Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr09 ID=Chr09-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 70713020
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 1142373 characters in sequence are not A, C, G, or T
File 123 of 226
Found at i:41574865 original size:99 final size:100
Alignment explanation
Indices: 41574728--41574942 Score: 272
Period size: 99 Copynumber: 2.1 Consensus size: 100
41574718 GATGGCCCTG
* * * * * *
41574728 CCATGGTCTTAAGTTCATAGTGCCGTAACCCAGCTATGGTCTTATCATTAGAATGCCATAGCCCA
1 CCATGGTCTTACGTTCATAGTGCCATAACACAGCTATGGTCTTATCATCAGAATGACATAACCCA
* * *
41574793 ACTATGGTCTT-ATATAAACACTGCCATGGTCCAA
66 ACTATGGCCTTAATATAAACACTACCATGATCCAA
** *
41574827 CCATGGTCTTACG-TCTATAGTGCCATAACACATTTATGGTCTTATCATCAGAATGATATAACCC
1 CCATGGTCTTACGTTC-ATAGTGCCATAACACAGCTATGGTCTTATCATCAGAATGACATAACCC
* *
41574891 AGCTATGGCCTTACATATATACACTACCATGATCCAA
65 AACTATGGCCTTA-ATATAAACACTACCATGATCCAA
41574928 CCATGGTCTTACGTT
1 CCATGGTCTTACGTT
41574943 TGAATAATTG
Statistics
Matches: 98, Mismatches: 14, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
98 2 0.02
99 62 0.63
101 33 0.34
102 1 0.01
ACGTcount: A:0.29, C:0.25, G:0.15, T:0.31
Consensus pattern (100 bp):
CCATGGTCTTACGTTCATAGTGCCATAACACAGCTATGGTCTTATCATCAGAATGACATAACCCA
ACTATGGCCTTAATATAAACACTACCATGATCCAA
Found at i:41578144 original size:76 final size:76
Alignment explanation
Indices: 41578013--41578270 Score: 264
Period size: 76 Copynumber: 3.4 Consensus size: 76
41578003 TAAAAAAGTT
* * * * *
41578013 TTGCCCCTAGTGCTAGTCGGATAAACCAACGATATCAAATGTGTGCTCAGCACTAGTCCAATAAA
1 TTGCGCCTAGCGCTAGTCGGATAAACCGACGATATCAAATGTGTGCCCAGTACTAGTCCAATAAA
**
41578078 CCGGCAATGAG
66 CCAACAATGAG
* * *** **
41578089 TTGTGCCTAGCGCTAGTCGGATAAACTGACGATATCAAATGTGTGCCCAGTACTAGTTGGATGTA
1 TTGCGCCTAGCGCTAGTCGGATAAACCGACGATATCAAATGTGTGCCCAGTACTAGTCCAATAAA
41578154 CCAACAATGAG
66 CCAACAATGAG
* * * * *** **
41578165 TTGCGCCTAGCGCTATTCGGGTAAACCGACGATATCAAATGTGTGCCTAGTGCTAGTTGGATGTA
1 TTGCGCCTAGCGCTAGTCGGATAAACCGACGATATCAAATGTGTGCCCAGTACTAGTCCAATAAA
41578230 CCAACAATGAG
66 CCAACAATGAG
* * * * *
41578241 TTGCACCCAACGCTAGTCAGATAAAGCGAC
1 TTGCGCCTAGCGCTAGTCGGATAAACCGAC
41578271 AAATACAGCA
Statistics
Matches: 155, Mismatches: 27, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
76 155 1.00
ACGTcount: A:0.29, C:0.23, G:0.24, T:0.24
Consensus pattern (76 bp):
TTGCGCCTAGCGCTAGTCGGATAAACCGACGATATCAAATGTGTGCCCAGTACTAGTCCAATAAA
CCAACAATGAG
Found at i:41578145 original size:40 final size:40
Alignment explanation
Indices: 41578025--41578211 Score: 120
Period size: 36 Copynumber: 4.9 Consensus size: 40
41578015 GCCCCTAGTG
* *
41578025 CTAGTCGGATAAACCAACGATATCAAATGTGTGCTCAGCA
1 CTAGTCGGATAAACCGACGATATCAAATGTGTGCCCAGCA
** * * * * *
41578065 CTAGTCCAATAAACCGGC-A-AT-GAGT-TGTGCCTAGCG
1 CTAGTCGGATAAACCGACGATATCAAATGTGTGCCCAGCA
* *
41578101 CTAGTCGGATAAACTGACGATATCAAATGTGTGCCCAGTA
1 CTAGTCGGATAAACCGACGATATCAAATGTGTGCCCAGCA
* ** * * * * * *
41578141 CTAGTTGGATGTACCAAC-A-AT-GAGT-TGCGCCTAGCG
1 CTAGTCGGATAAACCGACGATATCAAATGTGTGCCCAGCA
* *
41578177 CTATTCGGGTAAACCGACGATATCAAATGTGTGCC
1 CTAGTCGGATAAACCGACGATATCAAATGTGTGCC
41578212 TAGTGCTAGT
Statistics
Matches: 101, Mismatches: 38, Indels: 16
0.65 0.25 0.10
Matches are distributed among these distances:
36 41 0.41
37 6 0.06
38 8 0.08
39 6 0.06
40 40 0.40
ACGTcount: A:0.30, C:0.22, G:0.24, T:0.24
Consensus pattern (40 bp):
CTAGTCGGATAAACCGACGATATCAAATGTGTGCCCAGCA
Found at i:41583628 original size:39 final size:39
Alignment explanation
Indices: 41583542--41583635 Score: 125
Period size: 39 Copynumber: 2.4 Consensus size: 39
41583532 AGTAATGTGT
* *
41583542 ACTCAAGTGAATTATTACACAAGTAAAACTTTAAATAGC
1 ACTCAAATGAATTATTACACAAGTAAAACTTTAAATAAC
* * * *
41583581 ACTTAAATGAATTTTTACACAAGTAAAAGTTTAAATAAT
1 ACTCAAATGAATTATTACACAAGTAAAACTTTAAATAAC
*
41583620 GCTCAAATGAATTATT
1 ACTCAAATGAATTATT
41583636 CTACTATTGA
Statistics
Matches: 46, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
39 46 1.00
ACGTcount: A:0.46, C:0.12, G:0.10, T:0.33
Consensus pattern (39 bp):
ACTCAAATGAATTATTACACAAGTAAAACTTTAAATAAC
Found at i:41583798 original size:3 final size:3
Alignment explanation
Indices: 41583790--41583828 Score: 78
Period size: 3 Copynumber: 13.0 Consensus size: 3
41583780 ATTTGGTGGA
41583790 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
41583829 AAGAATTCAA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 36 1.00
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (3 bp):
TTC
Found at i:41587267 original size:35 final size:36
Alignment explanation
Indices: 41587203--41587280 Score: 104
Period size: 35 Copynumber: 2.1 Consensus size: 36
41587193 AAGCTTGGCG
* * *
41587203 ACACCATGAAAATGGTTATCTACAGGCTCTTCAGAGCA
1 ACACCATAAAAATGG-T-TCTACAGGCTCTACAAAGCA
41587241 ACACCATAAAAATGG-TCTACAGGCTCTACAAAGCA
1 ACACCATAAAAATGGTTCTACAGGCTCTACAAAGCA
41587276 ACACC
1 ACACC
41587281 TCAAAAGAGG
Statistics
Matches: 37, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
35 23 0.62
38 14 0.38
ACGTcount: A:0.38, C:0.27, G:0.15, T:0.19
Consensus pattern (36 bp):
ACACCATAAAAATGGTTCTACAGGCTCTACAAAGCA
Found at i:41595930 original size:51 final size:50
Alignment explanation
Indices: 41595786--41595932 Score: 206
Period size: 51 Copynumber: 2.9 Consensus size: 50
41595776 CTACATCTTT
* * *
41595786 TAAATTATGACATGCATTATGTGACTCTCATGTTAGTTAAGTATGCATCA
1 TAAATAATGACATGCATTATGTAACTCTCATGTTAGTTAAGTTTGCATCA
* * *
41595836 TAAATAATGATATGCATTATGTAACTCTTATGATTAGTTAAGTTTTCATCA
1 TAAATAATGACATGCATTATGTAACTCTCATG-TTAGTTAAGTTTGCATCA
41595887 TAAATAATGACATGCATTATGTAACTC-CACTGTTAGTTAAAGTTTG
1 TAAATAATGACATGCATTATGTAACTCTCA-TGTTAGTT-AAGTTTG
41595933 TATCTTTAAA
Statistics
Matches: 85, Mismatches: 9, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
50 35 0.41
51 50 0.59
ACGTcount: A:0.34, C:0.12, G:0.14, T:0.39
Consensus pattern (50 bp):
TAAATAATGACATGCATTATGTAACTCTCATGTTAGTTAAGTTTGCATCA
Found at i:41597555 original size:28 final size:28
Alignment explanation
Indices: 41597509--41597625 Score: 173
Period size: 28 Copynumber: 4.2 Consensus size: 28
41597499 CTATTCAGTA
* *
41597509 ACAGT-ACAGTGTAGGCCTTAGCCCAAT
1 ACAGTAACAATGTGGGCCTTAGCCCAAT
41597536 ACAGTAACAATGTGGGCCTTAGCCCAAT
1 ACAGTAACAATGTGGGCCTTAGCCCAAT
* * *
41597564 ACAGTAACCATGTGTGCCTTAGCCTAAT
1 ACAGTAACAATGTGGGCCTTAGCCCAAT
*
41597592 ACAGTAACAATGCGGGCCTTAGCCCAAT
1 ACAGTAACAATGTGGGCCTTAGCCCAAT
41597620 ACAGTA
1 ACAGTA
41597626 TCGGTATAGT
Statistics
Matches: 80, Mismatches: 9, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
27 5 0.06
28 75 0.94
ACGTcount: A:0.32, C:0.26, G:0.21, T:0.22
Consensus pattern (28 bp):
ACAGTAACAATGTGGGCCTTAGCCCAAT
Found at i:41597763 original size:26 final size:26
Alignment explanation
Indices: 41597733--41597833 Score: 148
Period size: 26 Copynumber: 3.9 Consensus size: 26
41597723 AACACACCAA
*
41597733 TATCGCAGCAAAGCTGCCAGCAATAG
1 TATCGCAGCAAAGCTGCCAGTAATAG
* *
41597759 TATCGTAGCGAAGCTGCCAGTAATAG
1 TATCGCAGCAAAGCTGCCAGTAATAG
** *
41597785 TATCATAGCAAAGCTGCCAGTAACAG
1 TATCGCAGCAAAGCTGCCAGTAATAG
41597811 TATCGCAGCAAAGCTGCCAGTAA
1 TATCGCAGCAAAGCTGCCAGTAA
41597834 CTATATACTT
Statistics
Matches: 67, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 67 1.00
ACGTcount: A:0.35, C:0.24, G:0.23, T:0.19
Consensus pattern (26 bp):
TATCGCAGCAAAGCTGCCAGTAATAG
Found at i:41597886 original size:39 final size:39
Alignment explanation
Indices: 41597835--41597915 Score: 162
Period size: 39 Copynumber: 2.1 Consensus size: 39
41597825 TGCCAGTAAC
41597835 TATATACTTCCTCCATAACAGTATCCCAACCCTATGCAG
1 TATATACTTCCTCCATAACAGTATCCCAACCCTATGCAG
41597874 TATATACTTCCTCCATAACAGTATCCCAACCCTATGCAG
1 TATATACTTCCTCCATAACAGTATCCCAACCCTATGCAG
41597913 TAT
1 TAT
41597916 GTCATGTCAT
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 42 1.00
ACGTcount: A:0.31, C:0.32, G:0.07, T:0.30
Consensus pattern (39 bp):
TATATACTTCCTCCATAACAGTATCCCAACCCTATGCAG
Found at i:41598062 original size:27 final size:26
Alignment explanation
Indices: 41598031--41598318 Score: 216
Period size: 27 Copynumber: 10.7 Consensus size: 26
41598021 TCATCTCTTA
*
41598031 GGGGTATAATAGTCATTTTACCCTATG
1 GGGGTAT-TTAGTCATTTTACCCTATG
* * *
41598058 AGGGTATTTCGATCATTTTACCCTACG
1 GGGGTATTTAG-TCATTTTACCCTATG
* * *
41598085 GGGATATTTCAGTAATTTTACCCTACG
1 GGGGTATTT-AGTCATTTTACCCTATG
* *
41598112 GGGGTATTTCGATCATTTTATCCTATG
1 GGGGTATTTAG-TCATTTTACCCTATG
*** **
41598139 GGGGTATCCCGGTCATTTTACCCTACA
1 GGGGTAT-TTAGTCATTTTACCCTATG
* *
41598166 GGGGTATCTCAGTTATTTTACCCTATG
1 GGGGTAT-TTAGTCATTTTACCCTATG
* **
41598193 GGGGTATTTCGGTCATTTTACCCTACA
1 GGGGTATTT-AGTCATTTTACCCTATG
* *
41598220 GGGGTATTTCGATCATTTTACCCTACG
1 GGGGTATTTAG-TCATTTTACCCTATG
* * **
41598247 GGGGTGTTTCAATCATTTTACCCTACA
1 GGGGTATTT-AGTCATTTTACCCTATG
* *
41598274 GGGGTATTTCGGTCATTTTACCCTACG
1 GGGGTATTT-AGTCATTTTACCCTATG
* *
41598301 AGGGTATTTCGGTCATTT
1 GGGGTATTT-AGTCATTT
41598319 ATCGACCTCA
Statistics
Matches: 214, Mismatches: 40, Indels: 14
0.80 0.15 0.05
Matches are distributed among these distances:
26 5 0.02
27 207 0.97
28 2 0.01
ACGTcount: A:0.20, C:0.20, G:0.22, T:0.38
Consensus pattern (26 bp):
GGGGTATTTAGTCATTTTACCCTATG
Found at i:41598127 original size:54 final size:54
Alignment explanation
Indices: 41598041--41598318 Score: 362
Period size: 54 Copynumber: 5.1 Consensus size: 54
41598031 GGGGTATAAT
* *
41598041 AGTCATTTTACCCTA-TGAGGGTATTTCGATCATTTTACCCTACGGGGATATTTC
1 AGTCATTTTACCCTACAG-GGGTATTTCGATCATTTTACCCTACGGGGGTATTTC
* * * * **
41598095 AGTAATTTTACCCTACGGGGGTATTTCGATCATTTTATCCTATGGGGGTATCCC
1 AGTCATTTTACCCTACAGGGGTATTTCGATCATTTTACCCTACGGGGGTATTTC
* * * *
41598149 GGTCATTTTACCCTACAGGGGTATCTC-AGTTATTTTACCCTATGGGGGTATTTC
1 AGTCATTTTACCCTACAGGGGTATTTCGA-TCATTTTACCCTACGGGGGTATTTC
* *
41598203 GGTCATTTTACCCTACAGGGGTATTTCGATCATTTTACCCTACGGGGGTGTTTC
1 AGTCATTTTACCCTACAGGGGTATTTCGATCATTTTACCCTACGGGGGTATTTC
* * *
41598257 AATCATTTTACCCTACAGGGGTATTTCGGTCATTTTACCCTACGAGGGTATTTC
1 AGTCATTTTACCCTACAGGGGTATTTCGATCATTTTACCCTACGGGGGTATTTC
*
41598311 GGTCATTT
1 AGTCATTT
41598319 ATCGACCTCA
Statistics
Matches: 195, Mismatches: 26, Indels: 6
0.86 0.11 0.03
Matches are distributed among these distances:
53 1 0.01
54 192 0.98
55 2 0.01
ACGTcount: A:0.20, C:0.21, G:0.21, T:0.38
Consensus pattern (54 bp):
AGTCATTTTACCCTACAGGGGTATTTCGATCATTTTACCCTACGGGGGTATTTC
Found at i:41598178 original size:81 final size:80
Alignment explanation
Indices: 41598042--41598318 Score: 367
Period size: 81 Copynumber: 3.4 Consensus size: 80
41598032 GGGTATAATA
*
41598042 GTCATTTTACCCTATGAGGGTATTTCGATCATTTTACCCTACGGGGATATTTCAGTAATTTTACC
1 GTCATTTTACCCTACGAGGGTATTTCGATCATTTTACCCTACGGGG-TATTTCAGTAATTTTACC
41598107 CTACGGGGGTATTTCG
65 CTACGGGGGTATTTCG
* * * * ** * * *
41598123 ATCATTTTATCCTATGGGGGTATCCCGGTCATTTTACCCTACAGGGGTATCTCAGTTATTTTACC
1 GTCATTTTACCCTACGAGGGTATTTCGATCATTTTACCCTAC-GGGGTATTTCAGTAATTTTACC
*
41598188 CTATGGGGGTATTTCG
65 CTACGGGGGTATTTCG
* * *
41598204 GTCATTTTACCCTAC-AGGGGTATTTCGATCATTTTACCCTACGGGGGTGTTTCAATCATTTTAC
1 GTCATTTTACCCTACGA-GGGTATTTCGATCATTTTACCCTAC-GGGGTATTTCAGTAATTTTAC
*
41598268 CCTACAGGGGTATTTCG
64 CCTACGGGGGTATTTCG
*
41598285 GTCATTTTACCCTACGAGGGTATTTCGGTCATTT
1 GTCATTTTACCCTACGAGGGTATTTCGATCATTT
41598319 ATCGACCTCA
Statistics
