Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr09 ID=Chr09-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 70713020
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 1142373 characters in sequence are not A, C, G, or T
File 144 of 226
Found at i:47817196 original size:217 final size:215
Alignment explanation
Indices: 47816820--47817259 Score: 623
Period size: 217 Copynumber: 2.0 Consensus size: 215
47816810 GAGATAAGAT
* * * *
47816820 TTATTTTAATCCACTCCACTGCAACTTTAAGGAGATAGGACTACTATCTTCAATCTGCTCCACTA
1 TTATTTTAATCCACTCCACTGCAACCTCAAGGAGATAGGACTACTAGCTTCAATCTACTCCACTA
* * ** * *
47816885 CTGCTTAGGGAGATAAGATCTGCCATCTTCGATCTGCTCCACTATTGCTTAGGGAGATAAGATCT
66 C-GCTAAGGGAGATAAAATCCACCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCC
* *
47816950 GTTTCTTCGTTCTGCTCCGCTGCAACCTCACGGAGATAAGACCTGATGCGATCTACTCTACTGCA
130 GTTTCTTCGGTCTGCTCCGCTGCAACCTCAAGGAGATAAGACCTGATGCGATCTACTCTACTGCA
47817015 ACTTCAGAGAGATAAGATCTG
195 ACTTCAGAGAGATAAGATCTG
* * * *
47817036 TTATTTTAATCCACTCCACTGCAACCTC-AGAGAGATAGGATTAGTGGCTTCAATCTACTCTACT
1 TTATTTTAATCCACTCCACTGCAACCTCAAG-GAGATAGGACTACTAGCTTCAATCTACTCCAC-
47817100 GTAAC-CTAAGGGAGATAAAATCCACCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGA
64 -T-ACGCTAAGGGAGATAAAATCCACCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGA
* *
47817164 TCCGTTTCTTCGGTCTGCTCCGTTGTAACCTCAAGGAGATAAGACCTGATGCGATCTACTCTACT
127 TCCGTTTCTTCGGTCTGCTCCGCTGCAACCTCAAGGAGATAAGACCTGATGCGATCTACTCTACT
* * *
47817229 TCAACTTTAGAGATATAAGATCTG
192 GCAACTTCAGAGAGATAAGATCTG
*
47817253 TAATTTT
1 TTATTTT
47817260 TTTTCAACCT
Statistics
Matches: 198, Mismatches: 22, Indels: 7
0.87 0.10 0.03
Matches are distributed among these distances:
215 2 0.01
216 52 0.26
217 141 0.71
218 1 0.01
219 2 0.01
ACGTcount: A:0.27, C:0.24, G:0.18, T:0.31
Consensus pattern (215 bp):
TTATTTTAATCCACTCCACTGCAACCTCAAGGAGATAGGACTACTAGCTTCAATCTACTCCACTA
CGCTAAGGGAGATAAAATCCACCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCCG
TTTCTTCGGTCTGCTCCGCTGCAACCTCAAGGAGATAAGACCTGATGCGATCTACTCTACTGCAA
CTTCAGAGAGATAAGATCTG
Found at i:47817410 original size:132 final size:131
Alignment explanation
Indices: 47817262--47817563 Score: 333
Period size: 132 Copynumber: 2.3 Consensus size: 131
47817252 GTAATTTTTT
* **** * *
47817262 TTCAACCTACTCCACTGCTG-CTCAGGGAGACAAGG-CTGGGGTCTTCGATCTGCTCCACTACTA
1 TTCAACCTATTCCACTGCTGAC-CAGGGAGA-AAGGACTACAATCTTCAATCTACTCCACTACTA
** * * * *
47817325 CTTAGGGAGATAAGATTTGT-AATTTTTCAATCTATTCCACTGCTGACCAGGGAGATA-GAATTC
64 CCCAGGGAGAT-AGAATTCTCAA-TCTTCAACCTATTCCACTGCTGACCAGGGAGATAGGAATT-
47817388 ACAATC
126 ACAATC
* * *
47817394 TTCAACCTATTCCACTGCTGACCAGGGAGATAGGACCTACAATCTTCAATCTATTCCACTATTAC
1 TTCAACCTATTCCACTGCTGACCAGGGAGAAAGGA-CTACAATCTTCAATCTACTCCACTACTAC
*
47817459 CCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACCAGGGAGATAGGACTTACAA
65 CCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACCAGGGAGATAGGAATTACAA
47817524 TC
130 TC
* ** *
47817526 CTCAACCTATTCCACTGCTTTCCAGGGAGATAGGACTA
1 TTCAACCTATTCCACTGCTGACCAGGGAGAAAGGACTA
47817564 GTATCTTCGA
Statistics
Matches: 145, Mismatches: 20, Indels: 11
0.82 0.11 0.06
Matches are distributed among these distances:
131 6 0.04
132 103 0.71
133 36 0.25
ACGTcount: A:0.28, C:0.26, G:0.18, T:0.27
Consensus pattern (131 bp):
TTCAACCTATTCCACTGCTGACCAGGGAGAAAGGACTACAATCTTCAATCTACTCCACTACTACC
CAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACCAGGGAGATAGGAATTACAAT
C
Found at i:47817442 original size:88 final size:88
Alignment explanation
Indices: 47817350--47817558 Score: 339
Period size: 88 Copynumber: 2.4 Consensus size: 88
47817340 TTTGTAATTT
*
47817350 TTCAATCTATTCCACTGCTGACCAGGGAGATAGAATTCACAATCTTCAACCTATTCCACTGCTGA
1 TTCAATCTATTCCACTGCTTACCAGGGAGATAGAATTCACAATCTTCAACCTATTCCACTGCTGA
47817415 CCAGGGAGATAGGACCTACAATC
66 CCAGGGAGATAGGACCTACAATC
* *
47817438 TTCAATCTATTCCACT-ATTACCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTG
1 TTCAATCTATTCCACTGCTTA-CCAGGGAGATAGAATTCACAATCTTCAACCTATTCCACTGCTG
*
47817502 ACCAGGGAGATAGGACTTACAATC
65 ACCAGGGAGATAGGACCTACAATC
* * *
47817526 CTCAACCTATTCCACTGCTTTCCAGGGAGATAG
1 TTCAATCTATTCCACTGCTTACCAGGGAGATAG
47817559 GACTAGTATC
Statistics
Matches: 111, Mismatches: 8, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
87 2 0.02
88 107 0.96
89 2 0.02
ACGTcount: A:0.30, C:0.27, G:0.16, T:0.27
Consensus pattern (88 bp):
TTCAATCTATTCCACTGCTTACCAGGGAGATAGAATTCACAATCTTCAACCTATTCCACTGCTGA
CCAGGGAGATAGGACCTACAATC
Found at i:47817559 original size:44 final size:45
Alignment explanation
Indices: 47817350--47817562 Score: 283
Period size: 44 Copynumber: 4.8 Consensus size: 45
47817340 TTTGTAATTT
* *
47817350 TTCAATCTATTCCACTGCTGACCAGGGAGATA-GAATTCACAATC
1 TTCAACCTATTCCACTGCTGACCAGGGAGATAGGACTTCACAATC
*
47817394 TTCAACCTATTCCACTGCTGACCAGGGAGATAGGACCT-ACAATC
1 TTCAACCTATTCCACTGCTGACCAGGGAGATAGGACTTCACAATC
* * * * *
47817438 TTCAATCTATTCCACT-ATTACCCAGGGAGATA-GAATTCTCAATC
1 TTCAACCTATTCCACTGCTGA-CCAGGGAGATAGGACTTCACAATC
47817482 TTCAACCTATTCCACTGCTGACCAGGGAGATAGGACTT-ACAATC
1 TTCAACCTATTCCACTGCTGACCAGGGAGATAGGACTTCACAATC
* **
47817526 CTCAACCTATTCCACTGCTTTCCAGGGAGATAGGACT
1 TTCAACCTATTCCACTGCTGACCAGGGAGATAGGACT
47817563 AGTATCTTCG
Statistics
Matches: 147, Mismatches: 17, Indels: 10
0.84 0.10 0.06
Matches are distributed among these distances:
43 5 0.03
44 133 0.90
45 9 0.06
ACGTcount: A:0.30, C:0.27, G:0.16, T:0.27
Consensus pattern (45 bp):
TTCAACCTATTCCACTGCTGACCAGGGAGATAGGACTTCACAATC
Found at i:47817619 original size:88 final size:88
Alignment explanation
Indices: 47817527--47817705 Score: 191
Period size: 88 Copynumber: 2.0 Consensus size: 88
47817517 CTTACAATCC
* *** *
47817527 TCAACCTATTCCACTGCTTTCCAGGGA-G-ATAGGACTAGTATCTTCGATCTGCTTCGCCGTTAG
1 TCAACCTACTCCACTGCAACCCAGGGAGGCA-AGG-CTAGTATCTTCGATCTGCTTCGCCGTCAG
** * *
47817590 TATGGGAAGGCAAGATCTGTTCTTT
64 TACAGGAAGGCAAGATCTGCTCTCT
* * * * * *
47817615 TCAACCTGCTCCGCTGCAACCCAGGGAGGCAAGGCTGGTGTCTTCGATCTGCTTCGCTGTCAGTG
1 TCAACCTACTCCACTGCAACCCAGGGAGGCAAGGCTAGTATCTTCGATCTGCTTCGCCGTCAGTA
47817680 CAGGAAGGCAAGATCTGCTCTCT
66 CAGGAAGGCAAGATCTGCTCTCT
47817703 TCA
1 TCA
47817706 CTGATCTATT
Statistics
Matches: 74, Mismatches: 15, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
88 69 0.93
89 4 0.05
90 1 0.01
ACGTcount: A:0.20, C:0.26, G:0.25, T:0.28
Consensus pattern (88 bp):
TCAACCTACTCCACTGCAACCCAGGGAGGCAAGGCTAGTATCTTCGATCTGCTTCGCCGTCAGTA
CAGGAAGGCAAGATCTGCTCTCT
Found at i:47819022 original size:45 final size:46
Alignment explanation
Indices: 47818972--47819059 Score: 133
Period size: 46 Copynumber: 1.9 Consensus size: 46
47818962 TATTTTTTTA
* *
47818972 TTTTTT-GGACTCAAAGCGCCCTTTGCGGGTTTTCACTTTGGTGTT
1 TTTTTTAGGAATCAAAGCGCCCTTTGCGGGTTTTCACCTTGGTGTT
* *
47819017 TTTTTTAGGAATCAAGGCGCCCTTTGTGGGTTTTCACCTTGGT
1 TTTTTTAGGAATCAAAGCGCCCTTTGCGGGTTTTCACCTTGGT
47819060 CGCTTCTCCT
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
45 6 0.16
46 32 0.84
ACGTcount: A:0.12, C:0.19, G:0.25, T:0.43
Consensus pattern (46 bp):
TTTTTTAGGAATCAAAGCGCCCTTTGCGGGTTTTCACCTTGGTGTT
Found at i:47824102 original size:3 final size:3
Alignment explanation
Indices: 47824094--47824141 Score: 62
Period size: 3 Copynumber: 15.7 Consensus size: 3
47824084 ATGAAGAGCT
*
47824094 TAA TAA TAA TAA TAA TAA TAA TAA TGA -AA TATA TACA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA-A TA-A TAA TAA TAA
47824140 TA
1 TA
47824142 CAAAAAGGTT
Statistics
Matches: 40, Mismatches: 3, Indels: 4
0.85 0.06 0.09
Matches are distributed among these distances:
2 1 0.03
3 33 0.82
4 6 0.15
ACGTcount: A:0.62, C:0.02, G:0.02, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:47833739 original size:107 final size:107
Alignment explanation
Indices: 47833548--47833745 Score: 256
Period size: 107 Copynumber: 1.9 Consensus size: 107
47833538 TTGAGCTGGG
* * ** * * *
47833548 TGATCATTTAGCAGGTATTATGTACCGGTGATACAAATTGTAGCGATGGCTGAGATCCTGCATTT
1 TGATCATTTAACAGGTAATATGTACCGGTGATACAAACCGTAGCAATGGCTGAGATCCTACATTC
* *
47833613 GTTTCAGATTCTCTATAGCTTGTGTGCAACATTGTGAGTCGA
66 ATTGCAGATTCTCTATAGCTTGTGTGCAACATTGTGAGTCGA
*
47833655 TGATTATTTAACAGGTAATATGTACCGGTGATACAAACCGTTA-CAATGGCTTGAGATCCTACA-
1 TGATCATTTAACAGGTAATATGTACCGGTGATACAAACCG-TAGCAATGGC-TGAGATCCTACAT
* *
47833718 TCATTGCGGATTCTCTGTAGCTTGTGTG
64 TCATTGCAGATTCTCTATAGCTTGTGTG
47833746 AGCAGCATCG
Statistics
Matches: 77, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
107 64 0.83
108 13 0.17
ACGTcount: A:0.25, C:0.17, G:0.23, T:0.35
Consensus pattern (107 bp):
TGATCATTTAACAGGTAATATGTACCGGTGATACAAACCGTAGCAATGGCTGAGATCCTACATTC
ATTGCAGATTCTCTATAGCTTGTGTGCAACATTGTGAGTCGA
Found at i:47838167 original size:14 final size:14
Alignment explanation
Indices: 47838139--47838202 Score: 56
Period size: 14 Copynumber: 4.1 Consensus size: 14
47838129 AAATAAAGGG
47838139 AGAAACAAAAGAGAAA
1 AGAAA-AAAA-AGAAA
*
47838155 GGAAAAAAAAGAAA
1 AGAAAAAAAAGAAA
47838169 AGAAAAAAAAGTTAAA
1 AGAAAAAAAAG--AAA
47838185 AGAACATAAAAGAGAAA
1 AGAA-A-AAAA-AGAAA
47838202 A
1 A
47838203 AATAAATTGC
Statistics
