Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr09 ID=Chr09-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 70713020
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 1142373 characters in sequence are not A, C, G, or T
File 116 of 226
Found at i:39599492 original size:51 final size:49
Alignment explanation
Indices: 39599354--39599555 Score: 194
Period size: 51 Copynumber: 4.0 Consensus size: 49
39599344 TAAAAGTGAA
* *
39599354 AATG-ATGGTCACGTGTGTAGTACTATGTGCAGGCTACTA-CATGTACCGG
1 AATGTATGGTCACATGTGTAGTACTATGTGCAGGCTACTATGA-GTACC-G
*
39599403 AATG-ATAGGTCGCATGTGTAGTACTATGTGCAGGCTACTATGAGTACCG
1 AATGTAT-GGTCACATGTGTAGTACTATGTGCAGGCTACTATGAGTACCG
* * * * * *
39599452 AATAGTTTCGATCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTATCG
1 AAT-GTAT-GGTCACATGTGTAGTACTATGTGCAGGCTACTATGAGTACCG
* * * * *
39599503 GATGGTAATGGTAACATATGTAGTACTATGTGCAGGCTACTATGTGAACCG
1 AAT-GT-ATGGTCACATGTGTAGTACTATGTGCAGGCTACTATGAGTACCG
39599554 AA
1 AA
39599556 CATCATTGAT
Statistics
Matches: 126, Mismatches: 22, Indels: 8
0.81 0.14 0.05
Matches are distributed among these distances:
49 10 0.08
50 37 0.29
51 78 0.62
52 1 0.01
ACGTcount: A:0.27, C:0.16, G:0.27, T:0.30
Consensus pattern (49 bp):
AATGTATGGTCACATGTGTAGTACTATGTGCAGGCTACTATGAGTACCG
Found at i:39604664 original size:27 final size:27
Alignment explanation
Indices: 39604648--39604704 Score: 78
Period size: 27 Copynumber: 2.1 Consensus size: 27
39604638 CCTAAAAGGA
*
39604648 TTTGATATGTAGCAATGTCAGAAATGG
1 TTTGATATGTAGCAATGCCAGAAATGG
* **
39604675 TTTGGTATGTAGCAATATCAGAAATGG
1 TTTGATATGTAGCAATGCCAGAAATGG
39604702 TTT
1 TTT
39604705 ATGAATTAAC
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.32, C:0.07, G:0.25, T:0.37
Consensus pattern (27 bp):
TTTGATATGTAGCAATGCCAGAAATGG
Found at i:39617667 original size:23 final size:24
Alignment explanation
Indices: 39617641--39617693 Score: 74
Period size: 24 Copynumber: 2.2 Consensus size: 24
39617631 GAAAAATGAC
*
39617641 AGAAAATGG-GGAAG-AAAAGGAAA
1 AGAAAATGGTGG-AGCAAAAAGAAA
39617664 AGAAAATGGTGGAGCAAAAAGAAA
1 AGAAAATGGTGGAGCAAAAAGAAA
39617688 AGAAAA
1 AGAAAA
39617694 AACTATGCCA
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
23 11 0.41
24 16 0.59
ACGTcount: A:0.62, C:0.02, G:0.30, T:0.06
Consensus pattern (24 bp):
AGAAAATGGTGGAGCAAAAAGAAA
Found at i:39617782 original size:38 final size:38
Alignment explanation
Indices: 39617735--39617811 Score: 127
Period size: 38 Copynumber: 2.0 Consensus size: 38
39617725 GATAACTCCA
*
39617735 CAATCCCATATTTTCCTCCTAAAATCACTCCAACACTC
1 CAATCCCATATTTCCCTCCTAAAATCACTCCAACACTC
**
39617773 CAATCCCATATTTCCCTCCTAAAATCACTCTTACACTC
1 CAATCCCATATTTCCCTCCTAAAATCACTCCAACACTC
39617811 C
1 C
39617812 CCCACCACGC
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
38 36 1.00
ACGTcount: A:0.30, C:0.40, G:0.00, T:0.30
Consensus pattern (38 bp):
CAATCCCATATTTCCCTCCTAAAATCACTCCAACACTC
Found at i:39619062 original size:27 final size:27
Alignment explanation
Indices: 39619032--39619087 Score: 94
Period size: 27 Copynumber: 2.1 Consensus size: 27
39619022 TTTAAACATT
*
39619032 ATTTAAGCTACAATTTTTTATGTCAAG
1 ATTTAAGCTACAATTTTTGATGTCAAG
*
39619059 ATTTAAGCTACCATTTTTGATGTCAAG
1 ATTTAAGCTACAATTTTTGATGTCAAG
39619086 AT
1 AT
39619088 CACAAAACAC
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.32, C:0.12, G:0.12, T:0.43
Consensus pattern (27 bp):
ATTTAAGCTACAATTTTTGATGTCAAG
Found at i:39627132 original size:15 final size:15
Alignment explanation
Indices: 39627112--39627142 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
39627102 TTTTAAAAAT
39627112 TTTATAATAATAAAG
1 TTTATAATAATAAAG
39627127 TTTATAATAATAAAG
1 TTTATAATAATAAAG
39627142 T
1 T
39627143 ATATCATAAG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.52, C:0.00, G:0.06, T:0.42
Consensus pattern (15 bp):
TTTATAATAATAAAG
Found at i:39627151 original size:15 final size:15
Alignment explanation
Indices: 39627114--39627151 Score: 58
Period size: 15 Copynumber: 2.5 Consensus size: 15
39627104 TTAAAAATTT
*
39627114 TATAATAATAAAGTT
1 TATAATAATAAAGTA
39627129 TATAATAATAAAGTA
1 TATAATAATAAAGTA
*
39627144 TATCATAA
1 TATAATAA
39627152 GAGGCATTTA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.55, C:0.03, G:0.05, T:0.37
Consensus pattern (15 bp):
TATAATAATAAAGTA
Found at i:39627821 original size:22 final size:22
Alignment explanation
Indices: 39627796--39627841 Score: 58
Period size: 22 Copynumber: 2.1 Consensus size: 22
39627786 ATAATTTAAA
39627796 AATTAAAAGAAATT-AAAAAATT
1 AATTAAAA-AAATTAAAAAAATT
**
39627818 AATTTTAAAAATTAAAAAAATT
1 AATTAAAAAAATTAAAAAAATT
39627840 AA
1 AA
39627842 CATAAAGTAC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
21 5 0.24
22 16 0.76
ACGTcount: A:0.67, C:0.00, G:0.02, T:0.30
Consensus pattern (22 bp):
AATTAAAAAAATTAAAAAAATT
Found at i:39627839 original size:30 final size:29
Alignment explanation
Indices: 39627778--39627841 Score: 94
Period size: 31 Copynumber: 2.2 Consensus size: 29
39627768 TATATATCAT
*
39627778 ATTAATAAATAATTTAAAAATTAAAAGAA
1 ATTAAAAAATAATTTAAAAATTAAAAGAA
39627807 ATTAAAAAATTAATTTTAAAAATTAAAA-AA
1 ATTAAAAAA-TAA-TTTAAAAATTAAAAGAA
39627837 ATTAA
1 ATTAA
39627842 CATAAAGTAC
Statistics
Matches: 32, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
29 8 0.25
30 10 0.31
31 14 0.44
ACGTcount: A:0.66, C:0.00, G:0.02, T:0.33
Consensus pattern (29 bp):
ATTAAAAAATAATTTAAAAATTAAAAGAA
Found at i:39638022 original size:12 final size:12
Alignment explanation
Indices: 39638005--39638034 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
39637995 TTAGGCAGTT
*
39638005 ACACGGCCTAGC
1 ACACGGCCTAAC
39638017 ACACGGCCTAAC
1 ACACGGCCTAAC
39638029 ACACGG
1 ACACGG
39638035 GCGTGTGAGG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.30, C:0.40, G:0.23, T:0.07
Consensus pattern (12 bp):
ACACGGCCTAAC
Found at i:39639250 original size:16 final size:16
Alignment explanation
Indices: 39639222--39639263 Score: 54
Period size: 15 Copynumber: 2.8 Consensus size: 16
39639212 ATGATTTTTG
39639222 GATTAAA-TTGAAT-A
1 GATTAAATTTGAATGA
39639236 GAATTAAATTTGAATGA
1 G-ATTAAATTTGAATGA
39639253 GA-TAAATTTGA
1 GATTAAATTTGA
39639264 CTATATTGAT
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
14 1 0.04
15 15 0.60
16 7 0.28
17 2 0.08
ACGTcount: A:0.48, C:0.00, G:0.17, T:0.36
Consensus pattern (16 bp):
GATTAAATTTGAATGA
Found at i:39644060 original size:22 final size:22
Alignment explanation
Indices: 39644034--39644078 Score: 65
Period size: 22 Copynumber: 2.0 Consensus size: 22
39644024 ATTATGATAA
39644034 TTGATATGT-TGAGATTGATATT
1 TTGATATGTATGAGATT-ATATT
*
39644056 TTGATATGTATGCGATTATATT
1 TTGATATGTATGAGATTATATT
39644078 T
1 T
39644079 GTGTTGATCT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 15 0.71
23 6 0.29
ACGTcount: A:0.27, C:0.02, G:0.20, T:0.51
Consensus pattern (22 bp):
TTGATATGTATGAGATTATATT
Found at i:39654624 original size:59 final size:62
Alignment explanation
Indices: 39654546--39654662 Score: 154
Period size: 62 Copynumber: 1.9 Consensus size: 62
39654536 ATCACTTTAA
* * *
39654546 TATTAAATTAATATAATA-TT-TCT-CAAGATGAATATTAGAA-TAAATTTAATATTAAATCT
1 TATTAAATTAATAGAATATTTATCTACAAGATAAACATTA-AATTAAATTTAATATTAAATCT
39654605 TATTGAAA-TAATAGAATATTTATCTACAAGATAAACATTAAATTAAATTTAATATTAA
1 TATT-AAATTAATAGAATATTTATCTACAAGATAAACATTAAATTAAATTTAATATTAA
39654663 GATAATCATT
Statistics
Matches: 50, Mismatches: 3, Indels: 7
0.83 0.05 0.12
Matches are distributed among these distances:
59 13 0.26
60 5 0.10
61 5 0.10
62 27 0.54
ACGTcount: A:0.50, C:0.05, G:0.05, T:0.40
Consensus pattern (62 bp):
TATTAAATTAATAGAATATTTATCTACAAGATAAACATTAAATTAAATTTAATATTAAATCT
Found at i:39654688 original size:20 final size:18
Alignment explanation
Indices: 39654641--39654728 Score: 58
Period size: 19 Copynumber: 4.8 Consensus size: 18
39654631 CAAGATAAAC
39654641 ATTAAATTAA-ATTTAAT
1 ATTAAATTAATATTTAAT
39654658 ATTAAGA-TAATCATTTTAAT
1 ATTAA-ATTAAT-A-TTTAAT
**
39654678 ATTAAATTAATAAAATAAT
1 ATTAAATTAAT-ATTTAAT
*
39654697 ATT-AATATAAGTATTAAAT
1 ATTAAAT-TAA-TATTTAAT
*
39654716 -TTAATTTAATATT
1 ATTAAATTAATATT
39654729 AAGTTGTTAA
Statistics
Matches: 56, Mismatches: 7, Indels: 16
0.71 0.09 0.20
Matches are distributed among these distances:
17 12 0.21
18 9 0.16
19 18 0.32
20 17 0.30
ACGTcount: A:0.51, C:0.01, G:0.02, T:0.45
Consensus pattern (18 bp):
ATTAAATTAATATTTAAT
Found at i:39656389 original size:43 final size:43
Alignment explanation
Indices: 39656327--39656547 Score: 232
Period size: 43 Copynumber: 5.1 Consensus size: 43
39656317 AAAAAAAGCT
* * * *
39656327 GCTAAAGAACATGATCTTTAGTGGCGCTTCACCGACAAACGCC
1 GCTAAAGAACATGACCTTTAGCGGCGCTTTACCCACAAACGCC
*
39656370 GCTAAAGAACATGACCTTTAGCGGCGCTTTACCCATAAACGCC
1 GCTAAAGAACATGACCTTTAGCGGCGCTTTACCCACAAACGCC
* * * *
39656413 AG-TAAAGAACATGATCTTTAGCGGTGCTTTTA-TCACAAATGCC
1 -GCTAAAGAACATGACCTTTAGCGGCGC-TTTACCCACAAACGCC
* * * * *
39656456 GCTAAAGATCCTGACCTTTAGTGGCACTTTACCCACAAACACC
1 GCTAAAGAACATGACCTTTAGCGGCGCTTTACCCACAAACGCC
** * *
39656499 GCTAAAGAACATGACCTTTAGCACCGCTTTTA-TCACAACCGCC
1 GCTAAAGAACATGACCTTTAGCGGCGC-TTTACCCACAAACGCC
39656542 GCTAAA
1 GCTAAA
39656548 AGTACCGTTC
Statistics
Matches: 145, Mismatches: 28, Indels: 10
0.79 0.15 0.05
Matches are distributed among these distances:
42 5 0.03
43 131 0.90
44 9 0.06
ACGTcount: A:0.31, C:0.28, G:0.17, T:0.24
Consensus pattern (43 bp):
GCTAAAGAACATGACCTTTAGCGGCGCTTTACCCACAAACGCC
Found at i:39656457 original size:86 final size:86
Alignment explanation
Indices: 39656327--39656547 Score: 275
Period size: 86 Copynumber: 2.6 Consensus size: 86
39656317 AAAAAAAGCT
* * *
39656327 GCTAAAGAACATGATCTTTAGTGGCGC-TTCACCGACAAACGCCGCTAAAGAACATGACCTTTAG
1 GCTAAAGAACATGATCTTTAGCGGCGCTTTTATC-ACAAACGCCGCTAAAGAACATGACCTTTAG
* * *
39656391 CGGCGCTTTACCCATAAACGCC
65 CGGCACTTTACCCACAAACACC
* * * *
39656413 AG-TAAAGAACATGATCTTTAGCGGTGCTTTTATCACAAATGCCGCTAAAGATCCTGACCTTTAG
1 -GCTAAAGAACATGATCTTTAGCGGCGCTTTTATCACAAACGCCGCTAAAGAACATGACCTTTAG
*
39656477 TGGCACTTTACCCACAAACACC
65 CGGCACTTTACCCACAAACACC
* ** *
39656499 GCTAAAGAACATGACCTTTAGCACCGCTTTTATCACAACCGCCGCTAAA
1 GCTAAAGAACATGATCTTTAGCGGCGCTTTTATCACAAACGCCGCTAAA
39656548 AGTACCGTTC
Statistics
Matches: 115, Mismatches: 17, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
85 1 0.01
86 109 0.95
87 5 0.04
ACGTcount: A:0.31, C:0.28, G:0.17, T:0.24
Consensus pattern (86 bp):
GCTAAAGAACATGATCTTTAGCGGCGCTTTTATCACAAACGCCGCTAAAGAACATGACCTTTAGC
GGCACTTTACCCACAAACACC
Found at i:39661749 original size:39 final size:39
Alignment explanation
Indices: 39661690--39661797 Score: 180
Period size: 39 Copynumber: 2.7 Consensus size: 39
39661680 GTAAAATAAT
39661690 TTTTGCGGCGCTTTTTATAAAAATGCCGCTATCGCTTACC
1 TTTTGCGGCG-TTTTTATAAAAATGCCGCTATCGCTTACC
*
39661730 TTTTGCGGCGTTTTTATAAAAATGCTGCTATCGCTTACC
1 TTTTGCGGCGTTTTTATAAAAATGCCGCTATCGCTTACC
*
39661769 TTTTGCGGCGTTTTTATGAAAAACGCCGC
1 TTTTGCGGCGTTTTTAT-AAAAATGCCGC
39661798 AACGCTGCAA
Statistics
Matches: 64, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
39 45 0.70
40 19 0.30
ACGTcount: A:0.20, C:0.22, G:0.19, T:0.38
Consensus pattern (39 bp):
TTTTGCGGCGTTTTTATAAAAATGCCGCTATCGCTTACC
Found at i:39662215 original size:14 final size:14
Alignment explanation
Indices: 39662196--39662244 Score: 57