Matches: 169, Mismatches: 24, Indels: 6
0.85 0.12 0.03
Matches are distributed among these distances:
81 164 0.97
82 5 0.03
ACGTcount: A:0.19, C:0.21, G:0.21, T:0.38
Consensus pattern (80 bp):
GTCATTTTACCCTACGAGGGTATTTCGATCATTTTACCCTACGGGGTATTTCAGTAATTTTACCC
TACGGGGGTATTTCG
Found at i:41602714 original size:52 final size:49
Alignment explanation
Indices: 41602649--41602760 Score: 143
Period size: 52 Copynumber: 2.2 Consensus size: 49
41602639 AGCGATTATC
* * * *
41602649 TTAATATTAAATTTAATTTAATAATTATCTTGTATATAGATATTCTATTACT
1 TTAATATTAAATTTAATCTAATAATTATC-TGGATA-AG-TATTATATTAAT
* *
41602701 TTGATATTAAATTTAATCTAATATTTATCTGGATAAGTATTATATTAAT
1 TTAATATTAAATTTAATCTAATAATTATCTGGATAAGTATTATATTAAT
41602750 TTAATATTAAA
1 TTAATATTAAA
41602761 GTGATTAAGT
Statistics
Matches: 53, Mismatches: 7, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
49 20 0.38
50 2 0.04
51 5 0.09
52 26 0.49
ACGTcount: A:0.40, C:0.04, G:0.05, T:0.50
Consensus pattern (49 bp):
TTAATATTAAATTTAATCTAATAATTATCTGGATAAGTATTATATTAAT
Found at i:41606300 original size:23 final size:23
Alignment explanation
Indices: 41606265--41606310 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
41606255 TATTCATTAG
* *
41606265 AAATAATATACAAATCAATAAAA
1 AAATAATACACAAATCAACAAAA
*
41606288 AAATTATACACAAATCAACAAAA
1 AAATAATACACAAATCAACAAAA
41606311 TAAGAACAAG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.67, C:0.13, G:0.00, T:0.20
Consensus pattern (23 bp):
AAATAATACACAAATCAACAAAA
Found at i:41606557 original size:19 final size:19
Alignment explanation
Indices: 41606533--41606605 Score: 137
Period size: 19 Copynumber: 3.8 Consensus size: 19
41606523 AATCATATCT
41606533 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
*
41606552 TCTAAGATTACATATCATA
1 TCTAAGATTGCATATCATA
41606571 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
41606590 TCTAAGATTGCATATC
1 TCTAAGATTGCATATC
41606606 CTTGAAGATT
Statistics
Matches: 52, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 52 1.00
ACGTcount: A:0.37, C:0.16, G:0.10, T:0.37
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:41606582 original size:38 final size:39
Alignment explanation
Indices: 41606510--41606605 Score: 140
Period size: 38 Copynumber: 2.4 Consensus size: 39
41606500 AAATTAAATC
*
41606510 TCTAAGATTACAAAATCATATCTTCTAAGATTGCATATCATA
1 TCTAAGATTAC-ATATCATA--TTCTAAGATTGCATATCATA
41606552 TCTAAGATTACATATCATA-TCTAAGATTGCATATCATA
1 TCTAAGATTACATATCATATTCTAAGATTGCATATCATA
*
41606590 TCTAAGATTGCATATC
1 TCTAAGATTACATATC
41606606 CTTGAAGATT
Statistics
Matches: 52, Mismatches: 2, Indels: 4
0.90 0.03 0.07
Matches are distributed among these distances:
38 34 0.65
41 7 0.13
42 11 0.21
ACGTcount: A:0.39, C:0.17, G:0.08, T:0.36
Consensus pattern (39 bp):
TCTAAGATTACATATCATATTCTAAGATTGCATATCATA
Found at i:41606919 original size:45 final size:44
Alignment explanation
Indices: 41606866--41607209 Score: 197
Period size: 45 Copynumber: 7.8 Consensus size: 44
41606856 ATTTATTTAT
* * *
41606866 TTAGTCTGCCCCACTGCAATTTCAAGGG-GATAAGACTTGATTTC
1 TTAGTCTGCTCCACTGCAAATTC-AGGGAGATAAGACTCGATTTC
*
41606910 TTGAGTCTGCTCCACTGCAAATTCAGGGAGATAAGACTCGCTTTC
1 TT-AGTCTGCTCCACTGCAAATTCAGGGAGATAAGACTCGATTTC
* * * *
41606955 TTAGGTCTGCTCCACTGGAACTTCAGGGAGATAAGACCCGA--TG
1 TTA-GTCTGCTCCACTGCAAATTCAGGGAGATAAGACTCGATTTC
* * * ** *
41606998 TGA-TCTGCT-CTCTGCAACTTCAGATAGATAAGATCTGTGA-TT-
1 TTAGTCTGCTCCACTGCAAATTCAGGGAGATAAGA-CT-CGATTTC
* ** * * * *
41607040 TTAATCCACTCCACTGCAACTTCAGGGAGATAGGA-T-TATTGGC
1 TTAGTCTGCTCCACTGCAAATTCAGGGAGATAAGACTCGATT-TC
* * * * * ***
41607083 ATTAATCTGCTCCACTGTAACTTCAGGGAGATACGATTCGCCATC
1 -TTAGTCTGCTCCACTGCAAATTCAGGGAGATAAGACTCGATTTC
* * * * * *
41607128 TTCAGTCTGC-CTCACTACAACTTCA-GGAGGATAAGGCTTGCTTAC
1 TT-AGTCTGCTC-CACTGCAAATTCAGGGA-GATAAGACTCGATTTC
*
41607173 TTAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACT
1 TTAGTCTGCTCCACTGCAAATTCAGGGAGATAAGACT
41607210 AGATGCAATC
Statistics
Matches: 235, Mismatches: 46, Indels: 38
0.74 0.14 0.12
Matches are distributed among these distances:
40 21 0.09
41 8 0.03
42 5 0.02
43 8 0.03
44 91 0.39
45 102 0.43
ACGTcount: A:0.26, C:0.24, G:0.21, T:0.29
Consensus pattern (44 bp):
TTAGTCTGCTCCACTGCAAATTCAGGGAGATAAGACTCGATTTC
Found at i:41607194 original size:44 final size:43
Alignment explanation
Indices: 41606866--41607335 Score: 283
Period size: 44 Copynumber: 10.8 Consensus size: 43
41606856 ATTTATTTAT
* *
41606866 TTAGTCTGCCCCACTGCAATTTCAAGGG-GATAAGACTTGATTTC
1 TTAGTCTGCTCCACTGCAACTTC-AGGGAGATAAGACTTGA-TTC
* * *
41606910 TTGAGTCTGCTCCACTGCAAATTCAGGGAGATAAGACTCGCTTTC
1 TT-AGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTG-ATTC
* ** *
41606955 TTAGGTCTGCTCCACTGGAACTTCAGGGAGATAAGACCCGA-TG
1 TTA-GTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGATTC
* * **
41606998 TGA-TCTGCT-CTCTGCAACTTCAGATAGATAAGATCTGTGATT-
1 TTAGTCTGCTCCACTGCAACTTCAGGGAGATAAGA-CT-TGATTC
* ** *
41607040 TTAATCCACTCCACTGCAACTTCAGGGAGATAGGA-TT-ATTGGC
1 TTAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGATT--C
* * *
41607083 ATTAATCTGCTCCACTGTAACTTCAGGGAGATACGA-TTCGCCA-TC
1 -TTAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTT-G--ATTC
* * *
41607128 TTCAGTCTGC-CTCACTACAACTTCA-GGAGGATAAGGCTTGCTTAC
1 TT-AGTCTGCTC-CACTGCAACTTCAGGGA-GATAAGACTTGATT-C
* *
41607173 TTAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTAGATGC
1 TTAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGATTC
* * *
41607216 --AATCTGCT-CTCTGCAACTTCAGAGAGATAAGATCTGTGATT-
1 TTAGTCTGCTCCACTGCAACTTCAGGGAGATAAGA-CT-TGATTC
* ** * *
41607257 TTCA-TCCGCTCCACTGTGACTTTAGGGAGATAGGA-TT-ATTGGC
1 TT-AGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGATT--C
* * *
41607300 TTTAATCTTCTCCACTACAACTTCAGGGAGATAAGA
1 -TTAGTCTGCTCCACTGCAACTTCAGGGAGATAAGA
41607336 TTCGCCATCT
Statistics
Matches: 333, Mismatches: 57, Indels: 72
0.72 0.12 0.16
Matches are distributed among these distances:
40 48 0.14
41 18 0.05
42 9 0.03
43 15 0.05
44 141 0.42
45 98 0.29
46 2 0.01
47 1 0.00
48 1 0.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (43 bp):
TTAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGATTC
Found at i:41607227 original size:217 final size:218
Alignment explanation
Indices: 41606908--41607352 Score: 644
Period size: 217 Copynumber: 2.0 Consensus size: 218
41606898 AGACTTGATT
* * * *
41606908 TCTTGAGTCTGCTCCACTGCAAATTCAGGGAGATAAGACTCGCTTTCTTAGGTCTGCTCCACTGG
1 TCTTCAGTCTGCTCCACTACAAATTCAGGGAGATAAGACTCGCTTACTTAGGTCTGCTCCACTGC
* ** *
41606973 AACTTCAGGGAGATAAGACCCGATGTGATCTGCTCTCTGCAACTTCAGATAGATAAGATCTGTGA
66 AACTTCAGGGAGATAAGACCAGATGCAATCTGCTCTCTGCAACTTCAGAGAGATAAGATCTGTGA
**
41607038 TTTTAATCCACTCCACTGCAACTTCAGGGAGATAGGATTATTGGCATTAATCTGCTCCACTGTAA
131 TTTTAATCCACTCCACTGCAACTTCAGGGAGATAGGATTATTGGCATTAATCTGCTCCACTACAA
*
41607103 CTTCAGGGAGATACGATTCGCCA
196 CTTCAGGGAGATAAGATTCGCCA
* * *
41607126 TCTTCAGTCTGC-CTCACTACAACTTCA-GGAGGATAAGGCTTGCTTACTTA-GTCTGCTCCACT
1 TCTTCAGTCTGCTC-CACTACAAATTCAGGGA-GATAAGACTCGCTTACTTAGGTCTGCTCCACT
*
41607188 GCAACTTCAGGGAGATAAGACTAGATGCAATCTGCTCTCTGCAACTTCAGAGAGATAAGATCTGT
64 GCAACTTCAGGGAGATAAGACCAGATGCAATCTGCTCTCTGCAACTTCAGAGAGATAAGATCTGT
* * ** * * *
41607253 GATTTTCATCCGCTCCACTGTGACTTTAGGGAGATAGGATTATTGGCTTTAATCTTCTCCACTAC
129 GATTTTAATCCACTCCACTGCAACTTCAGGGAGATAGGATTATTGGCATTAATCTGCTCCACTAC
41607318 AACTTCAGGGAGATAAGATTCGCCA
194 AACTTCAGGGAGATAAGATTCGCCA
*
41607343 TCTTTAGTCT
1 TCTTCAGTCT
41607353 TTTAAATTGA
Statistics
Matches: 202, Mismatches: 23, Indels: 5
0.88 0.10 0.02
Matches are distributed among these distances:
217 164 0.81
218 38 0.19
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (218 bp):
TCTTCAGTCTGCTCCACTACAAATTCAGGGAGATAAGACTCGCTTACTTAGGTCTGCTCCACTGC
AACTTCAGGGAGATAAGACCAGATGCAATCTGCTCTCTGCAACTTCAGAGAGATAAGATCTGTGA
TTTTAATCCACTCCACTGCAACTTCAGGGAGATAGGATTATTGGCATTAATCTGCTCCACTACAA
CTTCAGGGAGATAAGATTCGCCA
Found at i:41607742 original size:44 final size:44
Alignment explanation
Indices: 41607692--41607855 Score: 242
Period size: 44 Copynumber: 3.7 Consensus size: 44
41607682 ATCTGCTATT
* **
41607692 TTCAACCTACTCCACTG-TTTCTCAGGGAGATAGGA-TTCACAATC
1 TTCAACCTATTCCACTGCTGAC-CAGGGAGATAGGACTT-ACAATC
*
41607736 TTCAACCTATTCCACTGCTGACCAGGGAAATAGGACTTACAATC
1 TTCAACCTATTCCACTGCTGACCAGGGAGATAGGACTTACAATC
*
41607780 TTCAACCTATTCCACTGCTGACCAGGGAGATAGGACTTACAATT
1 TTCAACCTATTCCACTGCTGACCAGGGAGATAGGACTTACAATC
*
41607824 TTCAACATATTCCACTGCTGACCAGGGAGATA
1 TTCAACCTATTCCACTGCTGACCAGGGAGATA
41607856 AAGCTTTGTG
Statistics
Matches: 111, Mismatches: 7, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
44 107 0.96
45 4 0.04
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.27
Consensus pattern (44 bp):
TTCAACCTATTCCACTGCTGACCAGGGAGATAGGACTTACAATC
Found at i:41609121 original size:18 final size:17
Alignment explanation
Indices: 41609100--41609153 Score: 53
Period size: 16 Copynumber: 3.4 Consensus size: 17
41609090 TTGGCCTCTC
41609100 CTTTTCCTCTTCTTCTTT
1 CTTTT-CTCTTCTTCTTT
*
41609118 CTTTT-TCTTTTTC-TT
1 CTTTTCTCTTCTTCTTT
*
41609133 -TTTTCTTTTCTT-TTT
1 CTTTTCTCTTCTTCTTT
41609148 CTTTTC
1 CTTTTC
41609154 CTTTTTTCCA
Statistics
Matches: 30, Mismatches: 3, Indels: 8
0.73 0.07 0.20
Matches are distributed among these distances:
14 4 0.13
15 9 0.30
16 12 0.40
18 5 0.17
ACGTcount: A:0.00, C:0.24, G:0.00, T:0.76
Consensus pattern (17 bp):
CTTTTCTCTTCTTCTTT
Found at i:41609123 original size:19 final size:19
Alignment explanation
Indices: 41609101--41609141 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 19
41609091 TGGCCTCTCC
41609101 TTTTCCTCTTCTTCTTTCT
1 TTTTCCTCTTCTTCTTTCT
* * *
41609120 TTTTCTTTTTCTTTTTTCT
1 TTTTCCTCTTCTTCTTTCT
41609139 TTT
1 TTT
41609142 CTTTTTCTTT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.00, C:0.22, G:0.00, T:0.78
Consensus pattern (19 bp):
TTTTCCTCTTCTTCTTTCT
Found at i:41609132 original size:12 final size:12
Alignment explanation
Indices: 41609109--41609159 Score: 68
Period size: 12 Copynumber: 4.2 Consensus size: 12
41609099 CCTTTTCCTC
41609109 TTCTTCTTTCTTT
1 TTCTT-TTTCTTT
41609122 TTCTTTTTCTTT
1 TTCTTTTTCTTT
41609134 TT-TCTTTTCTTT
1 TTCT-TTTTCTTT
*
41609146 TTCTTTTCCTTT
1 TTCTTTTTCTTT
41609158 TT
1 TT
41609160 TCCATCATCA
Statistics
Matches: 35, Mismatches: 1, Indels: 5
0.85 0.02 0.12
Matches are distributed among these distances:
11 1 0.03
12 28 0.80
13 6 0.17
ACGTcount: A:0.00, C:0.20, G:0.00, T:0.80
Consensus pattern (12 bp):
TTCTTTTTCTTT
Found at i:41609158 original size:24 final size:23
Alignment explanation
Indices: 41609100--41609161 Score: 88
Period size: 24 Copynumber: 2.6 Consensus size: 23
41609090 TTGGCCTCTC
*
41609100 CTTTTCCTCTTCTTCTTTCTTTTT
1 CTTTTCCT-TTTTTCTTTCTTTTT
*
41609124 CTTTTTCTTTTTTCTTTTCTTTTT
1 CTTTTCCTTTTTTC-TTTCTTTTT
41609148 CTTTTCCTTTTTTC
1 CTTTTCCTTTTTTC
41609162 CATCATCATT
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
23 5 0.15
24 29 0.85
ACGTcount: A:0.00, C:0.24, G:0.00, T:0.76
Consensus pattern (23 bp):
CTTTTCCTTTTTTCTTTCTTTTT
Found at i:41609159 original size:18 final size:17
Alignment explanation
Indices: 41609109--41609158 Score: 64
Period size: 18 Copynumber: 2.8 Consensus size: 17
41609099 CCTTTTCCTC
41609109 TTCTTCTTTCTTTTTCTTT
1 TTCTT-TTTC-TTTTCTTT
41609128 TTCTTTTTTCTTTTCTTT
1 TTC-TTTTTCTTTTCTTT
*
41609146 TTCTTTTCCTTTT