Matches: 41, Mismatches: 2, Indels: 9
0.79 0.04 0.17
Matches are distributed among these distances:
14 15 0.37
15 4 0.10
16 11 0.27
17 5 0.12
18 4 0.10
19 2 0.05
ACGTcount: A:0.75, C:0.03, G:0.17, T:0.05
Consensus pattern (14 bp):
AGAAAAAAAAGAAA
Found at i:47842342 original size:15 final size:15
Alignment explanation
Indices: 47842322--47842355 Score: 59
Period size: 15 Copynumber: 2.3 Consensus size: 15
47842312 TAAAAATTTT
47842322 AAATAAATATTGTAA
1 AAATAAATATTGTAA
*
47842337 AAATAAATATTTTAA
1 AAATAAATATTGTAA
47842352 AAAT
1 AAAT
47842356 CTTAGTTTTG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.62, C:0.00, G:0.03, T:0.35
Consensus pattern (15 bp):
AAATAAATATTGTAA
Found at i:47846893 original size:26 final size:26
Alignment explanation
Indices: 47846858--47846921 Score: 92
Period size: 26 Copynumber: 2.5 Consensus size: 26
47846848 TCATACTATC
* *
47846858 CATTTTATATATTCAACATCATAGCT
1 CATTTCATATACTCAACATCATAGCT
*
47846884 CATTTCATATACTCAACATTATAGCT
1 CATTTCATATACTCAACATCATAGCT
*
47846910 TATTTCATATAC
1 CATTTCATATAC
47846922 GTACCTTTCC
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 34 1.00
ACGTcount: A:0.34, C:0.20, G:0.03, T:0.42
Consensus pattern (26 bp):
CATTTCATATACTCAACATCATAGCT
Found at i:47848873 original size:25 final size:25
Alignment explanation
Indices: 47848842--47848890 Score: 80
Period size: 25 Copynumber: 2.0 Consensus size: 25
47848832 GCACTTTCTC
*
47848842 GAGCCATATAATGGGAAGCTCATGT
1 GAGCCATATAACGGGAAGCTCATGT
*
47848867 GAGCCATGTAACGGGAAGCTCATG
1 GAGCCATATAACGGGAAGCTCATG
47848891 CGATCCAATA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.31, C:0.18, G:0.31, T:0.20
Consensus pattern (25 bp):
GAGCCATATAACGGGAAGCTCATGT
Found at i:47849035 original size:25 final size:26
Alignment explanation
Indices: 47848979--47849036 Score: 93
Period size: 26 Copynumber: 2.3 Consensus size: 26
47848969 CCTTATCAGA
47848979 AAGCTCACAAAGAGCCAATTAACGGG
1 AAGCTCACAAAGAGCCAATTAACGGG
47849005 AAGCTCACAAAGAGCC-A-TAATCGGG
1 AAGCTCACAAAGAGCCAATTAA-CGGG
47849030 AAGCTCA
1 AAGCTCA
47849037 TAAGATCTGT
Statistics
Matches: 31, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
24 3 0.10
25 12 0.39
26 16 0.52
ACGTcount: A:0.41, C:0.24, G:0.22, T:0.12
Consensus pattern (26 bp):
AAGCTCACAAAGAGCCAATTAACGGG
Found at i:47851418 original size:107 final size:107
Alignment explanation
Indices: 47851245--47851500 Score: 352
Period size: 107 Copynumber: 2.4 Consensus size: 107
47851235 ACGAGATTGT
* * * ** *
47851245 TCACACAAGCTGAT-GAGAATCCGCAACATATGCAAGATCTCAGCCATTTGAATGGACTATAACA
1 TCACACAAGCTG-TCGAGAATCCGCAACATATGTAGGATCTCAACCATCGGAACGGACTATAACA
* *
47851309 TCATAATAGAGTAGCCATTCTATTCACCAGTTCACGATGCTAC
65 TCATAATAGAGTAGCCATTCAATTCACCAATTCACGATGCTAC
* * **
47851352 TCACACAAGCTGTCGAGAATCCGCAACATATGTAGGATCTTAACCATCGGAACGGTCTATGTCAT
1 TCACACAAGCTGTCGAGAATCCGCAACATATGTAGGATCTCAACCATCGGAACGGACTATAACAT
*
47851417 CATAATAGAGTAGCCATTCAATTCACCAATTCACGATGCTGC
66 CATAATAGAGTAGCCATTCAATTCACCAATTCACGATGCTAC
* * *
47851459 TCATACAAGCTGTCGAGATTCCGCAACATATGTAGAATCTCA
1 TCACACAAGCTGTCGAGAATCCGCAACATATGTAGGATCTCA
47851501 GACATCGCGA
Statistics
Matches: 131, Mismatches: 17, Indels: 2
0.87 0.11 0.01
Matches are distributed among these distances:
106 1 0.01
107 130 0.99
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (107 bp):
TCACACAAGCTGTCGAGAATCCGCAACATATGTAGGATCTCAACCATCGGAACGGACTATAACAT
CATAATAGAGTAGCCATTCAATTCACCAATTCACGATGCTAC
Found at i:47855928 original size:14 final size:15
Alignment explanation
Indices: 47855894--47855938 Score: 58
Period size: 14 Copynumber: 3.1 Consensus size: 15
47855884 ATTAATCTTC
47855894 AATTATAATAAATAT
1 AATTATAATAAATAT
47855909 AA-TATAATAAATA-
1 AATTATAATAAATAT
*
47855922 AATTATAGTAAAATAT
1 AATTATAAT-AAATAT
47855938 A
1 A
47855939 CCTGATGATA
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
13 2 0.08
14 16 0.62
15 7 0.27
16 1 0.04
ACGTcount: A:0.62, C:0.00, G:0.02, T:0.36
Consensus pattern (15 bp):
AATTATAATAAATAT
Found at i:47859003 original size:16 final size:18
Alignment explanation
Indices: 47858982--47859015 Score: 54
Period size: 16 Copynumber: 2.0 Consensus size: 18
47858972 TACTATAGGG
47858982 ATTTTACT-TT-TATTTT
1 ATTTTACTGTTGTATTTT
47858998 ATTTTACTGTTGTATTTT
1 ATTTTACTGTTGTATTTT
47859016 TTTAAAATAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 8 0.50
17 2 0.12
18 6 0.38
ACGTcount: A:0.18, C:0.06, G:0.06, T:0.71
Consensus pattern (18 bp):
ATTTTACTGTTGTATTTT
Found at i:47862113 original size:26 final size:26
Alignment explanation
Indices: 47862077--47862131 Score: 83
Period size: 26 Copynumber: 2.1 Consensus size: 26
47862067 AACACACCAA
*
47862077 TATCGCAGCAAAGCTACTAGTAACAG
1 TATCGCAGCAAAGCTACCAGTAACAG
* *
47862103 TATCGTAGCAAAGCTGCCAGTAACAG
1 TATCGCAGCAAAGCTACCAGTAACAG
47862129 TAT
1 TAT
47862132 ACTTCCTCCA
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.36, C:0.22, G:0.20, T:0.22
Consensus pattern (26 bp):
TATCGCAGCAAAGCTACCAGTAACAG
Found at i:47862300 original size:27 final size:27
Alignment explanation
Indices: 47862278--47862531 Score: 373
Period size: 27 Copynumber: 9.4 Consensus size: 27
47862268 GAGTATAACA
* *
47862278 GTCATTTTACCTTATGGGGGTATTTTG
1 GTCATTTTACCCTATGGGGGTATTTCG
*
47862305 GTCATTTTACCCTACGGGGGTATTTCG
1 GTCATTTTACCCTATGGGGGTATTTCG
*
47862332 GTCATTTTACCCTATGGGGGTATTTGG
1 GTCATTTTACCCTATGGGGGTATTTCG
* * *
47862359 GTCATTTTACCTTACGGGGGTATTTTG
1 GTCATTTTACCCTATGGGGGTATTTCG
**
47862386 GTCATTTTACCCTACAGGGGTATTTCG
1 GTCATTTTACCCTATGGGGGTATTTCG
* *
47862413 ATCATTTTACCCTATAGGGGTATTTCG
1 GTCATTTTACCCTATGGGGGTATTTCG
* * *
47862440 ATCATTTTACCCTACGAGGGTATTTCG
1 GTCATTTTACCCTATGGGGGTATTTCG
*
47862467 GTCATTATACCCTATGGGGGTATTTCG
1 GTCATTTTACCCTATGGGGGTATTTCG
47862494 GTCATTTTACCCTATGGGGGTATTTCG
1 GTCATTTTACCCTATGGGGGTATTTCG
47862521 GTCATTTTACC
1 GTCATTTTACC
47862532 TGTTAGAGTA
Statistics
Matches: 206, Mismatches: 21, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 206 1.00
ACGTcount: A:0.17, C:0.19, G:0.24, T:0.41
Consensus pattern (27 bp):
GTCATTTTACCCTATGGGGGTATTTCG
Found at i:47862387 original size:81 final size:81
Alignment explanation
Indices: 47862278--47862532 Score: 411
Period size: 81 Copynumber: 3.1 Consensus size: 81
47862268 GAGTATAACA
*
47862278 GTCATTTTACCTTATGGGGGTATTTTGGTCATTTTACCCTACGGGGGTATTTCGGTCATTTTACC
1 GTCATTTTACCTTACGGGGGTATTTTGGTCATTTTACCCTACGGGGGTATTTCGGTCATTTTACC
*
47862343 CTATGGGGGTATTTGG
66 CTATGGGGGTATTTCG
* *
47862359 GTCATTTTACCTTACGGGGGTATTTTGGTCATTTTACCCTACAGGGGTATTTCGATCATTTTACC
1 GTCATTTTACCTTACGGGGGTATTTTGGTCATTTTACCCTACGGGGGTATTTCGGTCATTTTACC
*
47862424 CTATAGGGGTATTTCG
66 CTATGGGGGTATTTCG
* * * * * *
47862440 ATCATTTTACCCTACGAGGGTATTTCGGTCATTATACCCTATGGGGGTATTTCGGTCATTTTACC
1 GTCATTTTACCTTACGGGGGTATTTTGGTCATTTTACCCTACGGGGGTATTTCGGTCATTTTACC
47862505 CTATGGGGGTATTTCG
66 CTATGGGGGTATTTCG
47862521 GTCATTTTACCT
1 GTCATTTTACCT
47862533 GTTAGAGTAT
Statistics
Matches: 158, Mismatches: 16, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
81 158 1.00
ACGTcount: A:0.17, C:0.18, G:0.24, T:0.41
Consensus pattern (81 bp):
GTCATTTTACCTTACGGGGGTATTTTGGTCATTTTACCCTACGGGGGTATTTCGGTCATTTTACC
CTATGGGGGTATTTCG
Found at i:47864065 original size:27 final size:27
Alignment explanation
Indices: 47864031--47864103 Score: 112
Period size: 27 Copynumber: 2.7 Consensus size: 27
47864021 CATTCCAACA
47864031 TTACCCTATGAGGGTATTTTGGTCATT
1 TTACCCTATGAGGGTATTTTGGTCATT
*
47864058 TTACCCTA-CAGGGGTATTTTGGTCATT
1 TTACCCTATGA-GGGTATTTTGGTCATT
*
47864085 TTATCCTATGAGGGTATTT
1 TTACCCTATGAGGGTATTT
47864104 CAATCATTTT
Statistics
Matches: 41, Mismatches: 3, Indels: 4
0.85 0.06 0.08
Matches are distributed among these distances:
26 1 0.02
27 39 0.95
28 1 0.02
ACGTcount: A:0.19, C:0.15, G:0.22, T:0.44
Consensus pattern (27 bp):
TTACCCTATGAGGGTATTTTGGTCATT
Found at i:47866404 original size:27 final size:26
Alignment explanation
Indices: 47866370--47866582 Score: 194
Period size: 27 Copynumber: 7.9 Consensus size: 26
47866360 CCCTCCTGAT
* *
47866370 CAAAATACCCTCGAAGGGGAAAATGA
1 CAAAATACCCTCAAAGGGTAAAATGA
* * *
47866396 TCGAAATACCCTTAAAGGATAAAATGA
1 -CAAAATACCCTCAAAGGGTAAAATGA
* *
47866423 CTGAAATACCCTCAAAGAGTAAAATGA
1 C-AAAATACCCTCAAAGGGTAAAATGA
* *
47866450 CCAAAATACCCCCGAAGGGTAAAATGA
1 -CAAAATACCCTCAAAGGGTAAAATGA
* *
47866477 CTGAAATACCCTCAAAGGGTAAGATGA
1 C-AAAATACCCTCAAAGGGTAAAATGA
*
47866504 CCAAAATA-CCTCCGAAGGGTAAAATGA
1 -CAAAATACCCT-CAAAGGGTAAAATGA
* *
47866531 CTGAAATACCCTTAAAGGGTAAAATGA
1 C-AAAATACCCTCAAAGGGTAAAATGA
* * *
47866558 TCAAAATACCCCCATAGGTTAAAAT
1 -CAAAATACCCTCAAAGGGTAAAAT
47866583 AACTGTTTTA
Statistics
Matches: 151, Mismatches: 27, Indels: 16
0.78 0.14 0.08
Matches are distributed among these distances:
26 6 0.04
27 139 0.92
28 6 0.04
ACGTcount: A:0.45, C:0.20, G:0.17, T:0.18
Consensus pattern (26 bp):
CAAAATACCCTCAAAGGGTAAAATGA
Found at i:47866511 original size:81 final size:81
Alignment explanation
Indices: 47866370--47866582 Score: 241
Period size: 81 Copynumber: 2.6 Consensus size: 81
47866360 CCCTCCTGAT