Period size: 14 Copynumber: 3.4 Consensus size: 14
39662186 ACCCCTGAAT
39662196 CCCTAACTCTTAAC
1 CCCTAACTCTTAAC
39662210 CCCTAACGTC-TAAC
1 CCCTAAC-TCTTAAC
39662224 CCCTAAAC-CTCTAAC
1 CCCT-AACTCT-TAAC
39662239 CCCTAA
1 CCCTAA
39662245 ACCTTAAATC
Statistics
Matches: 31, Mismatches: 0, Indels: 8
0.79 0.00 0.21
Matches are distributed among these distances:
13 1 0.03
14 17 0.55
15 13 0.42
ACGTcount: A:0.31, C:0.45, G:0.02, T:0.22
Consensus pattern (14 bp):
CCCTAACTCTTAAC
Found at i:39662238 original size:15 final size:15
Alignment explanation
Indices: 39662206--39662248 Score: 70
Period size: 15 Copynumber: 2.9 Consensus size: 15
39662196 CCCTAACTCT
*
39662206 TAACCCCT-AACGTC
1 TAACCCCTAAACCTC
39662220 TAACCCCTAAACCTC
1 TAACCCCTAAACCTC
39662235 TAACCCCTAAACCT
1 TAACCCCTAAACCT
39662249 TAAATCCCAA
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
14 8 0.30
15 19 0.70
ACGTcount: A:0.33, C:0.44, G:0.02, T:0.21
Consensus pattern (15 bp):
TAACCCCTAAACCTC
Found at i:39662463 original size:7 final size:7
Alignment explanation
Indices: 39662451--39662561 Score: 57
Period size: 7 Copynumber: 15.7 Consensus size: 7
39662441 AATAATTAAT
39662451 CTAAACC
1 CTAAACC
39662458 CTAAA-C
1 CTAAACC
*
39662464 CTTAA-C
1 CTAAACC
*
39662470 CTAACCC
1 CTAAACC
39662477 CTAAATCC
1 CTAAA-CC
39662485 CTAAACC
1 CTAAACC
*
39662492 CTAAATC
1 CTAAACC
*
39662499 CTTAACTC
1 CTAAAC-C
* *
39662507 TTAATCC
1 CTAAACC
***
39662514 CTAATGT
1 CTAAACC
*
39662521 CTAACCC
1 CTAAACC
39662528 CTAAACC
1 CTAAACC
*
39662535 CATAACCC
1 C-TAAACC
39662543 CT-AACC
1 CTAAACC
39662549 CTTAAACC
1 C-TAAACC
*
39662557 TTAAA
1 CTAAA
39662562 TCCCAACCCT
Statistics
Matches: 78, Mismatches: 20, Indels: 12
0.71 0.18 0.11
Matches are distributed among these distances:
6 13 0.17
7 44 0.56
8 21 0.27
ACGTcount: A:0.37, C:0.38, G:0.01, T:0.24
Consensus pattern (7 bp):
CTAAACC
Found at i:39662493 original size:15 final size:15
Alignment explanation
Indices: 39662469--39662517 Score: 55
Period size: 15 Copynumber: 3.3 Consensus size: 15
39662459 TAAACCTTAA
*
39662469 CCTAACCCCTAAATC
1 CCTAAACCCTAAATC
39662484 CCTAAACCCTAAAT-
1 CCTAAACCCTAAATC
* * *
39662498 CCTTAACTCTTAATC
1 CCTAAACCCTAAATC
39662513 CCTAA
1 CCTAA
39662518 TGTCTAACCC
Statistics
Matches: 28, Mismatches: 5, Indels: 2
0.80 0.14 0.06
Matches are distributed among these distances:
14 11 0.39
15 17 0.61
ACGTcount: A:0.35, C:0.39, G:0.00, T:0.27
Consensus pattern (15 bp):
CCTAAACCCTAAATC
Found at i:39662569 original size:21 final size:20
Alignment explanation
Indices: 39662523--39662587 Score: 76
Period size: 21 Copynumber: 3.1 Consensus size: 20
39662513 CCTAATGTCT
* *
39662523 AACCCCTAAACCCATAACCCC
1 AACCCTTAAA-CCATAATCCC
*
39662544 TAACCCTTAAACCTTAAATCCC
1 -AACCCTTAAACCAT-AATCCC
39662566 AACCCTTAAACCATAATCCC
1 AACCCTTAAACCATAATCCC
39662586 AA
1 AA
39662588 ATCCATACTC
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
20 8 0.21
21 16 0.42
22 14 0.37
ACGTcount: A:0.40, C:0.42, G:0.00, T:0.18
Consensus pattern (20 bp):
AACCCTTAAACCATAATCCC
Found at i:39662655 original size:295 final size:291
Alignment explanation
Indices: 39662092--39662675 Score: 756
Period size: 295 Copynumber: 2.0 Consensus size: 291
39662082 TATTATATTT
*
39662092 AATTTATTATTATCTCTTTTATAATTATATTATAAGAACATATTTAAAATATAAATTAAAAAAAT
1 AATTTATTATTATCTCTTTTACAATTATATTATAAGAACATATTTAAAATATAAATTAAAAAAAT
* * * *
39662157 AATTAATCTAAACCCAAAACCTTAACCCGACCCCTGAATCCCTAACTCTTAACCCCTAACGTCTA
66 AATTAATCTAAACCCAAAACCTTAACCCAACCCCTAAATCCCTAACCCTAAACCCCTAACGTCTA
* * * *
39662222 ACCCCTAAACCTCTAACCCCTAAACCTTAAATCCCAACCCTTAAACATAATCCATAATCTATAAT
131 ACCCCTAAACCTCTAACCCCTAAACCATAAACCCCAACCCTTAAACATAATCCATAAACCATAAT
* * *
39662287 CCCTAAATCCATACTCCCGAAACCTTAAAATATGAACTCCTAAACCGGCCTTATATATTAAATTA
196 CCCTAAATCCATACTCCCGAAACCTTAAAATATGAACTCCTAAACCGACCTTAAATATTAAATAA
*
39662352 ATCATATACCCT-AAACTAAAATCCCTAAATA
261 ATCATATACCCTAAAAC-AAAAACCCTAAATA
*
39662383 AATTTATTATTCTCTCTTTTACAA-T-TA-TATAAGAACATATTTAAAATATAAATT-AAAAAAT
1 AATTTATTATTATCTCTTTTACAATTATATTATAAGAACATATTTAAAATATAAATTAAAAAAAT
* * * *
39662444 AATTAATCTAAACCCTAAACCTTAACCTAACCCCTAAATCCCTAAACCCTAAATCCTTAAC-TCT
66 AATTAATCTAAACCCAAAACCTTAACCCAACCCCTAAATCCCT-AACCCTAAACCCCTAACGTC-
* ** *
39662508 TAATCCCT-AATGTCTAACCCCTAAACCCAT-AACCCCTAACCCTTAAACCTTAAATCCCAACCC
129 TAACCCCTAAACCTCTAACCCCTAAA-CCATAAACCCC-AACCCTTAAA-CAT-AAT-CC-A---
*
39662571 TTAAACCATAATCCC-AAATCCATACTCCCTAAACCTTAAAATA-GTAACTCCTAAACCGACCTT
185 -TAAACCATAATCCCTAAATCCATACTCCCGAAACCTTAAAATATG-AACTCCTAAACCGACCTT
*
39662634 AAATCTTAAATAAATCATATACCCTAAAACAAAAACCCTAAA
248 AAATATTAAATAAATCATATACCCTAAAACAAAAACCCTAAA
39662676 CTATAGTGAT
Statistics
Matches: 255, Mismatches: 24, Indels: 24
0.84 0.08 0.08
Matches are distributed among these distances:
287 68 0.27
288 60 0.24
289 4 0.02
290 4 0.02
291 24 0.09
292 1 0.00
294 1 0.00
295 77 0.30
296 16 0.06
ACGTcount: A:0.42, C:0.27, G:0.02, T:0.29
Consensus pattern (291 bp):
AATTTATTATTATCTCTTTTACAATTATATTATAAGAACATATTTAAAATATAAATTAAAAAAAT
AATTAATCTAAACCCAAAACCTTAACCCAACCCCTAAATCCCTAACCCTAAACCCCTAACGTCTA
ACCCCTAAACCTCTAACCCCTAAACCATAAACCCCAACCCTTAAACATAATCCATAAACCATAAT
CCCTAAATCCATACTCCCGAAACCTTAAAATATGAACTCCTAAACCGACCTTAAATATTAAATAA
ATCATATACCCTAAAACAAAAACCCTAAATA
Found at i:39663058 original size:41 final size:41
Alignment explanation
Indices: 39662953--39663173 Score: 225
Period size: 41 Copynumber: 5.4 Consensus size: 41
39662943 AAATGTTTTT
* ** * *
39662953 AAAACGCCGCTAAAACCCTTAGCATTAGCGGCACTTCTTCA
1 AAAACGCCGCTAAAGCCCCCAGCATTAGCGGCGCTTTTTCA
* *
39662994 AAAA-GCCGCTAAAACCCCGAGCATTAGCGGCGCTTTTTCA
1 AAAACGCCGCTAAAGCCCCCAGCATTAGCGGCGCTTTTTCA
* * *
39663034 AAAAGGCCGCTAAAGCCCCCAGCATTAGCGGTGCCTCTTT-A
1 AAAACGCCGCTAAAGCCCCCAGCATTAGCGGCG-CTTTTTCA
* * *
39663075 AAAACGTCGCTAAAGCCCCCAGCATTAGCGACGC-TTTTGA
1 AAAACGCCGCTAAAGCCCCCAGCATTAGCGGCGCTTTTTCA
** **
39663115 AAAAGCGCCGCTAAAAG-CCTGAGCATTAGCGGCGCTTTTTTG
1 AAAA-CGCCGCT-AAAGCCCCCAGCATTAGCGGCGCTTTTTCA
*
39663157 AAAACGCCGCGAAAGCC
1 AAAACGCCGCTAAAGCC
39663174 TGAAAAGGTA
Statistics
Matches: 153, Mismatches: 20, Indels: 14
0.82 0.11 0.07
Matches are distributed among these distances:
39 3 0.02
40 46 0.30
41 87 0.57
42 17 0.11
ACGTcount: A:0.30, C:0.30, G:0.21, T:0.19
Consensus pattern (41 bp):
AAAACGCCGCTAAAGCCCCCAGCATTAGCGGCGCTTTTTCA
Found at i:39663127 original size:82 final size:83
Alignment explanation
Indices: 39662953--39663173 Score: 254
Period size: 82 Copynumber: 2.7 Consensus size: 83
39662943 AAATGTTTTT
* * * * * *
39662953 AAAA-CGCCGCTAAAACCCTTAGCATTAGCGGCACTTCTTCAAAAA-GCCGCTAAAACCCCGAGC
1 AAAAGCGCCGCTAAAGCCCTCAGCATTAGCGGCGCTTCTTTAAAAACGCCGCTAAAGCCCCCAGC
*
39663016 ATTAGCGGCGCTTTTTCA
66 ATTAGCGACGCTTTTTCA
* * * *
39663034 AAAAG-GCCGCTAAAGCCCCCAGCATTAGCGGTGCCTCTTTAAAAACGTCGCTAAAGCCCCCAGC
1 AAAAGCGCCGCTAAAGCCCTCAGCATTAGCGGCGCTTCTTTAAAAACGCCGCTAAAGCCCCCAGC
*
39663098 ATTAGCGACGC-TTTTGA
66 ATTAGCGACGCTTTTTCA
* * * *
39663115 AAAAGCGCCGCTAAAAG-CCTGAGCATTAGCGGCGCTTTTTTGAAAACGCCGCGAAAGCC
1 AAAAGCGCCGCT-AAAGCCCTCAGCATTAGCGGCGCTTCTTTAAAAACGCCGCTAAAGCC
39663174 TGAAAAGGTA
Statistics
Matches: 116, Mismatches: 20, Indels: 7
0.81 0.14 0.05
Matches are distributed among these distances:
81 47 0.41
82 65 0.56
83 4 0.03
ACGTcount: A:0.30, C:0.30, G:0.21, T:0.19
Consensus pattern (83 bp):
AAAAGCGCCGCTAAAGCCCTCAGCATTAGCGGCGCTTCTTTAAAAACGCCGCTAAAGCCCCCAGC
ATTAGCGACGCTTTTTCA
Found at i:39663254 original size:26 final size:25
Alignment explanation
Indices: 39663220--39663270 Score: 75
Period size: 25 Copynumber: 2.0 Consensus size: 25
39663210 TTGTAACATT
*
39663220 TTTTCAAAAATTGCCGCTAATGCTCA
1 TTTTCAAAAA-CGCCGCTAATGCTCA
*
39663246 TTTTGAAAAACGCCGCTAATGCTCA
1 TTTTCAAAAACGCCGCTAATGCTCA
39663271 ATCTTTAGTG
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 14 0.61
26 9 0.39
ACGTcount: A:0.31, C:0.24, G:0.14, T:0.31
Consensus pattern (25 bp):
TTTTCAAAAACGCCGCTAATGCTCA
Found at i:39670995 original size:25 final size:25
Alignment explanation
Indices: 39670961--39671011 Score: 102
Period size: 25 Copynumber: 2.0 Consensus size: 25
39670951 TATACATGCC
39670961 ATAGCTCAAACATTGATCATCATAA
1 ATAGCTCAAACATTGATCATCATAA
39670986 ATAGCTCAAACATTGATCATCATAA
1 ATAGCTCAAACATTGATCATCATAA
39671011 A
1 A
39671012 ATACTGGACT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.45, C:0.20, G:0.08, T:0.27
Consensus pattern (25 bp):
ATAGCTCAAACATTGATCATCATAA
Found at i:39671544 original size:50 final size:50
Alignment explanation
Indices: 39671415--39671596 Score: 181
Period size: 50 Copynumber: 3.7 Consensus size: 50
39671405 GATAATAACA
* * * *
39671415 TGCCAAAGCCATGTCCCAGATATGGTCTTACATGGGATGTT-TCTTGTAC--
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGA-GTTCTCATAT-CGG
* * *
39671464 TGCCAATGCCATATCCTAGATATGGTCTTACATGGGAGTTCTCATATCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGAGTTCTCATATCGG
* * ** ** * *
39671514 TGCCCATGCCATCTCCCAGACATGGTCTTACGGGGGACCTCTCATCTTGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGAGTTCTCATATCGG
*
39671564 TGCCAATGCCATGTTCCAGACATGGTCTTACAT
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAT
39671597 AGGGCCATGT
Statistics
Matches: 110, Mismatches: 20, Indels: 5
0.81 0.15 0.04
Matches are distributed among these distances:
48 4 0.04
49 38 0.35
50 68 0.62
ACGTcount: A:0.21, C:0.26, G:0.22, T:0.30
Consensus pattern (50 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGAGTTCTCATATCGG
Found at i:39709965 original size:20 final size:20
Alignment explanation
Indices: 39709939--39710013 Score: 78
Period size: 20 Copynumber: 3.8 Consensus size: 20
39709929 TATTGTAAAA
39709939 AAGCTGTCAATATTGCAGAT
1 AAGCTGTCAATATTGCAGAT
* * * **
39709959 AAACTGTCAGTATTGTAGGC
1 AAGCTGTCAATATTGCAGAT
***
39709979 AAGCCACCAATATTGCAGAT
1 AAGCTGTCAATATTGCAGAT
39709999 AAGCTGTCAATATTG
1 AAGCTGTCAATATTG
39710014 TAGACAAAAT
Statistics
Matches: 39, Mismatches: 16, Indels: 0
0.71 0.29 0.00
Matches are distributed among these distances:
20 39 1.00
ACGTcount: A:0.35, C:0.17, G:0.20, T:0.28
Consensus pattern (20 bp):
AAGCTGTCAATATTGCAGAT
Found at i:39709971 original size:40 final size:40
Alignment explanation
Indices: 39709927--39710015 Score: 106
Period size: 40 Copynumber: 2.2 Consensus size: 40
39709917 ACAAACCACT
***
39709927 AGTATTGTAAAAAAGCTGTCAATATTGCAGATAAACTGTC
1 AGTATTGTAAAAAAGCCACCAATATTGCAGATAAACTGTC
*** *
39709967 AGTATTGTAGGCAAGCCACCAATATTGCAGATAAGCTGTC
1 AGTATTGTAAAAAAGCCACCAATATTGCAGATAAACTGTC
*
39710007 AATATTGTA
1 AGTATTGTA
39710016 GACAAAATGC
Statistics
Matches: 41, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
40 41 1.00
ACGTcount: A:0.37, C:0.15, G:0.19, T:0.29
Consensus pattern (40 bp):
AGTATTGTAAAAAAGCCACCAATATTGCAGATAAACTGTC
Found at i:39710003 original size:100 final size:99
Alignment explanation
Indices: 39709806--39710021 Score: 265
Period size: 100 Copynumber: 2.2 Consensus size: 99
39709796 CCAATAACAC
* * * *
39709806 ACCAA-ATTGTGGACAAACACAAGTATTGCAGACACGCTGCCAATATTGCAGATAAACTATTCGT
1 ACCAATATTGTGGACAAACACAAGTATTGCAAAAAAGCTGCCAATATTGCAGATAAACTAGTCGT
* *
39709870 GTTGTGGGCAAGCCACCAATATTGCAAACAAGCT
66 ATTGTAGGCAAGCCACCAATATTGCAAACAAGCT
* * * *
39709904 ACCAATATTTTGGACAAACCACTAGTATTGTAAAAAAGCTGTCAATATTGCAGATAAACT-GTCA
1 ACCAATATTGTGGACAAA-CACAAGTATTGCAAAAAAGCTGCCAATATTGCAGATAAACTAGTC-
