Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr09 ID=Chr09-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 70713020
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 1142373 characters in sequence are not A, C, G, or T
File 124 of 226
Found at i:41852675 original size:68 final size:66
Alignment explanation
Indices: 41852601--41852828 Score: 201
Period size: 68 Copynumber: 3.3 Consensus size: 66
41852591 ACATCAGCCG
* *
41852601 GGAGCATAGGTCCGCTAGCTGTGTTAGAGTTGCGAGCTTAACTCTACGAGCTCTTAGAATATCAA
1 GGAGCATAGGTCCGCTAGCTATGTTAGAGTTGCGAGCTTAACTCT-CAAGCTCTTAGAATATCAA
41852666 CT
65 CT
* * * * * * * * *
41852668 AGGAGCATAGGCCCGGTAGCTATTTTTAGAGGTTGTGATCATAAAC-CGTCAAAC-CTTTATAAC
1 -GGAGCATAGGTCCGCTAGCTA-TGTTAGA-GTTGCGAGC-TTAACTC-TCAAGCTC-TTAGAAT
41852731 ATCAACT
60 ATCAACT
** *
41852738 GAGAGTGTAGG-CCTGCTAGCTATGTTCGAGTTGCGAGCTTAACTCTGCAAGCTCTTAGAATATC
1 G-GAGCATAGGTCC-GCTAGCTATGTTAGAGTTGCGAGCTTAACTCT-CAAGCTCTTAGAATATC
41852802 AACT
63 AACT
*
41852806 GGGAGCGTAGGTCCGCTAGCTAT
1 -GGAGCATAGGTCCGCTAGCTAT
41852829 TTTTGGAGGT
Statistics
Matches: 125, Mismatches: 23, Indels: 24
0.73 0.13 0.14
Matches are distributed among these distances:
67 5 0.04
68 59 0.47
69 19 0.15
70 37 0.30
71 5 0.04
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (66 bp):
GGAGCATAGGTCCGCTAGCTATGTTAGAGTTGCGAGCTTAACTCTCAAGCTCTTAGAATATCAAC
T
Found at i:41852750 original size:70 final size:70
Alignment explanation
Indices: 41852661--41852873 Score: 195
Period size: 70 Copynumber: 3.1 Consensus size: 70
41852651 CTCTTAGAAT
* *
41852661 ATCAACT-AGGAGCATAGGCCCGGTAGCTATTTTTAGAGGTTGTGATCATAAACCGTCAAACCTT
1 ATCAACTGA-GAGCGTAGGCCCGCTAGCTATTTTTAGAGGTTGTGATCATAAACCGTCAAACCTT
41852725 TATAAC
65 TATAAC
* * * * * * * *
41852731 ATCAACTGAGAGTGTAGGCCTGCTAGCTA-TGTTCGA-GTTGCGAGC-TTAACTC-TGC-AAGCT
1 ATCAACTGAGAGCGTAGGCCCGCTAGCTATTTTTAGAGGTTGTGATCATAAAC-CGT-CAAACCT
* *
41852791 CTTAGAAT
64 -TTATAAC
* * * * *
41852799 ATCAACTGGGAGCGTAGGTCCGCTAGCTATTTTTGGAGGTTGTGATCATAAACCGGCAAACCATT
1 ATCAACTGAGAGCGTAGGCCCGCTAGCTATTTTTAGAGGTTGTGATCATAAACCGTCAAACCTTT
41852864 ATAAC
66 ATAAC
41852869 ATCAA
1 ATCAA
41852874 GTACAAACAT
Statistics
Matches: 108, Mismatches: 26, Indels: 18
0.71 0.17 0.12
Matches are distributed among these distances:
67 9 0.08
68 39 0.36
69 10 0.09
70 42 0.39
71 8 0.07
ACGTcount: A:0.29, C:0.20, G:0.23, T:0.28
Consensus pattern (70 bp):
ATCAACTGAGAGCGTAGGCCCGCTAGCTATTTTTAGAGGTTGTGATCATAAACCGTCAAACCTTT
ATAAC
Found at i:41855876 original size:46 final size:46
Alignment explanation
Indices: 41855758--41855926 Score: 216
Period size: 46 Copynumber: 3.6 Consensus size: 46
41855748 TTTGAGTACT
* ** *
41855758 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTA
1 TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTCGGCTATACTTA
*
41855804 TCTGATCAAGTGACAGTGGAAAGTGATAAGTAATAGCTTCGGCTATACTTA
1 TCTGATCAAGTGAC-----AAAGTGATAAGTGATAGCTTCGGCTATACTTA
41855855 TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTCGGCTATACTTA
1 TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTCGGCTATACTTA
*
41855901 TCTGATC-AG-GAAACAAGTGATAAGTG
1 TCTGATCAAGTGACA-AAGTGATAAGTG
41855927 GCTACACTTA
Statistics
Matches: 110, Mismatches: 7, Indels: 13
0.85 0.05 0.10
Matches are distributed among these distances:
44 3 0.03
45 14 0.13
46 52 0.47
51 41 0.37
ACGTcount: A:0.34, C:0.14, G:0.23, T:0.29
Consensus pattern (46 bp):
TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTCGGCTATACTTA
Found at i:41856632 original size:51 final size:52
Alignment explanation
Indices: 41856577--41856770 Score: 184
Period size: 51 Copynumber: 3.8 Consensus size: 52
41856567 ATGTCAAAGT
*
41856577 GAAAGTGAT-GGTCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCA
1 GAAAGTGATAGGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCA
** * * *** *
41856628 GAAA--GATAGGTCGTATGTGTACTACTATGTGCAAGCTACTATACGTACCG
1 GAAAGTGATAGGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCA
* * * * *
41856678 GATAGCT--TCGATCACCTGTGTAGTACTATGTGCAGGCTACTACGTGTATCA
1 GAAAG-TGATAGGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCA
* * *
41856729 GATAGTGAT-GGTCACATGTGTATTACTATGTGTAGGCTACTA
1 GAAAGTGATAGGTCACATGTGTAGTACTATGTGCAGGCTACTA
41856771 TATGAACCGG
Statistics
Matches: 111, Mismatches: 26, Indels: 12
0.74 0.17 0.08
Matches are distributed among these distances:
49 3 0.03
50 37 0.33
51 70 0.63
52 1 0.01
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.30
Consensus pattern (52 bp):
GAAAGTGATAGGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCA
Found at i:41856725 original size:101 final size:102
Alignment explanation
Indices: 41856588--41856772 Score: 275
Period size: 101 Copynumber: 1.8 Consensus size: 102
41856578 AAAGTGATGG
* **
41856588 TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCAGAAA--GATAGGTCGTATGTGTACT
1 TCACCTGTGTAGTACTATGTGCAGGCTACTACGTGTACCAGAAAGTGAT-GGTCACATGTGTACT
41856651 ACTATGTGCAAGCTACTATACGTACCGGATAGCTTCGA
65 ACTATGTGCAAGCTACTATACGTACCGGATAGCTTCGA
* * *
41856689 TCACCTGTGTAGTACTATGTGCAGGCTACTACGTGTATCAGATAGTGATGGTCACATGTGTATTA
1 TCACCTGTGTAGTACTATGTGCAGGCTACTACGTGTACCAGAAAGTGATGGTCACATGTGTACTA
* *
41856754 CTATGTGTAGGCTACTATA
66 CTATGTGCAAGCTACTATA
41856773 TGAACCGGTA
Statistics
Matches: 74, Mismatches: 8, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
101 41 0.55
102 30 0.41
103 3 0.04
ACGTcount: A:0.26, C:0.18, G:0.24, T:0.31
Consensus pattern (102 bp):
TCACCTGTGTAGTACTATGTGCAGGCTACTACGTGTACCAGAAAGTGATGGTCACATGTGTACTA
CTATGTGCAAGCTACTATACGTACCGGATAGCTTCGA
Found at i:41856848 original size:46 final size:43
Alignment explanation
Indices: 41856776--41856879 Score: 120
Period size: 46 Copynumber: 2.3 Consensus size: 43
41856766 TACTATATGA
*
41856776 ACCGGTATCATTAATTATAAGGTGGTTGCTATGTGCTG-ATCCC
1 ACCGGTATCATTAATTAAAAGGTGGTTGCTATGTGCTGAAT-CC
* *
41856819 ACCGGATATCATTGATTACAAAGGGTGGTTGCTGTGTGCTGAATCC
1 ACCGG-TATCATTAATTA-AAA-GGTGGTTGCTATGTGCTGAATCC
41856865 ACCGTGTATCTATTA
1 ACCG-GTATC-ATTA
41856880 TTATTCCGAA
Statistics
Matches: 51, Mismatches: 4, Indels: 8
0.81 0.06 0.13
Matches are distributed among these distances:
43 5 0.10
44 11 0.22
45 2 0.04
46 27 0.53
47 6 0.12
ACGTcount: A:0.24, C:0.18, G:0.24, T:0.34
Consensus pattern (43 bp):
ACCGGTATCATTAATTAAAAGGTGGTTGCTATGTGCTGAATCC
Found at i:41861754 original size:18 final size:18
Alignment explanation
Indices: 41861728--41861766 Score: 60
Period size: 18 Copynumber: 2.2 Consensus size: 18
41861718 TCAACACATT
*
41861728 TTACCTAATTCACATATA
1 TTACATAATTCACATATA
*
41861746 TTACATAATTCACATGTA
1 TTACATAATTCACATATA
41861764 TTA
1 TTA
41861767 TAAATGATAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.38, C:0.18, G:0.03, T:0.41
Consensus pattern (18 bp):
TTACATAATTCACATATA
Found at i:41862287 original size:35 final size:35
Alignment explanation
Indices: 41862212--41862338 Score: 137
Period size: 35 Copynumber: 3.6 Consensus size: 35
41862202 GTACATTAAC
* * ** * * *
41862212 AATCCAACCAAAACACACCAGATGCTCACAAGATCC
1 AATCCATCCGAAACACACCA-ATGCTCGTAAAAGCT
**
41862248 AATCCATCTTAAACACACCAATGCTCGTAAAAGCT
1 AATCCATCCGAAACACACCAATGCTCGTAAAAGCT
* *
41862283 AATCCTTCCGAAACACACCAATGCTCGTAAGAGCT
1 AATCCATCCGAAACACACCAATGCTCGTAAAAGCT
*
41862318 AATCCCTCCGAAACACACCAA
1 AATCCATCCGAAACACACCAA
41862339 AATAGAGAGT
Statistics
Matches: 78, Mismatches: 13, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
35 61 0.78
36 17 0.22
ACGTcount: A:0.40, C:0.34, G:0.09, T:0.17
Consensus pattern (35 bp):
AATCCATCCGAAACACACCAATGCTCGTAAAAGCT
Found at i:41868908 original size:18 final size:18
Alignment explanation
Indices: 41868876--41868932 Score: 70
Period size: 15 Copynumber: 3.4 Consensus size: 18
41868866 TAGTGTCTTC
41868876 TTTGT-TTAGATATTGTA
1 TTTGTATTAGATATTGTA
*
41868893 TTTGTATTATATATTGTA
1 TTTGTATTAGATATTGTA
41868911 -TTGTATT-G-TATTGTA
1 TTTGTATTAGATATTGTA
41868926 -TTGTATT
1 TTTGTATT
41868933 TTTTTGTATT
Statistics
Matches: 37, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
15 14 0.38
17 12 0.32
18 11 0.30
ACGTcount: A:0.23, C:0.00, G:0.16, T:0.61
Consensus pattern (18 bp):
TTTGTATTAGATATTGTA
Found at i:41868912 original size:5 final size:5
Alignment explanation
Indices: 41868904--41868942 Score: 60
Period size: 5 Copynumber: 7.8 Consensus size: 5
41868894 TTGTATTATA
* *
41868904 TATTG TATTG TATTG TATTG TATTG TATTT TTTTG TATT
1 TATTG TATTG TATTG TATTG TATTG TATTG TATTG TATT
41868943 TTTTTGTTGG
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
5 30 1.00
ACGTcount: A:0.18, C:0.00, G:0.15, T:0.67
Consensus pattern (5 bp):
TATTG
Found at i:41869054 original size:31 final size:31
Alignment explanation
Indices: 41869009--41869097 Score: 117
Period size: 31 Copynumber: 2.9 Consensus size: 31
41868999 TAGTATGTAC
* *
41869009 ATTAGTATGAATATTATGTATTTTATGATAT
1 ATTAGTGTGAATATTATGTATGTTATGATAT
* *
41869040 ATTAGTGTGCATATTATGTATGTTACGATAT
1 ATTAGTGTGAATATTATGTATGTTATGATAT
*
41869071 TTTAGTGT-ATATATTATGTATGTTATG
1 ATTAGTGTGA-ATATTATGTATGTTATG
41869098 TGTCAGACCC
Statistics
Matches: 50, Mismatches: 7, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
31 50 1.00
ACGTcount: A:0.30, C:0.02, G:0.17, T:0.51
Consensus pattern (31 bp):
ATTAGTGTGAATATTATGTATGTTATGATAT
Found at i:41869212 original size:15 final size:15
Alignment explanation
Indices: 41869192--41869221 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
41869182 GTGCATATGC
41869192 ATTTGGGTGAAAGTT
1 ATTTGGGTGAAAGTT
41869207 ATTTGGGTGAAAGTT
1 ATTTGGGTGAAAGTT
41869222 TTGTCACAGA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.27, C:0.00, G:0.33, T:0.40
Consensus pattern (15 bp):
ATTTGGGTGAAAGTT
Found at i:41870834 original size:26 final size:26
Alignment explanation
Indices: 41870794--41870856 Score: 101
Period size: 26 Copynumber: 2.4 Consensus size: 26
41870784 GAATTTTCTA
41870794 AAAATTTTACTGGGGGTAAAATCGTC
1 AAAATTTTACTGGGGGTAAAATCGTC
*
41870820 AAAATTTTA-TCGGGGGTAAAATTGTC
1 AAAATTTTACT-GGGGGTAAAATCGTC
41870846 AAAATTTTACT
1 AAAATTTTACT
41870857 AGAGTAAAAT
Statistics
Matches: 34, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
25 1 0.03
26 32 0.94
27 1 0.03
ACGTcount: A:0.37, C:0.10, G:0.19, T:0.35
Consensus pattern (26 bp):
AAAATTTTACTGGGGGTAAAATCGTC
Found at i:41874124 original size:13 final size:13
Alignment explanation
Indices: 41874108--41874139 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
41874098 TTTCACATTT
*
41874108 TCTTTTCTTTCGC
1 TCTTTTCTTTCCC
41874121 TCTTTTCTTTCCC
1 TCTTTTCTTTCCC
41874134 TCTTTT
1 TCTTTT
41874140 TCATCCTCGC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.00, C:0.31, G:0.03, T:0.66
Consensus pattern (13 bp):
TCTTTTCTTTCCC
Found at i:41876769 original size:27 final size:26
Alignment explanation
Indices: 41876723--41876780 Score: 71
Period size: 27 Copynumber: 2.2 Consensus size: 26
41876713 TTGACACACT
*
41876723 TTAAATATGTAGGAAATTAAACAAAC
1 TTAAATATGTACGAAATTAAACAAAC
* * *
41876749 ATTAAATATGTCCGAATTTAAACATAC
1 -TTAAATATGTACGAAATTAAACAAAC
41876776 TTAAA
1 TTAAA
41876781 ACATGTATTA
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
26 5 0.19
27 22 0.81
ACGTcount: A:0.50, C:0.10, G:0.09, T:0.31
Consensus pattern (26 bp):
TTAAATATGTACGAAATTAAACAAAC