1 TTCTTTTTCTTTT
41609159 TTCCATCATC
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
17 9 0.31
18 11 0.38
19 7 0.24
20 2 0.07
ACGTcount: A:0.00, C:0.20, G:0.00, T:0.80
Consensus pattern (17 bp):
TTCTTTTTCTTTTCTTT
Found at i:41614044 original size:24 final size:25
Alignment explanation
Indices: 41614017--41614072 Score: 69
Period size: 24 Copynumber: 2.2 Consensus size: 25
41614007 TATTCATTAG
* *
41614017 AAACAATATACAAATCAATAAAA-A
1 AAACAATACACAAATCAACAAAATA
*
41614041 AAACTATACACAAATCAACAAAATA
1 AAACAATACACAAATCAACAAAATA
41614066 AGAACAA
1 A-AACAA
41614073 GCCACAGAAA
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
24 20 0.77
25 2 0.08
26 4 0.15
ACGTcount: A:0.68, C:0.16, G:0.02, T:0.14
Consensus pattern (25 bp):
AAACAATACACAAATCAACAAAATA
Found at i:41614310 original size:19 final size:19
Alignment explanation
Indices: 41614286--41614339 Score: 99
Period size: 19 Copynumber: 2.8 Consensus size: 19
41614276 AATCATATCT
41614286 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
*
41614305 TCTAAGATTACATATCATA
1 TCTAAGATTGCATATCATA
41614324 TCTAAGATTGCATATC
1 TCTAAGATTGCATATC
41614340 CTTGAAGATT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 33 1.00
ACGTcount: A:0.37, C:0.17, G:0.09, T:0.37
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:41614335 original size:38 final size:40
Alignment explanation
Indices: 41614263--41614339 Score: 113
Period size: 38 Copynumber: 1.9 Consensus size: 40
41614253 AAATTAAATC
41614263 TCTAAGATTACAAAATCATATCTTCTAAGATTGCATATCATA
1 TCTAAGATTACAAAATCATA--TTCTAAGATTGCATATCATA
*
41614305 TCTAAGATTAC-ATATCATA-TCTAAGATTGCATATC
1 TCTAAGATTACAAAATCATATTCTAAGATTGCATATC
41614340 CTTGAAGATT
Statistics
Matches: 34, Mismatches: 1, Indels: 4
0.87 0.03 0.10
Matches are distributed among these distances:
38 16 0.47
41 7 0.21
42 11 0.32
ACGTcount: A:0.39, C:0.17, G:0.08, T:0.36
Consensus pattern (40 bp):
TCTAAGATTACAAAATCATATTCTAAGATTGCATATCATA
Found at i:41617359 original size:57 final size:58
Alignment explanation
Indices: 41617286--41617398 Score: 167
Period size: 57 Copynumber: 2.0 Consensus size: 58
41617276 AAAACACCAG
41617286 AAAAAGGACAACCTTTGTAG-AAAAACTCTAGAAAGGCAAGCCTTTGTGGCCAACCTAT
1 AAAAAGGACAACCTTTGTAGCAAAAA-TCTAGAAAGGCAAGCCTTTGTGGCCAACCTAT
* * * *
41617344 AAAAA-GACAGCCTTTGTGGCAAAAATTTAGAAAGGCAAGCCTTTGTGGCGAACCT
1 AAAAAGGACAACCTTTGTAGCAAAAATCTAGAAAGGCAAGCCTTTGTGGCCAACCT
41617399 GTGGCAAAAC
Statistics
Matches: 50, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
57 40 0.80
58 10 0.20
ACGTcount: A:0.38, C:0.19, G:0.21, T:0.21
Consensus pattern (58 bp):
AAAAAGGACAACCTTTGTAGCAAAAATCTAGAAAGGCAAGCCTTTGTGGCCAACCTAT
Found at i:41617392 original size:29 final size:29
Alignment explanation
Indices: 41617288--41617392 Score: 99
Period size: 29 Copynumber: 3.7 Consensus size: 29
41617278 AACACCAGAA
* *
41617288 AAAGGACAA-CCTTTGTAG-AAAAACTCTAG
1 AAAGG-CAAGCCTTTGTGGCAAAAA-TATAG
* ** *
41617317 AAAGGCAAGCCTTTGTGGCCAACCTATAA
1 AAAGGCAAGCCTTTGTGGCAAAAATATAG
* *
41617346 AAAGAC-AGCCTTTGTGGCAAAAATTTAG
1 AAAGGCAAGCCTTTGTGGCAAAAATATAG
41617374 AAAGGCAAGCCTTTGTGGC
1 AAAGGCAAGCCTTTGTGGC
41617393 GAACCTGTGG
Statistics
Matches: 60, Mismatches: 13, Indels: 6
0.76 0.16 0.08
Matches are distributed among these distances:
28 25 0.42
29 33 0.55
30 2 0.03
ACGTcount: A:0.37, C:0.19, G:0.22, T:0.22
Consensus pattern (29 bp):
AAAGGCAAGCCTTTGTGGCAAAAATATAG
Found at i:41617402 original size:40 final size:40
Alignment explanation
Indices: 41617358--41617440 Score: 130
Period size: 40 Copynumber: 2.1 Consensus size: 40
41617348 AGACAGCCTT
* *
41617358 TGTGGCAAAAATTTAGAAAGGCAAGCCTTTGTGGCGAACC
1 TGTGGCAAAAATCTAGAAAGGCAAGCCTTTGTAGCGAACC
* *
41617398 TGTGGCAAAACTCTGGAAAGGCAAGCCTTTGTAGCGAACC
1 TGTGGCAAAAATCTAGAAAGGCAAGCCTTTGTAGCGAACC
41617438 TGT
1 TGT
41617441 TAAAGGACAA
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
40 39 1.00
ACGTcount: A:0.30, C:0.19, G:0.28, T:0.23
Consensus pattern (40 bp):
TGTGGCAAAAATCTAGAAAGGCAAGCCTTTGTAGCGAACC
Found at i:41617454 original size:28 final size:28
Alignment explanation
Indices: 41617414--41617514 Score: 100
Period size: 28 Copynumber: 3.6 Consensus size: 28
41617404 AAAACTCTGG
41617414 AAAGG-CAAGCCTTTGTAGCGAACCTGTT
1 AAAGGACAA-CCTTTGTAGCGAACCTGTT
* *
41617442 AAAGGACAACCTTTGTAGCAAAACT-TT
1 AAAGGACAACCTTTGTAGCGAACCTGTT
* *
41617469 GGAAAGGGA-AACCTTTGTGGCGAACATGTT
1 --AAA-GGACAACCTTTGTAGCGAACCTGTT
*
41617499 AAAGGACAACGTTTGT
1 AAAGGACAACCTTTGT
41617515 GGTAAAACTC
Statistics
Matches: 60, Mismatches: 7, Indels: 12
0.76 0.09 0.15
Matches are distributed among these distances:
27 5 0.08
28 30 0.50
29 20 0.33
30 5 0.08
ACGTcount: A:0.34, C:0.17, G:0.25, T:0.25
Consensus pattern (28 bp):
AAAGGACAACCTTTGTAGCGAACCTGTT
Found at i:41617466 original size:57 final size:57
Alignment explanation
Indices: 41617398--41617687 Score: 296
Period size: 57 Copynumber: 5.1 Consensus size: 57
41617388 GTGGCGAACC
* *
41617398 TGTGGCAAAACTCTGGAAAGGCAAGCCTTTGTAGCGAACCTGTTAAAGGACAACCTT
1 TGTGGCAAAACTCTGGAAAGGCAAACCTTTGTGGCGAACCTGTTAAAGGACAACCTT
* * * * *
41617455 TGTAGCAAAACTTTGGAAAGGGAAACCTTTGTGGCGAACATGTTAAAGGACAACGTT
1 TGTGGCAAAACTCTGGAAAGGCAAACCTTTGTGGCGAACCTGTTAAAGGACAACCTT
* ** * * * * *
41617512 TGTGGTAAAACTCTAAAAAGGAAAACCTTTGTGGCGAACCTATAAAAGGATAGCCTT
1 TGTGGCAAAACTCTGGAAAGGCAAACCTTTGTGGCGAACCTGTTAAAGGACAACCTT
* * * * *
41617569 TGTGGCAAAATTTTGGAAAGGCAAACCTTTGTGGTGAACCTGTTTAAGGACAACGTT
1 TGTGGCAAAACTCTGGAAAGGCAAACCTTTGTGGCGAACCTGTTAAAGGACAACCTT
* * * * ** * * *
41617626 TGTGGCAGAACTC-CGAAAGGGTAAGCCTTCATGGAGAACCTTTTAAAGGAC-TCCTT
1 TGTGGCAAAACTCTGGAAA-GGCAAACCTTTGTGGCGAACCTGTTAAAGGACAACCTT
41617682 TGTGGC
1 TGTGGC
41617688 TATATCTGGA
Statistics
Matches: 187, Mismatches: 45, Indels: 3
0.80 0.19 0.01
Matches are distributed among these distances:
56 13 0.07
57 174 0.93
ACGTcount: A:0.32, C:0.17, G:0.25, T:0.26
Consensus pattern (57 bp):
TGTGGCAAAACTCTGGAAAGGCAAACCTTTGTGGCGAACCTGTTAAAGGACAACCTT
Found at i:41617474 original size:97 final size:97
Alignment explanation
Indices: 41617307--41617493 Score: 266
Period size: 97 Copynumber: 1.9 Consensus size: 97
41617297 CCTTTGTAGA
* * *
41617307 AAAACTCTAGAAAGGCAAGCCTTTGTGGCCAACCTATAAAAAGACAGCCTTTGTGGCAAAAATTT
1 AAAACTCTAGAAAGGCAAGCCTTTGTAGCCAACCTATAAAAAGACAACCTTTGTAGCAAAAATTT
*
41617372 AGAAAGGCAAGCCTTTGTGGCGAACCTGTGGC
66 AGAAAGGCAAACCTTTGTGGCGAACCTGTGGC
* * * * * *
41617404 AAAACTCTGGAAAGGCAAGCCTTTGTAGCGAACCTGTTAAAGGACAACCTTTGTAGCAAAACTTT
1 AAAACTCTAGAAAGGCAAGCCTTTGTAGCCAACCTATAAAAAGACAACCTTTGTAGCAAAAATTT
* *
41617469 GGAAAGGGAAACCTTTGTGGCGAAC
66 AGAAAGGCAAACCTTTGTGGCGAAC
41617494 ATGTTAAAGG
Statistics
Matches: 78, Mismatches: 12, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
97 78 1.00
ACGTcount: A:0.34, C:0.20, G:0.24, T:0.22
Consensus pattern (97 bp):
AAAACTCTAGAAAGGCAAGCCTTTGTAGCCAACCTATAAAAAGACAACCTTTGTAGCAAAAATTT
AGAAAGGCAAACCTTTGTGGCGAACCTGTGGC
Found at i:41617482 original size:29 final size:29
Alignment explanation
Indices: 41617402--41617486 Score: 86
Period size: 28 Copynumber: 3.0 Consensus size: 29
41617392 CGAACCTGTG
* * *
41617402 GCAAAACTCTGGAAAGGCAAGCCTTTGTA
1 GCAAAACTTTGGAAAGGGAAACCTTTGTA
* *
41617431 GCGAACCTGTT--AAA-GGACAACCTTTGTA
1 GCAAAACT-TTGGAAAGGGA-AACCTTTGTA
41617459 GCAAAACTTTGGAAAGGGAAACCTTTGT
1 GCAAAACTTTGGAAAGGGAAACCTTTGT
41617487 GGCGAACATG
Statistics
Matches: 44, Mismatches: 7, Indels: 10
0.72 0.11 0.16
Matches are distributed among these distances:
27 4 0.09
28 18 0.41
29 18 0.41
30 4 0.09
ACGTcount: A:0.34, C:0.19, G:0.24, T:0.24
Consensus pattern (29 bp):
GCAAAACTTTGGAAAGGGAAACCTTTGTA
Found at i:41617542 original size:29 final size:29
Alignment explanation
Indices: 41617499--41617603 Score: 79
Period size: 29 Copynumber: 3.7 Consensus size: 29
41617489 CGAACATGTT
* *
41617499 AAAGGACAACGTTTGTGGTAAAACTCTAA
1 AAAGGAAAACCTTTGTGGTAAAACTCTAA
**
41617528 AAAGGAAAACCTTTGTGG-CGAAC-CTATA
1 AAAGGAAAACCTTTGTGGTAAAACTCTA-A
* * * * * **
41617556 AAAGGATAGCCTTTGTGGCAAAATTTTGG
1 AAAGGAAAACCTTTGTGGTAAAACTCTAA
*
41617585 AAAGGCAAACCTTTGTGGT
1 AAAGGAAAACCTTTGTGGT
41617604 GAACCTGTTT
Statistics
Matches: 57, Mismatches: 16, Indels: 6
0.72 0.20 0.08
Matches are distributed among these distances:
27 3 0.05
28 20 0.35
29 33 0.58
30 1 0.02
ACGTcount: A:0.36, C:0.14, G:0.24, T:0.26
Consensus pattern (29 bp):
AAAGGAAAACCTTTGTGGTAAAACTCTAA
Found at i:41617598 original size:114 final size:114
Alignment explanation
Indices: 41617398--41617638 Score: 329
Period size: 114 Copynumber: 2.1 Consensus size: 114
41617388 GTGGCGAACC
** * * * *
41617398 TGTGGCAAAACTCTGGAAAGGCAAGCCTTTGTAGCGAACCTGTTAAAGGACAACCTTTGTAGCAA
1 TGTGGCAAAACTCTAAAAAGGAAAACCTTTGTAGCGAACCTATAAAAGGACAACCTTTGTAGCAA
*
41617463 AACTTTGGAAAGGGAAACCTTTGTGGCGAACATGTTAAAGGACAACGTT
66 AACTTTGGAAAGGCAAACCTTTGTGGCGAACATGTTAAAGGACAACGTT
* * * * *
41617512 TGTGGTAAAACTCTAAAAAGGAAAACCTTTGTGGCGAACCTATAAAAGGATAGCCTTTGTGGCAA
1 TGTGGCAAAACTCTAAAAAGGAAAACCTTTGTAGCGAACCTATAAAAGGACAACCTTTGTAGCAA
* * * *
41617577 AATTTTGGAAAGGCAAACCTTTGTGGTGAACCTGTTTAAGGACAACGTT
66 AACTTTGGAAAGGCAAACCTTTGTGGCGAACATGTTAAAGGACAACGTT
*
41617626 TGTGGCAGAACTC
1 TGTGGCAAAACTC
41617639 CGAAAGGGTA
Statistics
Matches: 109, Mismatches: 18, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
114 109 1.00
ACGTcount: A:0.33, C:0.17, G:0.25, T:0.25
Consensus pattern (114 bp):
TGTGGCAAAACTCTAAAAAGGAAAACCTTTGTAGCGAACCTATAAAAGGACAACCTTTGTAGCAA
AACTTTGGAAAGGCAAACCTTTGTGGCGAACATGTTAAAGGACAACGTT
Found at i:41620537 original size:18 final size:17
Alignment explanation
Indices: 41620504--41620542 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 17
41620494 TTTTATAAAT
41620504 TGTGAATTATATTTGATA
1 TGTGAATTATATTTGA-A
41620522 TGTGAATTA-ATATTGAA
1 TGTGAATTATAT-TTGAA
41620539 TGTG
1 TGTG
41620543 GAAGGAAAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
17 7 0.35
18 13 0.65
ACGTcount: A:0.33, C:0.00, G:0.21, T:0.46
Consensus pattern (17 bp):
TGTGAATTATATTTGAA
Found at i:41620787 original size:23 final size:23
Alignment explanation
Indices: 41620760--41620880 Score: 167
Period size: 23 Copynumber: 5.3 Consensus size: 23
41620750 AGTGTTATTG
41620760 ATCAGTGGTAGCTTCGGCTACA-
1 ATCAGTGGTAGCTTCGGCTACAT
*
41620782 ATTCAGTGGTAGCTACGGCTACAT
1 A-TCAGTGGTAGCTTCGGCTACAT
41620806 ATC-GTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
* * *
41620828 TTTAGTGGTAG-TTGCGGTTACAT
1 ATCAGTGGTAGCTT-CGGCTACAT
41620851 ATCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
41620874 ATCAGTG
1 ATCAGTG
41620881 TGGCACTTAT
Statistics
Matches: 86, Mismatches: 8, Indels: 9
0.83 0.08 0.09
Matches are distributed among these distances:
22 22 0.26
23 61 0.71
24 3 0.03
ACGTcount: A:0.21, C:0.19, G:0.27, T:0.32
Consensus pattern (23 bp):
ATCAGTGGTAGCTTCGGCTACAT
Found at i:41620835 original size:45 final size:46
Alignment explanation
Indices: 41620760--41620880 Score: 181
Period size: 45 Copynumber: 2.7 Consensus size: 46
41620750 AGTGTTATTG
*
41620760 ATCAGTGGTAGCTTCGGCTACAATTCAGTGGTAGCTACGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACATTTCAGTGGTAGCTACGGCTACAT
* * * *
41620806 ATC-GTGGTAGCTTCGGCTACATTTTAGTGGTAGTTGCGGTTACAT
1 ATCAGTGGTAGCTTCGGCTACATTTCAGTGGTAGCTACGGCTACAT
*
41620851 ATCAGTGGTAGCTTCGGCTACATATCAGTG
1 ATCAGTGGTAGCTTCGGCTACATTTCAGTG
41620881 TGGCACTTAT
