Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr09 ID=Chr09-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 70713020
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 1142373 characters in sequence are not A, C, G, or T
File 130 of 226
Found at i:43612389 original size:85 final size:86
Alignment explanation
Indices: 43612225--43612382 Score: 230
Period size: 85 Copynumber: 1.8 Consensus size: 86
43612215 AGCCTCAAGC
* * * *
43612225 ACCTTGGTGGCTCGGATATGCGGGAGCCTCGAGCACCATCGGAACCTTAGTGCTTGGATGTGCGG
1 ACCTTGATGGCTCGGATATGCGGGAGCCTCGACCACCATCGGAACCTTAGTGCTAGGATGTCCGG
*
43612290 GAGCCTCGGCCACCATCGGCA
66 AAGCCTCGGCCACCATCGGCA
* *
43612311 ACCTTGAT-GCTCGGATGTGCGGGAGCCTCGACCACCATC-GACACCTTGGTGCTAGGATGTCCG
1 ACCTTGATGGCTCGGATATGCGGGAGCCTCGACCACCATCGGA-ACCTTAGTGCTAGGATGTCCG
43612374 GAAGCCTCG
65 GAAGCCTCG
43612383 AGCACCAAAG
Statistics
Matches: 64, Mismatches: 7, Indels: 3
0.86 0.09 0.04
Matches are distributed among these distances:
84 2 0.03
85 55 0.86
86 7 0.11
ACGTcount: A:0.18, C:0.30, G:0.32, T:0.20
Consensus pattern (86 bp):
ACCTTGATGGCTCGGATATGCGGGAGCCTCGACCACCATCGGAACCTTAGTGCTAGGATGTCCGG
AAGCCTCGGCCACCATCGGCA
Found at i:43616337 original size:85 final size:85
Alignment explanation
Indices: 43616126--43617729 Score: 1353
Period size: 85 Copynumber: 18.9 Consensus size: 85
43616116 AGAGCCTCAA
* ** *
43616126 GCACCTTGGTGGCTCGGATATGCGGGAGCCTCGAGCCCCATCGGCACCTTGGTGCTTGGATGTGC
1 GCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGCTGGGATGTGC
* * *
43616191 GGGAACCTCG-GACCACCATTTG
66 GGGAGCCTCGAG-CC-GCA-TCG
* *
43616213 GCAACCTTGGTGGCCCGGATGTGCGGGAGCCTCGAGCAGCATAGGCACCTTGGTGCTGGGATGTG
1 GC-ACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGCTGGGATGTG
*
43616278 CGGGAGCCTCGAGCCGTATCG
65 CGGGAGCCTCGAGCCGCATCG
* ** *
43616299 ACACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCAGCATCTTCAACTTGGTGCAT-GGATGTG
1 GCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGC-TGGGATGTG
* * *
43616363 CAGTAGCCTCGAGCAGCATCAG
65 CGGGAGCCTCGAGCCGCATC-G
** * * * * * * *
43616385 G-ACCTTGGT-AATTGGATGTGCGGTAGACTCGAGCACCATCGGCAGCTTGGCTGGTCGGATGTG
1 GCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGG-TGCTGGGATGTG
* * * *
43616448 CTGGAGCCTGGAGCAGCATCC
65 CGGGAGCCTCGAGCCGCATCG
* * * ** *
43616469 GCACCTTGGT-GCTGGGATGTGCGGGAGCCTCGAGCAGCATCGCCACCATAATGCTGGGATGTGT
1 GCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGCTGGGATGTGC
* *
43616533 GGGAGCGTCGAGCCACATCG
66 GGGAGCCTCGAGCCGCATCG
* * *
43616553 GCACCTTGGTGGCTCGGATGTACGGGAGCCTCGAGCACCATCAGG-ACCTTGGTGCTTGGATGTG
1 GCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCAGCATC-GGCACCTTGGTGCTGGGATGTG
*
43616617 CGGTAGCCTCGAGCAC-CATCG
65 CGGGAGCCTCGAGC-CGCATCG
* * * * * * * * * *
43616638 GTACCTTGGTTGTTCGGATGTGTGGGAGCCTCGAGTAGTATCAGCACCTTGCTGGTAGGATGTGC
1 GCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGCTGGGATGTGC
*
43616703 GGGAGCCTCGAGCCGCATCA
66 GGGAGCCTCGAGCCGCATCG
* * * * * * *
43616723 GCACCTTGGTGGCTCAGATGTGCGGGAGGCTCAAGCACCATCGGTACCTTGGTGCGGGGATGTGG
1 GCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGCTGGGATGTGC
* * *
43616788 GGGAACCTTGGGCCGCATCG
66 GGGAGCCTCGAGCCGCATCG
* * ** * * * * * ** * * *
43616808 GTACCTTGGTGGCTCAGATGACCTGGAGACTCAAACATCATCAACACCATGG-GACTCGGAGGTG
1 GCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTG-CTGGGATGTG
43616872 CGGGAGCCTCGAGCAC-CATCG
65 CGGGAGCCTCGAGC-CGCATCG
* * * * *
43616893 GCACCTTGGTGGCTCGAATGTGCGGGAGCCTCGAGCAACACCGACACCTTGGTGCTGGGATATGC
1 GCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGCTGGGATGTGC
* *
43616958 AGGAGCCTCGAGCAGCATCG
66 GGGAGCCTCGAGCCGCATCG
* * * *
43616978 GCACCTTGGTGGCCCGAATGTGCGGGAGCCTCGAGCAGCATAGGCACCTTGGTGCTGGGATATGC
1 GCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGCTGGGATGTGC
* *
43617043 GGGAGCCTCGAGCTGCATTG
66 GGGAGCCTCGAGCCGCATCG
* * * * ** * * *
43617063 ACACCTTGGTGGCTCGGTTGTGTGGGAGCCTCGAGCAGTATCTTCAACTTGGTGCAT-AGATGCG
1 GCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGC-TGGGATGTG
* * * *
43617127 CAGTAGCGTCGAGCAGCATCAG
65 CGGGAGCCTCGAGCCGCATC-G
** * * * * * *
43617149 G-ACCTTGGT-AATTGGATCTGCGGGAGACTCGAGTACCATCGGCACCTTGGCTGGC-CGGATGT
1 GCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGG-T-GCTGGGATGT
* * *
43617211 GCTGGAGCCTCGAGCAGCATCC
64 GCGGGAGCCTCGAGCCGCATCG
* * * * *
43617233 GCACCTTGGT-GCTGGGATGTGCGGGAGCCTCGAGCAGTATCGGCACCTTGGTTGTTCGGATGTC
1 GCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGG-TGCTGGGATGTG
** *
43617297 CAAGAGCCTCGAGCAGCATCG
65 CGGGAGCCTCGAGCCGCATCG
* * * * * *
43617318 GCACCTTGGT-GCTGGGATGTGCAGGAGCCTCGAGCCGTATCGGCACCTTGGGGGCTCGGATGTG
1 GCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTT-GGTGCTGGGATGTG
* * **
43617382 TGGGAGCCTCGAGCAGCATTT
65 CGGGAGCCTCGAGCCGCATCG
* * * * * * * ** *
43617403 TCAACTTGGT-GCAT-GGATGCGCAGTAGCCTCGAGCAGCATTAGG-ACCTTTGTAATTGGATGT
1 GCACCTTGGTGGC-TCGGATGTGCGGGAGCCTCGAGCAGCA-TCGGCACCTTGGTGCTGGGATGT
*
43617465 GCGGGAGACTCGAGCAC-CATCG
64 GCGGGAGCCTCGAGC-CGCATCG
* * * * *
43617487 GTACCTTGGCTGGC-CGGATGTGCTGGAGCCTGGAGCAGCATCCGCACCTTGGTTCTGGGATGTG
1 GCACCTTGG-TGGCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGCTGGGATGTG
** *
43617551 TAGGAGCCTCGAGCCGTATCG
65 CGGGAGCCTCGAGCCGCATCG
* * * * * * * * *
43617572 ACACCTTGGGGGCTCGGATGTGTGGGAGCCT-TAGCAACATCAGAACCTTGGTCCTGGTATGTGC
1 GCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGCTGGGATGTGC
43617636 GGGAGCCTCGAGCCGCATCG
66 GGGAGCCTCGAGCCGCATCG
* * * * * * *
43617656 GCACCTTGGTGTCTCGAATGCGCGGAAGCCTCGAGCA-CTATCGGTACCTTGGTGATGGGATCTG
1 GCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCAGC-ATCGGCACCTTGGTGCTGGGATGTG
43617720 CGGGAGCCTC
65 CGGGAGCCTC
43617730 AAGCACCATC
Statistics
Matches: 1213, Mismatches: 269, Indels: 72
0.78 0.17 0.05
Matches are distributed among these distances:
84 206 0.17
85 914 0.75
86 21 0.02
87 3 0.00
88 68 0.06
89 1 0.00
ACGTcount: A:0.18, C:0.26, G:0.35, T:0.22
Consensus pattern (85 bp):
GCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGCTGGGATGTGC
GGGAGCCTCGAGCCGCATCG
Found at i:43616585 original size:212 final size:211
Alignment explanation
Indices: 43616126--43617741 Score: 1366
Period size: 212 Copynumber: 7.6 Consensus size: 211
43616116 AGAGCCTCAA
* **
43616126 GCACCTTGGTGGCTCGGATATGCGGGAGCCTCGAGCCCCATC-GGCACCTTGGTGCTTGGATGTG
1 GCACCTTGGT-GCTCGGATGTGCGGGAGCCTCGAGCAGCATCAGGCACCTTGGTGCTTGGATGTG
* * * *
43616190 CGGGA-ACCTCGGACCACCATTTGGCAACCTTGGTGGCCCGGATGTGCGGGAGCCTCGAGCAGCA
65 CGGGAGA-CTC-GAGCACCA-TCGGC-ACCTTGGTGG-TCGGATGTGCTGGAGCCTCGAGCAGCA
* *
43616254 TAGGCACCTTGGTGCTGGGATGTGCGGGAGCCTCGAGCCGTATCGACACCTTGGTGGCTCGGATG
125 TCGGCACCTTGGTGCTGGGATGTGCGGGAGCCTCGAGCCGCATCGACACCTTGGT-GCTCGGATG
*
43616319 TGCGGGAGCCTCGAGCAGCATCT
189 TGCGGGAGCCTCGAGCAGCATCG
* * * * **
43616342 TCAACTTGGTGCAT-GGATGTGCAGTAGCCTCGAGCAGCATCAGG-ACCTTGGTAATTGGATGTG
1 GCACCTTGGTGC-TCGGATGTGCGGGAGCCTCGAGCAGCATCAGGCACCTTGGTGCTTGGATGTG
* * * *
43616405 CGGTAGACTCGAGCACCATCGGCAGCTTGGCTGGTCGGATGTGCTGGAGCCTGGAGCAGCATCCG
65 CGGGAGACTCGAGCACCATCGGCACCTTGG-TGGTCGGATGTGCTGGAGCCTCGAGCAGCATCGG
* * * ** * *
43616470 CACCTTGGTGCTGGGATGTGCGGGAGCCTCGAGCAGCATCGCCACCATAATGCTGGGATGTGTGG
129 CACCTTGGTGCTGGGATGTGCGGGAGCCTCGAGCCGCATCGACACCTTGGTGCTCGGATGTGCGG
*
43616535 GAGCGTCGAGCCA-CATCG
194 GAGCCTCGAG-CAGCATCG
* *
43616553 GCACCTTGGTGGCTCGGATGTACGGGAGCCTCGAGCACCATCAGG-ACCTTGGTGCTTGGATGTG
1 GCACCTTGGT-GCTCGGATGTGCGGGAGCCTCGAGCAGCATCAGGCACCTTGGTGCTTGGATGTG
* * * * * * *
43616617 CGGTAGCCTCGAGCACCATCGGTACCTTGGTTGTTCGGATGTG-TGGGAGCCTCGAGTAGTATCA
65 CGGGAGACTCGAGCACCATCGGCACCTTGG-TGGTCGGATGTGCT-GGAGCCTCGAGCAGCATCG
* * * *
43616681 GCACCTTGCTGGTAGGATGTGCGGGAGCCTCGAGCCGCATC-AGCACCTTGGTGGCTCAGATGTG
128 GCACCTTGGTGCTGGGATGTGCGGGAGCCTCGAGCCGCATCGA-CACCTTGGT-GCTCGGATGTG
* * *
43616745 CGGGAGGCTCAAGCACCATCG
191 CGGGAGCCTCGAGCAGCATCG
* ** * * * * * * ** **
43616766 GTACCTTGGTGCGGGGATGTGGGGGAACCTTGGGCCGCATC-GGTACCTTGGTGGCTCAGATGAC
1 GCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCAGCATCAGGCACCTTGGT-GCTTGGATGTG
* * * * ** * * * * *
43616830 CTGGAGACTCAAACATCATCAACACCATGG-GACTCGGAGGTGCGGGAGCCTCGAGCACCATCGG
65 CGGGAGACTCGAGCACCATCGGCACCTTGGTG-GTCGGATGTGCTGGAGCCTCGAGCAGCATCGG
* * ** * * * *
43616894 CACCTTGGTGGCTCGAATGTGCGGGAGCCTCGAGCAACACCGACACCTTGGTGCTGGGATATGCA
129 CACCTTGGT-GCTGGGATGTGCGGGAGCCTCGAGCCGCATCGACACCTTGGTGCTCGGATGTGCG
43616959 GGAGCCTCGAGCAGCATCG
193 GGAGCCTCGAGCAGCATCG
* * * *
43616978 GCACCTTGGTGGCCCGAATGTGCGGGAGCCTCGAGCAGCAT-AGGCACCTTGGTGCTGGGATATG
1 GCACCTTGGT-GCTCGGATGTGCGGGAGCCTCGAGCAGCATCAGGCACCTTGGTGCTTGGATGTG
* ** * * * * *
43617042 CGGGAGCCTCGAGCTGCATTGACACCTTGGTGGCTCGGTTGTG-TGGGAGCCTCGAGCAGTATCT
65 CGGGAGACTCGAGCACCATCGGCACCTTGGTGG-TCGGATGTGCT-GGAGCCTCGAGCAGCATCG
* * * * * * * * * ** * *
43617106 TCAACTTGGTGCAT-AGATGCGCAGTAGCGTCGAGCAGCATC-AGGACCTTGGTAATTGGATCTG
128 GCACCTTGGTGC-TGGGATGTGCGGGAGCCTCGAGCCGCATCGA-CACCTTGGTGCTCGGATGTG
* * *
43617169 CGGGAGACTCGAGTACCATCG
191 CGGGAGCCTCGAGCAGCATCG
* * *
43617190 GCACCTTGGCTGGC-CGGATGTGCTGGAGCCTCGAGCAGCATC-CGCACCTTGGTGCTGGGATGT
1 GCACCTTGG-T-GCTCGGATGTGCGGGAGCCTCGAGCAGCATCAGGCACCTTGGTGCTTGGATGT
* ** * * **
43617253 GCGGGAGCCTCGAGCAGTATCGGCACCTTGGTTGTTCGGATGTCCAAGAGCCTCGAGCAGCATCG
64 GCGGGAGACTCGAGCACCATCGGCACCTTGG-TGGTCGGATGTGCTGGAGCCTCGAGCAGCATCG
* * * * *
43617318 GCACCTTGGTGCTGGGATGTGCAGGAGCCTCGAGCCGTATCGGCACCTTGGGGGCTCGGATGTGT
128 GCACCTTGGTGCTGGGATGTGCGGGAGCCTCGAGCCGCATCGACACCTT-GGTGCTCGGATGTGC
**
43617383 GGGAGCCTCGAGCAGCATTT
192 GGGAGCCTCGAGCAGCATCG
* * * * * * * **
43617403 TCAACTTGGTGCAT-GGATGCGCAGTAGCCTCGAGCAGCATTAGG-ACCTTTGTAATTGGATGTG
1 GCACCTTGGTGC-TCGGATGTGCGGGAGCCTCGAGCAGCATCAGGCACCTTGGTGCTTGGATGTG
* * * *
43617466 CGGGAGACTCGAGCACCATCGGTACCTTGGCTGGCCGGATGTGCTGGAGCCTGGAGCAGCATCCG
65 CGGGAGACTCGAGCACCATCGGCACCTTGG-TGGTCGGATGTGCTGGAGCCTCGAGCAGCATCGG
* ** * * *
43617531 CACCTTGGTTCTGGGATGTGTAGGAGCCTCGAGCCGTATCGACACCTTGGGGGCTCGGATGTGTG
129 CACCTTGGTGCTGGGATGTGCGGGAGCCTCGAGCCGCATCGACACCTT-GGTGCTCGGATGTGCG
* * *
43617596 GGAGCCT-TAGCAACATCA
193 GGAGCCTCGAGCAGCATCG
* * * * * *
43617614 GAACCTTGGTCCT-GGTATGTGCGGGAGCCTCGAGCCGCATC-GGCACCTTGGTGTCTCGAATGC
1 GCACCTTGGTGCTCGG-ATGTGCGGGAGCCTCGAGCAGCATCAGGCACCTTGGTG-CTTGGATGT
* * * * * * * * * *
43617677 GCGGAAGCCTCGAGCACTATCGGTACCTTGGTGATGGGATCTGCGGGAGCCTCAAGCACCATCGG
64 GCGGGAGACTCGAGCACCATCGGCACCTTGGTGGTCGGATGTGCTGGAGCCTCGAGCAGCATCGG
43617742 TAAACGCATC
Statistics
Matches: 1116, Mismatches: 247, Indels: 79
0.77 0.17 0.05
Matches are distributed among these distances:
210 5 0.00
211 109 0.10
212 731 0.66
213 203 0.18
214 8 0.01
215 48 0.04
216 12 0.01
ACGTcount: A:0.18, C:0.26, G:0.35, T:0.21
Consensus pattern (211 bp):
GCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCAGCATCAGGCACCTTGGTGCTTGGATGTGC
GGGAGACTCGAGCACCATCGGCACCTTGGTGGTCGGATGTGCTGGAGCCTCGAGCAGCATCGGCA
CCTTGGTGCTGGGATGTGCGGGAGCCTCGAGCCGCATCGACACCTTGGTGCTCGGATGTGCGGGA
GCCTCGAGCAGCATCG
Found at i:43617408 original size:297 final size:295
Alignment explanation
Indices: 43616126--43617692 Score: 1408
Period size: 297 Copynumber: 5.3 Consensus size: 295
43616116 AGAGCCTCAA
* * * *
43616126 GCACCTTGGTGGCTCGGATATGCGGGAGCCTCGAGCCCCATCGGCACCTTGGTGCTTGGATGTGC
1 GCACCTTGGT-GCTCGGATGTGCGGGAGCCTCGAGCCGCATCGGCACCTTGGGGCTCGGATGTGC
* * * * * *
43616191 GGGAACCTCGGACCACCAT-TTGGCAACCTTGGTGGCCCGGATGTGCGGGAGCCTCGAGCAGCAT
65 GGGAGCCTC-GAGCAGCATCTT--CAA-CTTGGT-G-CTGGATGCGCAGGAGCCTCGAGCAGCAT
* * * *
43616255 -AGGCACCTTGGTGCTGGGATGTGCGGGAGCCTCGAGC-CGTATCGACACCTTGGTGGCTCGGAT
124 CAGG-ACCTTGGTACTCGGATGTGCGGGAGCCTCGAGCAC-CATCGGCACCTTGGTGGCTCGGAT
** * * *
43616318 GTGCGGGAGCCTCGAGCAGCATCTTCAACTTGGTGCAT-GGATGTGCAGTAGCCTCGAGCAGCAT
187 GTGCGGGAGCCTCGAGCAGCATCCGCACCTTGGTGC-TGGGATGTGCAGGAGCCTCGAGCAGTAT
** * * * *
43616382 CAGG-ACCTTGGT-AATTGGATGTGCGGTAGACTCGAGCACCATCG
251 C-GGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCAGCATCG
* * * * * * * *
43616426 GCAGCTTGGCTGGTCGGATGTGCTGGAGCCTGGAGCAGCATCCGCACCTTGGTGCTGGGATGTGC
1 GCACCTTGG-TGCTCGGATGTGCGGGAGCCTCGAGCCGCATCGGCACCTTGGGGCTCGGATGTGC
** * * ** * ** *
43616491 GGGAGCCTCGAGCAGCATCGCCACCATAATGCTGGGATGTGTGGGAGCGTCGAGCCA-CATC-GG
65 GGGAGCCTCGAGCAGCATCTTCAACTTGGTGCT-GGATGCGCAGGAGCCTCGAG-CAGCATCAGG
* * *
43616554 CACCTTGGTGGCTCGGATGTACGGGAGCCTCGAGCACCATCAGG-ACCTTGGT-GCTTGGATGTG
128 -ACCTTGGT-ACTCGGATGTGCGGGAGCCTCGAGCACCATC-GGCACCTTGGTGGCTCGGATGTG
* * * * * * ** * *
43616617 CGGTAGCCTCGAGCACCATCGGTACCTTGGTTGTTCGGATGTGTGGGAGCCTCGAGTAGTATCAG
190 CGGGAGCCTCGAGCAGCATCCGCACCTTGG-TGCTGGGATGTGCAGGAGCCTCGAGCAGTATCGG
* * * *
43616682 CACCTTGCTGG-TAGGATGTGCGGGAGCCTCGAGCCGCATCA
254 CACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCAGCATCG
* * * * * **
43616723 GCACCTTGGTGGCTCAGATGTGCGGGAGGCTCAAGCAC-CATCGGTACCTTGGTGCGGGGATGTG
1 GCACCTTGGT-GCTCGGATGTGCGGGAGCCTCGAGC-CGCATCGGCACCTTGGGGCTCGGATGTG
* * * * * * * * * * * * *
43616787 GGGGAACCTTGGGCCGCATCGGT-ACCTTGGTGGCTCAGATGAC-CTGGAGACTCAAACATCATC
64 CGGGAGCCTCGAGCAGCATC-TTCAACTTGGT-GCT-GGATG-CGCAGGAGCCTCGAGCAGCATC
** * * * *
43616850 AACACCATGGGACTCGGAGGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGGCTCGAATGTG
125 AGGACCTTGGTACTCGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGGCTCGGATGTG
* * *
43616915 CGGGAGCCTCGAGCAACA-CCGACACCTTGGTGCTGGGATATGCAGGAGCCTCGAGCAGCATCGG
190 CGGGAGCCTCGAGCAGCATCCG-CACCTTGGTGCTGGGATGTGCAGGAGCCTCGAGCAGTATCGG
* * *
43616979 CACCTTGGTGGCCCGAATGTGCGGGAGCCTCGAGCAGCATAG
254 CACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCAGCATCG
* * * * * * *
43617021 GCACCTTGGTGCTGGGATATGCGGGAGCCTCGAGCTGCATTGACACCTTGGTGGCTCGGTTGTGT
1 GCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCCGCATCGGCACCTTGG-GGCTCGGATGTGC
* * * *
43617086 GGGAGCCTCGAGCAGTATCTTCAACTTGGTGCATAGATGCGCAGTAGCGTCGAGCAGCATCAGGA
65 GGGAGCCTCGAGCAGCATCTTCAACTTGGTGC-TGGATGCGCAGGAGCCTCGAGCAGCATCAGGA
* * * * * *
43617151 CCTTGGTAATTGGATCTGCGGGAGACTCGAGTACCATCGGCACCTTGGCTGGC-CGGATGTGCTG
129 CCTTGGTACTCGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGG-TGGCTCGGATGTGCGG
*
43617215 GAGCCTCGAGCAGCATCCGCACCTTGGTGCTGGGATGTGCGGGAGCCTCGAGCAGTATCGGCACC
193 GAGCCTCGAGCAGCATCCGCACCTTGGTGCTGGGATGTGCAGGAGCCTCGAGCAGTATCGGCACC
* * * **
43617280 TTGGTTGTTCGGATGTCCAAGAGCCTCGAGCAGCATCG
258 TTGGTGGCTCGGATGTGCGGGAGCCTCGAGCAGCATCG
* * * *
43617318 GCACCTTGGTGCTGGGATGTGCAGGAGCCTCGAGCCGTATCGGCACCTTGGGGGCTCGGATGTGT
1 GCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCCGCATCGGCACCTT-GGGGCTCGGATGTGC
* * *
43617383 GGGAGCCTCGAGCAGCATTTTCAACTTGGTGCATGGATGCGCAGTAGCCTCGAGCAGCATTAGGA
65 GGGAGCCTCGAGCAGCATCTTCAACTTGGTGC-TGGATGCGCAGGAGCCTCGAGCAGCATCAGGA
* * * * * *
43617448 CCTTTGTAATTGGATGTGCGGGAGACTCGAGCACCATCGGTACCTTGGCTGGC-CGGATGTGCTG
129 CCTTGGTACTCGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGG-TGGCTCGGATGTGCGG
* * * * *
43617512 GAGCCTGGAGCAGCATCCGCACCTTGGTTCTGGGATGTGTAGGAGCCTCGAGCCGTATCGACACC
193 GAGCCTCGAGCAGCATCCGCACCTTGGTGCTGGGATGTGCAGGAGCCTCGAGCAGTATCGGCACC
* * * * *
43617577 TTGGGGGCTCGGATGTGTGGGAGCCT-TAGCAACATCA
258 TTGGTGGCTCGGATGTGCGGGAGCCTCGAGCAGCATCG
* * * * *
43617614 GAACCTTGGTCCT-GGTATGTGCGGGAGCCTCGAGCCGCATCGGCACCTTGGTGTCTCGAATGCG
1 GCACCTTGGTGCTCGG-ATGTGCGGGAGCCTCGAGCCGCATCGGCACCTTGG-GGCTCGGATGTG
*
43617678 CGGAAGCCTCGAGCA
64 CGGGAGCCTCGAGCA
43617693 CTATCGGTAC
Statistics
Matches: 1037, Mismatches: 197, Indels: 70
0.80 0.15 0.05
Matches are distributed among these distances:
295 5 0.00
296 145 0.14
297 683 0.66
298 134 0.13
299 7 0.01
300 62 0.06
301 1 0.00
ACGTcount: A:0.18, C:0.26, G:0.35, T:0.21
Consensus pattern (295 bp):
GCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCCGCATCGGCACCTTGGGGCTCGGATGTGCG
GGAGCCTCGAGCAGCATCTTCAACTTGGTGCTGGATGCGCAGGAGCCTCGAGCAGCATCAGGACC
TTGGTACTCGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGGCTCGGATGTGCGGGAG
CCTCGAGCAGCATCCGCACCTTGGTGCTGGGATGTGCAGGAGCCTCGAGCAGTATCGGCACCTTG
GTGGCTCGGATGTGCGGGAGCCTCGAGCAGCATCG
Found at i:43619677 original size:42 final size:42
Alignment explanation
Indices: 43619565--43619997 Score: 356
Period size: 42 Copynumber: 10.2 Consensus size: 42
43619555 NNNNNNNNNN
* *
43619565 TTGGTGCTTGGATGTGCGGGAGCCTCG-GCCACCATCGGCAACC
1 TTGGTGCTGGGATGTGCGGGAGCCTCGAG-CAGCATCGGC-ACC
*** *
43619608 TTGGTGGCCCAGATGTGCGGGAGCCTCGAGCAGCATAGGCACC
1 TTGGT-GCTGGGATGTGCGGGAGCCTCGAGCAGCATCGGCACC
* *
43619651 TTGGTGCTGGGATGTGCGGGAGCCTCGAGCCGCATCGACACC
1 TTGGTGCTGGGATGTGCGGGAGCCTCGAGCAGCATCGGCACC
* ** *
43619693 TTAGTGGCTCGGG-TGTGCGGGAGCCTCGAGCAGCATCTTCAAC
1 TTGGT-GCT-GGGATGTGCGGGAGCCTCGAGCAGCATCGGCACC
* * * * *
43619736 TTGGTGCAT-AGATGTACAGTAGCCTCAAGCAGCATCAGG-ACC
1 TTGGTGC-TGGGATGTGCGGGAGCCTCGAGCAGCATC-GGCACC
** * * * * * *
43619778 TTGGTAATTGGATGTGCGGTAGACTCGAGCACCATCAGCAGC
1 TTGGTGCTGGGATGTGCGGGAGCCTCGAGCAGCATCGGCACC
* * * * * *
43619820 TTGGCTGGTCGGATGTGCTGGAGCCTGGAGCAGCATCCGCCCC
1 TTGG-TGCTGGGATGTGCGGGAGCCTCGAGCAGCATCGGCACC
* * *
43619863 TCGGTGCTGGGATGTGCGGGAGCCTCGAGCAGTATCGCCACC
1 TTGGTGCTGGGATGTGCGGGAGCCTCGAGCAGCATCGGCACC
* * *
43619905 TTGATGCTGGGATGTGTGGGAGCGTCGAGCCA-CATCGGCACC
1 TTGGTGCTGGGATGTGCGGGAGCCTCGAG-CAGCATCGGCACC
* ** *
43619947 TTGGTGGCTCGGATGTATGGGAGCCTCGAGCACCATCAGG-ACC
1 TTGGT-GCTGGGATGTGCGGGAGCCTCGAGCAGCATC-GGCACC
43619990 TTGGTGCT
1 TTGGTGCT
43619998 NNNNNNNNNN
Statistics
Matches: 311, Mismatches: 65, Indels: 29
0.77 0.16 0.07
Matches are distributed among these distances:
41 3 0.01
42 163 0.52
43 112 0.36
44 32 0.10
45 1 0.00
ACGTcount: A:0.17, C:0.26, G:0.35, T:0.21
Consensus pattern (42 bp):
TTGGTGCTGGGATGTGCGGGAGCCTCGAGCAGCATCGGCACC
Found at i:43619726 original size:85 final size:85
Alignment explanation
Indices: 43619565--43619997 Score: 342
Period size: 85 Copynumber: 5.1 Consensus size: 85
43619555 NNNNNNNNNN
* * * * *
43619565 TTGGTGCTTGGATGTGCGGGAGCCTCG-GCCACCATCGGCAACCTTGGTGGCCCAGATGTGCGGG
1 TTGGTGCTGGGATGTGCGGGAGCCTCGAGCC-GCATCGAC-ACCTTGGTGGCTCGGATGTGCGGG
43619629 AGCCTCGAGCAGCATAGGCACC
64 AGCCTCGAGCAGCATAGGCACC
* *
43619651 TTGGTGCTGGGATGTGCGGGAGCCTCGAGCCGCATCGACACCTTAGTGGCTCGGGTGTGCGGGAG
1 TTGGTGCTGGGATGTGCGGGAGCCTCGAGCCGCATCGACACCTTGGTGGCTCGGATGTGCGGGAG
*** *
43619716 CCTCGAGCAGCATCTTCAAC
66 CCTCGAGCAGCATAGGCACC
* * * * * * * ** * *
43619736 TTGGTGCAT-AGATGTACAGTAGCCTCAAGCAGCATC-AGGACCTTGGT-AATTGGATGTGCGGT
1 TTGGTGC-TGGGATGTGCGGGAGCCTCGAGCCGCATCGA-CACCTTGGTGGCTCGGATGTGCGGG
* * *
43619798 AGACTCGAGCACCATCA-GCAGC
64 AGCCTCGAGCAGCAT-AGGCACC
* * * * * * * *
43619820 TTGGCTGGTCGGATGTGCTGGAGCCTGGAGCAGCATCCG-CCCCTCGGT-GCTGGGATGTGCGGG
1 TTGG-TGCTGGGATGTGCGGGAGCCTCGAGCCGCAT-CGACACCTTGGTGGCTCGGATGTGCGGG
* * *
43619883 AGCCTCGAGCAGTATCGCCACC
64 AGCCTCGAGCAGCATAGGCACC
* * * * * **
43619905 TTGATGCTGGGATGTGTGGGAGCGTCGAGCCACATCGGCACCTTGGTGGCTCGGATGTATGGGAG
1 TTGGTGCTGGGATGTGCGGGAGCCTCGAGCCGCATCGACACCTTGGTGGCTCGGATGTGCGGGAG
*
43619970 CCTCGAGCACCATCAGG-ACC
66 CCTCGAGCAGCAT-AGGCACC
43619990 TTGGTGCT