Found at i:41876859 original size:38 final size:38
Alignment explanation
Indices: 41876786--41876895 Score: 130
Period size: 38 Copynumber: 2.9 Consensus size: 38
41876776 TTAAAACATG
* * * * *
41876786 TATTAAAGATGTCCTAAACTATGACATAATTAAAACCCT
1 TATTAATGATGTTC-AAATTATAACATAATTAAAACCCA
* * *
41876825 TATTAATGTTGTTCAGATTATAACATAATTAAAACTCA
1 TATTAATGATGTTCAAATTATAACATAATTAAAACCCA
*
41876863 TATTAATGATGTTCAAATTATGACATAATTAAA
1 TATTAATGATGTTCAAATTATAACATAATTAAA
41876896 GACTCAAACT
Statistics
Matches: 60, Mismatches: 11, Indels: 1
0.83 0.15 0.01
Matches are distributed among these distances:
38 49 0.82
39 11 0.18
ACGTcount: A:0.44, C:0.12, G:0.08, T:0.36
Consensus pattern (38 bp):
TATTAATGATGTTCAAATTATAACATAATTAAAACCCA
Found at i:41876916 original size:9 final size:9
Alignment explanation
Indices: 41876902--41876926 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
41876892 TAAAGACTCA
41876902 AACTAAAGT
1 AACTAAAGT
41876911 AACTAAAGT
1 AACTAAAGT
41876920 AACTAAA
1 AACTAAA
41876927 ATGGATAAAC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.60, C:0.12, G:0.08, T:0.20
Consensus pattern (9 bp):
AACTAAAGT
Found at i:41879668 original size:13 final size:13
Alignment explanation
Indices: 41879650--41879677 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
41879640 GTCAGTACAC
41879650 AAAATCTTCAACT
1 AAAATCTTCAACT
41879663 AAAATCTTCAACT
1 AAAATCTTCAACT
41879676 AA
1 AA
41879678 TATCACAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.50, C:0.21, G:0.00, T:0.29
Consensus pattern (13 bp):
AAAATCTTCAACT
Found at i:41880025 original size:24 final size:24
Alignment explanation
Indices: 41879996--41880044 Score: 73
Period size: 25 Copynumber: 2.0 Consensus size: 24
41879986 AAAAAAAAGA
*
41879996 GGTG-AAGGAGAAAACGAAAGAGAT
1 GGTGAAAGGAAAAAACGAAAG-GAT
41880020 GGTGAAAGGAAAAAACGAAAGGAT
1 GGTGAAAGGAAAAAACGAAAGGAT
41880044 G
1 G
41880045 AACAAAAGAG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 8 0.35
25 15 0.65
ACGTcount: A:0.51, C:0.04, G:0.37, T:0.08
Consensus pattern (24 bp):
GGTGAAAGGAAAAAACGAAAGGAT
Found at i:41880807 original size:27 final size:27
Alignment explanation
Indices: 41880777--41880862 Score: 84
Period size: 27 Copynumber: 3.1 Consensus size: 27
41880767 AAATTAGAAA
*
41880777 AAAAATTGTAAAATTGTAAAATTTTAT
1 AAAAATTGTAAAATTATAAAATTTTAT
* *
41880804 AAAAATCGTAAAAAATTATAAAA-TATAT
1 AAAAATTGT--AAAATTATAAAATTTTAT
* **
41880832 AGAAATATAAAAAATTATAAAATTTTAT
1 AAAAAT-TGTAAAATTATAAAATTTTAT
41880860 AAA
1 AAA
41880863 GTCATAAGAA
Statistics
Matches: 46, Mismatches: 9, Indels: 7
0.74 0.15 0.11
Matches are distributed among these distances:
27 20 0.43
28 15 0.33
29 11 0.24
ACGTcount: A:0.60, C:0.01, G:0.05, T:0.34
Consensus pattern (27 bp):
AAAAATTGTAAAATTATAAAATTTTAT
Found at i:41880853 original size:56 final size:57
Alignment explanation
Indices: 41880786--41880900 Score: 153
Period size: 56 Copynumber: 2.0 Consensus size: 57
41880776 AAAAAATTGT
* * *
41880786 AAAATTGTAAAATTTTATAAAAATCGTAA-AAAATTAT-AAAATATATAGAAATATAA
1 AAAATTATAAAATTTTAT-AAAATCATAAGAAAATTATAAAAATATAAAGAAATATAA
* *
41880842 AAAATTATAAAATTTTATAAAGTCATAAGAAAATTATACAAAATGTAAAGAAATATAA
1 AAAATTATAAAATTTTATAAAATCATAAGAAAATTATA-AAAATATAAAGAAATATAA
41880900 A
1 A
41880901 TTTCATAAAA
Statistics
Matches: 51, Mismatches: 5, Indels: 4
0.85 0.08 0.07
Matches are distributed among these distances:
55 8 0.16
56 25 0.49
58 18 0.35
ACGTcount: A:0.61, C:0.03, G:0.06, T:0.30
Consensus pattern (57 bp):
AAAATTATAAAATTTTATAAAATCATAAGAAAATTATAAAAATATAAAGAAATATAA
Found at i:41880913 original size:58 final size:55
Alignment explanation
Indices: 41880786--41880921 Score: 143
Period size: 56 Copynumber: 2.4 Consensus size: 55
41880776 AAAAAATTGT
* * *
41880786 AAAATTGTAAAATTTTATAAAAATCGTAAAAAATTATAAAATATATAGAAATATAA
1 AAAATTATAAAATTTTATAAAAATCATAAAAAATTATAAAATATAAAGAAATAT-A
* *
41880842 AAAATTATAAAATTTTAT-AAAGTCATAAGAAAATTATACAAAATGTAAAGAAATAT-
1 AAAATTATAAAATTTTATAAAAATCATAA-AAAATTAT--AAAATATAAAGAAATATA
* *
41880898 AAATTTCATAAAA-ATTATAAAAAT
1 AAAATT-ATAAAATTTTATAAAAAT
41880922 TATTGTAACA
Statistics
Matches: 67, Mismatches: 8, Indels: 9
0.80 0.10 0.11
Matches are distributed among these distances:
55 8 0.12
56 34 0.51
57 10 0.15
58 15 0.22
ACGTcount: A:0.60, C:0.03, G:0.05, T:0.32
Consensus pattern (55 bp):
AAAATTATAAAATTTTATAAAAATCATAAAAAATTATAAAATATAAAGAAATATA
Found at i:41881083 original size:10 final size:10
Alignment explanation
Indices: 41881070--41881095 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
41881060 TTTTTATGAT
41881070 TTTTATAAAA
1 TTTTATAAAA
41881080 TTTTATAAAA
1 TTTTATAAAA
41881090 TTTTAT
1 TTTTAT
41881096 TTTTTTACGA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (10 bp):
TTTTATAAAA
Found at i:41881196 original size:46 final size:44
Alignment explanation
Indices: 41881087--41881205 Score: 116
Period size: 46 Copynumber: 2.5 Consensus size: 44
41881077 AAATTTTATA
41881087 AAATTTTATTTTTTTACGATTTTTATAAAAAAACTTTTAATTTTTAAT
1 AAATTTTATTTTTTTA-GATTTTTATAAAAAAA---TTAATTTTTAAT
*
41881135 AAATTTTATATTTTTTAGATTTTTATTAAAATTAAA-TAATTTTT-CT
1 AAATTTTAT-TTTTTTAGATTTTTA-TAAAA--AAATTAATTTTTAAT
**
41881181 AAATTTTATTGTTTTTTTATTTTTA
1 AAATTTTATT-TTTTTAGATTTTTA
41881206 ATAAGAGTAT
Statistics
Matches: 63, Mismatches: 3, Indels: 12
0.81 0.04 0.15
Matches are distributed among these distances:
45 1 0.02
46 22 0.35
47 8 0.13
48 17 0.27
49 12 0.19
51 3 0.05
ACGTcount: A:0.34, C:0.03, G:0.03, T:0.61
Consensus pattern (44 bp):
AAATTTTATTTTTTTAGATTTTTATAAAAAAATTAATTTTTAAT
Found at i:41883828 original size:15 final size:15
Alignment explanation
Indices: 41883808--41883837 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
41883798 TGTTTTTGGC
41883808 TTTTCAGAAGTGCTT
1 TTTTCAGAAGTGCTT
41883823 TTTTCAGAAGTGCTT
1 TTTTCAGAAGTGCTT
41883838 ACAATTTTTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.20, C:0.13, G:0.20, T:0.47
Consensus pattern (15 bp):
TTTTCAGAAGTGCTT
Found at i:41892878 original size:9 final size:9
Alignment explanation
Indices: 41892853--41892913 Score: 52
Period size: 9 Copynumber: 6.7 Consensus size: 9
41892843 TAATAATCTT
41892853 TTATAAAAA
1 TTATAAAAA
* *
41892862 ATAAAAAAA
1 TTATAAAAA
41892871 TTATAAAAA
1 TTATAAAAA
*
41892880 -TATTAAAA
1 TTATAAAAA
*
41892888 TTGATATAAAC
1 TT-ATA-AAAA
*
41892899 TTATAAATA
1 TTATAAAAA
41892908 TTATAA
1 TTATAA
41892914 GGGTAAACCA
Statistics
Matches: 40, Mismatches: 9, Indels: 6
0.73 0.16 0.11
Matches are distributed among these distances:
8 7 0.17
9 23 0.57
10 5 0.12
11 5 0.12
ACGTcount: A:0.62, C:0.02, G:0.02, T:0.34
Consensus pattern (9 bp):
TTATAAAAA
Found at i:41898378 original size:38 final size:39
Alignment explanation
Indices: 41898336--41898417 Score: 105
Period size: 38 Copynumber: 2.1 Consensus size: 39
41898326 AGCAAATAAT
* *
41898336 TATACTTATCAA-CCACATGTGCCGAATGC-ACATATATA
1 TATACTTAT-AATCCACATATGCCGAATGCAACACATATA
*
41898374 TATACTTATAATTCACATATGCCGAATGCATACACATATA
1 TATACTTATAATCCACATATGCCGAATGCA-ACACATATA
41898414 TATA
1 TATA
41898418 TCCAACAATT
Statistics
Matches: 38, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
37 2 0.05
38 24 0.63
40 12 0.32
ACGTcount: A:0.39, C:0.21, G:0.09, T:0.32
Consensus pattern (39 bp):
TATACTTATAATCCACATATGCCGAATGCAACACATATA
Found at i:41898638 original size:41 final size:41
Alignment explanation
Indices: 41898593--41898706 Score: 201
Period size: 41 Copynumber: 2.8 Consensus size: 41
41898583 AACAGATTTT
41898593 CCGGCACTTAGCCTGCTAGGCTTAAAGCCTGATTCAGATCA
1 CCGGCACTTAGCCTGCTAGGCTTAAAGCCTGATTCAGATCA
* *
41898634 CCGGCACTTAGCCTGCTAGGCTTATAGCCTGATTCAGTTCA
1 CCGGCACTTAGCCTGCTAGGCTTAAAGCCTGATTCAGATCA
*
41898675 CCGGCACTTAGCCTGCTAGGCTTTAAGCCTGA
1 CCGGCACTTAGCCTGCTAGGCTTAAAGCCTGA
41898707 ATTGATTCAC
Statistics
Matches: 69, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
41 69 1.00
ACGTcount: A:0.21, C:0.30, G:0.23, T:0.26
Consensus pattern (41 bp):
CCGGCACTTAGCCTGCTAGGCTTAAAGCCTGATTCAGATCA
Found at i:41898716 original size:41 final size:40
Alignment explanation
Indices: 41898593--41898736 Score: 177
Period size: 41 Copynumber: 3.5 Consensus size: 40
41898583 AACAGATTTT
*
41898593 CCGGCACTTAGCCTGCTAGGCTTAAAGCCTGATTCAGA-TCA
1 CCGGCACTTAGCCTGCTAGGCTTTAAGCCTGATT--GATTCA
*
41898634 CCGGCACTTAGCCTGCTAGGC-TTATAGCCTGATTCAGTTCA
1 CCGGCACTTAGCCTGCTAGGCTTTA-AGCCTGATTGA-TTCA
41898675 CCGGCACTTAGCCTGCTAGGCTTTAAGCCTGAATTGATTCA
1 CCGGCACTTAGCCTGCTAGGCTTTAAGCCTG-ATTGATTCA
* *
41898716 CTGGCA-ATATGCCTGCTAGGC
1 CCGGCACTTA-GCCTGCTAGGC
41898737 GCTGAGCCTG
Statistics
Matches: 92, Mismatches: 5, Indels: 12
0.84 0.05 0.11
Matches are distributed among these distances:
39 1 0.01
40 4 0.04
41 80 0.87
42 7 0.08
ACGTcount: A:0.22, C:0.28, G:0.23, T:0.27
Consensus pattern (40 bp):
CCGGCACTTAGCCTGCTAGGCTTTAAGCCTGATTGATTCA
Found at i:41898745 original size:82 final size:81
Alignment explanation
Indices: 41898593--41898747 Score: 199
Period size: 82 Copynumber: 1.9 Consensus size: 81
41898583 AACAGATTTT
* *
41898593 CCGGCACTTAGCCTGCTAGGCTTAAAGCCTGATTCAGATCACCGGCACTTAGCCTGCTAGGCTTA
1 CCGGCACTTAGCCTGCTAGGCTTAAAGCCTGATT-AGATCACCGGCAATTAGCCTGCTAGGCCTA
*
41898658 TAGCCTGATTCAGTTCA
65 GAGCCTGATTCAGTTCA
* *
41898675 CCGGCACTTAGCCTGCTAGGCTTTAAGCCTGAATT-GATTCACTGGCAA-TATGCCTGCTAGGCG
1 CCGGCACTTAGCCTGCTAGGCTTAAAGCCTG-ATTAGA-TCACCGGCAATTA-GCCTGCTAGGC-
41898738 CT-GAGCCTGA
62 CTAGAGCCTGA
41898748 ATACGCAATT
Statistics
Matches: 64, Mismatches: 5, Indels: 8
0.83 0.06 0.10
Matches are distributed among these distances:
81 4 0.06
82 56 0.88
83 4 0.06
ACGTcount: A:0.21, C:0.28, G:0.24, T:0.26
Consensus pattern (81 bp):
CCGGCACTTAGCCTGCTAGGCTTAAAGCCTGATTAGATCACCGGCAATTAGCCTGCTAGGCCTAG
AGCCTGATTCAGTTCA
Found at i:41898963 original size:15 final size:15
Alignment explanation
Indices: 41898943--41898972 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
41898933 CGCCACAAAA
*
41898943 AATGCCGCTGATGTT
1 AATGCCGCTAATGTT
41898958 AATGCCGCTAATGTT
1 AATGCCGCTAATGTT
41898973 TGTGGCGTTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.23, C:0.20, G:0.23, T:0.33
Consensus pattern (15 bp):
AATGCCGCTAATGTT
Found at i:41899039 original size:43 final size:43
Alignment explanation
Indices: 41898991--41899087 Score: 176
Period size: 43 Copynumber: 2.3 Consensus size: 43
41898981 TTATAGAAAT
* *
41898991 AAACGCCGCTAAAGGCCATGTTCTTTAGCGGCGCTTTTCCCGC
1 AAACGCCGCTAAAGGCCATGTTCTTTAGCAGCGCTTTTCCCAC
41899034 AAACGCCGCTAAAGGCCATGTTCTTTAGCAGCGCTTTTCCCAC
1 AAACGCCGCTAAAGGCCATGTTCTTTAGCAGCGCTTTTCCCAC
41899077 AAACGCCGCTA
1 AAACGCCGCTA
41899088 TTGTTTGGTG
Statistics
Matches: 52, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
43 52 1.00
ACGTcount: A:0.23, C:0.33, G:0.21, T:0.24
Consensus pattern (43 bp):
AAACGCCGCTAAAGGCCATGTTCTTTAGCAGCGCTTTTCCCAC
Found at i:41899644 original size:25 final size:26
Alignment explanation
Indices: 41899593--41899654 Score: 90
Period size: 25 Copynumber: 2.4 Consensus size: 26
41899583 TTTTACAATG
* *
41899593 ATTAAGTTATGTAAATAATATGAGTT
1 ATTAAGTTATGCAAATAATATAAGTT
*
41899619 ATTAAGTTATGCATAT-ATATAAGTT
1 ATTAAGTTATGCAAATAATATAAGTT
41899644 ATTAAGTTATG
1 ATTAAGTTATG
41899655 TAAGTTATTA
Statistics
Matches: 33, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