Statistics
Matches: 67, Mismatches: 7, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
45 40 0.60
46 27 0.40
ACGTcount: A:0.21, C:0.19, G:0.27, T:0.32
Consensus pattern (46 bp):
ATCAGTGGTAGCTTCGGCTACATTTCAGTGGTAGCTACGGCTACAT
Found at i:41621130 original size:23 final size:25
Alignment explanation
Indices: 41621084--41621131 Score: 64
Period size: 23 Copynumber: 2.0 Consensus size: 25
41621074 GAAATTGCTA
* *
41621084 AGAAATGTTTGATTAGTTATATGAG
1 AGAAATGTTTAATTAGTTAAATGAG
41621109 AGAAATG-TTAATT-GTTAAATGAG
1 AGAAATGTTTAATTAGTTAAATGAG
41621132 TATTTATAGT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
23 9 0.43
24 5 0.24
25 7 0.33
ACGTcount: A:0.40, C:0.00, G:0.23, T:0.38
Consensus pattern (25 bp):
AGAAATGTTTAATTAGTTAAATGAG
Found at i:41634508 original size:30 final size:30
Alignment explanation
Indices: 41634472--41634532 Score: 122
Period size: 30 Copynumber: 2.0 Consensus size: 30
41634462 AGTTAACTCG
41634472 TACAGGGATGATGGATCTAGAAGAAGGAAT
1 TACAGGGATGATGGATCTAGAAGAAGGAAT
41634502 TACAGGGATGATGGATCTAGAAGAAGGAAT
1 TACAGGGATGATGGATCTAGAAGAAGGAAT
41634532 T
1 T
41634533 CACGAAGACA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.39, C:0.07, G:0.33, T:0.21
Consensus pattern (30 bp):
TACAGGGATGATGGATCTAGAAGAAGGAAT
Found at i:41638909 original size:28 final size:27
Alignment explanation
Indices: 41638866--41638918 Score: 72
Period size: 29 Copynumber: 1.9 Consensus size: 27
41638856 TAAACATTAC
*
41638866 TCTCTTTTTTTCTCTT-TATTTTCCAT
1 TCTCTTTGTTTCTCTTCTATTTTCCAT
41638892 TCTCTTATGTTTCTTCTTCTATTTTCC
1 TCTCTT-TGTTTC-TCTTCTATTTTCC
41638919 TACTTTCTCC
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
26 6 0.26
27 5 0.22
28 4 0.17
29 8 0.35
ACGTcount: A:0.08, C:0.25, G:0.02, T:0.66
Consensus pattern (27 bp):
TCTCTTTGTTTCTCTTCTATTTTCCAT
Found at i:41639929 original size:18 final size:17
Alignment explanation
Indices: 41639902--41639936 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
41639892 GCGTATGAAT
*
41639902 ATAAAGATAATAATAAAA
1 ATAAAAATAA-AATAAAA
41639920 ATAAAAATAAAATAAAA
1 ATAAAAATAAAATAAAA
41639937 TAATGGTATA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 7 0.44
18 9 0.56
ACGTcount: A:0.77, C:0.00, G:0.03, T:0.20
Consensus pattern (17 bp):
ATAAAAATAAAATAAAA
Found at i:41639970 original size:18 final size:18
Alignment explanation
Indices: 41639949--41639984 Score: 56
Period size: 18 Copynumber: 2.0 Consensus size: 18
41639939 ATGGTATAAC
41639949 ATAATTATAAT-AATAAAA
1 ATAATTA-AATAAATAAAA
41639967 ATAATTAAATAAATAAAA
1 ATAATTAAATAAATAAAA
41639985 TAGCTGAAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 3 0.18
18 14 0.82
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (18 bp):
ATAATTAAATAAATAAAA
Found at i:41639985 original size:17 final size:17
Alignment explanation
Indices: 41639944--41639986 Score: 52
Period size: 18 Copynumber: 2.5 Consensus size: 17
41639934 AAATAATGGT
*
41639944 ATAACATAATTATAATA
1 ATAAAATAATTATAATA
41639961 ATAAAAATAATTA-AATAA
1 AT-AAAATAATTATAAT-A
41639979 ATAAAATA
1 ATAAAATA
41639987 GCTGAAAAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
17 11 0.48
18 12 0.52
ACGTcount: A:0.67, C:0.02, G:0.00, T:0.30
Consensus pattern (17 bp):
ATAAAATAATTATAATA
Found at i:41642089 original size:100 final size:99
Alignment explanation
Indices: 41641911--41642272 Score: 472
Period size: 100 Copynumber: 3.6 Consensus size: 99
41641901 CTAGGGAGAT
* * * * * * * * * *
41641911 AAGATTCACCGTCGTGGCTTCAATCTGCTCCGCTACAACGCCAGGGAAATGAGATTCGCCATTGT
1 AAGATTCGCCATCGTAGCTTCAATCTGTTCCACTACAACGCCAAGGAAGTAAGATTCGCCGTTGC
*
41641976 GGCTTCAACCTTTTTAATTGCAATGTTGGGAAAAC
66 GGCTTCAATCTTTTTAATTGCAATGTTGGG-AAAC
** * *
41642011 AAGATTCGCTGTCGTAGCTTCAATCTGTTCCACTACACCGCCAAGGAAGTAAGATTCGTCGTTGC
1 AAGATTCGCCATCGTAGCTTCAATCTGTTCCACTACAACGCCAAGGAAGTAAGATTCGCCGTTGC
41642076 GGCTTCAATCTTTTTAATTGCAATGTTGGGGAAAC
66 GGCTTCAATCTTTTTAATTGCAATGTT-GGGAAAC
* * * *
41642111 AAGATTCGCCATCGTAGCTTCAATCTGTTCCATTACATCGCCAATGAAGTAAGATTTGCCGTTGC
1 AAGATTCGCCATCGTAGCTTCAATCTGTTCCACTACAACGCCAAGGAAGTAAGATTCGCCGTTGC
41642176 GGCTTCAATCTTTTTAATTGCAATGTTAGGGAAAC
66 GGCTTCAATCTTTTTAATTGCAATGTT-GGGAAAC
* * * * * *
41642211 GAGATTCGCCATCGTAGCTTCAATCTGTTTCACTACAATGCCAGGGGAGGAAGATTCGCCGT
1 AAGATTCGCCATCGTAGCTTCAATCTGTTCCACTACAACGCCAAGGAAGTAAGATTCGCCGT
41642273 CGTAGTTTAA
Statistics
Matches: 230, Mismatches: 31, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
100 227 0.99
101 3 0.01
ACGTcount: A:0.26, C:0.23, G:0.22, T:0.30
Consensus pattern (99 bp):
AAGATTCGCCATCGTAGCTTCAATCTGTTCCACTACAACGCCAAGGAAGTAAGATTCGCCGTTGC
GGCTTCAATCTTTTTAATTGCAATGTTGGGAAAC
Found at i:41642250 original size:50 final size:50
Alignment explanation
Indices: 41641911--41642275 Score: 194
Period size: 50 Copynumber: 7.3 Consensus size: 50
41641901 CTAGGGAGAT
* * * ** * *
41641911 AAGATTCACCGTCGTGGCTTCAATCTGCTCCGCTACAACGCCAGGGAAAT
1 AAGATTCGCCGTCGTGGCTTCAATCTGTTTCATTACAATGCCAGGGAAAC
* * * * * * * **
41641961 GAGATTCGCCATTGTGGCTTCAACCTTTTTAATTGCAATG-TTGGGAAAAC
1 AAGATTCGCCGTCGTGGCTTCAATCTGTTTCATTACAATGCCAGGG-AAAC
* * * * ** * **
41642011 AAGATTCGCTGTCGTAGCTTCAATCTGTTCCACTACACCGCCAAGGAAGT
1 AAGATTCGCCGTCGTGGCTTCAATCTGTTTCATTACAATGCCAGGGAAAC
* * * * * * ***
41642061 AAGATTCGTCGTTGCGGCTTCAATCTTTTTAATTGCAATGTTGGGGAAAC
1 AAGATTCGCCGTCGTGGCTTCAATCTGTTTCATTACAATGCCAGGGAAAC
* * * ** **
41642111 AAGATTCGCCATCGTAGCTTCAATCTGTTCCATTAC-ATCGCCAATGAAGT
1 AAGATTCGCCGTCGTGGCTTCAATCTGTTTCATTACAAT-GCCAGGGAAAC
* * * * * * **
41642161 AAGATTTGCCGTTGCGGCTTCAATCTTTTTAATTGCAATGTTAGGGAAAC
1 AAGATTCGCCGTCGTGGCTTCAATCTGTTTCATTACAATGCCAGGGAAAC
* * * * * **
41642211 GAGATTCGCCATCGTAGCTTCAATCTGTTTCACTACAATGCCAGGGGAGG
1 AAGATTCGCCGTCGTGGCTTCAATCTGTTTCATTACAATGCCAGGGAAAC
41642261 AAGATTCGCCGTCGT
1 AAGATTCGCCGTCGT
41642276 AGTTTAAATC
Statistics
Matches: 211, Mismatches: 100, Indels: 8
0.66 0.31 0.03
Matches are distributed among these distances:
49 5 0.02
50 202 0.96
51 4 0.02
ACGTcount: A:0.25, C:0.23, G:0.22, T:0.30
Consensus pattern (50 bp):
AAGATTCGCCGTCGTGGCTTCAATCTGTTTCATTACAATGCCAGGGAAAC
Found at i:41650375 original size:15 final size:15
Alignment explanation
Indices: 41650357--41650388 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
41650347 AAATGTCGCG
41650357 ATAACAAATACAACA
1 ATAACAAATACAACA
*
41650372 ATAATAAATACAACA
1 ATAACAAATACAACA
41650387 AT
1 AT
41650389 GGCATAGAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.66, C:0.16, G:0.00, T:0.19
Consensus pattern (15 bp):
ATAACAAATACAACA
Found at i:41650414 original size:13 final size:14
Alignment explanation
Indices: 41650395--41650431 Score: 51
Period size: 13 Copynumber: 2.7 Consensus size: 14
41650385 CAATGGCATA
41650395 GAAATAATATAAAC
1 GAAATAATATAAAC
41650409 -AAATAA-ATAAAC
1 GAAATAATATAAAC
41650421 GAAACTAATAT
1 GAAA-TAATAT
41650432 TCATAAAAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 5
0.80 0.00 0.20
Matches are distributed among these distances:
12 6 0.30
13 9 0.45
14 3 0.15
15 2 0.10
ACGTcount: A:0.65, C:0.08, G:0.05, T:0.22
Consensus pattern (14 bp):
GAAATAATATAAAC
Found at i:41650717 original size:24 final size:24
Alignment explanation
Indices: 41650677--41650722 Score: 58
Period size: 24 Copynumber: 1.9 Consensus size: 24
41650667 AAAAATACAT
*
41650677 AAATATATGTATATTTATAAAATA
1 AAATATATGTATATTTAAAAAATA
*
41650701 AAATAATATGTGT-TTTAAAAAA
1 AAAT-ATATGTATATTTAAAAAA
41650723 ATAAGTAAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
24 12 0.63
25 7 0.37
ACGTcount: A:0.54, C:0.00, G:0.07, T:0.39
Consensus pattern (24 bp):
AAATATATGTATATTTAAAAAATA
Found at i:41650813 original size:4 final size:4
Alignment explanation
Indices: 41650804--41650828 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
41650794 AGAGAAGAGA
41650804 AAAT AAAT AAAT AAAT AAAT AAAT A
1 AAAT AAAT AAAT AAAT AAAT AAAT A
41650829 TACATACATG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (4 bp):
AAAT
Found at i:41650846 original size:2 final size:2
Alignment explanation
Indices: 41650839--41650887 Score: 55
Period size: 2 Copynumber: 25.0 Consensus size: 2
41650829 TACATACATG
* * * *
41650839 TA TA TA TA TA -A TA AA TA GA TA TA TG CA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
41650880 TA TA TA TA
1 TA TA TA TA
41650888 GATTATAGAA
Statistics
Matches: 38, Mismatches: 8, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
1 1 0.03
2 37 0.97
ACGTcount: A:0.51, C:0.02, G:0.04, T:0.43
Consensus pattern (2 bp):
TA
Found at i:41650852 original size:31 final size:33
Alignment explanation
Indices: 41650817--41650894 Score: 92
Period size: 33 Copynumber: 2.5 Consensus size: 33
41650807 TAAATAAATA
*
41650817 AATAAATA-A-ATATACATACATGTATATATAT
1 AATAAATAGATATATACATACATATATATATAT
* *
41650848 AATAAATAGATATATGCATATATATATATATAT
1 AATAAATAGATATATACATACATATATATATAT
*
41650881 -ATATATAGAT-TATA
1 AATAAATAGATATATA
41650895 GAAAAGATAA
Statistics
Matches: 40, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
31 11 0.28
32 10 0.25
33 19 0.47
ACGTcount: A:0.53, C:0.04, G:0.05, T:0.38
Consensus pattern (33 bp):
AATAAATAGATATATACATACATATATATATAT
Found at i:41650852 original size:39 final size:39
Alignment explanation
Indices: 41650809--41650887 Score: 95
Period size: 39 Copynumber: 2.0 Consensus size: 39
41650799 AGAGAAAATA
*
41650809 AATAAATAAATAAATAAATATACATACATGTATATATAT
1 AATAAATAAATAAATAAATATACATACATATATATATAT
* * ** * *
41650848 AATAAATAGATATATGCATATATATATATATATATATAT
1 AATAAATAAATAAATAAATATACATACATATATATATAT
41650887 A
1 A
41650888 GATTATAGAA
Statistics
Matches: 33, Mismatches: 7, Indels: 0
0.82 0.17 0.00
Matches are distributed among these distances:
39 33 1.00
ACGTcount: A:0.56, C:0.04, G:0.04, T:0.37
Consensus pattern (39 bp):
AATAAATAAATAAATAAATATACATACATATATATATAT
Found at i:41651222 original size:18 final size:17
Alignment explanation
Indices: 41651199--41651233 Score: 61
Period size: 17 Copynumber: 2.0 Consensus size: 17
41651189 GCGTATGAAT
41651199 ATAAAAATAAAAATAAAA
1 ATAAAAAT-AAAATAAAA
41651217 ATAAAAATAAAATAAAA
1 ATAAAAATAAAATAAAA
41651234 TAATGGTATA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 9 0.53
18 8 0.47
ACGTcount: A:0.83, C:0.00, G:0.00, T:0.17
Consensus pattern (17 bp):
ATAAAAATAAAATAAAA
Found at i:41651236 original size:5 final size:6
Alignment explanation
Indices: 41651199--41651233 Score: 63
Period size: 6 Copynumber: 6.0 Consensus size: 6
41651189 GCGTATGAAT
41651199 ATAAAA ATAAAA ATAAAA ATAAAA AT-AAA ATAAAA
1 ATAAAA ATAAAA ATAAAA ATAAAA ATAAAA ATAAAA
41651234 TAATGGTATA
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
5 5 0.18
6 23 0.82
ACGTcount: A:0.83, C:0.00, G:0.00, T:0.17
Consensus pattern (6 bp):
ATAAAA
Found at i:41651267 original size:18 final size:18
Alignment explanation
Indices: 41651198--41651275 Score: 54
Period size: 18 Copynumber: 4.4 Consensus size: 18
41651188 TGCGTATGAA
* *
41651198 TATAAAAATAAAAATAAA
1 TATAATAATAAAAATAAT
* *
41651216 AATAAAAAT-AAAATAA-
1 TATAATAATAAAAATAAT
* ** *
41651232 AATAATGGTATAACATAAT
1 TATAATAATA-AAAATAAT
41651251 TATAATAATAAAAATAAT
1 TATAATAATAAAAATAAT
41651269 TA-AATAA
1 TATAATAA
41651276 ACAAAATAGC
Statistics
Matches: 48, Mismatches: 9, Indels: 7
0.75 0.14 0.11
Matches are distributed among these distances:
16 6 0.12
17 12 0.25
18 23 0.48
19 7 0.15