1 TTGGTGCT
43619998 NNNNNNNNNN
Statistics
Matches: 267, Mismatches: 68, Indels: 25
0.74 0.19 0.07
Matches are distributed among these distances:
83 2 0.01
84 62 0.23
85 165 0.62
86 35 0.13
87 3 0.01
ACGTcount: A:0.17, C:0.26, G:0.35, T:0.21
Consensus pattern (85 bp):
TTGGTGCTGGGATGTGCGGGAGCCTCGAGCCGCATCGACACCTTGGTGGCTCGGATGTGCGGGAG
CCTCGAGCAGCATAGGCACC
Found at i:43619996 original size:127 final size:124
Alignment explanation
Indices: 43619565--43619997 Score: 354
Period size: 127 Copynumber: 3.4 Consensus size: 124
43619555 NNNNNNNNNN
* ** * * *
43619565 TTGGT-GCTTGGATGTGCGGGAGCCTCG-GCCACCATCGGCAACCTTGGTGGCCCAGATGTGCGG
1 TTGGTGGCTCGGATGTATGGGAGCCTCGAG-CAGCATCAGC-ACCTTGGT-G-CTAGATGTGCGG
* * *
43619628 GAGCCTCGAGCAGCATAGGCACCTTGGTGCTGGGATGTGCGGGAGCCTCGAGCCGCATCGACACC
62 GAGCCTCGAGCAGCAT-CGCACCTTGGTGCTGGGATGTGCGGGAG-CTCGAGCCACATCGGCACC
* * ** ** * * * *
43619693 TTAGTGGCTCGGGTGTGCGGGAGCCTCGAGCAGCATCTTCAACTTGGTGCATAGATGTACAGTAG
1 TTGGTGGCTCGGATGTATGGGAGCCTCGAGCAGCATCAGCACCTTGGTGC-TAGATGTGCGGGAG
* * ** * * * *
43619758 CCTCAAGCAGCATCAGGACCTTGGTAATTGGATGTGCGGTAGACTCGAG-CACCATCAGCAGC
65 CCTCGAGCAGCATC-GCACCTTGGTGCTGGGATGTGCGGGAG-CTCGAGCCA-CATCGGCACC
* * * * * *
43619820 TTGGCTGG-TCGGATGTGCT-GGAGCCTGGAGCAGCATCCGCCCCTCGGTGCTGGGATGTGCGGG
1 TTGG-TGGCTCGGATGT-ATGGGAGCCTCGAGCAGCATCAGCACCTTGGTGCT-AGATGTGCGGG
* * *
43619883 AGCCTCGAGCAGTATCGCCACCTTGATGCTGGGATGTGTGGGAGCGTCGAGCCACATCGGCACC
63 AGCCTCGAGCAGCATCG-CACCTTGGTGCTGGGATGTGCGGGAGC-TCGAGCCACATCGGCACC
* *
43619947 TTGGTGGCTCGGATGTATGGGAGCCTCGAGCACCATCAGGACCTTGGTGCT
1 TTGGTGGCTCGGATGTATGGGAGCCTCGAGCAGCATCAGCACCTTGGTGCT
43619998 NNNNNNNNNN
Statistics
Matches: 237, Mismatches: 55, Indels: 27
0.74 0.17 0.08
Matches are distributed among these distances:
126 9 0.04
127 184 0.78
128 16 0.07
129 27 0.11
130 1 0.00
ACGTcount: A:0.17, C:0.26, G:0.35, T:0.21
Consensus pattern (124 bp):
TTGGTGGCTCGGATGTATGGGAGCCTCGAGCAGCATCAGCACCTTGGTGCTAGATGTGCGGGAGC
CTCGAGCAGCATCGCACCTTGGTGCTGGGATGTGCGGGAGCTCGAGCCACATCGGCACC
Found at i:43620778 original size:85 final size:85
Alignment explanation
Indices: 43620683--43622358 Score: 1392
Period size: 85 Copynumber: 19.8 Consensus size: 85
43620673 GGACTCGGAG
* * *
43620683 GTGCGGGAGCCTTGAGCACCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCAACAC
1 GTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCAGCAT
*
43620748 CGGCACCTTAGTGCTGGGAT
66 CGGCACCTTGGTGCTGGGAT
* * * * *
43620768 ATGCAGGAGCCTCGAGCAGCATCGGCACCTTGGTGGCCCGAATGTGCGGGAGCCTCGAGCAGCAT
1 GTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCAGCAT
*
43620833 AGGCACCTTGGTGCTGGGAT
66 CGGCACCTTGGTGCTGGGAT
* * * *
43620853 ATGCGGGAGCCTCGAGC-CGCATCGACACCTTGGTGGCTCGGATGTGTGGGAGCCTCGAGCACCA
1 GTGCGGGAGCCTCGAGCAC-CATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCAGCA
** * *
43620917 TCTTCAACTTGGTACAT-GGAT
65 TCGGCACCTTGGTGC-TGGGAT
* * * * ** * * * * *
43620938 GCGCAGTAGCCTCGAGCAGCATCAGG-ACCTTGGT-AATTGGATGTGCGGGGGACTCGAGTACCA
1 GTGCGGGAGCCTCGAGCACCATC-GGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCAGCA
*
43621001 TCGGCACCTTGGCTGGC-CGGAT
65 TCGGCACCTTGG-T-GCTGGGAT
* * * * * *
43621023 GTGCTGGAGCCTCGAGCAGCATCCGCACCTTGGT-GCTGGGATGTGCGGGAGCCTCGAGTAGTAT
1 GTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCAGCAT
* *
43621087 CGGCACCTTGGTTGTTCGGAT
66 CGGCACCTTGG-TGCTGGGAT
* ** * * *
43621108 GTCCAAGAGCCTCGAGCAGCATCGGCACCTTGGT-GCTGGGATGTG-GAGGAGCCTCGAGTC-GT
1 GTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGGCTCGGATGTGCG-GGAGCCTCGAG-CAGC
* *
43621170 ATCGGCACCTTGGGGGCTCGGAT
64 ATCGGCACCTT-GGTGCTGGGAT
* * *** * * * *
43621193 GTGTGGGAGCCTCGAGCAGCATTTTCAACTTGGT-GCAT-GGATGCGCAGTAGCCTCGAGCAGCA
1 GTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGGC-TCGGATGTGCGGGAGCCTCGAGCAGCA
* ** *
43621256 TTAGG-ACC-TGTGTAATTGGAT
65 -TCGGCACCTTG-GTGCTGGGAT
* * * *
43621277 GTGCGGGAGACTCGAGCACCATCGGTACCTTGGCTGGC-CGGATGTGCTGGAGCCTGGAGCAGCA
1 GTGCGGGAGCCTCGAGCACCATCGGCACCTTGG-TGGCTCGGATGTGCGGGAGCCTCGAGCAGCA
* *
43621341 TCCGCACCTTGGTTCTGGGAT
65 TCGGCACCTTGGTGCTGGGAT
** * * * *
43621362 GTGTAGGAGCCTCGAGC-CGTATCGGCACCTTGGGGGCTCGGATGTGTGGGAGCCT-TAGCAGCA
1 GTGCGGGAGCCTCGAGCAC-CATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCAGCA
* * *
43621425 TCGGAACCTTGGTCCTGGTAT
65 TCGGCACCTTGGTGCTGGGAT
* * * *
43621446 GTGCGGGAGCCTCGAGC-CGCATCGGCACCTTGGTGTCTCGAATGCGCGGAAGCCTCGAGCA-CT
1 GTGCGGGAGCCTCGAGCAC-CATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCAGC-
* *
43621509 ATCGGTACCTTGGTGATGGGAT
64 ATCGGCACCTTGGTGCTGGGAT
* * * * * * * ** **
43621531 CTGCGGGAGCCTCAAGCACCATTGGTACCTCGGT-GCTCGGATCTGAGGGAGCCTTAAGCCCCAT
1 GTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCAGCAT
*
43621595 CGGCACCTTGGTGGCTCGGAT
66 CGGCACCTTGGT-GCTGGGAT
* ** *
43621616 GAGC-GGAGCCTCGAGCGGCTTCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCAGCAT
1 GTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCAGCAT
* *
43621680 CGACACCTTGGTGCTGGAAT
66 CGGCACCTTGGTGCTGGGAT
* * * * * * *
43621700 GTGCAGGAGCCGCGAGC-CGCATCGGCACCTTGGTGGCTCAGATGTGCAGGAGACTCAAGCACCA
1 GTGCGGGAGCCTCGAGCAC-CATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCAGCA
* ** *
43621764 TTGGTTCCTTGGTGCTCGGAT
65 TCGGCACCTTGGTGCTGGGAT
* * * * * * *
43621785 GTGGGGGAGCCTCTAGC-CGCATCGGCACCTTGGTGGCTCAGATGTCCGAGAGACTCGAGCACCA
1 GTGCGGGAGCCTCGAGCAC-CATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCAGCA
* * *
43621849 TCGGTACCTCGGTGCTCGGAT
65 TCGGCACCTTGGTGCTGGGAT
* * *
43621870 CTGAGGGAGCCTCGAGCACCATCGGCACCTTGGTGGCTCGGATGAGC-GGAGCCTCGAGCAGCAT
1 GTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCAGCAT
**
43621934 CACCACCTTGGTGCTGGGAT
66 CGGCACCTTGGTGCTGGGAT
* * * *
43621954 GTGTGGGAGCCTCGAGC-CACATCGGAACCTTGGTGGCTCGGATGTGCGGTAGCCTCGAGCACCA
1 GTGCGGGAGCCTCGAGCAC-CATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCAGCA
** * * * *
43622018 TTTGTATCTTGGCGCTTGGAT
65 TCGGCACCTTGGTGCTGGGAT
* * * * *
43622039 GTGTGGGAGCCTCGAGCACCGTCGGTACCATGGTGGCTCGGATGTACGGGAGCCTCGAGCAGCAT
1 GTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCAGCAT
* **
43622104 CGGCACCCTGGTGCTTCGAT
66 CGGCACCTTGGTGCTGGGAT
** * * * * * * *
43622124 GTGTAGGAGCCTCGAGTAGCATCCGTACCTTAGT-GCTGGGATGTGCGGGAGCCTCCCCA-CAGC
1 GTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCT--CGAGCAGC
* **
43622187 --CGACACCTTGGTGGCTCAGAT
64 ATCGGCACCTTGGT-GCTGGGAT
* * * * ** * *
43622208 GCGCGGGAGCCTCGCGCAGCACCGGCACCCCGGTGGCTCGGATGTGCCGGAGCCCCGAGCAGCAT
1 GTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCAGCAT
* * * * *
43622273 CTGCACCTAGGAGGTCGGAT
66 CGGCACCTTGGTGCTGGGAT
* ** * * *
43622293 GTGCCGGAGCCTCGAGCACCATCCACACCTTGGTGCCTCGGATGTGCAGGAGCCTCGAGCACCAT
1 GTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCAGCAT
43622358 C
66 C
43622359 CGCAACTTTG
Statistics
Matches: 1279, Mismatches: 269, Indels: 86
0.78 0.16 0.05
Matches are distributed among these distances:
83 14 0.01
84 326 0.25
85 913 0.71
86 26 0.02
ACGTcount: A:0.17, C:0.28, G:0.35, T:0.21
Consensus pattern (85 bp):
GTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCAGCAT
CGGCACCTTGGTGCTGGGAT
Found at i:43620956 original size:127 final size:126
Alignment explanation
Indices: 43620618--43622358 Score: 1306
Period size: 127 Copynumber: 13.7 Consensus size: 126
43620608 NNNNNNNNGT
* * ** * * * * ** *
43620618 ATCGGTACCTTGGTGGCTCAGATGACCTGGAGACTCAAGCATCATCAACACCATGG-GACTCGGA
1 ATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTG-CTCGGA
* * * *
43620682 GGTGCGGGAGCCTTGAGCACCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCAAC
65 TGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGT-GCTCGGATGTGCGGGAGCCTCGAGC-CC
* * * * * * *
43620746 ACCGGCACCTTAGT-GCTGGGATATGCAGGAGCCTCGAGCAGCATCGGCACCTTGGTGGCCCGAA
1 ATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGT-GCTCGGA
* * *
43620810 TGTGCGGGAGCCTCGAGCAGCATAGGCACCTTGGTGCTGGGATATGCGGGAGCCTCGAGCCGC
65 TGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCC-C
* * * ** * *
43620873 ATCGACACCTTGGTGGCTCGGATGTGTGGGAGCCTCGAGCACCATCTTCAACTTGGTACAT-GGA
1 ATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGC-TCGGA
* * * ** * * * *
43620937 TGCGCAGTAGCCTCGAGCAGCATCAGG-ACCTTGGTAATTGGATGTGCGGGGGACTCGAGTACC
65 TGTGCGGGAGCCTCGAGCAGCATC-GGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAG-CCC
* * *
43621000 ATCGGCACCTTGGCTGGC-CGGATGTGCTGGAGCCTCGAGCAGCATCCGCACCTTGGTGCTGGGA
1 ATCGGCACCTTGG-TGGCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGCTCGGA
* * * * ** *
43621064 TGTGCGGGAGCCTCGAGTAGTATCGGCACCTTGGTTGTTCGGATGTCCAAGAGCCTCGAGCAGC
65 TGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGG-TGCTCGGATGTGCGGGAGCCTCGAGC-CC
* * *
43621128 ATCGGCACCTTGGT-GCTGGGATGTG-GAGGAGCCTCGAGTC-GTATCGGCACCTTGGGGGCTCG
1 ATCGGCACCTTGGTGGCTCGGATGTGCG-GGAGCCTCGAG-CAGCATCGGCACCTT-GGTGCTCG
* *** * * * * *
43621190 GATGTGTGGGAGCCTCGAGCAGCATTTTCAACTTGGTGCAT-GGATGCGCAGTAGCCTCGAGCAG
63 GATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGC-TCGGATGTGCGGGAGCCTCGAGC-C
43621254 C
126 C
* ** * * * *
43621255 ATTAGG-ACC-T-GTGTAATTGGATGTGCGGGAGACTCGAGCACCATCGGTACCTTGGCTGGC-C
1 A-TCGGCACCTTGGTG-GCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGG-T-GCTC
* * * * * **
43621316 GGATGTGCTGGAGCCTGGAGCAGCATCCGCACCTTGGTTCTGGGATGTGTAGGAGCCTCGAGCCG
62 GGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCC-
*
43621381 T
126 C
* * * * *
43621382 ATCGGCACCTTGGGGGCTCGGATGTGTGGGAGCCT-TAGCAGCATCGGAACCTTGGTCCT-GGTA
1 ATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGCTCGG-A
* * * * *
43621445 TGTGCGGGAGCCTCGAGCCGCATCGGCACCTTGGTGTCTCGAATGCGCGGAAGCCTCGAGCACT
65 TGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTG-CTCGGATGTGCGGGAGCCTCGAGC-CC
* * * * * * * * *
43621509 ATCGGTACCTTGGT-GATGGGATCTGCGGGAGCCTCAAGCACCATTGGTACCTCGGTGCTCGGAT
1 ATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGCTCGGAT
* * ** ** * *
43621573 CTGAGGGAGCCTTAAGCCCCATCGGCACCTTGGTGGCTCGGATGAGC-GGAGCCTCGAGCGGC
66 GTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGT-GCTCGGATGTGCGGGAGCCTCGAGC-CC
* *
43621635 TTCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCAGCATCGACACCTTGGTGCT-GGAA
1 ATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGCTCGG-A
* * * * * * *
43621699 TGTGCAGGAGCCGCGAGCCGCATCGGCACCTTGGTGGCTCAGATGTGCAGGAGACTCAAGCACC
65 TGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGT-GCTCGGATGTGCGGGAGCCTCGAGC-CC
* ** * * * *
43621763 ATTGGTTCCTTGGT-GCTCGGATGTGGGGGAGCCTCTAGCCGCATCGGCACCTTGGTGGCTCAGA
1 ATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGT-GCTCGGA
* * * * * * * *
43621827 TGTCCGAGAGACTCGAGCACCATCGGTACCTCGGTGCTCGGATCTGAGGGAGCCTCGAGCACC
65 TGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGC-CC
* ** *
43621890 ATCGGCACCTTGGTGGCTCGGATGAGC-GGAGCCTCGAGCAGCATCACCACCTTGGTGCTGGGAT
1 ATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGCTCGGAT
* * *
43621954 GTGTGGGAGCCTCGAGCCA-CATCGGAACCTTGGTGGCTCGGATGTGCGGTAGCCTCGAGCACC
66 GTGCGGGAGCCTCGAG-CAGCATCGGCACCTTGGT-GCTCGGATGTGCGGGAGCCTCGAGC-CC
** * * * * * * * * *
43622017 ATTTGTATCTTGG-CGCTTGGATGTGTGGGAGCCTCGAGCACCGTCGGTACCATGGTGGCTCGGA
1 ATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGT-GCTCGGA
* * ** **
43622081 TGTACGGGAGCCTCGAGCAGCATCGGCACCCTGGTGCTTC-GATGTGTAGGAGCCTCGAGTAGC
65 TGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGC-TCGGATGTGCGGGAGCCTCGAG-CCC
* * * * * * *
43622144 ATCCGTACCTTAGT-GCTGGGATGTGCGGGAGCCTCCCCA-CAGC--CGACACCTTGGTGGCTCA
1 ATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCT--CGAGCAGCATCGGCACCTTGGT-GCTCG
* * * ** * * *
43622205 GATGCGCGGGAGCCTCGCGCAGCACCGGCACCCCGGTGGCTCGGATGTGCCGGAGCCCCGAGCAG
63 GATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGT-GCTCGGATGTGCGGGAGCCTCGAGC-C
43622270 C
126 C
* * * * * **
43622271 ATCTGCACCTAGGAGG-TCGGATGTGCCGGAGCCTCGAGCACCATCCACACCTTGGTGCCTCGGA
1 ATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTG-CTCGGA
* *
43622335 TGTGCAGGAGCCTCGAGCACCATC
65 TGTGCGGGAGCCTCGAGCAGCATC
43622359 CGCAACTTTG
Statistics
Matches: 1267, Mismatches: 286, Indels: 120
0.76 0.17 0.07
Matches are distributed among these distances:
125 7 0.01
126 178 0.14
127 759 0.60
128 317 0.25
129 6 0.00
ACGTcount: A:0.17, C:0.28, G:0.35, T:0.21
Consensus pattern (126 bp):
ATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGCTCGGAT
GTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCCC
Found at i:43621163 original size:212 final size:212
Alignment explanation
Indices: 43620676--43622358 Score: 1386
Period size: 212 Copynumber: 7.9 Consensus size: 212
43620666 CACCATGGGA
* *
43620676 CTCGGAGGTGCGGGAGCCTTGAGCACCATCGGCACCTTGGTGGCTCGGATGTGCG-GGAGCCTCG
1 CTCGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGT-GCTCGGATGTG-GAGGAGCCTCG
* * * * * *
43620740 AGCAACACCGGCACCTTAGTGCTGGGATATGCAGGAGCCTCGAGCAGCATCGGCACCTTGGTGGC
64 AGCAGCATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGGC
* * * *
43620805 CCGAATGTGCGGGAGCCTCGAGCAGCATAGGCACCTTGGTGCTGGGATATGCGGGAGCCTCGAGC
129 TCGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGCTGGGATGTGCGGGAGCCTCGAGC
* * *
43620870 CGCATCGACACCTTGGTGG
194 AGCATCGGCACCTTGGTTG
* ** * * * * *
43620889 CTCGGATGTGTGGGAGCCTCGAGCACCATCTTCAACTTGGTACAT-GGATGCGCAGTAGCCTCGA
1 CTCGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGC-TCGGATGTGGAGGAGCCTCGA
** * * * * *
43620953 GCAGCATCAGG-ACCTTGGTAATTGGATGTGCGGGGGACTCGAGTACCATCGGCACCTTGGCTGG
65 GCAGCATC-GGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGG-TGG
* *
43621017 C-CGGATGTGCTGGAGCCTCGAGCAGCATCCGCACCTTGGTGCTGGGATGTGCGGGAGCCTCGAG
128 CTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGCTGGGATGTGCGGGAGCCTCGAG
* *
43621081 TAGTATCGGCACCTTGGTTG
193 CAGCATCGGCACCTTGGTTG
* * ** * *
43621101 TTCGGATGTCCAAGAGCCTCGAGCAGCATCGGCACCTTGGTGCTGGGATGTGGAGGAGCCTCGAG
1 CTCGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTCGGATGTGGAGGAGCCTCGAG
* * * *** *
43621166 TC-GTATCGGCACCTTGGGGGCTCGGATGTGTGGGAGCCTCGAGCAGCATTTTCAACTTGGT-GC
66 -CAGCATCGGCACCTT-GGTGCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGGC
* * * * ** * *
43621229 AT-GGATGCGCAGTAGCCTCGAGCAGCATTAGG-ACC-TGTGTAATTGGATGTGCGGGAGACTCG
129 -TCGGATGTGCGGGAGCCTCGAGCAGCA-TCGGCACCTTG-GTGCTGGGATGTGCGGGAGCCTCG
* * *
43621291 AGCACCATCGGTACCTTGGCTGG
191 AGCAGCATCGGCACCTTGG-TTG
* * * * * * *
43621314 C-CGGATGTGCTGGAGCCTGGAGCAGCATCCGCACCTTGGTTCTGGGATGTGTAGGAGCCTCGAG
1 CTCGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTCGGATGTGGAGGAGCCTCGAG
* * * * * * *
43621378 CCGTATCGGCACCTTGGGGGCTCGGATGTGTGGGAGCCT-TAGCAGCATCGGAACCTTGGT-CCT
66 CAGCATCGGCACCTT-GGTGCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGGCT
* * * * *
43621441 -GGTATGTGCGGGAGCCTCGAGCCGCATCGGCACCTTGGTGTCTCGAATGCGCGGAAGCCTCGAG
130 CGG-ATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTG-CTGGGATGTGCGGGAGCCTCGAG
*
43621505 CA-CTATCGGTACCTTGG-TG
193 CAGC-ATCGGCACCTTGGTTG
* * * * * * * * **
43621524 ATGGGATCTGCGGGAGCCTCAAGCACCATTGGTACCTCGGTGCTCGGATCT-GAGGGAGCCTTAA
1 CTCGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTCGGATGTGGA-GGAGCCTCGA
** * * *
43621588 GCCCCATCGGCACCTTGGTGGCTCGGATGAGC-GGAGCCTCGAGCGGCTTCGGCACCTTGGTGGC
65 GCAGCATCGGCACCTTGGT-GCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGGC
* * * *
43621652 TCGGATGTGCGGGAGCCTCGAGCAGCATCGACACCTTGGTGCTGGAATGTGCAGGAGCCGCGAGC
129 TCGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGCTGGGATGTGCGGGAGCCTCGAGC
* *
43621717 CGCATCGGCACCTTGGTGG
194 AGCATCGGCACCTTGGTTG
* * * * * ** * *
43621736 CTCAGATGTGCAGGAGACTCAAGCACCATTGGTTCCTTGGTGCTCGGATGTGGGGGAGCCTCTAG
1 CTCGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTCGGATGTGGAGGAGCCTCGAG
* * * * * * * *
43621801 CCGCATCGGCACCTTGGTGGCTCAGATGTCCGAGAGACTCGAGCACCATCGGTACCTCGGT-GCT
66 CAGCATCGGCACCTTGGT-GCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGGCT
* * * * *
43621865 CGGATCTGAGGGAGCCTCGAGCACCATCGGCACCTTGGTGGCTCGGATGAGC-GGAGCCTCGAGC
130 CGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGT-GCTGGGATGTGCGGGAGCCTCGAGC
**
43621929 AGCATCACCACCTTGG-TG
194 AGCATCGGCACCTTGGTTG
* * * *
43621947 CTGGGATGTGTGGGAGCCTCGAGC-CACATCGGAACCTTGGTGGCTCGGATGTGCG-GTAGCCTC
1 CTCGGATGTGCGGGAGCCTCGAGCAC-CATCGGCACCTTGGT-GCTCGGATGTG-GAGGAGCCTC
* ** * * * * * * * * *
43622010 GAGCACCATTTGTATCTTGGCGCTTGGATGTGTGGGAGCCTCGAGCACCGTCGGTACCATGGTGG
63 GAGCAGCATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGG
* * ** **
43622075 CTCGGATGTACGGGAGCCTCGAGCAGCATCGGCACCCTGGTGCTTCGATGTGTAGGAGCCTCGAG
128 CTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGCTGGGATGTGCGGGAGCCTCGAG
* * * *
43622140 TAGCATCCGTACCTTAG-TG
193 CAGCATCGGCACCTTGGTTG
* ** * * * *
43622159 CTGGGATGTGCGGGAGCCTC-CCCA-CAGCCGACACCTTGGTGGCTCAGATGCGCG-GGAGCCTC
1 CTCGGATGTGCGGGAGCCTCGAGCACCA-TCGGCACCTTGGT-GCTCGGATGTG-GAGGAGCCTC
* * ** * * * * *
43622221 GCGCAGCACCGGCACCCCGGTGGCTCGGATGTGCCGGAGCCCCGAGCAGCATCTGCACCTAGGAG
63 GAGCAGCATCGGCACCTTGGT-GCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTG
* * ** * *
43622286 G-TCGGATGTGCCGGAGCCTCGAGCACCATCCACACCTTGGTGCCTCGGATGTGCAGGAGCCTCG
127 GCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTG-CTGGGATGTGCGGGAGCCTCG
*
43622350 AGCACCATC
191 AGCAGCATC
43622359 CGCAACTTTG
Statistics
Matches: 1176, Mismatches: 255, Indels: 79
0.78 0.17 0.05
Matches are distributed among these distances:
210 20 0.02
211 313 0.27
212 730 0.62
213 113 0.10
ACGTcount: A:0.17, C:0.28, G:0.35, T:0.21
Consensus pattern (212 bp):
CTCGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTCGGATGTGGAGGAGCCTCGAG
CAGCATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGGCTC
GGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGCTGGGATGTGCGGGAGCCTCGAGCAG
CATCGGCACCTTGGTTG
Found at i:43621424 original size:169 final size:167
Alignment explanation
Indices: 43620683--43622362 Score: 918
Period size: 169 Copynumber: 9.9 Consensus size: 167
43620673 GGACTCGGAG
* * * * ** *
43620683 GTGCGGGAGCCTTGAGCAC-CATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCAACA
1 GTGCAGGAGCCTCGAGC-CGCATCGGCACCTTGGGGGCTCGGATGTGAGGGAGCCTTAAGCAGCA
* * * * * * * * *
43620747 CCGGCACCTTAGTGCTGGGATATGCAGGAGCCTCGAGCAGCATCGGCACCTTGGTGGCCCGAATG
65 TCGGAACCTTGGT-CTTGGATGTGCGGGAGCCTCGAGC-CCATCGGCACCTTGGTGGCTCGGATG
**
43620812 TGCGGGAGCCTCGAGCAGCATAGGCACCTTGGTGCTGGGAT
128 TGC-GGAGCCTCGAGCAGCATCCGCACCTTGGTGCTGGGAT
* * * * * ** *
43620853 ATGCGGGAGCCTCGAGCCGCATCGACACCTTGGTGGCTCGGATGTGTGGGAGCCTCGAGCACCAT
1 GTGCAGGAGCCTCGAGCCGCATCGGCACCTTGGGGGCTCGGATGTGAGGGAGCCTTAAGCAGCAT
** * * * * * ** *
43620918 CTTCAA-CTTGGTACATGGATGCGCAGTAGCCTCGAGCAGCATCAGG-ACCTTGGT-AATTGGAT
66 C-GGAACCTTGGT-CTTGGATGTGCGGGAGCCTCGAGC-CCATC-GGCACCTTGGTGGCTCGGAT
* * * * * *
43620980 GTGCGGGGGACTCGAGTACCATCGGCACCTTGGCTGGC-CGGAT
127 GTGC-GGAGCCTCGAGCAGCATCCGCACCTTGG-T-GCTGGGAT
* * * * * * ** * *