* * **
47866370 CAAAATACCCTCGAAGGGGAAAATGATCGAAATACCCTTAAAGGATAAAATGACTGAAATACC-C
1 CAAAATACCCTCGAAGGGTAAAATGATCGAAATACCCTCAAAGGATAAAATGACCAAAATACCTC
47866434 TCAAAGAGTAAAATGAC
66 -CAAAGAGTAAAATGAC
* * *
47866451 CAAAATACCCCCGAAGGGTAAAATGA-CTGAAATACCCTCAAAGGGTAAGATGACCAAAATACCT
1 CAAAATACCCTCGAAGGGTAAAATGATC-GAAATACCCTCAAAGGATAAAATGACCAAAATACCT
* *
47866515 CCGAAGGGTAAAATGAC
65 CCAAAGAGTAAAATGAC
** ** * * * *
47866532 TGAAATACCCTTAAAGGGTAAAATGATCAAAATACCCCCATAGGTTAAAAT
1 CAAAATACCCTCGAAGGGTAAAATGATCGAAATACCCTCAAAGGATAAAAT
47866583 AACTGTTTTA
Statistics
Matches: 110, Mismatches: 19, Indels: 6
0.81 0.14 0.04
Matches are distributed among these distances:
80 1 0.01
81 107 0.97
82 2 0.02
ACGTcount: A:0.45, C:0.20, G:0.17, T:0.18
Consensus pattern (81 bp):
CAAAATACCCTCGAAGGGTAAAATGATCGAAATACCCTCAAAGGATAAAATGACCAAAATACCTC
CAAAGAGTAAAATGAC
Found at i:47866595 original size:54 final size:53
Alignment explanation
Indices: 47866372--47866587 Score: 270
Period size: 54 Copynumber: 4.0 Consensus size: 53
47866362 CTCCTGATCA
* * * * ** *
47866372 AAATACCCTCGAAGGGGAAAATGATCGAAATACCCTTAAAGGATAAAATGACTG
1 AAATACCCTCAAAGGGTAAAATGACCAAAATACCC-CCAAGGGTAAAATGACTG
*
47866426 AAATACCCTCAAAGAGTAAAATGACCAAAATACCCCCGAAGGGTAAAATGACTG
1 AAATACCCTCAAAGGGTAAAATGACCAAAATACCCCC-AAGGGTAAAATGACTG
* *
47866480 AAATACCCTCAAAGGGTAAGATGACCAAAATACCTCCGAAGGGTAAAATGACTG
1 AAATACCCTCAAAGGGTAAAATGACCAAAATACC-CCCAAGGGTAAAATGACTG
* * * *
47866534 AAATACCCTTAAAGGGTAAAATGATCAAAATACCCCCATAGGTTAAAATAACTG
1 AAATACCCTCAAAGGGTAAAATGACCAAAATACCCCCA-AGGGTAAAATGACTG
47866588 TTTTACCCCT
Statistics
Matches: 142, Mismatches: 17, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
53 3 0.02
54 137 0.96
55 2 0.01
ACGTcount: A:0.45, C:0.19, G:0.18, T:0.18
Consensus pattern (53 bp):
AAATACCCTCAAAGGGTAAAATGACCAAAATACCCCCAAGGGTAAAATGACTG
Found at i:47866831 original size:26 final size:26
Alignment explanation
Indices: 47866765--47866836 Score: 99
Period size: 26 Copynumber: 2.8 Consensus size: 26
47866755 ACGTATACTG
** *
47866765 TTACTGGCAGCTTTAATGCGTTACTA
1 TTACTGGCAGCTTTGCTGCGTCACTA
* *
47866791 TTTCTGGCAGTTTTGCTGCGTCACTA
1 TTACTGGCAGCTTTGCTGCGTCACTA
47866817 TTACTGGCAGCTTTGCTGCG
1 TTACTGGCAGCTTTGCTGCG
47866837 ATATTGGTGC
Statistics
Matches: 39, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 39 1.00
ACGTcount: A:0.15, C:0.22, G:0.24, T:0.39
Consensus pattern (26 bp):
TTACTGGCAGCTTTGCTGCGTCACTA
Found at i:47866993 original size:28 final size:28
Alignment explanation
Indices: 47866953--47867043 Score: 103
Period size: 28 Copynumber: 3.2 Consensus size: 28
47866943 CTAATTATTG
47866953 TATTGGGCTAAGGCCCACACTGTTACTA
1 TATTGGGCTAAGGCCCACACTGTTACTA
* * *
47866981 TATTGGGTTAAGGCCCACACATTGTTATTG
1 TATTGGGCTAAGGCCCACAC--TGTTACTA
**
47867011 TAACGGGCTAAGGCCCACACTG-TACTGA
1 TATTGGGCTAAGGCCCACACTGTTACT-A
47867039 TATTG
1 TATTG
47867044 TATAGGGCTC
Statistics
Matches: 50, Mismatches: 10, Indels: 6
0.76 0.15 0.09
Matches are distributed among these distances:
27 3 0.06
28 24 0.48
30 23 0.46
ACGTcount: A:0.25, C:0.22, G:0.23, T:0.30
Consensus pattern (28 bp):
TATTGGGCTAAGGCCCACACTGTTACTA
Found at i:47867023 original size:30 final size:28
Alignment explanation
Indices: 47866947--47867033 Score: 111
Period size: 28 Copynumber: 3.0 Consensus size: 28
47866937 ATTTTACTAA
47866947 TTATTGTATTGGGCTAAGGCCCACACTG
1 TTATTGTATTGGGCTAAGGCCCACACTG
* * *
47866975 TTACTATATTGGGTTAAGGCCCACACATTG
1 TTATTGTATTGGGCTAAGGCCCACAC--TG
**
47867005 TTATTGTAACGGGCTAAGGCCCACACTG
1 TTATTGTATTGGGCTAAGGCCCACACTG
47867033 T
1 T
47867034 ACTGATATTG
Statistics
Matches: 49, Mismatches: 8, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
28 26 0.53
30 23 0.47
ACGTcount: A:0.24, C:0.22, G:0.23, T:0.31
Consensus pattern (28 bp):
TTATTGTATTGGGCTAAGGCCCACACTG
Found at i:47867052 original size:33 final size:33
Alignment explanation
Indices: 47866948--47867058 Score: 89
Period size: 33 Copynumber: 3.6 Consensus size: 33
47866938 TTTTACTAAT
*
47866948 TATTGTATTGGGCTAAGGCCCACACTGTTACT-A
1 TATTGTATAGGGCTAAGGCCCACACTG-TACTGA
* * *
47866981 TA---T-T-GGGTTAAGGCCCACAC---ATTGT
1 TATTGTATAGGGCTAAGGCCCACACTGTACTGA
47867006 TATTGTA-ACGGGCTAAGGCCCACACTGTACTGA
1 TATTGTATA-GGGCTAAGGCCCACACTGTACTGA
*
47867039 TATTGTATAGGGCTCAGGCC
1 TATTGTATAGGGCTAAGGCC
47867059 TAGACTGATT
Statistics
Matches: 60, Mismatches: 7, Indels: 22
0.67 0.08 0.25
Matches are distributed among these distances:
24 2 0.03
25 2 0.03
28 16 0.27
29 1 0.02
30 16 0.27
33 22 0.37
34 1 0.02
ACGTcount: A:0.24, C:0.22, G:0.24, T:0.30
Consensus pattern (33 bp):
TATTGTATAGGGCTAAGGCCCACACTGTACTGA
Found at i:47871750 original size:41 final size:41
Alignment explanation
Indices: 47871693--47871775 Score: 141
Period size: 41 Copynumber: 2.0 Consensus size: 41
47871683 CTGGGATGGT
47871693 GAATGTTTCAATTGTGGCAAGAAGGGCCA-TTTTGCTCGTGA
1 GAATGTTTCAATTGTGGCAAGAAGGGCCAGTTTT-CTCGTGA
*
47871734 GAATGTTTCAATTGTGGCAAGAAGGGCTAGTTTTCTCGTGA
1 GAATGTTTCAATTGTGGCAAGAAGGGCCAGTTTTCTCGTGA
47871775 G
1 G
47871776 TGTAGATTCC
Statistics
Matches: 40, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
41 36 0.90
42 4 0.10
ACGTcount: A:0.24, C:0.13, G:0.30, T:0.33
Consensus pattern (41 bp):
GAATGTTTCAATTGTGGCAAGAAGGGCCAGTTTTCTCGTGA
Found at i:47878788 original size:27 final size:27
Alignment explanation
Indices: 47878758--47878809 Score: 68
Period size: 27 Copynumber: 1.9 Consensus size: 27
47878748 ATCTTATAGA
47878758 GGTATCATAGTAATTTTACCCTATGAT
1 GGTATCATAGTAATTTTACCCTATGAT
** * *
47878785 GGTATTTTGGTCATTTTACCCTATG
1 GGTATCATAGTAATTTTACCCTATG
47878810 GGGGTATTTT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 21 1.00
ACGTcount: A:0.23, C:0.15, G:0.17, T:0.44
Consensus pattern (27 bp):
GGTATCATAGTAATTTTACCCTATGAT
Found at i:47878930 original size:26 final size:27
Alignment explanation
Indices: 47878770--47878999 Score: 297
Period size: 27 Copynumber: 8.7 Consensus size: 27
47878760 TATCATAGTA
**
47878770 ATTTTACCCTATGATGGTATTTTGGTC
1 ATTTTACCCTATGGGGGTATTTTGGTC
47878797 ATTTTACCCTATGGGGGTATTTTGGTC
1 ATTTTACCCTATGGGGGTATTTTGGTC
* *
47878824 GTTTTACCCTATGGGGGTATTTTGTTC
1 ATTTTACCCTATGGGGGTATTTTGGTC
* *
47878851 ATTTTACCGTATAGGGGTATTTTGGTC
1 ATTTTACCCTATGGGGGTATTTTGGTC
***
47878878 ATTTT--CCTATGGGGGTATTTCAATC
1 ATTTTACCCTATGGGGGTATTTTGGTC
*
47878903 ATTTTATCCTAT-GGGGTATTTTGGTC
1 ATTTTACCCTATGGGGGTATTTTGGTC
47878929 ATTTTACCCTATGGGGGTATTTTGGTC
1 ATTTTACCCTATGGGGGTATTTTGGTC
* *
47878956 ATTTTACCCTAT-GGGGTATTTCGGTT
1 ATTTTACCCTATGGGGGTATTTTGGTC
* * *
47878982 ATTCTACCATATGAGGGT
1 ATTTTACCCTATGGGGGT
47879000 CTTTCGATCA
Statistics
Matches: 177, Mismatches: 22, Indels: 8
0.86 0.11 0.04
Matches are distributed among these distances:
25 20 0.11
26 44 0.25
27 113 0.64
ACGTcount: A:0.17, C:0.14, G:0.23, T:0.45
Consensus pattern (27 bp):
ATTTTACCCTATGGGGGTATTTTGGTC
Found at i:47878958 original size:53 final size:54
Alignment explanation
Indices: 47878770--47878999 Score: 297
Period size: 53 Copynumber: 4.3 Consensus size: 54
47878760 TATCATAGTA
** *
47878770 ATTTTACCCTATGATGGTATTTTGGTCATTTTACCCTATGGGGGTATTTTGGTC
1 ATTTTACCCTATGGGGGTATTTTGGTCATTTTACCCTATAGGGGTATTTTGGTC
* * *
47878824 GTTTTACCCTATGGGGGTATTTTGTTCATTTTACCGTATAGGGGTATTTTGGTC
1 ATTTTACCCTATGGGGGTATTTTGGTCATTTTACCCTATAGGGGTATTTTGGTC
*** *
47878878 ATTTT--CCTATGGGGGTATTTCAATCATTTTATCCTAT-GGGGTATTTTGGTC
1 ATTTTACCCTATGGGGGTATTTTGGTCATTTTACCCTATAGGGGTATTTTGGTC
* *
47878929 ATTTTACCCTATGGGGGTATTTTGGTCATTTTACCCTAT-GGGGTATTTCGGTT
1 ATTTTACCCTATGGGGGTATTTTGGTCATTTTACCCTATAGGGGTATTTTGGTC
* * *
47878982 ATTCTACCATATGAGGGT
1 ATTTTACCCTATGGGGGT
47879000 CTTTCGATCA
Statistics
Matches: 153, Mismatches: 21, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
51 19 0.12
52 27 0.18
53 55 0.36
54 52 0.34
ACGTcount: A:0.17, C:0.14, G:0.23, T:0.45
Consensus pattern (54 bp):
ATTTTACCCTATGGGGGTATTTTGGTCATTTTACCCTATAGGGGTATTTTGGTC
Found at i:47879068 original size:29 final size:29
Alignment explanation
Indices: 47879022--47879087 Score: 123
Period size: 29 Copynumber: 2.3 Consensus size: 29
47879012 ATAGTGTAAA
47879022 TGGGCCCAAGGCCAATTACTCGACCTAAG
1 TGGGCCCAAGGCCAATTACTCGACCTAAG
*
47879051 TGGGCCCAAGGCCCATTACTCGACCTAAG
1 TGGGCCCAAGGCCAATTACTCGACCTAAG
47879080 TGGGCCCA
1 TGGGCCCA
47879088 CACACTCGTG
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 36 1.00
ACGTcount: A:0.24, C:0.33, G:0.26, T:0.17
Consensus pattern (29 bp):
TGGGCCCAAGGCCAATTACTCGACCTAAG
Found at i:47886662 original size:65 final size:65
Alignment explanation
Indices: 47886586--47886716 Score: 226
Period size: 65 Copynumber: 2.0 Consensus size: 65
47886576 GGATATTCTC
* * *
47886586 TAGAAGGCTAGATATTATACATGAACATTCTAGTTATTAGATTTTTTTTAAATTAATGGTAAGGA
1 TAGAAGACTAGATATTATACATGAACATTCTAGTTATTAGATATTTTTGAAATTAATGGTAAGGA
*
47886651 TAGAAGACTAGATATTATATATGAACATTCTAGTTATTAGATATTTTTGAAATTAATGGTAAGGA
1 TAGAAGACTAGATATTATACATGAACATTCTAGTTATTAGATATTTTTGAAATTAATGGTAAGGA
47886716 T
1 T
47886717 GTTGACATGT
Statistics
Matches: 62, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