25 19 0.58
26 14 0.42
ACGTcount: A:0.40, C:0.02, G:0.15, T:0.44
Consensus pattern (26 bp):
ATTAAGTTATGCAAATAATATAAGTT
Found at i:41899658 original size:17 final size:17
Alignment explanation
Indices: 41899593--41899664 Score: 58
Period size: 17 Copynumber: 4.2 Consensus size: 17
41899583 TTTTACAATG
* *
41899593 ATTAAGTTATGTAAATA
1 ATTAAGTTATGTAAGTT
*
41899610 ATATGAGTTAT-TAAGTT
1 AT-TAAGTTATGTAAGTT
** *
41899627 ATGCA-TATATATAAGTT
1 ATTAAGT-TATGTAAGTT
41899644 ATTAAGTTATGTAAGTT
1 ATTAAGTTATGTAAGTT
41899661 ATTA
1 ATTA
41899665 TGTGAGTTAT
Statistics
Matches: 43, Mismatches: 8, Indels: 8
0.73 0.14 0.14
Matches are distributed among these distances:
15 1 0.02
16 4 0.09
17 30 0.70
18 8 0.19
ACGTcount: A:0.40, C:0.01, G:0.14, T:0.44
Consensus pattern (17 bp):
ATTAAGTTATGTAAGTT
Found at i:41899779 original size:17 final size:17
Alignment explanation
Indices: 41899757--41899816 Score: 68
Period size: 17 Copynumber: 3.5 Consensus size: 17
41899747 ATATATTTTA
41899757 AAATTATTAAGTTATGT
1 AAATTATTAAGTTATGT
* *
41899774 AAATTATGTGAGTTGT-T
1 AAATTAT-TAAGTTATGT
*
41899791 AAGTTATTAAGTTATGT
1 AAATTATTAAGTTATGT
*
41899808 AAGTTATTA
1 AAATTATTA
41899817 TGTGAATTAT
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
16 6 0.17
17 24 0.67
18 6 0.17
ACGTcount: A:0.37, C:0.00, G:0.17, T:0.47
Consensus pattern (17 bp):
AAATTATTAAGTTATGT
Found at i:41899802 original size:34 final size:36
Alignment explanation
Indices: 41899760--41899843 Score: 118
Period size: 34 Copynumber: 2.3 Consensus size: 36
41899750 TATTTTAAAA
* *
41899760 TTATTAAGTTATGTAA-ATTATGTGAGTTGT-TAAG
1 TTATTAAGTTATGTAATATTATGTGAATTATATAAG
41899794 TTATTAAGTTATGTAAGTTATTATGTGAATTATATAAG
1 TTATTAAGTTATGTAA--TATTATGTGAATTATATAAG
41899832 TTATTAAGTTAT
1 TTATTAAGTTAT
41899844 ATGGTATGAC
Statistics
Matches: 44, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
34 16 0.36
37 12 0.27
38 16 0.36
ACGTcount: A:0.35, C:0.00, G:0.17, T:0.49
Consensus pattern (36 bp):
TTATTAAGTTATGTAATATTATGTGAATTATATAAG
Found at i:41899812 original size:9 final size:8
Alignment explanation
Indices: 41899760--41899816 Score: 60
Period size: 9 Copynumber: 6.8 Consensus size: 8
41899750 TATTTTAAAA
41899760 TTATTAAG
1 TTATTAAG
*
41899768 TTATGTAAA
1 TTAT-TAAG
*
41899777 TTATGTGAG
1 TTAT-TAAG
*
41899786 TTGTTAAG
1 TTATTAAG
41899794 TTATTAAG
1 TTATTAAG
41899802 TTATGTAAG
1 TTAT-TAAG
41899811 TTATTA
1 TTATTA
41899817 TGTGAATTAT
Statistics
Matches: 41, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
8 20 0.49
9 21 0.51
ACGTcount: A:0.33, C:0.00, G:0.18, T:0.49
Consensus pattern (8 bp):
TTATTAAG
Found at i:41899839 original size:46 final size:46
Alignment explanation
Indices: 41899768--41899940 Score: 159
Period size: 46 Copynumber: 3.6 Consensus size: 46
41899758 AATTATTAAG
* * *
41899768 TTATGTAAATTATGTGAGTTGTTAAGTTATTAAGTTATGTAAGTTA
1 TTATGTAAATTATATAAGTTATTAAGTTATTAAGTTATGTAAGTTA
* * * *
41899814 TTATGTGAATTATATAAGTTATTAAGTTA-TATGGTATGACATATATATATGTA
1 TTATGTAAATTATATAAGTTATTAAGTTATTA-AGT-T---ATGTA-A-GT-TA
* * ** *
41899867 TTATGTAAATTATGTGAGTTGCTAAGTTGTTAAGTTATGTAAGTTA
1 TTATGTAAATTATATAAGTTATTAAGTTATTAAGTTATGTAAGTTA
41899913 TTATGTAAATTATATAAGTTATTAAGTT
1 TTATGTAAATTATATAAGTTATTAAGTT
41899941 GGACATTTTT
Statistics
Matches: 98, Mismatches: 20, Indels: 18
0.72 0.15 0.13
Matches are distributed among these distances:
45 2 0.02
46 53 0.54
47 2 0.02
48 1 0.01
49 4 0.04
50 4 0.04
51 1 0.01
52 2 0.02
53 27 0.28
54 2 0.02
ACGTcount: A:0.35, C:0.01, G:0.17, T:0.47
Consensus pattern (46 bp):
TTATGTAAATTATATAAGTTATTAAGTTATTAAGTTATGTAAGTTA
Found at i:41899845 original size:17 final size:17
Alignment explanation
Indices: 41899760--41899845 Score: 66
Period size: 17 Copynumber: 4.8 Consensus size: 17
41899750 TATTTTAAAA
* *
41899760 TTATTAAGTTATGTAAA
1 TTATTAAGTTATATAAG
* *
41899777 TTATGTGAGTTGT-TAAG
1 TTAT-TAAGTTATATAAG
*
41899794 TTATTAAGTTATGTAAG
1 TTATTAAGTTATATAAG
*
41899811 TTATTATGTGAATTATATAAG
1 TTATTA----AGTTATATAAG
41899832 TTATTAAGTTATAT
1 TTATTAAGTTATAT
41899846 GGTATGACAT
Statistics
Matches: 55, Mismatches: 8, Indels: 12
0.73 0.11 0.16
Matches are distributed among these distances:
16 6 0.11
17 28 0.51
18 6 0.11
21 15 0.27
ACGTcount: A:0.35, C:0.00, G:0.16, T:0.49
Consensus pattern (17 bp):
TTATTAAGTTATATAAG
Found at i:41899918 original size:53 final size:54
Alignment explanation
Indices: 41899784--41899919 Score: 120
Period size: 53 Copynumber: 2.6 Consensus size: 54
41899774 AAATTATGTG
* * * *
41899784 AGTTGTTAAGTTAT-TAAGTTATGTAAGTTATTATGTGAATTATATAAGTTATTA
1 AGTTGTTAAGTTATGTAAGTTATATATG-TATTATGTAAATTATATAAGTTACTA
* * * * * *
41899838 AGTT-ATATGGTATG-ACA-TATATATATGTATTATGTAAATTATGTGAGTTGCTA
1 AGTTGTTAAGTTATGTA-AGT-TATATATGTATTATGTAAATTATATAAGTTACTA
41899891 AGTTGTTAAGTTATGTAAGTTAT-TATGTA
1 AGTTGTTAAGTTATGTAAGTTATATATGTA
41899920 AATTATATAA
Statistics
Matches: 63, Mismatches: 13, Indels: 13
0.71 0.15 0.15
Matches are distributed among these distances:
53 39 0.62
54 22 0.35
55 2 0.03
ACGTcount: A:0.34, C:0.01, G:0.18, T:0.46
Consensus pattern (54 bp):
AGTTGTTAAGTTATGTAAGTTATATATGTATTATGTAAATTATATAAGTTACTA
Found at i:41900577 original size:21 final size:21
Alignment explanation
Indices: 41900553--41900599 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
41900543 TTAACTATTT
* *
41900553 AAATTAGTTAATGATATTGTA
1 AAATTAGATAATGAAATTGTA
* *
41900574 AAATTAGATGATTAAATTGTA
1 AAATTAGATAATGAAATTGTA
41900595 AAATT
1 AAATT
41900600 TCAAATTTAA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.47, C:0.00, G:0.13, T:0.40
Consensus pattern (21 bp):
AAATTAGATAATGAAATTGTA
Found at i:41902405 original size:103 final size:103
Alignment explanation
Indices: 41902226--41902594 Score: 614
Period size: 103 Copynumber: 3.6 Consensus size: 103
41902216 TAGCCGTTAT
** * *
41902226 TGGTGGATCCCGCACTTAGCACCACCACTGAATCGGGGAATCAGCACTTAGCAACTCCTCGGGGG
1 TGGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
41902291 AATCAGCACATAGCAACCCCCTTTTTATTTCAAAGATA
66 AATCAGCACATAGCAACCCCCTTTTTATTTCAAAGATA
41902329 TGGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
1 TGGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
41902394 AATCAGCACATAGCAACCCCCTTTTTATTTCAAAGATA
66 AATCAGCACATAGCAACCCCCTTTTTATTTCAAAGATA
41902432 TGGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
1 TGGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
**
41902497 AATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATA
66 AATCAGCACATAGCAACCCCCTTT-TTATTTCAAAGATA
* * * **
41902536 TGGTGGATCA-CGCACATAGCACCACCCATAAATCGGGGAATCAGCACACAGCAACCCCT
1 TGGTGGAT-ATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCT
41902595 TTTATATACA
Statistics
Matches: 253, Mismatches: 11, Indels: 3
0.95 0.04 0.01
Matches are distributed among these distances:
103 188 0.74
104 64 0.25
105 1 0.00
ACGTcount: A:0.30, C:0.29, G:0.20, T:0.20
Consensus pattern (103 bp):
TGGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
AATCAGCACATAGCAACCCCCTTTTTATTTCAAAGATA
Found at i:41913791 original size:397 final size:397
Alignment explanation
Indices: 41913057--41914007 Score: 1600
Period size: 397 Copynumber: 2.4 Consensus size: 397
41913047 ATAGATATAT
* *
41913057 AAACTGAGAACAGAACTTTGCGGCGTTTTTTCCTTAGTGCCGCTAATGACCATATTTAGCGGCGT
1 AAACTGAGAACAGAACTTTGCGGCGTTTTTTCCTTAGCGCCGCTAATGACCACATTTAGCGGCGT
* * * *
41913122 TTTTACCTTAACGCCGCAAAACCCATTAAATTCGCAGCCAAAAACTACACCATTTTGTCTTCATT
66 TTTTACCTTAGCTCCGCAAAACCCATTAAATTCGCAGCCAAAAACTGCACCGTTTTGTCTTCATT
* * *
41913187 ATTAAGAATATTTTTGCGGCGTTTTTTAGTAGCGCCAGTAATGCCCAGGCAAAATGACACCGTTT
131 ATTAAGAATA-TTTTGCGGCGTTTTTTACTAGCGCCACTAATGCCCAGGCAAAACGACACCGTTT
* **
41913252 TACGAAAACTGAGAACAGAACTTGCGGCGTTTTTTCCTTAGTGCCGCTAATGACCACCTTTAGTG
195 TACGAAAACTGAGAACAGAACTTGCGGCGTTTTTTCCTTAGCGCCGCTAATGACCACCTTTAGCA
41913317 GCGTTTTTCCCTTAGCGCCGCAAAACCCATTAAATTCACAGCCAAAAACTGCACCGTTTTGTCTT
260 GCGTTTTTCCCTTAGCGCCGCAAAACCCATTAAATTCACAGCCAAAAACTGCACCGTTTTGTCTT
* *
41913382 CATTATTAAGAATTTTTTACGACGTTTTTTAGTAGCGCCACTAATGCCCAGGAAAAACGACACCG
325 CATTATTAAGAATATTTTACGACATTTTTTAGTAGCGCCACTAATGCCCAGGAAAAACGACACCG
41913447 TTTTACGA
390 TTTTACGA
41913455 AAACTGAGAACAGAACTTTGCGGCGTTTTTTCCTTAGCGCCGCTAATGACCACATTTAGCGGCGT
1 AAACTGAGAACAGAACTTTGCGGCGTTTTTTCCTTAGCGCCGCTAATGACCACATTTAGCGGCGT
*
41913520 TTTTACCGTAGCTCCGCAAAACCCATTAAATTCGCAGCCAAAAACTGCACCGTTTTGTCTTCATT
66 TTTTACCTTAGCTCCGCAAAACCCATTAAATTCGCAGCCAAAAACTGCACCGTTTTGTCTTCATT
*
41913585 ATTAAGAATATTTTGCGGCGTTTTTTTCTAGCGCCACTAATGCCCAGGCAAAACGACACCGTTTT
131 ATTAAGAATATTTTGCGGCGTTTTTTACTAGCGCCACTAATGCCCAGGCAAAACGACACCGTTTT
*
41913650 ACGAAAACTGAGAACAGAACTTTGCGGTGTTTTTTCCTTAGCGCCGCT-ATGACCACCTTTAGCA
196 ACGAAAACTGAGAACAGAAC-TTGCGGCGTTTTTTCCTTAGCGCCGCTAATGACCACCTTTAGCA
* * *
41913714 GCGTTTTTCCCTTAGCGCCGCAAAACCCATTAAATTCGCGGCCAAAAACTGCACTGTTTTGTCTT
260 GCGTTTTTCCCTTAGCGCCGCAAAACCCATTAAATTCACAGCCAAAAACTGCACCGTTTTGTCTT
* * * *
41913779 TATTATTAAGAATATTTTGCGGCATTTTTTAGTAGCGCCACTAATGCCCAGGCAAAACGACACCG
325 CATTATTAAGAATATTTTACGACATTTTTTAGTAGCGCCACTAATGCCCAGGAAAAACGACACCG
41913844 TTTTACGA
390 TTTTACGA
*
41913852 AAACTGAGAACAGAACTTTGCGGCGTTTTTTCCTTAGCGCCGCTAATGACCACCTTTAGCGGCGT
1 AAACTGAGAACAGAACTTTGCGGCGTTTTTTCCTTAGCGCCGCTAATGACCACATTTAGCGGCGT
* * *
41913917 TTTTCCCTTAG-TGCCGCAAAACCCATTAAATTCACAGCAAAAAACTGCACCGTTTTGTCTTCAT
66 TTTTACCTTAGCT-CCGCAAAACCCATTAAATTCGCAGCCAAAAACTGCACCGTTTTGTCTTCAT
*
41913981 TATTAAGAATTTTTTGCGGCGTTTTTT
130 TATTAAGAATATTTTGCGGCGTTTTTT
41914008 CCTTAGCACC
Statistics
Matches: 521, Mismatches: 30, Indels: 5
0.94 0.05 0.01
Matches are distributed among these distances:
396 1 0.00
397 362 0.69
398 158 0.30
ACGTcount: A:0.27, C:0.24, G:0.18, T:0.31
Consensus pattern (397 bp):
AAACTGAGAACAGAACTTTGCGGCGTTTTTTCCTTAGCGCCGCTAATGACCACATTTAGCGGCGT
TTTTACCTTAGCTCCGCAAAACCCATTAAATTCGCAGCCAAAAACTGCACCGTTTTGTCTTCATT
ATTAAGAATATTTTGCGGCGTTTTTTACTAGCGCCACTAATGCCCAGGCAAAACGACACCGTTTT
ACGAAAACTGAGAACAGAACTTGCGGCGTTTTTTCCTTAGCGCCGCTAATGACCACCTTTAGCAG
CGTTTTTCCCTTAGCGCCGCAAAACCCATTAAATTCACAGCCAAAAACTGCACCGTTTTGTCTTC
ATTATTAAGAATATTTTACGACATTTTTTAGTAGCGCCACTAATGCCCAGGAAAAACGACACCGT
TTTACGA
Found at i:41913817 original size:198 final size:199
Alignment explanation
Indices: 41913057--41914007 Score: 1591
Period size: 199 Copynumber: 4.8 Consensus size: 199
41913047 ATAGATATAT
* **
41913057 AAACTGAGAACAGAACTTTGCGGCGTTTTTTCCTTAGTGCCGCTAATGACCATATTTAGCGGCGT
1 AAACTGAGAACAGAACTTTGCGGCGTTTTTTCCTTAGCGCCGCTAATGACCACCTTTAGCGGCGT
* * * *
41913122 TTTTACCTTAACGCCGCAAAACCCATTAAATTCGCAGCCAAAAACTACACCATTTTGTCTTCATT
66 TTTTCCCTTAGCGCCGCAAAACCCATTAAATTCGCAGCCAAAAACTGCACCGTTTTGTCTTCATT
* *
41913187 ATTAAGAATATTTTTGCGGCGTTTTTTAGTAGCGCCAGTAATGCCCAGGCAAAATGACACCGTTT
131 ATTAAGAATA-TTTTGCGGCGTTTTTTAGTAGCGCCACTAATGCCCAGGCAAAACGACACCGTTT
41913252 TACGA
195 TACGA
* *
41913257 AAACTGAGAACAGAAC-TTGCGGCGTTTTTTCCTTAGTGCCGCTAATGACCACCTTTAGTGGCGT
1 AAACTGAGAACAGAACTTTGCGGCGTTTTTTCCTTAGCGCCGCTAATGACCACCTTTAGCGGCGT
*
41913321 TTTTCCCTTAGCGCCGCAAAACCCATTAAATTCACAGCCAAAAACTGCACCGTTTTGTCTTCATT
66 TTTTCCCTTAGCGCCGCAAAACCCATTAAATTCGCAGCCAAAAACTGCACCGTTTTGTCTTCATT
* * * *
41913386 ATTAAGAATTTTTTACGACGTTTTTTAGTAGCGCCACTAATGCCCAGGAAAAACGACACCGTTTT
131 ATTAAGAATATTTTGCGGCGTTTTTTAGTAGCGCCACTAATGCCCAGGCAAAACGACACCGTTTT