43621023 GTGCTGGAGCCTCGAGCAGCATCCGCACCTT-GGTGCTGGGATGTGCGGGAGCCTCGAGTAGTAT
1 GTGCAGGAGCCTCGAGCCGCATCGGCACCTTGGGGGCTCGGATGTGAGGGAGCCTTAAGCAGCAT
* * * ** * *
43621087 CGGCACCTTGGTTGTTCGGATGTCCAAGAGCCTCGAGCAGCATCGGCACCTTGGT-GCTGGGATG
66 CGGAACCTTGG-TCTT-GGATGTGCGGGAGCCTCGAGC-CCATCGGCACCTTGGTGGCTCGGATG
* * * * *
43621151 TGGAGGAGCCTCGAGTC-GTATCGGCACCTTGGGGGCTCGGAT
128 T-GCGGAGCCTCGAG-CAGCATCCGCACCTT-GGTGCTGGGAT
** * *** * * * * **
43621193 GTGTGGGAGCCTCGAGCAGCATTTTCAACTT-GGTGCAT-GGATGCGCA-GTAGCCTCGAGCAGC
1 GTGCAGGAGCCTCGAGCCGCATCGGCACCTTGGGGGC-TCGGATGTG-AGGGAGCCTTAAGCAGC
* * * *
43621255 ATTAGG-ACC-TGTGTAATTGGATGTGCGGGAGACTCGAGCACCATCGGTACCTTGGCTGGC-CG
64 A-TCGGAACCTTG-GT-CTTGGATGTGCGGGAGCCTCGAGC-CCATCGGCACCTTGG-TGGCTCG
* *
43621317 GATGTGCTGGAGCCTGGAGCAGCATCCGCACCTTGGTTCTGGGAT
124 GATGTGC-GGAGCCTCGAGCAGCATCCGCACCTTGGTGCTGGGAT
* * *
43621362 GTGTAGGAGCCTCGAGCCGTATCGGCACCTTGGGGGCTCGGATGTGTGGGAGCCTT-AGCAGCAT
1 GTGCAGGAGCCTCGAGCCGCATCGGCACCTTGGGGGCTCGGATGTGAGGGAGCCTTAAGCAGCAT
* * * *
43621426 CGGAACCTTGGTCCTGGTATGTGCGGGAGCCTCGAGCCGCATCGGCACCTTGGTGTCTCGAATGC
66 CGGAACCTTGGTCTTGG-ATGTGCGGGAGCCTCGAGCC-CATCGGCACCTTGGTGGCTCGGATGT
* * *
43621491 GCGGAAGCCTCGAGCA-CTATCGGTACCTTGGTGATGGGAT
129 GCGG-AGCCTCGAGCAGC-ATCCGCACCTTGGTGCTGGGAT
* * * * * * * * **
43621531 CTGCGGGAGCCTCAAGCAC-CATTGGTACC-TCGGTGCTCGGATCTGAGGGAGCCTTAAGCCCCA
1 GTGCAGGAGCCTCGAGC-CGCATCGGCACCTTGGGGGCTCGGATGTGAGGGAGCCTTAAGCAGCA
* * * * *
43621594 TCGGCACCTTGGTGGCTCGGATGAGC-GGAGCCTCGAGCGGCTTCGGCACCTTGGTGGCTCGGAT
65 TCGGAACCTTGGT--CTTGGATGTGCGGGAGCCTCGAGC-CCATCGGCACCTTGGTGGCTCGGAT
*
43621658 GTGCGGGAGCCTCGAGCAGCAT-CGACACCTTGGTGCTGGAAT
127 GTGC-GGAGCCTCGAGCAGCATCCG-CACCTTGGTGCTGGGAT
* * * * * *
43621700 GTGCAGGAGCCGCGAGCCGCATCGGCACCTTGGTGGCTCAGATGTGCA-GGAGACTCAAGCACCA
1 GTGCAGGAGCCTCGAGCCGCATCGGCACCTTGGGGGCTCGGATGTG-AGGGAGCCTTAAGCAGCA
* ** * * * *
43621764 TTGGTTCCTTGGTGCTCGGATGTGGGGGAGCCTCTAGCCGCATCGGCACCTTGGTGGCTCAGATG
65 TCGGAACCTTGGT-CTTGGATGTGCGGGAGCCTCGAGCC-CATCGGCACCTTGGTGGCTCGGATG
* * * * * * *
43621829 TCCGAGAGACTCGAGCACCATCGGTACCTCGGTGCTCGGAT
128 TGCG-GAGCCTCGAGCAGCATCCGCACCTTGGTGCTGGGAT
* * **
43621870 CTG-AGGGAGCCTCGAGCAC-CATCGGCACCTTGGTGGCTCGGA--TGAGCGGAGCCTCGAGCAG
1 GTGCA-GGAGCCTCGAGC-CGCATCGGCACCTTGGGGGCTCGGATGTGAG-GGAGCCTTAAGCAG
*** * * *
43621931 CATCACCACCTTGGTGCTGGGATGTGTGGGAGCCTCGAGCCACATCGGAACCTTGGTGGCTCGGA
63 CATCGGAACCTTGGT-CTTGGATGTGCGGGAGCCTCGAGCC-CATCGGCACCTTGGTGGCTCGGA
* ** * * * *
43621996 TGTGCGGTAGCCTCGAGCACCATTTGTATCTTGGCGCTTGGAT
126 TGTGCGG-AGCCTCGAGCAGCATCCGCACCTTGGTGCTGGGAT
** * * * * **
43622039 GTGTGGGAGCCTCGAGCAC-CGTCGGTACCATGGTGGCTCGGATGT-ACGGGAGCCTCGAGCAGC
1 GTGCAGGAGCCTCGAGC-CGCATCGGCACCTTGGGGGCTCGGATGTGA-GGGAGCCTTAAGCAGC
* * * ** ** * * * *
43622102 ATCGGCACCCTGGTGCTTCGATGTGTAGGAGCCTCGAGTAGCATCCGTACCTTAGT-GCTGGGAT
64 ATCGGAACCTTGGT-CTTGGATGTGCGGGAGCCTCGAG-CCCATCGGCACCTTGGTGGCTCGGAT
** * **
43622166 GTGCGGGAGCCTC-CCCA-CAGCCGACACCTTGGTGGCTCAGAT
127 GTGC-GGAGCCTCGAGCAGCATCCG-CACCTTGGT-GCTGGGAT
* * * * * ** * ** ***
43622208 GCGCGGGAGCCTCGCGCAGCACCGGCACCCCGGTGGCTCGGATGTGCCGGAGCCCCGAGCAGCAT
1 GTGCAGGAGCCTCGAGCCGCATCGGCACCTTGGGGGCTCGGATGTGAGGGAGCCTTAAGCAGCAT
* * * ** * * ** *
43622273 CTGCACCTAGGAGGTCGGATGTGCCGGAGCCTCGAGCACCATCCACACCTTGGTGCCTCGGATGT
66 CGGAACCTTGG-TCTTGGATGTGCGGGAGCCTCGAGC-CCATCGGCACCTTGGTGGCTCGGATGT
*
43622338 GCAGGAGCCTCGAGCACCATCCGCA
129 GC-GGAGCCTCGAGCAGCATCCGCA
43622363 ACTTTGGCCC
Statistics
Matches: 1192, Mismatches: 251, Indels: 133
0.76 0.16 0.08
Matches are distributed among these distances:
167 4 0.00
168 49 0.04
169 595 0.50
170 513 0.43
171 26 0.02
172 5 0.00
ACGTcount: A:0.17, C:0.28, G:0.35, T:0.21
Consensus pattern (167 bp):
GTGCAGGAGCCTCGAGCCGCATCGGCACCTTGGGGGCTCGGATGTGAGGGAGCCTTAAGCAGCAT
CGGAACCTTGGTCTTGGATGTGCGGGAGCCTCGAGCCCATCGGCACCTTGGTGGCTCGGATGTGC
GGAGCCTCGAGCAGCATCCGCACCTTGGTGCTGGGAT
Found at i:43622894 original size:42 final size:41
Alignment explanation
Indices: 43622842--43622993 Score: 182
Period size: 42 Copynumber: 3.6 Consensus size: 41
43622832 TTGGTGGCTC
* *
43622842 GGATATGCGGGAGCCTCGAGCACCATCGGAACCTTAGTGCTT
1 GGATGTGCGGGAGCCTCGAGCACCATCGGAACCTT-GTGCTA
*
43622884 GGATGTGCGGGAGCCTCG-GCCACCATCGGCAACCTTGATGCTC
1 GGATGTGCGGGAGCCTCGAG-CACCATCGG-AACCTTG-TGCTA
*
43622927 GGATGTGCGGGAGCCTCGACCACCATC-GACACCTTGGTGCTA
1 GGATGTGCGGGAGCCTCGAGCACCATCGGA-ACCTT-GTGCTA
* *
43622969 GGATGTCCGGAAGCCTCGAGCACCA
1 GGATGTGCGGGAGCCTCGAGCACCA
43622994 AAGCTGAAGT
Statistics
Matches: 97, Mismatches: 7, Indels: 12
0.84 0.06 0.10
Matches are distributed among these distances:
41 2 0.02
42 59 0.61
43 36 0.37
ACGTcount: A:0.20, C:0.30, G:0.32, T:0.18
Consensus pattern (41 bp):
GGATGTGCGGGAGCCTCGAGCACCATCGGAACCTTGTGCTA
Found at i:43622993 original size:85 final size:86
Alignment explanation
Indices: 43622829--43622986 Score: 230
Period size: 85 Copynumber: 1.8 Consensus size: 86
43622819 AGCCTCAAGC
* * * *
43622829 ACCTTGGTGGCTCGGATATGCGGGAGCCTCGAGCACCATCGGAACCTTAGTGCTTGGATGTGCGG
1 ACCTTGATGGCTCGGATATGCGGGAGCCTCGACCACCATCGGAACCTTAGTGCTAGGATGTCCGG
*
43622894 GAGCCTCGGCCACCATCGGCA
66 AAGCCTCGGCCACCATCGGCA
* *
43622915 ACCTTGAT-GCTCGGATGTGCGGGAGCCTCGACCACCATC-GACACCTTGGTGCTAGGATGTCCG
1 ACCTTGATGGCTCGGATATGCGGGAGCCTCGACCACCATCGGA-ACCTTAGTGCTAGGATGTCCG
43622978 GAAGCCTCG
65 GAAGCCTCG
43622987 AGCACCAAAG
Statistics
Matches: 64, Mismatches: 7, Indels: 3
0.86 0.09 0.04
Matches are distributed among these distances:
84 2 0.03
85 55 0.86
86 7 0.11
ACGTcount: A:0.18, C:0.30, G:0.32, T:0.20
Consensus pattern (86 bp):
ACCTTGATGGCTCGGATATGCGGGAGCCTCGACCACCATCGGAACCTTAGTGCTAGGATGTCCGG
AAGCCTCGGCCACCATCGGCA
Found at i:43626497 original size:23 final size:23
Alignment explanation
Indices: 43626454--43626515 Score: 79
Period size: 23 Copynumber: 2.7 Consensus size: 23
43626444 CCGGCTGTGA
* *
43626454 TCCGGCGATCCATCCCGGCGGTGC
1 TCCGGTGATCCAT-CCGGCGGCGC
* *
43626478 TCCTGTGGTCCATCCGGCGGCGC
1 TCCGGTGATCCATCCGGCGGCGC
43626501 TCCGGTGATCCATCC
1 TCCGGTGATCCATCC
43626516 TGGTATATAG
Statistics
Matches: 32, Mismatches: 6, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
23 22 0.69
24 10 0.31
ACGTcount: A:0.08, C:0.40, G:0.31, T:0.21
Consensus pattern (23 bp):
TCCGGTGATCCATCCGGCGGCGC
Found at i:43626741 original size:85 final size:84
Alignment explanation
Indices: 43626618--43627256 Score: 761
Period size: 85 Copynumber: 7.5 Consensus size: 84
43626608 CACATGGCAG
* * *
43626618 CATCGGCACCTTGGTGGCTCAGATGTGTGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGA
1 CATCGGCACCTTGGT-GCTCGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTCGGA
*
43626683 TGTGCGGGAGCCTCGACCAC
65 TGTGCGGGAGCCTCGAGCAC
* * * * *
43626703 CATCGGCACCTTGGTGGCTCGGATATGCAGGAGACTCGAGCAGCATCGGCACCTTGGTGCTTGGA
1 CATCGGCACCTTGGT-GCTCGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTCGGA
*
43626768 TGTGCGGGAGCCTCGAGCAG
65 TGTGCGGGAGCCTCGAGCAC
* *
43626788 AATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGC-CGCATCGGCACCTCGGTGCT-GG
1 CATCGGCACCTTGGT-GCTCGGATGTGCGGGAGCCTCGAGCAC-CATCGGCACCTTGGTGCTCGG
43626851 AATGTGCGGGAGCC-CTGAGC-C
64 -ATGTGCGGGAGCCTC-GAGCAC
* * * * *
43626872 ACATCAGCACCTTGGTGCT-GGAATGTACGAGAGCCCCGAGC-CGCATCGGTACCTTGGTGGCTC
1 -CATCGGCACCTTGGTGCTCGG-ATGTGCGGGAGCCTCGAGCAC-CATCGGCACCTTGGT-GCTC
* * *
43626935 GGATGTGTGGGAGGCTCGAGCAG
62 GGATGTGCGGGAGCCTCGAGCAC
* * * * *
43626958 CATCCGTACCTTGGTACTTGGATGTGCGGGAGCCTCGGGCACCATCGGCACCTTGGTGGCTCGGA
1 CATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGT-GCTCGGA
* * * * *
43627023 TGAGCAGGAGCCCCGAGGAG
65 TGTGCGGGAGCCTCGAGCAC
*
43627043 CATCGGCACCTTGGTGCTGGGATGTGCGGGAGCCTCGAGC-CGCATCGGCACCTTGGTGGCTCGG
1 CATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCAC-CATCGGCACCTTGGT-GCTCGG
43627107 ATGTGCGGGAGCCTCGAGCAC
64 ATGTGCGGGAGCCTCGAGCAC
*
43627128 CATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGACCACCATCGGCAACCTTGGTGCTCGGA
1 CATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCACCATCGGC-ACCTTGGTGCTCGGA
*
43627193 TGTGCGGGAGCCTCGACCAC
65 TGTGCGGGAGCCTCGAGCAC
* * * * *
43627213 CATCGACACCTTGGTGCTAGGATGTCCAGAAGCCTCGAGCACCA
1 CATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCACCA
43627257 AAGCTGAAGT
Statistics
Matches: 482, Mismatches: 58, Indels: 28
0.85 0.10 0.05
Matches are distributed among these distances:
83 2 0.00
84 38 0.08
85 427 0.89
86 15 0.03
ACGTcount: A:0.16, C:0.29, G:0.35, T:0.19
Consensus pattern (84 bp):
CATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTCGGAT
GTGCGGGAGCCTCGAGCAC
Found at i:43627155 original size:297 final size:298
Alignment explanation
Indices: 43626617--43627228 Score: 907
Period size: 297 Copynumber: 2.1 Consensus size: 298
43626607 GCACATGGCA
* *
43626617 GCATCGGCACCTTGGTGGCTCAGATGTGTGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTGG
1 GCATCGGCACCTTGGTGGCTCAGATGTGTGGGAGCCTCGAGCACCATCCGCACCTTGGTACTTGG
*
43626682 ATGTGCGGGAGCCTCGACCACCATCGGCACCTTGGTGGCTCGGATATGCAGGAGACTCGAGCAGC
66 ATGTGCGGGAGCCTCGACCACCATCGGCACCTTGGTGGCTCGGATATGCAGGAGACCCGAGCAGC
*
43626747 ATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGAGCAGAATCGGCACCTTGGTGGCTCGGAT
131 ATCGGCACCTTGGTGCTGGGATGTGCGGGAGCCTCGAGCAGAATCGGCACCTTGGTGGCTCGGAT
43626812 GTGCGGGAGCCTCGAGCCGCATCGGCACCTCGGTGCTGGAATGTGCGGGAGCC-CTGAGCCA-CA
196 GTGCGGGAGCCTCGAGCCGCATCGGCACCTCGGTGCTGGAATGTGCGGGAGCCTC-GA-CCACCA
43626875 TCAGC-ACCTTGGTGCTGGAATGTACGAGAGCCCCGAGCC
259 TCAGCAACCTTGGTGCTGGAATGTACGAGAGCCCCGAGCC
* * * * *
43626914 GCATCGGTACCTTGGTGGCTCGGATGTGTGGGAGGCTCGAGCAGCATCCGTACCTTGGTACTTGG
1 GCATCGGCACCTTGGTGGCTCAGATGTGTGGGAGCCTCGAGCACCATCCGCACCTTGGTACTTGG
** * *
43626979 ATGTGCGGGAGCCTCGGGCACCATCGGCACCTTGGTGGCTCGGATGA-GCAGGAGCCCCGAGGAG
66 ATGTGCGGGAGCCTCGACCACCATCGGCACCTTGGTGGCTCGGAT-ATGCAGGAGACCCGAGCAG
* *
43627043 CATCGGCACCTTGGTGCTGGGATGTGCGGGAGCCTCGAGCCGCATCGGCACCTTGGTGGCTCGGA
130 CATCGGCACCTTGGTGCTGGGATGTGCGGGAGCCTCGAGCAGAATCGGCACCTTGGTGGCTCGGA
*
43627108 TGTGCGGGAGCCTCGAGCAC-CATCGGCACCTTGGTGCTCGG-ATGTGCGGGAGCCTCGACCACC
195 TGTGCGGGAGCCTCGAGC-CGCATCGGCACCTCGGTGCT-GGAATGTGCGGGAGCCTCGACCACC
* * * *
43627171 ATCGGCAACCTTGGTGCTCGG-ATGTGCGGGAGCCTCGA-CC
258 ATCAGCAACCTTGGTGCT-GGAATGTACGAGAGCCCCGAGCC
* *
43627211 ACCATCGACACCTTGGTG
1 -GCATCGGCACCTTGGTG
43627229 CTAGGATGTC
Statistics
Matches: 284, Mismatches: 23, Indels: 15
0.88 0.07 0.05
Matches are distributed among these distances:
296 3 0.01
297 235 0.83
298 44 0.15
299 2 0.01
ACGTcount: A:0.16, C:0.29, G:0.36, T:0.19
Consensus pattern (298 bp):
GCATCGGCACCTTGGTGGCTCAGATGTGTGGGAGCCTCGAGCACCATCCGCACCTTGGTACTTGG
ATGTGCGGGAGCCTCGACCACCATCGGCACCTTGGTGGCTCGGATATGCAGGAGACCCGAGCAGC
ATCGGCACCTTGGTGCTGGGATGTGCGGGAGCCTCGAGCAGAATCGGCACCTTGGTGGCTCGGAT
GTGCGGGAGCCTCGAGCCGCATCGGCACCTCGGTGCTGGAATGTGCGGGAGCCTCGACCACCATC
AGCAACCTTGGTGCTGGAATGTACGAGAGCCCCGAGCC
Found at i:43631400 original size:23 final size:24
Alignment explanation
Indices: 43631340--43631417 Score: 97
Period size: 24 Copynumber: 3.3 Consensus size: 24
43631330 CCAGTTAGGT
43631340 TCCCGGCGGTGCTCCGACGATCCA
1 TCCCGGCGGTGCTCCGACGATCCA
* *
43631364 TCCCGGCGGTGCTCGGGCGATCCA
1 TCCCGGCGGTGCTCCGACGATCCA
* *
43631388 T-CCGGCGGCGCTCCTG-TGATCCA
1 TCCCGGCGGTGCTCC-GACGATCCA
43631411 TCCCGGC
1 TCCCGGC
43631418 ATATAGAAAA
Statistics
Matches: 47, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
23 18 0.38
24 29 0.62
ACGTcount: A:0.09, C:0.41, G:0.32, T:0.18
Consensus pattern (24 bp):
TCCCGGCGGTGCTCCGACGATCCA
Found at i:43631592 original size:42 final size:42
Alignment explanation
Indices: 43631517--43631940 Score: 503
Period size: 42 Copynumber: 10.0 Consensus size: 42
43631507 ACATGGCAGT
*
43631517 ATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCAAC
1 ATCGGCACCTTGGT-GCTCGGATGTGCGGGAGCCTCGAGCACC
* * *
43631560 ATCGGCACCTTGGTGCTCGGCTGTGCGAGAGCCTCGACCACC
1 ATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCACC
* * * * *
43631602 ATCGACACCTTGGAGCTTC-GATGTGCGAGAGCCTCGACCAAC
1 ATCGGCACCTTGGTGC-TCGGATGTGCGGGAGCCTCGAGCACC
* **
43631644 ATCAGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCTTC
1 ATCGGCACCTTGGT-GCTCGGATGTGCGGGAGCCTCGAGCACC
* * *
43631687 ATCGGCACCTTGGTGCTGGGATGTGCGGGAGCCTCAAGCAGC
1 ATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCACC
* *
43631729 ATCGGCACCTTGGTGCCTCGGATGTGCCGGAGCCTCGAGCAGC
1 ATCGGCACCTTGGTG-CTCGGATGTGCGGGAGCCTCGAGCACC
* * * *
43631772 ATCGGCACCTTGGTGCTTGGATGTGGGGGAGCCTCGTGCCCC
1 ATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCACC
*
43631814 ATCGGCACCTTGGTGCTCGAATGTGCGGGAGCCTCG-GCTACC
1 ATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGC-ACC
* *
43631856 ATCGGTAACCTTAGTGCTC-GATGTGCGGGAGCCTCGAGCACC
1 ATCGG-CACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCACC
** * * **
43631898 ATCTACAACTTGGTGCTAGGATGTGCGCAAGCCTCGAGCACC
1 ATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCACC
43631940 A
1 A
43631941 AAGTTAAAGT
Statistics
Matches: 329, Mismatches: 44, Indels: 17
0.84 0.11 0.04
Matches are distributed among these distances:
41 11 0.03
42 216 0.66
43 102 0.31
ACGTcount: A:0.17, C:0.30, G:0.33, T:0.21
Consensus pattern (42 bp):
ATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCACC
Found at i:43631690 original size:85 final size:84
Alignment explanation
Indices: 43631517--43631940 Score: 469
Period size: 85 Copynumber: 5.0 Consensus size: 84
43631507 ACATGGCAGT
* *
43631517 ATCGGCACCTTGGTGGC-TCGGATGTGCGGGAGCCTCGAGCAACATCGGCACCTTGGTGCTCGGC
1 ATCGACACCTTGGT-GCTTC-GATGTGCGGGAGCCTCGAGCAACATCGGCACCTTGGTGCTCGGA
* *
43631581 TGTGCGAGAGCCTCGACCACC
64 TGTGCGGGAGCCTCGAGCACC
* * * *
43631602 ATCGACACCTTGGAGCTTCGATGTGCGAGAGCCTCGACCAACATCAGCACCTTGGTGGCTCGGAT
1 ATCGACACCTTGGTGCTTCGATGTGCGGGAGCCTCGAGCAACATCGGCACCTTGGT-GCTCGGAT
**
43631667 GTGCGGGAGCCTCGAGCTTC
65 GTGCGGGAGCCTCGAGCACC
* ** * *
43631687 ATCGGCACCTTGGTGCTGGGATGTGCGGGAGCCTCAAGCAGCATCGGCACCTTGGTGCCTCGGAT
1 ATCGACACCTTGGTGCTTCGATGTGCGGGAGCCTCGAGCAACATCGGCACCTTGGTG-CTCGGAT
* *
43631752 GTGCCGGAGCCTCGAGCAGC
65 GTGCGGGAGCCTCGAGCACC
* * * * ** *
43631772 ATCGGCACCTTGGTGCTTGGATGTGGGGGAGCCTCGTGCCCCATCGGCACCTTGGTGCTCGAATG
1 ATCGACACCTTGGTGCTTCGATGTGCGGGAGCCTCGAGCAACATCGGCACCTTGGTGCTCGGATG
43631837 TGCGGGAGCCTCG-GCTACC
66 TGCGGGAGCCTCGAGC-ACC
* * ** * *
43631856 ATCGGTA-ACCTTAGTGC-TCGATGTGCGGGAGCCTCGAGCACCATCTACAACTTGGTGCTAGGA
1 ATC-G-ACACCTTGGTGCTTCGATGTGCGGGAGCCTCGAGCAACATCGGCACCTTGGTGCTCGGA
**
43631919 TGTGCGCAAGCCTCGAGCACC
64 TGTGCGGGAGCCTCGAGCACC
43631940 A
1 A
43631941 AAGTTAAAGT
Statistics
Matches: 288, Mismatches: 44, Indels: 15
0.83 0.13 0.04
Matches are distributed among these distances:
83 2 0.01
84 115 0.40
85 171 0.59
ACGTcount: A:0.17, C:0.30, G:0.33, T:0.21
Consensus pattern (84 bp):
ATCGACACCTTGGTGCTTCGATGTGCGGGAGCCTCGAGCAACATCGGCACCTTGGTGCTCGGATG
TGCGGGAGCCTCGAGCACC
Found at i:43631732 original size:127 final size:123
Alignment explanation
Indices: 43631521--43631937 Score: 469
Period size: 127 Copynumber: 3.3 Consensus size: 123
43631511 GGCAGTATCG
*
43631521 GCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCAACATCGGCACCTTGGTGCTCGGCTGTGC
1 GCACCTTGGT-GCTCGGATGTGCGGGAGCCTCGAGCAACATCGGCACCTTGGTGCTCGGATGTGC
* * * *
43631586 GAGAGCCTCGACCACCATCGACACCTTGGAGCTTCGATGTGCGAGAGCCTCGACCAACATCA
65 GGGAGCCTC-AGCACCATCGACACCTTGGTGC-TCGATGTGCG-GAGCCTCGAGCAACATCA
** *
43631648 GCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCTTCATCGGCACCTTGGTGCTGGGATGTGC
1 GCACCTTGGT-GCTCGGATGTGCGGGAGCCTCGAGCAACATCGGCACCTTGGTGCTCGGATGTGC
* * * *
43631713 GGGAGCCTCAAGCAGCATCGGCACCTTGGTGCCTCGGATGTGCCGGAGCCTCGAGCAGCATCG
65 GGGAGCCTC-AGCACCATCGACACCTTGGTG-CTC-GATGTG-CGGAGCCTCGAGCAACATCA
* * * ** *
43631776 GCACCTTGGTGCTTGGATGTGGGGGAGCCTCGTGCCCCATCGGCACCTTGGTGCTCGAATGTGCG
1 GCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCAACATCGGCACCTTGGTGCTCGGATGTGCG
* * *
43631841 GGAGCCTCGGCTACCATCGGTA-ACCTTAGTGCTCGATGTGCGGGAGCCTCGAGCACCATCTA
66 GGAGCCTCAGC-ACCATC-G-ACACCTTGGTGCTCGATGTGC-GGAGCCTCGAGCAACATC-A
* * **
43631903 -CAACTTGGTGCTAGGATGTGCGCAAGCCTCGAGCA
1 GCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCA
43631938 CCAAAGTTAA
Statistics
Matches: 249, Mismatches: 33, Indels: 17
0.83 0.11 0.06
Matches are distributed among these distances:
125 1 0.00
126 53 0.21
127 152 0.61
128 41 0.16
129 2 0.01
ACGTcount: A:0.17, C:0.29, G:0.33, T:0.21
Consensus pattern (123 bp):
GCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCAACATCGGCACCTTGGTGCTCGGATGTGCG
GGAGCCTCAGCACCATCGACACCTTGGTGCTCGATGTGCGGAGCCTCGAGCAACATCA
Found at i:43632228 original size:24 final size:23
Alignment explanation
Indices: 43632201--43632266 Score: 87
Period size: 23 Copynumber: 2.8 Consensus size: 23
43632191 GTTCCTGGTT
*
43632201 GTGCTCCGGCGATCCATCTCGGTG
1 GTGCTCCGGCGATCCATC-CGGCG
43632225 GTGCTCCGGCGATCCATCCGGCG
1 GTGCTCCGGCGATCCATCCGGCG
* * *
43632248 GCGTTCCGGTGATCCATCC
1 GTGCTCCGGCGATCCATCC
43632267 CAGTATATAG
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
23 20 0.53
24 18 0.47
ACGTcount: A:0.09, C:0.36, G:0.32, T:0.23
Consensus pattern (23 bp):
GTGCTCCGGCGATCCATCCGGCG
Found at i:43632492 original size:85 final size:85
Alignment explanation
Indices: 43632369--43632922 Score: 692
Period size: 85 Copynumber: 6.5 Consensus size: 85
43632359 CACATGGCAG
* *
43632369 CATCGGCACCTTGGTGGCTCGGATGTGTGGGAACCTCGAGCACCATCGGCACCTTGGTGCTTGGA
1 CATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGA
43632434 TGTGCGGGAGCCTCGACCAC
66 TGTGCGGGAGCCTCGACCAC
* * * * *
43632454 CATCGGCACCTTGGTGGCTCAGATATGCGGGAGACTCGAGCAGCGTCGGCACCTTGGTGCTTGGA
1 CATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGA
*
43632519 TGTGCGGGAGCCTCGAGCA-
66 TGTGCGGGAGCCTCGACCAC
* * *
43632538 GAACTGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGC-CGCATCGACACCTTGGTGC-TG
1 CATC-GGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCAC-CATCGGCACCTTGGTGCTTG
*
43632601 GAATGTGCGGGAGCC-CTGAGCC-G
64 G-ATGTGCGGGAGCCTC-GA-CCAC
* * * * *
43632624 CATCGGCACCTTGGTGGCTCGGATGTGCGGGAGGCTCGAGTAGCATCCGCACCTTGGTACTTGGA
1 CATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGA
*
43632689 TGTGCGGGAGCCTCGAGCAC
66 TGTGCGGGAGCCTCGACCAC
* * * *
43632709 CATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCCCGAGGAGCATCGGCAGCTTGGTGC-TGGA
1 CATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTGG-
* *
43632773 ATGTACGGGAGCCTCGAGCC-G
65 ATGTGCGGGAGCCTCGA-CCAC
* * * *
43632794 CATCGGCACCTTCGTGGCTCAGATATGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTCGGA
1 CATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGA
43632859 TGTGCGGGAGCCTCGACCAC
66 TGTGCGGGAGCCTCGACCAC
** * * *
43632879 CATCGATACCTTGGT-GCTAGGATGTCCGGAAGCCTCGAGCACCA
1 CATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCACCA
43632923 AAGCTGAATT
Statistics
Matches: 401, Mismatches: 54, Indels: 29
0.83 0.11 0.06
Matches are distributed among these distances:
84 36 0.09
85 355 0.89
86 10 0.02