65 62 1.00
ACGTcount: A:0.38, C:0.05, G:0.17, T:0.40
Consensus pattern (65 bp):
TAGAAGACTAGATATTATACATGAACATTCTAGTTATTAGATATTTTTGAAATTAATGGTAAGGA
Found at i:47893719 original size:9 final size:9
Alignment explanation
Indices: 47893686--47893752 Score: 50
Period size: 9 Copynumber: 7.3 Consensus size: 9
47893676 TAAAATGATA
47893686 AATGATAAAT
1 AATGAT-AAT
47893696 AAT-ATAAT
1 AATGATAAT
47893704 ACTATGATAAT
1 A--ATGATAAT
*
47893715 AATGAT-GT
1 AATGATAAT
*
47893723 AATTATAAT
1 AATGATAAT
*
47893732 AATGATAAC
1 AATGATAAT
47893741 AAT-ATTAAT
1 AATGA-TAAT
47893750 AAT
1 AAT
47893753 CAGATCGCAA
Statistics
Matches: 46, Mismatches: 6, Indels: 11
0.73 0.10 0.17
Matches are distributed among these distances:
8 11 0.24
9 24 0.52
10 5 0.11
11 6 0.13
ACGTcount: A:0.54, C:0.03, G:0.07, T:0.36
Consensus pattern (9 bp):
AATGATAAT
Found at i:47895045 original size:6 final size:6
Alignment explanation
Indices: 47895034--47895064 Score: 62
Period size: 6 Copynumber: 5.2 Consensus size: 6
47895024 TTTACAATAT
47895034 TTTTTC TTTTTC TTTTTC TTTTTC TTTTTC T
1 TTTTTC TTTTTC TTTTTC TTTTTC TTTTTC T
47895065 GTTTATGCCA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 25 1.00
ACGTcount: A:0.00, C:0.16, G:0.00, T:0.84
Consensus pattern (6 bp):
TTTTTC
Found at i:47896148 original size:11 final size:11
Alignment explanation
Indices: 47896112--47896170 Score: 77
Period size: 11 Copynumber: 5.4 Consensus size: 11
47896102 TAAATCCTTT
*
47896112 CTCTC-AATTT
1 CTCTCAAATTC
47896122 CTCTCCAATATT-
1 CTCT-CAA-ATTC
47896134 CTCTCAAATTC
1 CTCTCAAATTC
47896145 CTCTCAAATTC
1 CTCTCAAATTC
47896156 CTCTCAAATTC
1 CTCTCAAATTC
47896167 CTCT
1 CTCT
47896171 TAAAAATGCT
Statistics
Matches: 45, Mismatches: 0, Indels: 7
0.87 0.00 0.13
Matches are distributed among these distances:
10 7 0.16
11 30 0.67
12 5 0.11
13 3 0.07
ACGTcount: A:0.24, C:0.36, G:0.00, T:0.41
Consensus pattern (11 bp):
CTCTCAAATTC
Found at i:47897391 original size:7 final size:7
Alignment explanation
Indices: 47897379--47897418 Score: 80
Period size: 7 Copynumber: 5.7 Consensus size: 7
47897369 TAGTCGATTG
47897379 GTATTTA
1 GTATTTA
47897386 GTATTTA
1 GTATTTA
47897393 GTATTTA
1 GTATTTA
47897400 GTATTTA
1 GTATTTA
47897407 GTATTTA
1 GTATTTA
47897414 GTATT
1 GTATT
47897419 ATGTATTATG
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 33 1.00
ACGTcount: A:0.28, C:0.00, G:0.15, T:0.57
Consensus pattern (7 bp):
GTATTTA
Found at i:47899760 original size:125 final size:125
Alignment explanation
Indices: 47899511--47899801 Score: 465
Period size: 126 Copynumber: 2.3 Consensus size: 125
47899501 TTAAGCCAAA
* **
47899511 CAGGAGCTACTGTAGCAAAAGCACGTCCACGTAAGAGCTTCTTTCAGTACTTTGCTGACAAAGCA
1 CAGGAGCTACTGTAGCAAAAGCGCGTCCACGTGGGAGCTTCTTTCAGTACTTTGCTGACAAAGCA
*
47899576 TCCTGCTTAAAGTGTTTTTGACACTATTTGCTCAGAAACGTCTACTCGAAATTATTTTTT
66 TCCTGCTTAAAGCGTTTTTGACACTATTTGCTCAGAAACGTCTACTCGAAATTATTTTTT
* *
47899636 CTGGAGCTACTGTAGCAAAAGCGCGTCCACGTGGGAGCTTCTTTCAGTACTTTTGCTGACAATGC
1 CAGGAGCTACTGTAGCAAAAGCGCGTCCACGTGGGAGCTTCTTTCAGTAC-TTTGCTGACAAAGC
* * *
47899701 ATCCTGCTTAAAGCGTTTTTGACACTATTTGGTTAGAAACGTCTTCTCGAAATTATTTTTT
65 ATCCTGCTTAAAGCGTTTTTGACACTATTTGCTCAGAAACGTCTACTCGAAATTATTTTTT
* * *
47899762 CACGAGCTACTGTAGCAAAAGAGCGTCCACATGGGAGCTT
1 CAGGAGCTACTGTAGCAAAAGCGCGTCCACGTGGGAGCTT
47899802 TTTTAAATTA
Statistics
Matches: 152, Mismatches: 13, Indels: 1
0.92 0.08 0.01
Matches are distributed among these distances:
125 46 0.30
126 106 0.70
ACGTcount: A:0.26, C:0.22, G:0.20, T:0.32
Consensus pattern (125 bp):
CAGGAGCTACTGTAGCAAAAGCGCGTCCACGTGGGAGCTTCTTTCAGTACTTTGCTGACAAAGCA
TCCTGCTTAAAGCGTTTTTGACACTATTTGCTCAGAAACGTCTACTCGAAATTATTTTTT
Found at i:47900040 original size:29 final size:27
Alignment explanation
Indices: 47899995--47900048 Score: 65
Period size: 29 Copynumber: 1.9 Consensus size: 27
47899985 TTTTCTTTAA
*
47899995 AACCCTAAATCTAAAAACCATAAAACCCT
1 AACCCTAAACCTAAAAA-CA-AAAACCCT
47900024 AACCCTAAACCCT-AAAACAAAAACC
1 AACCCTAAA-CCTAAAAACAAAAACC
47900049 TAAAACCCTA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
27 6 0.26
28 2 0.09
29 13 0.57
30 2 0.09
ACGTcount: A:0.54, C:0.33, G:0.00, T:0.13
Consensus pattern (27 bp):
AACCCTAAACCTAAAAACAAAAACCCT
Found at i:47902733 original size:86 final size:87
Alignment explanation
Indices: 47902638--47902796 Score: 218
Period size: 86 Copynumber: 1.8 Consensus size: 87
47902628 TTAAGGGTAT
* **
47902638 AAAAAGCCCTCAAACTTTTTCAAAAAAA-AGCA-ATTAAG-CC-ATTTTTTTTTGCATTCAATTG
1 AAAAAGCCCTCAAAATTTTTCAAAAAAAGAAAACATTAAGCCCTATTTTTTTTTGC--TCAATTG
47902699 GGTACTTGAAATTTTAAAATACAC
64 GGTACTTGAAATTTTAAAATACAC
*
47902723 AAAAAGGCCCTCAAAATTTTTCAAAAAAAGAAAACATTAAGCCCTTTTTTTTTTTGCTCAATTGG
1 AAAAA-GCCCTCAAAATTTTTCAAAAAAAGAAAACATTAAGCCCTATTTTTTTTTGCTCAATTGG
*
47902788 GTATTTGAA
65 GTACTTGAA
47902797 CTGCCAAAAT
Statistics
Matches: 64, Mismatches: 5, Indels: 7
0.84 0.07 0.09
Matches are distributed among these distances:
85 5 0.08
86 22 0.34
87 2 0.03
88 22 0.34
89 2 0.03
90 11 0.17
ACGTcount: A:0.39, C:0.16, G:0.11, T:0.35
Consensus pattern (87 bp):
AAAAAGCCCTCAAAATTTTTCAAAAAAAGAAAACATTAAGCCCTATTTTTTTTTGCTCAATTGGG
TACTTGAAATTTTAAAATACAC
Found at i:47902818 original size:88 final size:85
Alignment explanation
Indices: 47902638--47902815 Score: 207
Period size: 88 Copynumber: 2.0 Consensus size: 85
47902628 TTAAGGGTAT
* **
47902638 AAAAA-GCCCTCAAACTTTTTCAAAAAAAAGCAATTAAGCCATTTTTTTTTGCATTCAATTGGGT
1 AAAAAGGCCCTCAAAATTTTTCAAAAAAAAAAAATTAAGCCATTTTTTTTTGCA-TCAATTGGGT
***
47902702 ACTTGAAATTTTAAAATACAC
65 ACTTGAAATGCCAAAATACAC
*
47902723 AAAAAGGCCCTCAAAATTTTTCAAAAAAAGAAAACATTAAGCCCTTTTTTTTTTTGC-TCAATTG
1 AAAAAGGCCCTCAAAATTTTTCAAAAAAA-AAAA-ATTAAG-CC-ATTTTTTTTTGCATCAATTG
* *
47902787 GGTATTTGAACTGCCAAAATACATC
62 GGTACTTGAAATGCCAAAATACA-C
47902812 AAAA
1 AAAA
47902816 GGCATCAGGT
Statistics
Matches: 78, Mismatches: 9, Indels: 8
0.82 0.09 0.08
Matches are distributed among these distances:
85 5 0.06
86 22 0.28
87 2 0.03
88 31 0.40
89 7 0.09
90 11 0.14
ACGTcount: A:0.40, C:0.17, G:0.10, T:0.33
Consensus pattern (85 bp):
AAAAAGGCCCTCAAAATTTTTCAAAAAAAAAAAATTAAGCCATTTTTTTTTGCATCAATTGGGTA
CTTGAAATGCCAAAATACAC
Found at i:47902947 original size:21 final size:22
Alignment explanation
Indices: 47902900--47902948 Score: 73
Period size: 22 Copynumber: 2.3 Consensus size: 22
47902890 ATAAAAGTTC
*
47902900 TAAAAAAATATT-AAATTTTAG
1 TAAAAAAATATTAAAAATTTAG
*
47902921 TAAAAAAATATTAAAAATTTAT
1 TAAAAAAATATTAAAAATTTAG
47902943 TAAAAA
1 TAAAAA
47902949 TTATAAAATA
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
21 12 0.48
22 13 0.52
ACGTcount: A:0.63, C:0.00, G:0.02, T:0.35
Consensus pattern (22 bp):
TAAAAAAATATTAAAAATTTAG
Found at i:47902987 original size:10 final size:10
Alignment explanation
Indices: 47902925--47902996 Score: 55
Period size: 10 Copynumber: 7.3 Consensus size: 10
47902915 TTTTAGTAAA
47902925 AAAATATTA-
1 AAAATATTAT
47902934 AAAAT-TTATT
1 AAAATATTA-T
47902944 AAAA-ATTAT
1 AAAATATTAT
47902953 AAAATA-TAT
1 AAAATATTAT
*
47902962 AGAAATA-TAG
1 A-AAATATTAT
*
47902972 AAAAAAGTTTAT
1 AAAATA--TTAT
47902984 AAAATATTAT
1 AAAATATTAT
47902994 AAA
1 AAA
47902997 GTCATAAGAA
Statistics
Matches: 51, Mismatches: 4, Indels: 15
0.73 0.06 0.21
Matches are distributed among these distances:
8 3 0.06
9 18 0.35
10 23 0.45
12 7 0.14
ACGTcount: A:0.62, C:0.00, G:0.04, T:0.33
Consensus pattern (10 bp):
AAAATATTAT
Found at i:47903017 original size:41 final size:40
Alignment explanation
Indices: 47902924--47903018 Score: 97
Period size: 41 Copynumber: 2.4 Consensus size: 40
47902914 ATTTTAGTAA
* *
47902924 AAAAATATTAAAAATTTATTAAAAATTATAAAATATATAG
1 AAAATTATAAAAAATTTATTAAAAATTATAAAATATATAG
* *
47902964 -AAATATAGAAAAAAGTTTA-TAAAATATTATAAAGTCATA-AG
1 AAAAT-TATAAAAAA-TTTATTAAAA-ATTATAAAAT-ATATAG
47903005 AAAATTATAAAAAA
1 AAAATTATAAAAAA
47903019 AAATAAAGAA
Statistics
Matches: 45, Mismatches: 5, Indels: 9
0.76 0.08 0.15
Matches are distributed among these distances:
39 3 0.07
40 12 0.27
41 23 0.51
42 7 0.16
ACGTcount: A:0.63, C:0.01, G:0.05, T:0.31
Consensus pattern (40 bp):
AAAATTATAAAAAATTTATTAAAAATTATAAAATATATAG
Found at i:47903284 original size:10 final size:10
Alignment explanation
Indices: 47903269--47903295 Score: 54
Period size: 10 Copynumber: 2.7 Consensus size: 10
47903259 CTTTTATGAT
47903269 TTTTATAAAA
1 TTTTATAAAA
47903279 TTTTATAAAA
1 TTTTATAAAA
47903289 TTTTATA
1 TTTTATA
47903296 TTTTTAATGA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 17 1.00
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (10 bp):
TTTTATAAAA
Found at i:47903320 original size:37 final size:36
Alignment explanation
Indices: 47903279--47903360 Score: 103
Period size: 37 Copynumber: 2.2 Consensus size: 36
47903269 TTTTATAAAA
* *
47903279 TTTTATAAAATTTTAT-ATTTTTAATGATATTTATATT
1 TTTTATAAAATTTAATAAATTTTAATGAT-TTT-TATT
*
47903316 TTTTATTAAAATTTAATAAATTTTATTGATTTTTATT
1 TTTTA-TAAAATTTAATAAATTTTAATGATTTTTATT
47903353 TTTTATAA
1 TTTTATAA
47903361 TTTTTCCTGC
Statistics
Matches: 40, Mismatches: 3, Indels: 5
0.83 0.06 0.10