ACGTcount: A:0.69, C:0.01, G:0.03, T:0.27
Consensus pattern (18 bp):
TATAATAATAAAAATAAT
Found at i:41654171 original size:42 final size:42
Alignment explanation
Indices: 41654061--41654269 Score: 271
Period size: 42 Copynumber: 5.0 Consensus size: 42
41654051 GCTTACAGAA
* *
41654061 AAAAAACGCCGCTAAAGATCATGTTCATTAGCGGCGCTAAGG
1 AAAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTAGG
**
41654103 AAATAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTATT
1 AAA-AAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTAGG
*
41654146 AAAAAACACCGCTAAAGATCATGTTCTTTAGCGGCGCTTAGG
1 AAAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTAGG
*
41654188 AAAAAACGCCGCTAAAGATCGTGTTCTTTAGCGGCGCTT-GG
1 AAAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTAGG
* * * *
41654229 TCAAAAATGCTGCTAAA-AGT-AGTGTTCTTTAACGGCGCTTA
1 -AAAAAACGCCGCTAAAGA-TCA-TGTTCTTTAGCGGCGCTTA
41654270 TTTCACAAAC
Statistics
Matches: 148, Mismatches: 14, Indels: 9
0.87 0.08 0.05
Matches are distributed among these distances:
41 3 0.02
42 107 0.72
43 38 0.26
ACGTcount: A:0.32, C:0.21, G:0.22, T:0.26
Consensus pattern (42 bp):
AAAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTAGG
Found at i:41654235 original size:85 final size:85
Alignment explanation
Indices: 41654061--41654235 Score: 280
Period size: 85 Copynumber: 2.1 Consensus size: 85
41654051 GCTTACAGAA
*
41654061 AAAAAACGCCGCTAAAGATCATGTTCATTAGCGGCGCTAAGGAAATAAACGCCGCTAAAGATCAT
1 AAAAAACACCGCTAAAGATCATGTTCATTAGCGGCGCTAAGGAAATAAACGCCGCTAAAGATCAT
*
41654126 GTTCTTTAGCGGCGCTTATT
66 GTTCTTTAGCGGCGCTTATC
* * *
41654146 AAAAAACACCGCTAAAGATCATGTTCTTTAGCGGCGCTTAGGAAA-AAACGCCGCTAAAGATCGT
1 AAAAAACACCGCTAAAGATCATGTTCATTAGCGGCGCTAAGGAAATAAACGCCGCTAAAGATCAT
*
41654210 GTTCTTTAGCGGCGCTTGGTC
66 GTTCTTTAGCGGCGCTT-ATC
41654231 AAAAA
1 AAAAA
41654236 TGCTGCTAAA
Statistics
Matches: 83, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
84 35 0.42
85 48 0.58
ACGTcount: A:0.33, C:0.21, G:0.22, T:0.24
Consensus pattern (85 bp):
AAAAAACACCGCTAAAGATCATGTTCATTAGCGGCGCTAAGGAAATAAACGCCGCTAAAGATCAT
GTTCTTTAGCGGCGCTTATC
Found at i:41654753 original size:21 final size:21
Alignment explanation
Indices: 41654700--41654795 Score: 66
Period size: 21 Copynumber: 4.4 Consensus size: 21
41654690 TTCTTTTGAA
* **
41654700 CCTCTGCTTCTATCGCTACTT
1 CCTCTGCTTCTCTCGCTACAG
* *
41654721 CTCTCGCTGCTTCTCTTGCTACGG
1 C-CT--CTGCTTCTCTCGCTACAG
**
41654745 CCTCTGCTTCTCTCGCTGTAG
1 CCTCTGCTTCTCTCGCTACAG
* * * *
41654766 CCTCTGCTTCCCTCACTGCCG
1 CCTCTGCTTCTCTCGCTACAG
41654787 CCTCTGCTT
1 CCTCTGCTT
41654796 TAAGTTGTTG
Statistics
Matches: 60, Mismatches: 12, Indels: 6
0.77 0.15 0.08
Matches are distributed among these distances:
21 41 0.68
22 2 0.03
23 2 0.03
24 15 0.25
ACGTcount: A:0.05, C:0.42, G:0.16, T:0.38
Consensus pattern (21 bp):
CCTCTGCTTCTCTCGCTACAG
Found at i:41656927 original size:25 final size:25
Alignment explanation
Indices: 41656896--41657134 Score: 128
Period size: 25 Copynumber: 8.9 Consensus size: 25
41656886 ATTTTTCTCA
41656896 ATGTAAGTTATGTATTAAGTAAATT
1 ATGTAAGTTATGTATTAAGTAAATT
*
41656921 ATGTAAGTTATGTA-TATAGTATAAAAGAT
1 ATGTAAGTTATGTATTA-AG--T-AAA-TT
* *
41656950 ATGTAAGTTATGTATTATGTAAGTT
1 ATGTAAGTTATGTATTAAGTAAATT
**
41656975 ATGTAAGTTATGTAGGTTATTA-TAAGCT
1 ATGTAAGTTATGTA--TTA--AGTAAATT
41657003 ATGTAAGTTATTATGTAAGTTAAGATATAATAT
1 ATGTAAG---TTATGT-A-TTAAG-TA-AAT-T
*
41657036 ATGT-TGATTATGTATTAAGTAAATT
1 ATGTAAG-TTATGTATTAAGTAAATT
* * * *
41657061 ATGTAAGTTATGGAGTATGTAAGTT
1 ATGTAAGTTATGTATTAAGTAAATT
* **
41657086 ATATAAGTTATGTAAGTTATA-TAAGCT
1 ATGTAAGTTATGT-A-TTA-AGTAAATT
41657113 ATGTAAGTTAT-TATGTAAGTAA
1 ATGTAAGTTATGTAT-TAAGTAA
41657135 TGTATTAAAT
Statistics
Matches: 170, Mismatches: 20, Indels: 48
0.71 0.08 0.20
Matches are distributed among these distances:
24 4 0.02
25 67 0.39
26 8 0.05
27 24 0.14
28 20 0.12
29 18 0.11
30 9 0.05
31 12 0.07
32 3 0.02
33 5 0.03
ACGTcount: A:0.38, C:0.01, G:0.18, T:0.43
Consensus pattern (25 bp):
ATGTAAGTTATGTATTAAGTAAATT
Found at i:41656931 original size:9 final size:9
Alignment explanation
Indices: 41656896--41657259 Score: 186
Period size: 9 Copynumber: 40.6 Consensus size: 9
41656886 ATTTTTCTCA
41656896 ATGTAAGTT
1 ATGTAAGTT
41656905 ATGT-A-TT
1 ATGTAAGTT
* *
41656912 AAGTAAATT
1 ATGTAAGTT
41656921 ATGTAAGTT
1 ATGTAAGTT
41656930 ATGTATA-TAGT
1 ATGTA-AGT--T
** *
41656941 ATAAAAGAT
1 ATGTAAGTT
41656950 ATGTAAGTT
1 ATGTAAGTT
41656959 ATGT-A-TT
1 ATGTAAGTT
41656966 ATGTAAGTT
1 ATGTAAGTT
41656975 ATGTAAGTT
1 ATGTAAGTT
*
41656984 ATGTAGGTT
1 ATGTAAGTT
* *
41656993 ATTATAAGCT
1 A-TGTAAGTT
41657003 ATGTAAGTTATT
1 ATGTAAG---TT
41657015 ATGTAAGTT
1 ATGTAAGTT
* *
41657024 AAGATATAATAT
1 ATG-TA-AGT-T
*
41657036 ATGT-TGATT
1 ATGTAAG-TT
41657045 ATGT-A-TT
1 ATGTAAGTT
* *
41657052 AAGTAAATT
1 ATGTAAGTT
41657061 ATGTAAGTT
1 ATGTAAGTT
*
41657070 ATG-GAG-T
1 ATGTAAGTT
41657077 ATGTAAGTT
1 ATGTAAGTT
*
41657086 ATATAAGTT
1 ATGTAAGTT
41657095 ATGTAAGTT
1 ATGTAAGTT
* *
41657104 ATATAAGCT
1 ATGTAAGTT
41657113 ATGTAAGTTATT
1 ATGTAAG---TT
*
41657125 ATGTAAGTA
1 ATGTAAGTT
41657134 ATGT-A-TT
1 ATGTAAGTT
**
41657141 AAATAAGTT
1 ATGTAAGTT
*
41657150 ATGT-ATTT
1 ATGTAAGTT
*
41657158 ATTTAAGTT
1 ATGTAAGTT
41657167 ATGT-A-TT
1 ATGTAAGTT
41657174 ATGTAAGTT
1 ATGTAAGTT
* *
41657183 ATATAAGCT
1 ATGTAAGTT
*
41657192 ATGTACCATTT
1 ATGTA--AGTT
41657203 AT-TAAGTT
1 ATGTAAGTT
*
41657211 ATGTATG-T
1 ATGTAAGTT
* *
41657219 ATGTGACTT
1 ATGTAAGTT
*
41657228 TTGTAAGTT
1 ATGTAAGTT
*
41657237 ATGTGAGTT
1 ATGTAAGTT
*
41657246 ATGTAAATT
1 ATGTAAGTT
41657255 ATGTA
1 ATGTA
41657260 TTAAATTAAA
Statistics
Matches: 264, Mismatches: 59, Indels: 64
0.68 0.15 0.17
Matches are distributed among these distances:
7 29 0.11
8 29 0.11
9 163 0.62
10 13 0.05
11 11 0.04
12 19 0.07
ACGTcount: A:0.36, C:0.02, G:0.18, T:0.45
Consensus pattern (9 bp):
ATGTAAGTT
Found at i:41656955 original size:29 final size:25
Alignment explanation
Indices: 41656896--41657196 Score: 125
Period size: 25 Copynumber: 11.2 Consensus size: 25
41656886 ATTTTTCTCA
41656896 ATGTAAGTTATGTATTA-AGTAA-ATT
1 ATGTAAGTTATGTATTATA-TAAGA-T
41656921 ATGTAAGTTATGTATATAGTATAAAAGAT
1 ATGTAAGTTATGTAT-TA-TAT--AAGAT
* *
41656950 ATGTAAGTTATGTATTATGTAAGTT
1 ATGTAAGTTATGTATTATATAAGAT
*
41656975 ATGTAAGTTATGTAGGTTATTATAAGCT
1 ATGTAAGTTATGTA--TTA-TATAAGAT
*
41657003 ATGTAAGTTATTATGTAAGTTAAGATATAATAT
1 ATGTAAG---TTATGT-A-TT---ATATAAGAT
*
41657036 ATGT-TGATTATGTATTA-AGTAA-ATT
1 ATGTAAG-TTATGTATTATA-TAAGA-T
* * * *
41657061 ATGTAAGTTATGGAGTATGTAAGTT
1 ATGTAAGTTATGTATTATATAAGAT
* *
41657086 ATATAAGTTATGTAAGTTATATAAGCT
1 ATGTAAGTTATGT-A-TTATATAAGAT
41657113 ATGTAAGTTAT-TATGTA-AGTAATGTATT
1 ATGTAAGTTATGTAT-TATA-TAA-G-A-T
** * *
41657141 AAATAAGTTATGTATTTATTTAAGTT
1 ATGTAAGTTATGTA-TTATATAAGAT
*
41657167 ATGT-A-TTATGTAAGTTATATAAGCT
1 ATGTAAGTTATGT-A-TTATATAAGAT
41657192 ATGTA
1 ATGTA
41657197 CCATTTATTA
Statistics
Matches: 215, Mismatches: 28, Indels: 65
0.70 0.09 0.21
Matches are distributed among these distances:
24 10 0.05
25 86 0.40
26 9 0.04
27 24 0.11
28 29 0.13
29 26 0.12
30 9 0.04
31 9 0.04
32 2 0.01
33 10 0.05
34 1 0.00
ACGTcount: A:0.38, C:0.01, G:0.18, T:0.44
Consensus pattern (25 bp):
ATGTAAGTTATGTATTATATAAGAT
Found at i:41657005 original size:19 final size:19
Alignment explanation
Indices: 41656965--41657016 Score: 70
Period size: 19 Copynumber: 2.8 Consensus size: 19
41656955 AGTTATGTAT
* *
41656965 TATGTAAGTTA-TGTAAGT
1 TATGTAAGTTATTATAAGC
*
41656983 TATGTAGGTTATTATAAGC
1 TATGTAAGTTATTATAAGC
41657002 TATGTAAGTTATTAT
1 TATGTAAGTTATTAT
41657017 GTAAGTTAAG
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
18 10 0.34
19 19 0.66
ACGTcount: A:0.33, C:0.02, G:0.19, T:0.46
Consensus pattern (19 bp):
TATGTAAGTTATTATAAGC
Found at i:41657166 original size:17 final size:16
Alignment explanation
Indices: 41656949--41657184 Score: 118
Period size: 16 Copynumber: 14.8 Consensus size: 16
41656939 GTATAAAAGA
41656949 TATGTAAGTTATGTAT
1 TATGTAAGTTATGTAT
41656965 TATGTAAGTTATGTAAGT
1 TATGTAAGTTATGT-A-T
*
41656983 TATGTAGGTTAT-TA-
1 TATGTAAGTTATGTAT
* * *
41656997 TAAGCTATG-TAAGTTAT
1 TATG-TAAGTTATG-TAT
*
41657014 TATGTAAGTTAAGATAT
1 TATGTAAGTTATG-TAT
* * *
41657031 AATATATGTTGAT-TAT
1 TATGTAAGTT-ATGTAT
*
41657047 GTAT-TAAG-TA--AAT
1 -TATGTAAGTTATGTAT
* *
41657060 TATGTAAGTTATGGAG
1 TATGTAAGTTATGTAT
*
41657076 TATGTAAGTTATATAAGT
1 TATGTAAGTTATGT-A-T
* *
41657094 TATGTAAGTTATATAAGC
1 TATGTAAGTTATGT-A-T
41657112 TATGTAAG---T-TAT
1 TATGTAAGTTATGTAT
*
41657124 TATGTAAGTAATGTAT
1 TATGTAAGTTATGTAT
**
41657140 TAAATAAGTTATGTATT
1 TATGTAAGTTATGTA-T
*
41657157 TATTTAAGTTATGTAT
1 TATGTAAGTTATGTAT
41657173 TATGTAAGTTAT
1 TATGTAAGTTAT
41657185 ATAAGCTATG
Statistics
Matches: 173, Mismatches: 27, Indels: 40
0.72 0.11 0.17
Matches are distributed among these distances:
12 11 0.06
13 7 0.04
14 9 0.05
15 6 0.03
16 66 0.38
17 36 0.21
18 38 0.22
ACGTcount: A:0.36, C:0.01, G:0.18, T:0.45
Consensus pattern (16 bp):
TATGTAAGTTATGTAT
Found at i:41659581 original size:115 final size:115
Alignment explanation
Indices: 41659375--41659613 Score: 415
Period size: 115 Copynumber: 2.1 Consensus size: 115
41659365 AAATATTTCT
*
41659375 GGCGTTTTTAAAATGCGTCACTAAAAGAAAACAACAAAACGGCACCGTCTTTGTTACAGTTAAAG
1 GGCGTTTTTAAAATGCGCCACTAAAAGAAAACAACAAAACGGCACCGTCTTTGTTACAGTTAAAG
* ** *
41659440 GAAATTTGTGACGTTTCTTCGTAAAACGCCGGTAATATATCACTTTTAGC
66 GAAATTTGCGACGTTTCTTCACAAAACGCCGGTAATATATCACCTTTAGC
*
41659490 GGCGTTTTTCAAATGCGCCACTAAAAGAAAACAACAAAACGGCACCGTCTTTGTTACAGTTAAAG
1 GGCGTTTTTAAAATGCGCCACTAAAAGAAAACAACAAAACGGCACCGTCTTTGTTACAGTTAAAG
*
41659555 GAAATTTGCGGCGTTTCTTCACAAAACGCCGGTAATATATCACCTTTAGC
66 GAAATTTGCGACGTTTCTTCACAAAACGCCGGTAATATATCACCTTTAGC
41659605 GGCGTTTTT
1 GGCGTTTTT
41659614 TCTGAAGCGC
Statistics
Matches: 117, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
115 117 1.00
ACGTcount: A:0.32, C:0.20, G:0.19, T:0.29
Consensus pattern (115 bp):
GGCGTTTTTAAAATGCGCCACTAAAAGAAAACAACAAAACGGCACCGTCTTTGTTACAGTTAAAG
GAAATTTGCGACGTTTCTTCACAAAACGCCGGTAATATATCACCTTTAGC
Found at i:41660100 original size:7 final size:6
Alignment explanation
Indices: 41660061--41660142 Score: 56
Period size: 7 Copynumber: 12.0 Consensus size: 6
41660051 CAATATTCCA
* *
41660061 TAAACC TTAAATCA TAAATCC TAAACCC CAAACC TAAAACTC TAAACTC
1 TAAACC -TAAA-CC TAAA-CC TAAA-CC TAAACC T-AAAC-C TAAAC-C
41660110 TAAACC GTAAACCC TAAACC GTAAACC TAAACC
1 TAAACC -TAAA-CC TAAACC -TAAACC TAAACC
41660143 ATATTTTTTG
Statistics
Matches: 64, Mismatches: 5, Indels: 13
0.78 0.06 0.16
Matches are distributed among these distances:
6 11 0.17
7 48 0.75
8 5 0.08
ACGTcount: A:0.46, C:0.32, G:0.02, T:0.20
Consensus pattern (6 bp):
TAAACC
Found at i:41660105 original size:21 final size:21
Alignment explanation
Indices: 41660080--41660140 Score: 70
Period size: 21 Copynumber: 2.9 Consensus size: 21
41660070 AATCATAAAT
*
41660080 CCTAAACCCCAAACCTAAAAC
1 CCTAAACCCTAAACCTAAAAC
* *
41660101 TCTAAACTCTAAACCGT-AAAC
1 CCTAAACCCTAAACC-TAAAAC
*
41660122 CCTAAACCGTAAACCTAAA
1 CCTAAACCCTAAACCTAAA
41660141 CCATATTTTT
Statistics
Matches: 32, Mismatches: 6, Indels: 4
0.76 0.14 0.10
Matches are distributed among these distances:
20 1 0.03
21 30 0.94
22 1 0.03
ACGTcount: A:0.46, C:0.34, G:0.03, T:0.16