ACGTcount: A:0.16, C:0.29, G:0.36, T:0.20
Consensus pattern (85 bp):
CATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGA
TGTGCGGGAGCCTCGACCAC
Found at i:43633873 original size:24 final size:24
Alignment explanation
Indices: 43633839--43633915 Score: 84
Period size: 24 Copynumber: 3.2 Consensus size: 24
43633829 CCGGTTAGGT
* *
43633839 TCCCGGCGGTGCTCCGACGATCCA
1 TCCCGGTGGTGCTCCGGCGATCCA
* *
43633863 TCCCGGTGGTGCTCTGGCAATCCA
1 TCCCGGTGGTGCTCCGGCGATCCA
* * *
43633887 T-CCGGTGGCGCTCCGGTGATCTA
1 TCCCGGTGGTGCTCCGGCGATCCA
43633910 TCCCGG
1 TCCCGG
43633916 CATATAGAAA
Statistics
Matches: 43, Mismatches: 9, Indels: 2
0.80 0.17 0.04
Matches are distributed among these distances:
23 18 0.42
24 25 0.58
ACGTcount: A:0.10, C:0.36, G:0.31, T:0.22
Consensus pattern (24 bp):
TCCCGGTGGTGCTCCGGCGATCCA
Found at i:43634067 original size:42 final size:41
Alignment explanation
Indices: 43634019--43634166 Score: 172
Period size: 42 Copynumber: 3.5 Consensus size: 41
43634009 TGGCAGTATC
*
43634019 GGCACCTTAGGGCTCGGATGTGCGGGAGCCTCGAGCACCATT
1 GGCACCTT-GGGCTCGGATGTGCGGGAGCCTCGACCACCATT
* * * *
43634061 GGCACCTTCGTGCTCGGATGTGTGAGAGCCTCGACCACCATC
1 GGCACCTT-GGGCTCGGATGTGCGGGAGCCTCGACCACCATT
43634103 GGCACCTTGGAGCTTC-GATGTGCGGGAGCCTCGACCACCATT
1 GGCACCTTGG-GC-TCGGATGTGCGGGAGCCTCGACCACCATT
* *
43634145 AGCACATTGGTGGCTCGGATGT
1 GGCACCTT-G-GGCTCGGATGT
43634167 TTACAAGATC
Statistics
Matches: 89, Mismatches: 12, Indels: 9
0.81 0.11 0.08
Matches are distributed among these distances:
41 1 0.01
42 77 0.87
43 10 0.11
44 1 0.01
ACGTcount: A:0.17, C:0.29, G:0.32, T:0.22
Consensus pattern (41 bp):
GGCACCTTGGGCTCGGATGTGCGGGAGCCTCGACCACCATT
Found at i:43636885 original size:24 final size:24
Alignment explanation
Indices: 43636853--43636902 Score: 73
Period size: 24 Copynumber: 2.1 Consensus size: 24
43636843 CCGGTTAGGT
43636853 TCCCAGTGGTGCTCCGACGATCCA
1 TCCCAGTGGTGCTCCGACGATCCA
* **
43636877 TCCCGGTGGTGCTCCGGTGATCCA
1 TCCCAGTGGTGCTCCGACGATCCA
43636901 TC
1 TC
43636903 TGCCGGTGCT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.12, C:0.36, G:0.28, T:0.24
Consensus pattern (24 bp):
TCCCAGTGGTGCTCCGACGATCCA
Found at i:43637076 original size:43 final size:42
Alignment explanation
Indices: 43637025--43638079 Score: 1227
Period size: 43 Copynumber: 24.8 Consensus size: 42
43637015 GGAGTACATG
* *
43637025 GCAGCATCGGCACCTTGGTGGCTCGGATGTACGGGAGCCTCAA
1 GCAGCATCGGCACCTTGGT-GCTCGGATGTGCGGGAGCCTCGA
* * *
43637068 GCACCATCGGCACCTTGGTACTTGGATGTGCGGGAGCCTCGA
1 GCAGCATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGA
* * * * * * *
43637110 CCACCATTGCCACCTTGGTGGTTCGGATATGCGGGAGACTCGA
1 GCAGCATCGGCACCTTGGT-GCTCGGATGTGCGGGAGCCTCGA
* * * * * *
43637153 GCAGTATCGACACCTTGGTGCTTGGATGTACGGGTGTCTCGA
1 GCAGCATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGA
* *
43637195 GCAGAACCGGCACCTTGGTGGCTCGGATGTG-GGGAAGCCTCGA
1 GCAGCATCGGCACCTTGGT-GCTCGGATGTGCGGG-AGCCTCGA
* * * ** *
43637238 GCCGCATCAGCACCTTGGTGCTGGGATGTGCGGTTGCCACGA
1 GCAGCATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGA
* * *
43637280 GCCGTATCGGCACCTTGGTGGCTCGGATGTGCGGGAGACTCGA
1 GCAGCATCGGCACCTTGGT-GCTCGGATGTGCGGGAGCCTCGA
* **
43637323 GCAGCATCGGCATCTTGGTGCTTAGATGTGCGGGAGCCTCGA
1 GCAGCATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGA
*
43637365 GCAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCCCGA
1 GCAGCATCGGCACCTTGGT-GCTCGGATGTGCGGGAGCCTCGA
* *
43637408 GGAGCATCGGCACCTTGGTGCTGGGATGTGCGGGAGCCTCGA
1 GCAGCATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGA
* *
43637450 GCAGCATCGGCACCTTGGCGGCTCGGATGTACGGGAGCCTCGA
1 GCAGCATCGGCACCTTGG-TGCTCGGATGTGCGGGAGCCTCGA
* * * * *
43637493 GCACCGTCGGCAGCTTGGTGCTGGGATGTG-GGGAGACTCGA
1 GCAGCATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGA
*
43637534 GCAGCATCGGCACCTTGGTGGCTCAGATGTGCGGGAGCCTCGA
1 GCAGCATCGGCACCTTGGT-GCTCGGATGTGCGGGAGCCTCGA
* * * *
43637577 GCACCATCGGCACCTTGGTGCTTGGATGTGTGGGAGCCACGA
1 GCAGCATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGA
* * * * *
43637619 GCAGTATCGGCACTTTGGTGGCTCAGATGTGTGGGAGCCTGGA
1 GCAGCATCGGCACCTTGGT-GCTCGGATGTGCGGGAGCCTCGA
* *
43637662 GCACCATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGA
1 GCAGCATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGA
* * * **
43637704 GCAGAACCGGCACCTTGGTGCTGGGATGTGATGGAGCCTCGA
1 GCAGCATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGA
*
43637746 GCAGCATCGACACCTTGGTGCCTCGGATGTGCGGGAGCCTCGA
1 GCAGCATCGGCACCTTGGTG-CTCGGATGTGCGGGAGCCTCGA
* * * *
43637789 GCAGCATTGGCACCTTGGTGCTTGGATGTGGGGGAGCCTCGT
1 GCAGCATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGA
* * * *
43637831 GCACCATCGGCACATTGGTGGCTCGAATGTGCAGGAGCCTCGA
1 GCAGCATCGGCACCTTGGT-GCTCGGATGTGCGGGAGCCTCGA
* *
43637874 GCAGCATCGGTACCTTGGTGCTGGGATGTGCGGGAGCCTCGA
1 GCAGCATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGA
*
43637916 CCAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGA
1 GCAGCATCGGCACCTTGGT-GCTCGGATGTGCGGGAGCCTCGA
* * *
43637959 CCAGCATCGGCACCGTGGGGGCTCGGATGTGCGGGAGCCTCG-
1 GCAGCATCGGCACC-TTGGTGCTCGGATGTGCGGGAGCCTCGA
* *
43638001 GACACCATCGGCAACCTTGGTGCTTGGATGTGCGGGAGCCTCGA
1 G-CAGCATCGGC-ACCTTGGTGCTCGGATGTGCGGGAGCCTCGA
* *
43638045 GCACCATCGGCACCTTGGCGCCTAC-GATGTGCGGG
1 GCAGCATCGGCACCTTGGTG-CT-CGGATGTGCGGG
43638080 CTAAACGAAA
Statistics
Matches: 855, Mismatches: 138, Indels: 38
0.83 0.13 0.04
Matches are distributed among these distances:
41 26 0.03
42 385 0.45
43 437 0.51
44 7 0.01
ACGTcount: A:0.16, C:0.27, G:0.37, T:0.20
Consensus pattern (42 bp):
GCAGCATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGA
Found at i:43637137 original size:85 final size:85
Alignment explanation
Indices: 43637025--43638079 Score: 1316
Period size: 85 Copynumber: 12.4 Consensus size: 85
43637015 GGAGTACATG
* * *
43637025 GCAGCATCGGCACCTTGGTGGCTCGGATGTACGGGAGCCTCAAGCACCATCGGCACCTTGGTACT
1 GCAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCT
43637090 TGGATGTGCGGGAGCCTCGA
66 TGGATGTGCGGGAGCCTCGA
* * * * * * * ** *
43637110 CCACCATTGCCACCTTGGTGGTTCGGATATGCGGGAGACTCGAGCAGTATCGACACCTTGGTGCT
1 GCAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCT
* * *
43637175 TGGATGTACGGGTGTCTCGA
66 TGGATGTGCGGGAGCCTCGA
* * *
43637195 GCAGAACCGGCACCTTGGTGGCTCGGATGTG-GGGAAGCCTCGAGC-CGCATCAGCACCTTGGTG
1 GCAGCATCGGCACCTTGGTGGCTCGGATGTGCGGG-AGCCTCGAGCAC-CATCGGCACCTTGGTG
* ** *
43637258 CTGGGATGTGCGGTTGCCACGA
64 CTTGGATGTGCGGGAGCCTCGA
* * * * *
43637280 GCCGTATCGGCACCTTGGTGGCTCGGATGTGCGGGAGACTCGAGCAGCATCGGCATCTTGGTGCT
1 GCAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCT
*
43637345 TAGATGTGCGGGAGCCTCGA
66 TGGATGTGCGGGAGCCTCGA
* * *
43637365 GCAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCCCGAGGAGCATCGGCACCTTGGTGCT
1 GCAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCT
*
43637430 GGGATGTGCGGGAGCCTCGA
66 TGGATGTGCGGGAGCCTCGA
* * * *
43637450 GCAGCATCGGCACCTTGGCGGCTCGGATGTACGGGAGCCTCGAGCACCGTCGGCAGCTTGGTGCT
1 GCAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCT
* *
43637515 GGGATGTG-GGGAGACTCGA
66 TGGATGTGCGGGAGCCTCGA
*
43637534 GCAGCATCGGCACCTTGGTGGCTCAGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCT
1 GCAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCT
* *
43637599 TGGATGTGTGGGAGCCACGA
66 TGGATGTGCGGGAGCCTCGA
* * * * *
43637619 GCAGTATCGGCACTTTGGTGGCTCAGATGTGTGGGAGCCTGGAGCACCATCGGCACCTTGGTGCT
1 GCAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCT
43637684 TGGATGTGCGGGAGCCTCGA
66 TGGATGTGCGGGAGCCTCGA
* * * ** * *
43637704 GCAGAACCGGCACCTTGGT-GCTGGGATGTGATGGAGCCTCGAGCAGCATCGACACCTTGGTGCC
1 GCAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTG-C
*
43637768 TCGGATGTGCGGGAGCCTCGA
65 TTGGATGTGCGGGAGCCTCGA
* * * * *
43637789 GCAGCATTGGCACCTTGGT-GCTTGGATGTGGGGGAGCCTCGTGCACCATCGGCACATTGGTGGC
1 GCAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGT-GC
* * *
43637853 TCGAATGTGCAGGAGCCTCGA
65 TTGGATGTGCGGGAGCCTCGA
* * * *
43637874 GCAGCATCGGTACCTTGGT-GCTGGGATGTGCGGGAGCCTCGACCAGCATCGGCACCTTGGTGGC
1 GCAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGT-GC
*
43637938 TCGGATGTGCGGGAGCCTCGA
65 TTGGATGTGCGGGAGCCTCGA
* * *
43637959 CCAGCATCGGCACCGTGGGGGCTCGGATGTGCGGGAGCCTCG-GACACCATCGGCAACCTTGGTG
1 GCAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAG-CACCATCGGC-ACCTTGGTG
43638023 CTTGGATGTGCGGGAGCCTCGA
64 CTTGGATGTGCGGGAGCCTCGA
* * *
43638045 GCACCATCGGCACCTTGGCGCCTAC-GATGTGCGGG
1 GCAGCATCGGCACCTTGGTGGCT-CGGATGTGCGGG
43638080 CTAAACGAAA
Statistics
Matches: 837, Mismatches: 122, Indels: 21
0.85 0.12 0.02
Matches are distributed among these distances:
84 116 0.14
85 628 0.75
86 84 0.10
87 9 0.01
ACGTcount: A:0.16, C:0.27, G:0.37, T:0.20
Consensus pattern (85 bp):
GCAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCT
TGGATGTGCGGGAGCCTCGA
Found at i:43645504 original size:43 final size:43
Alignment explanation
Indices: 43645414--43645585 Score: 184
Period size: 43 Copynumber: 4.0 Consensus size: 43
43645404 TCCCCACAGC
* * * * * *
43645414 CGGCACCTTGGTGGCTGGGATGCGCGGGAGCCTCGCGTAGCAC
1 CGGCACCTTGGTGGCTCGGATGTGCCGGAGCCTCGAGCAGCAT
* *
43645457 CGGCACCTTGGTGGCTCGGATGTGCCGGAGCCCCGAGCAGTAT
1 CGGCACCTTGGTGGCTCGGATGTGCCGGAGCCTCGAGCAGCAT
* * * *
43645500 CGGCACCTAGGAGG-TCGGATGTGCCAGAGCCTCGAGCACCAT
1 CGGCACCTTGGTGGCTCGGATGTGCCGGAGCCTCGAGCAGCAT
* * * * *
43645542 CTGCACCTTGGTGCCTCGGATGTGCGGGAGACTCGAGCACCAT
1 CGGCACCTTGGTGGCTCGGATGTGCCGGAGCCTCGAGCAGCAT
43645585 C
1 C
43645586 CGCAACTTTG
Statistics
Matches: 107, Mismatches: 21, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
42 34 0.32
43 73 0.68
ACGTcount: A:0.16, C:0.31, G:0.36, T:0.17
Consensus pattern (43 bp):
CGGCACCTTGGTGGCTCGGATGTGCCGGAGCCTCGAGCAGCAT
Found at i:43645530 original size:42 final size:43
Alignment explanation
Indices: 43645457--43645566 Score: 123
Period size: 42 Copynumber: 2.6 Consensus size: 43
43645447 CGCGTAGCAC
* * *
43645457 CGGCACCTTGGTGGCTCGGATGTGCCGGAGCCCCGAGCAGTAT
1 CGGCACCTAGGAGGCTCGGATGTGCCAGAGCCCCGAGCAGTAT
* **
43645500 CGGCACCTAGGAGG-TCGGATGTGCCAGAGCCTCGAGCACCAT
1 CGGCACCTAGGAGGCTCGGATGTGCCAGAGCCCCGAGCAGTAT
* * * *
43645542 CTGCACCTTGGTGCCTCGGATGTGC
1 CGGCACCTAGGAGGCTCGGATGTGC
43645567 GGGAGACTCG
Statistics
Matches: 56, Mismatches: 10, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
42 34 0.61
43 22 0.39
ACGTcount: A:0.15, C:0.31, G:0.35, T:0.19
Consensus pattern (43 bp):
CGGCACCTAGGAGGCTCGGATGTGCCAGAGCCCCGAGCAGTAT
Found at i:43646163 original size:43 final size:42
Alignment explanation
Indices: 43646057--43646181 Score: 171
Period size: 43 Copynumber: 2.9 Consensus size: 42
43646047 AGAGCCTCAA
* *
43646057 GCACCATGGTGGCTCAGATATGCGGGAGCCTCGAGCACCATCG
1 GCACCTTGGT-GCTCAGATGTGCGGGAGCCTCGAGCACCATCG
* *
43646100 GCACCTTGGTACTCATATGTGCGGGAGCCTCG-GCCACCATCG
1 GCACCTTGGTGCTCAGATGTGCGGGAGCCTCGAG-CACCATCG
*
43646142 GCAACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCACCA
1 GC-ACCTTGGTGCTCAGATGTGCGGGAGCCTCGAGCACCA
43646182 AAGCTGAAGT
Statistics
Matches: 72, Mismatches: 7, Indels: 6
0.85 0.08 0.07
Matches are distributed among these distances:
41 1 0.01
42 29 0.40
43 41 0.57
44 1 0.01
ACGTcount: A:0.18, C:0.31, G:0.32, T:0.18
Consensus pattern (42 bp):
GCACCTTGGTGCTCAGATGTGCGGGAGCCTCGAGCACCATCG
Found at i:43646651 original size:85 final size:85
Alignment explanation
Indices: 43646530--43647585 Score: 1282
Period size: 85 Copynumber: 12.4 Consensus size: 85
43646520 GGAGCACATG
*
43646530 GCAGCATCGGCACCTTAGTGGCTCGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCT
1 GCAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCT
*
43646595 TGGATGTGAGGGAGCCTCGA
66 TGGATGTGCGGGAGCCTCGA
* * * * * * * *
43646615 CCACCATCGTCACCTTGGTGGCTCAGATATGCGGGAGACTCGAGTAGCATCGGCACCTTGGTGCT
1 GCAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCT
* * *
43646680 TGGATGTACGGGAGTCTCCA
66 TGGATGTGCGGGAGCCTCGA
* * * *
43646700 GCAGAACCGGCACCTTGGTGGCTCAGATGTGCGGGAGCCTCGAGC-CGTATCGGCACCTTGGTGC
1 GCAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCAC-CATCGGCACCTTGGTGC
* *
43646764 TGGGATGTGCGGGAGCCCCGA
65 TTGGATGTGCGGGAGCCTCGA
* * * * * * * *
43646785 GCCGCATCGGTACCTTGATGGCTCAGATGTGCGGGAGACTCGAGCAGCATCGGCATCTTGGTCCT
1 GCAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCT
43646850 TGGATGTGCGGGAGCCTCGA
66 TGGATGTGCGGGAGCCTCGA
* * * ** **
43646870 GCAGCATCGGTACCTTGGTGGCTCGGATGTGCGGGAGACC-CGAGGAGCATCAACACCTTACTGC
1 GCAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAG-CCTCGAGCACCATCGGCACCTTGGTGC
*
43646934 TTGGATGTGCGGGAGCCTTGA
65 TTGGATGTGCGGGAGCCTCGA
* * *
43646955 GCCA-CATCGGTACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCACCGTCGGCAGCTTGGTGC
1 G-CAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGC
* *
43647019 TGGGATGTGCGGGAGACTCGA
65 TTGGATGTGCGGGAGCCTCGA
*
43647040 GCAGCATCGGCACCTTGGTGGCTTGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCT
1 GCAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCT
* *
43647105 TGGATGTGTGGCAGCCTCGA
66 TGGATGTGCGGGAGCCTCGA
*
43647125 GCACCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCT
1 GCAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCT
* * *
43647190 TAGATGTACGTGAGCCTCGA
66 TGGATGTGCGGGAGCCTCGA
* * * * * * *
43647210 GCAGAACCGGCACCTTGGT-GCTGGGATATGCGGGAGCCTCGAGTAGCATCAGCACCTTGGTGGC
1 GCAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGT-GC
*
43647274 TCGGATGTGCGGGAGCCTCGA
65 TTGGATGTGCGGGAGCCTCGA
* * * * *
43647295 GCAGCATCGGCACCTTGGT-GCTTGGATGTGGGGGAGCCTCGTGCATCATCGGCACATTGGTGGC
1 GCAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGT-GC
*
43647359 TCGGATGTGCGGGAGCCTCGA
65 TTGGATGTGCGGGAGCCTCGA
* * **
43647380 GCAGCATCGGCACCTTGGT-GCTGGGATGTGCGGGAGCCTCGACCAGTATCGGCACCTTGGTGGC
1 GCAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGT-GC
** *
43647444 TCAGATGTGCGGAAGCCTCGA
65 TTGGATGTGCGGGAGCCTCGA
* * * * *
43647465 CCAGCATCGGCACCTTGGGGGCTCGAATGTACGGGAGCCTTG-GACACCATCGGCAACCTTGGTG
1 GCAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAG-CACCATCGGC-ACCTTGGTG
*
43647529 CTTGGATGTGCGAGAGCCTCGA
64 CTTGGATGTGCGGGAGCCTCGA
* * *
43647551 GCACCACCGGCACCTTGGTGCCTAC-GATGTGCGGG
1 GCAGCATCGGCACCTTGGTGGCT-CGGATGTGCGGG
43647586 CTAAAGGAAA
Statistics
Matches: 831, Mismatches: 129, Indels: 21
0.85 0.13 0.02
Matches are distributed among these distances:
84 41 0.05
85 707 0.85
86 74 0.09
87 9 0.01
ACGTcount: A:0.16, C:0.27, G:0.36, T:0.21
Consensus pattern (85 bp):
GCAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCT
TGGATGTGCGGGAGCCTCGA
Found at i:43647546 original size:43 final size:42
Alignment explanation
Indices: 43646530--43647585 Score: 1193
Period size: 43 Copynumber: 24.8 Consensus size: 42
43646520 GGAGCACATG
*
43646530 GCAGCATCGGCACCTTAGTGGCTCGGATGTGCGGGAGCCTCGA
1 GCAGCATCGGCACCTTGGT-GCTCGGATGTGCGGGAGCCTCGA
* * *
43646573 GCACCATCGGCACCTTGGTGCTTGGATGTGAGGGAGCCTCGA
1 GCAGCATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGA
* * * * * *
43646615 CCACCATCGTCACCTTGGTGGCTCAGATATGCGGGAGACTCGA
1 GCAGCATCGGCACCTTGGT-GCTCGGATGTGCGGGAGCCTCGA
* * * * *
43646658 GTAGCATCGGCACCTTGGTGCTTGGATGTACGGGAGTCTCCA
1 GCAGCATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGA
* * *
43646700 GCAGAACCGGCACCTTGGTGGCTCAGATGTGCGGGAGCCTCGA
1 GCAGCATCGGCACCTTGGT-GCTCGGATGTGCGGGAGCCTCGA
* * * *
43646743 GCCGTATCGGCACCTTGGTGCTGGGATGTGCGGGAGCCCCGA
1 GCAGCATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGA
* * * * *
43646785 GCCGCATCGGTACCTTGATGGCTCAGATGTGCGGGAGACTCGA
1 GCAGCATCGGCACCTTGGT-GCTCGGATGTGCGGGAGCCTCGA
* * *
43646828 GCAGCATCGGCATCTTGGTCCTTGGATGTGCGGGAGCCTCGA
1 GCAGCATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGA
*
43646870 GCAGCATCGGTACCTTGGTGGCTCGGATGTGCGGGAGACC-CGA
1 GCAGCATCGGCACCTTGGT-GCTCGGATGTGCGGGAG-CCTCGA
* ** ** * *
43646913 GGAGCATCAACACCTTACTGCTTGGATGTGCGGGAGCCTTGA
1 GCAGCATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGA
*
43646955 GCCA-CATCGGTACCTTGGTGGCTCGGATGTGCGGGAGCCTCGA
1 G-CAGCATCGGCACCTTGGT-GCTCGGATGTGCGGGAGCCTCGA
* * * * *
43646998 GCACCGTCGGCAGCTTGGTGCTGGGATGTGCGGGAGACTCGA
1 GCAGCATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGA
*
43647040 GCAGCATCGGCACCTTGGTGGCTTGGATGTGCGGGAGCCTCGA
1 GCAGCATCGGCACCTTGGT-GCTCGGATGTGCGGGAGCCTCGA
* * * *
43647083 GCACCATCGGCACCTTGGTGCTTGGATGTGTGGCAGCCTCGA
1 GCAGCATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGA
*
43647125 GCACCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGA
1 GCAGCATCGGCACCTTGGT-GCTCGGATGTGCGGGAGCCTCGA
* ** * *
43647168 GCACCATCGGCACCTTGGTGCTTAGATGTACGTGAGCCTCGA
1 GCAGCATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGA
* * * *
43647210 GCAGAACCGGCACCTTGGTGCTGGGATATGCGGGAGCCTCGA
1 GCAGCATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGA
* *
43647252 GTAGCATCAGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGA
1 GCAGCATCGGCACCTTGGT-GCTCGGATGTGCGGGAGCCTCGA
* * *
43647295 GCAGCATCGGCACCTTGGTGCTTGGATGTGGGGGAGCCTCGT
1 GCAGCATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGA
* *
43647337 GCATCATCGGCACATTGGTGGCTCGGATGTGCGGGAGCCTCGA
1 GCAGCATCGGCACCTTGGT-GCTCGGATGTGCGGGAGCCTCGA
*
43647380 GCAGCATCGGCACCTTGGTGCTGGGATGTGCGGGAGCCTCGA
1 GCAGCATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGA
* * * *
43647422 CCAGTATCGGCACCTTGGTGGCTCAGATGTGCGGAAGCCTCGA
1 GCAGCATCGGCACCTTGGT-GCTCGGATGTGCGGGAGCCTCGA
* * * * *
43647465 CCAGCATCGGCACCTTGGGGGCTCGAATGTACGGGAGCCTTG-
1 GCAGCATCGGCACCTT-GGTGCTCGGATGTGCGGGAGCCTCGA
* * *
43647507 GACACCATCGGCAACCTTGGTGCTTGGATGTGCGAGAGCCTCGA
1 G-CAGCATCGGC-ACCTTGGTGCTCGGATGTGCGGGAGCCTCGA
* *
43647551 GCACCACCGGCACCTTGGTGCCTAC-GATGTGCGGG
1 GCAGCATCGGCACCTTGGTG-CT-CGGATGTGCGGG
43647586 CTAAAGGAAA
Statistics
Matches: 853, Mismatches: 140, Indels: 40
0.83 0.14 0.04
Matches are distributed among these distances:
41 2 0.00
42 404 0.47
43 437 0.51
44 10 0.01
ACGTcount: A:0.16, C:0.27, G:0.36, T:0.21
Consensus pattern (42 bp):
GCAGCATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGA
Found at i:43654201 original size:42 final size:43
Alignment explanation
Indices: 43654101--43654210 Score: 141
Period size: 42 Copynumber: 2.6 Consensus size: 43
43654091 NNNNNNNNNN
* * *
43654101 GGATGTGCAGGAGCCTCGGCCACCATCGGCAACCTTGGTGCTC
1 GGATGTGCAGGAGCCTCGACCACCATCGACAACCTTGGTGCTA
* * *
43654144 GGATGTGCGGGAGCCTCGACCACTATCGAC-ACGTTGGTGCTA
1 GGATGTGCAGGAGCCTCGACCACCATCGACAACCTTGGTGCTA
* *
43654186 GGATGTGCAGAAGCCTCGAGCACCA
1 GGATGTGCAGGAGCCTCGACCACCA
43654211 AAGCTGAAGT
Statistics
Matches: 57, Mismatches: 10, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
42 31 0.54
43 26 0.46
ACGTcount: A:0.20, C:0.29, G:0.33, T:0.18
Consensus pattern (43 bp):
GGATGTGCAGGAGCCTCGACCACCATCGACAACCTTGGTGCTA
Found at i:43668410 original size:43 final size:43
Alignment explanation
Indices: 43668362--43668481 Score: 143