Matches are distributed among these distances:
36 3 0.08
37 14 0.35
38 13 0.32
39 10 0.25
ACGTcount: A:0.35, C:0.00, G:0.02, T:0.62
Consensus pattern (36 bp):
TTTTATAAAATTTAATAAATTTTAATGATTTTTATT
Found at i:47903329 original size:19 final size:19
Alignment explanation
Indices: 47903279--47903330 Score: 54
Period size: 19 Copynumber: 2.7 Consensus size: 19
47903269 TTTTATAAAA
47903279 TTTTATAAAATTT-TATAT
1 TTTTATAAAATTTATATAT
* *
47903297 TTTTAATGATATTTATAT-T
1 TTTT-ATAAAATTTATATAT
47903316 TTTTATTAAAATTTA
1 TTTTA-TAAAATTTA
47903331 ATAAATTTTA
Statistics
Matches: 27, Mismatches: 4, Indels: 5
0.75 0.11 0.14
Matches are distributed among these distances:
18 5 0.19
19 19 0.70
20 3 0.11
ACGTcount: A:0.37, C:0.00, G:0.02, T:0.62
Consensus pattern (19 bp):
TTTTATAAAATTTATATAT
Found at i:47903364 original size:47 final size:46
Alignment explanation
Indices: 47903250--47903365 Score: 114
Period size: 48 Copynumber: 2.5 Consensus size: 46
47903240 TCTATATACA
*
47903250 TTTAATAATCTTTTATGA-TTTTTATAAAATTTTATAAAATTTTATATT
1 TTTAAT-AT-TTTTAT-ATTTTTTATAAAATTTAATAAAATTTTATATT
*
47903298 TTTAATGATATTTATATTTTTTATTAAAATTTAAT-AAATTTTATTGATT
1 TTTAAT-ATTTTTATATTTTTTA-TAAAATTTAATAAAATTTTA-T-ATT
*
47903347 TTT-AT-TTTTTATAATTTTT
1 TTTAATATTTTTATATTTTTT
47903366 CCTGCATGTC
Statistics
Matches: 59, Mismatches: 5, Indels: 10
0.80 0.07 0.14
Matches are distributed among these distances:
46 13 0.22
47 19 0.32
48 21 0.36
49 6 0.10
ACGTcount: A:0.34, C:0.01, G:0.03, T:0.62
Consensus pattern (46 bp):
TTTAATATTTTTATATTTTTTATAAAATTTAATAAAATTTTATATT
Found at i:47907541 original size:2 final size:2
Alignment explanation
Indices: 47907534--47907567 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
47907524 TTAAAGTTGA
47907534 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
47907568 TACTAGAATT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:47908051 original size:32 final size:32
Alignment explanation
Indices: 47908015--47908077 Score: 90
Period size: 32 Copynumber: 2.0 Consensus size: 32
47908005 CAGTTAATCA
* *
47908015 ATGAGTTATCAAATTAAATTTATTAATTTATC
1 ATGAGTTATCAAATTAAAGTAATTAATTTATC
* *
47908047 ATGAGTTATTAAATTTAAGTAATTAATTTAT
1 ATGAGTTATCAAATTAAAGTAATTAATTTAT
47908078 AAGTTTATAA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
32 27 1.00
ACGTcount: A:0.41, C:0.03, G:0.08, T:0.48
Consensus pattern (32 bp):
ATGAGTTATCAAATTAAAGTAATTAATTTATC
Found at i:47915027 original size:16 final size:15
Alignment explanation
Indices: 47915008--47915065 Score: 57
Period size: 15 Copynumber: 3.9 Consensus size: 15
47914998 TAATAAATAA
47915008 TAAATAAACTAAAAAT
1 TAAA-AAACTAAAAAT
* *
47915024 TAAAATACTCAAAAT
1 TAAAAAACTAAAAAT
*
47915039 T--AAAACTAAAAAA
1 TAAAAAACTAAAAAT
47915052 TAAAAATACTAAAA
1 TAAAAA-ACTAAAA
47915066 TTATTATATT
Statistics
Matches: 34, Mismatches: 5, Indels: 6
0.76 0.11 0.13
Matches are distributed among these distances:
13 10 0.29
15 13 0.38
16 11 0.32
ACGTcount: A:0.69, C:0.09, G:0.00, T:0.22
Consensus pattern (15 bp):
TAAAAAACTAAAAAT
Found at i:47915039 original size:15 final size:14
Alignment explanation
Indices: 47915019--47915068 Score: 57
Period size: 14 Copynumber: 3.5 Consensus size: 14
47915009 AAATAAACTA
47915019 AAAATTAAAATACT
1 AAAATTAAAATACT
*
47915033 CAAAATTAAAACTA-A
1 -AAAATTAAAA-TACT
*
47915048 AAAATAAAAATACT
1 AAAATTAAAATACT
47915062 AAAATTA
1 AAAATTA
47915069 TTATATTAAT
Statistics
Matches: 29, Mismatches: 4, Indels: 5
0.76 0.11 0.13
Matches are distributed among these distances:
13 2 0.07
14 15 0.52
15 10 0.34
16 2 0.07
ACGTcount: A:0.68, C:0.08, G:0.00, T:0.24
Consensus pattern (14 bp):
AAAATTAAAATACT
Found at i:47915045 original size:28 final size:28
Alignment explanation
Indices: 47915013--47915068 Score: 87
Period size: 29 Copynumber: 2.0 Consensus size: 28
47915003 AATAATAAAT
*
47915013 AAACT-AAAAATTAAAATACTCAAAATTA
1 AAACTAAAAAATAAAAATACT-AAAATTA
47915041 AAACTAAAAAATAAAAATACTAAAATTA
1 AAACTAAAAAATAAAAATACTAAAATTA
47915069 TTATATTAAT
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
28 12 0.46
29 14 0.54
ACGTcount: A:0.68, C:0.09, G:0.00, T:0.23
Consensus pattern (28 bp):
AAACTAAAAAATAAAAATACTAAAATTA
Found at i:47915085 original size:29 final size:29
Alignment explanation
Indices: 47915053--47915108 Score: 78
Period size: 29 Copynumber: 2.0 Consensus size: 29
47915043 ACTAAAAAAT
* * *
47915053 AAAAATAC-TAAAATTATTATATTAATGA
1 AAAAATACTTAAAAGTAATACATTAATGA
47915081 AAAAATACTTAAAAGTAATACATTAATG
1 AAAAATACTTAAAAGTAATACATTAATG
47915109 GCAAAACACT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
28 8 0.33
29 16 0.67
ACGTcount: A:0.57, C:0.05, G:0.05, T:0.32
Consensus pattern (29 bp):
AAAAATACTTAAAAGTAATACATTAATGA
Found at i:47923355 original size:22 final size:21
Alignment explanation
Indices: 47923330--47923371 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 21
47923320 TAGTTAAAAT
47923330 ATTAAAA-TAATAAAATAAAGTA
1 ATTAAAATTAA-AAAA-AAAGTA
47923352 ATTAAAATTAAAAAAAAAGT
1 ATTAAAATTAAAAAAAAAGT
47923372 GGTCATCATC
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
21 5 0.26
22 11 0.58
23 3 0.16
ACGTcount: A:0.69, C:0.00, G:0.05, T:0.26
Consensus pattern (21 bp):
ATTAAAATTAAAAAAAAAGTA
Found at i:47932108 original size:14 final size:14
Alignment explanation
Indices: 47932091--47932129 Score: 51
Period size: 14 Copynumber: 2.7 Consensus size: 14
47932081 ACATATGTTT
*
47932091 TAATTTTTTATTTA
1 TAATTTTTAATTTA
*
47932105 TAATTTATAATTTA
1 TAATTTTTAATTTA
47932119 TATATTTTTAA
1 TA-ATTTTTAA
47932130 ATATTTTTAA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
14 14 0.67
15 7 0.33
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (14 bp):
TAATTTTTAATTTA
Found at i:47939452 original size:2 final size:2
Alignment explanation
Indices: 47939447--47939567 Score: 242
Period size: 2 Copynumber: 60.5 Consensus size: 2
47939437 ACTTAAAGCA
47939447 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC
1 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC
47939489 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC
1 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC
47939531 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC A
1 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC A
47939568 TATATATATG
Statistics
Matches: 119, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 119 1.00
ACGTcount: A:0.50, C:0.50, G:0.00, T:0.00
Consensus pattern (2 bp):
AC
Found at i:47946669 original size:6 final size:6
Alignment explanation
Indices: 47946658--47946686 Score: 51
Period size: 6 Copynumber: 5.0 Consensus size: 6
47946648 AAATAATTGT
47946658 ATATTA ATATTA ATATTA ATA-TA ATATTA
1 ATATTA ATATTA ATATTA ATATTA ATATTA
47946687 TAATTAAATT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
5 5 0.23
6 17 0.77
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (6 bp):
ATATTA
Found at i:47952073 original size:22 final size:21
Alignment explanation
Indices: 47952048--47952096 Score: 55
Period size: 22 Copynumber: 2.2 Consensus size: 21
47952038 TAAATAGTTT
47952048 TTATTCAAAT-TTAATTATAAAA
1 TTATT-AAATATTAA-TATAAAA
47952070 TTATATAAATATTAATATAAAA
1 TTAT-TAAATATTAATATAAAA
*
47952092 ATATT
1 TTATT
47952097 TTTCTGTTTT
Statistics
Matches: 24, Mismatches: 1, Indels: 5
0.80 0.03 0.17
Matches are distributed among these distances:
21 1 0.04
22 18 0.75
23 5 0.21
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.45
Consensus pattern (21 bp):
TTATTAAATATTAATATAAAA
Found at i:47959314 original size:17 final size:18
Alignment explanation
Indices: 47959281--47959314 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
47959271 AGCCGTGTGC
*
47959281 CCAGGCCATGTTGAGGAA
1 CCAGACCATGTTGAGGAA
47959299 CCAGACCATG-TGAGGA
1 CCAGACCATGTTGAGGA
47959315 GTCTACATGA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.29, C:0.24, G:0.32, T:0.15
Consensus pattern (18 bp):
CCAGACCATGTTGAGGAA
Found at i:47959331 original size:21 final size:21
Alignment explanation
Indices: 47959302--47959352 Score: 68
Period size: 21 Copynumber: 2.4 Consensus size: 21
47959292 TGAGGAACCA
* *
47959302 GACCATGTGA-GGAGTCTACAT
1 GACCGTGTGATGGAGGC-ACAT
47959323 GACCGTGTGATGGAGGCACAT
1 GACCGTGTGATGGAGGCACAT
47959344 GACCGTGTG
1 GACCGTGTG
47959353 GCTGAGGTAC
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
21 22 0.81
22 5 0.19
ACGTcount: A:0.24, C:0.20, G:0.35, T:0.22
Consensus pattern (21 bp):
GACCGTGTGATGGAGGCACAT
Found at i:47959359 original size:21 final size:22
Alignment explanation
Indices: 47959319--47959374 Score: 64
Period size: 21 Copynumber: 2.6 Consensus size: 22
47959309 TGAGGAGTCT
47959319 ACATGACCGTGT-GATGGAGGC
1 ACATGACCGTGTGGATGGAGGC
* *
47959340 ACATGACCGTGTGGCT-GAGGT
1 ACATGACCGTGTGGATGGAGGC
47959361 ACATG-CTCGTGTGG
1 ACATGAC-CGTGTGG
47959375 TAGAGTTACA
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
20 1 0.03
21 28 0.90
22 2 0.06
ACGTcount: A:0.20, C:0.20, G:0.38, T:0.23
Consensus pattern (22 bp):
ACATGACCGTGTGGATGGAGGC
Found at i:47959384 original size:21 final size:21
Alignment explanation