41913451 ACGA
196 ACGA
*
41913455 AAACTGAGAACAGAACTTTGCGGCGTTTTTTCCTTAGCGCCGCTAATGACCACATTTAGCGGCGT
1 AAACTGAGAACAGAACTTTGCGGCGTTTTTTCCTTAGCGCCGCTAATGACCACCTTTAGCGGCGT
* * *
41913520 TTTTACCGTAGCTCCGCAAAACCCATTAAATTCGCAGCCAAAAACTGCACCGTTTTGTCTTCATT
66 TTTTCCCTTAGCGCCGCAAAACCCATTAAATTCGCAGCCAAAAACTGCACCGTTTTGTCTTCATT
**
41913585 ATTAAGAATATTTTGCGGCGTTTTTTTCTAGCGCCACTAATGCCCAGGCAAAACGACACCGTTTT
131 ATTAAGAATATTTTGCGGCGTTTTTTAGTAGCGCCACTAATGCCCAGGCAAAACGACACCGTTTT
41913650 ACGA
196 ACGA
* *
41913654 AAACTGAGAACAGAACTTTGCGGTGTTTTTTCCTTAGCGCCGCT-ATGACCACCTTTAGCAGCGT
1 AAACTGAGAACAGAACTTTGCGGCGTTTTTTCCTTAGCGCCGCTAATGACCACCTTTAGCGGCGT
* * *
41913718 TTTTCCCTTAGCGCCGCAAAACCCATTAAATTCGCGGCCAAAAACTGCACTGTTTTGTCTTTATT
66 TTTTCCCTTAGCGCCGCAAAACCCATTAAATTCGCAGCCAAAAACTGCACCGTTTTGTCTTCATT
*
41913783 ATTAAGAATATTTTGCGGCATTTTTTAGTAGCGCCACTAATGCCCAGGCAAAACGACACCGTTTT
131 ATTAAGAATATTTTGCGGCGTTTTTTAGTAGCGCCACTAATGCCCAGGCAAAACGACACCGTTTT
41913848 ACGA
196 ACGA
41913852 AAACTGAGAACAGAACTTTGCGGCGTTTTTTCCTTAGCGCCGCTAATGACCACCTTTAGCGGCGT
1 AAACTGAGAACAGAACTTTGCGGCGTTTTTTCCTTAGCGCCGCTAATGACCACCTTTAGCGGCGT
* * *
41913917 TTTTCCCTTAGTGCCGCAAAACCCATTAAATTCACAGCAAAAAACTGCACCGTTTTGTCTTCATT
66 TTTTCCCTTAGCGCCGCAAAACCCATTAAATTCGCAGCCAAAAACTGCACCGTTTTGTCTTCATT
*
41913982 ATTAAGAATTTTTTGCGGCGTTTTTT
131 ATTAAGAATATTTTGCGGCGTTTTTT
41914008 CCTTAGCACC
Statistics
Matches: 700, Mismatches: 49, Indels: 5
0.93 0.06 0.01
Matches are distributed among these distances:
198 256 0.37
199 428 0.61
200 16 0.02
ACGTcount: A:0.27, C:0.24, G:0.18, T:0.31
Consensus pattern (199 bp):
AAACTGAGAACAGAACTTTGCGGCGTTTTTTCCTTAGCGCCGCTAATGACCACCTTTAGCGGCGT
TTTTCCCTTAGCGCCGCAAAACCCATTAAATTCGCAGCCAAAAACTGCACCGTTTTGTCTTCATT
ATTAAGAATATTTTGCGGCGTTTTTTAGTAGCGCCACTAATGCCCAGGCAAAACGACACCGTTTT
ACGA
Found at i:41914061 original size:125 final size:125
Alignment explanation
Indices: 41913868--41914121 Score: 445
Period size: 125 Copynumber: 2.0 Consensus size: 125
41913858 AGAACAGAAC
* *
41913868 TTTGCGGCGTTTTTTCCTTAGCGCCGCTAATGACCACCTTTAGCGGCGTTTTTCCCTTAGTGCCG
1 TTTGCGGCGTTTTTTCCTTAGCACCGCTAATGACCACCTTTAGCGGCGTTTTTCCCTTAGCGCCG
*
41913933 CAAAACCCATTAAATTCACAGCAAAAAACTGCACCGTTTTGTCTTCATTATTAAGAATTT
66 CAAAACCCATTAAATTCACAGCAAAAAACTGCACCGTTTTGTCTTCATTATTAAGAATAT
* *
41913993 TTTGCGGCGTTTTTTCCTTAGCACCGCTAATGACCATCTTTAGCGGCGTTTTTCCCTTAGCGCTG
1 TTTGCGGCGTTTTTTCCTTAGCACCGCTAATGACCACCTTTAGCGGCGTTTTTCCCTTAGCGCCG
* *
41914058 CAAAACCCATTAAATTCGCAGCCAAAAACTGCACCGTTTTGTCTTCATTATTAAGAATAT
66 CAAAACCCATTAAATTCACAGCAAAAAACTGCACCGTTTTGTCTTCATTATTAAGAATAT
41914118 TTTG
1 TTTG
41914122 TACATTAAAT
Statistics
Matches: 122, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
125 122 1.00
ACGTcount: A:0.24, C:0.25, G:0.16, T:0.35
Consensus pattern (125 bp):
TTTGCGGCGTTTTTTCCTTAGCACCGCTAATGACCACCTTTAGCGGCGTTTTTCCCTTAGCGCCG
CAAAACCCATTAAATTCACAGCAAAAAACTGCACCGTTTTGTCTTCATTATTAAGAATAT
Found at i:41914243 original size:47 final size:48
Alignment explanation
Indices: 41914180--41914278 Score: 137
Period size: 47 Copynumber: 2.1 Consensus size: 48
41914170 CATAGTTTTG
* * **
41914180 TTTAGGTAATATTTATAAAAATTAGATAAAATTATCAATTTTAGT-TT
1 TTTAAGTAATATTTATAAAAATTAGATAAAAATAAAAATTTTAGTGTT
* *
41914227 TTTAAGTAGTATTTATAAAAATTAGGTAAAAATAAAAATTTTAGTGTT
1 TTTAAGTAATATTTATAAAAATTAGATAAAAATAAAAATTTTAGTGTT
41914275 TTTA
1 TTTA
41914279 TTTCTTTTTA
Statistics
Matches: 45, Mismatches: 6, Indels: 1
0.87 0.12 0.02
Matches are distributed among these distances:
47 39 0.87
48 6 0.13
ACGTcount: A:0.43, C:0.01, G:0.10, T:0.45
Consensus pattern (48 bp):
TTTAAGTAATATTTATAAAAATTAGATAAAAATAAAAATTTTAGTGTT
Found at i:41914617 original size:90 final size:89
Alignment explanation
Indices: 41914424--41914764 Score: 425
Period size: 90 Copynumber: 3.7 Consensus size: 89
41914414 TATAAAGAAC
* * * * **
41914424 TTATTTAATATATAAATTAAAAAGTACTAATTAATCCAAATCTTAAACCCTAACCCGACCCCAAA
1 TTATTTAATATATAAATTAAAAAGTACTAATTAATCTAAACCCTAAACCCTAACCTGACCCTGAA
41914489 TCCCTAACCCCTAACCCCTAAACT
66 TCCCTAACCCCTAACCCCTAAACT
41914513 TTATTTAATATATAAATTAAAAAGTACTAATTAATCTAAACCCTAAACCCTAAACCTGACCCTGA
1 TTATTTAATATATAAATTAAAAAGTACTAATTAATCTAAACCCTAAACCCT-AACCTGACCCTGA
41914578 ATCCCTAACCCCTAACCCCTAAACT
65 ATCCCTAACCCCTAACCCCTAAACT
* * * * * * *
41914603 TTATTTAATATATAAATTAAAAAAATAGTAATTAATCTAAACCTTAAACCATAACCCGATCTTGA
1 TTATTTAATATATAAATT-AAAAAGTACTAATTAATCTAAACCCTAAACCCTAACCTGACCCTGA
*
41914668 ATCCCTAACCCTTAACCCCTAACCCCTAAACC
65 A----T--CCC-TAACCCCTAACCCCTAAACT
* * *
41914700 TTATTTAATATAT-AATTAAAATA-TACTAATTAATCTAAACCCTAAACTCTAACCTAACACTGA
1 TTATTTAATATATAAATTAAAA-AGTACTAATTAATCTAAACCCTAAACCCTAACCTGACCCTGA
41914763 AT
65 AT
41914765 TTATAAACCC
Statistics
Matches: 219, Mismatches: 23, Indels: 18
0.84 0.09 0.07
Matches are distributed among these distances:
89 48 0.22
90 64 0.29
91 30 0.14
94 1 0.00
95 36 0.16
96 8 0.04
97 32 0.15
ACGTcount: A:0.43, C:0.26, G:0.03, T:0.29
Consensus pattern (89 bp):
TTATTTAATATATAAATTAAAAAGTACTAATTAATCTAAACCCTAAACCCTAACCTGACCCTGAA
TCCCTAACCCCTAACCCCTAAACT
Found at i:41914874 original size:14 final size:15
Alignment explanation
Indices: 41914855--41914887 Score: 59
Period size: 14 Copynumber: 2.3 Consensus size: 15
41914845 CTTAAACCAG
41914855 AATCCCTAA-TCCAT
1 AATCCCTAATTCCAT
41914869 AATCCCTAATTCCAT
1 AATCCCTAATTCCAT
41914884 AATC
1 AATC
41914888 TATAAAACTT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 9 0.50
15 9 0.50
ACGTcount: A:0.36, C:0.33, G:0.00, T:0.30
Consensus pattern (15 bp):
AATCCCTAATTCCAT
Found at i:41916674 original size:114 final size:114
Alignment explanation
Indices: 41916351--41916745 Score: 551
Period size: 113 Copynumber: 3.5 Consensus size: 114
41916341 NNNNNNNNNN
* * * * *
41916351 AACGGCGTCGTTGTGCTTAGGTCTTTTTGCGGTGCTTTCCCAAAAACGCCGCTAAAGCCCTAAGC
1 AACGGCGTCGTTGGGCTTAGGTTTTTTTGCGGCGCTTTCTCAAAAACGCCGCTAAAGCCCTGAGC
* *
41916416 ATTAGCGACGCTTACTTAAAAATGCCACTAAATCCCCGAAAGCTCAGAA
66 ATTAGCGGCGCTTACTTAAAAACGCCACTAAATCCCCGAAAGCTCAGAA
* * * *
41916465 AACGGTGTTGTTGGGCTTAGGTATTTTTGCGGCGC-TTCTCAAAAACGCCGCTAAAGACCTGAGC
1 AACGGCGTCGTTGGGCTTAGGTTTTTTTGCGGCGCTTTCTCAAAAACGCCGCTAAAGCCCTGAGC
* * *
41916529 ATTAGCAGCGCTTACCTAAAAACGCCACTAAATCCCCGAAATCTCAGAA
66 ATTAGCGGCGCTTACTTAAAAACGCCACTAAATCCCCGAAAGCTCAGAA
* * * *
41916578 GACGGCGTTGTTGGGCTTAGATTTTTTTGTGGCGCTTTCTCAAAAACGCCGCTAAAGCCCTGAGC
1 AACGGCGTCGTTGGGCTTAGGTTTTTTTGCGGCGCTTTCTCAAAAACGCCGCTAAAGCCCTGAGC
* * *
41916643 ATTAGCGGCGCTTTCTTAAAAACGCCGCTAAATCCCCGAAAGCTCCGAA
66 ATTAGCGGCGCTTACTTAAAAACGCCACTAAATCCCCGAAAGCTCAGAA
* * **
41916692 AACGGCGTCGTTGGGCTTAGG-TATTTTGCGGTGCTTTCTGGAAAACGCCGCTAA
1 AACGGCGTCGTTGGGCTTAGGTTTTTTTGCGGCGCTTTCTCAAAAACGCCGCTAA
41916746 TGCTTATTTT
Statistics
Matches: 247, Mismatches: 33, Indels: 3
0.87 0.12 0.01
Matches are distributed among these distances:
113 128 0.52
114 119 0.48
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.26
Consensus pattern (114 bp):
AACGGCGTCGTTGGGCTTAGGTTTTTTTGCGGCGCTTTCTCAAAAACGCCGCTAAAGCCCTGAGC
ATTAGCGGCGCTTACTTAAAAACGCCACTAAATCCCCGAAAGCTCAGAA
Found at i:41916923 original size:2 final size:2
Alignment explanation
Indices: 41916916--41916940 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
41916906 CGAATACATT
41916916 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
41916941 CTTTATACTA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:41922939 original size:51 final size:51
Alignment explanation
Indices: 41922811--41923005 Score: 227
Period size: 51 Copynumber: 3.8 Consensus size: 51
41922801 GTGAAAGTGA
* *
41922811 TGGTCACGTGTGTAGTACTATGTGCAGGCAACTACGTGTACCAGAAT-G-AT
1 TGGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACC-GAATAGCAT
* * * * * *
41922861 AGGTCGCATGTGTAGTACTATGTGCAGGCCACTATGCGTACCGAATAGCTT
1 TGGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCGAATAGCAT
* *
41922912 TGATCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACC-AGATAGCGA-
1 TGGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCGA-ATAGC-AT
* *
41922963 TGGTCACATGTGTAGTACTATGTGCAGGCTACTATGTGAACCG
1 TGGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCG
41923006 GTATCATTAA
Statistics
Matches: 121, Mismatches: 19, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
49 4 0.03
50 38 0.31
51 79 0.65
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (51 bp):
TGGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCGAATAGCAT
Found at i:41923037 original size:101 final size:100
Alignment explanation
Indices: 41922816--41923005 Score: 274
Period size: 101 Copynumber: 1.9 Consensus size: 100
41922806 AGTGATGGTC
* *
41922816 ACGTGTGTAGTACTATGTGCAGGCAACTACGTGTACCAGAATGATAGGTCGCATGTGTAGTACTA
1 ACGTGTGTA-TACTATGTGCAGGCAACTACGTGTACCAGAACGATAGGTCACATGTGTAGTACTA
* *
41922881 TGTGCAGGCCACTATGCGTACCGAATAGCTTTGATC
65 TGTGCAGGCCACTATGCGAACCGAATAGCTTTGATA
*
41922917 ACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCAGATAGCGAT-GGTCACATGTGTAGTAC
1 ACGTGTGTA-TACTATGTGCAGGCAACTACGTGTACCAGA-A-CGATAGGTCACATGTGTAGTAC
* *
41922981 TATGTGCAGGCTACTATGTGAACCG
63 TATGTGCAGGCCACTATGCGAACCG
41923006 GTATCATTAA
Statistics
Matches: 81, Mismatches: 6, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
101 39 0.48
102 39 0.48
103 3 0.04
ACGTcount: A:0.25, C:0.19, G:0.27, T:0.28
Consensus pattern (100 bp):
ACGTGTGTATACTATGTGCAGGCAACTACGTGTACCAGAACGATAGGTCACATGTGTAGTACTAT
GTGCAGGCCACTATGCGAACCGAATAGCTTTGATA
Found at i:41923504 original size:154 final size:154
Alignment explanation
Indices: 41923315--41923624 Score: 602
Period size: 154 Copynumber: 2.0 Consensus size: 154
41923305 CCAAAAATGG
41923315 TGGAAATTGAATTAGATAGTGAATAAGATATGAAATGAAATATTAATGAGTCTATTTTTACATAA
1 TGGAAATTGAATTAGATAGTGAATAAGATATGAAATGAAATATTAATGAGTCTATTTTTACATAA
*
41923380 AAGAAACAGAGCAAGTAAAAGAGTTATATATTTTGCGATATTTGAATTTTAGTGAGGCAGGGTCG
66 AAGAAACAGAGCAAGCAAAAGAGTTATATATTTTGCGATATTTGAATTTTAGTGAGGCAGGGTCG
41923445 GATTGATTTCGGAATCCCCTACTT
131 GATTGATTTCGGAATCCCCTACTT
41923469 TGGAAATTGAATTAGATAGTGAATAAGATATGAAATGAAATATTAATGAGTCTATTTTTACATAA
1 TGGAAATTGAATTAGATAGTGAATAAGATATGAAATGAAATATTAATGAGTCTATTTTTACATAA
*
41923534 AAGAAACAGAGTAAGCAAAAGAGTTATATATTTTGCGATATTTGAATTTTAGTGAGGCAGGGTCG
66 AAGAAACAGAGCAAGCAAAAGAGTTATATATTTTGCGATATTTGAATTTTAGTGAGGCAGGGTCG
41923599 GATTGATTTCGGAATCCCCTACTT
131 GATTGATTTCGGAATCCCCTACTT
41923623 TG
1 TG
41923625 ACTTTGGAAA
Statistics
Matches: 154, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
154 154 1.00
ACGTcount: A:0.37, C:0.08, G:0.21, T:0.33
Consensus pattern (154 bp):
TGGAAATTGAATTAGATAGTGAATAAGATATGAAATGAAATATTAATGAGTCTATTTTTACATAA
AAGAAACAGAGCAAGCAAAAGAGTTATATATTTTGCGATATTTGAATTTTAGTGAGGCAGGGTCG
GATTGATTTCGGAATCCCCTACTT
Found at i:41925635 original size:13 final size:15
Alignment explanation
Indices: 41925608--41925639 Score: 50
Period size: 13 Copynumber: 2.3 Consensus size: 15
41925598 CAAACAAAAG
41925608 AAAATTAGAATTTAA
1 AAAATTAGAATTTAA
41925623 AAAATTA-AA-TTAA
1 AAAATTAGAATTTAA
41925636 AAAA
1 AAAA
41925640 CTATTAAAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
13 8 0.47
14 2 0.12
15 7 0.41
ACGTcount: A:0.69, C:0.00, G:0.03, T:0.28
Consensus pattern (15 bp):
AAAATTAGAATTTAA
Found at i:41925669 original size:22 final size:22