Period size: 43 Copynumber: 2.8 Consensus size: 43
43668352 CCACAGCCGG
* *
43668362 CACCTTGGTGGCTCGGATGCGCGGGAGCCTCGCGCAGCAACGA
1 CACCTTGGTGGCTCGGATGCGCCGGAGCCTCGAGCAGCAACGA
* * * **
43668405 CACCTTGGTGGCACGGATGCGCCGGAGCCCCGAGTAGCATTGA
1 CACCTTGGTGGCTCGGATGCGCCGGAGCCTCGAGCAGCAACGA
* * *
43668448 CACCTAGGAGG-TCGGATGTGCCGGAGCCTCGAGC
1 CACCTTGGTGGCTCGGATGCGCCGGAGCCTCGAGC
43668482 GTTGGGCTAA
Statistics
Matches: 64, Mismatches: 13, Indels: 1
0.82 0.17 0.01
Matches are distributed among these distances:
42 19 0.30
43 45 0.70
ACGTcount: A:0.17, C:0.31, G:0.37, T:0.15
Consensus pattern (43 bp):
CACCTTGGTGGCTCGGATGCGCCGGAGCCTCGAGCAGCAACGA
Found at i:43669008 original size:43 final size:42
Alignment explanation
Indices: 43668916--43669082 Score: 210
Period size: 42 Copynumber: 3.9 Consensus size: 42
43668906 AGAGCCTCAA
* * * *
43668916 GCACCTTGGTGGCTCGGATATGTGGGAGCCTCGAGTAGCATCG
1 GCACCTTGGT-GCTCGGATGTGCGGGAGCCTCGAGCACCATCG
*
43668959 GCACCTTGGTGCTCGGATGTACGGGAGCCTC-AGCCACCATCG
1 GCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAG-CACCATCG
* *
43669001 GCAACCTTGCTGCTCGGATGTGCGGGAGCCTCGACCACCATCG
1 GC-ACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCACCATCG
* * *
43669044 ACACCTTGGTGCTAGGATGTGCGGAAGCCTCGAGCACCA
1 GCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCACCA
43669083 AAGCTGAAGT
Statistics
Matches: 108, Mismatches: 13, Indels: 7
0.84 0.10 0.05
Matches are distributed among these distances:
41 2 0.02
42 59 0.55
43 46 0.43
44 1 0.01
ACGTcount: A:0.18, C:0.30, G:0.32, T:0.20
Consensus pattern (42 bp):
GCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCACCATCG
Found at i:43669073 original size:85 final size:86
Alignment explanation
Indices: 43668918--43669082 Score: 217
Period size: 85 Copynumber: 1.9 Consensus size: 86
43668908 AGCCTCAAGC
* * ** * * *
43668918 ACCTTGGTGGCTCGGATATGTGGGAGCCTCGAGTAGCATCGGCACCTTGGTGCTCGGATGTACGG
1 ACCTTGCTGGCTCGGATATGCGGGAGCCTCGACCACCATCGACACCTTGGTGCTAGGATGTACGG
*
43668983 GAGCCTC-AGCCACCATCGGCA
66 AAGCCTCGAG-CACCATCGGCA
* *
43669004 ACCTTGCT-GCTCGGATGTGCGGGAGCCTCGACCACCATCGACACCTTGGTGCTAGGATGTGCGG
1 ACCTTGCTGGCTCGGATATGCGGGAGCCTCGACCACCATCGACACCTTGGTGCTAGGATGTACGG
43669068 AAGCCTCGAGCACCA
66 AAGCCTCGAGCACCA
43669083 AAGCTGAAGT
Statistics
Matches: 68, Mismatches: 10, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
85 59 0.87
86 9 0.13
ACGTcount: A:0.18, C:0.30, G:0.32, T:0.20
Consensus pattern (86 bp):
ACCTTGCTGGCTCGGATATGCGGGAGCCTCGACCACCATCGACACCTTGGTGCTAGGATGTACGG
AAGCCTCGAGCACCATCGGCA
Found at i:43669318 original size:24 final size:24
Alignment explanation
Indices: 43669291--43669347 Score: 87
Period size: 24 Copynumber: 2.4 Consensus size: 24
43669281 GCCGGTTAGG
43669291 TTCCCGGTAGTGCTCCGGCGATCC
1 TTCCCGGTAGTGCTCCGGCGATCC
**
43669315 TTCCCGGCGGTGCTCCGGCGATCC
1 TTCCCGGTAGTGCTCCGGCGATCC
*
43669339 ATCCCGGTA
1 TTCCCGGTA
43669348 TATAGAAAAC
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.09, C:0.39, G:0.30, T:0.23
Consensus pattern (24 bp):
TTCCCGGTAGTGCTCCGGCGATCC
Found at i:43669499 original size:43 final size:43
Alignment explanation
Indices: 43669446--43670069 Score: 654
Period size: 43 Copynumber: 14.6 Consensus size: 43
43669436 ACATGGCAGT
*
43669446 ATCGGTACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCACC
1 ATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCACC
* * * *
43669489 TTCGGCACCTTGGT-GCTTGGATGTCCGGGAGCCTCGACCACC
1 ATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCACC
* * * * *
43669531 ATCGTCACCTTGGTGGCTCGCATATGCGGGAGACTCGAGCAGC
1 ATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCACC
* * ** * **
43669574 ATCGGCACCTTCGT-GCTTGGATGTATGGGAGTCTCGAGCAGA
1 ATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCACC
* * * *
43669616 ACCGGTACCTTGGTGGCTCAGATGTGCGGGAGCCTCGAGCAGC
1 ATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCACC
* * *
43669659 ATCAGCACCTTGGTGGTTCGGATGTGCGGGAGCCTCGAAC-CGC
1 ATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCAC-C
* * *
43669702 ATCGGCACCTTGGT-GCTGGGATGTGCGGGAGCCCCGAGC-CGT
1 ATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCAC-C
* * * * * *
43669744 ATCGGCACCTCGGTGTCTTGGATGTGCGGGAGACTTGAGCAGC
1 ATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCACC
* * * *
43669787 ATCGGCATCTTGGT-GCTTGGATGTGGGGGAGCCTCGTGCACC
1 ATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCACC
* * *
43669829 ATCAGCACATTGGTGGCTCGGATGTGCGGGAGCCTCGAGCAGC
1 ATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCACC
* * *
43669872 ATCGGCACCTTGGT-GCTGGGATGTGCGGGAGCCTCGACCAGC
1 ATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCACC
* * * * *
43669914 ATCGGCACCTTTGTAGCTAGGATGTGCGGGAGCCTCGACCAGC
1 ATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCACC
* *
43669957 ATCGGCACCTTGGGGGCTCGGATGTGTGGGAGCCTCG-GACACC
1 ATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAG-CACC
* *
43670000 ATCGGCAACCTTGGT-GCTTGGATGTGTGGGAGCCTCGAGCACC
1 ATCGGC-ACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCACC
* * *
43670043 ATGGGCACCTTGGTGCCTAGGATGTGC
1 ATCGGCACCTTGGTGGCTCGGATGTGC
43670070 AGGCTAAAGG
Statistics
Matches: 483, Mismatches: 87, Indels: 22
0.82 0.15 0.04
Matches are distributed among these distances:
42 185 0.38
43 290 0.60
44 8 0.02
ACGTcount: A:0.16, C:0.27, G:0.36, T:0.22
Consensus pattern (43 bp):
ATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCACC
Found at i:43669559 original size:85 final size:85
Alignment explanation
Indices: 43669441--43670069 Score: 710
Period size: 85 Copynumber: 7.4 Consensus size: 85
43669431 GGAGTACATG
* * *
43669441 GCAGTATCGGTACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCACCTTCGGCACCTTGGTGCT
1 GCAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCT
*
43669506 TGGATGTCCGGGAGCCTCGA
66 TGGATGTGCGGGAGCCTCGA
* * * * * * * *
43669526 CCACCATCGTCACCTTGGTGGCTCGCATATGCGGGAGACTCGAGCAGCATCGGCACCTTCGTGCT
1 GCAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCT
** *
43669591 TGGATGTATGGGAGTCTCGA
66 TGGATGTGCGGGAGCCTCGA
* * * * * * *
43669611 GCAGAACCGGTACCTTGGTGGCTCAGATGTGCGGGAGCCTCGAGCAGCATCAGCACCTTGGTGGT
1 GCAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCT
43669676 TCGGATGTGCGGGAGCCTCGA
66 T-GGATGTGCGGGAGCCTCGA
* * * * * *
43669697 ACCGCATCGGCACCTTGGT-GCTGGGATGTGCGGGAGCCCCGAGC-CGTATCGGCACCTCGGTGT
1 GCAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCAC-CATCGGCACCTTGGTG-
* *
43669760 CTTGGATGTGCGGGAGACTTGA
64 CTTGGATGTGCGGGAGCCTCGA
* * * * * *
43669782 GCAGCATCGGCATCTTGGT-GCTTGGATGTGGGGGAGCCTCGTGCACCATCAGCACATTGGTGGC
1 GCAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGT-GC
*
43669846 TCGGATGTGCGGGAGCCTCGA
65 TTGGATGTGCGGGAGCCTCGA
* * * *
43669867 GCAGCATCGGCACCTTGGT-GCTGGGATGTGCGGGAGCCTCGACCAGCATCGGCACCTTTGTAGC
1 GCAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGT-GC
*
43669931 TAGGATGTGCGGGAGCCTCGA
65 TTGGATGTGCGGGAGCCTCGA
* * *
43669952 CCAGCATCGGCACCTTGGGGGCTCGGATGTGTGGGAGCCTCG-GACACCATCGGCAACCTTGGTG
1 GCAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAG-CACCATCGGC-ACCTTGGTG
*
43670016 CTTGGATGTGTGGGAGCCTCGA
64 CTTGGATGTGCGGGAGCCTCGA
* * * *
43670038 GCACCATGGGCACCTTGGTGCCTAGGATGTGC
1 GCAGCATCGGCACCTTGGTGGCTCGGATGTGC
43670070 AGGCTAAAGG
Statistics
Matches: 450, Mismatches: 86, Indels: 15
0.82 0.16 0.03
Matches are distributed among these distances:
85 334 0.74
86 109 0.24
87 7 0.02
ACGTcount: A:0.16, C:0.27, G:0.36, T:0.22
Consensus pattern (85 bp):
GCAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCT
TGGATGTGCGGGAGCCTCGA
Found at i:43669646 original size:128 final size:127
Alignment explanation
Indices: 43669441--43670069 Score: 704
Period size: 128 Copynumber: 4.9 Consensus size: 127
43669431 GGAGTACATG
* * * *
43669441 GCAGTATCGGTACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCACCTTCGGCACCTTGGTGCT
1 GCAGCATCGGCACCTTGGT-GCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGCT
* * * * * * *
43669506 TGGATGTCCGGGAGCCTCGACCACCATCGTCACCTTGGTGGCTCGCATATGCGGGAGACTCGA
65 TGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGA
* * ** * * * *
43669569 GCAGCATCGGCACCTTCGTGCTTGGATGTATGGGAGTCTCGAGCAGAACCGGTACCTTGGTGGCT
1 GCAGCATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGT-GCT
** * *
43669634 CAGATGTGCGGGAGCCTCGAGCAGCATCAGCACCTTGGTGGTTCGGATGTGCGGGAGCCTCGA
65 TGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGA
* * * * * * *
43669697 ACCGCATCGGCACCTTGGTGCTGGGATGTGCGGGAGCCCCGAGCCGTATCGGCACCTCGGTGTCT
1 GCAGCATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTG-CT
* * * * * *
43669762 TGGATGTGCGGGAGACTTGAGCAGCATCGGCATCTTGGT-GCTTGGATGTGGGGGAGCCTCGT
65 TGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGA
* * *
43669824 GCACCATCAGCACATTGGTGGCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGCT
1 GCAGCATCGGCACCTTGGT-GCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGCT
* * * * *
43669889 GGGATGTGCGGGAGCCTCGACCAGCATCGGCACCTTTGTAGCTAGGATGTGCGGGAGCCTCGA
65 TGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGA
* * * *
43669952 CCAGCATCGGCACCTTGGGGGCTCGGATGTGTGGGAGCCTCG-GACACCATCGGCAACCTTGGTG
1 GCAGCATCGGCACCTT-GGTGCTCGGATGTGCGGGAGCCTCGAG-CAGCATCGGC-ACCTTGGTG
* * * * *
43670016 CTTGGATGTGTGGGAGCCTCGAGCACCATGGGCACCTTGGTGCCTAGGATGTGC
63 CTTGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGGCTCGGATGTGC
43670070 AGGCTAAAGG
Statistics
Matches: 414, Mismatches: 80, Indels: 13
0.82 0.16 0.03
Matches are distributed among these distances:
127 103 0.25
128 254 0.61
129 57 0.14
ACGTcount: A:0.16, C:0.27, G:0.36, T:0.22
Consensus pattern (127 bp):
GCAGCATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGCTT
GGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGA
Found at i:43669776 original size:213 final size:213
Alignment explanation
Indices: 43669452--43670041 Score: 767
Period size: 213 Copynumber: 2.8 Consensus size: 213
43669442 CAGTATCGGT
* * * *
43669452 ACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCAC-CTTCGGCACCTTGGTGCTTGGATGTCCG
1 ACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAAC-CGCATCGGCACCTTGGTGCTAGGATGTGCG
* * * *
43669516 GGAGCCTCGACCACCATCGTCACCTTGGTGGCTCGCATATGCGGGAGACTCGAGCAGCATCGGCA
65 GGAGCCTCGACCAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGACTCGAGCAGCATCGGCA
* * * * * * *
43669581 CCTTCGTGCTTGGATGTATGGGAGTCTCGAGCAGAACCGGTACCTTGGTGGCTCAGATGTGCGGG
130 CCTTGGTGCTTGGATGTGTGGGAGCCTCGAGCACAACCAGCACATTGGTGGCTCAGATGTGCGGG
43669646 AGCCTCGAGCAGCATCAGC
195 AGCCTCGAGCAGCATCAGC
* *
43669665 ACCTTGGTGGTTCGGATGTGCGGGAGCCTCGAACCGCATCGGCACCTTGGTGCTGGGATGTGCGG
1 ACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAACCGCATCGGCACCTTGGTGCTAGGATGTGCGG
* * * * * *
43669730 GAGCCCCGAGCC-GTATCGGCACCTCGGTGTCTTGGATGTGCGGGAGACTTGAGCAGCATCGGCA
66 GAGCCTCGA-CCAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGACTCGAGCAGCATCGGCA
* * * * * *
43669794 TCTTGGTGCTTGGATGTGGGGGAGCCTCGTGCACCATCAGCACATTGGTGGCTCGGATGTGCGGG
130 CCTTGGTGCTTGGATGTGTGGGAGCCTCGAGCACAACCAGCACATTGGTGGCTCAGATGTGCGGG
*
43669859 AGCCTCGAGCAGCATCGGC
195 AGCCTCGAGCAGCATCAGC
* *
43669878 ACCTTGGT-GCTGGGATGTGCGGGAGCCTCG-ACCAGCATCGGCACCTTTGTAGCTAGGATGTGC
1 ACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAACC-GCATCGGCACCTTGGT-GCTAGGATGTGC
* * * *
43669941 GGGAGCCTCGACCAGCATCGGCACCTTGGGGGCTCGGATGTGTGGGAGCCTCG-GACACCATCGG
64 GGGAGCCTCGACCAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGACTCGAG-CAGCATCGG
43670005 CAACCTTGGTGCTTGGATGTGTGGGAGCCTCGAGCAC
128 C-ACCTTGGTGCTTGGATGTGTGGGAGCCTCGAGCAC
43670042 CATGGGCACC
Statistics
Matches: 324, Mismatches: 46, Indels: 13
0.85 0.12 0.03
Matches are distributed among these distances:
211 3 0.01
212 39 0.12
213 248 0.77
214 34 0.10
ACGTcount: A:0.16, C:0.27, G:0.36, T:0.21
Consensus pattern (213 bp):
ACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAACCGCATCGGCACCTTGGTGCTAGGATGTGCGG
GAGCCTCGACCAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGACTCGAGCAGCATCGGCAC
CTTGGTGCTTGGATGTGTGGGAGCCTCGAGCACAACCAGCACATTGGTGGCTCAGATGTGCGGGA
GCCTCGAGCAGCATCAGC
Found at i:43679841 original size:43 final size:43
Alignment explanation
Indices: 43679793--43679960 Score: 187
Period size: 43 Copynumber: 3.9 Consensus size: 43
43679783 CTCCCCACAG
*
43679793 CCGGCACCTTGGTGGCTCGGATGCGCGGGAGCCTCGCGCAGCA
1 CCGGCACCTTGGTGGCTCGGATGCGCGGGAGCCTCGAGCAGCA
* * *
43679836 CCGGCACCTTGGTTGCTCGGATGCGCTGGAGCCCCGAGCAGCA
1 CCGGCACCTTGGTGGCTCGGATGCGCGGGAGCCTCGAGCAGCA
* * * * * ** *
43679879 TCGGCACCTAGGAGG-TCGGATGTGCCGGAGCCTCGAATACCA
1 CCGGCACCTTGGTGGCTCGGATGCGCGGGAGCCTCGAGCAGCA
* *
43679921 TCC-GCACCTTGGTGCCTCGGATGTGCGGGAGCCTCGAGCA
1 -CCGGCACCTTGGTGGCTCGGATGCGCGGGAGCCTCGAGCA
43679961 CCATCTGCAA
Statistics
Matches: 102, Mismatches: 21, Indels: 4
0.80 0.17 0.03
Matches are distributed among these distances:
42 30 0.29
43 72 0.71
ACGTcount: A:0.15, C:0.33, G:0.36, T:0.17
Consensus pattern (43 bp):
CCGGCACCTTGGTGGCTCGGATGCGCGGGAGCCTCGAGCAGCA
Found at i:43680536 original size:42 final size:43
Alignment explanation
Indices: 43680451--43680555 Score: 131
Period size: 42 Copynumber: 2.5 Consensus size: 43
43680441 AGCTCAGATA
* * *
43680451 TGCGGGAGCCTCGGCCACCATCGGCAACCTTAGTGCTCGGATG
1 TGCGGGAGCCTCGACCACCATCGACAACCTTAGTGCTAGGATG
*
43680494 TGCGGGAGCCTCGACCACCATCGAC-ACCTTGGTGCTAGGATG
1 TGCGGGAGCCTCGACCACCATCGACAACCTTAGTGCTAGGATG
* * * *
43680536 TGTGGAAGCCTTGAGCACCA
1 TGCGGGAGCCTCGACCACCA
43680556 AATCTGAAGT
Statistics
Matches: 54, Mismatches: 8, Indels: 1
0.86 0.13 0.02
Matches are distributed among these distances:
42 31 0.57
43 23 0.43
ACGTcount: A:0.19, C:0.30, G:0.31, T:0.19
Consensus pattern (43 bp):
TGCGGGAGCCTCGACCACCATCGACAACCTTAGTGCTAGGATG
Found at i:43686309 original size:42 final size:41
Alignment explanation
Indices: 43686162--43686322 Score: 180
Period size: 42 Copynumber: 3.8 Consensus size: 41
43686152 AGAGCCTCAA
* * *
43686162 GCACCTTGGTGGCTCA-GATATGCGGGAGCCTCGAGCAGCATC
1 GCACCTTGGT-GCT-AGGATGTGCGGGAGCCTCGACCACCATC
* * * *
43686204 GGCACCTTGGTGCTCGGATGTGTGGCAGCCTCGGCCACCATC
1 -GCACCTTGGTGCTAGGATGTGCGGGAGCCTCGACCACCATC
*
43686246 TGCAACCTTGGTGCTCGGATGTGCGGGAGCCTCGACCACCATC
1 -GC-ACCTTGGTGCTAGGATGTGCGGGAGCCTCGACCACCATC
*
43686289 GACACCTTGGTGCTAGGATGTGCGGAAGCCTCGA
1 G-CACCTTGGTGCTAGGATGTGCGGGAGCCTCGA
43686323 GCACAAAAGC
Statistics
Matches: 102, Mismatches: 13, Indels: 7
0.84 0.11 0.06
Matches are distributed among these distances:
42 55 0.54
43 47 0.46
ACGTcount: A:0.17, C:0.30, G:0.33, T:0.20
Consensus pattern (41 bp):
GCACCTTGGTGCTAGGATGTGCGGGAGCCTCGACCACCATC
Found at i:43686982 original size:24 final size:24
Alignment explanation
Indices: 43686955--43687031 Score: 111
Period size: 24 Copynumber: 3.2 Consensus size: 24
43686945 CCGGTTAGGT
43686955 TCCCGGCGGTGCTCCGGCGATCCA
1 TCCCGGCGGTGCTCCGGCGATCCA
*
43686979 TCCCGGCGGTGCTCTGGCGATCCA
1 TCCCGGCGGTGCTCCGGCGATCCA
* * *
43687003 T-CCTGCGGCGCTCCGGTGATCCA
1 TCCCGGCGGTGCTCCGGCGATCCA
43687026 TCCCGG
1 TCCCGG
43687032 TATATAGAAA
Statistics
Matches: 46, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
23 19 0.41
24 27 0.59
ACGTcount: A:0.08, C:0.40, G:0.32, T:0.19
Consensus pattern (24 bp):
TCCCGGCGGTGCTCCGGCGATCCA
Found at i:43687239 original size:85 final size:84
Alignment explanation
Indices: 43687131--43688139 Score: 1230
Period size: 85 Copynumber: 11.9 Consensus size: 84
43687121 CACATGGCAG
* *
43687131 CATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTAGA
1 CATCGGCACCTTGGT-GCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGCTTGGA
* *
43687196 TGTGCAGGAGCCTCGACCAC
65 TGTGCGGGAGCCTCGAGCAC
* * * * *
43687216 CATCGTCACCTTGATGCCACGGATATGCGGGAGACTCGAGCAGCATCGGCACCTTGGTGCTTGGA
1 CATCGGCACCTTGGTG-CTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGCTTGGA
* * *
43687281 TGTACGGGAGGCTCGAGCAG
65 TGTGCGGGAGCCTCGAGCAC
* * * * *
43687301 AACCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCCGCATCGGTACCTTGGTGCTGGGA
1 CATCGGCACCTTGGT-GCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGCTTGGA
*
43687366 TGTGCGGGAGCCCCGAGC-C
65 TGTGCGGGAGCCTCGAGCAC
* * * * *
43687385 GTATCGGCACCTTGGTGGCTTGGATGTGCGGGAGACTCGAGCAGCATCGGCATCTTAGTGCTTGG
1 -CATCGGCACCTTGGT-GCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGCTTGG
* * *
43687450 ATGTGGGGGAGCCTCGAGGAG
64 ATGTGCGGGAGCCTCGAGCAC
* * * ** * **
43687471 CATCGGCACCTTGCTGTTGGGATGTGCGGGAGCCTCGAGCCCCATCGGCACCTTAGTGGCTCAGA
1 CATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGT-GCTTGGA
43687536 TGTGCGGGAGCCTCGAGCAC
65 TGTGCGGGAGCCTCGAGCAC
** * * * * *
43687556 CATCGGCAGATTGGTGCTGGGATGTGTGGGAGACTCGAGCAGCATCGGTACCTTGGTGGCTCGGA
1 CATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGT-GCTTGGA
43687621 TGTGCGGGAGCCTCGAGCAC
65 TGTGCGGGAGCCTCGAGCAC
* * * *
43687641 CATCGGCACCTTGGTGCTTGGATGTGTGGGAGCCTCGAGCACCATCGGCACCTTGGTGGCTCGGA
1 CATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGT-GCTTGGA
* * *
43687706 TGTACGAGAGCCTGGAGCAC
65 TGTGCGGGAGCCTCGAGCAC
* * *
43687726 CATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGAGCAGAATCGGCACCTTGGTGCTGGGAT
1 CATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGCTTGGAT
* *
43687791 GTGCGGGAGCCTCGAACAG
66 GTGCGGGAGCCTCGAGCAC
*
43687810 CATCGGCACCTTGGTGCCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGTACCTTGGTGCTTGGA
1 CATCGGCACCTTGGTG-CTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGCTTGGA
* *
43687875 TGTGGGGGAGCCTCGTGCAC
65 TGTGCGGGAGCCTCGAGCAC
* * *
43687895 CATCGGTACCTTGGTGGCTCGGATGTGTGGGAGCCTCGAGCAGCATCGGCACCTTGGTGCTGGGA
1 CATCGGCACCTTGGT-GCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGCTTGGA
* *
43687960 TGTGCGGGAGCCTCGACCAG
65 TGTGCGGGAGCCTCGAGCAC
** * * *
43687980 CATCGGCACCTTGGTGGCTCGGATGTGTAGGAGCCTCGACCAGCATCGGCACCTTGGGGGCTCGG
1 CATCGGCACCTTGGT-GCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTT-GGTGCTTGG
43688045 ATGTGCGGGAGCCTCG-GACAC
64 ATGTGCGGGAGCCTCGAG-CAC
* * * * *
43688066 CATCGGCAACCTTGGTGGTTGGATGTGTGGGAGCCTCGAGCACCATCGGCACCTTGGTGCCTAGG
1 CATCGGC-ACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTG-CTTGG
43688131 ATGTGCGGG
64 ATGTGCGGG
43688140 CTAAAGGAAA
Statistics
Matches: 802, Mismatches: 111, Indels: 21
0.86 0.12 0.02
Matches are distributed among these distances:
84 74 0.09
85 639 0.80
86 81 0.10
87 8 0.01
ACGTcount: A:0.16, C:0.26, G:0.37, T:0.21
Consensus pattern (84 bp):
CATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGCTTGGAT
GTGCGGGAGCCTCGAGCAC
Found at i:43687690 original size:297 final size:296
Alignment explanation
Indices: 43687127--43688139 Score: 1350
Period size: 297 Copynumber: 3.4 Consensus size: 296
43687117 GGAGCACATG
43687127 GCAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCT
1 GCAGCATCGGCACCTTGGT-GCTCGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTG-T
* * * * * * * * *