Indices: 47959346--47959396 Score: 61
Period size: 21 Copynumber: 2.4 Consensus size: 21
47959336 AGGCACATGA
47959346 CCGTGTGGCTGAGGTACAT-G
1 CCGTGTGGCTGAGGTACATAG
*
47959366 CTCGTGTGG-TAGAGTTACATAG
1 C-CGTGTGGCT-GAGGTACATAG
47959388 CCGTGTGGC
1 CCGTGTGGC
47959397 CAGCTCATGT
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
20 2 0.08
21 22 0.85
22 2 0.08
ACGTcount: A:0.16, C:0.20, G:0.37, T:0.27
Consensus pattern (21 bp):
CCGTGTGGCTGAGGTACATAG
Found at i:47960181 original size:22 final size:23
Alignment explanation
Indices: 47960143--47960197 Score: 69
Period size: 22 Copynumber: 2.4 Consensus size: 23
47960133 AATAAATAAT
47960143 TAAAACTTTAAAACAAAAC-AAAA
1 TAAAAC-TTAAAACAAAACTAAAA
* *
47960166 TAAAACTTAAACCAAAACTAGAA
1 TAAAACTTAAAACAAAACTAAAA
47960189 TAAAA-TTAA
1 TAAAACTTAA
47960198 TTCCACTTTT
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
22 15 0.52
23 14 0.48
ACGTcount: A:0.65, C:0.13, G:0.02, T:0.20
Consensus pattern (23 bp):
TAAAACTTAAAACAAAACTAAAA
Found at i:47960769 original size:19 final size:18
Alignment explanation
Indices: 47960730--47960769 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
47960720 TATTAAATTC
* *
47960730 TTTTATTTTTTTCTTCGA
1 TTTTATTTTTTTCTCCAA
47960748 TTTTATTTTTTTGCTCCAA
1 TTTTATTTTTTT-CTCCAA
47960767 TTT
1 TTT
47960770 CGTTGTTGAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
18 12 0.63
19 7 0.37
ACGTcount: A:0.12, C:0.12, G:0.05, T:0.70
Consensus pattern (18 bp):
TTTTATTTTTTTCTCCAA
Found at i:47967564 original size:41 final size:41
Alignment explanation
Indices: 47967365--47967550 Score: 273
Period size: 41 Copynumber: 4.5 Consensus size: 41
47967355 GACTTTTCGG
* * *
47967365 GGGCTTTAGCGGTGATTTTATGGAAGCGCCGCTAATGTTCT
1 GGGCTTTAGCGGCGTTTTTATGTAAGCGCCGCTAATGTTCT
*
47967406 GGGCTTTAGCGGCGTTTTTATGTAAGCGCCGCTAATGTTAT
1 GGGCTTTAGCGGCGTTTTTATGTAAGCGCCGCTAATGTTCT
*
47967447 GTGCTTTAGCGGCGTTTTTATGTAAGCGCCGCTAATGTTCT
1 GGGCTTTAGCGGCGTTTTTATGTAAGCGCCGCTAATGTTCT
* * * *
47967488 GAGCTTTAGCGGCGTTTTTATTTATGCGCCGCTAATATTCT
1 GGGCTTTAGCGGCGTTTTTATGTAAGCGCCGCTAATGTTCT
* *
47967529 GGGATTTAGTGGCGTTTTTATG
1 GGGCTTTAGCGGCGTTTTTATG
47967551 GATGTGGCGC
Statistics
Matches: 131, Mismatches: 14, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
41 131 1.00
ACGTcount: A:0.16, C:0.17, G:0.28, T:0.39
Consensus pattern (41 bp):
GGGCTTTAGCGGCGTTTTTATGTAAGCGCCGCTAATGTTCT
Found at i:47967577 original size:82 final size:82
Alignment explanation
Indices: 47967369--47967589 Score: 257
Period size: 82 Copynumber: 2.7 Consensus size: 82
47967359 TTTCGGGGGC
* * * *
47967369 TTTAGCGGTGATTTTATGGAAGCGCCGCTAATGTTCTGGGCTTTAGCGGCGTTTTTATGTAAGCG
1 TTTAGCGGCGTTTTTATGGAAGCGCCGCTAATGTTCAGAGCTTTAGCGGCGTTTTTATGTAAGCG
* * *
47967434 CCGCTAATGTTATGTGC
66 CCGCTAATATTATGGGA
* * * *
47967451 TTTAGCGGCGTTTTTATGTAAGCGCCGCTAATGTTCTGAGCTTTAGCGGCGTTTTTATTTATGCG
1 TTTAGCGGCGTTTTTATGGAAGCGCCGCTAATGTTCAGAGCTTTAGCGGCGTTTTTATGTAAGCG
*
47967516 CCGCTAATATTCTGGGA
66 CCGCTAATATTATGGGA
* * * *
47967533 TTTAGTGGCGTTTTTATGGATGTGGCGCTAAT-TCTCAG-GCCTTTAGCGGCGCTTTTT
1 TTTAGCGGCGTTTTTATGGAAGCGCCGCTAATGT-TCAGAG-CTTTAGCGGCG-TTTTT
47967590 TAAAAACACC
Statistics
Matches: 120, Mismatches: 16, Indels: 5
0.85 0.11 0.04
Matches are distributed among these distances:
81 2 0.02
82 113 0.94
83 5 0.04
ACGTcount: A:0.16, C:0.18, G:0.28, T:0.39
Consensus pattern (82 bp):
TTTAGCGGCGTTTTTATGGAAGCGCCGCTAATGTTCAGAGCTTTAGCGGCGTTTTTATGTAAGCG
CCGCTAATATTATGGGA
Found at i:47967602 original size:123 final size:123
Alignment explanation
Indices: 47967367--47967606 Score: 272
Period size: 123 Copynumber: 2.0 Consensus size: 123
47967357 CTTTTCGGGG
* * * *
47967367 GCTTTAGCGGTGATTTTATGGAAGCGCCGCTAATGTTCTGGGCTTTAGCGGCGTTTTTATGTAAG
1 GCTTTAGCGGCGATTTTATGGAAGCGCCGCTAATATTCTGGGATTTAGCGGCGTTTTTATGGAAG
** * *
47967432 CGCCGCTAATGTTATGTGCTTTAGCGGCGTTTTTATGTAAGCGCCGCTAATGTTCTGA
66 CGCCGCTAATGTTATGTGCTTTAGCGGCGTTTTTATAAAAACACCGCTAATGTTCTGA
* ** * * *
47967490 GCTTTAGCGGCGTTTTTATTTATGCGCCGCTAATATTCTGGGATTTAGTGGCGTTTTTATGGATG
1 GCTTTAGCGGCGATTTTATGGAAGCGCCGCTAATATTCTGGGATTTAGCGGCGTTTTTATGGAAG
* *
47967555 TGGCGCTAAT-TCTCA-G-GCCTTTAGCGGCGCTTTTT-TAAAAACACCGCTAATG
66 CGCCGCTAATGT-T-ATGTG-CTTTAGCGGCG-TTTTTATAAAAACACCGCTAATG
47967607 CTCTTCATTT
Statistics
Matches: 97, Mismatches: 16, Indels: 8
0.80 0.13 0.07
Matches are distributed among these distances:
122 2 0.02
123 89 0.92
124 6 0.06
ACGTcount: A:0.18, C:0.18, G:0.27, T:0.37
Consensus pattern (123 bp):
GCTTTAGCGGCGATTTTATGGAAGCGCCGCTAATATTCTGGGATTTAGCGGCGTTTTTATGGAAG
CGCCGCTAATGTTATGTGCTTTAGCGGCGTTTTTATAAAAACACCGCTAATGTTCTGA
Found at i:47970810 original size:6 final size:6
Alignment explanation
Indices: 47970799--47970851 Score: 54
Period size: 6 Copynumber: 8.3 Consensus size: 6
47970789 AACTGTTTAT
*
47970799 TTGTTA TTGTTA TT-TCTCA TTGTTT TTGTTA TTTGTTA TTTGTTA TTGTTA
1 TTGTTA TTGTTA TTGT-T-A TTGTTA TTGTTA -TTGTTA -TTGTTA TTGTTA
47970850 TT
1 TT
47970852 TAACATGTGT
Statistics
Matches: 41, Mismatches: 2, Indels: 8
0.80 0.04 0.16
Matches are distributed among these distances:
5 1 0.02
6 22 0.54
7 17 0.41
8 1 0.02
ACGTcount: A:0.13, C:0.04, G:0.13, T:0.70
Consensus pattern (6 bp):
TTGTTA
Found at i:47970813 original size:13 final size:13
Alignment explanation
Indices: 47970795--47970852 Score: 82
Period size: 13 Copynumber: 4.5 Consensus size: 13
47970785 GTAGAACTGT
47970795 TTATTTGTTATTG
1 TTATTTGTTATTG
* *
47970808 TTATTTCTCATTG
1 TTATTTGTTATTG
47970821 TT-TTTGTTATTTG
1 TTATTTGTTA-TTG
47970834 TTATTTGTTATTG
1 TTATTTGTTATTG
47970847 TTATTT
1 TTATTT
47970853 AACATGTGTA
Statistics
Matches: 39, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
12 5 0.13
13 27 0.69
14 7 0.18
ACGTcount: A:0.14, C:0.03, G:0.12, T:0.71
Consensus pattern (13 bp):
TTATTTGTTATTG
Found at i:47970835 original size:7 final size:7
Alignment explanation
Indices: 47970795--47970852 Score: 70
Period size: 7 Copynumber: 8.9 Consensus size: 7
47970785 GTAGAACTGT
47970795 TTATTTG
1 TTATTTG
47970802 TTA-TTG
1 TTATTTG
*
47970808 TTATTTC
1 TTATTTG
*
47970815 TCA-TTG
1 TTATTTG
47970821 TT-TTTG
1 TTATTTG
47970827 TTATTTG
1 TTATTTG
47970834 TTATTTG
1 TTATTTG
47970841 TTA-TTG
1 TTATTTG
47970847 TTATTT
1 TTATTT
47970853 AACATGTGTA
Statistics
Matches: 43, Mismatches: 4, Indels: 8
0.78 0.07 0.15
Matches are distributed among these distances:
6 20 0.47
7 23 0.53
ACGTcount: A:0.14, C:0.03, G:0.12, T:0.71
Consensus pattern (7 bp):
TTATTTG
Found at i:47971640 original size:11 final size:11
Alignment explanation
Indices: 47971624--47971653 Score: 60
Period size: 11 Copynumber: 2.7 Consensus size: 11
47971614 GACTAATTGA
47971624 TATGGTGGTAT
1 TATGGTGGTAT
47971635 TATGGTGGTAT
1 TATGGTGGTAT
47971646 TATGGTGG
1 TATGGTGG
47971654 ACGCCTTCAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.17, C:0.00, G:0.40, T:0.43
Consensus pattern (11 bp):
TATGGTGGTAT
Found at i:47972215 original size:67 final size:66
Alignment explanation
Indices: 47972120--47972256 Score: 211
Period size: 67 Copynumber: 2.1 Consensus size: 66
47972110 GACCACAGTT
* *
47972120 GAGGTTCAAAAGAAATATGAAGAACTCCAGCTACAACTCAAAAGCAGATGCGACAGCGAGAGAAG
1 GAGGTTCAAAAGAAATATGAAGAACTCCAGCGACAACT-AAAAGCAGATGCGACAGCCAGAGAAG
47972185 CA
65 CA
* * * *
47972187 GAGGTTCAAAAGAAATATGAAGAACTCCAGCGACAACTTAAAGCTGATGCGGCATCCAGAGAAGC
1 GAGGTTCAAAAGAAATATGAAGAACTCCAGCGACAACTAAAAGCAGATGCGACAGCCAGAGAAGC
47972252 A
66 A
47972253 GAGG
1 GAGG
47972257 CTGCAGCGAG
Statistics
Matches: 64, Mismatches: 6, Indels: 1
0.90 0.08 0.01
Matches are distributed among these distances:
66 27 0.42
67 37 0.58
ACGTcount: A:0.42, C:0.19, G:0.26, T:0.13
Consensus pattern (66 bp):
GAGGTTCAAAAGAAATATGAAGAACTCCAGCGACAACTAAAAGCAGATGCGACAGCCAGAGAAGC
A
Found at i:47972678 original size:43 final size:43
Alignment explanation
Indices: 47972627--47972783 Score: 244
Period size: 43 Copynumber: 3.7 Consensus size: 43
47972617 AAAATTGCCA
47972627 CTAAAGAACATGATCTTTAGCGGCGTTTGTGTATAAAGCGCCG
1 CTAAAGAACATGATCTTTAGCGGCGTTTGTGTATAAAGCGCCG
* * *
47972670 CTAAAGAACATGATCTTTAGCGACGTTTGTGGA-AGTAGCGCCG
1 CTAAAGAACATGATCTTTAGCGGCGTTTGTGTATA-AAGCGCCG
* *
47972713 CTAAAGAACATGATTTTTAGTGGCGTTTGTGTATAAAGCGCCG
1 CTAAAGAACATGATCTTTAGCGGCGTTTGTGTATAAAGCGCCG
*
47972756 CTAAAGAACATGACCTTTAGCGGCGTTT
1 CTAAAGAACATGATCTTTAGCGGCGTTT
47972784 TTAAAGATAA
Statistics
Matches: 101, Mismatches: 11, Indels: 4
0.87 0.09 0.03
Matches are distributed among these distances:
42 1 0.01
43 99 0.98
44 1 0.01
ACGTcount: A:0.28, C:0.18, G:0.25, T:0.29
Consensus pattern (43 bp):
CTAAAGAACATGATCTTTAGCGGCGTTTGTGTATAAAGCGCCG
Found at i:47976318 original size:19 final size:21
Alignment explanation
Indices: 47976283--47976324 Score: 61
Period size: 19 Copynumber: 2.1 Consensus size: 21
47976273 CGTCATAAAA
*
47976283 ATATCATATATCATACATTAT
1 ATATCATATATCATACATAAT
47976304 ATATC-TATATC-TACATAAT
1 ATATCATATATCATACATAAT
47976323 AT
1 AT
47976325 GTATTATAAG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
19 9 0.45
20 6 0.30
21 5 0.25
ACGTcount: A:0.43, C:0.14, G:0.00, T:0.43