* *
39709968 GTATTGTAGGCAAGCCACCAATATTGCAGATAAGCT
64 GTATTGTAGGCAAGCCACCAATATTGCAAACAAGCT
** *
39710004 GTCAATATTGTAGACAAA
1 ACCAATATTGTGGACAAA
39710022 ATGCCAGTAC
Statistics
Matches: 99, Mismatches: 16, Indels: 4
0.83 0.13 0.03
Matches are distributed among these distances:
98 5 0.05
99 13 0.13
100 81 0.82
ACGTcount: A:0.38, C:0.19, G:0.18, T:0.25
Consensus pattern (99 bp):
ACCAATATTGTGGACAAACACAAGTATTGCAAAAAAGCTGCCAATATTGCAGATAAACTAGTCGT
ATTGTAGGCAAGCCACCAATATTGCAAACAAGCT
Found at i:39712612 original size:27 final size:27
Alignment explanation
Indices: 39712581--39712754 Score: 119
Period size: 27 Copynumber: 6.5 Consensus size: 27
39712571 ATGCCCTTAA
39712581 AGGGTAAAATGACTAAAATACCCTCGAT
1 AGGGTAAAATGACTAAAATACCC-CGAT
* * *
39712609 -GGGTAAAATGACTGAAATGCCTTC-AT
1 AGGGTAAAATGACTAAAATACC-CCGAT
*
39712635 AGGGTAAAATGA-TCGAAATACCACCG-T
1 AGGGTAAAATGACT-AAAATACC-CCGAT
* * *
39712662 AGGGTAGAAT-ACAAAAATACCCCCAT
1 AGGGTAAAATGACTAAAATACCCCGAT
* *
39712688 AGGGTATAATGACCAAAATACCCCTG-T
1 AGGGTAAAATGACTAAAATACCCC-GAT
* ** *
39712715 AGAGTAAAATGACTGTAATGCCCCTG-T
1 AGGGTAAAATGACTAAAATACCCC-GAT
*
39712742 AGGATAAAATGAC
1 AGGGTAAAATGAC
39712755 CGTAATACCC
Statistics
Matches: 117, Mismatches: 21, Indels: 17
0.75 0.14 0.11
Matches are distributed among these distances:
25 2 0.02
26 21 0.18
27 94 0.80
ACGTcount: A:0.40, C:0.18, G:0.20, T:0.21
Consensus pattern (27 bp):
AGGGTAAAATGACTAAAATACCCCGAT
Found at i:39712667 original size:54 final size:52
Alignment explanation
Indices: 39712568--39712736 Score: 146
Period size: 53 Copynumber: 3.2 Consensus size: 52
39712558 CATATGGACC
*
39712568 GAAATGCCCTT-AAAGGGTAAAATGACTAAAATACCCTCG-ATGGGTAAAATGACT
1 GAAATG-CCTTCATAGGGTAAAATGAC-AAAATACCC-CGTA-GGGTAAAATGACT
* * *
39712622 GAAATGCCTTCATAGGGTAAAATGATCGAAATACCACCGTAGGGTAGAAT-ACA
1 GAAATGCCTTCATAGGGTAAAATGA-CAAAATACC-CCGTAGGGTAAAATGACT
* * ** * *
39712675 AAAATACCCCCATAGGGTATAATGACCAAAATACCCCTGTAGAGTAAAATGACT
1 GAAATGCCTTCATAGGGTAAAATGA-CAAAATACCCC-GTAGGGTAAAATGACT
*
39712729 GTAATGCC
1 GAAATGCC
39712737 CCTGTAGGAT
Statistics
Matches: 92, Mismatches: 17, Indels: 12
0.76 0.14 0.10
Matches are distributed among these distances:
52 2 0.02
53 44 0.48
54 43 0.47
55 3 0.03
ACGTcount: A:0.40, C:0.19, G:0.20, T:0.21
Consensus pattern (52 bp):
GAAATGCCTTCATAGGGTAAAATGACAAAATACCCCGTAGGGTAAAATGACT
Found at i:39712711 original size:26 final size:26
Alignment explanation
Indices: 39712581--39712808 Score: 111
Period size: 27 Copynumber: 8.5 Consensus size: 26
39712571 ATGCCCTTAA
*
39712581 AGGGTAAAATGACTAAAATACCCTCGAT
1 AGGGTAAAATGACCAAAATACCC-C-AT
** * *
39712609 -GGGTAAAATGACTGAAATGCCTTCAT
1 AGGGTAAAATGACCAAAATACC-CCAT
* * *
39712635 AGGGTAAAATGATCGAAATACCACCGT
1 AGGGTAAAATGACCAAAATACC-CCAT
* *
39712662 AGGGTAGAAT-ACAAAAATACCCCCAT
1 AGGGTAAAATGACCAAAATA-CCCCAT
* *
39712688 AGGGTATAATGACCAAAATACCCCTGT
1 AGGGTAAAATGACCAAAATACCCC-AT
* *** * *
39712715 AGAGTAAAATGACTGTAATGCCCCTGT
1 AGGGTAAAATGACCAAAATACCCC-AT
* ** *
39712742 AGGATAAAATGACCGTAATACCCCTGT
1 AGGGTAAAATGACCAAAATACCCC-AT
* **
39712769 A-AGTAAAATGACCGTAATACCCCTAT
1 AGGGTAAAATGACCAAAATACCCC-AT
**
39712795 AGGAAAAAATGACC
1 AGGGTAAAATGACC
39712809 GTAATATCCT
Statistics
Matches: 161, Mismatches: 33, Indels: 13
0.78 0.16 0.06
Matches are distributed among these distances:
26 47 0.29
27 114 0.71
ACGTcount: A:0.40, C:0.20, G:0.19, T:0.21
Consensus pattern (26 bp):
AGGGTAAAATGACCAAAATACCCCAT
Found at i:39712759 original size:27 final size:27
Alignment explanation
Indices: 39712677--39712841 Score: 163
Period size: 27 Copynumber: 6.1 Consensus size: 27
39712667 AGAATACAAA
** * * **
39712677 AATACCCCCATAGGGTATAATGACCAA
1 AATACCCCTGTAGGATAAAATGACCGT
*
39712704 AATACCCCTGTA-GAGTAAAATGACTGT
1 AATACCCCTGTAGGA-TAAAATGACCGT
*
39712731 AATGCCCCTGTAGGATAAAATGACCGT
1 AATACCCCTGTAGGATAAAATGACCGT
*
39712758 AATACCCCTGTAAG-TAAAATGACCGT
1 AATACCCCTGTAGGATAAAATGACCGT
* *
39712784 AATACCCCTATAGGAAAAAATGACCGT
1 AATACCCCTGTAGGATAAAATGACCGT
* * * * *
39712811 AATATCCTTGTAGGTTAAATTGACTGT
1 AATACCCCTGTAGGATAAAATGACCGT
39712838 AATA
1 AATA
39712842 ACCTGGTGAG
Statistics
Matches: 114, Mismatches: 21, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
26 25 0.22
27 87 0.76
28 2 0.02
ACGTcount: A:0.38, C:0.20, G:0.17, T:0.25
Consensus pattern (27 bp):
AATACCCCTGTAGGATAAAATGACCGT
Found at i:39712792 original size:53 final size:53
Alignment explanation
Indices: 39712677--39712841 Score: 195
Period size: 53 Copynumber: 3.1 Consensus size: 53
39712667 AGAATACAAA
* * * **
39712677 AATACCCCCATAGGGTATAATGACCAAAATACCCCTGTAGAGTAAAATGACTGT
1 AATACCCCTATAGGATAAAATGACCGTAATACCCCTGTA-AGTAAAATGACTGT
* * *
39712731 AATGCCCCTGTAGGATAAAATGACCGTAATACCCCTGTAAGTAAAATGACCGT
1 AATACCCCTATAGGATAAAATGACCGTAATACCCCTGTAAGTAAAATGACTGT
* * * * *
39712784 AATACCCCTATAGGAAAAAATGACCGTAATATCCTTGTAGGTTAAATTGACTGT
1 AATACCCCTATAGGATAAAATGACCGTAATACCCCTGTAAG-TAAAATGACTGT
39712838 AATA
1 AATA
39712842 ACCTGGTGAG
Statistics
Matches: 94, Mismatches: 16, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
53 48 0.51
54 46 0.49
ACGTcount: A:0.38, C:0.20, G:0.17, T:0.25
Consensus pattern (53 bp):
AATACCCCTATAGGATAAAATGACCGTAATACCCCTGTAAGTAAAATGACTGT
Found at i:39712930 original size:24 final size:24
Alignment explanation
Indices: 39712901--39712960 Score: 77
Period size: 24 Copynumber: 2.5 Consensus size: 24
39712891 TATGTTGTTA
39712901 AATGACTGATTCGTCTGTG-TTTGG
1 AATGACTGATTCGTCTGTGATTT-G
* * *
39712925 TATGACTGGTTTGTCTGTGATTTG
1 AATGACTGATTCGTCTGTGATTTG
39712949 AATGACTGATTC
1 AATGACTGATTC
39712961 TAAGCATGGC
Statistics
Matches: 29, Mismatches: 6, Indels: 2
0.78 0.16 0.05
Matches are distributed among these distances:
24 26 0.90
25 3 0.10
ACGTcount: A:0.18, C:0.12, G:0.27, T:0.43
Consensus pattern (24 bp):
AATGACTGATTCGTCTGTGATTTG
Found at i:39713071 original size:27 final size:25
Alignment explanation
Indices: 39713028--39713082 Score: 76
Period size: 27 Copynumber: 2.1 Consensus size: 25
39713018 GGAAGTACTG
39713028 TACTGGTGGCTCTGCCACAATCACTAT
1 TACTGGTGGCTCTGCCAC-AT-ACTAT
39713055 TACTGGTGGCT-TGGCCACATACTAT
1 TACTGGTGGCTCT-GCCACATACTAT
39713080 TAC
1 TAC
39713083 CAGCAGCTTT
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
25 8 0.30
26 3 0.11
27 16 0.59
ACGTcount: A:0.22, C:0.27, G:0.20, T:0.31
Consensus pattern (25 bp):
TACTGGTGGCTCTGCCACATACTAT
Found at i:39713196 original size:32 final size:32
Alignment explanation
Indices: 39713129--39713337 Score: 185
Period size: 32 Copynumber: 6.5 Consensus size: 32
39713119 GCTGCGATGC
* * *
39713129 TACTGATGGCTTTGTG-TCAGCCATAGTACCGT
1 TACTGATGGCTTTGTGCTGA-TCATATTACCGT
*
39713161 TACTGATGGCTTTGTGCTGATCATATTACCAT
1 TACTGATGGCTTTGTGCTGATCATATTACCGT
**
39713193 TACTGATGG-TTGTGTGCTGATCAT-TTCATTGT
1 TACTGATGGCTT-TGTGCTGATCATATT-ACCGT
* * *
39713225 TACTGATGG-TTGTGTGCCT-ATCATATCACTGC
1 TACTGATGGCTT-TGTG-CTGATCATATTACCGT
* *
39713257 TACTGATGGCTTTGTTCTGATCATGTTACCGT
1 TACTGATGGCTTTGTGCTGATCATATTACCGT
* ** * * *
39713289 TACTGATGGCTGTGTGCTGGCCATATCACTGC
1 TACTGATGGCTTTGTGCTGATCATATTACCGT
39713321 TACTGATGGCTTTGTGC
1 TACTGATGGCTTTGTGC
39713338 CAATCACATT
Statistics
Matches: 146, Mismatches: 24, Indels: 14
0.79 0.13 0.08
Matches are distributed among these distances:
31 6 0.04
32 133 0.91
33 7 0.05
ACGTcount: A:0.17, C:0.20, G:0.24, T:0.39
Consensus pattern (32 bp):
TACTGATGGCTTTGTGCTGATCATATTACCGT
Found at i:39713293 original size:96 final size:96
Alignment explanation
Indices: 39713126--39713343 Score: 269
Period size: 96 Copynumber: 2.3 Consensus size: 96
39713116 TTTGCTGCGA
* ** * *
39713126 TGCTACTGATGGCTTTGTGTCAGCCATAGT-ACCGTTACTGATGGCTTTGTGCTGATCATATTAC
1 TGCTACTGATGGCTTTGTGCCAATCATA-TCACTGCTACTGATGGCTTTGTGCTGATCATATTAC
* * * *
39713190 CATTACTGATGGTTGTGTGCTGATCATTTCAT
65 CATTACTGATGGCTGTGTGCTGACCATATCAC
* * * *
39713222 TGTTACTGATGG-TTGTGTGCCTATCATATCACTGCTACTGATGGCTTTGTTCTGATCATGTTAC
1 TGCTACTGATGGCTT-TGTGCCAATCATATCACTGCTACTGATGGCTTTGTGCTGATCATATTAC
* *
39713286 CGTTACTGATGGCTGTGTGCTGGCCATATCAC
65 CATTACTGATGGCTGTGTGCTGACCATATCAC
39713318 TGCTACTGATGGCTTTGTGCCAATCA
1 TGCTACTGATGGCTTTGTGCCAATCA
39713344 CATTAATGTA
Statistics
Matches: 102, Mismatches: 17, Indels: 6
0.82 0.14 0.05
Matches are distributed among these distances:
95 3 0.03
96 97 0.95
97 2 0.02
ACGTcount: A:0.18, C:0.20, G:0.23, T:0.39
Consensus pattern (96 bp):
TGCTACTGATGGCTTTGTGCCAATCATATCACTGCTACTGATGGCTTTGTGCTGATCATATTACC
ATTACTGATGGCTGTGTGCTGACCATATCAC
Found at i:39713390 original size:22 final size:22
Alignment explanation
Indices: 39713360--39713418 Score: 59
Period size: 22 Copynumber: 2.7 Consensus size: 22
39713350 TGTACTTATG
* *
39713360 GCTCGTAGCCATTCTGTTTATA
1 GCTCTTAGCCATTCTGTTTACA
*
39713382 GCT-TATAGCTA-TCTTGTTTACA
1 GCTCT-TAGCCATTC-TGTTTACA
39713404 GCTCTTAGCCATTCT
1 GCTCTTAGCCATTCT
39713419 AACTACTAGC
Statistics
Matches: 29, Mismatches: 4, Indels: 8
0.71 0.10 0.20
Matches are distributed among these distances:
21 2 0.07
22 24 0.83
23 3 0.10
ACGTcount: A:0.19, C:0.24, G:0.15, T:0.42
Consensus pattern (22 bp):
GCTCTTAGCCATTCTGTTTACA
Found at i:39716372 original size:14 final size:14
Alignment explanation
Indices: 39716353--39716401 Score: 71
Period size: 14 Copynumber: 3.5 Consensus size: 14
39716343 CTCCTTAAAA
39716353 GAAATTTTATCCTC
1 GAAATTTTATCCTC
*
39716367 GAAATTTTGTCCTC
1 GAAATTTTATCCTC
* *
39716381 AAAATTTCATCCTC
1 GAAATTTTATCCTC
39716395 GAAATTT
1 GAAATTT
39716402 ACCTGATACG
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
14 30 1.00
ACGTcount: A:0.31, C:0.20, G:0.08, T:0.41
Consensus pattern (14 bp):
GAAATTTTATCCTC
Found at i:39725761 original size:20 final size:21
Alignment explanation
Indices: 39725714--39725764 Score: 63
Period size: 20 Copynumber: 2.6 Consensus size: 21
39725704 GTATCATGAT
39725714 CTTTGCTT-CTTCTTTACTTA
1 CTTTGCTTACTTCTTTACTTA
* *
39725734 CTCT-CTTACTTGTTTACTTA
1 CTTTGCTTACTTCTTTACTTA
39725754 -TTTGCTTACTT
1 CTTTGCTTACTT
39725765 AAATAATTCA
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
19 5 0.19
20 21 0.81
ACGTcount: A:0.12, C:0.24, G:0.06, T:0.59
Consensus pattern (21 bp):
CTTTGCTTACTTCTTTACTTA
Found at i:39726094 original size:50 final size:50
Alignment explanation
Indices: 39725966--39726144 Score: 168
Period size: 50 Copynumber: 3.6 Consensus size: 50
39725956 GATAATAACA
* * * *
39725966 TGCCAAAGCCCTGTCCCAAACATGGTCTTACATGGGATGTT-TCCTATAC--
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGA-GTTCTCATAT-CGG
* * * *
39726015 TACCAATTCCATATCCCAGATATGGTCTTACATGGGAGTTCTCATATCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGAGTTCTCATATCGG
* ** *
39726065 TGCCCATGCCATGTCCCAGACATGGTCTTACGA-GGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTAC-ATGGGAGTTCTCATATCGG
* * *
39726115 TGCCAATGCCACGTCCAAGACATGTTCTTA
1 TGCCAATGCCATGTCCCAGACATGGTCTTA
39726145 TGTGGGACCT
Statistics
Matches: 106, Mismatches: 20, Indels: 7
0.80 0.15 0.05
Matches are distributed among these distances:
48 4 0.04
49 35 0.33
50 66 0.62
51 1 0.01
ACGTcount: A:0.23, C:0.29, G:0.20, T:0.28
Consensus pattern (50 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGAGTTCTCATATCGG
Found at i:39726152 original size:50 final size:50
Alignment explanation
Indices: 39726036--39726160 Score: 144