43687192 TAGATGTGCAGGAGCCTCGACCACCATCGTCACCTTGATGCCACGGATATGCGGGAGACTCGAGC
64 TGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCCTCAGATGTGCGGGAGCCTCGAGC
* * * * *
43687257 AGCATCGGCACCTTGGTGCTTGGATGTACGGGAGGCTCGAGCAGAACCGGCACCTTGGTGGCTCG
129 AGCATCGGCACCTTGGTGCTTGGATGTGCGGGAGACTCGAGCAGCATCGGTACCTTGGTGGCTCG
* *
43687322 GATGTGCGGGAGCCTCGAGC-CGCATCGGTACCTTGGTGCTGGGATGTGCGGGAGCCCCGAGC-C
194 GATGTGCGGGAGCCTCGAGCAC-CATCGGCACCTTGGTGCTGGGATGTGCGGGAGCCTCGAGCAC
* * *
43687385 GTATCGGCACCTTGGTGGCTTGGATGTGCGGGAGACTCGA
258 -CATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGA
* * * * * * *
43687425 GCAGCATCGGCATCTTAGTGCTTGGATGTGGGGGAGCCTCGAGGAGCATCGGCACCTTGCTGTTG
1 GCAGCATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGTT-
* * *
43687490 GGATGTGCGGGAGCCTCGAGCCCCATCGGCACCTTAGTGGCTCAGATGTGCGGGAGCCTCGAGCA
65 GGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCCTCAGATGTGCGGGAGCCTCGAGCA
* ** * *
43687555 CCATCGGCAGATTGGTGCTGGGATGTGTGGGAGACTCGAGCAGCATCGGTACCTTGGTGGCTCGG
130 GCATCGGCACCTTGGTGCTTGGATGTGCGGGAGACTCGAGCAGCATCGGTACCTTGGTGGCTCGG
* *
43687620 ATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGATGTGTGGGAGCCTCGAGCACCA
195 ATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTGGGATGTGCGGGAGCCTCGAGCACCA
* * *
43687685 TCGGCACCTTGGTGGCTCGGATGTACGAGAGCCTGGA
260 TCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGA
* * ** *
43687722 GCACCATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGAGCAGAATCGGCACCTTGGTGCTG
1 GCAGCATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTG-TT
* * *
43687787 GGATGTGCGGGAGCCTCGAACAGCATCGGCACCTTGGTGCCTCGGATGTGCGGGAGCCTCGAGCA
65 GGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCCTCAGATGTGCGGGAGCCTCGAGCA
* * * * *
43687852 GCATCGGTACCTTGGTGCTTGGATGTGGGGGAGCCTCGTGCACCATCGGTACCTTGGTGGCTCGG
130 GCATCGGCACCTTGGTGCTTGGATGTGCGGGAGACTCGAGCAGCATCGGTACCTTGGTGGCTCGG
* * * *
43687917 ATGTGTGGGAGCCTCGAGCAGCATCGGCACCTTGGTGCTGGGATGTGCGGGAGCCTCGACCAGCA
195 ATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTGGGATGTGCGGGAGCCTCGAGCACCA
**
43687982 TCGGCACCTTGGTGGCTCGGATGTGTAGGAGCCTCGA
260 TCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGA
* *
43688019 CCAGCATCGGCACCTTGGGGGCTCGGATGTGCGGGAGCCTCG-GACACCATCGGCAACCTTGGTG
1 GCAGCATCGGCACCTT-GGTGCTCGGATGTGCGGGAGCCTCGAG-CACCATCGGC-ACCTTGGT-
*
43688083 GTTGGATGTGTGGGAGCCTCGAGCACCATCGGCACCTTGGTGCCT-AGGATGTGCGGG
62 GTTGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCCTCA-GATGTGCGGG
43688140 CTAAAGGAAA
Statistics
Matches: 622, Mismatches: 84, Indels: 17
0.86 0.12 0.02
Matches are distributed among these distances:
296 2 0.00
297 510 0.82
298 51 0.08
299 58 0.09
300 1 0.00
ACGTcount: A:0.16, C:0.26, G:0.37, T:0.21
Consensus pattern (296 bp):
GCAGCATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGTTG
GATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCCTCAGATGTGCGGGAGCCTCGAGCAG
CATCGGCACCTTGGTGCTTGGATGTGCGGGAGACTCGAGCAGCATCGGTACCTTGGTGGCTCGGA
TGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTGGGATGTGCGGGAGCCTCGAGCACCAT
CGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGA
Found at i:43693212 original size:43 final size:43
Alignment explanation
Indices: 43693164--43693331 Score: 196
Period size: 43 Copynumber: 3.9 Consensus size: 43
43693154 CTCCCCACAG
* * *
43693164 CCGGCACCTTGGTGGCTCGGATGCGCGGGAGCCTTGCGCAGCA
1 CCGGCACCTTGGTGGCTCGGATGCGCCGGAGCCTCGAGCAGCA
43693207 CCGGCACCTTGGTGGCTCGGATGCGCCGGAGCCTCGAGCAGCA
1 CCGGCACCTTGGTGGCTCGGATGCGCCGGAGCCTCGAGCAGCA
* * * * * *
43693250 TCGGCACCTAGGAGG-TCAGATGTGCCGGAGCCTCGAGCACCA
1 CCGGCACCTTGGTGGCTCGGATGCGCCGGAGCCTCGAGCAGCA
* * **
43693292 TCC-GCACCTTGGTGCCTCGGATGTGTGGGAGCCTCGAGCA
1 -CCGGCACCTTGGTGGCTCGGATGCGCCGGAGCCTCGAGCA
43693332 CCATCCACAA
Statistics
Matches: 107, Mismatches: 16, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
42 33 0.31
43 74 0.69
ACGTcount: A:0.15, C:0.32, G:0.36, T:0.17
Consensus pattern (43 bp):
CCGGCACCTTGGTGGCTCGGATGCGCCGGAGCCTCGAGCAGCA
Found at i:43694927 original size:42 final size:43
Alignment explanation
Indices: 43694850--43695185 Score: 441
Period size: 42 Copynumber: 7.9 Consensus size: 43
43694840 CACATGGCAG
43694850 CATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCAC
1 CATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCAC
* *
43694893 CATCGGCACCTTGGT-GCTTGGATGTGCGGGAGCCTCGACCAC
1 CATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCAC
* * *
43694935 CATCGTCACCTTGGTGGCTCGGATATGCGGGAGACTCGAGCAC
1 CATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCAC
* * * *
43694978 CATCGGCACCTTGGT-GCTTGGATGTACGGGAGTCTCGACCAC
1 CATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCAC
* * * *
43695020 CATCGTCACCTTGGTGGCTCGGATGTGCGAGAGACTCGAGCAG
1 CATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCAC
* *
43695063 CATCGGCACCTTGGT-GCTTGGATGTACGGGAGCCTCGAGC-C
1 CATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCAC
* * *
43695104 GCATCGGCACCTTGGT-GCTGGGATGTGCTGGAGCCCCGAGC-C
1 -CATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCAC
*
43695146 GCATCGGCACCTTAGTGGCTCGGATGTGCGGGAGCCTCGA
1 -CATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGA
43695186 AAAGTTATTC
Statistics
Matches: 255, Mismatches: 34, Indels: 8
0.86 0.11 0.03
Matches are distributed among these distances:
42 148 0.58
43 107 0.42
ACGTcount: A:0.15, C:0.29, G:0.35, T:0.21
Consensus pattern (43 bp):
CATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCAC
Found at i:43694967 original size:85 final size:85
Alignment explanation
Indices: 43694850--43695185 Score: 480
Period size: 85 Copynumber: 4.0 Consensus size: 85
43694840 CACATGGCAG
*
43694850 CATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGA
1 CATCGGCACCTTGGTGGCTCGGATGTGCGGGAGACTCGAGCACCATCGGCACCTTGGTGCTTGGA
*
43694915 TGTGCGGGAGCCTCGACCAC
66 TGTACGGGAGCCTCGACCAC
* *
43694935 CATCGTCACCTTGGTGGCTCGGATATGCGGGAGACTCGAGCACCATCGGCACCTTGGTGCTTGGA
1 CATCGGCACCTTGGTGGCTCGGATGTGCGGGAGACTCGAGCACCATCGGCACCTTGGTGCTTGGA
*
43695000 TGTACGGGAGTCTCGACCAC
66 TGTACGGGAGCCTCGACCAC
* * *
43695020 CATCGTCACCTTGGTGGCTCGGATGTGCGAGAGACTCGAGCAGCATCGGCACCTTGGTGCTTGGA
1 CATCGGCACCTTGGTGGCTCGGATGTGCGGGAGACTCGAGCACCATCGGCACCTTGGTGCTTGGA
*
43695085 TGTACGGGAGCCTCGAGCC-G
66 TGTACGGGAGCCTCGA-CCAC
* * * * * *
43695105 CATCGGCACCTTGGT-GCTGGGATGTGCTGGAGCCCCGAGC-CGCATCGGCACCTTAGTGGCTCG
1 CATCGGCACCTTGGTGGCTCGGATGTGCGGGAGACTCGAGCAC-CATCGGCACCTTGGT-GCTTG
*
43695168 GATGTGCGGGAGCCTCGA
64 GATGTACGGGAGCCTCGA
43695186 AAAGTTATTC
Statistics
Matches: 228, Mismatches: 20, Indels: 6
0.90 0.08 0.02
Matches are distributed among these distances:
84 34 0.15
85 192 0.84
86 2 0.01
ACGTcount: A:0.15, C:0.29, G:0.35, T:0.21
Consensus pattern (85 bp):
CATCGGCACCTTGGTGGCTCGGATGTGCGGGAGACTCGAGCACCATCGGCACCTTGGTGCTTGGA
TGTACGGGAGCCTCGACCAC
Found at i:43695033 original size:127 final size:127
Alignment explanation
Indices: 43694849--43695185 Score: 437
Period size: 127 Copynumber: 2.6 Consensus size: 127
43694839 GCACATGGCA
* *
43694849 GCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGT-GCTTG
1 GCATCGGCACCTTGGT-GCTCGGATGTGCGGGAGCCTCGACCACCATCGGCACCTTGGTGGCTCG
* *
43694913 GATGTGCGGGAGCCTCGACCACCATCGTCACCTTGGTGGCTCGGATATGCGGGAGACTCGAGCAC
65 GATGTGCGGGAGCCTCGACCACCATCGGCACCTTGGT-GCTCGGATATACGGGAGACTCGAGC-C
* * * *
43694978 -CATCGGCACCTTGGTGCTTGGATGTACGGGAGTCTCGACCACCATCGTCACCTTGGTGGCTCGG
1 GCATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGACCACCATCGGCACCTTGGTGGCTCGG
* * * * * * *
43695042 ATGTGCGAGAGACTCGAGCAGCATCGGCACCTTGGTGCTTGGATGTACGGGAGCCTCGAGCC
66 ATGTGCGGGAGCCTCGACCACCATCGGCACCTTGGTGCTCGGATATACGGGAGACTCGAGCC
* * * * *
43695104 GCATCGGCACCTTGGTGCTGGGATGTGCTGGAGCCCCGAGCC-GCATCGGCACCTTAGTGGCTCG
1 GCATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGA-CCACCATCGGCACCTTGGTGGCTCG
43695168 GATGTGCGGGAGCCTCGA
65 GATGTGCGGGAGCCTCGA
43695186 AAAGTTATTC
Statistics
Matches: 180, Mismatches: 25, Indels: 8
0.85 0.12 0.04
Matches are distributed among these distances:
126 1 0.01
127 126 0.70
128 53 0.29
ACGTcount: A:0.15, C:0.29, G:0.35, T:0.21
Consensus pattern (127 bp):
GCATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGACCACCATCGGCACCTTGGTGGCTCGG
ATGTGCGGGAGCCTCGACCACCATCGGCACCTTGGTGCTCGGATATACGGGAGACTCGAGCC
Found at i:43695339 original size:25 final size:25
Alignment explanation
Indices: 43695311--43695371 Score: 97
Period size: 25 Copynumber: 2.4 Consensus size: 25
43695301 TCACCGTTTA
43695311 GTTTCAATTGATTT-CACCACGCACC
1 GTTTCAATTG-TTTCCACCACGCACC
*
43695336 GTTTCAATTGTTTCCACGACGCACC
1 GTTTCAATTGTTTCCACCACGCACC
43695361 GTTTCAATTGT
1 GTTTCAATTGT
43695372 GAAATTCACA
Statistics
Matches: 34, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
24 3 0.09
25 31 0.91
ACGTcount: A:0.21, C:0.28, G:0.15, T:0.36
Consensus pattern (25 bp):
GTTTCAATTGTTTCCACCACGCACC
Found at i:43702766 original size:25 final size:25
Alignment explanation
Indices: 43702736--43702816 Score: 108
Period size: 25 Copynumber: 3.2 Consensus size: 25
43702726 TATCCTCACT
* * *
43702736 CGAGCTGTAGATCAGTTTGCTCTCA
1 CGAGCTATAAATCAGTATGCTCTCA
*
43702761 CGAGCTATAAATCGGTATGCTCTCA
1 CGAGCTATAAATCAGTATGCTCTCA
* *
43702786 CAAGATATAAATCAGTATGCTCTCA
1 CGAGCTATAAATCAGTATGCTCTCA
43702811 CGAGCT
1 CGAGCT
43702817 GTGGAGTATG
Statistics
Matches: 47, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
25 47 1.00
ACGTcount: A:0.28, C:0.23, G:0.20, T:0.28
Consensus pattern (25 bp):
CGAGCTATAAATCAGTATGCTCTCA
Found at i:43706610 original size:16 final size:16
Alignment explanation
Indices: 43706580--43706622 Score: 61
Period size: 16 Copynumber: 2.8 Consensus size: 16
43706570 GAATAGATAT
*
43706580 GTGAAT-AACAAATAA
1 GTGAATAAATAAATAA
43706595 GTGAATAAATAAATAA
1 GTGAATAAATAAATAA
*
43706611 GTGAACAAATAA
1 GTGAATAAATAA
43706623 GTGAAAAACC
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
15 6 0.24
16 19 0.76
ACGTcount: A:0.60, C:0.05, G:0.14, T:0.21
Consensus pattern (16 bp):
GTGAATAAATAAATAA
Found at i:43720736 original size:21 final size:21
Alignment explanation
Indices: 43720711--43720753 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
43720701 ATTGTTGAGA
* *
43720711 AGGAAGTTGCTGCTGTAGAAG
1 AGGAAGTTACTGCTGAAGAAG
*
43720732 AGGAAGTTATTGCTGAAGAAG
1 AGGAAGTTACTGCTGAAGAAG
43720753 A
1 A
43720754 AGTTGTTGAA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.35, C:0.07, G:0.35, T:0.23
Consensus pattern (21 bp):
AGGAAGTTACTGCTGAAGAAG
Found at i:43723550 original size:44 final size:45
Alignment explanation
Indices: 43723463--43723581 Score: 115
Period size: 44 Copynumber: 2.7 Consensus size: 45
43723453 TTGTTATGTG
*
43723463 TTATCGTGTAAGACCACATCTGGGACGTTGGCATCGACTTGTGAC
1 TTATCGTGTAAGACCACATCTGAGACGTTGGCATCGACTTGTGAC
43723508 TTAT-GTGTAAGACC-CTATCTGAGACAG-TGGCATCGA-TATGTGA-
1 TTATCGTGTAAGACCAC-ATCTGAGAC-GTTGGCATCGACT-TGTGAC
* * * * *
43723551 TTA-CATGTAAAACCACGTCTGGGACGATGGC
1 TTATCGTGTAAGACCACATCTGAGACGTTGGC
43723582 GTTGTACGAA
Statistics
Matches: 63, Mismatches: 5, Indels: 14
0.77 0.06 0.17
Matches are distributed among these distances:
42 1 0.02
43 24 0.38
44 33 0.52
45 5 0.08
ACGTcount: A:0.26, C:0.20, G:0.26, T:0.28
Consensus pattern (45 bp):
TTATCGTGTAAGACCACATCTGAGACGTTGGCATCGACTTGTGAC
Found at i:43727595 original size:29 final size:29
Alignment explanation
Indices: 43727517--43727621 Score: 90
Period size: 29 Copynumber: 3.6 Consensus size: 29
43727507 CGAAGCTATT
* *
43727517 CCTTTTCATATTC-AAATGTCGTCA-CAGTC
1 CCTTTTCATAATCGATA-GTCGTCACCA-TC
* * *
43727546 CCTTTTCATAGTTGATGGTCGTCACCATC
1 CCTTTTCATAATCGATAGTCGTCACCATC
* *
43727575 CCTTTTCATAATCGATAGTCG-AAGCTATC
1 CCTTTTCATAATCGATAGTCGTCA-CCATC
*
43727604 CCTTTTCATAATTGATAG
1 CCTTTTCATAATCGATAG
43727622 CCAAAGCTAT
Statistics
Matches: 63, Mismatches: 10, Indels: 6
0.80 0.13 0.08
Matches are distributed among these distances:
28 1 0.02
29 59 0.94
30 3 0.05
ACGTcount: A:0.24, C:0.25, G:0.13, T:0.38
Consensus pattern (29 bp):
CCTTTTCATAATCGATAGTCGTCACCATC
Found at i:43727628 original size:29 final size:29
Alignment explanation
Indices: 43727572--43727641 Score: 113
Period size: 29 Copynumber: 2.4 Consensus size: 29
43727562 GGTCGTCACC
* *
43727572 ATCCCTTTTCATAATCGATAGTCGAAGCT
1 ATCCCTTTTCATAATCGATAGCCAAAGCT
*
43727601 ATCCCTTTTCATAATTGATAGCCAAAGCT
1 ATCCCTTTTCATAATCGATAGCCAAAGCT
43727630 ATCCCTTTTCAT
1 ATCCCTTTTCAT
43727642 TGGTCGATAA
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 38 1.00
ACGTcount: A:0.27, C:0.26, G:0.10, T:0.37
Consensus pattern (29 bp):
ATCCCTTTTCATAATCGATAGCCAAAGCT
Found at i:43730849 original size:371 final size:371
Alignment explanation
Indices: 43730052--43731169 Score: 1828
Period size: 371 Copynumber: 3.0 Consensus size: 371
43730042 CGGGACTTGT
*
43730052 GTGAAATGTGATATATGCTTAATTGAATATGTGTTGCATGATATATGTTCACATGAGTGTGAAAT
1 GTGAAATGTGATATATGCTTAATTGAATATGTGTTGCATGATATATGTTCGCATGAGTGTGAAAT
* * *
43730117 TACTACATAAATGAACTAGTAGATATTGCATGAACGGGAATTGTATGATACTAGACATAAGATTA
66 TACTACATAAATGAACTAATAGATATTGCATGAACGGGAACTATATGATACTAGACATAAGATTA
**
43730182 TTGTAATCGTACTTATATATGGTTGTCTTGTGGATGCATGATGATATGTTTGTAATGTGGTTATT
131 TTGTAATCGTACTTATATATGGTTGTCTTGTGGATGCATGATGATATGTTTGCGATGTGGTTATT
* *
43730247 CTAGTCATTCACTGAGCTTGTTAAGCTCA-CCGGTCCTTTCTTGTAACATCCTAAAAATCA-GGG
196 CTAGTCATTCACTGAGCTTGTTAAGCTCACCCGCTCCCTTCTTGTAACATCCTAAAAAT-ATGGG
* *
43730310 GTTAGTATAATCGAGTTTGTGAAGCAAGAGAGAGTGGTCATGCCTTAATTTTTGAGATTATCTAT
260 GTTAGTAGAATCGAGTTTGTGAATCAAGAGAGAGTGGTCATGCCTTAATTTTTGAGATTATCTAT
* *
43730375 GCATTTTTAGGAAATAAATAAGGTATTGGTTTGTTGGTTAAGTGTTA
325 GCATTTTTAGAAAATAAATGAGGTATTGGTTTGTTGGTTAAGTGTTA
* * * *
43730422 CTGAAATGTTATATATGCTTAATTGAATATGTGTTTCATGATATATGTTTGCATGAGTGTGAAAT
1 GTGAAATGTGATATATGCTTAATTGAATATGTGTTGCATGATATATGTTCGCATGAGTGTGAAAT
* *
43730487 TGCTACATAAATGAACTAATAGATATTGCATGAACGGGAACTATATGATACTAGACCTAAGATTA
66 TACTACATAAATGAACTAATAGATATTGCATGAACGGGAACTATATGATACTAGACATAAGATTA
* * *
43730552 TTATAATCGTACTTAAAAATGGTTGTCTTGTGGATGCATGATGATATGTTTGCGATGTGGTTATT
131 TTGTAATCGTACTTATATATGGTTGTCTTGTGGATGCATGATGATATGTTTGCGATGTGGTTATT
*
43730617 CTAGTCATTCACTGAGCTTGTTAAACTCACCCGCTCCCTTCTTGTAACATCCTAAAAATATGGGG
196 CTAGTCATTCACTGAGCTTGTTAAGCTCACCCGCTCCCTTCTTGTAACATCCTAAAAATATGGGG
*
43730682 TTAGTAGAATCGAGTTTGTGAATCAAGAAAGAGTGGTCATGCCTTAATTTTTGAGATTATCTATG
261 TTAGTAGAATCGAGTTTGTGAATCAAGAGAGAGTGGTCATGCCTTAATTTTTGAGATTATCTATG
* * * * *
43730747 CGTTTTTAGTAAATAAATGAGATATTTGTTTGTTGGTTAAGTGTTG
326 CATTTTTAGAAAATAAATGAGGTATTGGTTTGTTGGTTAAGTGTTA
** *
43730793 GTGAAATAAGATATATGCTTAATTAAATATGTGTTGCATGATATATGTTCGCATGAGTGTGAAAT
1 GTGAAATGTGATATATGCTTAATTGAATATGTGTTGCATGATATATGTTCGCATGAGTGTGAAAT
* *
43730858 TTCTACATAAGTGAACTAATAGATATTGCATGAACGGGAACTATATGATACTAGACATAAGATTA
66 TACTACATAAATGAACTAATAGATATTGCATGAACGGGAACTATATGATACTAGACATAAGATTA
* *
43730923 TTGTAATTGTACTTATATATGGTTGTCTTATGGATGCATGATGATATGTTTGCGATGTGGTTATT
131 TTGTAATCGTACTTATATATGGTTGTCTTGTGGATGCATGATGATATGTTTGCGATGTGGTTATT
*
43730988 CTAGTCATTCACTGAGCTTGTTAAGCTCACTCGCTCCCTTCTTGTAACATCCTAAAAAT-TGGGG
196 CTAGTCATTCACTGAGCTTGTTAAGCTCACCCGCTCCCTTCTTGTAACATCCTAAAAATATGGGG
* * * *
43731052 CTTAGTAGAATCGGGGTTGTGAATTAAGAGAGAGTGGTCATGCCTTAATTTTTTAGATTATCTAT
261 -TTAGTAGAATCGAGTTTGTGAATCAAGAGAGAGTGGTCATGCCTTAATTTTTGAGATTATCTAT
*
43731117 GCATTTTTAGAAAATAAATGAGGTATTGGTTTGTTGATTAAGTGTTA
325 GCATTTTTAGAAAATAAATGAGGTATTGGTTTGTTGGTTAAGTGTTA
43731164 GTGAAA
1 GTGAAA
43731170 CATTCCTTAA
Statistics
Matches: 690, Mismatches: 55, Indels: 5
0.92 0.07 0.01
Matches are distributed among these distances:
370 214 0.31
371 476 0.69
ACGTcount: A:0.30, C:0.11, G:0.21, T:0.38
Consensus pattern (371 bp):
GTGAAATGTGATATATGCTTAATTGAATATGTGTTGCATGATATATGTTCGCATGAGTGTGAAAT
TACTACATAAATGAACTAATAGATATTGCATGAACGGGAACTATATGATACTAGACATAAGATTA
TTGTAATCGTACTTATATATGGTTGTCTTGTGGATGCATGATGATATGTTTGCGATGTGGTTATT
CTAGTCATTCACTGAGCTTGTTAAGCTCACCCGCTCCCTTCTTGTAACATCCTAAAAATATGGGG
TTAGTAGAATCGAGTTTGTGAATCAAGAGAGAGTGGTCATGCCTTAATTTTTGAGATTATCTATG
CATTTTTAGAAAATAAATGAGGTATTGGTTTGTTGGTTAAGTGTTA
Found at i:43736266 original size:70 final size:70
Alignment explanation
Indices: 43736164--43736320 Score: 208
Period size: 70 Copynumber: 2.2 Consensus size: 70
43736154 CAGCTTATCT
*
43736164 GACTAGTGCTGGGCACAACTATCGTCGATTAT-CAGATTACTGCTAGGCACAATAATTTGTCGAC
1 GACTAGTGCTGGGCACAACTATCGTCGATTATCCA-ACTACTGCTAGGCACAATAATTTGTCGAC
43736228 TCGTTC
65 TCGTTC
* * * * * **
43736234 GACTAGTGTTTGGCATAACTATCGTCGGTTATCCAACTAGTGCTAGGCGTAATAATTTGTCGACT
1 GACTAGTGCTGGGCACAACTATCGTCGATTATCCAACTACTGCTAGGCACAATAATTTGTCGACT
* *
43736299 CTTTT
66 CGTTC
43736304 GACTAGTGCTGGGCACA
1 GACTAGTGCTGGGCACA
43736321 CAAATGATCT
Statistics
Matches: 73, Mismatches: 13, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
70 71 0.97
71 2 0.03
ACGTcount: A:0.24, C:0.21, G:0.23, T:0.32
Consensus pattern (70 bp):
GACTAGTGCTGGGCACAACTATCGTCGATTATCCAACTACTGCTAGGCACAATAATTTGTCGACT
CGTTC
Found at i:43737302 original size:55 final size:53
Alignment explanation
Indices: 43737223--43737348 Score: 128
Period size: 55 Copynumber: 2.3 Consensus size: 53
43737213 ACACGGCCTA
* * *** *
43737223 ACACGACCTGGCACACGGGCGTGTGGGGCAACTCAGAGAGTTACAC-GGTCAGG
1 ACACGAGCTGGGACAC-GGCGTGTGACCCAACTCAAAGAGTTACACGGGTCAGG
* * *
43737276 CACACGAGCGTGTGACACGGCTGTGTGACCCTACTCAAAGAGTTACACGGGTGAGG
1 -ACACGAGC-TGGGACACGGC-GTGTGACCCAACTCAAAGAGTTACACGGGTCAGG
43737332 ACACGAGCTGGGACACG
1 ACACGAGCTGGGACACG
43737349 ATCGTTTGTC
Statistics
Matches: 59, Mismatches: 10, Indels: 6
0.79 0.13 0.08
Matches are distributed among these distances:
54 18 0.31
55 35 0.59
56 6 0.10
ACGTcount: A:0.25, C:0.26, G:0.34, T:0.14
Consensus pattern (53 bp):
ACACGAGCTGGGACACGGCGTGTGACCCAACTCAAAGAGTTACACGGGTCAGG
Found at i:43740538 original size:149 final size:155
Alignment explanation
Indices: 43740273--43740673 Score: 486
Period size: 150 Copynumber: 2.6 Consensus size: 155
43740263 TAGTGTTTTT
* *
43740273 TTAGTTATTTTAAAGGAAAGTTTAAAATTTTAAAACAAAATTTTTATTTTTTTTCCT-ACTATTT
1 TTAGTTATTTTAAAGGAAAGTTTAAATTTTTAAAACAAAATTTTGATTTTTTTT--TAACTATTT
* *
43740337 CAAAGTAAAAGCTTTAATCTTTAAG--AAAAATAGTGTTTTTTTTAAATAAAAAAAA-GAG-AGT
64 CAAAGTAAAAGTTTTAATCTTTAAGAAAAAAATAGTGTTTTTTATAAATAAAAAAAAGGAGAAGT
43740398 TTAGATTTTGAAAAATAA-AAAAA-A-A
129 TTAGATTTTGAAAAA-AATAAAAATATA
* *
43740423 TTAGTTATTTTAAAGGAAAGTTTAAATTTTTAAAACAAAGTTTTGATTTTTTTTTAACTACTTCA
1 TTAGTTATTTTAAAGGAAAGTTTAAATTTTTAAAACAAAATTTTGATTTTTTTTTAACTATTTCA
43740488 AAGTAAAAGTTTTAATCTTTAAGAAAAAAATAGTGTTTTTTAT-AAT-AAAAAAAGGAGAAAGTT
66 AAGTAAAAGTTTTAATCTTTAAGAAAAAAATAGTGTTTTTTATAAATAAAAAAAAGGAG-AAGTT
* *
43740551 TTGATTTTGAAAAAAATAAAAATATGTTTTT
130 TAGATTTTGAAAAAAATAAAAATA-----TA
* *
43740582 TTAAAGTCATTTTAAAGGAAAGTTTAAATTTTTAAAACAAATTTTTGA-TTTTTTTTAACTATTT
1 TT--AGTTATTTTAAAGGAAAGTTTAAATTTTTAAAACAAAATTTTGATTTTTTTTTAACTATTT
* * *