Consensus pattern (21 bp):
ATATCATATATCATACATAAT
Found at i:47976972 original size:16 final size:18
Alignment explanation
Indices: 47976951--47976988 Score: 53
Period size: 16 Copynumber: 2.2 Consensus size: 18
47976941 TTTAAATTGC
47976951 ATATTTAA-AAGAATA-A
1 ATATTTAACAAGAATAGA
*
47976967 ATATTTAACAATAATAGA
1 ATATTTAACAAGAATAGA
47976985 ATAT
1 ATAT
47976989 AAAAAGAAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
16 8 0.42
17 6 0.32
18 5 0.26
ACGTcount: A:0.58, C:0.03, G:0.05, T:0.34
Consensus pattern (18 bp):
ATATTTAACAAGAATAGA
Found at i:47977913 original size:18 final size:18
Alignment explanation
Indices: 47977890--47977928 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
47977880 TTTTATTCCC
*
47977890 TTTATATATTTAAATATA
1 TTTATAAATTTAAATATA
**
47977908 TTTATAAATTTTTATATA
1 TTTATAAATTTAAATATA
47977926 TTT
1 TTT
47977929 TTTCAAAATC
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (18 bp):
TTTATAAATTTAAATATA
Found at i:47978370 original size:40 final size:40
Alignment explanation
Indices: 47978320--47978434 Score: 135
Period size: 40 Copynumber: 2.9 Consensus size: 40
47978310 GTTTGGATAA
47978320 AAAACGCCGCTAAAGATCGAGCATTAGCGGCGCTTTTTGG
1 AAAACGCCGCTAAAGATCGAGCATTAGCGGCGCTTTTTGG
* ** * *
47978360 AAAACGCCGCTAAAGATCGAACATTAGCTACGCCTTATGG
1 AAAACGCCGCTAAAGATCGAGCATTAGCGGCGCTTTTTGG
* * * *
47978400 AAAAGGCCGCTAAAAAT-AAGCACTAGCGGCG-TTTT
1 AAAACGCCGCTAAAGATCGAGCATTAGCGGCGCTTTT
47978435 CCAAAAAGCG
Statistics
Matches: 61, Mismatches: 14, Indels: 2
0.79 0.18 0.03
Matches are distributed among these distances:
38 2 0.03
39 9 0.15
40 50 0.82
ACGTcount: A:0.33, C:0.23, G:0.23, T:0.21
Consensus pattern (40 bp):
AAAACGCCGCTAAAGATCGAGCATTAGCGGCGCTTTTTGG
Found at i:47978602 original size:41 final size:41
Alignment explanation
Indices: 47978490--47978620 Score: 149
Period size: 41 Copynumber: 3.2 Consensus size: 41
47978480 GGAGCTTTCA
*
47978490 GGGTTTTAGCGGCGTTTTTCAAAAAGCGCCGCTAATGGTCG
1 GGGTTTTAGCGGCGTTTTTCAAAAAGCGCCGCTAATGCTCG
* * * *
47978531 GGGCTTTAGCGGCG-CTTTCACAAAAACGCCGCAAATGCTC-
1 GGGTTTTAGCGGCGTTTTTCA-AAAAGCGCCGCTAATGCTCG
* * *
47978571 TGTTTTTAGCGGCGTTTTTCTAAAAAGCGCCGCTAATGCTCA
1 GGGTTTTAGCGGCGTTTTTC-AAAAAGCGCCGCTAATGCTCG
*
47978613 GGGATTTA
1 GGGTTTTA
47978621 AAATATTTGT
Statistics
Matches: 72, Mismatches: 14, Indels: 7
0.77 0.15 0.08
Matches are distributed among these distances:
40 16 0.22
41 50 0.69
42 6 0.08
ACGTcount: A:0.22, C:0.22, G:0.27, T:0.29
Consensus pattern (41 bp):
GGGTTTTAGCGGCGTTTTTCAAAAAGCGCCGCTAATGCTCG
Found at i:47979588 original size:14 final size:15
Alignment explanation
Indices: 47979571--47979612 Score: 61
Period size: 14 Copynumber: 2.9 Consensus size: 15
47979561 TATGGTTTAT
47979571 GGTTTAAGGGTT-GG
1 GGTTTAAGGGTTAGG
47979585 GGTTTAAGGGTTAGG
1 GGTTTAAGGGTTAGG
*
47979600 GG-TTAGGGGTTAG
1 GGTTTAAGGGTTAG
47979613 AAGTTAGGGG
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
14 22 0.85
15 4 0.15
ACGTcount: A:0.17, C:0.00, G:0.50, T:0.33
Consensus pattern (15 bp):
GGTTTAAGGGTTAGG
Found at i:47979604 original size:7 final size:7
Alignment explanation
Indices: 47979578--47979628 Score: 59
Period size: 7 Copynumber: 7.3 Consensus size: 7
47979568 TATGGTTTAA
47979578 GGGTT-G
1 GGGTTAG
*
47979584 GGGTTTAA
1 GGG-TTAG
47979592 GGGTTAG
1 GGGTTAG
47979599 GGGTTAG
1 GGGTTAG
47979606 GGGTTAG
1 GGGTTAG
**
47979613 AAGTTAG
1 GGGTTAG
47979620 GGGTTAG
1 GGGTTAG
47979627 GG
1 GG
47979629 TTTATGTTTT
Statistics
Matches: 37, Mismatches: 6, Indels: 3
0.80 0.13 0.07
Matches are distributed among these distances:
6 3 0.08
7 31 0.84
8 3 0.08
ACGTcount: A:0.18, C:0.00, G:0.53, T:0.29
Consensus pattern (7 bp):
GGGTTAG
Found at i:47979653 original size:7 final size:7
Alignment explanation
Indices: 47979564--47979683 Score: 50
Period size: 7 Copynumber: 17.0 Consensus size: 7
47979554 TATAGATTAT
*
47979564 GGTTTAT
1 GGTTTAG
47979571 GGTTTAAG
1 GGTTT-AG
*
47979579 GG-TTGG
1 GGTTTAG
47979585 GGTTTAAG
1 GGTTT-AG
47979593 GG-TTAG
1 GGTTTAG
*
47979599 GGGTTAG
1 GGTTTAG
*
47979606 GGGTTAG
1 GGTTTAG
*
47979613 AAG-TTAG
1 -GGTTTAG
*
47979620 GGGTTAG
1 GGTTTAG
*
47979627 GGTTTAT
1 GGTTTAG
* *
47979634 GTTTTAT
1 GGTTTAG
*
47979641 GATTTAG
1 GGTTTAG
47979648 GGTTTAAG
1 GGTTT-AG
* * *
47979656 AGATAAG
1 GGTTTAG
47979663 GG-TTAGG
1 GGTTTA-G
47979670 GGTTTAG
1 GGTTTAG
47979677 GGTTTAG
1 GGTTTAG
47979684 ATTAATTGAT
Statistics
Matches: 88, Mismatches: 16, Indels: 18
0.72 0.13 0.15
Matches are distributed among these distances:
6 10 0.11
7 64 0.73
8 14 0.16
ACGTcount: A:0.21, C:0.00, G:0.41, T:0.38
Consensus pattern (7 bp):
GGTTTAG
Found at i:47980082 original size:19 final size:20
Alignment explanation
Indices: 47980060--47980111 Score: 54
Period size: 20 Copynumber: 2.6 Consensus size: 20
47980050 TATATAAAAA
*
47980060 TTTTAAAATTTATC-TAATT
1 TTTTAAAATTTATCTTAAAT
*
47980079 TTTTTAAATATTA-CTTAAAT
1 TTTTAAAAT-TTATCTTAAAT
*
47980099 TTTCAAAATTTAT
1 TTTTAAAATTTAT
47980112 TTATTTAAAA
Statistics
Matches: 26, Mismatches: 4, Indels: 5
0.74 0.11 0.14
Matches are distributed among these distances:
19 12 0.46
20 14 0.54
ACGTcount: A:0.38, C:0.06, G:0.00, T:0.56
Consensus pattern (20 bp):
TTTTAAAATTTATCTTAAAT
Found at i:47985447 original size:16 final size:16
Alignment explanation
Indices: 47985426--47985461 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
47985416 TTTAATACTA
*
47985426 AATAATTTTTGATATT
1 AATAATGTTTGATATT
*
47985442 AATAATGTTTGATTTT
1 AATAATGTTTGATATT
47985458 AATA
1 AATA
47985462 TTTAATATTT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.39, C:0.00, G:0.08, T:0.53
Consensus pattern (16 bp):
AATAATGTTTGATATT
Found at i:47985651 original size:43 final size:43
Alignment explanation
Indices: 47985530--47985790 Score: 364
Period size: 43 Copynumber: 6.1 Consensus size: 43
47985520 GCTCTTGTGC
* * * * * *
47985530 CGTTTGT-GGAAAAGCGCCGCTAAAGGTCGTGATCTATAGCAG
1 CGTTTGTGGGTAAAGCGCCGCTAAAGATCATGTTCTTTAGCGG
* * * * *
47985572 CGTTTGTGAG-AAAGCGTCGCTAAAGGTCTTGATCTTTAGCGG
1 CGTTTGTGGGTAAAGCGCCGCTAAAGATCATGTTCTTTAGCGG
* *
47985614 TGTTTGTGAGTAAAGCGCCGCTAAAGATCATGTTCTTTAGCGG
1 CGTTTGTGGGTAAAGCGCCGCTAAAGATCATGTTCTTTAGCGG
*
47985657 CGTTTGAGGGTAAAGCGCCGCTAAAGATCATGTTCTTTAGCGG
1 CGTTTGTGGGTAAAGCGCCGCTAAAGATCATGTTCTTTAGCGG
* *
47985700 CGTTTGAGGGTAAAGCGCCGCTAAAGACCATGTTCTTTAGCGG
1 CGTTTGTGGGTAAAGCGCCGCTAAAGATCATGTTCTTTAGCGG
47985743 CGTTTGTGGGTAAAGCGCCGCTAAAGATCATGTTCTTTAGCGG
1 CGTTTGTGGGTAAAGCGCCGCTAAAGATCATGTTCTTTAGCGG
47985786 CGTTT
1 CGTTT
47985791 TTTATCATAA
Statistics
Matches: 201, Mismatches: 16, Indels: 3
0.91 0.07 0.01
Matches are distributed among these distances:
42 44 0.22
43 157 0.78
ACGTcount: A:0.23, C:0.18, G:0.30, T:0.29
Consensus pattern (43 bp):
CGTTTGTGGGTAAAGCGCCGCTAAAGATCATGTTCTTTAGCGG
Found at i:47985957 original size:23 final size:23
Alignment explanation
Indices: 47985931--47986000 Score: 70
Period size: 23 Copynumber: 2.9 Consensus size: 23
47985921 TTATGATGAT
*
47985931 AAACTAAAAATAATAATACAAGA
1 AAACTAAAAATAATAATACAAAA
*
47985954 AAAC-ATAAAATAATACATATAAAA
1 AAACTA-AAAATAATA-ATACAAAA
*
47985978 AAACTTTTAAAATAATAATACAA
1 AAAC--TAAAAATAATAATACAA
47986001 CAATAAATTT
Statistics
Matches: 38, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
22 1 0.03
23 13 0.34
24 10 0.26
25 5 0.13
26 9 0.24
ACGTcount: A:0.67, C:0.09, G:0.01, T:0.23
Consensus pattern (23 bp):
AAACTAAAAATAATAATACAAAA
Found at i:47994921 original size:21 final size:22
Alignment explanation
Indices: 47994884--47994957 Score: 71
Period size: 21 Copynumber: 3.4 Consensus size: 22
47994874 TACGAAACAT
* * *
47994884 AAGTGCCTA-AAATGACACACG
1 AAGTGCCTAGATACGACACACA
* *
47994905 AGGTGCCT-GATACGACACATA
1 AAGTGCCTAGATACGACACACA
*
47994926 AAGTGCCTGAGATACGACACATA
1 AAGTGCCT-AGATACGACACACA
47994949 AAGTGCCTA
1 AAGTGCCTA
47994958 ATCGGCAAAG
Statistics
Matches: 44, Mismatches: 6, Indels: 5
0.80 0.11 0.09
Matches are distributed among these distances:
21 22 0.50
22 1 0.02
23 21 0.48
ACGTcount: A:0.38, C:0.23, G:0.22, T:0.18
Consensus pattern (22 bp):
AAGTGCCTAGATACGACACACA
Found at i:47994943 original size:23 final size:23
Alignment explanation
Indices: 47994913--47994956 Score: 88
Period size: 23 Copynumber: 1.9 Consensus size: 23
47994903 CGAGGTGCCT
47994913 GATACGACACATAAAGTGCCTGA
1 GATACGACACATAAAGTGCCTGA
47994936 GATACGACACATAAAGTGCCT
1 GATACGACACATAAAGTGCCT
47994957 AATCGGCAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.39, C:0.23, G:0.20, T:0.18
Consensus pattern (23 bp):
GATACGACACATAAAGTGCCTGA
Found at i:47995310 original size:16 final size:16
Alignment explanation
Indices: 47995284--47995323 Score: 55
Period size: 16 Copynumber: 2.5 Consensus size: 16
47995274 TTAATAATAA
*
47995284 TACTTATCTTA-TATT
1 TACTTACCTTATTATT
47995299 TCACTTACCTTATTATT
1 T-ACTTACCTTATTATT
47995316 TACTTACC
1 TACTTACC
47995324 ATACACATAA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
15 1 0.05
16 16 0.73
17 5 0.23
ACGTcount: A:0.25, C:0.23, G:0.00, T:0.53
Consensus pattern (16 bp):
TACTTACCTTATTATT