Period size: 50 Copynumber: 2.5 Consensus size: 50
39726026 TATCCCAGAT
** * * *
39726036 ATGGTCTTAC-ATGGGAGTTCTCATATCGGTGCCCATGCCATGTCCCAGAC
1 ATGGTCTTACGA-GGGACCTCTCATATCGGTGCCAATGCCACGTCCAAGAC
*
39726086 ATGGTCTTACGAGGGACCTCTCATCTCGGTGCCAATGCCACGTCCAAGAC
1 ATGGTCTTACGAGGGACCTCTCATATCGGTGCCAATGCCACGTCCAAGAC
* * * *
39726136 ATGTTCTTATGTGGGACCTTTCATA
1 ATGGTCTTACGAGGGACCTCTCATA
39726161 ACCTCAATAA
Statistics
Matches: 63, Mismatches: 11, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
50 62 0.98
51 1 0.02
ACGTcount: A:0.21, C:0.27, G:0.23, T:0.29
Consensus pattern (50 bp):
ATGGTCTTACGAGGGACCTCTCATATCGGTGCCAATGCCACGTCCAAGAC
Found at i:39728580 original size:12 final size:12
Alignment explanation
Indices: 39728555--39728593 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
39728545 ACTCGCTTCT
* *
39728555 TTACTTACTCAC
1 TTACTTGCTTAC
*
39728567 TTACTTGTTTAC
1 TTACTTGCTTAC
39728579 TTACTTGCTTAC
1 TTACTTGCTTAC
39728591 TTA
1 TTA
39728594 AATAACTCAT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.21, C:0.23, G:0.05, T:0.51
Consensus pattern (12 bp):
TTACTTGCTTAC
Found at i:39728841 original size:23 final size:23
Alignment explanation
Indices: 39728815--39728860 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
39728805 GTCCCAGACA
39728815 TAGTCTTACATGGGATGTTTTCT
1 TAGTCTTACATGGGATGTTTTCT
39728838 TAGTCTTACATGGGATGTTTTCT
1 TAGTCTTACATGGGATGTTTTCT
39728861 GTAATGCCAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.17, C:0.13, G:0.22, T:0.48
Consensus pattern (23 bp):
TAGTCTTACATGGGATGTTTTCT
Found at i:39728986 original size:50 final size:52
Alignment explanation
Indices: 39728864--39729052 Score: 170
Period size: 50 Copynumber: 3.6 Consensus size: 52
39728854 GTTTTCTGTA
* * * * * ** * *
39728864 ATGCCAATGTCATATCCCAGATATTGTCTTACATGGGAGTTCT-TATATCAG
1 ATGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCAATCTCAG
* * * *
39728915 -TGCCTATGCCAGGTCCTAGACATGGTCTTACGGGGGACCTCTC-ATCTC-G
1 ATGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCAATCTCAG
*
39728964 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATAATCTCAATG
1 ATGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTC--AATCTC-A-G
* *
39729020 ATGCCAATGCCATGTTCCAGACAAGGTCTTACA
1 ATGCCAATGCCATGTCCCAGACATGGTCTTACA
39729053 TAGGATCTCT
Statistics
Matches: 111, Mismatches: 19, Indels: 11
0.79 0.13 0.08
Matches are distributed among these distances:
49 1 0.01
50 73 0.66
53 5 0.05
56 32 0.29
ACGTcount: A:0.25, C:0.26, G:0.20, T:0.29
Consensus pattern (52 bp):
ATGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCAATCTCAG
Found at i:39736724 original size:20 final size:19
Alignment explanation
Indices: 39736699--39736736 Score: 58
Period size: 19 Copynumber: 1.9 Consensus size: 19
39736689 CAACTTGTGG
39736699 ACAAGCCACCAGTATTGCAA
1 ACAAG-CACCAGTATTGCAA
*
39736719 ACAAGCGCCAGTATTGCA
1 ACAAGCACCAGTATTGCA
39736737 GATAAACTGT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 12 0.71
20 5 0.29
ACGTcount: A:0.37, C:0.29, G:0.18, T:0.16
Consensus pattern (19 bp):
ACAAGCACCAGTATTGCAA
Found at i:39736782 original size:20 final size:20
Alignment explanation
Indices: 39736698--39736911 Score: 119
Period size: 20 Copynumber: 10.8 Consensus size: 20
39736688 CCAACTTGTG
*
39736698 GACAAGCCACCAGTATTGCA
1 GACAAGCTACCAGTATTGCA
* *
39736718 AACAAGC-GCCAGTATTGCA
1 GACAAGCTACCAGTATTGCA
* * ** * * **
39736737 GATAAACTGTCAATGTTGTT
1 GACAAGCTACCAGTATTGCA
*
39736757 GACAAGCCACCAGTATTGCA
1 GACAAGCTACCAGTATTGCA
* * **
39736777 GACAAGTTATCAGTATTGTG
1 GACAAGCTACCAGTATTGCA
* **
39736797 GACAAGCGACCAACATTGCA
1 GACAAGCTACCAGTATTGCA
* * **
39736817 AACAAGTTGTCAGTATTGCA
1 GACAAGCTACCAGTATTGCA
* *
39736837 GATAAACTACCAGTATTGTC-
1 GACAAGCTACCAGTATTG-CA
*
39736857 GACAAGAC-ACCAGTATTGTA
1 GACAAG-CTACCAGTATTGCA
** *
39736877 GACAAGCTGTCAGTATTGTA
1 GACAAGCTACCAGTATTGCA
*
39736897 GACAAACTACCAGTA
1 GACAAGCTACCAGTA
39736912 CTTCCTCCTT
Statistics
Matches: 137, Mismatches: 52, Indels: 10
0.69 0.26 0.05
Matches are distributed among these distances:
19 16 0.12
20 119 0.87
21 2 0.01
ACGTcount: A:0.36, C:0.21, G:0.20, T:0.23
Consensus pattern (20 bp):
GACAAGCTACCAGTATTGCA
Found at i:39736801 original size:40 final size:40
Alignment explanation
Indices: 39736708--39736901 Score: 131
Period size: 40 Copynumber: 4.9 Consensus size: 40
39736698 GACAAGCCAC
* * * * ** *
39736708 CAGTATTGCAAACAAGC-GCCAGTATTGCAGATAAACTGT
1 CAGTATTGTAGACAAGCTACCAGTATTGCAGACAAGTTAT
* * * *
39736747 CAATGTTGTTGACAAGCCACCAGTATTGCAGACAAGTTAT
1 CAGTATTGTAGACAAGCTACCAGTATTGCAGACAAGTTAT
* * ** * *
39736787 CAGTATTGTGGACAAGCGACCAACATTGCAAACAAGTTGT
1 CAGTATTGTAGACAAGCTACCAGTATTGCAGACAAGTTAT
* * * ** *
39736827 CAGTATTGCAGATAAACTACCAGTATTGTC-GACAAGACAC
1 CAGTATTGTAGACAAGCTACCAGTATTG-CAGACAAGTTAT
** *
39736867 CAGTATTGTAGACAAGCTGTCAGTATTGTAGACAA
1 CAGTATTGTAGACAAGCTACCAGTATTGCAGACAA
39736902 ACTACCAGTA
Statistics
Matches: 116, Mismatches: 36, Indels: 5
0.74 0.23 0.03
Matches are distributed among these distances:
39 12 0.10
40 103 0.89
41 1 0.01
ACGTcount: A:0.35, C:0.20, G:0.21, T:0.25
Consensus pattern (40 bp):
CAGTATTGTAGACAAGCTACCAGTATTGCAGACAAGTTAT
Found at i:39736832 original size:60 final size:60
Alignment explanation
Indices: 39736767--39736911 Score: 175
Period size: 60 Copynumber: 2.4 Consensus size: 60
39736757 GACAAGCCAC
** * * *
39736767 CAGTATTGCAGACAAGTTATCAGTATTGTGGACAAG-CGACCAACATTGCAAACAAGTTGT
1 CAGTATTGCAGACAAACTACCAGTATTGTCGACAAGAC-ACCAACATTGCAAACAAGCTGT
* ** * *
39736827 CAGTATTGCAGATAAACTACCAGTATTGTCGACAAGACACCAGTATTGTAGACAAGCTGT
1 CAGTATTGCAGACAAACTACCAGTATTGTCGACAAGACACCAACATTGCAAACAAGCTGT
*
39736887 CAGTATTGTAGACAAACTACCAGTA
1 CAGTATTGCAGACAAACTACCAGTA
39736912 CTTCCTCCTT
Statistics
Matches: 72, Mismatches: 12, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
60 71 0.99
61 1 0.01
ACGTcount: A:0.36, C:0.19, G:0.20, T:0.25
Consensus pattern (60 bp):
CAGTATTGCAGACAAACTACCAGTATTGTCGACAAGACACCAACATTGCAAACAAGCTGT
Found at i:39738576 original size:34 final size:34
Alignment explanation
Indices: 39738528--39738596 Score: 120
Period size: 34 Copynumber: 2.0 Consensus size: 34
39738518 TAAATTAAAA
39738528 GATGAAATTAGATGAATTAGCTCATCTTCTTCAT
1 GATGAAATTAGATGAATTAGCTCATCTTCTTCAT
* *
39738562 GATGAAATTGGATGAATTGGCTCATCTTCTTCAT
1 GATGAAATTAGATGAATTAGCTCATCTTCTTCAT
39738596 G
1 G
39738597 GAAAAGGTGA
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
34 33 1.00
ACGTcount: A:0.29, C:0.14, G:0.19, T:0.38
Consensus pattern (34 bp):
GATGAAATTAGATGAATTAGCTCATCTTCTTCAT
Found at i:39746863 original size:21 final size:20
Alignment explanation
Indices: 39746806--39746864 Score: 66
Period size: 21 Copynumber: 3.0 Consensus size: 20
39746796 GAGTACATCA
39746806 TAAACAGAAGCCCG-AAGGC
1 TAAACAGAAGCCCGTAAGGC
* * *
39746825 TACACAGAAGCACATAAGTGC
1 TAAACAGAAGCCCGTAAG-GC
*
39746846 TAAACAGGAGCCCGTAAGG
1 TAAACAGAAGCCCGTAAGG
39746865 GTTGAACGGA
Statistics
Matches: 31, Mismatches: 7, Indels: 3
0.76 0.17 0.07
Matches are distributed among these distances:
19 11 0.35
20 4 0.13
21 16 0.52
ACGTcount: A:0.41, C:0.24, G:0.25, T:0.10
Consensus pattern (20 bp):
TAAACAGAAGCCCGTAAGGC
Found at i:39746919 original size:42 final size:42
Alignment explanation
Indices: 39746860--39746971 Score: 118
Period size: 42 Copynumber: 2.7 Consensus size: 42
39746850 CAGGAGCCCG
* * * *
39746860 TAAGGGTTGAACGGAAGCTCA-TAGAAGCTGAACGGAAACCCA
1 TAAGGGTTAAACTGAAGCTCAGAAG-AGCTAAACGGAAACCCA
** **
39746902 TAAGGGTTAATTTGAAGCTCAGAAGAGCTAAATTGAAACCCA
1 TAAGGGTTAAACTGAAGCTCAGAAGAGCTAAACGGAAACCCA
* *
39746944 TTAGGGTTAAACTGAAGCTCAAAAGAGC
1 TAAGGGTTAAACTGAAGCTCAGAAGAGC
39746972 CGAATTGAAA
Statistics
Matches: 57, Mismatches: 12, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
42 55 0.96
43 2 0.04
ACGTcount: A:0.39, C:0.16, G:0.25, T:0.20
Consensus pattern (42 bp):
TAAGGGTTAAACTGAAGCTCAGAAGAGCTAAACGGAAACCCA
Found at i:39746937 original size:21 final size:21
Alignment explanation
Indices: 39746913--39747006 Score: 64
Period size: 21 Copynumber: 4.5 Consensus size: 21
39746903 AAGGGTTAAT
39746913 TTGAAGCTCAGAAGAGCTAAA
1 TTGAAGCTCAGAAGAGCTAAA
* * ** * *
39746934 TTGAAACCCATTAGGGTTAAA
1 TTGAAGCTCAGAAGAGCTAAA
* * **
39746955 CTGAAGCTCAAAAGAGCCGAA
1 TTGAAGCTCAGAAGAGCTAAA
*
39746976 TTGAAACTCAGAA-AGGCTAAA
1 TTGAAGCTCAGAAGA-GCTAAA
*
39746997 CTGAAGCTCA
1 TTGAAGCTCA
39747007 TGAGAGTAAA
Statistics
Matches: 50, Mismatches: 22, Indels: 2
0.68 0.30 0.03
Matches are distributed among these distances:
20 1 0.02
21 49 0.98
ACGTcount: A:0.41, C:0.18, G:0.21, T:0.19
Consensus pattern (21 bp):
TTGAAGCTCAGAAGAGCTAAA
Found at i:39746978 original size:42 final size:42
Alignment explanation
Indices: 39746894--39747006 Score: 136
Period size: 42 Copynumber: 2.7 Consensus size: 42
39746884 AAGCTGAACG
** * *
39746894 GAAACCCATAAGGGTTAATTTGAAGCTCAGAAGAGCTAAATT
1 GAAACCCATAAGGGTTAAACTGAAGCTCAAAAGAGCCAAATT
* *
39746936 GAAACCCATTAGGGTTAAACTGAAGCTCAAAAGAGCCGAATT
1 GAAACCCATAAGGGTTAAACTGAAGCTCAAAAGAGCCAAATT
* * * *
39746978 GAAACTCAGAAAGGCTAAACTGAAGCTCA
1 GAAACCCATAAGGGTTAAACTGAAGCTCA
39747007 TGAGAGTAAA
Statistics
Matches: 60, Mismatches: 11, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
42 60 1.00
ACGTcount: A:0.42, C:0.18, G:0.21, T:0.19
Consensus pattern (42 bp):
GAAACCCATAAGGGTTAAACTGAAGCTCAAAAGAGCCAAATT
Found at i:39753957 original size:29 final size:28
Alignment explanation
Indices: 39753900--39753958 Score: 75
Period size: 29 Copynumber: 2.1 Consensus size: 28
39753890 ATGCTCTTTC
*
39753900 CTTTAGCGGCATTTTTAAAGAAGCTCCG
1 CTTTAGCGGCATTTTTAAAGAAGCGCCG
*
39753928 CTTTAGCGGCGTTTTTTGAAA-AAGCGCCG
1 CTTTAGCGGC-ATTTTT-AAAGAAGCGCCG
39753957 CT
1 CT
39753959 AATAATAATA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
28 10 0.37
29 14 0.52
30 3 0.11
ACGTcount: A:0.22, C:0.22, G:0.24, T:0.32
Consensus pattern (28 bp):
CTTTAGCGGCATTTTTAAAGAAGCGCCG
Found at i:39754463 original size:7 final size:7
Alignment explanation
Indices: 39754453--39754486 Score: 50
Period size: 7 Copynumber: 4.9 Consensus size: 7
39754443 TAAGGTTTAT
39754453 GGGTTAG
1 GGGTTAG
39754460 GGGTTAG
1 GGGTTAG
39754467 GGGTTAG
1 GGGTTAG
*
39754474 AGGTTAG
1 GGGTTAG
*
39754481 AGGTTA
1 GGGTTA
39754487 AGATCAGTTA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
7 26 1.00
ACGTcount: A:0.21, C:0.00, G:0.50, T:0.29
Consensus pattern (7 bp):
GGGTTAG
Found at i:39754771 original size:110 final size:111
Alignment explanation
Indices: 39754532--39754799 Score: 294
Period size: 110 Copynumber: 2.4 Consensus size: 111
39754522 GTCAGGTTAT
*
39754532 GGTTTAGATTAATTAGTGTGTTTTAATTTATATATTAAATAATATTTAGGGGTTAAAGATTCAGG
1 GGTTTAGATTAATTAGTGT-TTTTAATTTATATATTAAATAAGATTTAGGGGTTAAAGATTCA-G
* * *
39754597 GTCGAGTTAAGGTTTAGGGATTAGGGATTCAGGGTCAGGTTAGGGTTTA
64 ATC-AGTTAAGGTTTAGGGATTAGAGATTCAGGGTCAGGTTAGGCTTTA
* *** *
39754646 GGATTTAGATTAATTAGTGTTTTTAATTTATATATTAAATAAGGTTTAGGGGTTTGGGGTT-A-A
1 GG-TTTAGATTAATTAGTGTTTTTAATTTATATATTAAATAAGATTTAGGGGTTAAAGATTCAGA
* * *
39754709 T-AGTT-AGTGATTTAGGGTTTAGAGATTCGGGGTCGGGTTAGGCTTTAA
65 TCAGTTAAG-G-TTTAGGGATTAGAGATTCAGGGTCAGGTTAGGCTTT-A
* *
39754757 GGTTTACATTAATTAGCAT-TTTTTAATTTATATACTAAATAAG
1 GGTTTAGATTAATTAG--TGTTTTTAATTTATATATTAAATAAG
39754800 TTCTTATATA
Statistics
Matches: 134, Mismatches: 14, Indels: 15