43740646 CGAAA-T-AAGGTTTTGATTTTTAAGAAAA
64 C-AAAGTAAAAGTTTTAATCTTTAAGAAAA
43740674 TTAATGATTT
Statistics
Matches: 220, Mismatches: 14, Indels: 25
0.85 0.05 0.10
Matches are distributed among these distances:
148 1 0.00
149 37 0.17
150 57 0.26
151 19 0.09
152 22 0.10
153 1 0.00
159 21 0.10
160 17 0.08
161 45 0.20
ACGTcount: A:0.43, C:0.04, G:0.10, T:0.42
Consensus pattern (155 bp):
TTAGTTATTTTAAAGGAAAGTTTAAATTTTTAAAACAAAATTTTGATTTTTTTTTAACTATTTCA
AAGTAAAAGTTTTAATCTTTAAGAAAAAAATAGTGTTTTTTATAAATAAAAAAAAGGAGAAGTTT
AGATTTTGAAAAAAATAAAAATATA
Found at i:43744089 original size:23 final size:23
Alignment explanation
Indices: 43744057--43744100 Score: 63
Period size: 23 Copynumber: 1.9 Consensus size: 23
43744047 TAGTTATCAT
*
43744057 TAAAATAATAAAGTAAA-TAAACA
1 TAAAAGAATAAAG-AAACTAAACA
43744080 TAAAAGAATAAAGAAACTAAA
1 TAAAAGAATAAAGAAACTAAA
43744101 AGAGTAAAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 3 0.16
23 16 0.84
ACGTcount: A:0.70, C:0.05, G:0.07, T:0.18
Consensus pattern (23 bp):
TAAAAGAATAAAGAAACTAAACA
Found at i:43744102 original size:17 final size:18
Alignment explanation
Indices: 43744070--43744108 Score: 53
Period size: 17 Copynumber: 2.2 Consensus size: 18
43744060 AATAATAAAG
*
43744070 TAAATAAACATAAAAGAA
1 TAAAGAAACATAAAAGAA
*
43744088 TAAAGAAAC-TAAAAGAG
1 TAAAGAAACATAAAAGAA
43744105 TAAA
1 TAAA
43744109 AAGAAAACAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
17 11 0.58
18 8 0.42
ACGTcount: A:0.69, C:0.05, G:0.10, T:0.15
Consensus pattern (18 bp):
TAAAGAAACATAAAAGAA
Found at i:43744540 original size:22 final size:24
Alignment explanation
Indices: 43744512--43744555 Score: 74
Period size: 23 Copynumber: 1.9 Consensus size: 24
43744502 TATGGCAAGA
43744512 AATTAAG-TAGAAAAG-AAGTATG
1 AATTAAGTTAGAAAAGTAAGTATG
43744534 AATTAAGTTAGAAAAGTAAGTA
1 AATTAAGTTAGAAAAGTAAGTA
43744556 AACTTAGTTA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
22 7 0.35
23 8 0.40
24 5 0.25
ACGTcount: A:0.55, C:0.00, G:0.20, T:0.25
Consensus pattern (24 bp):
AATTAAGTTAGAAAAGTAAGTATG
Found at i:43750466 original size:51 final size:51
Alignment explanation
Indices: 43750408--43750598 Score: 235
Period size: 51 Copynumber: 3.8 Consensus size: 51
43750398 TTGGTTCACA
* *
43750408 TAGTAGCCTGCACATAGTACTACACATGTGATCATCACTAACCGATACACG
1 TAGTAGCCTGCACATAGTACTACACATGTGACCATCACTAACCGGTACACG
* * * *
43750459 TAGTAGCCTGCACATAGTACTACACATGTGATCA-AAGCTATCCGGTACACA
1 TAGTAGCCTGCACATAGTACTACACATGTGACCATCA-CTAACCGGTACACG
* * * *
43750510 TAGTAGCCTGCACATAGTACCACACATGCGACCTATCA-TTA-TGGTACACG
1 TAGTAGCCTGCACATAGTACTACACATGTGACC-ATCACTAACCGGTACACG
* *
43750560 TAGTAGCCTACACATAGTACTACACACGTGACCATCACT
1 TAGTAGCCTGCACATAGTACTACACATGTGACCATCACT
43750599 TTCACTTTCA
Statistics
Matches: 120, Mismatches: 16, Indels: 9
0.83 0.11 0.06
Matches are distributed among these distances:
49 4 0.03
50 38 0.32
51 76 0.63
52 1 0.01
53 1 0.01
ACGTcount: A:0.32, C:0.28, G:0.16, T:0.24
Consensus pattern (51 bp):
TAGTAGCCTGCACATAGTACTACACATGTGACCATCACTAACCGGTACACG
Found at i:43750628 original size:101 final size:102
Alignment explanation
Indices: 43750400--43750593 Score: 275
Period size: 102 Copynumber: 1.9 Consensus size: 102
43750390 TAATGATATT
* * *
43750400 GGTTCACATAGTAGCCTGCACATAGTACTACACATGTGATCATCACTAACCGATACACGTAGTAG
1 GGTTCACATAGTAGCCTGCACATAGTACCACACATGCGACCATCACTAACCGATACACGTAGTAG
* * *
43750465 CCTGCACATAGTACTACACATGTGATCAAAGCTATCC
66 CCTACACATAGTACTACACACGTGACCAAAGCTATCC
* * * *
43750502 GGTACACATAGTAGCCTGCACATAGTACCACACATGCGACCTATCA-TTA-TGGTACACGTAGTA
1 GGTTCACATAGTAGCCTGCACATAGTACCACACATGCGACC-ATCACTAACCGATACACGTAGTA
43750565 GCCTACACATAGTACTACACACGTGACCA
65 GCCTACACATAGTACTACACACGTGACCA
43750594 TCACTTTCAC
Statistics
Matches: 81, Mismatches: 10, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
101 38 0.47
102 39 0.48
103 4 0.05
ACGTcount: A:0.32, C:0.27, G:0.17, T:0.23
Consensus pattern (102 bp):
GGTTCACATAGTAGCCTGCACATAGTACCACACATGCGACCATCACTAACCGATACACGTAGTAG
CCTACACATAGTACTACACACGTGACCAAAGCTATCC
Found at i:43758036 original size:17 final size:18
Alignment explanation
Indices: 43758000--43758040 Score: 57
Period size: 17 Copynumber: 2.3 Consensus size: 18
43757990 AAAATAATAA
* *
43758000 AGTAAATAAACATTAAAG
1 AGTAAAGAAACATAAAAG
43758018 AGTAAAGAAAC-TAAAAG
1 AGTAAAGAAACATAAAAG
43758035 AGTAAA
1 AGTAAA
43758041 AAGAAAACAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
17 11 0.52
18 10 0.48
ACGTcount: A:0.63, C:0.05, G:0.15, T:0.17
Consensus pattern (18 bp):
AGTAAAGAAACATAAAAG
Found at i:43758543 original size:14 final size:15
Alignment explanation
Indices: 43758467--43758543 Score: 52
Period size: 14 Copynumber: 5.0 Consensus size: 15
43758457 AATTGACAGT
*
43758467 AAAATG-TTTTCCGG
1 AAAATGATTTTCTGG
43758481 AAAATGA-TTTCTGG
1 AAAATGATTTTCTGG
* *
43758495 AAAATATTTTACTTTTCTGT
1 -AAA-A--TGA-TTTTCTGG
*
43758515 AAAATGATTTACTGG
1 AAAATGATTTTCTGG
43758530 AAAAT-ATTTTCTGG
1 AAAATGATTTTCTGG
43758544 TGTTTGATTG
Statistics
Matches: 49, Mismatches: 7, Indels: 14
0.70 0.10 0.20
Matches are distributed among these distances:
14 20 0.41
15 14 0.29
16 3 0.06
18 3 0.06
19 3 0.06
20 6 0.12
ACGTcount: A:0.34, C:0.09, G:0.16, T:0.42
Consensus pattern (15 bp):
AAAATGATTTTCTGG
Found at i:43758722 original size:22 final size:24
Alignment explanation
Indices: 43758697--43758747 Score: 56
Period size: 26 Copynumber: 2.2 Consensus size: 24
43758687 TTATTTATAA
43758697 ATAAATAA-A-TCAA-ATT-AAAT
1 ATAAATAACACTCAATATTAAAAT
43758717 ATATAATAACACTCAATTATTAAAAT
1 ATA-AATAACACTCAA-TATTAAAAT
43758743 ATAAA
1 ATAAA
43758748 AGCATTGCAA
Statistics
Matches: 25, Mismatches: 0, Indels: 7
0.78 0.00 0.22
Matches are distributed among these distances:
20 3 0.12
21 5 0.20
22 1 0.04
23 4 0.16
25 5 0.20
26 7 0.28
ACGTcount: A:0.61, C:0.08, G:0.00, T:0.31
Consensus pattern (24 bp):
ATAAATAACACTCAATATTAAAAT
Found at i:43762365 original size:23 final size:21
Alignment explanation
Indices: 43762322--43762369 Score: 53
Period size: 23 Copynumber: 2.1 Consensus size: 21
43762312 AGACCCTAAG
43762322 TAGAAAAGAAGTATCAATTAGGT
1 TAGAAAAGAAGTA-CAATTA-GT
43762345 TAGAAAAGTAAGTA-AACTTAGT
1 TAGAAAAG-AAGTACAA-TTAGT
43762367 TAG
1 TAG
43762370 GATTAAATTG
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
22 7 0.30
23 11 0.48
24 5 0.22
ACGTcount: A:0.48, C:0.04, G:0.21, T:0.27
Consensus pattern (21 bp):
TAGAAAAGAAGTACAATTAGT
Found at i:43765072 original size:27 final size:27
Alignment explanation
Indices: 43765042--43765210 Score: 200
Period size: 27 Copynumber: 6.3 Consensus size: 27
43765032 GGCGAACCCT
* *
43765042 AAAGGAATGTCTTTGTGACGCAATATG
1 AAAGGAATGCCTTTGTGGCGCAATATG
*
43765069 AAAGGAACGCCTTTGTGGCGCAATATG
1 AAAGGAATGCCTTTGTGGCGCAATATG
*
43765096 AAAGGAACGCCTTTGTGGCGCAATATG
1 AAAGGAATGCCTTTGTGGCGCAATATG
43765123 AAAGGAATGCCTTTGTGGCGCAATATG
1 AAAGGAATGCCTTTGTGGCGCAATATG
* * ** *
43765150 TAAGAGTAT-CCTTTGTTACGAAATATG
1 AAAG-GAATGCCTTTGTGGCGCAATATG
* *
43765177 AAA-GAGTAGCCTTTGTGGCGAAATATG
1 AAAGGAAT-GCCTTTGTGGCGCAATATG
43765204 -AAGGAAT
1 AAAGGAAT
43765211 AACCTCTATG
Statistics
Matches: 123, Mismatches: 15, Indels: 8
0.84 0.10 0.05
Matches are distributed among these distances:
25 2 0.02
26 2 0.02
27 116 0.94
28 3 0.02
ACGTcount: A:0.33, C:0.14, G:0.27, T:0.27
Consensus pattern (27 bp):
AAAGGAATGCCTTTGTGGCGCAATATG
Found at i:43765222 original size:27 final size:27
Alignment explanation
Indices: 43765168--43765222 Score: 65
Period size: 27 Copynumber: 2.0 Consensus size: 27
43765158 TCCTTTGTTA
* * * *
43765168 CGAAATATGAAAGAGTAGCCTTTGTGG
1 CGAAATATGAAAGAATAACCTCTATGG
*
43765195 CGAAATATGAAGGAATAACCTCTATGG
1 CGAAATATGAAAGAATAACCTCTATGG
43765222 C
1 C
43765223 AAACCCTGTA
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.36, C:0.15, G:0.25, T:0.24
Consensus pattern (27 bp):
CGAAATATGAAAGAATAACCTCTATGG
Found at i:43772040 original size:83 final size:83
Alignment explanation
Indices: 43771901--43772057 Score: 228
Period size: 83 Copynumber: 1.9 Consensus size: 83
43771891 TAAAACTACC
*
43771901 GTCACTGAACAAATGATAAACAACAATCTCAGCAACTTTTTAAAGGCAAAGCCAAGCACAAATGA
1 GTCACTGAACAAATGAAAAACAACAATCTCAGCAACTTTTTAAAGGCAAAGCCAAGCACAAATGA
*
43771966 AGAATAGAAGCAATTACT
66 AGAACAGAAGCAATTACT
* * * *
43771984 GTCACTGAACAAATTAAAAACAACAATCTCAGCAACTTTTTAGAA-GC-ACGACCAAGCATAATT
1 GTCACTGAACAAATGAAAAACAACAATCTCAGCAACTTTTTA-AAGGCAAAG-CCAAGCACAAAT
43772047 GAAGAACAGAA
64 GAAGAACAGAA
43772058 ACTACCGTTA
Statistics
Matches: 66, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
82 2 0.03
83 62 0.94
84 2 0.03
ACGTcount: A:0.47, C:0.20, G:0.14, T:0.19
Consensus pattern (83 bp):
GTCACTGAACAAATGAAAAACAACAATCTCAGCAACTTTTTAAAGGCAAAGCCAAGCACAAATGA
AGAACAGAAGCAATTACT
Found at i:43773513 original size:14 final size:14
Alignment explanation
Indices: 43773494--43773520 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
43773484 AGCGGAAAGC
43773494 TTTTGCTTAGCTGG
1 TTTTGCTTAGCTGG
43773508 TTTTGCTTAGCTG
1 TTTTGCTTAGCTG
43773521 TTTCTTCGTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.07, C:0.15, G:0.26, T:0.52
Consensus pattern (14 bp):
TTTTGCTTAGCTGG
Found at i:43775154 original size:20 final size:21
Alignment explanation
Indices: 43775103--43775155 Score: 60
Period size: 18 Copynumber: 2.7 Consensus size: 21
43775093 AAATCATTGC
43775103 AATATATGTAAAAA-TAATTT
1 AATATATGTAAAAATTAATTT
* *
43775123 AA-A-ATATAAAAATTTA-TT
1 AATATATGTAAAAATTAATTT
43775141 AATATATGTAAAAAT
1 AATATATGTAAAAAT
43775156 AACTTTTTCG
Statistics
Matches: 27, Mismatches: 3, Indels: 6
0.75 0.08 0.17
Matches are distributed among these distances:
18 12 0.44
19 4 0.15
20 11 0.41
ACGTcount: A:0.58, C:0.00, G:0.04, T:0.38
Consensus pattern (21 bp):
AATATATGTAAAAATTAATTT
Found at i:43775289 original size:34 final size:35
Alignment explanation
Indices: 43775232--43775298 Score: 109
Period size: 34 Copynumber: 1.9 Consensus size: 35
43775222 CAAACACCAG
*
43775232 AAAATATTTTCCAGTAAATCATTTTACAGAAAAGT
1 AAAAAATTTTCCAGTAAATCATTTTACAGAAAAGT
*
43775267 AAAAAATTTTCCAG-AAATCATTTTACGGAAAA
1 AAAAAATTTTCCAGTAAATCATTTTACAGAAAA
43775299 TATTTTACTG
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
34 17 0.57
35 13 0.43
ACGTcount: A:0.48, C:0.12, G:0.09, T:0.31
Consensus pattern (35 bp):
AAAAAATTTTCCAGTAAATCATTTTACAGAAAAGT
Found at i:43778101 original size:18 final size:18
Alignment explanation
Indices: 43778078--43778114 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
43778068 ACGGAGGAAG
*
43778078 ACGATGGAGATGAAGACA
1 ACGATGGAGACGAAGACA
43778096 ACGATGGAGACGAAGACA
1 ACGATGGAGACGAAGACA
43778114 A
1 A
43778115 ATACAGGGGT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.46, C:0.14, G:0.32, T:0.08
Consensus pattern (18 bp):
ACGATGGAGACGAAGACA
Found at i:43781241 original size:19 final size:20
Alignment explanation
Indices: 43781197--43781295 Score: 121
Period size: 20 Copynumber: 5.0 Consensus size: 20
43781187 TTGTACAAGA
*
43781197 TTGCACTTTGGTGCCTCTGT
1 TTGCACTTCGGTGCCTCTGT
* *
43781217 TTGCACTTCGATGCCTTTG-
1 TTGCACTTCGGTGCCTCTGT
43781236 TTGCACTTCGGTGCCTCTGT
1 TTGCACTTCGGTGCCTCTGT
* * *
43781256 TTGCCCTTCGGTGCCTTTAT
1 TTGCACTTCGGTGCCTCTGT
*
43781276 TT-CACTTTGGTGCCTCTGT
1 TTGCACTTCGGTGCCTCTGT
43781295 T
1 T
43781296 AGTATTTCAA
Statistics
Matches: 66, Mismatches: 12, Indels: 3
0.81 0.15 0.04
Matches are distributed among these distances:
19 31 0.47
20 35 0.53
ACGTcount: A:0.06, C:0.27, G:0.22, T:0.44
Consensus pattern (20 bp):
TTGCACTTCGGTGCCTCTGT
Found at i:43781251 original size:39 final size:39
Alignment explanation
Indices: 43781196--43781295 Score: 155
Period size: 39 Copynumber: 2.6 Consensus size: 39
43781186 CTTGTACAAG
43781196 ATTGCACTTTGGTGCCTCTGTTTGCACTTCGATGCCTTT
1 ATTGCACTTTGGTGCCTCTGTTTGCACTTCGATGCCTTT
* * * *
43781235 GTTGCACTTCGGTGCCTCTGTTTGCCCTTCGGTGCCTTT
1 ATTGCACTTTGGTGCCTCTGTTTGCACTTCGATGCCTTT
*
43781274 ATTTCACTTTGGTGCCTCTGTT
1 ATTGCACTTTGGTGCCTCTGTT
43781296 AGTATTTCAA
Statistics
Matches: 54, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
39 54 1.00
ACGTcount: A:0.07, C:0.27, G:0.22, T:0.44
Consensus pattern (39 bp):
ATTGCACTTTGGTGCCTCTGTTTGCACTTCGATGCCTTT
Found at i:43783535 original size:19 final size:18
Alignment explanation
Indices: 43783495--43783535 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 18
43783485 AATATTACAC
*
43783495 ATTTCAATTTCACATTAA
1 ATTTCAATTTCACACTAA
*
43783513 ATTTCAATTTTCACACTAT
1 ATTTCAA-TTTCACACTAA
43783532 ATTT
1 ATTT
43783536 TGCTTATTCT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
18 7 0.35
19 13 0.65
ACGTcount: A:0.34, C:0.17, G:0.00, T:0.49
Consensus pattern (18 bp):
ATTTCAATTTCACACTAA
Found at i:43785866 original size:25 final size:26
Alignment explanation
Indices: 43785838--43785914 Score: 70
Period size: 25 Copynumber: 3.0 Consensus size: 26
43785828 ATAAGCATAT
*
43785838 CGATATATGGCTCTTC-GGAGCTTTC
1 CGATATATGGCTCTTCAGGAGCTTCC
* * *
43785863 CGATAAAAGGCTCTTTCATGAGCTTCC
1 CGATATATGGCTC-TTCAGGAGCTTCC
*
43785890 CGAT-TAATGGCT-TTCTGGAGCTTCC
1 CGATAT-ATGGCTCTTCAGGAGCTTCC
43785915 TATTGGATCG
Statistics
Matches: 41, Mismatches: 8, Indels: 6
0.75 0.15 0.11
Matches are distributed among these distances:
25 22 0.54
26 3 0.07
27 16 0.39
ACGTcount: A:0.19, C:0.25, G:0.22, T:0.34
Consensus pattern (26 bp):
CGATATATGGCTCTTCAGGAGCTTCC
Found at i:43785979 original size:25 final size:25
Alignment explanation
Indices: 43785951--43785998 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
43785941 ATTGGCTCGT
*
43785951 ATGAGCTTCCCGTTACATGGCTCAC
1 ATGAGCTTCCCGGTACATGGCTCAC
*
43785976 ATGAGCTTCCCGGTATATGGCTC
1 ATGAGCTTCCCGGTACATGGCTC
43785999 GAGAGAGAGC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.19, C:0.29, G:0.23, T:0.29
Consensus pattern (25 bp):
ATGAGCTTCCCGGTACATGGCTCAC
Found at i:43786012 original size:27 final size:25
Alignment explanation
Indices: 43785953--43786012 Score: 66
Period size: 25 Copynumber: 2.3 Consensus size: 25
43785943 TGGCTCGTAT
* *
43785953 GAGCTTCCCGTTACATGGCTCACAT
1 GAGCTTCCCGGTACATGGCTCACAA
* *
43785978 GAGCTTCCCGGTATATGGCTCGAGAGA
1 GAGCTTCCCGGTACATGGCTC-ACA-A
43786005 GAGCTTCC
1 GAGCTTCC
43786013 TGTTTATGTG
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
25 19 0.66
26 2 0.07
27 8 0.28
ACGTcount: A:0.20, C:0.28, G:0.27, T:0.25
Consensus pattern (25 bp):
GAGCTTCCCGGTACATGGCTCACAA
Found at i:43789735 original size:26 final size:26
Alignment explanation
Indices: 43789704--43789772 Score: 111
Period size: 26 Copynumber: 2.7 Consensus size: 26
43789694 CATTTCGACC
43789704 CACAGCTCGTGTGAGCAGACCCATTT
1 CACAGCTCGTGTGAGCAGACCCATTT
* *
43789730 CACAGCTCGTGTGAGCATACTCATTT
1 CACAGCTCGTGTGAGCAGACCCATTT
*
43789756 CACAACTCGTGTGAGCA
1 CACAGCTCGTGTGAGCA
43789773 ATGATGTAAA
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 40 1.00
ACGTcount: A:0.25, C:0.29, G:0.22, T:0.25
Consensus pattern (26 bp):
CACAGCTCGTGTGAGCAGACCCATTT
Found at i:43796518 original size:42 final size:42
Alignment explanation
Indices: 43796371--43796526 Score: 128
Period size: 42 Copynumber: 3.7 Consensus size: 42
43796361 TGTGTTATTG
* *
43796371 TGTAAGACCACGTCTGGGA-CGTTGGCATCGAT-TTGAGATTTA
1 TGTAAGACCACGTCTGGGATAGTTGGCATCGATATT--GATTCA
* * * * *
43796413 TGTATAAGACCATGTCTGGGACA-TCGGCAT-TATATTTGATTTCG
1 TG--TAAGACCACGTCTGGGATAGTTGGCATCGATA-TTGA-TTCA
43796457 TGTAAGACC-CTGTCTGGGATAG-TGGCATCGATATTGATTACA
1 TGTAAGACCAC-GTCTGGGATAGTTGGCATCGATATTGATT-CA
43796499 TGTAAGACCACGTCTGGGAT-GTTGGCAT
1 TGTAAGACCACGTCTGGGATAGTTGGCAT
43796527 TGTACGAGTT
Statistics
Matches: 91, Mismatches: 11, Indels: 24
0.72 0.09 0.19
Matches are distributed among these distances:
41 3 0.03
42 52 0.57
43 8 0.09
44 26 0.29
45 2 0.02
ACGTcount: A:0.24, C:0.17, G:0.27, T:0.32
Consensus pattern (42 bp):
TGTAAGACCACGTCTGGGATAGTTGGCATCGATATTGATTCA
Found at i:43796869 original size:17 final size:18
Alignment explanation
Indices: 43796825--43796869 Score: 51
Period size: 17 Copynumber: 2.6 Consensus size: 18
43796815 TATGAAATTT
43796825 TGATATGAAATGTGAGTA
1 TGATATGAAATGTGAGTA
*
43796843 TGAT-TAAAATGATGA-TA
1 TGATATGAAATG-TGAGTA
43796860 T-ATATGAAAT
1 TGATATGAAAT
43796870 ATATGATAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 5
0.77 0.07 0.17
Matches are distributed among these distances:
16 2 0.09
17 14 0.61
18 7 0.30
ACGTcount: A:0.44, C:0.00, G:0.20, T:0.36
Consensus pattern (18 bp):
TGATATGAAATGTGAGTA
Found at i:43799050 original size:14 final size:14
Alignment explanation
Indices: 43799031--43799058 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
43799021 ACAAAGGAAA
43799031 ATCCCGCTTAAGTG
1 ATCCCGCTTAAGTG
43799045 ATCCCGCTTAAGTG
1 ATCCCGCTTAAGTG
43799059 TAAGGACCAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.21, C:0.29, G:0.21, T:0.29
Consensus pattern (14 bp):
ATCCCGCTTAAGTG
Found at i:43804775 original size:23 final size:23
Alignment explanation
Indices: 43804722--43804776 Score: 83
Period size: 23 Copynumber: 2.4 Consensus size: 23
43804712 AAATTTGAAG
* * *
43804722 TATTTAGAATTATTTAGTGATAA
1 TATTTAGGATTATTTACTAATAA
43804745 TATTTAGGATTATTTACTAATAA
1 TATTTAGGATTATTTACTAATAA
43804768 TATTTAGGA
1 TATTTAGGA
43804777 AAATTCTAGC
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 29 1.00
ACGTcount: A:0.38, C:0.02, G:0.13, T:0.47
Consensus pattern (23 bp):
TATTTAGGATTATTTACTAATAA
Found at i:43808019 original size:23 final size:23
Alignment explanation
Indices: 43807993--43808042 Score: 100
Period size: 23 Copynumber: 2.2 Consensus size: 23
43807983 ACATTTTTAT
43807993 ATTTACATTTTTTTGAACAATAC
1 ATTTACATTTTTTTGAACAATAC
43808016 ATTTACATTTTTTTGAACAATAC
1 ATTTACATTTTTTTGAACAATAC
43808039 ATTT
1 ATTT
43808043 TTAAATAATT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 27 1.00
ACGTcount: A:0.34, C:0.12, G:0.04, T:0.50
Consensus pattern (23 bp):
ATTTACATTTTTTTGAACAATAC
Found at i:43808792 original size:19 final size:19
Alignment explanation
Indices: 43808747--43808794 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 19
43808737 TATGCTTCTT
*
43808747 ATAATATTTAAATTTTTTAA
1 ATAAT-TTTAAATATTTTAA
*
43808767 TTAAATTTTAAATATTTTAA
1 AT-AATTTTAAATATTTTAA
43808787 ATAATTTT
1 ATAATTTT
43808795 CTATATTTAA
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
19 6 0.25
20 15 0.62
21 3 0.12
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (19 bp):
ATAATTTTAAATATTTTAA
Found at i:43810557 original size:20 final size:20
Alignment explanation
Indices: 43810485--43810562 Score: 50
Period size: 20 Copynumber: 3.7 Consensus size: 20
43810475 AAAATAAATA
43810485 AATTTTTTAAAATATAAATTTTAG
1 AATTTTTTAAAAT-T--ATTTT-G
* *
43810509 ATTTTTTTATAAA-TATTTTA
1 AATTTTTTA-AAATTATTTTG
***
43810529 AAAAATTTAAAATTATTTTG
1 AATTTTTTAAAATTATTTTG
*
43810549 AATTTTTTATAATT
1 AATTTTTTAAAATT
43810563 TTTGTTAAGA
Statistics
Matches: 41, Mismatches: 11, Indels: 8