Consensus pattern (21 bp):
CCTAAACCCTAAACCTAAAAC
Found at i:41660114 original size:14 final size:13
Alignment explanation
Indices: 41660061--41660142 Score: 67
Period size: 14 Copynumber: 5.9 Consensus size: 13
41660051 CAATATTCCA
* *
41660061 TAAACCTTAAATCA
1 TAAACC-TAAACCG
*
41660075 TAAATCCTAAACCC
1 TAAA-CCTAAACCG
*
41660089 CAAACCTAAAACTC-
1 TAAACCT-AAAC-CG
41660103 TAAACTCTAAACCG
1 TAAAC-CTAAACCG
41660117 TAAACCCTAAACCG
1 TAAA-CCTAAACCG
41660131 TAAACCTAAACC
1 TAAACCTAAACC
41660143 ATATTTTTTG
Statistics
Matches: 58, Mismatches: 4, Indels: 13
0.77 0.05 0.17
Matches are distributed among these distances:
13 12 0.21
14 40 0.69
15 6 0.10
ACGTcount: A:0.46, C:0.32, G:0.02, T:0.20
Consensus pattern (13 bp):
TAAACCTAAACCG
Found at i:41660310 original size:20 final size:21
Alignment explanation
Indices: 41660272--41660321 Score: 68
Period size: 20 Copynumber: 2.5 Consensus size: 21
41660262 TCTTCAATTT
41660272 CCAAACT-AAACCCTAAAACC
1 CCAAACTCAAACCCTAAAACC
* *
41660292 CTAAACTCAAA-CCTTAAACC
1 CCAAACTCAAACCCTAAAACC
41660312 CCAAACTCAA
1 CCAAACTCAA
41660322 TCTCTAACAC
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
20 23 0.88
21 3 0.12
ACGTcount: A:0.48, C:0.38, G:0.00, T:0.14
Consensus pattern (21 bp):
CCAAACTCAAACCCTAAAACC
Found at i:41660493 original size:7 final size:7
Alignment explanation
Indices: 41660460--41660522 Score: 56
Period size: 7 Copynumber: 8.9 Consensus size: 7
41660450 TGCGTTGAAA
41660460 CCCTAA-
1 CCCTAAC
*
41660466 CCATAAC
1 CCCTAAC
41660473 CCCTAAATC
1 CCCT-AA-C
41660482 CCCTAAC
1 CCCTAAC
41660489 CCCTAAC
1 CCCTAAC
*
41660496 CCCTAAA
1 CCCTAAC
* *
41660503 GCATAAC
1 CCCTAAC
*
41660510 ACCTAAC
1 CCCTAAC
41660517 CCCTAA
1 CCCTAA
41660523 ACTTTAAATC
Statistics
Matches: 45, Mismatches: 9, Indels: 5
0.76 0.15 0.08
Matches are distributed among these distances:
6 5 0.11
7 31 0.69
8 4 0.09
9 5 0.11
ACGTcount: A:0.37, C:0.46, G:0.02, T:0.16
Consensus pattern (7 bp):
CCCTAAC
Found at i:41661212 original size:72 final size:72
Alignment explanation
Indices: 41661119--41661271 Score: 200
Period size: 72 Copynumber: 2.1 Consensus size: 72
41661109 CGAAAGCTGA
* * *
41661119 GAAAACGACACCGTTTGGCTTAGGTTTTTTAGCGGCGCTTCACCAAAAACGCCGCTAAAT-CCCA
1 GAAAACGGCACCGTTTGGCTTAGGATTATTAGCGGCGCTTCACCAAAAACGCCGCTAAATCCCCA
41661183 AAAACTAC
66 AAAACT-C
* * * ** *
41661191 GGAAACGGCACCGTTTGGCTTAGGATTATTAGTGGCGCTTGATTAAAAACGTCGCTAAATCCCCA
1 GAAAACGGCACCGTTTGGCTTAGGATTATTAGCGGCGCTTCACCAAAAACGCCGCTAAATCCCCA
*
41661256 AAAGCTC
66 AAAACTC
41661263 GAAAACGGC
1 GAAAACGGC
41661272 GTCATTGGGC
Statistics
Matches: 69, Mismatches: 11, Indels: 2
0.84 0.13 0.02
Matches are distributed among these distances:
72 60 0.87
73 9 0.13
ACGTcount: A:0.31, C:0.25, G:0.22, T:0.22
Consensus pattern (72 bp):
GAAAACGGCACCGTTTGGCTTAGGATTATTAGCGGCGCTTCACCAAAAACGCCGCTAAATCCCCA
AAAACTC
Found at i:41661283 original size:72 final size:72
Alignment explanation
Indices: 41661119--41661300 Score: 172
Period size: 72 Copynumber: 2.6 Consensus size: 72
41661109 CGAAAGCTGA
* * * * *
41661119 GAAAACGACACCGTTTGGCTTAGGTTTTTTAGCGGCGCTTCACCAAAAACGCCGCTAAATCCCAA
1 GAAAACGGCACCATTGGGCTTAGGATTATTAGCGGCGCTTCACCAAAAACGCCGCTAAATCCCAA
41661184 AAACTAC
66 AAACTAC
* * * * * ** *
41661191 GGAAACGGCACCGTTTGGCTTAGGATTATTAGTGGCGCTTGATTAAAAACGTCGCTAAATCCCCA
1 GAAAACGGCACCATTGGGCTTAGGATTATTAGCGGCGCTTCACCAAAAACGCCGCTAAAT-CCCA
*
41661256 AAAGCT-C
65 AAAACTAC
** * *
41661263 GAAAACGGCGTCATTGGGCTTTGG-TT-TTTGCGGCGCTT
1 GAAAACGGCACCATTGGGCTTAGGATTATTAGCGGCGCTT
41661301 TCTGGAAAAC
Statistics
Matches: 91, Mismatches: 18, Indels: 4
0.81 0.16 0.04
Matches are distributed among these distances:
70 10 0.11
71 2 0.02
72 70 0.77
73 9 0.10
ACGTcount: A:0.27, C:0.24, G:0.24, T:0.26
Consensus pattern (72 bp):
GAAAACGGCACCATTGGGCTTAGGATTATTAGCGGCGCTTCACCAAAAACGCCGCTAAATCCCAA
AAACTAC
Found at i:41663652 original size:20 final size:20
Alignment explanation
Indices: 41663629--41663673 Score: 65
Period size: 20 Copynumber: 2.2 Consensus size: 20
41663619 ATTTATTTAT
41663629 TAAAATAATAAT-TCAATAAA
1 TAAAATAATAATCT-AATAAA
*
41663649 TAAAATAATAATCTTATAAA
1 TAAAATAATAATCTAATAAA
41663669 TAAAA
1 TAAAA
41663674 CTTTAAGCGA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 22 0.96
21 1 0.04
ACGTcount: A:0.64, C:0.04, G:0.00, T:0.31
Consensus pattern (20 bp):
TAAAATAATAATCTAATAAA
Found at i:41676137 original size:21 final size:21
Alignment explanation
Indices: 41676098--41676138 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
41676088 CTATTAAAGC
**
41676098 CTCGAGACAAGTGGTCTTTGT
1 CTCGAGACAAGTGACCTTTGT
*
41676119 CTCGAGACAGGTGACCTTTG
1 CTCGAGACAAGTGACCTTTG
41676139 AAGCTAAATT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.20, C:0.22, G:0.29, T:0.29
Consensus pattern (21 bp):
CTCGAGACAAGTGACCTTTGT
Found at i:41677313 original size:28 final size:27
Alignment explanation
Indices: 41677267--41677319 Score: 70
Period size: 28 Copynumber: 1.9 Consensus size: 27
41677257 CGAGTTTGTC
*
41677267 TTTTTTTTAATGTGATATTTGTATTAA
1 TTTTTTTTAATGTGATATTTATATTAA
* *
41677294 TTTTTATTTAATTTGGTATTTATATT
1 TTTTT-TTTAATGTGATATTTATATT
41677320 TGACAAGTAT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
27 5 0.23
28 17 0.77
ACGTcount: A:0.25, C:0.00, G:0.09, T:0.66
Consensus pattern (27 bp):
TTTTTTTTAATGTGATATTTATATTAA
Found at i:41677655 original size:2 final size:2
Alignment explanation
Indices: 41677648--41677702 Score: 85
Period size: 2 Copynumber: 27.5 Consensus size: 2
41677638 AATCAAAAGC
*
41677648 TA TA TA TA TA GTA TA GA TA -A TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA -TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
41677690 TA TA TA TA TA TA T
1 TA TA TA TA TA TA T
41677703 CATTGGCTTT
Statistics
Matches: 49, Mismatches: 2, Indels: 4
0.89 0.04 0.07
Matches are distributed among these distances:
1 1 0.02
2 46 0.94
3 2 0.04
ACGTcount: A:0.49, C:0.00, G:0.04, T:0.47
Consensus pattern (2 bp):
TA
Found at i:41678413 original size:2 final size:2
Alignment explanation
Indices: 41678406--41678441 Score: 63
Period size: 2 Copynumber: 18.0 Consensus size: 2
41678396 ATCTGAACTT
*
41678406 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TT TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
41678442 ATGTGGCATG
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (2 bp):
TA
Found at i:41724895 original size:65 final size:63
Alignment explanation
Indices: 41724822--41725104 Score: 228
Period size: 65 Copynumber: 4.4 Consensus size: 63
41724812 CTTTGAAGAA
* * *
41724822 AACTTAGATAGCCCATTTCTTTAAAGCGGTTGTATCTCTTTAAGGTAATGCATTTCTTGAAAGTG
1 AACTTAGATAACACATTTCTTTAAAGTGGTT-TA-CTCTTTAAGGTAATGCATTTCTTGAAAGTG
* *** * *
41724887 AAATTAGATATA-ACATCAGTTTAAAGTGGTTTTAC-CTTTAAAGTAATGCACTTCTTGAAAGTG
1 AACTTAGATA-ACACATTTCTTTAAAGTGG-TTTACTCTTTAAGGTAATGCATTTCTTGAAAGTG
* * ** *
41724950 AACTTAGATAACACACTTCTTTAAAGTGGCTTTACCTTTTTAAGGTAACACATATCTTGAAAGTG
1 AACTTAGATAACACATTTCTTTAAAGTGG-TTTA-CTCTTTAAGGTAATGCATTTCTTGAAAGTG
** * ** * *** **
41725015 AACTTAGATATTACACTTCTTTAAAGTGGAACTACCTTTTTAAGGTAATATGTTTCTTGAAAGCA
1 AACTTAGATAACACATTTCTTTAAAGTGG-TTTA-CTCTTTAAGGTAATGCATTTCTTGAAAGTG
** *
41725080 AACTTAGATATTACACTTCTTTAAA
1 AACTTAGATAACACATTTCTTTAAA
41725105 AGAGTTAAAG
Statistics
Matches: 181, Mismatches: 32, Indels: 10
0.81 0.14 0.04
Matches are distributed among these distances:
62 1 0.01
63 52 0.29
64 2 0.01
65 124 0.69
66 2 0.01
ACGTcount: A:0.34, C:0.14, G:0.14, T:0.37
Consensus pattern (63 bp):
AACTTAGATAACACATTTCTTTAAAGTGGTTTACTCTTTAAGGTAATGCATTTCTTGAAAGTG
Found at i:41724942 original size:63 final size:63
Alignment explanation
Indices: 41724839--41725043 Score: 215
Period size: 63 Copynumber: 3.2 Consensus size: 63
41724829 ATAGCCCATT
* * * *
41724839 TCTTTAAAGCGGTTGTATCTCTTTAAGGTAATGCATTTCTTGAAAGTGAAATTAGATATA-ACA-
1 TCTTTAAAGTGGTTTTA-C-CTTTAAGGTAATGCACTTCTTGAAAGTGAACTTAGATATACACAC
*
41724902 TCAGTTTAAAGTGGTTTTACCTTTAAAGTAATGCACTTCTTGAAAGTGAACTTAGATA-ACACAC
1 TC--TTTAAAGTGGTTTTACCTTTAAGGTAATGCACTTCTTGAAAGTGAACTTAGATATACACAC
*
41724966 TTCTTTAAAGTGGCTTTACCTTTTTAAGGTAA--CACATATCTTGAAAGTGAACTTAGATATTAC
1 -TCTTTAAAGTGGTTTTACC--TTTAAGGTAATGCAC-T-TCTTGAAAGTGAACTTAGATA-TAC
*
41725029 AC-T
60 ACAC
41725032 TCTTTAAAGTGG
1 TCTTTAAAGTGG
41725044 AACTACCTTT
Statistics
Matches: 123, Mismatches: 8, Indels: 20
0.81 0.05 0.13
Matches are distributed among these distances:
62 1 0.01
63 59 0.48
64 2 0.02
65 57 0.46
67 4 0.03
ACGTcount: A:0.33, C:0.14, G:0.16, T:0.38
Consensus pattern (63 bp):
TCTTTAAAGTGGTTTTACCTTTAAGGTAATGCACTTCTTGAAAGTGAACTTAGATATACACAC
Found at i:41725051 original size:128 final size:128
Alignment explanation
Indices: 41724821--41725104 Score: 295
Period size: 128 Copynumber: 2.2 Consensus size: 128
41724811 TCTTTGAAGA
* * * * ** *
41724821 AAACTTAGATAGCCCATTTCTTTAAAGCGGTTGTATCTCTTTAAGGTAATGCATTTCTTGAAAGT
1 AAACTTAGATAACACACTTCTTTAAAGCGGTTGTACCTCTTTAAGGTAACACATATCTTGAAAGT
*** * *
41724886 GAAATTAGATATAACATCAGTTTAAAGTGGTTTTACC-TTTAAAGTAATGCACTTCTTGAAAGT
66 GAAATTAGATATAACATCA-TTTAAAGTGGAACTACCTTTTAAAGTAATACACTTCTTGAAAGC
* * *
41724949 GAACTTAGATAACACACTTCTTTAAAGTGGCTT-TACCTTTTTAAGGTAACACATATCTTGAAAG
1 AAACTTAGATAACACACTTCTTTAAAGCGG-TTGTACCTCTTTAAGGTAACACATATCTTGAAAG
* * * ***
41725013 TGAACTTAGATATTACACTTC-TTTAAAGTGGAACTACCTTTTTAAGGTAATATGTTTCTTGAAA
65 TGAAATTAGATA-TA-ACATCATTTAAAGTGGAACTACC-TTTTAAAGTAATACACTTCTTGAAA
41725077 GC
127 GC
**
41725079 AAACTTAGATATTACACTTCTTTAAA
1 AAACTTAGATAACACACTTCTTTAAA
41725105 AGAGTTAAAG
Statistics
Matches: 127, Mismatches: 24, Indels: 8
0.80 0.15 0.05
Matches are distributed among these distances:
128 76 0.60
129 4 0.03
130 47 0.37
ACGTcount: A:0.34, C:0.14, G:0.14, T:0.37
Consensus pattern (128 bp):
AAACTTAGATAACACACTTCTTTAAAGCGGTTGTACCTCTTTAAGGTAACACATATCTTGAAAGT
GAAATTAGATATAACATCATTTAAAGTGGAACTACCTTTTAAAGTAATACACTTCTTGAAAGC
Found at i:41729533 original size:44 final size:44
Alignment explanation
Indices: 41729435--41729522 Score: 176
Period size: 44 Copynumber: 2.0 Consensus size: 44
41729425 TGTGTGTTTG
41729435 AATAGAAATGAATGGAATGAATAGGAAAAGTGAAATGGGAAACA
1 AATAGAAATGAATGGAATGAATAGGAAAAGTGAAATGGGAAACA
41729479 AATAGAAATGAATGGAATGAATAGGAAAAGTGAAATGGGAAACA
1 AATAGAAATGAATGGAATGAATAGGAAAAGTGAAATGGGAAACA
41729523 TTCATGAATG
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
44 44 1.00
ACGTcount: A:0.55, C:0.02, G:0.27, T:0.16
Consensus pattern (44 bp):
AATAGAAATGAATGGAATGAATAGGAAAAGTGAAATGGGAAACA
Found at i:41729830 original size:27 final size:26
Alignment explanation
Indices: 41729776--41729829 Score: 81
Period size: 26 Copynumber: 2.1 Consensus size: 26
41729766 ATTTTCTCAG
* *
41729776 AATTTTATCAAGGGAAAAATTGTCAA
1 AATTTTACCAAGGGAAAAATCGTCAA
*
41729802 AATTTTACCAAGGGTAAAATCGTCAA
1 AATTTTACCAAGGGAAAAATCGTCAA
41729828 AA
1 AA
41729830 AAACTTTGGG
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.46, C:0.11, G:0.15, T:0.28
Consensus pattern (26 bp):
AATTTTACCAAGGGAAAAATCGTCAA
Found at i:41730294 original size:20 final size:21
Alignment explanation
Indices: 41730271--41730317 Score: 78
Period size: 20 Copynumber: 2.2 Consensus size: 21
41730261 ATAAGAAGTT
41730271 TTGTAATAAGAAA-ACATGTG
1 TTGTAATAAGAAACACATGTG
41730291 TTGTAATAAGAAATCACATGTG
1 TTGTAATAAGAAA-CACATGTG
41730313 TTGTA
1 TTGTA