Alignment explanation
Indices: 41925623--41925669 Score: 58
Period size: 22 Copynumber: 2.1 Consensus size: 22
41925613 TAGAATTTAA
* * * *
41925623 AAAATTAAATTAAAAAACTATT
1 AAAATAAAAATAAAAAACGACT
41925645 AAAATAAAAATAAAAAACGACT
1 AAAATAAAAATAAAAAACGACT
41925667 AAA
1 AAA
41925670 TTAATATAAA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.70, C:0.06, G:0.02, T:0.21
Consensus pattern (22 bp):
AAAATAAAAATAAAAAACGACT
Found at i:41929142 original size:27 final size:27
Alignment explanation
Indices: 41929097--41929149 Score: 70
Period size: 27 Copynumber: 2.0 Consensus size: 27
41929087 TCGACCTTCA
* *
41929097 AATTTTTTTTAACCGTTAACCGAACCG
1 AATTTTTTTTAAACATTAACCGAACCG
* *
41929124 AATTTTTTTTAAATATTAATCGAACC
1 AATTTTTTTTAAACATTAACCGAACC
41929150 AAAAATTTTT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.34, C:0.17, G:0.08, T:0.42
Consensus pattern (27 bp):
AATTTTTTTTAAACATTAACCGAACCG
Found at i:41929930 original size:13 final size:13
Alignment explanation
Indices: 41929908--41929937 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
41929898 TTGTTAGAGA
*
41929908 TTTAGTCTTTAGT
1 TTTAGACTTTAGT
41929921 TTTAGACTTTAGT
1 TTTAGACTTTAGT
41929934 TTTA
1 TTTA
41929938 TTGGATTGGT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.20, C:0.07, G:0.13, T:0.60
Consensus pattern (13 bp):
TTTAGACTTTAGT
Found at i:41929991 original size:44 final size:44
Alignment explanation
Indices: 41929923--41930085 Score: 245
Period size: 44 Copynumber: 3.5 Consensus size: 44
41929913 TCTTTAGTTT
*
41929923 TAGACTTTAGTTTTATTGGATTGGTAAATGGTAATTGGGTTTGGG
1 TAGACTTTAG-TTTATTGGGTTGGTAAATGGTAATTGGGTTTGGG
41929968 TAGACTTTAGTTTATTGGGTTGGTAAATGGTAATTGGGTTTGGG
1 TAGACTTTAGTTTATTGGGTTGGTAAATGGTAATTGGGTTTGGG
41930012 TAGACTTTAGTTTATTGGGTTGGTACTTGGTAAATGGTAATTGGGTTTGGG
1 TAGACTTTAGTTTATT--G--GG---TTGGTAAATGGTAATTGGGTTTGGG
41930063 TAGACTTTAGTTTATTGGGTTGG
1 TAGACTTTAGTTTATTGGGTTGG
41930086 GTAATTGGGT
Statistics
Matches: 110, Mismatches: 1, Indels: 15
0.87 0.01 0.12
Matches are distributed among these distances:
44 53 0.48
45 10 0.09
46 1 0.01
47 2 0.02
48 2 0.02
49 1 0.01
51 41 0.37
ACGTcount: A:0.20, C:0.03, G:0.33, T:0.44
Consensus pattern (44 bp):
TAGACTTTAGTTTATTGGGTTGGTAAATGGTAATTGGGTTTGGG
Found at i:41930042 original size:51 final size:51
Alignment explanation
Indices: 41929987--41930085 Score: 198
Period size: 51 Copynumber: 1.9 Consensus size: 51
41929977 GTTTATTGGG
41929987 TTGGTAAATGGTAATTGGGTTTGGGTAGACTTTAGTTTATTGGGTTGGTAC
1 TTGGTAAATGGTAATTGGGTTTGGGTAGACTTTAGTTTATTGGGTTGGTAC
41930038 TTGGTAAATGGTAATTGGGTTTGGGTAGACTTTAGTTTATTGGGTTGG
1 TTGGTAAATGGTAATTGGGTTTGGGTAGACTTTAGTTTATTGGGTTGG
41930086 GTAATTGGGT
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
51 48 1.00
ACGTcount: A:0.19, C:0.03, G:0.34, T:0.43
Consensus pattern (51 bp):
TTGGTAAATGGTAATTGGGTTTGGGTAGACTTTAGTTTATTGGGTTGGTAC
Found at i:41940017 original size:51 final size:51
Alignment explanation
Indices: 41939922--41940019 Score: 133
Period size: 51 Copynumber: 1.9 Consensus size: 51
41939912 ATGTGTCAAT
* * * ***
41939922 TTGGTCTTGATTTAATAAATTTAGCCCACAACATTTATGTATTTTGTTAAC
1 TTGGTCCTAATTTAACAAATTTAGCCCACAACATTTACCCATTTTGTTAAC
*
41939973 TTGGTCCTAATTTAACAAATTTAGCCCATAACATTTACCCATTTTGT
1 TTGGTCCTAATTTAACAAATTTAGCCCACAACATTTACCCATTTTGT
41940020 CAACATTTAC
Statistics
Matches: 40, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
51 40 1.00
ACGTcount: A:0.30, C:0.17, G:0.10, T:0.43
Consensus pattern (51 bp):
TTGGTCCTAATTTAACAAATTTAGCCCACAACATTTACCCATTTTGTTAAC
Found at i:41954845 original size:28 final size:28
Alignment explanation
Indices: 41954791--41954882 Score: 105
Period size: 28 Copynumber: 3.2 Consensus size: 28
41954781 TTTAATTAAT
41954791 TTTTTAAAATTTAAAAAATTATAAAAAATA
1 TTTTTAAAA-TT-AAAAATTATAAAAAATA
* * *
41954821 TTTTTAAAATTAAAAATCATTAAAATTA
1 TTTTTAAAATTAAAAATTATAAAAAATA
*
41954849 -TTATAAAATTATAAAATTATAAAAAATA
1 TTTTTAAAATTA-AAAATTATAAAAAATA
*
41954877 TATTTA
1 TTTTTA
41954883 TATTTTTTAA
Statistics
Matches: 51, Mismatches: 9, Indels: 5
0.78 0.14 0.08
Matches are distributed among these distances:
27 10 0.20
28 27 0.53
29 5 0.10
30 9 0.18
ACGTcount: A:0.58, C:0.01, G:0.00, T:0.41
Consensus pattern (28 bp):
TTTTTAAAATTAAAAATTATAAAAAATA
Found at i:41954851 original size:19 final size:18
Alignment explanation
Indices: 41954829--41954875 Score: 58
Period size: 19 Copynumber: 2.5 Consensus size: 18
41954819 TATTTTTAAA
41954829 ATTAAAAATCATTAAAATT
1 ATTAAAAATCA-TAAAATT
*
41954848 ATTATAAAATTATAAAATT
1 ATTA-AAAATCATAAAATT
*
41954867 ATAAAAAAT
1 ATTAAAAAT
41954876 ATATTTATAT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
18 5 0.20
19 14 0.56
20 6 0.24
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.36
Consensus pattern (18 bp):
ATTAAAAATCATAAAATT
Found at i:41954861 original size:8 final size:8
Alignment explanation
Indices: 41954848--41954872 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
41954838 CATTAAAATT
41954848 ATTATAAA
1 ATTATAAA
41954856 ATTATAAA
1 ATTATAAA
41954864 ATTATAAA
1 ATTATAAA
41954872 A
1 A
41954873 AATATATTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (8 bp):
ATTATAAA
Found at i:41959908 original size:57 final size:57
Alignment explanation
Indices: 41959839--41959961 Score: 158
Period size: 57 Copynumber: 2.1 Consensus size: 57
41959829 CATTATTATT
*
41959839 TCCATTTCCATTTTCATTTTGAACAAAACCACATTCATTTCCAAATGATTTC-ATTTC
1 TCCATTTCCATTTTCATTTTGAACAAAACCACAATCATTTCCAAATG-TTTCAATTTC
* * * * **
41959896 TCCATTTTCATTTTTATTTTGGAGAAAACCTTAATCATTTCCAAATGTTTCATATTTC
1 TCCATTTCCATTTTCATTTTGAACAAAACCACAATCATTTCCAAATGTTTCA-ATTTC
41959954 TCCATTTC
1 TCCATTTC
41959962 TATTCATTTA
Statistics
Matches: 56, Mismatches: 8, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
56 4 0.07
57 40 0.71
58 12 0.21
ACGTcount: A:0.28, C:0.22, G:0.05, T:0.46
Consensus pattern (57 bp):
TCCATTTCCATTTTCATTTTGAACAAAACCACAATCATTTCCAAATGTTTCAATTTC
Found at i:41965727 original size:21 final size:21
Alignment explanation
Indices: 41965703--41965751 Score: 89
Period size: 21 Copynumber: 2.3 Consensus size: 21
41965693 TCGGGTTGAT
41965703 GTCGCGACATCAAGGTTCTAG
1 GTCGCGACATCAAGGTTCTAG
41965724 GTCGCGACATCAAGGTTCTAG
1 GTCGCGACATCAAGGTTCTAG
*
41965745 GTAGCGA
1 GTCGCGA
41965752 TGCCACTCAT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.24, C:0.22, G:0.31, T:0.22
Consensus pattern (21 bp):
GTCGCGACATCAAGGTTCTAG
Found at i:41966632 original size:18 final size:18
Alignment explanation
Indices: 41966609--41966652 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 18
41966599 CATGTTAAAC
*
41966609 CAATTCATATCATC-TTTT
1 CAATTCAAAT-ATCATTTT
41966627 CAATTCAAATATCATTTT
1 CAATTCAAATATCATTTT
41966645 CAAGTTCA
1 CAA-TTCA
41966653 CATTTATTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
17 3 0.13
18 16 0.70
19 4 0.17
ACGTcount: A:0.34, C:0.20, G:0.02, T:0.43
Consensus pattern (18 bp):
CAATTCAAATATCATTTT
Found at i:41973639 original size:18 final size:19
Alignment explanation
Indices: 41973605--41973640 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
41973595 GCAAATGAAT
*
41973605 CATTTCTCATTTTCATTTC
1 CATTTCTCATTTACATTTC
41973624 CATTTC-CATTTACATTT
1 CATTTCTCATTTACATTT
41973641 TGAGAAAACC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 10 0.62
19 6 0.38
ACGTcount: A:0.19, C:0.25, G:0.00, T:0.56
Consensus pattern (19 bp):
CATTTCTCATTTACATTTC
Found at i:41976512 original size:38 final size:38
Alignment explanation
Indices: 41976470--41976547 Score: 138
Period size: 38 Copynumber: 2.1 Consensus size: 38
41976460 CAAGAGAAAG
41976470 AGTATCATGTCATTTGAATCTTTTATGATCAATACTTT
1 AGTATCATGTCATTTGAATCTTTTATGATCAATACTTT
* *
41976508 AGTATCATGTCATTTGACTCTTTTTTGATCAATACTTT
1 AGTATCATGTCATTTGAATCTTTTATGATCAATACTTT
41976546 AG
1 AG
41976548 CTAATTCCCA
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.27, C:0.14, G:0.12, T:0.47
Consensus pattern (38 bp):
AGTATCATGTCATTTGAATCTTTTATGATCAATACTTT
Found at i:41978422 original size:43 final size:44
Alignment explanation
Indices: 41978356--41978472 Score: 143
Period size: 44 Copynumber: 2.7 Consensus size: 44
41978346 AGCTCGTACA
*
41978356 ATGCCAACGTCCCAGAC-GTGGTCTTACATGT-AA-TCAAACATCG
1 ATGCCAACGTCCCAGACAG-GGTCTTACACGTAAATTCAAA-ATCG
*
41978399 ATGCC-ACTGTCCCAGACAGGGTCTTACACGTAAATTCCAAATCG
1 ATGCCAAC-GTCCCAGACAGGGTCTTACACGTAAATTCAAAATCG
* *
41978443 ATGCCAACATCCCAGACATGGTCTTACACG
1 ATGCCAACGTCCCAGACAGGGTCTTACACG
41978473 ATAACTCATA
Statistics
Matches: 65, Mismatches: 4, Indels: 9
0.83 0.05 0.12
Matches are distributed among these distances:
42 2 0.03
43 25 0.38
44 32 0.49
45 6 0.09
ACGTcount: A:0.30, C:0.30, G:0.18, T:0.22
Consensus pattern (44 bp):
ATGCCAACGTCCCAGACAGGGTCTTACACGTAAATTCAAAATCG
Found at i:41981998 original size:20 final size:20
Alignment explanation
Indices: 41981973--41982011 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 20
41981963 TTACTTCTTC
41981973 TTTACTTACTCT-CTTACTTG
1 TTTACTTACT-TGCTTACTTG
41981993 TTTACTTACTTGCTTACTT
1 TTTACTTACTTGCTTACTT
41982012 AAATAACTCA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 1 0.06
20 17 0.94
ACGTcount: A:0.15, C:0.23, G:0.05, T:0.56
Consensus pattern (20 bp):
TTTACTTACTTGCTTACTTG
Found at i:41982419 original size:50 final size:52
Alignment explanation
Indices: 41982212--41982412 Score: 146
Period size: 49 Copynumber: 3.9 Consensus size: 52
41982202 TGATAATAAC
* * * * *
41982212 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGA-TGT--TTCTTGTA
1 ATGCCAATGCCATATCCCAGACATGGTCTTACATGGGACTCTCATCCTTATA
* * * * * * *
41982261 CTGCCAATGCCGTATCCCATATATGGTCTTACATGGGAGT-TC-T-CATATCG
1 ATGCCAATGCCATATCCCAGACATGGTCTTACATGGGACTCTCATCCTTAT-A
* * * * *
41982311 GTGCCTATGCCATCTCCTAGACATGGTCTTACGTGGGACCTCTCATAACCTTAATA
1 ATGCCAATGCCATATCCCAGACATGGTCTTACATGGGA-CTCTCAT--CCTT-ATA
*
41982367 ATGCCAATGCCATATCCCATACATGGTCTTACATGGGA-TCTCATCC
1 ATGCCAATGCCATATCCCAGACATGGTCTTACATGGGACTCTCATCC
41982413 CTTAATGTCA
Statistics
Matches: 116, Mismatches: 26, Indels: 17
0.73 0.16 0.11
Matches are distributed among these distances:
49 36 0.31
50 32 0.28
51 1 0.01
52 4 0.03
53 1 0.01
54 6 0.05
56 34 0.29
57 2 0.02
ACGTcount: A:0.24, C:0.27, G:0.19, T:0.30
Consensus pattern (52 bp):
ATGCCAATGCCATATCCCAGACATGGTCTTACATGGGACTCTCATCCTTATA
Found at i:41988556 original size:25 final size:25
Alignment explanation
Indices: 41988463--41988581 Score: 87
Period size: 25 Copynumber: 4.7 Consensus size: 25
41988453 AATTCTTATT
* *
41988463 CGGGAATGCTTATACGAGCACATA-AA
1 CGGGAA-GCTCATCCGAGC-CATATAA
* *
41988489 CGGGAAGCTCTTTCGAGCCATATAA
1 CGGGAAGCTCATCCGAGCCATATAA
* * ** *
41988514 CGGGAAACCCATGTGAGCCATGTAA
1 CGGGAAGCTCATCCGAGCCATATAA
**
41988539 CGGGAAGCTCATCCGAGCTGTATAA
1 CGGGAAGCTCATCCGAGCCATATAA
** *
41988564 TAGGAAGCTCATACGAGC
1 CGGGAAGCTCATCCGAGC
41988582 TAATATCAGG
Statistics
Matches: 73, Mismatches: 19, Indels: 3
0.77 0.20 0.03
Matches are distributed among these distances:
24 4 0.05
25 63 0.86
26 6 0.08
ACGTcount: A:0.32, C:0.23, G:0.26, T:0.19
Consensus pattern (25 bp):
CGGGAAGCTCATCCGAGCCATATAA
Found at i:41988597 original size:24 final size:25
Alignment explanation
Indices: 41988541--41988597 Score: 73
Period size: 25 Copynumber: 2.3 Consensus size: 25