0.68 0.18 0.13
Matches are distributed among these distances:
19 3 0.07
20 21 0.51
21 5 0.12
23 1 0.02
24 8 0.20
25 3 0.07
ACGTcount: A:0.42, C:0.00, G:0.03, T:0.55
Consensus pattern (20 bp):
AATTTTTTAAAATTATTTTG
Found at i:43822257 original size:13 final size:13
Alignment explanation
Indices: 43822239--43822265 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
43822229 AAAAATTTGG
43822239 ACATAACTAACTA
1 ACATAACTAACTA
43822252 ACATAACTAACTA
1 ACATAACTAACTA
43822265 A
1 A
43822266 AAATATGAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.56, C:0.22, G:0.00, T:0.22
Consensus pattern (13 bp):
ACATAACTAACTA
Found at i:43822298 original size:18 final size:17
Alignment explanation
Indices: 43822277--43822312 Score: 54
Period size: 18 Copynumber: 2.1 Consensus size: 17
43822267 AATATGAATT
*
43822277 TAAAGTAAAATAAATAAA
1 TAAAATAAAATAAA-AAA
43822295 TAAAATAAAATAAAAAA
1 TAAAATAAAATAAAAAA
43822312 T
1 T
43822313 TGTTAACTCA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 4 0.24
18 13 0.76
ACGTcount: A:0.75, C:0.00, G:0.03, T:0.22
Consensus pattern (17 bp):
TAAAATAAAATAAAAAA
Found at i:43824287 original size:17 final size:19
Alignment explanation
Indices: 43824265--43824305 Score: 59
Period size: 19 Copynumber: 2.3 Consensus size: 19
43824255 GGGATGTGGA
43824265 AATTTTT-CTAT-TACTTC
1 AATTTTTACTATCTACTTC
*
43824282 AATTTTTACTGTCTACTTC
1 AATTTTTACTATCTACTTC
43824301 AATTT
1 AATTT
43824306 CTCGCTGTGA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 7 0.33
18 3 0.14
19 11 0.52
ACGTcount: A:0.24, C:0.17, G:0.02, T:0.56
Consensus pattern (19 bp):
AATTTTTACTATCTACTTC
Found at i:43830133 original size:24 final size:24
Alignment explanation
Indices: 43830096--43830168 Score: 110
Period size: 24 Copynumber: 3.0 Consensus size: 24
43830086 GGTAAGAAAT
43830096 TTTCCACAGCTCCTCTCTTCACCC
1 TTTCCACAGCTCCTCTCTTCACCC
* * *
43830120 TTTCCACGGTTCCTCTCTTCACAC
1 TTTCCACAGCTCCTCTCTTCACCC
*
43830144 TTTCCACAGCTCCTCTATTCACCC
1 TTTCCACAGCTCCTCTCTTCACCC
43830168 T
1 T
43830169 ATCAATTGCA
Statistics
Matches: 42, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 42 1.00
ACGTcount: A:0.14, C:0.45, G:0.05, T:0.36
Consensus pattern (24 bp):
TTTCCACAGCTCCTCTCTTCACCC
Found at i:43834768 original size:20 final size:20
Alignment explanation
Indices: 43834743--43834784 Score: 84
Period size: 20 Copynumber: 2.1 Consensus size: 20
43834733 TACTATGTGG
43834743 TGTACTACTAATTATGTATT
1 TGTACTACTAATTATGTATT
43834763 TGTACTACTAATTATGTATT
1 TGTACTACTAATTATGTATT
43834783 TG
1 TG
43834785 GATAATATTA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.29, C:0.10, G:0.12, T:0.50
Consensus pattern (20 bp):
TGTACTACTAATTATGTATT
Found at i:43835135 original size:34 final size:35
Alignment explanation
Indices: 43835076--43835142 Score: 91
Period size: 34 Copynumber: 1.9 Consensus size: 35
43835066 CAAACACCAG
* * *
43835076 AAAATATTTTCCAGTAAGTCATTTTACAGAAAAGT
1 AAAACATTTTCCAGAAAATCATTTTACAGAAAAGT
*
43835111 AAAACATTTTCCA-AAAATCATTTTACGGAAAA
1 AAAACATTTTCCAGAAAATCATTTTACAGAAAA
43835143 CATTTTACTG
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
34 16 0.57
35 12 0.43
ACGTcount: A:0.46, C:0.13, G:0.09, T:0.31
Consensus pattern (35 bp):
AAAACATTTTCCAGAAAATCATTTTACAGAAAAGT
Found at i:43835745 original size:14 final size:15
Alignment explanation
Indices: 43835721--43835752 Score: 57
Period size: 14 Copynumber: 2.2 Consensus size: 15
43835711 GTAAAAAAGT
43835721 TAAATTTTTATAATA
1 TAAATTTTTATAATA
43835736 TAAA-TTTTATAATA
1 TAAATTTTTATAATA
43835750 TAA
1 TAA
43835753 TAAAAATTTC
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 13 0.76
15 4 0.24
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (15 bp):
TAAATTTTTATAATA
Found at i:43836612 original size:13 final size:13
Alignment explanation
Indices: 43836589--43836624 Score: 56
Period size: 13 Copynumber: 2.8 Consensus size: 13
43836579 ACACACAAAC
43836589 AAAAA-AAAAAAA
1 AAAAAGAAAAAAA
*
43836601 AAGAAGAAAAAAA
1 AAAAAGAAAAAAA
43836614 AAAAAGAAAAA
1 AAAAAGAAAAA
43836625 GAAGAAACTA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
12 4 0.19
13 17 0.81
ACGTcount: A:0.92, C:0.00, G:0.08, T:0.00
Consensus pattern (13 bp):
AAAAAGAAAAAAA
Found at i:43836612 original size:16 final size:16
Alignment explanation
Indices: 43836591--43836621 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
43836581 ACACAAACAA
43836591 AAAAAAAAAAAAGAAG
1 AAAAAAAAAAAAGAAG
43836607 AAAAAAAAAAAAGAA
1 AAAAAAAAAAAAGAA
43836622 AAAGAAGAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.90, C:0.00, G:0.10, T:0.00
Consensus pattern (16 bp):
AAAAAAAAAAAAGAAG
Found at i:43836613 original size:19 final size:19
Alignment explanation
Indices: 43836589--43836627 Score: 62
Period size: 18 Copynumber: 2.1 Consensus size: 19
43836579 ACACACAAAC
*
43836589 AAAAAAAAAAAA-AAGAAG
1 AAAAAAAAAAAAGAAAAAG
43836607 AAAAAAAAAAAAGAAAAAG
1 AAAAAAAAAAAAGAAAAAG
43836626 AA
1 AA
43836628 GAAACTATTG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 12 0.63
19 7 0.37
ACGTcount: A:0.90, C:0.00, G:0.10, T:0.00
Consensus pattern (19 bp):
AAAAAAAAAAAAGAAAAAG
Found at i:43836617 original size:22 final size:22
Alignment explanation
Indices: 43836589--43836631 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
43836579 ACACACAAAC
43836589 AAAAAAAAAAAAAAGAAGAAAA
1 AAAAAAAAAAAAAAGAAGAAAA
*
43836611 AAAAAAAAGAAAAAGAAGAAA
1 AAAAAAAAAAAAAAGAAGAAA
43836632 CTATTGTGCA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.88, C:0.00, G:0.12, T:0.00
Consensus pattern (22 bp):
AAAAAAAAAAAAAAGAAGAAAA
Found at i:43858211 original size:40 final size:40
Alignment explanation
Indices: 43858166--43858267 Score: 123
Period size: 40 Copynumber: 2.5 Consensus size: 40
43858156 CAATACCGGT
* *
43858166 AGCTTGTCTACATTGCTAGCAGTTTATTTGCAATACTAGC
1 AGCTTGTCTACATTACTAGCAGTTTATCTGCAATACTAGC
* * * * * *
43858206 AGCTTGTCTGCATTATTGGCAGTTTATCTGCATTATTGGC
1 AGCTTGTCTACATTACTAGCAGTTTATCTGCAATACTAGC
*
43858246 AGCTTGTCTACATTACTGGCAG
1 AGCTTGTCTACATTACTAGCAG
43858268 CTTGTCTTCA
Statistics
Matches: 52, Mismatches: 10, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
40 52 1.00
ACGTcount: A:0.22, C:0.20, G:0.21, T:0.38
Consensus pattern (40 bp):
AGCTTGTCTACATTACTAGCAGTTTATCTGCAATACTAGC
Found at i:43858217 original size:20 final size:20
Alignment explanation
Indices: 43858166--43858274 Score: 101
Period size: 20 Copynumber: 5.5 Consensus size: 20
43858156 CAATACCGGT
* * *
43858166 AGCTTGTCTACATTGCTAGC
1 AGCTTGTCTGCATTACTGGC
* * * * *
43858186 AGTTTATTTGCAATACTAGC
1 AGCTTGTCTGCATTACTGGC
*
43858206 AGCTTGTCTGCATTATTGGC
1 AGCTTGTCTGCATTACTGGC
* * *
43858226 AGTTTATCTGCATTATTGGC
1 AGCTTGTCTGCATTACTGGC
*
43858246 AGCTTGTCTACATTACTGGC
1 AGCTTGTCTGCATTACTGGC
43858266 AGCTTGTCT
1 AGCTTGTCT
43858275 TCAAATTTGG
Statistics
Matches: 71, Mismatches: 18, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
20 71 1.00
ACGTcount: A:0.20, C:0.20, G:0.20, T:0.39
Consensus pattern (20 bp):
AGCTTGTCTGCATTACTGGC
Found at i:43865138 original size:12 final size:12
Alignment explanation
Indices: 43865121--43865145 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
43865111 CTAGACAACT
43865121 TAGACATTTTTG
1 TAGACATTTTTG
43865133 TAGACATTTTTG
1 TAGACATTTTTG
43865145 T
1 T
43865146 TCTTATTTGG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.24, C:0.08, G:0.16, T:0.52
Consensus pattern (12 bp):
TAGACATTTTTG
Found at i:43876635 original size:42 final size:42
Alignment explanation
Indices: 43876576--43876659 Score: 150
Period size: 42 Copynumber: 2.0 Consensus size: 42
43876566 CAGTTAGTGA
*
43876576 AATATACAATAATTTACATAAAATTAGAGGTCAATCCAAATT
1 AATATACAATAATTTACATAAAATTAAAGGTCAATCCAAATT
*
43876618 AATATACAATAATTTACATAAAATTAAAGGTTAATCCAAATT
1 AATATACAATAATTTACATAAAATTAAAGGTCAATCCAAATT
43876660 GTCAAGTTTT
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
42 40 1.00
ACGTcount: A:0.51, C:0.11, G:0.06, T:0.32
Consensus pattern (42 bp):
AATATACAATAATTTACATAAAATTAAAGGTCAATCCAAATT
Found at i:43894807 original size:18 final size:17
Alignment explanation
Indices: 43894784--43894840 Score: 53
Period size: 18 Copynumber: 3.2 Consensus size: 17
43894774 TAAAAATAAA
43894784 AATAACATTTTGAAATTG
1 AATAACATTTTGAAA-TG
43894802 AATAACGA-TTTGTAAATG
1 AATAAC-ATTTTG-AAATG
**
43894820 AATAATGTTTTGAAAATG
1 AATAACATTTTG-AAATG
43894838 AAT
1 AAT
43894841 GACACGATTT
Statistics
Matches: 33, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
18 29 0.88
19 4 0.12
ACGTcount: A:0.46, C:0.04, G:0.14, T:0.37
Consensus pattern (17 bp):
AATAACATTTTGAAATG
Found at i:43901580 original size:41 final size:42
Alignment explanation
Indices: 43901535--43901691 Score: 214
Period size: 41 Copynumber: 3.8 Consensus size: 42
43901525 TTGTATATAA
** * *
43901535 CACCGGCATAAAGCCTGCTAGGCACCAAGCTC-GATACATTT
1 CACCGGCATAAAGCCTGCTAGGCATAAAGCTCTGATATAATT
* *
43901576 CACCGGCACAAAGCCTGCTAGACATAAAG-TCTGATATAATT
1 CACCGGCATAAAGCCTGCTAGGCATAAAGCTCTGATATAATT
*
43901617 CACCGGCATAAAGCCTGCTAGGCATAAAGC-CTGACATAATT
1 CACCGGCATAAAGCCTGCTAGGCATAAAGCTCTGATATAATT
*
43901658 CACCGGCATAAAGTCTGCTAGGCATAAAGC-CTGA
1 CACCGGCATAAAGCCTGCTAGGCATAAAGCTCTGA
43901692 ACTTACAAAA
Statistics
Matches: 104, Mismatches: 10, Indels: 4
0.88 0.08 0.03
Matches are distributed among these distances:
40 2 0.02
41 102 0.98
ACGTcount: A:0.33, C:0.27, G:0.20, T:0.20
Consensus pattern (42 bp):
CACCGGCATAAAGCCTGCTAGGCATAAAGCTCTGATATAATT
Found at i:43902872 original size:16 final size:17
Alignment explanation
Indices: 43902851--43902882 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
43902841 AAATATGCAA
43902851 TCACATAA-TTCATATT
1 TCACATAACTTCATATT
43902867 TCACATAACTTCATAT
1 TCACATAACTTCATAT
43902883 CATCAATTCA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 8 0.53
17 7 0.47
ACGTcount: A:0.38, C:0.22, G:0.00, T:0.41
Consensus pattern (17 bp):
TCACATAACTTCATATT
Found at i:43903132 original size:41 final size:41
Alignment explanation
Indices: 43903044--43903198 Score: 127
Period size: 41 Copynumber: 3.7 Consensus size: 41
43903034 GGCTCGTACA
* ** * *
43903044 ATGCCAACGTCCCAGAC-GTGGTCTTACATGTAATCACATATG
1 ATGCCAATGTCCCAGACAG-GGTCTTACA-CAAATCAAATACG
* *
43903086 ATGCCACTGTCCCAGATAGGGTCTTACACAAATCAAATACG
1 ATGCCAATGTCCCAGACAGGGTCTTACACAAATCAAATACG
* * **
43903127 ATGCCAATGTCCCGGACATGGTCTTACACGTATACACAAGT-CG
1 ATGCCAATGTCCCAGACAGGGTCTTACACAAAT-CA-AA-TACG
*
43903170 ATGCCAACGTCCCAGAC-GTGGTCTTACAC
1 ATGCCAATGTCCCAGACAG-GGTCTTACAC
43903199 GAAAATACAT
Statistics
Matches: 92, Mismatches: 16, Indels: 9
0.79 0.14 0.08
Matches are distributed among these distances:
41 36 0.39
42 25 0.27
43 30 0.33
44 1 0.01
ACGTcount: A:0.29, C:0.28, G:0.19, T:0.23
Consensus pattern (41 bp):
ATGCCAATGTCCCAGACAGGGTCTTACACAAATCAAATACG
Found at i:43915623 original size:44 final size:44
Alignment explanation
Indices: 43915491--43916238 Score: 1117
Period size: 44 Copynumber: 17.0 Consensus size: 44
43915481 GTTGAAAGGC
*
43915491 AGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAATAA
1 AGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGAA
*** * *
43915535 AGCAGATCTTGTCTTCCCATACTGGTGGTGAAGTAGATCGAAGAA
1 AGCAGATCTTGTCTTCATGTATTGG-CGTGAAGTAGATCGAAGAA
43915580 AGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGAA
1 AGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGAA
* *
43915624 AGCAAATCTTGTCTTCATGTATTGGCATGAAGTAGATCGAAGAA
1 AGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGAA
* * * * *
43915668 AGTAGGTCTTATCTTCATGTATTGGCGTGAAATAGATTGAAGAA
1 AGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGAA
* * *
43915712 AGAAGATATTGTCTTCATGTATTGGCGTGAAGTAGATCCAAGAA
1 AGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGAA
43915756 AGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGAA
1 AGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGAA
*
43915800 AGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCCAAGAA
1 AGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGAA
* * *
43915844 AGCAGATCTTGTCTTCATGTATTGACGTGAAGTAGATCAAAGAT
1 AGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGAA
*
43915888 AGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCCAAGAA
1 AGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGAA
**
43915932 AGCAGATAC-TGTCTTCATGTATTGGCACGAAGTAGATCGAAGAA
1 AGCAGAT-CTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGAA
*
43915976 AGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGAT
1 AGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGAA
* * *
43916020 AGCAAATCTTGTCTTCGTGTATTGGCGTGAAGTAGATCCAAGAA
1 AGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGAA
*
43916064 AGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCCAAGAA
1 AGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGAA
*
43916108 AGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGAT
1 AGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGAA
* *
43916152 AGCAGATCTTATCTTCATGTATTGGCGTGAAGTAGATCAAAGATA
1 AGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGA-A
* * *
43916197 A-CAGGTCTTGTCTTCCCATATATTGGC--GAAATAGATCGAAGA
1 AGCAGATCTTGTCTT--CATGTATTGGCGTGAAGTAGATCGAAGA
43916239 TACAAGTCTT
Statistics
Matches: 639, Mismatches: 59, Indels: 12
0.90 0.08 0.02
Matches are distributed among these distances:
43 1 0.00
44 588 0.92
45 40 0.06
46 10 0.02
ACGTcount: A:0.31, C:0.14, G:0.25, T:0.30
Consensus pattern (44 bp):
AGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGAA
Found at i:43916276 original size:44 final size:44
Alignment explanation
Indices: 43916228--43916366 Score: 120
Period size: 44 Copynumber: 3.2 Consensus size: 44
43916218 ATTGGCGAAA
*
43916228 TAGATCGAAGATACA-AGTCTTATCTCCCTGAAGTTGTAGTGGAG
1 TAGATCGAAGA-ACACAGTCTTATCTCCCTGAAGTTGCAGTGGAG
* * * * * * *
43916272 TAGATAGAAGAAAATAATCCTATCTCCTTGAAGTTGCAATGGAG
1 TAGATCGAAGAACACAGTCTTATCTCCCTGAAGTTGCAGTGGAG
* * * * * *
43916316 TAGGT-TAAGACCACAGATCTCATCTCTCTGAAGTTGCAGTAGAG
1 TAGATCGAAGAACACAG-TCTTATCTCCCTGAAGTTGCAGTGGAG
43916360 TAGATCG
1 TAGATCG
43916367 CATCAAGATT
Statistics
Matches: 71, Mismatches: 21, Indels: 5
0.73 0.22 0.05
Matches are distributed among these distances:
43 8 0.11
44 63 0.89
ACGTcount: A:0.32, C:0.17, G:0.23, T:0.28
Consensus pattern (44 bp):
TAGATCGAAGAACACAGTCTTATCTCCCTGAAGTTGCAGTGGAG
Found at i:43917803 original size:24 final size:21
Alignment explanation
Indices: 43917757--43917798 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
43917747 ATTATTTCCA
*
43917757 TTACTATTATTATTATATTAT
1 TTACTATCATTATTATATTAT
43917778 TTACTATCATTATTATTATTA
1 TTACTATCATTATTA-TATTA
43917799 CATTTTCTAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 14 0.74
22 5 0.26
ACGTcount: A:0.33, C:0.07, G:0.00, T:0.60
Consensus pattern (21 bp):
TTACTATCATTATTATATTAT
Found at i:43925098 original size:23 final size:24
Alignment explanation
Indices: 43925067--43925111 Score: 65
Period size: 23 Copynumber: 1.9 Consensus size: 24
43925057 ATATCCCCAC
*
43925067 ATGGAGTGTAG-GGTTGGATGGAG
1 ATGGAGTGTAGAGGCTGGATGGAG
*
43925090 ATGGTGTGTAGAGGCTGGATGG
1 ATGGAGTGTAGAGGCTGGATGG
43925112 GTAGGATTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
23 10 0.53
24 9 0.47
ACGTcount: A:0.20, C:0.02, G:0.51, T:0.27
Consensus pattern (24 bp):
ATGGAGTGTAGAGGCTGGATGGAG
Found at i:43928629 original size:42 final size:42
Alignment explanation
Indices: 43928538--43928635 Score: 124
Period size: 42 Copynumber: 2.3 Consensus size: 42
43928528 ATTAATTGAT
*
43928538 ATTTGATTTGCATGTTAAGCATGCCGACTATGATAAACTAAG
1 ATTTGATTTGCATGTTAAGCATCCCGACTATGATAAACTAAG
* * * * * *
43928580 ATCTGATTTGCATGTTAAGCATCCCGATTATGTTGATCTTAG
1 ATTTGATTTGCATGTTAAGCATCCCGACTATGATAAACTAAG
*
43928622 ATTTGATTCGCATG
1 ATTTGATTTGCATG
43928636 ATAACTTTAC
Statistics
Matches: 47, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
42 47 1.00
ACGTcount: A:0.28, C:0.15, G:0.19, T:0.38
Consensus pattern (42 bp):
ATTTGATTTGCATGTTAAGCATCCCGACTATGATAAACTAAG
Found at i:43929595 original size:56 final size:56
Alignment explanation
Indices: 43929529--43929645 Score: 225
Period size: 56 Copynumber: 2.1 Consensus size: 56
43929519 AAGAAATTCA
*
43929529 AAAGGTTTTACCTTAGTTTTTCTCAAGCAAAATAACTCACTGATTTTGATTTTATT
1 AAAGGTTTTACCTTAGTTTTTCTCAAGCAAAACAACTCACTGATTTTGATTTTATT
43929585 AAAGGTTTTACCTTAGTTTTTCTCAAGCAAAACAACTCACTGATTTTGATTTTATT
1 AAAGGTTTTACCTTAGTTTTTCTCAAGCAAAACAACTCACTGATTTTGATTTTATT
43929641 AAAGG
1 AAAGG
43929646 AGATAACGAC
Statistics
Matches: 60, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 60 1.00
ACGTcount: A:0.32, C:0.15, G:0.12, T:0.42
Consensus pattern (56 bp):
AAAGGTTTTACCTTAGTTTTTCTCAAGCAAAACAACTCACTGATTTTGATTTTATT
Found at i:43934643 original size:51 final size:51
Alignment explanation
Indices: 43934581--43934680 Score: 139
Period size: 51 Copynumber: 2.0 Consensus size: 51
43934571 CTCAATTTCC
43934581 TCTCAAATTGCTCGCAATTTCCT-TCCAAATTTCTCTCAAATCCATATTTAA
1 TCTCAAATTGCTCGCAATTTCCTCT-CAAATTTCTCTCAAATCCATATTTAA
* * * * *
43934632 TCTCAATTTGCTCTCAATTTCCTCTTAAATTTCTCTTAAATCCTTATTT
1 TCTCAAATTGCTCGCAATTTCCTCTCAAATTTCTCTCAAATCCATATTT
43934681 TTAATTATTT
Statistics
Matches: 43, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
51 42 0.98
52 1 0.02
ACGTcount: A:0.26, C:0.26, G:0.03, T:0.45
Consensus pattern (51 bp):
TCTCAAATTGCTCGCAATTTCCTCTCAAATTTCTCTCAAATCCATATTTAA
Found at i:43937914 original size:24 final size:24
Alignment explanation
Indices: 43937842--43937916 Score: 78
Period size: 24 Copynumber: 3.1 Consensus size: 24
43937832 GTAATATATG
*
43937842 TGTGAACTATCTTTGCAAAGAGTA
1 TGTGAACTATCTTTGCAAAGAATA
* ** * ** *
43937866 TGCGAACTATCAATGTATTGTATA
1 TGTGAACTATCTTTGCAAAGAATA
43937890 TGTGAACTATCTTTGCAAAGAATA
1 TGTGAACTATCTTTGCAAAGAATA
43937914 TGT
1 TGT
43937917 AAATTGTGAT
Statistics
Matches: 36, Mismatches: 15, Indels: 0
0.71 0.29 0.00
Matches are distributed among these distances:
24 36 1.00
ACGTcount: A:0.33, C:0.12, G:0.19, T:0.36
Consensus pattern (24 bp):
TGTGAACTATCTTTGCAAAGAATA
Found at i:43937931 original size:48 final size:48
Alignment explanation
Indices: 43937803--43937936 Score: 169
Period size: 48 Copynumber: 2.8 Consensus size: 48
43937793 ATGTGAGAGT
* * * *
43937803 TCTTTTCAAAGAATATGCAAACTGTCAATGTAATATATGTGTGAACTA
1 TCTTTGCAAAGAATATGCAAACTGTCAATGTATTGTATATGTGAACTA
* * *
43937851 TCTTTGCAAAGAGTATGCGAACTATCAATGTATTGTATATGTGAACTA
1 TCTTTGCAAAGAATATGCAAACTGTCAATGTATTGTATATGTGAACTA
* * * *
43937899 TCTTTGCAAAGAATATGTAAATTGTGATTGTATTGTAT
1 TCTTTGCAAAGAATATGCAAACTGTCAATGTATTGTAT
43937937 GCATGAATTG
Statistics
Matches: 72, Mismatches: 14, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
48 72 1.00
ACGTcount: A:0.34, C:0.10, G:0.17, T:0.38
Consensus pattern (48 bp):
TCTTTGCAAAGAATATGCAAACTGTCAATGTATTGTATATGTGAACTA
Done.