0.82 0.09 0.09
Matches are distributed among these distances:
108 2 0.01
109 5 0.04
110 44 0.33
111 27 0.20
112 1 0.01
113 1 0.01
114 37 0.28
115 17 0.13
ACGTcount: A:0.29, C:0.04, G:0.25, T:0.42
Consensus pattern (111 bp):
GGTTTAGATTAATTAGTGTTTTTAATTTATATATTAAATAAGATTTAGGGGTTAAAGATTCAGAT
CAGTTAAGGTTTAGGGATTAGAGATTCAGGGTCAGGTTAGGCTTTA
Found at i:39755770 original size:16 final size:15
Alignment explanation
Indices: 39755749--39755781 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
39755739 CGCCATTTAT
*
39755749 AAAT-TTTCCCCCTG
1 AAATATTTCCCCCTA
39755763 AAATATTTCCCCCTA
1 AAATATTTCCCCCTA
39755778 AAAT
1 AAAT
39755782 CCCTAATTTC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 4 0.24
15 13 0.76
ACGTcount: A:0.33, C:0.30, G:0.03, T:0.33
Consensus pattern (15 bp):
AAATATTTCCCCCTA
Found at i:39759091 original size:21 final size:21
Alignment explanation
Indices: 39759076--39759130 Score: 110
Period size: 21 Copynumber: 2.6 Consensus size: 21
39759066 CAGATGCTAC
39759076 TGTAGTTACTCAAGATTGCCA
1 TGTAGTTACTCAAGATTGCCA
39759097 TGTAGTTACTCAAGATTGCCA
1 TGTAGTTACTCAAGATTGCCA
39759118 TGTAGTTACTCAA
1 TGTAGTTACTCAA
39759131 AGAAGGCAGA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 34 1.00
ACGTcount: A:0.29, C:0.18, G:0.18, T:0.35
Consensus pattern (21 bp):
TGTAGTTACTCAAGATTGCCA
Found at i:39759700 original size:43 final size:43
Alignment explanation
Indices: 39759637--39760010 Score: 563
Period size: 43 Copynumber: 8.7 Consensus size: 43
39759627 ATGGCAATTT
**
39759637 TAGCGGCGTTTGTGAAAAAAGCGCCGCTAAAGGTCCTGATCTA
1 TAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCCTGATCTA
*
39759680 TAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCCTGATTTA
1 TAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCCTGATCTA
* *
39759723 TAGCGGCGTTTGTGGGAAAAGCGCAGCTAAAAGTCCTGATCTA
1 TAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCCTGATCTA
39759766 TAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCCTGATCTA
1 TAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCCTGATCTA
* * *
39759809 TAGTGGCGTTTGTGGGAAAAGCGCAGCTAAAAGTCCTGATCTA
1 TAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCCTGATCTA
* *
39759852 TAGCGGCGCTTGTGGGAAAAGCGCCGTTAAAGGTCCTGATCTA
1 TAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCCTGATCTA
* *
39759895 TAGCGACGTTTGTGGG-AAAGCGCTGCTAAAGGTCCTGATCTA
1 TAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCCTGATCTA
* * *
39759937 TAGCGGCGTTTTTGGG-AAAGCGCAGCTAAAGGTCTTGATCTA
1 TAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCCTGATCTA
* ***
39759979 TAGTGGCGTTTGTAAAAAAAGCGCCGCTAAAG
1 TAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAG
39760011 TTAGCGACGT
Statistics
Matches: 300, Mismatches: 30, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
42 73 0.24
43 227 0.76
ACGTcount: A:0.26, C:0.19, G:0.31, T:0.25
Consensus pattern (43 bp):
TAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCCTGATCTA
Found at i:39760781 original size:23 final size:23
Alignment explanation
Indices: 39760733--39760781 Score: 64
Period size: 23 Copynumber: 2.1 Consensus size: 23
39760723 AAATTTAAAT
* *
39760733 TTCGAGTTAATCGAATCGAGTTA
1 TTCGAGTTAATCGAATCAAGTAA
39760756 TTCGAGTTAAGTCGAAT-AAGTAA
1 TTCGAGTTAA-TCGAATCAAGTAA
39760779 TTC
1 TTC
39760782 AATTTTTGAG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
23 17 0.74
24 6 0.26
ACGTcount: A:0.33, C:0.12, G:0.20, T:0.35
Consensus pattern (23 bp):
TTCGAGTTAATCGAATCAAGTAA
Found at i:39760941 original size:20 final size:18
Alignment explanation
Indices: 39760917--39760982 Score: 71
Period size: 19 Copynumber: 3.4 Consensus size: 18
39760907 TACAAAAGAC
39760917 ATTCAAAATAATTTTCAAA
1 ATTCAAAATAATTTT-AAA
39760936 AGTTCAAAATAAATTTTAAA
1 A-TTCAAAAT-AATTTTAAA
*
39760956 ATTTAAAAT-ATTTATAAAA
1 ATTCAAAATAATTT-T-AAA
39760975 ATTCAAAA
1 ATTCAAAA
39760983 ATTTCTATTT
Statistics
Matches: 41, Mismatches: 2, Indels: 8
0.80 0.04 0.16
Matches are distributed among these distances:
17 4 0.10
18 1 0.02
19 18 0.44
20 12 0.29
21 6 0.15
ACGTcount: A:0.56, C:0.06, G:0.02, T:0.36
Consensus pattern (18 bp):
ATTCAAAATAATTTTAAA
Found at i:39764494 original size:43 final size:43
Alignment explanation
Indices: 39764425--39764668 Score: 275
Period size: 43 Copynumber: 5.7 Consensus size: 43
39764415 ACGCTGAAAT
* *
39764425 AAACGCTGCTATAGATCA-TGACCTTTAGCGGCGCTTTTCCCAC
1 AAACGCCGCTATAGATCAGAGACCTTTAGCGGCGCTTTT-CCAC
* * * *
39764468 CAACGTCACTATAGATCAGA-ACCTTTATCGGCGCATTTTCCAC
1 AAACGCCGCTATAGATCAGAGACCTTTAGCGGCGC-TTTTCCAC
* *
39764511 AAACGCCGCTATAGATCAG-GACCTTTAGCGGCACTTTTGCAC
1 AAACGCCGCTATAGATCAGAGACCTTTAGCGGCGCTTTTCCAC
* *
39764553 AAACGCCGCTATAGATCA-AGACCTTTAGTGGCACTTTTTCCAC
1 AAACGCCGCTATAGATCAGAGACCTTTAGCGGCGC-TTTTCCAC
* * * *
39764596 AAAAGTCGCTATAGCTC-GAGACCTTTAGCGGGGCTTTTCCCAC
1 AAACGCCGCTATAGATCAGAGACCTTTAGCGGCGCTTTT-CCAC
*
39764639 AAACGCCGCTATAGCTC-GAGACCTTTAGCG
1 AAACGCCGCTATAGATCAGAGACCTTTAGCG
39764669 ATGCTTCTCG
Statistics
Matches: 172, Mismatches: 22, Indels: 14
0.83 0.11 0.07
Matches are distributed among these distances:
42 43 0.25
43 125 0.73
44 4 0.02
ACGTcount: A:0.26, C:0.29, G:0.19, T:0.26
Consensus pattern (43 bp):
AAACGCCGCTATAGATCAGAGACCTTTAGCGGCGCTTTTCCAC
Found at i:39764662 original size:128 final size:128
Alignment explanation
Indices: 39764425--39764668 Score: 332
Period size: 128 Copynumber: 1.9 Consensus size: 128
39764415 ACGCTGAAAT
* * * * *
39764425 AAACGCTGCTATAGATCATGACCTTTAGCGGCGCTTTTCCCACCAACGTCACTATAGATCAGAAC
1 AAACGCCGCTATAGATCAAGACCTTTAGCGGCACTTTTCCCACAAAAGTCACTATAGATCAGAAC
*
39764490 CTTTATCGGCGCATTTTCCACAAACGCCGCTATAGATCAGGACCTTTAGCGGCACTTTTGCAC
66 CTTTAGCGGCGCATTTTCCACAAACGCCGCTATAGATCAGGACCTTTAGCGGCACTTTTGCAC
* * * *
39764553 AAACGCCGCTATAGATCAAGACCTTTAGTGGCACTTTTTCCACAAAAGTCGCTATAGCTC-GAGA
1 AAACGCCGCTATAGATCAAGACCTTTAGCGGCACTTTTCCCACAAAAGTCACTATAGATCAGA-A
* *
39764617 CCTTTAGCGGGGC-TTTTCCCACAAACGCCGCTATAGCTC-GAGACCTTTAGCG
65 CCTTTAGCGGCGCATTTT-CCACAAACGCCGCTATAGATCAG-GACCTTTAGCG
39764669 ATGCTTCTCG
Statistics
Matches: 101, Mismatches: 12, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
127 7 0.07
128 94 0.93
ACGTcount: A:0.26, C:0.29, G:0.19, T:0.26
Consensus pattern (128 bp):
AAACGCCGCTATAGATCAAGACCTTTAGCGGCACTTTTCCCACAAAAGTCACTATAGATCAGAAC
CTTTAGCGGCGCATTTTCCACAAACGCCGCTATAGATCAGGACCTTTAGCGGCACTTTTGCAC
Found at i:39766842 original size:39 final size:39
Alignment explanation
Indices: 39766793--39766871 Score: 113
Period size: 39 Copynumber: 2.0 Consensus size: 39
39766783 GCACTGGCAA
* * *
39766793 TCATTGAATTTATACCAAAGGCCTATCCATCATAACATG
1 TCATAGAATTTATAACAAAGGCCCATCCATCATAACATG
* *
39766832 TCATAGAATTTATAACATAGGCCCATGCATCATAACATG
1 TCATAGAATTTATAACAAAGGCCCATCCATCATAACATG
39766871 T
1 T
39766872 TTGCATTTAG
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
39 35 1.00
ACGTcount: A:0.37, C:0.22, G:0.11, T:0.30
Consensus pattern (39 bp):
TCATAGAATTTATAACAAAGGCCCATCCATCATAACATG
Found at i:39768605 original size:202 final size:203
Alignment explanation
Indices: 39768259--39768662 Score: 783
Period size: 202 Copynumber: 2.0 Consensus size: 203
39768249 TGAACAAAAA
39768259 TCATTTTATTTTTGTATTTTAATTTTATTTCTTATAATTTGGTCCTCTCCAAAATAAATAATTAT
1 TCATTTTATTTTTGTATTTTAATTTTATTTCTTATAATTTGGTCCTCTCCAAAATAAATAATTAT
*
39768324 ACCTAAATATCCATATGAATCTATTACTTTTTTTGACTTATTTATTAATTCTATTTAAACTAATA
66 ACCTAAATATCCATATGAATCTATTACTTTTTTTAACTTATTTATTAATTCTATTTAAACTAATA
39768389 TTTAAATATATCAAATGGTTTAGATTAATT-TTTTTAAAATATAAAAGTATTAATTAATTGTATA
131 TTTAAATATATCAAATGGTTTAGATTAATTGTTTTTAAAATATAAAAGTATTAATTAATTGTATA
39768453 AAATTTTC
196 AAATTTTC
39768461 TCATTTTATTTTTGTATTTTAATTTTATTTCTTATAATTTGGTCCTCTCCAAAATAAATAATTAT
1 TCATTTTATTTTTGTATTTTAATTTTATTTCTTATAATTTGGTCCTCTCCAAAATAAATAATTAT
39768526 ACCTAAATATCCATATGAATCTATTACTTTTTTTAACTTATTTATTAATTCTATTTAAACTAATA
66 ACCTAAATATCCATATGAATCTATTACTTTTTTTAACTTATTTATTAATTCTATTTAAACTAATA
*
39768591 TTTAAATATATCAAATGGTTTAGATTAATTGTTTTTTAAATATAAAAGTATTAATTAATTGTATA
131 TTTAAATATATCAAATGGTTTAGATTAATTGTTTTTAAAATATAAAAGTATTAATTAATTGTATA
39768656 AAATTTT
196 AAATTTT
39768663 ACCATTTAAC
Statistics
Matches: 199, Mismatches: 2, Indels: 1
0.99 0.01 0.00
Matches are distributed among these distances:
202 159 0.80
203 40 0.20
ACGTcount: A:0.36, C:0.09, G:0.05, T:0.50
Consensus pattern (203 bp):
TCATTTTATTTTTGTATTTTAATTTTATTTCTTATAATTTGGTCCTCTCCAAAATAAATAATTAT
ACCTAAATATCCATATGAATCTATTACTTTTTTTAACTTATTTATTAATTCTATTTAAACTAATA
TTTAAATATATCAAATGGTTTAGATTAATTGTTTTTAAAATATAAAAGTATTAATTAATTGTATA
AAATTTTC
Found at i:39769008 original size:15 final size:14
Alignment explanation
Indices: 39768976--39769017 Score: 66
Period size: 14 Copynumber: 2.9 Consensus size: 14
39768966 AACCCTTAAA
39768976 CCATAATCCCTAAT
1 CCATAATCCCTAAT
39768990 CCATAATCCCTATAT
1 CCATAATCCCTA-AT
*
39769005 CCATACTCCCTAA
1 CCATAATCCCTAA
39769018 ACCTTAAAAT
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
14 13 0.50
15 13 0.50
ACGTcount: A:0.33, C:0.38, G:0.00, T:0.29
Consensus pattern (14 bp):
CCATAATCCCTAAT
Found at i:39769279 original size:21 final size:22
Alignment explanation
Indices: 39769231--39769316 Score: 70
Period size: 21 Copynumber: 4.0 Consensus size: 22
39769221 CCCCTAATGT
*
39769231 CTAACCCTTAAACCCCTAAA-CC
1 CTAACCCATAAA-CCCTAAATCC
* *
39769253 ATAACCCATAAACCTTAAATCC
1 CTAACCCATAAACCCTAAATCC
** *
39769275 C-AACCTTTAAACCGT-AATCC
1 CTAACCCATAAACCCTAAATCC
* *
39769295 CTAATCCATAATCCCTAAATCC
1 CTAACCCATAAACCCTAAATCC
39769317 ATACTCTCTA
Statistics
Matches: 49, Mismatches: 12, Indels: 6
0.73 0.18 0.09
Matches are distributed among these distances:
20 6 0.12
21 26 0.53
22 17 0.35
ACGTcount: A:0.38, C:0.37, G:0.01, T:0.23
Consensus pattern (22 bp):
CTAACCCATAAACCCTAAATCC
Found at i:39769328 original size:15 final size:15
Alignment explanation
Indices: 39769289--39769319 Score: 55
Period size: 14 Copynumber: 2.1 Consensus size: 15
39769279 CTTTAAACCG
39769289 TAATCCCT-AATCCA
1 TAATCCCTAAATCCA
39769303 TAATCCCTAAATCCA
1 TAATCCCTAAATCCA
39769318 TA
1 TA
39769320 CTCTCTAAAC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 8 0.50
15 8 0.50
ACGTcount: A:0.39, C:0.32, G:0.00, T:0.29
Consensus pattern (15 bp):
TAATCCCTAAATCCA
Found at i:39769338 original size:310 final size:305
Alignment explanation
Indices: 39768788--39769400 Score: 928
Period size: 310 Copynumber: 2.0 Consensus size: 305
39768778 CAATATATTT
39768788 AATTTATTATTATCTCTTTTACAATTATATAAGAACATATTTAAAATATAAATTAAAAAAATAAT
1 AATTTATTATTATCTCTTTTACAATTATATAAGAACATATTTAAAATATAAATTAAAAAAATAAT
* ** * * * *
39768853 TAATCTAAACCCAAAACCCTAACTTGACCCTTGAATCCCTAAACCCTAAATCCCCAACTCTTAAC
66 TAATCTAAACCAAAAACCCTAACCCGACCCCTAAATCCCTAAACCCTAAATCCACAACTATTAAC
*
39768918 CCCTAACATTCGAACCCTTAAACCCCTAACCCCTAAACCTTAAATCTCAACCCTTAAACCATAAT
131 CCCTAACATTCGAACCCTTAAACCCCTAACCCCTAAACCTTAAATCCCAACCCTTAAACCATAAT
* * *
39768983 CCCTAATCCATAATCCCTATATCCATACTCCCTAAACCTTAAAATA-TGAACTCCTAAACCGGTC
196 CCCTAATCCATAATCCCTAAATCCATACTCCCTAAACCTTAAAATAGT-AACTCCTAAACCAGCC
* *
39769047 TTAAATCTTAAATTAATCATATACCCTAAACTAAAAACCCTAAACA
260 TTAAATCTTAAATAAATCATATACCCTAAACCAAAAACCCTAAACA
39769093 AATTTATTATTATCTCTTTTACAATTATATAAGAACATATTTAAAATATAAATT-AAAAAATAAT
1 AATTTATTATTATCTCTTTTACAATTATATAAGAACATATTTAAAATATAAATTAAAAAAATAAT
* * *
