATCCTATTTCCCTGAGATTACAGT-GAAGCGGATCAAAATAAAGGATCTTATCTCTCT
1 GCCAGTAATCCTATTTCCCTGAGATTACAGTGGAA-CGGATCAAAATAAAGGATCTTATCTCTCT
* *
36774708 GAATTTACAATAGAGTAGATCGCATCAGGTCTTATCTCCCTGAGATTACAGTGGAATAGACCGAA
65 AAAGTTACAATAGAGTAGATCGCATCAGGTCTTATCTCCCTGAGATTACAGTGGAATAGACCGAA
36774773 GAAATTACAGAACTTA
130 GAAATTACAGAACTTA
36774789 TCTCCCAAGC
Statistics
Matches: 134, Mismatches: 9, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
160 3 0.02
161 118 0.88
162 13 0.10
ACGTcount: A:0.34, C:0.18, G:0.20, T:0.28
Consensus pattern (162 bp):
GCCAGTAATCCTATTTCCCTGAGATTACAGTGGAACGGATCAAAATAAAGGATCTTATCTCTCTA
AAGTTACAATAGAGTAGATCGCATCAGGTCTTATCTCCCTGAGATTACAGTGGAATAGACCGAAG
AAATTACAGAACTTACAGTGCAGCAGATCGAA
Found at i:36774887 original size:50 final size:51
Alignment explanation
Indices: 36774833--36774963 Score: 119
Period size: 50 Copynumber: 2.6 Consensus size: 51
36774823 ACAAGGGCGG
* * *
36774833 ATCTTGCTTCCCCAACATTGCAGTTAGAA-AGATTGAAGCTGCAATAATGA
1 ATCTTGCTTCCCCAACATTGCAGTTAGAACAGATTGAAGCTACAACAACGA
* * ** * *
36774883 ATCTTAC-T-GCCAAGTCGGTGCAG-TGGAACATATTGAAGCTACAACAACGA
1 ATCTTGCTTCCCCAA--CATTGCAGTTAGAACAGATTGAAGCTACAACAACGA
*
36774933 ATCTTGCTTCCCCGACATTGCAGTTA-AACAG
1 ATCTTGCTTCCCCAACATTGCAGTTAGAACAG
36774964 TTTAAAGTTC
Statistics
Matches: 59, Mismatches: 16, Indels: 12
0.68 0.18 0.14
Matches are distributed among these distances:
48 4 0.07
49 5 0.08
50 45 0.76
51 2 0.03
52 3 0.05
ACGTcount: A:0.32, C:0.23, G:0.19, T:0.26
Consensus pattern (51 bp):
ATCTTGCTTCCCCAACATTGCAGTTAGAACAGATTGAAGCTACAACAACGA
Found at i:36775228 original size:28 final size:27
Alignment explanation
Indices: 36775185--36775237 Score: 72
Period size: 28 Copynumber: 1.9 Consensus size: 27
36775175 GCCCAAATCA
36775185 AAAAATAAACAAAAAATATATAAAAAAT
1 AAAAATAAACAAAAAAT-TATAAAAAAT
*
36775213 AAAAATAAA-AACAAAATTATTAAAA
1 AAAAATAAACAA-AAAATTATAAAAA
36775238 GTCCATCAGT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
27 9 0.39
28 14 0.61
ACGTcount: A:0.77, C:0.04, G:0.00, T:0.19
Consensus pattern (27 bp):
AAAAATAAACAAAAAATTATAAAAAAT
Found at i:36776531 original size:24 final size:24
Alignment explanation
Indices: 36776495--36776540 Score: 56
Period size: 24 Copynumber: 1.9 Consensus size: 24
36776485 AATATTATAT
* *
36776495 AAATTTACCATGTTTTATTATTCA
1 AAATTTACCATGTATCATTATTCA
**
36776519 AAATTTATTATGTATCATTATT
1 AAATTTACCATGTATCATTATT
36776541 TAAATTTTCA
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
24 18 1.00
ACGTcount: A:0.35, C:0.09, G:0.04, T:0.52
Consensus pattern (24 bp):
AAATTTACCATGTATCATTATTCA
Done.