41988531 CCATGTAACG
* *
41988541 GGAAGCTCATCCGAGCTGTATAATA
1 GGAAGCTCATACGAGCTGAATAATA
41988566 GGAAGCTCATACGAGCT-AAT-ATCA
1 GGAAGCTCATACGAGCTGAATAAT-A
41988590 GGAAGCTC
1 GGAAGCTC
41988598 CAGAGAGCCA
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
23 2 0.07
24 11 0.38
25 16 0.55
ACGTcount: A:0.33, C:0.21, G:0.25, T:0.21
Consensus pattern (25 bp):
GGAAGCTCATACGAGCTGAATAATA
Found at i:41988774 original size:25 final size:24
Alignment explanation
Indices: 41988746--41988792 Score: 76
Period size: 25 Copynumber: 1.9 Consensus size: 24
41988736 GTAATTAACG
*
41988746 GGAAGCTCATGAGAGCCATATATTA
1 GGAAGCTCAAGAGAGCCA-ATATTA
41988771 GGAAGCTCAAGAGAGCCAATAT
1 GGAAGCTCAAGAGAGCCAATAT
41988793 CGGGATGCTC
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
24 4 0.19
25 17 0.81
ACGTcount: A:0.38, C:0.17, G:0.26, T:0.19
Consensus pattern (24 bp):
GGAAGCTCAAGAGAGCCAATATTA
Found at i:41988802 original size:24 final size:25
Alignment explanation
Indices: 41988744--41988802 Score: 75
Period size: 25 Copynumber: 2.4 Consensus size: 25
41988734 GAGTAATTAA
*
41988744 CGGGAAGCTCATGAGAGCCATATAT
1 CGGGAAGCTCAAGAGAGCCATATAT
**
41988769 TAGGAAGCTCAAGAGAGCCA-ATAT
1 CGGGAAGCTCAAGAGAGCCATATAT
*
41988793 CGGGATGCTC
1 CGGGAAGCTC
41988803 TTGCGAGCTG
Statistics
Matches: 28, Mismatches: 6, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
24 11 0.39
25 17 0.61
ACGTcount: A:0.32, C:0.20, G:0.29, T:0.19
Consensus pattern (25 bp):
CGGGAAGCTCAAGAGAGCCATATAT
Found at i:41996203 original size:25 final size:25
Alignment explanation
Indices: 41996175--41996293 Score: 123
Period size: 25 Copynumber: 4.8 Consensus size: 25
41996165 AGCTCTTTTC
* **
41996175 AGCCATATAACGGGAAGCTCATGTG
1 AGCCATATAACAGGAAGCTCATCCG
* *
41996200 AGCCATGTAATAGGAAGCTCATCCG
1 AGCCATATAACAGGAAGCTCATCCG
**
41996225 AGCTGTATAACAGGAAGCTCATCCG
1 AGCCATATAACAGGAAGCTCATCCG
** *
41996250 AGCTGTATAACAGGAAGCTCATACG
1 AGCCATATAACAGGAAGCTCATCCG
* *
41996275 AGCTA-ATATCAGGAAGCTC
1 AGCCATATAACAGGAAGCTC
41996294 TGGAGAGCCA
Statistics
Matches: 82, Mismatches: 12, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
24 13 0.16
25 69 0.84
ACGTcount: A:0.34, C:0.22, G:0.24, T:0.20
Consensus pattern (25 bp):
AGCCATATAACAGGAAGCTCATCCG
Found at i:41996234 original size:50 final size:48
Alignment explanation
Indices: 41996180--41996320 Score: 140
Period size: 50 Copynumber: 2.9 Consensus size: 48
41996170 TTTTCAGCCA
* * *
41996180 TATAACGGGAAGCTCATGTGAGCCATGTAATAGGAAGCTCATCCGAGCT
1 TATAACAGGAAGCTCATGAGAGCCAT-TAATAGGAAGCTCATACGAGCT
** ** *
41996229 GTATAACAGGAAGCTCATCCGAGCTGTATAACAGGAAGCTCATACGAGCT
1 -TATAACAGGAAGCTCATGAGAGCCAT-TAATAGGAAGCTCATACGAGCT
* *
41996279 AATATCAGGAAGCTC-TGGAGAGCCATTAATTAGGAAGCTCAT
1 TATAACAGGAAGCTCAT-GAGAGCCATTAA-TAGGAAGCTCAT
41996321 GAAAAAGCCT
Statistics
Matches: 74, Mismatches: 15, Indels: 5
0.79 0.16 0.05
Matches are distributed among these distances:
48 4 0.05
49 29 0.39
50 41 0.55
ACGTcount: A:0.33, C:0.20, G:0.25, T:0.22
Consensus pattern (48 bp):
TATAACAGGAAGCTCATGAGAGCCATTAATAGGAAGCTCATACGAGCT
Found at i:41996526 original size:26 final size:24
Alignment explanation
Indices: 41996415--41996523 Score: 78
Period size: 24 Copynumber: 4.5 Consensus size: 24
41996405 ATCACAACCA
* *
41996415 ATCGGGATGCTCAAAAGAGCAATT
1 ATCGGGATGCTCAAGAGAGCAAAT
* * * * *
41996439 AACGAGAAGCTCGTAAGAG-CCACAT
1 ATCGGGATGCTC--AAGAGAGCAAAT
* *
41996464 ATCAGGAAGCTCAAGAGAGCAAAT
1 ATCGGGATGCTCAAGAGAGCAAAT
* *
41996488 ATCGGGATGCTCATGAGAGCTAAT
1 ATCGGGATGCTCAAGAGAGCAAAT
41996512 AAT-GGGATGCTC
1 -ATCGGGATGCTC
41996524 TCACGAGTTG
Statistics
Matches: 65, Mismatches: 16, Indels: 8
0.73 0.18 0.09
Matches are distributed among these distances:
23 5 0.08
24 42 0.65
25 14 0.22
26 4 0.06
ACGTcount: A:0.37, C:0.18, G:0.27, T:0.18
Consensus pattern (24 bp):
ATCGGGATGCTCAAGAGAGCAAAT
Found at i:41997042 original size:20 final size:19
Alignment explanation
Indices: 41997017--41997060 Score: 54
Period size: 20 Copynumber: 2.3 Consensus size: 19
41997007 AGCCTGTGTA
41997017 TTTCAT-AAGATTTAGAATTT
1 TTTCATGAA-ATTTAG-ATTT
*
41997037 TTTCATGAATTTTAGATTT
1 TTTCATGAAATTTAGATTT
41997056 TTTCA
1 TTTCA
41997061 ATTTAGTCCC
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
19 9 0.41
20 11 0.50
21 2 0.09
ACGTcount: A:0.30, C:0.07, G:0.09, T:0.55
Consensus pattern (19 bp):
TTTCATGAAATTTAGATTT
Found at i:41998873 original size:16 final size:16
Alignment explanation
Indices: 41998832--41998879 Score: 62
Period size: 16 Copynumber: 2.9 Consensus size: 16
41998822 GAAAGCAATT
41998832 AAAATAAAT-AAATAA
1 AAAATAAATCAAATAA
*
41998847 ATAAGATAAATCAAATAG
1 A-AA-ATAAATCAAATAA
41998865 AAAATAAATCAAATA
1 AAAATAAATCAAATA
41998880 TTAGAGCAAT
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
15 1 0.03
16 14 0.48
17 8 0.28
18 6 0.21
ACGTcount: A:0.71, C:0.04, G:0.04, T:0.21
Consensus pattern (16 bp):
AAAATAAATCAAATAA
Found at i:41998878 original size:5 final size:4
Alignment explanation
Indices: 41998833--41998879 Score: 51
Period size: 4 Copynumber: 11.2 Consensus size: 4
41998823 AAAGCAATTA
*
41998833 AAAT AAAT AAAT AAAT AAGAT AAAT CAAAT AGA- AAAT AAAT CAAAT A
1 AAAT AAAT AAAT AAAT AA-AT AAAT -AAAT AAAT AAAT AAAT -AAAT A
41998880 TTAGAGCAAT
Statistics
Matches: 37, Mismatches: 2, Indels: 8
0.79 0.04 0.17
Matches are distributed among these distances:
3 2 0.05
4 23 0.62
5 12 0.32
ACGTcount: A:0.70, C:0.04, G:0.04, T:0.21
Consensus pattern (4 bp):
AAAT
Found at i:41999906 original size:9 final size:9
Alignment explanation
Indices: 41999892--41999920 Score: 58
Period size: 9 Copynumber: 3.2 Consensus size: 9
41999882 ATCAATTTGT
41999892 ATATGAGAA
1 ATATGAGAA
41999901 ATATGAGAA
1 ATATGAGAA
41999910 ATATGAGAA
1 ATATGAGAA
41999919 AT
1 AT
41999921 GCAATGTAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.55, C:0.00, G:0.21, T:0.24
Consensus pattern (9 bp):
ATATGAGAA
Found at i:42004272 original size:16 final size:16
Alignment explanation
Indices: 42004251--42004282 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
42004241 TGTTATTGAT
42004251 CAGTGGTAGCTTCGGC
1 CAGTGGTAGCTTCGGC
42004267 CAGTGGTAGCTTCGGC
1 CAGTGGTAGCTTCGGC
42004283 TACATATCAG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.12, C:0.25, G:0.38, T:0.25
Consensus pattern (16 bp):
CAGTGGTAGCTTCGGC
Found at i:42004297 original size:23 final size:23
Alignment explanation
Indices: 42004267--42004363 Score: 149
Period size: 23 Copynumber: 4.2 Consensus size: 23
42004257 TAGCTTCGGC
42004267 CAGTGGTAGCTTCGGCTACATAT
1 CAGTGGTAGCTTCGGCTACATAT
* *
42004290 CAGTGGTAGCTTCGACTACATTT
1 CAGTGGTAGCTTCGGCTACATAT
* * *
42004313 CAGTGGAAGCTTCGGCTAAATTT
1 CAGTGGTAGCTTCGGCTACATAT
42004336 CAGTGGTAGCTTCGGCTACATAT
1 CAGTGGTAGCTTCGGCTACATAT
42004359 CAGTG
1 CAGTG
42004364 TGGCACTTAT
Statistics
Matches: 66, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
23 66 1.00
ACGTcount: A:0.23, C:0.21, G:0.26, T:0.31
Consensus pattern (23 bp):
CAGTGGTAGCTTCGGCTACATAT
Found at i:42004535 original size:38 final size:37
Alignment explanation
Indices: 42004493--42004565 Score: 103
Period size: 38 Copynumber: 1.9 Consensus size: 37
42004483 ATGTATGGAA
* *
42004493 TTGAATTGAATATTGACTTGAAAA-TGGAAAAGTGAATT
1 TTGAATTGAATAGTGA-TT-AAAAGTGAAAAAGTGAATT
42004531 TTGAATTGAATAGTGATTAAAAGTGAAAAAGTGAA
1 TTGAATTGAATAGTGATTAAAAGTGAAAAAGTGAA
42004566 ATTATGAAAA
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
36 4 0.12
37 13 0.41
38 15 0.47
ACGTcount: A:0.45, C:0.01, G:0.22, T:0.32
Consensus pattern (37 bp):
TTGAATTGAATAGTGATTAAAAGTGAAAAAGTGAATT
Found at i:42008317 original size:27 final size:27
Alignment explanation
Indices: 42008286--42008343 Score: 73
Period size: 27 Copynumber: 2.1 Consensus size: 27
42008276 AAAGGTTGTT
* *
42008286 AAATGATCGAAATA-CCCTCAAAGGGTA
1 AAATGACCAAAATACCCCT-AAAGGGTA
*
42008313 AAATGACCAAAATACCCCTAACGGGTA
1 AAATGACCAAAATACCCCTAAAGGGTA
42008340 AAAT
1 AAAT
42008344 TATCATTTTA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
27 23 0.85
28 4 0.15
ACGTcount: A:0.47, C:0.21, G:0.16, T:0.17
Consensus pattern (27 bp):
AAATGACCAAAATACCCCTAAAGGGTA
Found at i:42010025 original size:18 final size:18
Alignment explanation
Indices: 42010002--42010057 Score: 58
Period size: 18 Copynumber: 2.9 Consensus size: 18
42009992 TTTTATTACT
42010002 AGTGGTTTATCCACAATG
1 AGTGGTTTATCCACAATG
**
42010020 AGTGGTTCGTCCACAAAGATG
1 AGTGGTTTATCCAC--A-ATG
42010041 AGTGGTTTTATCCACAA
1 AGTGG-TTTATCCACAA
42010058 CGTAGTGTAA
Statistics
Matches: 30, Mismatches: 4, Indels: 7
0.73 0.10 0.17
Matches are distributed among these distances:
18 12 0.40
19 1 0.03
20 2 0.07
21 8 0.27
22 7 0.23
ACGTcount: A:0.29, C:0.18, G:0.23, T:0.30
Consensus pattern (18 bp):
AGTGGTTTATCCACAATG
Found at i:42012232 original size:26 final size:27
Alignment explanation
Indices: 42012173--42012226 Score: 74
Period size: 27 Copynumber: 2.0 Consensus size: 27
42012163 GGACATGTTG
* *
42012173 AATTCTAGCATGCATTCGGACACTTAAA
1 AATTC-AGCATACATTCGAACACTTAAA
42012201 AATTCAGCATACATTCGAACA-TTAAA
1 AATTCAGCATACATTCGAACACTTAAA
42012227 TTTTCACTAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 5 0.21
27 14 0.58
28 5 0.21
ACGTcount: A:0.41, C:0.20, G:0.11, T:0.28
Consensus pattern (27 bp):
AATTCAGCATACATTCGAACACTTAAA
Found at i:42013714 original size:58 final size:58
Alignment explanation
Indices: 42013646--42013761 Score: 223
Period size: 58 Copynumber: 2.0 Consensus size: 58
42013636 TCAAAAGTAG
*
42013646 ATCACAAAATCGTTGGGTGTGATTTAATAACGGAATTTACGGATTCGATTTATGGAAA
1 ATCACAAAATCGTTGGGTGTGATTTAATAACAGAATTTACGGATTCGATTTATGGAAA
42013704 ATCACAAAATCGTTGGGTGTGATTTAATAACAGAATTTACGGATTCGATTTATGGAAA
1 ATCACAAAATCGTTGGGTGTGATTTAATAACAGAATTTACGGATTCGATTTATGGAAA
42013762 CGAGATCTCG
Statistics
Matches: 57, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
58 57 1.00
ACGTcount: A:0.35, C:0.10, G:0.22, T:0.33
Consensus pattern (58 bp):
ATCACAAAATCGTTGGGTGTGATTTAATAACAGAATTTACGGATTCGATTTATGGAAA
Found at i:42014412 original size:21 final size:21
Alignment explanation
Indices: 42014388--42014428 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
42014378 ACTAGCCAAC
*
42014388 TTATTTGAAAATAATTAAATT
1 TTATTTGAAAATAAGTAAATT
*
42014409 TTATTTTAAAATAAGTAAAT
1 TTATTTGAAAATAAGTAAAT
42014429 GTTTTAAATT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.49, C:0.00, G:0.05, T:0.46
Consensus pattern (21 bp):
TTATTTGAAAATAAGTAAATT
Found at i:42025220 original size:18 final size:18
Alignment explanation
Indices: 42025197--42025231 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
42025187 GAAACTCTAT
42025197 ATCCTTC-AGGGATTTTAA
1 ATCCTTCTA-GGATTTTAA
42025215 ATCCTTCTAGGATTTTA
1 ATCCTTCTAGGATTTTA
42025232 TATAAATTTC
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 15 0.94
19 1 0.06
ACGTcount: A:0.26, C:0.17, G:0.14, T:0.43
Consensus pattern (18 bp):
ATCCTTCTAGGATTTTAA
Found at i:42026730 original size:28 final size:28
Alignment explanation
Indices: 42026690--42026891 Score: 284
Period size: 28 Copynumber: 7.2 Consensus size: 28
42026680 CAGTGATAGT
42026690 ACAGTGTGGGCCTTAGCCCAATACAATA
1 ACAGTGTGGGCCTTAGCCCAATACAATA
* *
42026718 ACAGTATGGGCCTTAGCCCAATACAGTA
1 ACAGTGTGGGCCTTAGCCCAATACAATA