39769157 TAATCTACACCAAAAACCCTAACCCGACCCCTAAATCCCTAAACCTTAAATCCATAACTATTAAC
66 TAATCTAAACCAAAAACCCTAACCCGACCCCTAAATCCCTAAACCCTAAATCCACAACTATTAAC
* *
39769222 CCCT-A-ATGTCTAACCCTTAAACCCCTAAACCATAACCCATAAACCTTAAATCCCAACCTTTAA
131 CCCTAACAT-TCGAACCCTTAAACCCCT-AA-C----CCC-TAAACCTTAAATCCCAACCCTTAA
* *
39769285 ACCGTAATCCCTAATCCATAATCCCTAAATCCATACTCTCTAAACCTTAAAATAGTAACTCCTAA
188 ACCATAATCCCTAATCCATAATCCCTAAATCCATACTCCCTAAACCTTAAAATAGTAACTCCTAA
*
39769350 ACCAGCCTTAAATCTTAAATAAATCATATACCCTAAACCAAAAATCCTAAA
253 ACCAGCCTTAAATCTTAAATAAATCATATACCCTAAACCAAAAACCCTAAA
39769401 TTATAGTGAT
Statistics
Matches: 278, Mismatches: 21, Indels: 13
0.89 0.07 0.04
Matches are distributed among these distances:
302 2 0.01
303 18 0.06
304 71 0.26
305 55 0.20
309 3 0.01
310 128 0.46
311 1 0.00
ACGTcount: A:0.42, C:0.27, G:0.02, T:0.28
Consensus pattern (305 bp):
AATTTATTATTATCTCTTTTACAATTATATAAGAACATATTTAAAATATAAATTAAAAAAATAAT
TAATCTAAACCAAAAACCCTAACCCGACCCCTAAATCCCTAAACCCTAAATCCACAACTATTAAC
CCCTAACATTCGAACCCTTAAACCCCTAACCCCTAAACCTTAAATCCCAACCCTTAAACCATAAT
CCCTAATCCATAATCCCTAAATCCATACTCCCTAAACCTTAAAATAGTAACTCCTAAACCAGCCT
TAAATCTTAAATAAATCATATACCCTAAACCAAAAACCCTAAACA
Found at i:39769839 original size:41 final size:40
Alignment explanation
Indices: 39769679--39769837 Score: 201
Period size: 41 Copynumber: 3.9 Consensus size: 40
39769669 AAAAATGTTT
* *
39769679 TTAGCGGCGCTTTTTTAAAAACGCCACTAAAGACCCCAGCA
1 TTAGCGGCGCTTTTTCAAAAACGCCGCTAAAG-CCCCAGCA
* *
39769720 TTAGCGGCGCTTTTCCAAAAACACCGCTAAAGGCCCCAGCA
1 TTAGCGGCGCTTTTTCAAAAACGCCGCTAAA-GCCCCAGCA
* * * *
39769761 TTAGTGGCGCTTTCTCAAAAACGCCGTTAAAACCCCGAGCA
1 TTAGCGGCGCTTTTTCAAAAACGCCGCTAAAGCCCC-AGCA
**
39769802 TTAGCGGCGCTTTTTTGAAAACGCCGCTAAAGCCCC
1 TTAGCGGCGCTTTTTCAAAAACGCCGCTAAAGCCCC
39769838 GAAAGGTAAC
Statistics
Matches: 100, Mismatches: 16, Indels: 4
0.83 0.13 0.03
Matches are distributed among these distances:
40 4 0.04
41 95 0.95
42 1 0.01
ACGTcount: A:0.28, C:0.31, G:0.19, T:0.21
Consensus pattern (40 bp):
TTAGCGGCGCTTTTTCAAAAACGCCGCTAAAGCCCCAGCA
Found at i:39770370 original size:70 final size:70
Alignment explanation
Indices: 39770292--39770430 Score: 242
Period size: 70 Copynumber: 2.0 Consensus size: 70
39770282 AGTTGGAATA
* * *
39770292 AAATAATAGATTGATCGGTTCCAAATATGAAAATTCTTCTAGATGGTCATATAGTGGAGGCGGGT
1 AAATAATAGATTGATCAGTTCAAAATATGAAAATTCTTCAAGATGGTCATATAGTGGAGGCGGGT
39770357 GCTCC
66 GCTCC
*
39770362 AAATAATAGATTGATTAGTTCAAAATATGAAAATTCTTCAAGATGGTCATATAGTGGAGGCGGGT
1 AAATAATAGATTGATCAGTTCAAAATATGAAAATTCTTCAAGATGGTCATATAGTGGAGGCGGGT
39770427 GCTC
66 GCTC
39770431 TAGAAGAGAC
Statistics
Matches: 65, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
70 65 1.00
ACGTcount: A:0.34, C:0.12, G:0.24, T:0.30
Consensus pattern (70 bp):
AAATAATAGATTGATCAGTTCAAAATATGAAAATTCTTCAAGATGGTCATATAGTGGAGGCGGGT
GCTCC
Found at i:39771792 original size:10 final size:10
Alignment explanation
Indices: 39771777--39771801 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
39771767 TTTGAAAATC
39771777 AATTTGATTT
1 AATTTGATTT
39771787 AATTTGATTT
1 AATTTGATTT
39771797 AATTT
1 AATTT
39771802 TTAACTAATT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.32, C:0.00, G:0.08, T:0.60
Consensus pattern (10 bp):
AATTTGATTT
Found at i:39774852 original size:18 final size:18
Alignment explanation
Indices: 39774831--39774866 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
39774821 TTAAGTAATG
39774831 GTTAGCTGTTAGCAGTTA
1 GTTAGCTGTTAGCAGTTA
* *
39774849 GTTAGTTGTTAGCGGTTA
1 GTTAGCTGTTAGCAGTTA
39774867 CTGACATTAG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.19, C:0.08, G:0.31, T:0.42
Consensus pattern (18 bp):
GTTAGCTGTTAGCAGTTA
Found at i:39776667 original size:9 final size:9
Alignment explanation
Indices: 39776653--39776690 Score: 67
Period size: 9 Copynumber: 4.2 Consensus size: 9
39776643 TCTCAGTTGA
39776653 GTTCAGTTT
1 GTTCAGTTT
39776662 GTTCAGTTT
1 GTTCAGTTT
39776671 GTTCAGTTT
1 GTTCAGTTT
*
39776680 GTTCAGCTT
1 GTTCAGTTT
39776689 GT
1 GT
39776691 CAGCTTGAAA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
9 28 1.00
ACGTcount: A:0.11, C:0.13, G:0.24, T:0.53
Consensus pattern (9 bp):
GTTCAGTTT
Found at i:39799411 original size:21 final size:21
Alignment explanation
Indices: 39799362--39799406 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
39799352 ACCATGTTGC
* *
39799362 AAACA-ATTCAAATTATTATT
1 AAACATATACAAATTATAATT
39799382 AAACATATACAAATTCATAATT
1 AAACATATACAAATT-ATAATT
39799404 AAA
1 AAA
39799407 GTATATAACA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 5 0.24
21 8 0.38
22 8 0.38
ACGTcount: A:0.56, C:0.11, G:0.00, T:0.33
Consensus pattern (21 bp):
AAACATATACAAATTATAATT
Found at i:39802757 original size:18 final size:18
Alignment explanation
Indices: 39802736--39802772 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
39802726 AGTTATTCTC
*
39802736 TTTCAAAACGTTATTAAT
1 TTTCAAAACGTTACTAAT
*
39802754 TTTCAAAATGTTACTAAT
1 TTTCAAAACGTTACTAAT
39802772 T
1 T
39802773 GCGAAAGCTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.38, C:0.11, G:0.05, T:0.46
Consensus pattern (18 bp):
TTTCAAAACGTTACTAAT
Found at i:39803082 original size:21 final size:21
Alignment explanation
Indices: 39803056--39803118 Score: 90
Period size: 21 Copynumber: 3.0 Consensus size: 21
39803046 TTGGTATTTG
39803056 GGAATTGGTACGAAATGGTAT
1 GGAATTGGTACGAAATGGTAT
*
39803077 GGAATTGGTATGAAATGGTAT
1 GGAATTGGTACGAAATGGTAT
* *
39803098 GGTATTTGGTACGAATTGGTA
1 GG-AATTGGTACGAAATGGTA
39803119 ATGGTTCAAA
Statistics
Matches: 37, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
21 22 0.59
22 15 0.41
ACGTcount: A:0.30, C:0.03, G:0.33, T:0.33
Consensus pattern (21 bp):
GGAATTGGTACGAAATGGTAT
Found at i:39813985 original size:20 final size:20
Alignment explanation
Indices: 39813947--39813985 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
39813937 TGGAGCAGGA
* *
39813947 ATATCGATATCGTAGGAAAT
1 ATATCGATACCGTAAGAAAT
*
39813967 ATATCGATACCTTAAGAAA
1 ATATCGATACCGTAAGAAA
39813986 AGAATCTATA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.44, C:0.13, G:0.15, T:0.28
Consensus pattern (20 bp):
ATATCGATACCGTAAGAAAT
Found at i:39817161 original size:18 final size:19
Alignment explanation
Indices: 39817125--39817175 Score: 52
Period size: 21 Copynumber: 2.6 Consensus size: 19
39817115 TATCAGAGGG
*
39817125 GTATCGATATCTTG-TAAAA
1 GTATCGATA-CTTGAAAAAA
39817144 -TATCGATACTTAGAAAAAAA
1 GTATCGATACTT-G-AAAAAA
39817164 GTATCGATACTT
1 GTATCGATACTT
39817176 TTTGTCCTGG
Statistics
Matches: 27, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
17 3 0.11
18 9 0.33
20 4 0.15
21 11 0.41
ACGTcount: A:0.41, C:0.12, G:0.14, T:0.33
Consensus pattern (19 bp):
GTATCGATACTTGAAAAAA
Found at i:39821547 original size:18 final size:18
Alignment explanation
Indices: 39821524--39821568 Score: 72
Period size: 18 Copynumber: 2.5 Consensus size: 18
39821514 TTGGGTTTGT
*
39821524 TTGGTTAGACGTTTGGTA
1 TTGGTTAGACGTTTAGTA
*
39821542 TTGGTTAGATGTTTAGTA
1 TTGGTTAGACGTTTAGTA
39821560 TTGGTTAGA
1 TTGGTTAGA
39821569 GGTGTTTAAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
18 25 1.00
ACGTcount: A:0.20, C:0.02, G:0.31, T:0.47
Consensus pattern (18 bp):
TTGGTTAGACGTTTAGTA
Found at i:39828488 original size:25 final size:25
Alignment explanation
Indices: 39828433--39828519 Score: 95
Period size: 25 Copynumber: 3.5 Consensus size: 25
39828423 ATGTATGCTT
* * *
39828433 ATACGAGCTATGAATCAGTATGCTC
1 ATACGAGCTGTGAATCAGGAAGCTC
*
39828458 -TCACGAGTTGTGAATCAGGAAGCTC
1 AT-ACGAGCTGTGAATCAGGAAGCTC
** *
39828483 ATACGAGCTGCAAATCAAGAAGCTC
1 ATACGAGCTGTGAATCAGGAAGCTC
39828508 ATACGAGCTGTG
1 ATACGAGCTGTG
39828520 GTGTGTCCGC
Statistics
Matches: 50, Mismatches: 10, Indels: 4
0.78 0.16 0.06
Matches are distributed among these distances:
24 1 0.02
25 48 0.96
26 1 0.02
ACGTcount: A:0.32, C:0.21, G:0.24, T:0.23
Consensus pattern (25 bp):
ATACGAGCTGTGAATCAGGAAGCTC
Found at i:39834247 original size:18 final size:19
Alignment explanation
Indices: 39834217--39834253 Score: 51
Period size: 18 Copynumber: 2.0 Consensus size: 19
39834207 GTATAAAAAA
39834217 TCTTTTTTATCTTT-CTTT
1 TCTTTTTTATCTTTACTTT
39834235 TCTTTCTTT-TCTTTACTTT
1 TCTTT-TTTATCTTTACTTT
39834254 AATTTCGTTC
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
18 10 0.59
19 7 0.41
ACGTcount: A:0.05, C:0.19, G:0.00, T:0.76
Consensus pattern (19 bp):
TCTTTTTTATCTTTACTTT
Found at i:39837855 original size:7 final size:7
Alignment explanation
Indices: 39837808--39837858 Score: 57
Period size: 7 Copynumber: 7.0 Consensus size: 7
39837798 CATTTTATTT
39837808 CTTTTTC
1 CTTTTTC
*
39837815 CATTTTC
1 CTTTTTC
*
39837822 CATTTTC
1 CTTTTTC
39837829 CTTTTTC
1 CTTTTTC
*
39837836 CTTTTCTTT
1 C-TTT-TTC
39837845 CTTTTTC
1 CTTTTTC
39837852 CTTTTTC
1 CTTTTTC
39837859 TTCTTTTTTT
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
7 29 0.76
8 6 0.16
9 3 0.08
ACGTcount: A:0.04, C:0.27, G:0.00, T:0.69
Consensus pattern (7 bp):
CTTTTTC
Found at i:39837867 original size:17 final size:16
Alignment explanation
Indices: 39837794--39837866 Score: 67
Period size: 16 Copynumber: 4.2 Consensus size: 16
39837784 TTCCTTCCTC
* *
39837794 TTTTCATTTTATTTCT
1 TTTTCCTTTTCTTTCT
39837810 TTTTCCATTTTCCATTTTCCT
1 TTTTCC-TTTT-C--TTT-CT
39837831 TTTTCCTTTTCTTTCT
1 TTTTCCTTTTCTTTCT
39837847 TTTTCCTTTT-TCTTCT
1 TTTTCCTTTTCT-TTCT
39837863 TTTT
1 TTTT
39837867 TTCATTTTTA
Statistics
Matches: 49, Mismatches: 2, Indels: 12
0.78 0.03 0.19
Matches are distributed among these distances:
15 1 0.02
16 25 0.51
17 7 0.14
19 1 0.02
20 7 0.14
21 8 0.16
ACGTcount: A:0.05, C:0.22, G:0.00, T:0.73
Consensus pattern (16 bp):
TTTTCCTTTTCTTTCT
Found at i:39837874 original size:17 final size:17
Alignment explanation
Indices: 39837794--39837874 Score: 65
Period size: 17 Copynumber: 4.6 Consensus size: 17
39837784 TTCCTTCCTC
*
39837794 TTTTCATTTTATTTCTT
1 TTTTCATTTTCTTTCTT
* *
39837811 TTTCCATTTTCCATTTTCCT
1 TTTTCATTTT-C--TTTCTT
*
39837831 TTTTCCTTTTCTTTCTT
1 TTTTCATTTTCTTTCTT
* *
39837848 TTTCCTTTTTC-TTCTTT
1 TTTTCATTTTCTTTC-TT
39837865 TTTTCATTTT
1 TTTTCATTTT
39837875 TATTTTTCTT
Statistics
Matches: 50, Mismatches: 10, Indels: 8
0.74 0.15 0.12
Matches are distributed among these distances:
16 3 0.06
17 33 0.66
19 1 0.02
20 13 0.26
ACGTcount: A:0.06, C:0.21, G:0.00, T:0.73
Consensus pattern (17 bp):
TTTTCATTTTCTTTCTT
Found at i:39837880 original size:24 final size:25
Alignment explanation
Indices: 39837842--39837900 Score: 77
Period size: 24 Copynumber: 2.4 Consensus size: 25
39837832 TTTCCTTTTC
*
39837842 TTTCTTTTTCCTTTTTCTTCT-TT-T
1 TTTCTTTTT-ATTTTTCTTCTCTTCT
39837866 TTTCATTTTTATTTTTCTTCTCTTCT
1 TTTC-TTTTTATTTTTCTTCTCTTCT
39837892 TTTCTTTTT
1 TTTCTTTTT
39837901 CCTCTTCGTT
Statistics
Matches: 31, Mismatches: 1, Indels: 5
0.84 0.03 0.14
Matches are distributed among these distances:
24 14 0.45
25 12 0.39
26 5 0.16
ACGTcount: A:0.03, C:0.19, G:0.00, T:0.78
Consensus pattern (25 bp):
TTTCTTTTTATTTTTCTTCTCTTCT
Found at i:39842318 original size:15 final size:15
Alignment explanation
Indices: 39842277--39842333 Score: 51
Period size: 15 Copynumber: 3.8 Consensus size: 15
39842267 ATCCTTTTAC
*
39842277 CAAAAATTAAAATCA
1 CAAAAATAAAAATCA
* * *
39842292 CTAAAGTGAAAATCA
1 CAAAAATAAAAATCA
**
39842307 CAAAAATAAAAAAAA