41730318 TTGTTCCATT
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
20 13 0.52
22 12 0.48
ACGTcount: A:0.40, C:0.06, G:0.19, T:0.34
Consensus pattern (21 bp):
TTGTAATAAGAAACACATGTG
Found at i:41733270 original size:101 final size:101
Alignment explanation
Indices: 41733151--41733377 Score: 275
Period size: 101 Copynumber: 2.2 Consensus size: 101
41733141 TGTGGCATGG
* * *
41733151 ACTATGTGTAGGCCACTATGTGAAAGTGAGAG-TGAT-GGTCACATGTGTAGTACTATGTGCAGG
1 ACTATGTGCAGGCTACTATGTGAAAG-GAGAGCT--TCGATCACATGTGTAGTACTATGTGCAGG
*
41733214 CTACTACGTGTACCAGA-A-TGATAGGTCGCATGTGTAGT
63 CTACTACGTGTACCAGATAGTGAT-GGTCACATGTGTAGT
** * *
41733252 ACTATGTGCAGGCTACTATGCCT-ACCGGATAGCTTCGATCACGTGTGTAGTACTATGTGCAGGC
1 ACTATGTGCAGGCTACTATG--TGAAAGGAGAGCTTCGATCACATGTGTAGTACTATGTGCAGGC
* *
41733316 TACTACGTGTATCGGATAGTGATGGTCACATGTGTAGT
64 TACTACGTGTACCAGATAGTGATGGTCACATGTGTAGT
41733354 ACTATGTGCAGGCTACTATGTGAA
1 ACTATGTGCAGGCTACTATGTGAA
41733378 CCGATATCAT
Statistics
Matches: 108, Mismatches: 11, Indels: 14
0.81 0.08 0.11
Matches are distributed among these distances:
100 2 0.02
101 63 0.58
102 38 0.35
103 5 0.05
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (101 bp):
ACTATGTGCAGGCTACTATGTGAAAGGAGAGCTTCGATCACATGTGTAGTACTATGTGCAGGCTA
CTACGTGTACCAGATAGTGATGGTCACATGTGTAGT
Found at i:41733319 original size:51 final size:50
Alignment explanation
Indices: 41733189--41733373 Score: 196
Period size: 51 Copynumber: 3.7 Consensus size: 50
41733179 AGAGTGATGG
* ** * *
41733189 TCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCAGA-A-TGATAGG
1 TCACATGTGTAGTACTATGTGCAGGCTACTATGCCTACCGGATAGT-AT-GA
*
41733239 TCGCATGTGTAGTACTATGTGCAGGCTACTATGCCTACCGGATAGCT-TCGA
1 TCACATGTGTAGTACTATGTGCAGGCTACTATGCCTACCGGATAG-TAT-GA
* * ** * *
41733290 TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTATCGGATAGTGATGG
1 TCACATGTGTAGTACTATGTGCAGGCTACTATGCCTACCGGATAGT-ATGA
41733341 TCACATGTGTAGTACTATGTGCAGGCTACTATG
1 TCACATGTGTAGTACTATGTGCAGGCTACTATG
41733374 TGAACCGATA
Statistics
Matches: 114, Mismatches: 16, Indels: 9
0.82 0.12 0.06
Matches are distributed among these distances:
50 38 0.33
51 74 0.65
52 1 0.01
53 1 0.01
ACGTcount: A:0.24, C:0.19, G:0.27, T:0.30
Consensus pattern (50 bp):
TCACATGTGTAGTACTATGTGCAGGCTACTATGCCTACCGGATAGTATGA
Found at i:41733375 original size:26 final size:26
Alignment explanation
Indices: 41733295--41733375 Score: 73
Period size: 26 Copynumber: 3.2 Consensus size: 26
41733285 TTCGATCACG
41733295 TGTGTAGTACTATGTGCAGGCTACTA
1 TGTGTAGTACTATGTGCAGGCTACTA
* *
41733321 CGTGTA-T-CGGATAGTG-ATGG-TCAC-A
1 TGTGTAGTAC-TAT-GTGCA-GGCT-ACTA
41733346 TGTGTAGTACTATGTGCAGGCTACTA
1 TGTGTAGTACTATGTGCAGGCTACTA
41733372 TGTG
1 TGTG
41733376 AACCGATATC
Statistics
Matches: 42, Mismatches: 4, Indels: 18
0.66 0.06 0.28
Matches are distributed among these distances:
24 1 0.02
25 18 0.43
26 22 0.52
27 1 0.02
ACGTcount: A:0.22, C:0.15, G:0.30, T:0.33
Consensus pattern (26 bp):
TGTGTAGTACTATGTGCAGGCTACTA
Found at i:41733458 original size:46 final size:44
Alignment explanation
Indices: 41733380--41733469 Score: 110
Period size: 46 Copynumber: 2.0 Consensus size: 44
41733370 TATGTGAACC
*
41733380 GATATCATTAATTATAAGGTGGTTGCTATGTGCT-AATCCCACCG
1 GATATCATTAATTAAAAGGTGGTTGCTATGTGCTGAAT-CCACCG
* * *
41733424 GATATCATTGATTACAAAGGGTGGTTGTTGTGTGCTGAATCCACCG
1 GATATCATTAATTA-AAA-GGTGGTTGCTATGTGCTGAATCCACCG
41733470 TGTATATGTT
Statistics
Matches: 39, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
44 13 0.33
45 2 0.05
46 21 0.54
47 3 0.08
ACGTcount: A:0.26, C:0.17, G:0.24, T:0.33
Consensus pattern (44 bp):
GATATCATTAATTAAAAGGTGGTTGCTATGTGCTGAATCCACCG
Found at i:41733618 original size:16 final size:16
Alignment explanation
Indices: 41733597--41733628 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
41733587 TGATTGAAAG
*
41733597 TGAAAAAGTGAAATTA
1 TGAAAAAGTAAAATTA
41733613 TGAAAAAGTAAAATTA
1 TGAAAAAGTAAAATTA
41733629 GCAAGAAAAC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.59, C:0.00, G:0.16, T:0.25
Consensus pattern (16 bp):
TGAAAAAGTAAAATTA
Found at i:41744745 original size:26 final size:26
Alignment explanation
Indices: 41744704--41744765 Score: 88
Period size: 26 Copynumber: 2.4 Consensus size: 26
41744694 AGGGTGTAGT
* *
41744704 AGGCTTTATGCCAGTGTATATCTAGC
1 AGGCTTTGTGCCAGTGCATATCTAGC
* *
41744730 AGGCTTTGTGCTAGTGCATATTTAGC
1 AGGCTTTGTGCCAGTGCATATCTAGC
41744756 AGGCTTTGTG
1 AGGCTTTGTG
41744766 TCGGTGTATA
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 32 1.00
ACGTcount: A:0.19, C:0.16, G:0.27, T:0.37
Consensus pattern (26 bp):
AGGCTTTGTGCCAGTGCATATCTAGC
Found at i:41752185 original size:26 final size:26
Alignment explanation
Indices: 41752156--41752232 Score: 93
Period size: 26 Copynumber: 3.0 Consensus size: 26
41752146 GGCGTAATAG
*
41752156 GCTTTATGTTGGTGTATATTTAGCAA
1 GCTTTGTGTTGGTGTATATTTAGCAA
* *
41752182 GCTTTGT-TTCGGTGTATATTTAGTAG
1 GCTTTGTGTT-GGTGTATATTTAGCAA
**
41752208 GCTTTGTGCCGGTGTATATTTAGCA
1 GCTTTGTGTTGGTGTATATTTAGCA
41752233 GGCATTAGTT
Statistics
Matches: 43, Mismatches: 6, Indels: 4
0.81 0.11 0.08
Matches are distributed among these distances:
25 2 0.05
26 41 0.95
ACGTcount: A:0.18, C:0.10, G:0.26, T:0.45
Consensus pattern (26 bp):
GCTTTGTGTTGGTGTATATTTAGCAA
Found at i:41752235 original size:26 final size:26
Alignment explanation
Indices: 41752166--41752235 Score: 104
Period size: 26 Copynumber: 2.7 Consensus size: 26
41752156 GCTTTATGTT
* **
41752166 GGTGTATATTTAGCAAGCTTTGTTTC
1 GGTGTATATTTAGCAGGCTTTGTGCC
*
41752192 GGTGTATATTTAGTAGGCTTTGTGCC
1 GGTGTATATTTAGCAGGCTTTGTGCC
41752218 GGTGTATATTTAGCAGGC
1 GGTGTATATTTAGCAGGC
41752236 ATTAGTTGTC
Statistics
Matches: 39, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 39 1.00
ACGTcount: A:0.19, C:0.11, G:0.29, T:0.41
Consensus pattern (26 bp):
GGTGTATATTTAGCAGGCTTTGTGCC
Found at i:41769106 original size:35 final size:35
Alignment explanation
Indices: 41769075--41769326 Score: 315
Period size: 35 Copynumber: 7.2 Consensus size: 35
41769065 GACGTGTTTT
* *
41769075 GGTTGGATTAGCTCTTACGAGCATTGGCGTGTTTC
1 GGTTGGATTAGCTCTTATGAGCATTGGCGTGTTAC
* *
41769110 AGTTGGATTAGCTCTTATGAGAATTGGCGTGTTAC
1 GGTTGGATTAGCTCTTATGAGCATTGGCGTGTTAC
* * * *
41769145 GGTTGGATTAGCTCTTATGATCACTGGTGTGTTTC
1 GGTTGGATTAGCTCTTATGAGCATTGGCGTGTTAC
** *
41769180 GGTTGGATTAGCTCTTATGAGCATTTCCATGTTAC
1 GGTTGGATTAGCTCTTATGAGCATTGGCGTGTTAC
*
41769215 GGTTGGATTAGCTCTTATGAGCATTGGTGTGTTAC
1 GGTTGGATTAGCTCTTATGAGCATTGGCGTGTTAC
* * * * *
41769250 GGTTGGATTAGCTCCTATGAGCACTAGCATGTTTC
1 GGTTGGATTAGCTCTTATGAGCATTGGCGTGTTAC
* ** *
41769285 GGTTGGATTAGCTCTTATGAACATCAGCGTGTTAT
1 GGTTGGATTAGCTCTTATGAGCATTGGCGTGTTAC
41769320 GGTTGGA
1 GGTTGGA
41769327 CTGACGATGT
Statistics
Matches: 183, Mismatches: 34, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
35 183 1.00
ACGTcount: A:0.19, C:0.15, G:0.29, T:0.38
Consensus pattern (35 bp):
GGTTGGATTAGCTCTTATGAGCATTGGCGTGTTAC
Found at i:41769318 original size:105 final size:105
Alignment explanation
Indices: 41769069--41769326 Score: 354
Period size: 105 Copynumber: 2.5 Consensus size: 105
41769059 CTGTCTGACG
* * * * *
41769069 TGTTTTGGTTGGATTAGCTCTTACGAGCATTGGCGTGTTTCAGTTGGATTAGCTCTTATGAGAAT
1 TGTTTCGGTTGGATTAGCTCTTATGAGCATTAGCGTGTTACGGTTGGATTAGCTCTTATGAGAAT
* * * **
41769134 TGGCGTGTTACGGTTGGATTAGCTCTTATGATCACTGGTG
66 TGGCGTGTTACGGTTGGATTAGCTCCTATGAGCACTAGCA
** * *
41769174 TGTTTCGGTTGGATTAGCTCTTATGAGCATTTCCATGTTACGGTTGGATTAGCTCTTATGAGCAT
1 TGTTTCGGTTGGATTAGCTCTTATGAGCATTAGCGTGTTACGGTTGGATTAGCTCTTATGAGAAT
*
41769239 TGGTGTGTTACGGTTGGATTAGCTCCTATGAGCACTAGCA
66 TGGCGTGTTACGGTTGGATTAGCTCCTATGAGCACTAGCA
* * *
41769279 TGTTTCGGTTGGATTAGCTCTTATGAACATCAGCGTGTTATGGTTGGA
1 TGTTTCGGTTGGATTAGCTCTTATGAGCATTAGCGTGTTACGGTTGGA
41769327 CTGACGATGT
Statistics
Matches: 133, Mismatches: 20, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
105 133 1.00
ACGTcount: A:0.18, C:0.14, G:0.28, T:0.39
Consensus pattern (105 bp):
TGTTTCGGTTGGATTAGCTCTTATGAGCATTAGCGTGTTACGGTTGGATTAGCTCTTATGAGAAT
TGGCGTGTTACGGTTGGATTAGCTCCTATGAGCACTAGCA
Found at i:41770181 original size:13 final size:13
Alignment explanation
Indices: 41770163--41770187 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
41770153 TGAATGATGC
41770163 TTTGATGATATAT
1 TTTGATGATATAT
41770176 TTTGATGATATA
1 TTTGATGATATA
41770188 AATGTGGTAC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.00, G:0.16, T:0.52
Consensus pattern (13 bp):
TTTGATGATATAT
Found at i:41773094 original size:50 final size:50
Alignment explanation
Indices: 41773019--41773124 Score: 142
Period size: 50 Copynumber: 2.1 Consensus size: 50
41773009 TATCGAGGTT
* * * *
41773019 ATGAGAGGTCCCACATAAGACCATGTCTGGGACATGGCGTTGGCACCGAG
1 ATGAGAGGTCCCACATAAGACCATGTCTAGGACATGACATGGGCACCGAG
* *
41773069 ATGAGAGGTCCGC-CGTAAGACCATGTCTAGGACATGACATGGGCACCGAT
1 ATGAGAGGTCC-CACATAAGACCATGTCTAGGACATGACATGGGCACCGAG
41773119 ATGAGA
1 ATGAGA
41773125 ACTCCCATGT
Statistics
Matches: 49, Mismatches: 6, Indels: 2
0.86 0.11 0.04
Matches are distributed among these distances:
50 48 0.98
51 1 0.02
ACGTcount: A:0.28, C:0.23, G:0.31, T:0.18
Consensus pattern (50 bp):
ATGAGAGGTCCCACATAAGACCATGTCTAGGACATGACATGGGCACCGAG
Found at i:41773440 original size:20 final size:20
Alignment explanation
Indices: 41773415--41773453 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 20
41773405 TGAATTATTT
41773415 AAGTAAGCA-AGTAAGTAAAC
1 AAGTAAG-AGAGTAAGTAAAC
41773435 AAGTAAGAGAGTAAGTAAA
1 AAGTAAGAGAGTAAGTAAA
41773454 GAAGAAAGTA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 1 0.06
20 17 0.94
ACGTcount: A:0.56, C:0.05, G:0.23, T:0.15
Consensus pattern (20 bp):
AAGTAAGAGAGTAAGTAAAC
Found at i:41781928 original size:7 final size:7
Alignment explanation
Indices: 41781918--41781951 Score: 52
Period size: 7 Copynumber: 4.9 Consensus size: 7
41781908 AAAATGCAAA
41781918 AAAAAAC
1 AAAAAAC
41781925 AAAAAAC
1 AAAAAAC
41781932 AAAAAA-
1 AAAAAAC
41781938 ACAAAAAC
1 A-AAAAAC
41781946 AAAAAA
1 AAAAAA
41781952 AAGAGTGCCA
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
6 1 0.04
7 23 0.92
8 1 0.04
ACGTcount: A:0.88, C:0.12, G:0.00, T:0.00
Consensus pattern (7 bp):
AAAAAAC
Found at i:41781928 original size:8 final size:8
Alignment explanation
Indices: 41781917--41781952 Score: 51
Period size: 8 Copynumber: 4.9 Consensus size: 8
41781907 TAAAATGCAA
41781917 AAAAAAAC
1 AAAAAAAC
41781925 -AAAAAAC
1 AAAAAAAC
41781932 AAAAAAAC
1 AAAAAAAC
41781940 --AAAAAC
1 AAAAAAAC
41781946 AAAAAAA
1 AAAAAAA
41781953 AGAGTGCCAT
Statistics
Matches: 25, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
6 6 0.24
7 7 0.28
8 12 0.48
ACGTcount: A:0.89, C:0.11, G:0.00, T:0.00
Consensus pattern (8 bp):
AAAAAAAC
Found at i:41781937 original size:15 final size:14
Alignment explanation
Indices: 41781917--41781952 Score: 63
Period size: 14 Copynumber: 2.5 Consensus size: 14
41781907 TAAAATGCAA
41781917 AAAAAAACAAAAAAC
1 AAAAAAAC-AAAAAC
41781932 AAAAAAACAAAAAC
1 AAAAAAACAAAAAC
41781946 AAAAAAA
1 AAAAAAA
41781953 AGAGTGCCAT
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 13 0.62
15 8 0.38
ACGTcount: A:0.89, C:0.11, G:0.00, T:0.00
Consensus pattern (14 bp):
AAAAAAACAAAAAC
Found at i:41781953 original size:15 final size:14
Alignment explanation
Indices: 41781915--41781953 Score: 60