42026746 ACAGTGTGGGCCTTAGCCCAATACAGA-A
1 ACAGTGTGGGCCTTAGCCCAATACA-ATA
* * *
42026774 TCAGTGTGGGCCTTAACCCAATATGAA-A
1 ACAGTGTGGGCCTTAGCCCAATA-CAATA
*
42026802 TCAGTGTGGGCCTTAGCCCAATACAATA
1 ACAGTGTGGGCCTTAGCCCAATACAATA
42026830 ACAGTGTGGGCCTTAGCCCAATACAA-A
1 ACAGTGTGGGCCTTAGCCCAATACAATA
* *
42026857 ATCAGTGTGGTCCTTAGCCCAATACAGTA
1 A-CAGTGTGGGCCTTAGCCCAATACAATA
42026886 ACAGTG
1 ACAGTG
42026892 CAGTGCAATA
Statistics
Matches: 157, Mismatches: 12, Indels: 10
0.88 0.07 0.06
Matches are distributed among these distances:
27 4 0.03
28 150 0.96
29 3 0.02
ACGTcount: A:0.31, C:0.24, G:0.22, T:0.22
Consensus pattern (28 bp):
ACAGTGTGGGCCTTAGCCCAATACAATA
Found at i:42026891 original size:84 final size:84
Alignment explanation
Indices: 42026691--42026891 Score: 314
Period size: 84 Copynumber: 2.4 Consensus size: 84
42026681 AGTGATAGTA
* * *
42026691 CAGTGTGGGCCTTAGCCCAATACAATAACAGTATGGGCCTTAGCCCAATACAGTAACAGTGTGGG
1 CAGTGTGGGCCTTAGCCCAATACAGTAACAGTGTGGGCCTTAGCCCAATACAATAACAGTGTGGG
*
42026756 CCTTAGCCCAATACAGAAT
66 CCTTAGCCCAATACAAAAT
* * *
42026775 CAGTGTGGGCCTTAACCCAATA-TGAAATCAGTGTGGGCCTTAGCCCAATACAATAACAGTGTGG
1 CAGTGTGGGCCTTAGCCCAATACAGTAA-CAGTGTGGGCCTTAGCCCAATACAATAACAGTGTGG
42026839 GCCTTAGCCCAATACAAAAT
65 GCCTTAGCCCAATACAAAAT
*
42026859 CAGTGTGGTCCTTAGCCCAATACAGTAACAGTG
1 CAGTGTGGGCCTTAGCCCAATACAGTAACAGTG
42026892 CAGTGCAATA
Statistics
Matches: 104, Mismatches: 11, Indels: 4
0.87 0.09 0.03
Matches are distributed among these distances:
83 2 0.02
84 99 0.95
85 3 0.03
ACGTcount: A:0.31, C:0.24, G:0.22, T:0.22
Consensus pattern (84 bp):
CAGTGTGGGCCTTAGCCCAATACAGTAACAGTGTGGGCCTTAGCCCAATACAATAACAGTGTGGG
CCTTAGCCCAATACAAAAT
Found at i:42027327 original size:27 final size:27
Alignment explanation
Indices: 42027310--42027573 Score: 334
Period size: 27 Copynumber: 9.8 Consensus size: 27
42027300 TATAACAGTT
* *
42027310 ATTTTATCCTATGGGGGTATTTTGGTC
1 ATTTTACCCTATGGGGGTATTTCGGTC
*
42027337 ATTTTACCCTATGGGGGTATTTCGATC
1 ATTTTACCCTATGGGGGTATTTCGGTC
* *
42027364 ATTTTACCCTA-AGGGGTATTTCGGTT
1 ATTTTACCCTATGGGGGTATTTCGGTC
* *
42027390 ATTTTACCCTATGGGGGTATTTTGATC
1 ATTTTACCCTATGGGGGTATTTCGGTC
* *
42027417 ATTTTACCCTATAGGGGTATTCCGGTC
1 ATTTTACCCTATGGGGGTATTTCGGTC
*
42027444 ATTTTACCCTATGGGGGTATTCCGGTC
1 ATTTTACCCTATGGGGGTATTTCGGTC
*
42027471 ATTTTACCCTATGGGGGTA-TTCTTGTC
1 ATTTTACCCTATGGGGGTATTTC-GGTC
*
42027498 ATTCTACCCTATGGGGGTATTTCGGTC
1 ATTTTACCCTATGGGGGTATTTCGGTC
* * * *
42027525 ATTCTACCCTATAGGGGTATTTTGGTT
1 ATTTTACCCTATGGGGGTATTTCGGTC
* **
42027552 ATTCTACCCTATAAGGGTATTT
1 ATTTTACCCTATGGGGGTATTT
42027574 AGGTGCAGAT
Statistics
Matches: 211, Mismatches: 23, Indels: 6
0.88 0.10 0.03
Matches are distributed among these distances:
26 25 0.12
27 183 0.87
28 3 0.01
ACGTcount: A:0.18, C:0.18, G:0.23, T:0.42
Consensus pattern (27 bp):
ATTTTACCCTATGGGGGTATTTCGGTC
Found at i:42027506 original size:81 final size:80
Alignment explanation
Indices: 42027307--42027573 Score: 383
Period size: 81 Copynumber: 3.3 Consensus size: 80
42027297 GGGTATAACA
* *
42027307 GTTATTTTATCCTATGGGGGTATTTTGGTCATTTTACCCTATGGGGGTATTTCGATCATTTTACC
1 GTTATTTTACCCTATGGGGGTATTTT-GTCATTTTACCCTATGGGGGTATTTCGGTCATTTTACC
42027372 CTA-AGGGGTATTTCG
65 CTATAGGGGTATTTCG
* *
42027387 GTTATTTTACCCTATGGGGGTATTTTGATCATTTTACCCTATAGGGGTATTCCGGTCATTTTACC
1 GTTATTTTACCCTATGGGGGTATTTTG-TCATTTTACCCTATGGGGGTATTTCGGTCATTTTACC
* *
42027452 CTATGGGGGTATTCCG
65 CTATAGGGGTATTTCG
* * *
42027468 GTCATTTTACCCTATGGGGGTATTCTTGTCATTCTACCCTATGGGGGTATTTCGGTCATTCTACC
1 GTTATTTTACCCTATGGGGGTATT-TTGTCATTTTACCCTATGGGGGTATTTCGGTCATTTTACC
*
42027533 CTATAGGGGTATTTTG
65 CTATAGGGGTATTTCG
* **
42027549 GTTATTCTACCCTATAAGGGTATTT
1 GTTATTTTACCCTATGGGGGTATTT
42027574 AGGTGCAGAT
Statistics
Matches: 166, Mismatches: 18, Indels: 6
0.87 0.09 0.03
Matches are distributed among these distances:
79 1 0.01
80 63 0.38
81 99 0.60
82 3 0.02
ACGTcount: A:0.18, C:0.18, G:0.23, T:0.42
Consensus pattern (80 bp):
GTTATTTTACCCTATGGGGGTATTTTGTCATTTTACCCTATGGGGGTATTTCGGTCATTTTACCC
TATAGGGGTATTTCG
Found at i:42032530 original size:18 final size:18
Alignment explanation
Indices: 42032483--42032536 Score: 65
Period size: 18 Copynumber: 2.9 Consensus size: 18
42032473 TTTGGTTAAA
*
42032483 AATTAACTGAATTAACCG
1 AATTAACTGAATTAATCG
42032501 AATT-ACTTGAATTAATCG
1 AATTAAC-TGAATTAATCG
*
42032519 AATTAACCGAATTGAATC
1 AATTAACTGAATT-AATC
42032537 ACTACATAAT
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
17 2 0.06
18 23 0.74
19 6 0.19
ACGTcount: A:0.43, C:0.15, G:0.11, T:0.31
Consensus pattern (18 bp):
AATTAACTGAATTAATCG
Found at i:42035372 original size:56 final size:57
Alignment explanation
Indices: 42035293--42035581 Score: 313
Period size: 56 Copynumber: 5.1 Consensus size: 57
42035283 CAATTTTTCA
* * * * * *
42035293 ATAGCAT-AATAATGCTTACTTTGAGACACTGAAGCAACA-CTTTAATTTAATTTAGG
1 ATAGCATGAA-AATGCTCAATTTGAAACACTAAAACAACAGCTTTAATTTAATTTAAG
* * *
42035349 ATAGAAT-AATAATACTCAATTTGAAACA-TTAAACAACAGC-TTAATTTAATTTAAG
1 ATAGCATGAA-AATGCTCAATTTGAAACACTAAAACAACAGCTTTAATTTAATTTAAG
* * * * *
42035404 ACAGCATGAAAATGCTCAATTTGATACACTAAAAC-ACAAACTTTAATTCAATTTATG
1 ATAGCATGAAAATGCTCAATTTGAAACACTAAAACAAC-AGCTTTAATTTAATTTAAG
*
42035461 ATAGCATGAAAATGCTCAATTTGAAACACTAAAACAACAGC-TTGATTTAATTTAAG
1 ATAGCATGAAAATGCTCAATTTGAAACACTAAAACAACAGCTTTAATTTAATTTAAG
* * * * *
42035517 ACAGTATGAAAATGCTCAATTTGAAACACTCAAACAACAGCTTTAATTCAATTTATG
1 ATAGCATGAAAATGCTCAATTTGAAACACTAAAACAACAGCTTTAATTTAATTTAAG
*
42035574 ACAGCATG
1 ATAGCATG
42035582 CAAACAGTAA
Statistics
Matches: 197, Mismatches: 29, Indels: 13
0.82 0.12 0.05
Matches are distributed among these distances:
55 45 0.23
56 83 0.42
57 67 0.34
58 2 0.01
ACGTcount: A:0.43, C:0.15, G:0.11, T:0.30
Consensus pattern (57 bp):
ATAGCATGAAAATGCTCAATTTGAAACACTAAAACAACAGCTTTAATTTAATTTAAG
Found at i:42035527 original size:113 final size:113
Alignment explanation
Indices: 42035295--42035581 Score: 368
Period size: 113 Copynumber: 2.6 Consensus size: 113
42035285 ATTTTTCAAT
* * * * * * * *
42035295 AGCAT-AATAATGCTTACTTTGAGACACTGAAGCAAC-ACTTTAATTTAATTTAGGATAGAAT-A
1 AGCATGAA-AATGCTCAATTTGAAACACTAAAACAACAACTTTAATTCAATTTATGATAGCATGA
*
42035357 ATAATACTCAATTTGAAACATTAAACAACAGCTTAATTTAATTTAAGAC
65 ATAATACTCAATTTGAAACATAAAACAACAGCTTAATTTAATTTAAGAC
*
42035406 AGCATGAAAATGCTCAATTTGATACACTAAAAC-ACAAACTTTAATTCAATTTATGATAGCATGA
1 AGCATGAAAATGCTCAATTTGAAACACTAAAACAAC-AACTTTAATTCAATTTATGATAGCATGA
* *
42035470 A-AATGCTCAATTTGAAACACTAAAACAACAGCTTGATTTAATTTAAGAC
65 ATAATACTCAATTTGAAACA-TAAAACAACAGCTTAATTTAATTTAAGAC
* * * *
42035519 AGTATGAAAATGCTCAATTTGAAACACTCAAACAACAGCTTTAATTCAATTTATGACAGCATG
1 AGCATGAAAATGCTCAATTTGAAACACTAAAACAACAACTTTAATTCAATTTATGATAGCATG
42035582 CAAACAGTAA
Statistics
Matches: 154, Mismatches: 16, Indels: 10
0.86 0.09 0.06
Matches are distributed among these distances:
110 2 0.01
111 25 0.16
112 41 0.27
113 84 0.55
114 2 0.01
ACGTcount: A:0.43, C:0.15, G:0.11, T:0.30
Consensus pattern (113 bp):
AGCATGAAAATGCTCAATTTGAAACACTAAAACAACAACTTTAATTCAATTTATGATAGCATGAA
TAATACTCAATTTGAAACATAAAACAACAGCTTAATTTAATTTAAGAC
Found at i:42037624 original size:14 final size:15
Alignment explanation
Indices: 42037605--42037634 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
42037595 AAACCGGAGG
42037605 GAAAAAAATTGTAAA
1 GAAAAAAATTGTAAA
42037620 GAAAAAAATTGTAAA
1 GAAAAAAATTGTAAA
42037635 AACTTCATTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.67, C:0.00, G:0.13, T:0.20
Consensus pattern (15 bp):
GAAAAAAATTGTAAA
Found at i:42037958 original size:2 final size:2
Alignment explanation
Indices: 42037951--42037975 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
42037941 TTTTCGCAGT
42037951 TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC T
42037976 TTCTGTGTGA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52
Consensus pattern (2 bp):
TC
Found at i:42042397 original size:39 final size:39
Alignment explanation
Indices: 42042353--42042431 Score: 149
Period size: 39 Copynumber: 2.0 Consensus size: 39
42042343 GACAAAAAAG
42042353 TAGTGGAGTGAAGTCAGGGCCTCAAGGGCACTCTTCAGT
1 TAGTGGAGTGAAGTCAGGGCCTCAAGGGCACTCTTCAGT
*
42042392 TAGTGGAGTGAAGTCAGGGCCTCAGGGGCACTCTTCAGT
1 TAGTGGAGTGAAGTCAGGGCCTCAAGGGCACTCTTCAGT
42042431 T
1 T
42042432 CTTTTTAAGC
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
39 39 1.00
ACGTcount: A:0.22, C:0.20, G:0.34, T:0.24
Consensus pattern (39 bp):
TAGTGGAGTGAAGTCAGGGCCTCAAGGGCACTCTTCAGT
Found at i:42042707 original size:43 final size:42
Alignment explanation
Indices: 42042652--42042752 Score: 121
Period size: 43 Copynumber: 2.4 Consensus size: 42
42042642 TAACTAAAAG
* ** *
42042652 AAAACTTGAAGAAATCTTATCAAAACTAAGTATTTAAAAATT
1 AAAAATTGAAGAAAAATTATCAAAACTAACTATTTAAAAATT
* *
42042694 AAAAATTGAAAGAAAAATTATCAAAATTCACTATTTAAAAATT
1 AAAAATTG-AAGAAAAATTATCAAAACTAACTATTTAAAAATT
* *
42042737 AAAAATTTAAAAAAAA
1 AAAAATTGAAGAAAAA
42042753 AAATTATCTA
Statistics
Matches: 50, Mismatches: 8, Indels: 2
0.83 0.13 0.03
Matches are distributed among these distances:
42 14 0.28
43 36 0.72
ACGTcount: A:0.59, C:0.07, G:0.05, T:0.29
Consensus pattern (42 bp):
AAAAATTGAAGAAAAATTATCAAAACTAACTATTTAAAAATT
Found at i:42042753 original size:43 final size:43
Alignment explanation
Indices: 42042668--42042753 Score: 127
Period size: 43 Copynumber: 2.0 Consensus size: 43
42042658 TGAAGAAATC
* *
42042668 TTATCAAAACTAAGTATTTAAAAATTAAAAATTGAAAGAAAAA
1 TTATCAAAACTAACTATTTAAAAATTAAAAATTGAAAAAAAAA
* * *
42042711 TTATCAAAATTCACTATTTAAAAATTAAAAATTTAAAAAAAAA
1 TTATCAAAACTAACTATTTAAAAATTAAAAATTGAAAAAAAAA
42042754 AATTATCTAA
Statistics
Matches: 38, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
43 38 1.00
ACGTcount: A:0.60, C:0.06, G:0.03, T:0.30
Consensus pattern (43 bp):
TTATCAAAACTAACTATTTAAAAATTAAAAATTGAAAAAAAAA
Found at i:42051873 original size:24 final size:24
Alignment explanation
Indices: 42051832--42051942 Score: 141
Period size: 24 Copynumber: 4.6 Consensus size: 24
42051822 TTGATCTAAT
* * *
42051832 AACCATTCCCTTGGTATCCTTTTC
1 AACCTTTCCATTGTTATCCTTTTC
*
42051856 AACCTTTTCATTGTTATCCTTTTC
1 AACCTTTCCATTGTTATCCTTTTC
*
42051880 AACCTTTCCATTGTTATCCTTTTT
1 AACCTTTCCATTGTTATCCTTTTC
* * *
42051904 ATCATTTCCATTATTATCCTTTTC
1 AACCTTTCCATTGTTATCCTTTTC
*
42051928 AACCTTTTCATTGTT
1 AACCTTTCCATTGTT
42051943 TCGGGGATAC
Statistics
Matches: 73, Mismatches: 14, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
24 73 1.00
ACGTcount: A:0.18, C:0.26, G:0.05, T:0.51
Consensus pattern (24 bp):
AACCTTTCCATTGTTATCCTTTTC
Found at i:42056822 original size:27 final size:27
Alignment explanation
Indices: 42056792--42056862 Score: 79
Period size: 27 Copynumber: 2.6 Consensus size: 27
42056782 TAGTAGACTT
42056792 CCCCGTGTTTATTGTCCTGACAAACTA
1 CCCCGTGTTTATTGTCCTGACAAACTA
* * * * * *
42056819 CCCCGTGTCTACTATCCTGGCGAACTG
1 CCCCGTGTTTATTGTCCTGACAAACTA
*
42056846 CCCCATGTTTATTGTCC
1 CCCCGTGTTTATTGTCC
42056863 CAACAGACTC
Statistics
Matches: 34, Mismatches: 10, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
27 34 1.00
ACGTcount: A:0.17, C:0.34, G:0.17, T:0.32
Consensus pattern (27 bp):
CCCCGTGTTTATTGTCCTGACAAACTA
Found at i:42064825 original size:26 final size:26
Alignment explanation