1 CAAAAATAAAAATCA
*
39842322 TAAAAATAAAAA
1 CAAAAATAAAAA
39842334 GCATGCGTAT
Statistics
Matches: 33, Mismatches: 9, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
15 33 1.00
ACGTcount: A:0.72, C:0.09, G:0.04, T:0.16
Consensus pattern (15 bp):
CAAAAATAAAAATCA
Found at i:39848704 original size:10 final size:11
Alignment explanation
Indices: 39848672--39848714 Score: 52
Period size: 11 Copynumber: 4.0 Consensus size: 11
39848662 TTTGGGTTTA
*
39848672 GGTTTTTATTT
1 GGTTTTGATTT
* *
39848683 TGTTTTGGTTT
1 GGTTTTGATTT
39848694 GGTTTT-ATTT
1 GGTTTTGATTT
39848704 GGTTTTGATTT
1 GGTTTTGATTT
39848715 CAGATTTGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
10 9 0.35
11 17 0.65
ACGTcount: A:0.07, C:0.00, G:0.23, T:0.70
Consensus pattern (11 bp):
GGTTTTGATTT
Found at i:39850344 original size:16 final size:16
Alignment explanation
Indices: 39850321--39850362 Score: 50
Period size: 17 Copynumber: 2.6 Consensus size: 16
39850311 AAATTTCAAC
39850321 TAATTTTTTTTAT-TA
1 TAATTTTTTTTATATA
*
39850336 TATATTTTTCCTTATATA
1 TA-ATTTTT-TTTATATA
39850354 TAATTTTTT
1 TAATTTTTT
39850363 ATATGTCAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 5
0.76 0.07 0.17
Matches are distributed among these distances:
15 2 0.09
16 6 0.27
17 10 0.45
18 4 0.18
ACGTcount: A:0.26, C:0.05, G:0.00, T:0.69
Consensus pattern (16 bp):
TAATTTTTTTTATATA
Found at i:39850426 original size:15 final size:16
Alignment explanation
Indices: 39850406--39850438 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
39850396 ATGGCTATGG
*
39850406 TAAAATCTAAT-ATTA
1 TAAAATCAAATAATTA
39850421 TAAAATCAAATAATTA
1 TAAAATCAAATAATTA
39850437 TA
1 TA
39850439 TCAAATATCA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 10 0.62
16 6 0.38
ACGTcount: A:0.58, C:0.06, G:0.00, T:0.36
Consensus pattern (16 bp):
TAAAATCAAATAATTA
Found at i:39850704 original size:9 final size:9
Alignment explanation
Indices: 39850686--39850730 Score: 56
Period size: 9 Copynumber: 5.1 Consensus size: 9
39850676 CGCCAAAAAA
39850686 ATAA-TTTT
1 ATAATTTTT
39850694 ATAATTTTT
1 ATAATTTTT
*
39850703 ATGATTTTT
1 ATAATTTTT
*
39850712 ACAATTTTT
1 ATAATTTTT
*
39850721 ACAATTTTT
1 ATAATTTTT
39850730 A
1 A
39850731 ATTAACAATT
Statistics
Matches: 33, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
8 4 0.12
9 29 0.88
ACGTcount: A:0.33, C:0.04, G:0.02, T:0.60
Consensus pattern (9 bp):
ATAATTTTT
Found at i:39851099 original size:10 final size:9
Alignment explanation
Indices: 39851085--39851109 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
39851075 AGTTTTTATG
39851085 ATTTTTACA
1 ATTTTTACA
39851094 ATTTTTACA
1 ATTTTTACA
39851103 ATTTTTA
1 ATTTTTA
39851110 ATTAACAATT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.32, C:0.08, G:0.00, T:0.60
Consensus pattern (9 bp):
ATTTTTACA
Found at i:39851397 original size:379 final size:379
Alignment explanation
Indices: 39850698--39851458 Score: 1387
Period size: 379 Copynumber: 2.0 Consensus size: 379
39850688 AATTTTATAA
39850698 TTTTTATGATTTTTACAATTTTTACAATTTTTAATTAACAATTTGATGCAAGACTCAAGGCCTAA
1 TTTTTATGATTTTTACAATTTTTACAATTTTTAATTAACAATTTGATGCAAGACTCAAGGCCTAA
*
39850763 ATTCAGGCCCACGGACTTGTTGGTCTTACTCTACCATAAGACCTAATTACGAGGTTGAAAGTGAA
66 ATTCAGGCCAACGGACTTGTTGGTCTTACTCTACCATAAGACCTAATTACGAGGTTGAAAGTGAA
39850828 GCAAATCAAGTCAAGACAAAACAAGACTATCCAAGACTTCGTGATGAAAGCCTTAGAAGCACATA
131 GCAAATCAAGTCAAGACAAAACAAGACTATCCAAGACTTCGTGATGAAAGCCTTAGAAGCACATA
39850893 AGAGGAAAAAAGAAAATCAAAATTTGAAATCTTGAAATTTTTAGTCCAAGAAACCAATTATTGAA
196 AGAGGAAAAAAGAAAATCAAAATTTGAAATCTTGAAATTTTTAGTCCAAGAAACCAATTATTGAA
* *
39850958 GTCTGTGCATGATGACCTATAGTAACGAGCTTGAACGAGCCCATTTCTAGAGCGACCATATCATA
261 GTCTGTGCATGATGACCTATAGTAACGAGCCTGAACAAGCCCATTTCTAGAGCGACCATATCATA
* *
39851023 AGTCCAAGTTTTTGAAAATTGAGTCATTGGGATGTCCAAAAGCCCAAAATAAAG
326 AGTCCAAGTTTTTGAAAATTGACTCATTAGGATGTCCAAAAGCCCAAAATAAAG
39851077 TTTTTATGATTTTTACAATTTTTACAATTTTTAATTAACAATTTGATGCAAGACTCAAGGCCTAA
1 TTTTTATGATTTTTACAATTTTTACAATTTTTAATTAACAATTTGATGCAAGACTCAAGGCCTAA
* * *
39851142 ATTCAGGCCAACGGATTTGTTGGTCTTACTCTACCGTAAGACCTAATTATGAGGTTGAAAGTGAA
66 ATTCAGGCCAACGGACTTGTTGGTCTTACTCTACCATAAGACCTAATTACGAGGTTGAAAGTGAA
* * *
39851207 GCAAATCAAGTCAAGATAGAACGAGACTATCCAAGACTTCGTGATGAAAGCCTTAGAAGCACATA
131 GCAAATCAAGTCAAGACAAAACAAGACTATCCAAGACTTCGTGATGAAAGCCTTAGAAGCACATA
*
39851272 AGAGGAAAAAAGAAAATCAAATTTTGAAATCTTGAAATTTTTAGTCCAAGAAACCAATTATTGAA
196 AGAGGAAAAAAGAAAATCAAAATTTGAAATCTTGAAATTTTTAGTCCAAGAAACCAATTATTGAA
* * *
39851337 GTCTGTGCATGATGACTTTTAGTAACGAGCCTGAACAAGTCCATTTCTAGAGCGACCATATCATA
261 GTCTGTGCATGATGACCTATAGTAACGAGCCTGAACAAGCCCATTTCTAGAGCGACCATATCATA
39851402 AGTCCAAGTTTTTGAAAATTGACTCATTAGGATGTCCAAAAGCCCAAAATAAAG
326 AGTCCAAGTTTTTGAAAATTGACTCATTAGGATGTCCAAAAGCCCAAAATAAAG
39851456 TTT
1 TTT
39851459 GGAGAAGAAC
Statistics
Matches: 367, Mismatches: 15, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
379 367 1.00
ACGTcount: A:0.37, C:0.17, G:0.17, T:0.29
Consensus pattern (379 bp):
TTTTTATGATTTTTACAATTTTTACAATTTTTAATTAACAATTTGATGCAAGACTCAAGGCCTAA
ATTCAGGCCAACGGACTTGTTGGTCTTACTCTACCATAAGACCTAATTACGAGGTTGAAAGTGAA
GCAAATCAAGTCAAGACAAAACAAGACTATCCAAGACTTCGTGATGAAAGCCTTAGAAGCACATA
AGAGGAAAAAAGAAAATCAAAATTTGAAATCTTGAAATTTTTAGTCCAAGAAACCAATTATTGAA
GTCTGTGCATGATGACCTATAGTAACGAGCCTGAACAAGCCCATTTCTAGAGCGACCATATCATA
AGTCCAAGTTTTTGAAAATTGACTCATTAGGATGTCCAAAAGCCCAAAATAAAG
Found at i:39854313 original size:13 final size:13
Alignment explanation
Indices: 39854295--39854327 Score: 57
Period size: 13 Copynumber: 2.5 Consensus size: 13
39854285 TAAAGGCTCG
39854295 CAAGTATAGTCTA
1 CAAGTATAGTCTA
*
39854308 CAAGTATCGTCTA
1 CAAGTATAGTCTA
39854321 CAAGTAT
1 CAAGTAT
39854328 GGTTGATGTC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.36, C:0.18, G:0.15, T:0.30
Consensus pattern (13 bp):
CAAGTATAGTCTA
Found at i:39854436 original size:39 final size:39
Alignment explanation
Indices: 39854382--39854461 Score: 133
Period size: 39 Copynumber: 2.1 Consensus size: 39
39854372 GTACTTATGA
* * *
39854382 ATTAATAGTATAGTTACGGTGAGCAACGATATCTTTCCC
1 ATTAATAGTATAGTTACAGTGAGCAAAGATATCGTTCCC
39854421 ATTAATAGTATAGTTACAGTGAGCAAAGATATCGTTCCC
1 ATTAATAGTATAGTTACAGTGAGCAAAGATATCGTTCCC
39854460 AT
1 AT
39854462 GAAGACTAAA
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
39 38 1.00
ACGTcount: A:0.34, C:0.16, G:0.17, T:0.33
Consensus pattern (39 bp):
ATTAATAGTATAGTTACAGTGAGCAAAGATATCGTTCCC
Found at i:39869645 original size:25 final size:25
Alignment explanation
Indices: 39869617--39869665 Score: 71
Period size: 25 Copynumber: 2.0 Consensus size: 25
39869607 AGTACAGTCT
** *
39869617 ATCTATAGTAGTTTCAGTATATACG
1 ATCTATAAAAGTTTCAGGATATACG
39869642 ATCTATAAAAGTTTCAGGATATAC
1 ATCTATAAAAGTTTCAGGATATAC
39869666 TATCAAAAAT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.37, C:0.12, G:0.14, T:0.37
Consensus pattern (25 bp):
ATCTATAAAAGTTTCAGGATATACG
Found at i:39869679 original size:25 final size:26
Alignment explanation
Indices: 39869625--39869679 Score: 69
Period size: 25 Copynumber: 2.2 Consensus size: 26
39869615 CTATCTATAG
* *
39869625 TAGTTTCAGTATATACGATCTATAAA
1 TAGTTTCAGGATATACGATCTAAAAA
*
39869651 -AGTTTCAGGATATACTATC-AAAAA
1 TAGTTTCAGGATATACGATCTAAAAA
39869675 TAGTT
1 TAGTT
39869680 CCAGAAAACT
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
24 4 0.16
25 21 0.84
ACGTcount: A:0.40, C:0.11, G:0.13, T:0.36
Consensus pattern (26 bp):
TAGTTTCAGGATATACGATCTAAAAA
Found at i:39872294 original size:20 final size:18
Alignment explanation
Indices: 39872213--39872287 Score: 64
Period size: 20 Copynumber: 4.0 Consensus size: 18
39872203 GATAGTATTT
*
39872213 TATTAATTTATTATTAAA
1 TATTAATTTAATATTAAA
39872231 GTGATT-ATCTTAATATTAAA
1 -T-ATTAAT-TTAATATTAAA
* *
39872251 T-TAAATTTAATAGATTTAA
1 TATTAATTTAAT--ATTAAA
39872270 TATTAATTTAATATTAAA
1 TATTAATTTAATATTAAA
39872288 GTGATTACGT
Statistics
Matches: 45, Mismatches: 5, Indels: 13
0.71 0.08 0.21
Matches are distributed among these distances:
17 6 0.13
18 7 0.16
19 10 0.22
20 22 0.49
ACGTcount: A:0.45, C:0.01, G:0.04, T:0.49
Consensus pattern (18 bp):
TATTAATTTAATATTAAA
Found at i:39872737 original size:6 final size:6
Alignment explanation
Indices: 39872726--39872782 Score: 96
Period size: 6 Copynumber: 9.2 Consensus size: 6
39872716 ATTTTTTAGG
39872726 TCATTT TCATTT TCATTT TCATTT TCATTT TCCATTT TCCATTT TCATTT
1 TCATTT TCATTT TCATTT TCATTT TCATTT T-CATTT T-CATTT TCATTT
39872776 TCATTT T
1 TCATTT T
39872783 GGAGAAAACC
Statistics
Matches: 50, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
6 37 0.74
7 13 0.26
ACGTcount: A:0.16, C:0.19, G:0.00, T:0.65
Consensus pattern (6 bp):
TCATTT
Found at i:39874905 original size:23 final size:23
Alignment explanation
Indices: 39874879--39874922 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
39874869 TAATTTTACT
39874879 ATTTTTTAAAAAATTAATTGACA
1 ATTTTTTAAAAAATTAATTGACA
* * *
39874902 ATTTTTTCAATAATTAGTTGA
1 ATTTTTTAAAAAATTAATTGA
39874923 TTTTTATGAG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.41, C:0.05, G:0.07, T:0.48
Consensus pattern (23 bp):
ATTTTTTAAAAAATTAATTGACA
Found at i:39880269 original size:30 final size:28
Alignment explanation
Indices: 39880235--39880290 Score: 69
Period size: 30 Copynumber: 1.9 Consensus size: 28
39880225 GTGATTAAAT
39880235 AAAATCGACA-CAAGCAGAATTTAAAAGAAA
1 AAAATCGACAGCAAG-A-AA-TTAAAAGAAA
*
39880265 AAAATTGACAGCAAGAAATTAAAAGA
1 AAAATCGACAGCAAGAAATTAAAAGA
39880291 TAAGTCCTAA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
28 8 0.33
29 2 0.08
30 10 0.42
31 4 0.17
ACGTcount: A:0.61, C:0.11, G:0.14, T:0.14
Consensus pattern (28 bp):
AAAATCGACAGCAAGAAATTAAAAGAAA
Found at i:39882779 original size:30 final size:28
Alignment explanation
Indices: 39882745--39882800 Score: 69
Period size: 30 Copynumber: 1.9 Consensus size: 28
39882735 GTGATTAAAT
39882745 AAAATCGACA-CAAGCAGAATTTAAAAGAAA
1 AAAATCGACAGCAAG-A-AA-TTAAAAGAAA
*
39882775 AAAATTGACAGCAAGAAATTAAAAGA
1 AAAATCGACAGCAAGAAATTAAAAGA
39882801 TAAGTCCTAA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
28 8 0.33
29 2 0.08
30 10 0.42
31 4 0.17
ACGTcount: A:0.61, C:0.11, G:0.14, T:0.14
Consensus pattern (28 bp):
AAAATCGACAGCAAGAAATTAAAAGAAA
Found at i:39889257 original size:36 final size:34
Alignment explanation
Indices: 39889217--39889286 Score: 95
Period size: 34 Copynumber: 2.0 Consensus size: 34
39889207 GGGTTGAAAC
39889217 TTTTTCTTTACTTATCATATTTTTAGATTAGATTTT
1 TTTTTCTTTAC-T-TCATATTTTTAGATTAGATTTT
* * *
39889253 TTTTTCTTTTCTTCTTATTTTTAGATTAGGTTTT
1 TTTTTCTTTACTTCATATTTTTAGATTAGATTTT
39889287 CCCCTTTTTT
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
34 20 0.65
35 1 0.03
36 10 0.32
ACGTcount: A:0.17, C:0.09, G:0.07, T:0.67
Consensus pattern (34 bp):
TTTTTCTTTACTTCATATTTTTAGATTAGATTTT
Found at i:39897484 original size:12 final size:12
Alignment explanation
Indices: 39897446--39897485 Score: 62
Period size: 13 Copynumber: 3.2 Consensus size: 12
39897436 TAAAAATCAT
39897446 AAAATTTATAAA
1 AAAATTTATAAA
39897458 CAAAATTTATAAA
1 -AAAATTTATAAA
39897471 AAAATGTTATAAA
1 AAAAT-TTATAAA
39897484 AA
1 AA
39897486 TTTAAAAATT
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
12 5 0.19
13 21 0.81
ACGTcount: A:0.65, C:0.03, G:0.03, T:0.30
Consensus pattern (12 bp):
AAAATTTATAAA