Period size: 15 Copynumber: 2.6 Consensus size: 14
41781905 GATAAAATGC
41781915 AAAAAAAAACAAAA
1 AAAAAAAAACAAAA
41781929 AACAAAAAAACAAAA
1 AA-AAAAAAACAAAA
41781944 ACAAAAAAAA
1 A-AAAAAAAA
41781954 GAGTGCCATC
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
14 2 0.09
15 20 0.87
16 1 0.04
ACGTcount: A:0.90, C:0.10, G:0.00, T:0.00
Consensus pattern (14 bp):
AAAAAAAAACAAAA
Found at i:41784571 original size:25 final size:25
Alignment explanation
Indices: 41784537--41784593 Score: 71
Period size: 25 Copynumber: 2.3 Consensus size: 25
41784527 AATGTTACAT
*
41784537 TTTTTCATT-AATTTGACTCTTATAC
1 TTTTTAATTAAATTTGACTCTTA-AC
*
41784562 TTTTTAATTAAATTTGACTTTTAAC
1 TTTTTAATTAAATTTGACTCTTAAC
*
41784587 ATTTTAA
1 TTTTTAA
41784594 AAATAGTTAA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
25 16 0.57
26 12 0.43
ACGTcount: A:0.30, C:0.11, G:0.04, T:0.56
Consensus pattern (25 bp):
TTTTTAATTAAATTTGACTCTTAAC
Found at i:41785265 original size:5 final size:6
Alignment explanation
Indices: 41785236--41785273 Score: 58
Period size: 6 Copynumber: 6.3 Consensus size: 6
41785226 CAAACCAAAT
* *
41785236 AGAAAA AGAAAG CGAAAA AGAAAA AGAAAA AGAAAA AG
1 AGAAAA AGAAAA AGAAAA AGAAAA AGAAAA AGAAAA AG
41785274 CTTACCTCTC
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
6 28 1.00
ACGTcount: A:0.76, C:0.03, G:0.21, T:0.00
Consensus pattern (6 bp):
AGAAAA
Found at i:41787382 original size:15 final size:16
Alignment explanation
Indices: 41787362--41787391 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
41787352 ACAAAACACA
41787362 TTCTTTT-CATTTTTT
1 TTCTTTTGCATTTTTT
41787377 TTCTTTTGCATTTTT
1 TTCTTTTGCATTTTT
41787392 ATCTGATTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 7 0.50
16 7 0.50
ACGTcount: A:0.07, C:0.13, G:0.03, T:0.77
Consensus pattern (16 bp):
TTCTTTTGCATTTTTT
Found at i:41813165 original size:18 final size:18
Alignment explanation
Indices: 41813142--41813193 Score: 52
Period size: 18 Copynumber: 2.8 Consensus size: 18
41813132 TTAATAAATA
*
41813142 AATTAATTTAATTTTCCC
1 AATTAATTTAATTTTCAC
* *
41813160 AATTAAATT-ATTTTCAT
1 AATTAATTTAATTTTCAC
41813177 AATTCAATTATAATTTT
1 AATT-AATT-TAATTTT
41813194 GTTAAAGTAA
Statistics
Matches: 27, Mismatches: 4, Indels: 4
0.77 0.11 0.11
Matches are distributed among these distances:
17 10 0.37
18 11 0.41
19 1 0.04
20 5 0.19
ACGTcount: A:0.38, C:0.10, G:0.00, T:0.52
Consensus pattern (18 bp):
AATTAATTTAATTTTCAC
Found at i:41814101 original size:17 final size:20
Alignment explanation
Indices: 41814091--41814130 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
41814081 ATAAATAAAA
41814091 TAGAAAAATAAATCAAAGAT
1 TAGAAAAATAAATCAAAGAT
*
41814111 TAGAACAATAAA--AAAGAT
1 TAGAAAAATAAATCAAAGAT
41814129 TA
1 TA
41814131 TAAAGCAGAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 8 0.42
20 11 0.58
ACGTcount: A:0.65, C:0.05, G:0.10, T:0.20
Consensus pattern (20 bp):
TAGAAAAATAAATCAAAGAT
Found at i:41814334 original size:27 final size:28
Alignment explanation
Indices: 41814304--41814363 Score: 67
Period size: 26 Copynumber: 2.3 Consensus size: 28
41814294 TTGTTAAAAC
41814304 TCTTTTAAAAG-AAAACTC-AAGAGAAAT
1 TCTTTTAAAAGAAAAACTCAAAGAG-AAT
*
41814331 TC--TTGAAAGAAAAACTCAAAGAGAAT
1 TCTTTTAAAAGAAAAACTCAAAGAGAAT
41814357 T-TTTTAA
1 TCTTTTAA
41814364 TTCAAAAGAG
Statistics
Matches: 27, Mismatches: 2, Indels: 8
0.73 0.05 0.22
Matches are distributed among these distances:
25 6 0.22
26 11 0.41
27 10 0.37
ACGTcount: A:0.50, C:0.10, G:0.12, T:0.28
Consensus pattern (28 bp):
TCTTTTAAAAGAAAAACTCAAAGAGAAT
Found at i:41818088 original size:72 final size:72
Alignment explanation
Indices: 41817971--41818129 Score: 264
Period size: 72 Copynumber: 2.2 Consensus size: 72
41817961 ACAGGGTTGA
*
41817971 GACACACGCTCGTGTCTCAGGCCATGTAACTCTCTGACTTGGGTCACAAGCCCATGTGTGTTGCC
1 GACACACGCACGTGTCTCAGGCCATGTAACTCTCTGACTTGGGTCACAAGCCCATGTGTGTTGCC
41818036 CGTGTGT
66 CGTGTGT
* * * *
41818043 GACACACGCCCGTGTCTCAGGCCATGTAACTCTCTGACTTGGGTCACACGTCCATGTGTGTTTCC
1 GACACACGCACGTGTCTCAGGCCATGTAACTCTCTGACTTGGGTCACAAGCCCATGTGTGTTGCC
41818108 CGTGTGT
66 CGTGTGT
*
41818115 GACACAAGCACGTGT
1 GACACACGCACGTGT
41818130 GGCCAGGCCG
Statistics
Matches: 81, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
72 81 1.00
ACGTcount: A:0.18, C:0.30, G:0.26, T:0.27
Consensus pattern (72 bp):
GACACACGCACGTGTCTCAGGCCATGTAACTCTCTGACTTGGGTCACAAGCCCATGTGTGTTGCC
CGTGTGT
Found at i:41836828 original size:16 final size:16
Alignment explanation
Indices: 41836807--41836837 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
41836797 AAATTTGCTC
*
41836807 TATATACTTAATTAAA
1 TATATAATTAATTAAA
41836823 TATATAATTAATTAA
1 TATATAATTAATTAA
41836838 CTTAGATTTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.52, C:0.03, G:0.00, T:0.45
Consensus pattern (16 bp):
TATATAATTAATTAAA
Found at i:41838091 original size:9 final size:9
Alignment explanation
Indices: 41838077--41838162 Score: 120
Period size: 9 Copynumber: 9.4 Consensus size: 9
41838067 TTTGGTTAAA
41838077 AATTACCCG
1 AATTACCCG
41838086 AATTACCCG
1 AATTACCCG
41838095 AATTACCCG
1 AATTACCCG
41838104 AATTACCCG
1 AATTACCCG
*
41838113 AATTAACCG
1 AATTACCCG
*
41838122 AATTAACCG
1 AATTACCCG
41838131 AATTA-CCG
1 AATTACCCG
*
41838139 AAAAATACCCG
1 --AATTACCCG
41838150 AATTACCCG
1 AATTACCCG
41838159 AATT
1 AATT
41838163 TTTTTATTTT
Statistics
Matches: 71, Mismatches: 3, Indels: 6
0.89 0.04 0.08
Matches are distributed among these distances:
8 3 0.04
9 61 0.86
10 4 0.06
11 3 0.04
ACGTcount: A:0.40, C:0.28, G:0.10, T:0.22
Consensus pattern (9 bp):
AATTACCCG
Found at i:41838280 original size:40 final size:41
Alignment explanation
Indices: 41838235--41838329 Score: 120
Period size: 45 Copynumber: 2.2 Consensus size: 41
41838225 GACTTTAGTA
41838235 AATTGGGTTGT-CTTTTAGTTTTAGTTTTATTGGATTGGGT
1 AATTGGGTTGTACTTTTAGTTTTAGTTTTATTGGATTGGGT
* * *
41838275 AATTGGGTAAACTTTAGTTTTAGTTTTAGTTTTATTGGGTTGGGT
1 AATTGGGT----TGTACTTTTAGTTTTAGTTTTATTGGATTGGGT
41838320 AATTGGGTTG
1 AATTGGGTTG
41838330 GGTAATTGAG
Statistics
Matches: 46, Mismatches: 4, Indels: 9
0.78 0.07 0.15
Matches are distributed among these distances:
40 8 0.17
41 1 0.02
44 2 0.04
45 35 0.76
ACGTcount: A:0.18, C:0.02, G:0.28, T:0.52
Consensus pattern (41 bp):
AATTGGGTTGTACTTTTAGTTTTAGTTTTATTGGATTGGGT
Found at i:41838326 original size:13 final size:13
Alignment explanation
Indices: 41838308--41838337 Score: 60
Period size: 13 Copynumber: 2.3 Consensus size: 13
41838298 TTTTAGTTTT
41838308 ATTGGGTTGGGTA
1 ATTGGGTTGGGTA
41838321 ATTGGGTTGGGTA
1 ATTGGGTTGGGTA
41838334 ATTG
1 ATTG
41838338 AGTTTGGGCT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.17, C:0.00, G:0.43, T:0.40
Consensus pattern (13 bp):
ATTGGGTTGGGTA
Found at i:41842089 original size:18 final size:17
Alignment explanation
Indices: 41842068--41842120 Score: 70
Period size: 18 Copynumber: 2.9 Consensus size: 17
41842058 AAAATAAAAA
41842068 AATGTTTTGAAATTGAAT
1 AATGTTTTGAAA-TGAAT
*
41842086 AATGATTTGTAAATGAAT
1 AATGTTTTG-AAATGAAT
41842104 AATGTTTTGAAAATGAA
1 AATGTTTTG-AAATGAA
41842121 CGACACGATT
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
18 28 0.90
19 3 0.10
ACGTcount: A:0.43, C:0.00, G:0.17, T:0.40
Consensus pattern (17 bp):
AATGTTTTGAAATGAAT
Found at i:41848808 original size:13 final size:13
Alignment explanation
Indices: 41848790--41848814 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
41848780 GGTCTTTACG
41848790 AATTTTGATTTAA
1 AATTTTGATTTAA
41848803 AATTTTGATTTA
1 AATTTTGATTTA
41848815 TTACCTATTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.00, G:0.08, T:0.56
Consensus pattern (13 bp):
AATTTTGATTTAA
Found at i:41848979 original size:18 final size:18
Alignment explanation
Indices: 41848950--41848997 Score: 60
Period size: 18 Copynumber: 2.7 Consensus size: 18
41848940 ATAAAAACAT
*
41848950 TTTGAAATTGAATAACGA
1 TTTGAAAATGAATAACGA
* * *
41848968 TTTGCAAATGAATAATGT
1 TTTGAAAATGAATAACGA
41848986 TTTGAAAATGAA
1 TTTGAAAATGAA
41848998 CGACACGATT
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
18 25 1.00
ACGTcount: A:0.44, C:0.04, G:0.17, T:0.35
Consensus pattern (18 bp):
TTTGAAAATGAATAACGA
Found at i:41851927 original size:18 final size:19
Alignment explanation
Indices: 41851890--41851929 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 19
41851880 CTTCTTATGA
*
41851890 TTTGAATAAAAAATTGAAG
1 TTTGAATAAAAAATTCAAG
*
41851909 TTTGAA-AAAAATTTCAAG
1 TTTGAATAAAAAATTCAAG
41851927 TTT
1 TTT
41851930 ACTTACTAGT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
18 13 0.68
19 6 0.32
ACGTcount: A:0.47, C:0.03, G:0.12, T:0.38
Consensus pattern (19 bp):
TTTGAATAAAAAATTCAAG
Found at i:41852018 original size:17 final size:17
Alignment explanation
Indices: 41851962--41852090 Score: 134
Period size: 17 Copynumber: 7.6 Consensus size: 17
41851952 TATCTTTCTA
41851962 TGAACTTAAGCAAATTT
1 TGAACTTAAGCAAATTT
* *
41851979 TGAA-TTCAATCAAATCT
1 TGAACTT-AAGCAAATTT
*
41851996 TGAACTTAAGCATATTT
1 TGAACTTAAGCAAATTT
* *
41852013 TAAACTTAAGCAAATTC
1 TGAACTTAAGCAAATTT
* *
41852030 TGAACTTAAGTACATTT
1 TGAACTTAAGCAAATTT
**
41852047 TGGGCTTAAGCAAATTT
1 TGAACTTAAGCAAATTT
* *
41852064 TGAACTTAAGAAAATTA
1 TGAACTTAAGCAAATTT
*
41852081 TAAACTTAAG
1 TGAACTTAAG
41852091 TAGATTTCGA
Statistics
Matches: 89, Mismatches: 21, Indels: 4
0.78 0.18 0.04
Matches are distributed among these distances:
16 2 0.02
17 85 0.96
18 2 0.02
ACGTcount: A:0.41, C:0.12, G:0.12, T:0.35
Consensus pattern (17 bp):
TGAACTTAAGCAAATTT
Found at i:41852638 original size:138 final size:138
Alignment explanation
Indices: 41852398--41852872 Score: 567
Period size: 138 Copynumber: 3.4 Consensus size: 138
41852388 AGCTAGTAGT
* * * * *
41852398 ATAGGTCCACTAGCTATTTTTGAAGGTTTCAATCATAAATCGGCAAATCTTTATAACATCAGCTG
1 ATAGGTCCGCTAGCTATTTTTGGAGGTTGCAATCATAAAACGGCAAACCTTTATAACATCAGCTG
* * * * * * *
41852463 GGAGCGTATGTCCGCTAGTTGTGTTGGAGCTGTGAGCTTAACT-TCGCGAGCCCTTTGAATATCA
66 GGAGCGTAGGTCCGCTAGCTGTGTTAGAGTTGCGAGCTTAACTCT-GCGAGCTCTTAGAATATCA
41852527 ACTGGGAGC
130 ACTGGGAGC
* * * * * *
41852536 ATAGGTTCGTTAGTTATTTTTGGAGGTTGCAATCATAAAACAGTAAACCTTTATAACATCAGCCG
1 ATAGGTCCGCTAGCTATTTTTGGAGGTTGCAATCATAAAACGGCAAACCTTTATAACATCAGCTG
* *
41852601 GGAGCATAGGTCCGCTAGCTGTGTTAGAGTTGCGAGCTTAACTCTACGAGCTCTTAGAATATCAA
66 GGAGCGTAGGTCCGCTAGCTGTGTTAGAGTTGCGAGCTTAACTCTGCGAGCTCTTAGAATATCAA
*
41852666 CTAGGAGC
131 CTGGGAGC
* * * ** * * *
41852674 ATAGGCCCGGTAGCTATTTTTAGAGGTTGTGATCATAAACCGTCAAACCTTTATAACATCAACTG
1 ATAGGTCCGCTAGCTATTTTTGGAGGTTGCAATCATAAAACGGCAAACCTTTATAACATCAGCTG
* * * * *
41852739 AGAGTGTAGG-CCTGCTAGCTATGTTCGAGTTGCGAGCTTAACTCTGCAAGCTCTTAGAATATCA
66 GGAGCGTAGGTCC-GCTAGCTGTGTTAGAGTTGCGAGCTTAACTCTGCGAGCTCTTAGAATATCA
41852803 ACTGGGAGC
130 ACTGGGAGC
* ** * *
41852812 GTAGGTCCGCTAGCTATTTTTGGAGGTTGTGATCATAAACCGGCAAACCATTATAACATCA
1 ATAGGTCCGCTAGCTATTTTTGGAGGTTGCAATCATAAAACGGCAAACCTTTATAACATCA
41852873 AGTACAAACA
Statistics
Matches: 287, Mismatches: 48, Indels: 4
0.85 0.14 0.01
Matches are distributed among these distances:
137 2 0.01
138 284 0.99
139 1 0.00
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.30
Consensus pattern (138 bp):
ATAGGTCCGCTAGCTATTTTTGGAGGTTGCAATCATAAAACGGCAAACCTTTATAACATCAGCTG
GGAGCGTAGGTCCGCTAGCTGTGTTAGAGTTGCGAGCTTAACTCTGCGAGCTCTTAGAATATCAA
CTGGGAGC
Done.