Indices: 42064774--42064850 Score: 82
Period size: 26 Copynumber: 2.9 Consensus size: 26
42064764 TTCTATCCCT
* *
42064774 ATTTTACCCCTAACAAAAATTTTGACA
1 ATTTTACCCATAA-TAAAATTTTGACA
* *
42064801 ATTTTACCCATAGTAAAATTTTGACG
1 ATTTTACCCATAATAAAATTTTGACA
* * *
42064827 ATTTTGCCCCTAATAAATTTTTGA
1 ATTTTACCCATAATAAAATTTTGA
42064851 GGAAAAATGT
Statistics
Matches: 42, Mismatches: 8, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
26 31 0.74
27 11 0.26
ACGTcount: A:0.35, C:0.18, G:0.08, T:0.39
Consensus pattern (26 bp):
ATTTTACCCATAATAAAATTTTGACA
Found at i:42067753 original size:41 final size:41
Alignment explanation
Indices: 42067707--42067812 Score: 122
Period size: 41 Copynumber: 2.6 Consensus size: 41
42067697 TCGGGCTCTG
* **
42067707 TGCCTAGCAGGCTTTATTCCAGTGAATTATAGCAGGCTTTA
1 TGCCTAGCAGGCTTTATGCCAGTGAACCATAGCAGGCTTTA
* * * * *
42067748 TGCCTAACAGGCTTCATGCCGGTGTACCATATCAGGCTTTA
1 TGCCTAGCAGGCTTTATGCCAGTGAACCATAGCAGGCTTTA
* *
42067789 TGCCTAGAAGGCTTTATGCTAGTG
1 TGCCTAGCAGGCTTTATGCCAGTG
42067813 TATTTTAATA
Statistics
Matches: 52, Mismatches: 13, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
41 52 1.00
ACGTcount: A:0.23, C:0.22, G:0.24, T:0.32
Consensus pattern (41 bp):
TGCCTAGCAGGCTTTATGCCAGTGAACCATAGCAGGCTTTA
Found at i:42076379 original size:32 final size:32
Alignment explanation
Indices: 42076316--42076379 Score: 76
Period size: 32 Copynumber: 2.0 Consensus size: 32
42076306 TACTTTTCTT
* *
42076316 AAAAATCAAAACTTTATTTTGAAATAGTTAAA
1 AAAAATCAAAACTTCATTTTGAAAAAGTTAAA
* *
42076348 AAAAATCCAAAACTTCGTTTT-AAAAATTTAAA
1 AAAAAT-CAAAACTTCATTTTGAAAAAGTTAAA
42076380 CTTTTCTCTA
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
32 15 0.56
33 12 0.44
ACGTcount: A:0.53, C:0.09, G:0.05, T:0.33
Consensus pattern (32 bp):
AAAAATCAAAACTTCATTTTGAAAAAGTTAAA
Found at i:42077610 original size:20 final size:21
Alignment explanation
Indices: 42077576--42077622 Score: 60
Period size: 20 Copynumber: 2.3 Consensus size: 21
42077566 TAGTTCCATC
42077576 CAGCTCATTGGAAATTAAT-T
1 CAGCTCATTGGAAATTAATCT
** *
42077596 CAGCTCATTTTAAATTACTCT
1 CAGCTCATTGGAAATTAATCT
42077617 CAGCTC
1 CAGCTC
42077623 GTTACTGTTA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
20 16 0.70
21 7 0.30
ACGTcount: A:0.30, C:0.23, G:0.11, T:0.36
Consensus pattern (21 bp):
CAGCTCATTGGAAATTAATCT
Found at i:42085599 original size:61 final size:61
Alignment explanation
Indices: 42085507--42085669 Score: 200
Period size: 61 Copynumber: 2.7 Consensus size: 61
42085497 TTGAATATGT
* * * * * * *
42085507 TATATGTAAGCCTTTGTGGCTATACTTTGTTACATGTGAGGCTTAGTGGTGGAACATATTA
1 TATATGGAAGCCCTTGTGGCTGTTCTATGTTACATGTGAGCCTTAGTGGTGGAAAATATTA
* * * * *
42085568 TATGTGGAAGCCTTTTTGGTTGTTCTATGTTACATGTGAGCCTTAGTGGTGGAAAATTTTA
1 TATATGGAAGCCCTTGTGGCTGTTCTATGTTACATGTGAGCCTTAGTGGTGGAAAATATTA
* *
42085629 TATATGGAAGCCCTTGTGGCTGTTCTCTATTACATGTGAGC
1 TATATGGAAGCCCTTGTGGCTGTTCTATGTTACATGTGAGC
42085670 ATTTGTGGCG
Statistics
Matches: 86, Mismatches: 16, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
61 86 1.00
ACGTcount: A:0.22, C:0.13, G:0.25, T:0.40
Consensus pattern (61 bp):
TATATGGAAGCCCTTGTGGCTGTTCTATGTTACATGTGAGCCTTAGTGGTGGAAAATATTA
Found at i:42091560 original size:14 final size:14
Alignment explanation
Indices: 42091541--42091570 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
42091531 TTACCAATTT
*
42091541 AACATAAACTTCAA
1 AACATAAACATCAA
42091555 AACATAAACATCAA
1 AACATAAACATCAA
42091569 AA
1 AA
42091571 GCACAAATTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.63, C:0.20, G:0.00, T:0.17
Consensus pattern (14 bp):
AACATAAACATCAA
Found at i:42093787 original size:40 final size:40
Alignment explanation
Indices: 42093737--42093966 Score: 289
Period size: 40 Copynumber: 5.8 Consensus size: 40
42093727 GAGTTACTAG
* *
42093737 AGTATAAACAGGGGCACATAAGTGCAATCAGGGGTACCGA
1 AGTACAAACAGGGGCACGTAAGTGCAATCAGGGGTACCGA
* * *
42093777 AGTACTAACAGTGGCACGTATGTGCAATCAGGGGTACCGA
1 AGTACAAACAGGGGCACGTAAGTGCAATCAGGGGTACCGA
* * * * *
42093817 AGTACAAAAAAGGGCACGTATGTGCAATCAGGGGCATCGA
1 AGTACAAACAGGGGCACGTAAGTGCAATCAGGGGTACCGA
* *
42093857 AGTACAAACAGGGGCACGTATGTGCAATCAGGGGTACTGA
1 AGTACAAACAGGGGCACGTAAGTGCAATCAGGGGTACCGA
** * *
42093897 AGTACAAACAAAGGTACGTAAGTGCAATCAGGGGTACCAA
1 AGTACAAACAGGGGCACGTAAGTGCAATCAGGGGTACCGA
* * *
42093937 AGTACTAATAGGGGCACGCAAGTGCAATCA
1 AGTACAAACAGGGGCACGTAAGTGCAATCA
42093967 TACAATAATT
Statistics
Matches: 162, Mismatches: 28, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 162 1.00
ACGTcount: A:0.36, C:0.18, G:0.29, T:0.17
Consensus pattern (40 bp):
AGTACAAACAGGGGCACGTAAGTGCAATCAGGGGTACCGA
Found at i:42093962 original size:120 final size:120
Alignment explanation
Indices: 42093737--42093966 Score: 325
Period size: 120 Copynumber: 1.9 Consensus size: 120
42093727 GAGTTACTAG
* * ** *
42093737 AGTATAAACAGGGGCACATAAGTGCAATCAGGGGTACCGAAGTACTAACAGTGGCACGTATGTGC
1 AGTACAAACAGGGGCACATAAGTGCAATCAGGGGTACCGAAGTACAAACAAAGGCACGTAAGTGC
* * *
42093802 AATCAGGGGTACCGAAGTACAAAAAAGGGCACGTATGTGCAATCAGGGGCATCGA
66 AATCAGGGGTACCAAAGTACAAAAAAGGGCACGCAAGTGCAATCAGGGGCATCGA
* * * *
42093857 AGTACAAACAGGGGCACGTATGTGCAATCAGGGGTACTGAAGTACAAACAAAGGTACGTAAGTGC
1 AGTACAAACAGGGGCACATAAGTGCAATCAGGGGTACCGAAGTACAAACAAAGGCACGTAAGTGC
* * *
42093922 AATCAGGGGTACCAAAGTACTAATAGGGGCACGCAAGTGCAATCA
66 AATCAGGGGTACCAAAGTACAAAAAAGGGCACGCAAGTGCAATCA
42093967 TACAATAATT
Statistics
Matches: 95, Mismatches: 15, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
120 95 1.00
ACGTcount: A:0.36, C:0.18, G:0.29, T:0.17
Consensus pattern (120 bp):
AGTACAAACAGGGGCACATAAGTGCAATCAGGGGTACCGAAGTACAAACAAAGGCACGTAAGTGC
AATCAGGGGTACCAAAGTACAAAAAAGGGCACGCAAGTGCAATCAGGGGCATCGA
Found at i:42096281 original size:24 final size:24
Alignment explanation
Indices: 42096254--42096310 Score: 96
Period size: 24 Copynumber: 2.4 Consensus size: 24
42096244 CCAAGTGACA
42096254 GGGGCGTGTCCCAGGCCGTGTGCT
1 GGGGCGTGTCCCAGGCCGTGTGCT
42096278 GGGGCGTGTCCCAGGCCGTGTGCT
1 GGGGCGTGTCCCAGGCCGTGTGCT
* *
42096302 AGGCCGTGT
1 GGGGCGTGT
42096311 ACCATACTGA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
24 31 1.00
ACGTcount: A:0.05, C:0.28, G:0.46, T:0.21
Consensus pattern (24 bp):
GGGGCGTGTCCCAGGCCGTGTGCT
Found at i:42096287 original size:96 final size:96
Alignment explanation
Indices: 42096082--42096277 Score: 250
Period size: 96 Copynumber: 2.0 Consensus size: 96
42096072 GCAGGTCGTA
* * * * * * * *
42096082 TGCTAGGCTATGTAAAACGCTGACTTAATACCTATGGCCGTGTCTCAGACCATGTGTGTCACATA
1 TGCTAGGCTGTGTCATACACTGACTTAATACCCACGGCCGTGTCTCAGACCATGTGAGTCACACA
*
42096147 GCCAAGTGACACTGGCATGTCCCAAGCCGTG
66 GCCAAGTGACACGGGCATGTCCCAAGCCGTG
*
42096178 TGCTAGGCTGTGTCATACACTGACTTAATACCCACGGTCGTGTCTCAGACCATGTGAAG-CACAC
1 TGCTAGGCTGTGTCATACACTGACTTAATACCCACGGCCGTGTCTCAGACCATGTG-AGTCACAC
* * * *
42096242 GGCCAAGTGACAGGGGCGTGTCCCAGGCCGTG
65 AGCCAAGTGACACGGGCATGTCCCAAGCCGTG
42096274 TGCT
1 TGCT
42096278 GGGGCGTGTC
Statistics
Matches: 85, Mismatches: 14, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
96 84 0.99
97 1 0.01
ACGTcount: A:0.23, C:0.27, G:0.27, T:0.23
Consensus pattern (96 bp):
TGCTAGGCTGTGTCATACACTGACTTAATACCCACGGCCGTGTCTCAGACCATGTGAGTCACACA
GCCAAGTGACACGGGCATGTCCCAAGCCGTG
Found at i:42096297 original size:12 final size:12
Alignment explanation
Indices: 42096258--42096310 Score: 52
Period size: 12 Copynumber: 4.4 Consensus size: 12
42096248 GTGACAGGGG
42096258 CGTGTCCCAGGC
1 CGTGTCCCAGGC
* ** *
42096270 CGTGTGCTGGGG
1 CGTGTCCCAGGC
42096282 CGTGTCCCAGGC
1 CGTGTCCCAGGC
* *
42096294 CGTGTGCTAGGC
1 CGTGTCCCAGGC
42096306 CGTGT
1 CGTGT
42096311 ACCATACTGA
Statistics
Matches: 31, Mismatches: 10, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
12 31 1.00
ACGTcount: A:0.06, C:0.30, G:0.42, T:0.23
Consensus pattern (12 bp):
CGTGTCCCAGGC
Found at i:42096379 original size:120 final size:119
Alignment explanation
Indices: 42096164--42096386 Score: 331
Period size: 120 Copynumber: 1.9 Consensus size: 119
42096154 GACACTGGCA
* **
42096164 TGTCCCAAGCCGTGTGCTAGGCTGTGTCATACACTGACTTAATACCCACGGTCGTGTCTCAGACC
1 TGTCCCAAGCCGTGTGCTAGGCCGTGTCATA-ACTGACTTAATACCCACGACCGTGTCTCAGACC
*
42096229 ATGTGAAGCACACGGCCAAGTGACAGGGGCGTGTCCCAGGCCGTGTGCTGGGGCG
65 ATGTGAAGCACACGGCCAAGTGACACGGGCGTGTCCCAGGCCGTGTGCTGGGGCG
* * *
42096284 TGTCCCAGGCCGTGTGCTAGGCCGTGTACCAT-ACTGATTTAATACCCATGACCGTGTCTCAGAC
1 TGTCCCAAGCCGTGTGCTAGGCCGTGT--CATAACTGACTTAATACCCACGACCGTGTCTCAGAC
**
42096348 CATGTGCGGCACACGGCCAAGTGACACGGGCGTGTCCCA
64 CATGTGAAGCACACGGCCAAGTGACACGGGCGTGTCCCA
42096387 AGCCATGTCC
Statistics
Matches: 92, Mismatches: 9, Indels: 4
0.88 0.09 0.04
Matches are distributed among these distances:
120 89 0.97
122 3 0.03
ACGTcount: A:0.20, C:0.30, G:0.30, T:0.21
Consensus pattern (119 bp):
TGTCCCAAGCCGTGTGCTAGGCCGTGTCATAACTGACTTAATACCCACGACCGTGTCTCAGACCA
TGTGAAGCACACGGCCAAGTGACACGGGCGTGTCCCAGGCCGTGTGCTGGGGCG
Found at i:42097339 original size:36 final size:37
Alignment explanation
Indices: 42097263--42097415 Score: 227
Period size: 37 Copynumber: 4.2 Consensus size: 37
42097253 ACAAAACAAT
* * * *
42097263 CCAAACGCTCGTAAGAGCTAATTCATCCGATAACACG
1 CCAAATGCTCATAAGAGCTAATCCACCCGATAACACG
* * *
42097300 CCAAATGTTCATAAGAGCGAATCCA-CCGATAACATG
1 CCAAATGCTCATAAGAGCTAATCCACCCGATAACACG
42097336 CCAAATGCTCATAAGAGCTAATCCACCCGATAACACG
1 CCAAATGCTCATAAGAGCTAATCCACCCGATAACACG
*
42097373 CCAAATGCTCATAAGAGCTAATCCACCCGATAACATG
1 CCAAATGCTCATAAGAGCTAATCCACCCGATAACACG
42097410 CCAAAT
1 CCAAAT
42097416 CAGGGAGGAT
Statistics
Matches: 105, Mismatches: 10, Indels: 2
0.90 0.09 0.02
Matches are distributed among these distances:
36 33 0.31
37 72 0.69
ACGTcount: A:0.38, C:0.29, G:0.14, T:0.18
Consensus pattern (37 bp):
CCAAATGCTCATAAGAGCTAATCCACCCGATAACACG
Found at i:42097385 original size:73 final size:74
Alignment explanation
Indices: 42097263--42097415 Score: 245
Period size: 73 Copynumber: 2.1 Consensus size: 74
42097253 ACAAAACAAT
* * * * *
42097263 CCAAACGCTCGTAAGAGCTAATTCATCCGATAACACGCCAAATGTTCATAAGAGCGAATCCA-CC
1 CCAAATGCTCATAAGAGCTAATCCACCCGATAACACGCCAAATGCTCATAAGAGCGAATCCACCC
42097327 GATAACATG
66 GATAACATG
*
42097336 CCAAATGCTCATAAGAGCTAATCCACCCGATAACACGCCAAATGCTCATAAGAGCTAATCCACCC
1 CCAAATGCTCATAAGAGCTAATCCACCCGATAACACGCCAAATGCTCATAAGAGCGAATCCACCC
42097401 GATAACATG
66 GATAACATG
42097410 CCAAAT
1 CCAAAT
42097416 CAGGGAGGAT
Statistics
Matches: 73, Mismatches: 6, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
73 56 0.77
74 17 0.23
ACGTcount: A:0.38, C:0.29, G:0.14, T:0.18
Consensus pattern (74 bp):
CCAAATGCTCATAAGAGCTAATCCACCCGATAACACGCCAAATGCTCATAAGAGCGAATCCACCC
GATAACATG
Found at i:42099327 original size:30 final size:31
Alignment explanation
Indices: 42099293--42099360 Score: 84
Period size: 30 Copynumber: 2.2 Consensus size: 31
42099283 TTGCCCAAGA
** * **
42099293 GTAAATACTTAAAATTTGAGGGATTAA-AGT
1 GTAAATACAAAAAATTTGAAGGACCAATAGT
42099323 GTAAATACAAAAAATTTGAAGGACCAATAGT
1 GTAAATACAAAAAATTTGAAGGACCAATAGT
42099354 GTAAATA
1 GTAAATA
42099361 TTTTAAGGGT
Statistics
Matches: 32, Mismatches: 5, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
30 22 0.69
31 10 0.31
ACGTcount: A:0.49, C:0.06, G:0.18, T:0.28
Consensus pattern (31 bp):
GTAAATACAAAAAATTTGAAGGACCAATAGT
Done.