Found at i:39897500 original size:7 final size:8
Alignment explanation
Indices: 39897480--39897504 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
39897470 AAAAATGTTA
39897480 TAAAAATT
1 TAAAAATT
39897488 TAAAAATT
1 TAAAAATT
39897496 TAAAAATT
1 TAAAAATT
39897504 T
1 T
39897505 TATTAAAAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (8 bp):
TAAAAATT
Found at i:39897622 original size:14 final size:13
Alignment explanation
Indices: 39897598--39897633 Score: 63
Period size: 14 Copynumber: 2.7 Consensus size: 13
39897588 CAATATTATT
39897598 ATTTTTAATTAAA
1 ATTTTTAATTAAA
39897611 ATTTTATAATTAAA
1 ATTTT-TAATTAAA
39897625 ATTTTTAAT
1 ATTTTTAAT
39897634 AAATTTTGTT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
13 9 0.41
14 13 0.59
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (13 bp):
ATTTTTAATTAAA
Found at i:39899538 original size:22 final size:23
Alignment explanation
Indices: 39899513--39899556 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 23
39899503 TTAGCGAATG
39899513 AAATATATAAATAT-AAATAAAC
1 AAATATATAAATATAAAATAAAC
* *
39899535 AAATATTTATATATAAAATAAA
1 AAATATATAAATATAAAATAAA
39899557 ATATAAATTA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 12 0.63
23 7 0.37
ACGTcount: A:0.66, C:0.02, G:0.00, T:0.32
Consensus pattern (23 bp):
AAATATATAAATATAAAATAAAC
Found at i:39901587 original size:10 final size:10
Alignment explanation
Indices: 39901572--39901597 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
39901562 TGTCTTGACC
39901572 TTTTTTTTCT
1 TTTTTTTTCT
39901582 TTTTTTTTCT
1 TTTTTTTTCT
39901592 TTTTTT
1 TTTTTT
39901598 GCATTTTCTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.00, C:0.08, G:0.00, T:0.92
Consensus pattern (10 bp):
TTTTTTTTCT
Found at i:39907829 original size:394 final size:393
Alignment explanation
Indices: 39907169--39908350 Score: 2039
Period size: 394 Copynumber: 3.0 Consensus size: 393
39907159 TGATTACGTG
* ** * *
39907169 TATATACATGAGTTAGTTTGGAAGTTGTGTCGGGTCCGGTAATGCCTCGTAACCCCGTTTCGGCG
1 TATATACATGCGTTAGTTCAGAAGTTGTGTCGGGTCCGGTAATGCCTCGTAACCCCATTTCGACG
* * * * *
39907234 ACGGATACGGGTTAAGGGTGTTACAGCTC-TTTTTT-TTTTTAGCGTACTATACTTAAAATCTCT
66 ACGAATACTGGTTAAGGGTGTTACAGGTCATTTTTTCCTTTGAGCGTACTATACTTAAAATCTCT
39907297 TCACTTTCTATATCTCTTCTTAAATCCTATCTTTACATAGTCCTTAACCATTTCATTTACCTTAT
131 TCACTTTCTATATCTCTTCTTAAATCCTATCTTTACATAGTCCTTAACCATTTCATTTACCTTAT
39907362 TAGCAGACTTAAAATCTTATTTCATACTTATTGATTTTACCACTACCTTCGGGCGAGGTAAACTA
196 TAGCAGACTTAAAATCTTATTTCATACTTATTGATTTTACCACTACCTTCGGGCGAGGTAAACTA
* * *
39907427 CACCCATTACTTAACGTAGAGTTAACCCAGATCTTCCTTACTTTAGGGTGCTATCTATATATAAA
261 CGCCCATTACTTAACGTAGAGTTAACCCAGATCTTCCTTACTTCAAGGTGCTATCTATATATAAA
*
39907492 TATAACACATATCCCGGATTCGTCACCTATTTTGGTGCACTCTAGCTTCACTATTATTTTCTTGT
326 TATAACACATATCCCGGATTCGTCACCTATTTTGGTGCACTCTAGCTTCACTGTTATTTTCTTGT
39907557 TAT
391 TAT
*
39907560 TATATACATGCGTTAGTTCAGAAGTTGTGTCGGGTCCGGTAATGCCTCGTAACCCCATTTCAACG
1 TATATACATGCGTTAGTTCAGAAGTTGTGTCGGGTCCGGTAATGCCTCGTAACCCCATTTCGACG
* *
39907625 ATGAATACTGGTTAAGGGTGTTACAGGTCAATTTTTTCCTTTGAGCATACTATACTTAAAATCTC
66 ACGAATACTGGTTAAGGGTGTTACAGGTC-ATTTTTTCCTTTGAGCGTACTATACTTAAAATCTC
39907690 TTCACTTTCTATATCTCTTCTTAAATCCTATCTTTACATAGTCCTTAACCATTTCATTTACCTTA
130 TTCACTTTCTATATCTCTTCTTAAATCCTATCTTTACATAGTCCTTAACCATTTCATTTACCTTA
39907755 TTAGCAGACTTAAAATCTTATTTCATACTTATTGATTTTACCACTACCTTCGGGCGAGGTAAACT
195 TTAGCAGACTTAAAATCTTATTTCATACTTATTGATTTTACCACTACCTTCGGGCGAGGTAAACT
* * *
39907820 ATGCCCATTACTTAACATAGAGTTAACCCAGATCTTCCTTACTTGAAGGTGCTATCTATATATAA
260 ACGCCCATTACTTAACGTAGAGTTAACCCAGATCTTCCTTACTTCAAGGTGCTATCTATATATAA
*
39907885 ATATAACACATATCCTGGATTCGTCACCTATTTTGGTGCACTCTAGCTTCACTGTTATTTTCTTG
325 ATATAACACATATCCCGGATTCGTCACCTATTTTGGTGCACTCTAGCTTCACTGTTATTTTCTTG
39907950 TTAT
390 TTAT
*
39907954 TATATACATGCGTTAGTTCAGAAGTTGTGTCAGGTCCGGTAATGCCTCGTAACCCCATTTCGACG
1 TATATACATGCGTTAGTTCAGAAGTTGTGTCGGGTCCGGTAATGCCTCGTAACCCCATTTCGACG
* * *
39908019 ACGAATA-TGGGTTAAGGGTGTTACAAGTTATTTTTTTCCTTTGAGCGTTCTATACTTAAAATCT
66 ACGAATACT-GGTTAAGGGTGTTACAGGTCA-TTTTTTCCTTTGAGCGTACTATACTTAAAATCT
39908083 CTTCACTTTCTATATCTCTTCTTAAATCCTATCTTTACATAGTCCTTAACCATTTCATTTACCTT
129 CTTCACTTTCTATATCTCTTCTTAAATCCTATCTTTACATAGTCCTTAACCATTTCATTTACCTT
39908148 ATTAGCAGACTTAAAATCTTATTTCATACTTATTGATTTTACCACTACCTTCGGGCGAGGTAAAC
194 ATTAGCAGACTTAAAATCTTATTTCATACTTATTGATTTTACCACTACCTTCGGGCGAGGTAAAC
39908213 TACGCCCATTACTTAACGTAGAGTTAACCCAGATCTTCCTTACTTCAAGGTGCTATCTATATATA
259 TACGCCCATTACTTAACGTAGAGTTAACCCAGATCTTCCTTACTTCAAGGTGCTATCTATATATA
* * * *
39908278 AATATAACACATATCTCGGATTCGTCACCTATTCTGGCT-CACTCTATCTTTACTGTTATTTTCT
324 AATATAACACATATCCCGGATTCGTCACCTATTTTGG-TGCACTCTAGCTTCACTGTTATTTTCT
39908342 TGTTAT
388 TGTTAT
39908348 TAT
1 TAT
39908351 GCGGGGTTCA
Statistics
Matches: 750, Mismatches: 35, Indels: 9
0.94 0.04 0.01
Matches are distributed among these distances:
391 84 0.11
393 8 0.01
394 657 0.88
395 1 0.00
ACGTcount: A:0.26, C:0.21, G:0.14, T:0.39
Consensus pattern (393 bp):
TATATACATGCGTTAGTTCAGAAGTTGTGTCGGGTCCGGTAATGCCTCGTAACCCCATTTCGACG
ACGAATACTGGTTAAGGGTGTTACAGGTCATTTTTTCCTTTGAGCGTACTATACTTAAAATCTCT
TCACTTTCTATATCTCTTCTTAAATCCTATCTTTACATAGTCCTTAACCATTTCATTTACCTTAT
TAGCAGACTTAAAATCTTATTTCATACTTATTGATTTTACCACTACCTTCGGGCGAGGTAAACTA
CGCCCATTACTTAACGTAGAGTTAACCCAGATCTTCCTTACTTCAAGGTGCTATCTATATATAAA
TATAACACATATCCCGGATTCGTCACCTATTTTGGTGCACTCTAGCTTCACTGTTATTTTCTTGT
TAT
Found at i:39909153 original size:53 final size:53
Alignment explanation
Indices: 39909003--39909179 Score: 281
Period size: 53 Copynumber: 3.4 Consensus size: 53
39908993 TCCTTAAATT
* * *
39909003 TTTCCATATGATGTCATAACCCACTAGTTACGGTCTTACATGATATGGTCTCC
1 TTTCCATATGATGACATAACCCACCAGTTACGGTCTTACATGATATGGTCTTC
39909056 TTTCCATATGAT-ATCAT--CCCACCAGTTACGGTCTTACATGATATGGTCTTC
1 TTTCCATATGATGA-CATAACCCACCAGTTACGGTCTTACATGATATGGTCTTC
39909107 TTTCCATATGATGACATAACCCACCAGTTACGGTCTTACATGATATGGTCTTC
1 TTTCCATATGATGACATAACCCACCAGTTACGGTCTTACATGATATGGTCTTC
*
39909160 TTTCCATAT-ATGTCATAACC
1 TTTCCATATGATGACATAACC
39909180 TACGTGTCGA
Statistics
Matches: 116, Mismatches: 4, Indels: 9
0.90 0.03 0.07
Matches are distributed among these distances:
51 47 0.41
52 11 0.09
53 58 0.50
ACGTcount: A:0.25, C:0.25, G:0.14, T:0.36
Consensus pattern (53 bp):
TTTCCATATGATGACATAACCCACCAGTTACGGTCTTACATGATATGGTCTTC
Found at i:39910129 original size:4 final size:4
Alignment explanation
Indices: 39910120--39910150 Score: 53
Period size: 4 Copynumber: 7.8 Consensus size: 4
39910110 AAAGACAAAG
*
39910120 AAAT AAAT AAAT AAAT ACAT AAAT AAAT AAA
1 AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAA
39910151 ATGGGAATTA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
4 25 1.00
ACGTcount: A:0.74, C:0.03, G:0.00, T:0.23
Consensus pattern (4 bp):
AAAT
Found at i:39911262 original size:15 final size:15
Alignment explanation
Indices: 39911242--39911273 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
39911232 TAGTTTCCTC
*
39911242 TGTTTGTTGTCTTCT
1 TGTTTGTTGGCTTCT
39911257 TGTTTGTTGGCTTCT
1 TGTTTGTTGGCTTCT
39911272 TG
1 TG
39911274 CAGGTGACAG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.00, C:0.12, G:0.25, T:0.62
Consensus pattern (15 bp):
TGTTTGTTGGCTTCT
Found at i:39911945 original size:133 final size:132
Alignment explanation
Indices: 39911786--39912035 Score: 302
Period size: 133 Copynumber: 1.9 Consensus size: 132
39911776 ATATCTTTAG
* * * * ** *
39911786 TCTGTTCCACTGTACCTTTAGGGAGATAAGACTTGTAATTTTAACCTACTCCACTGCAACTTCAG
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTAACCTTAACCTACTACACTGCAACTTCAG
* * * **
39911851 GGAGACAAGATCTGCAGTCTTCAGTCTACTCTACTGCATTTTCAGGGAGATAAAACTTGTAATTT
66 GGAAACAAGATCTGCAG-CTTCAATCTACTCCACTGCAACTTCAGGGAGATAAAACTTGTAATTT
39911916 CAA
130 CAA
* * * *
39911919 TCTGCTCCACTGCAACTTCAGGGAGATAAGGCTTGTAGCCTTAATCTATTACACTGCAACTTCAG
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTAACCTTAACCTACTACACTGCAACTTCAG
* * * * *
39911984 GGAAATAAGATTTGTAGCTTTAATCTATTCCACTGCAACTTCAGGGAGATAA
66 GGAAACAAGATCTGCAGCTTCAATCTACTCCACTGCAACTTCAGGGAGATAA
39912036 GATTTGCCAC
Statistics
Matches: 96, Mismatches: 21, Indels: 1
0.81 0.18 0.01
Matches are distributed among these distances:
132 29 0.30
133 67 0.70
ACGTcount: A:0.29, C:0.22, G:0.18, T:0.31
Consensus pattern (132 bp):
TCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTAACCTTAACCTACTACACTGCAACTTCAG
GGAAACAAGATCTGCAGCTTCAATCTACTCCACTGCAACTTCAGGGAGATAAAACTTGTAATTTC
AA
Found at i:39912038 original size:44 final size:44
Alignment explanation
Indices: 39911664--39912041 Score: 292
Period size: 44 Copynumber: 8.6 Consensus size: 44
39911654 TCCACTCTAT
* * * * * *
39911664 TGCAAATTCAGAGAGATATGACTTGTAGCTTCAATCCACTCCAC
1 TGCAACTTCAGGGAGATAAGATTTGTAGCTTTAATCTACTCCAC
* * * * * * * * *
39911708 TACAATTTTAAGGAGATGAGATTTGTGGTTTTAGTCTGCTCCAC
1 TGCAACTTCAGGGAGATAAGATTTGTAGCTTTAATCTACTCCAC
** * * **
39911752 TGC-ACAGCAGGGAGATAAGATTTGATATCTTTAGTCTGTTCCAC
1 TGCAACTTCAGGGAGATAAGATTTG-TAGCTTTAATCTACTCCAC
* * * * ** *
39911796 TGTACCTTTAGGGAGATAAGACTTGTAATTTTAACCTACTCCAC
1 TGCAACTTCAGGGAGATAAGATTTGTAGCTTTAATCTACTCCAC
* * * * * *
39911840 TGCAACTTCAGGGAGACAAGATCTGCAGTCTTCAGTCTACTCTAC
1 TGCAACTTCAGGGAGATAAGATTTGTAG-CTTTAATCTACTCCAC
** * * * *
39911885 TGCATTTTCAGGGAGATAAAACTTGTA-ATTTCAATCTGCTCCAC
1 TGCAACTTCAGGGAGATAAGATTTGTAGCTTT-AATCTACTCCAC
** * * *
39911929 TGCAACTTCAGGGAGATAAGGCTTGTAGCCTTAATCTATTACAC
1 TGCAACTTCAGGGAGATAAGATTTGTAGCTTTAATCTACTCCAC
* *
39911973 TGCAACTTCAGGGAAATAAGATTTGTAGCTTTAATCTATTCCAC
1 TGCAACTTCAGGGAGATAAGATTTGTAGCTTTAATCTACTCCAC
39912017 TGCAACTTCAGGGAGATAAGATTTG
1 TGCAACTTCAGGGAGATAAGATTTG
39912042 CCACGATGAC
Statistics
Matches: 252, Mismatches: 77, Indels: 10
0.74 0.23 0.03
Matches are distributed among these distances:
43 17 0.07
44 186 0.74
45 49 0.19
ACGTcount: A:0.29, C:0.20, G:0.19, T:0.32
Consensus pattern (44 bp):
TGCAACTTCAGGGAGATAAGATTTGTAGCTTTAATCTACTCCAC
Found at i:39918026 original size:28 final size:29
Alignment explanation
Indices: 39917957--39918032 Score: 82
Period size: 30 Copynumber: 2.6 Consensus size: 29
39917947 CGAGACTATA
**
39917957 TTGCTCACACAAGCTGACAATGATCAGGGT
1 TTGCTCACACAAGCTGACAATGAT-AGAAT
** * *
39917987 TTGCTCGTACAAGCTGACATTTAT-GAAT
1 TTGCTCACACAAGCTGACAATGATAGAAT
39918015 TTGCTCACACAAGCTGAC
1 TTGCTCACACAAGCTGAC
39918033 GTTGTATCGA
Statistics
Matches: 38, Mismatches: 8, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
28 18 0.47
30 20 0.53
ACGTcount: A:0.29, C:0.24, G:0.20, T:0.28
Consensus pattern (29 bp):
TTGCTCACACAAGCTGACAATGATAGAAT
Found at i:39920009 original size:41 final size:40
Alignment explanation
Indices: 39919964--39920065 Score: 141
Period size: 41 Copynumber: 2.5 Consensus size: 40
39919954 TGATTCAGTA
39919964 CACCGGCACTTAGCCTGCTAGACATATAGTCTGAAATATTT
1 CACCGGCA-TTAGCCTGCTAGACATATAGTCTGAAATATTT
* * *
39920005 CACCGGCATTAAGCCTGCTAGACATTTAGTCTGAAGTGTTT
1 CACCGGCATT-AGCCTGCTAGACATATAGTCTGAAATATTT
*
39920046 CACCGGCAATAAGCCTGCTA
1 CACCGGC-ATTAGCCTGCTA
39920066 AGCACTAAGC
Statistics
Matches: 55, Mismatches: 4, Indels: 4
0.87 0.06 0.06
Matches are distributed among these distances:
40 2 0.04
41 51 0.93
42 2 0.04
ACGTcount: A:0.27, C:0.25, G:0.20, T:0.27
Consensus pattern (40 bp):
CACCGGCATTAGCCTGCTAGACATATAGTCTGAAATATTT
Done.