Found at i:48008476 original size:25 final size:25
Alignment explanation
Indices: 48008447--48008514 Score: 84
Period size: 25 Copynumber: 2.7 Consensus size: 25
48008437 ACTGATACTT
* * *
48008447 AGCTCGCATGAGCTTCCCGTTATTC
1 AGCTCGAAAGAGCTTACCGTTATTC
*
48008472 TGCTCGAAAGAGCTTACCGTTATTC
1 AGCTCGAAAGAGCTTACCGTTATTC
48008497 AGCTC-AGAAGAGCTTACC
1 AGCTCGA-AAGAGCTTACC
48008515 ATTTAAAGCT
Statistics
Matches: 37, Mismatches: 5, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
24 1 0.03
25 36 0.97
ACGTcount: A:0.24, C:0.28, G:0.21, T:0.28
Consensus pattern (25 bp):
AGCTCGAAAGAGCTTACCGTTATTC
Found at i:48008531 original size:24 final size:24
Alignment explanation
Indices: 48008473--48008533 Score: 61
Period size: 25 Copynumber: 2.5 Consensus size: 24
48008463 CCGTTATTCT
* **
48008473 GCTCGAAAGAGCTTACCGTTATTCA
1 GCTCG-AAGAGCTTACCATTATAAA
48008498 GCTCAGAAGAGCTTACCATT-TAAA
1 GCTC-GAAGAGCTTACCATTATAAA
48008522 GCTCGTAAGAGC
1 GCTCG-AAGAGC
48008534 ATACTGATTC
Statistics
Matches: 31, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
23 1 0.03
24 12 0.39
25 17 0.55
26 1 0.03
ACGTcount: A:0.31, C:0.23, G:0.21, T:0.25
Consensus pattern (24 bp):
GCTCGAAGAGCTTACCATTATAAA
Found at i:48015661 original size:26 final size:26
Alignment explanation
Indices: 48015625--48015677 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
48015615 CTGATCAAAA
48015625 AGGGGTTGCTAAGTGCAGATTCCCCG
1 AGGGGTTGCTAAGTGCAGATTCCCCG
*
48015651 AGGGGTTGCTAAGTGCTGATTCCCCG
1 AGGGGTTGCTAAGTGCAGATTCCCCG
48015677 A
1 A
48015678 ATTATTGATT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.19, C:0.23, G:0.34, T:0.25
Consensus pattern (26 bp):
AGGGGTTGCTAAGTGCAGATTCCCCG
Found at i:48015706 original size:42 final size:42
Alignment explanation
Indices: 48015654--48015804 Score: 162
Period size: 42 Copynumber: 3.6 Consensus size: 42
48015644 TTCCCCGAGG
* *
48015654 GGTTGCTAAGTGCTGATTCC-CCGAATTATTGATTCTAAATGT
1 GGTTGCTAAGTGCTGATTCCACCGAATCATTGATTATAAA-GT
* * * * *
48015696 GGTTGATAAGTGCTGATTCCACCGTATCCTTGATTGTGAAAGG
1 GGTTGCTAAGTGCTGATTCCACCGAATCATTGATTAT-AAAGT
* * * * *
48015739 GGTTGCTATGTGCTGATTCC-CCGTATCACTGAATATAAGGT
1 GGTTGCTAAGTGCTGATTCCACCGAATCATTGATTATAAAGT
48015780 GGTTGCTAAGTGCTGATTCCACCGA
1 GGTTGCTAAGTGCTGATTCCACCGA
48015805 GTAACGGTTA
Statistics
Matches: 90, Mismatches: 16, Indels: 6
0.80 0.14 0.05
Matches are distributed among these distances:
41 22 0.24
42 34 0.38
43 31 0.34
44 3 0.03
ACGTcount: A:0.23, C:0.19, G:0.25, T:0.34
Consensus pattern (42 bp):
GGTTGCTAAGTGCTGATTCCACCGAATCATTGATTATAAAGT
Found at i:48022195 original size:638 final size:619
Alignment explanation
Indices: 48020923--48022230 Score: 1590
Period size: 639 Copynumber: 2.1 Consensus size: 619
48020913 ACAATTATTT
*
48020923 TTTACAATTATCAACCATTTTTTTAAAATCAA-GTGTCCATTGCTGATAACAATGACTCTGATTT
1 TTTACAATTATCAACCATTTTTTTGAAATCAAGGTGTCCATT-CTGATAACAATGACTCTGATTT
* *
48020987 GACCTCCAACTTGGACGAATGTAGAAGCAAATATCAATGGAACCCCTACTCCTAATGAAAAAATG
65 GACCTCCAACTTGGACAAATGTAGAAGAAAATATCAATGGAACCCCTACTCCTAATGAAAAAATG
* * * *
48021052 TAAAAGTAAATATGAAAGGGTCCCCTCTCCCAACACCGCCTAATATATTTTTACTACTCACAATT
130 CAAAAGCAAATATGAAAGGGTCCCCTATCCCAACACCGCCTAATATATTATTACTACTCACAATT
** * * * *
48021117 ATCCTTTTTTTTTTGTCAAAGCCATTGTGTTCATTTTCGGTAGCAATCACTAATCCCTTCGTCGT
195 ATCCGATTTTTTTTGTCAAAACCACTATGTTCATTTTCGATAGCAATCACTAATCCCTTCGTCGT
* * * *
48021182 AGATGCTCTTAAAAAAAGTAAACAGTGGCCATGAAATATGCTTCATTCCCATGTGCTGGGATCCA
260 AGATGCTCTTAAAAAAACTAAACAGTGGCCATGAAATATGCTCCATTCCCATGGGCTGCGATCCA
* * ** *
48021247 ACTCCCAACCTCATAATTAAGGGATTAGTTGAGCAAAGGCCACATCATTAATAATAACAAAGTTC
325 ACTCCCAACCTCATAATTAAGGGATTAGGTGAGCAAAGACCACAAAATTAATAATAACAAAGTTA
* * * *
48021312 AAATGCCATCACTATTTTTTTTTTTGAAACAAAGAAAAAAATAGAAAAGCTATTTTGTTTTATAA
390 AAATGCCATCACTATATTATTTTTAGAAACAAAGAAAAAAATAGAAAAGCTAGTTTGTTTTATAA
* * *
48021377 TAGAAATGGGATTTTGGTATTTAAGGAGTAGTTAGATGAAAATGGCTAAACGCTATGGGAATTAT
455 TAGAAATGGAAATTTGGTATTTAAGGAGTAGTTAGATGAAAATGGCTAAACGATATGGGAATTAT
** * * * ** * *
48021442 TGTAAGAGAAGGTTGTGAAAGCAAATATGGAAGGTTTCGTCACTCTTGTCGCTACCAAACTCATA
520 CATAAGAGAAGGTTATGAAAGCAAATATGAAAGATCCCCTCACTCCTGTCGCTACCAAACTCATA
* * *
48021507 TACAAATTTGATTACTCACAGTATTACTATTATTA
585 TACAAATTTCATTACTCACAATATTACTATTACTA
* *
48021542 TTTACAATTATCAACCATTTTTTTGTTGAAATCAAGGTGTCCGATTCTGATAACAATGATTTTGA
1 TTTACAATTATCAACCA--TTTTT-TTGAAATCAAGGTGTCC-ATTCTGATAACAATGACTCTGA
* * *
48021607 TTTGACCTCTAACTTGGACAAATGTAGAAGAAAAATATCAATGGATCCCCTACTCCTAATGGAAA
62 TTTGACCTCCAACTTGGACAAATGTAGAAG-AAAATATCAATGGAACCCCTACTCCTAATGAAAA
* ** ** *
48021672 AATGCAAAAGCAGATATGAAAGGGTGGGGACGCCGCTTAATATATTCAA-ATTTGACTACTCATG
126 AATGCAAAAGCAAATATGAAAGGGT-----C-CC-C----TAT-CCCAACA-CCG-C--CTAAT-
* * * *
48021736 ATATTATTATTATTCATAATTAT-CGATTTTTTTTGTCAAAATCACTATGTTCATTATT-GATAG
174 ATATTATTACTACTCACAATTATCCGATTTTTTTTGTCAAAACCACTATGTTCATT-TTCGATAG
* * * * * * * *
48021799 CACTGACTAATCCCTTTGTCGTGGGTGCTCTTCAAAAACCTAAACAGTGGCCATGAAATGTGCTC
238 CAATCACTAATCCCTTCGTCGTAGATGCTCTTAAAAAAACTAAACAGTGGCCATGAAATATGCTC
*
48021864 CATTCCCATGGGCTGCGATCCAACTTCCAACCTCATAATTAAGGGATTAGGTGAGCAACA-ACCA
303 CATTCCCATGGGCTGCGATCCAACTCCCAACCTCATAATTAAGGGATTAGGTGAGCAA-AGACCA
* * * *
48021928 CAAAATTATTAATAGCACATTTAAAATGCCATCA-T-TATTATTTTTAGAAACAAAGAAATAAAC
367 CAAAATTAATAATAACAAAGTTAAAATGCCATCACTATATTATTTTTAGAAACAAAGAAA-AAA-
48021991 AT-G-AAAGCTAGTTTGTTTTATAATAGAAATGTGAAATTTGGTATTTAAGGAGTAGTTAGATGA
430 ATAGAAAAGCTAGTTTGTTTTATAATAGAAATG-GAAATTTGGTATTTAAGGAGTAGTTAGATGA
* **
48022054 AAATGGCTAAACGATATTGGAATTATCATAAGAGAATTTTATGAAAGCAAATATGAAAGATCCCC
494 AAATGGCTAAACGATATGGGAATTATCATAAGAGAAGGTTATGAAAGCAAATATGAAAGATCCCC
* * * * *
48022119 TCACTCCTGTCGCTGCCAAACTTATATTCAAATTTCATTGCTCCCAATATTACTATTACTA
559 TCACTCCTGTCGCTACCAAACTCATATACAAATTTCATTACTCACAATATTACTATTACTA
*
48022180 TTTACAATTATCAACCATTTTTTTGAAATCAGGGTGTCCACTTCTGATAAC
1 TTTACAATTATCAACCATTTTTTTGAAATCAAGGTGTCCA-TTCTGATAAC
48022231 GTAATACCCC
Statistics
Matches: 582, Mismatches: 78, Indels: 42
0.83 0.11 0.06
Matches are distributed among these distances:
619 17 0.03
621 5 0.01
622 9 0.02
623 51 0.09
624 56 0.10
629 1 0.00
630 2 0.00
631 1 0.00
634 1 0.00
635 29 0.05
636 9 0.02
637 48 0.08
638 156 0.27
639 175 0.30
640 22 0.04
ACGTcount: A:0.35, C:0.17, G:0.15, T:0.33
Consensus pattern (619 bp):
TTTACAATTATCAACCATTTTTTTGAAATCAAGGTGTCCATTCTGATAACAATGACTCTGATTTG
ACCTCCAACTTGGACAAATGTAGAAGAAAATATCAATGGAACCCCTACTCCTAATGAAAAAATGC
AAAAGCAAATATGAAAGGGTCCCCTATCCCAACACCGCCTAATATATTATTACTACTCACAATTA
TCCGATTTTTTTTGTCAAAACCACTATGTTCATTTTCGATAGCAATCACTAATCCCTTCGTCGTA
GATGCTCTTAAAAAAACTAAACAGTGGCCATGAAATATGCTCCATTCCCATGGGCTGCGATCCAA
CTCCCAACCTCATAATTAAGGGATTAGGTGAGCAAAGACCACAAAATTAATAATAACAAAGTTAA
AATGCCATCACTATATTATTTTTAGAAACAAAGAAAAAAATAGAAAAGCTAGTTTGTTTTATAAT
AGAAATGGAAATTTGGTATTTAAGGAGTAGTTAGATGAAAATGGCTAAACGATATGGGAATTATC
ATAAGAGAAGGTTATGAAAGCAAATATGAAAGATCCCCTCACTCCTGTCGCTACCAAACTCATAT
ACAAATTTCATTACTCACAATATTACTATTACTA
Found at i:48026150 original size:634 final size:634
Alignment explanation
Indices: 48024580--48026228 Score: 2002
Period size: 634 Copynumber: 2.6 Consensus size: 634
48024570 GGGCATTACA
* * * *
48024580 GATAACAATGACTCTAATTAGACGTCCAACTTGGACAAATGTAGAAGCAAATATCTATGGATCCC
1 GATAACAATGACTCTAATTTGACCTCCAACTTGAACAAATGTAGAAGCAAATATCAATGGATCCC
* * * * * *
48024645 TTACTCCTAATGGACAAATATGAAAGCATATATGAAAGGGTCCCCACTCCCAACGCTGCCTAATA
66 CTACTCCTAATGGACAAATGTAAAAGCAAATATCAAAAGGTCCCCACTCCCAACGCTGCCTAATA
*
48024710 TATTCAAATTTGACTACTCACAATATTATTATTATTATTCACAATTATCAATATTTTTTTGTCAA
131 TATTCAAATTTGACTACT--C---A-TAGTATTATTATTCACAATTATCAATATTTTTTTGTCAA
* * *
48024775 AATCA-CATTGTTCATTGTCGGTAGCAATGTCTAATCCCTTCGTCTTGGGTGCTATTAAAAAAAG
190 AATCAGGA-TGTTCATTGTCGATAGCAATGACTAATCCCTTCGTCTTGGGTGCTATTAAAAAAAG
* * * **
48024839 TAAACAGTGGCCATGAAATGTGCTCCATTCCCATGGGCTAGGATCCAACTCCTAACCTCATAATT
254 TAAACGGTGACCATGAAATGTGCTCCATTCCCATGAGCGGGGATCCAACTCC-AACCTCATAATT
* *
48024904 AAAGGATTAGGTGAGCAACGACCACACCATTATTAATAACACAGTTAAAAG--TC--T-TG----
318 AAA-GATTAGGTGAGTAACGACCACACCATTATTAATAACACAGTTAAATGCATCATTATGTTTT
* ** *
48024960 TTTTCTAAATAAAGAAAAAAACACGAAAGCTATTTTGTTTTATAATAGAAATGGGAAATTTGGAA
382 TTTTCTAAACAAAGAAAAAAACACGAAAAATATTTTGTTTTATAATAGAAAAGGGAAATTTGGAA
* *
48025025 TTTAAGGAGTAGTTAGATGAAAATGGCTAAACGATATTGGAATTATCATAATAAAAGGTTGTAAA
447 TTTAAGGAGTAGTTAGATGAAAATCGCTAAACGATATGGGAATTATCATAATAAAAGGTTGTAAA
* * * * *
48025090 CGCAATTATGAAAGGTCCCCTCACTACCGTCTCTGCTAAACTCATATTCAAATTTGATTACTCAT
512 AGCAATTATGAAA-GT---CT--CTACCGACGCTGCCAAACTCATATTCAAATTTGATTACTCAG
* *
48025155 AGTATTACTATTATTATTTACAATTATCAACCATTTTTTTTGTTGAAATCAAGGTGTCCAATGTT
571 AGTATTACTATTATTATTTACAATTATCAACCA-TTTTTTTGTTAAAATCAAGGTGTCCAATGCT
* * * *
48025220 GATAACAATGACTCTTATTTGACCTCCAACTT-AGACAAAGGTAGAAACAAATATCAGTGGATCC
1 GATAACAATGACTCTAATTTGACCTCCAACTTGA-ACAAATGTAGAAGCAAATATCAATGGATCC
* * * * *
48025284 CCTACTCCTAATGGACAAATGTAAAAGAAAATATTAAATGGTCACCACTCCCAACGCTACCTAAT
65 CCTACTCCTAATGGACAAATGTAAAAGCAAATATCAAAAGGTCCCCACTCCCAACGCTGCCTAAT
* * *
48025349 ATATGCAAAATTT-ACTACTCATAGTATTATTATTCATAATTATAAATATTTTTTTGTCAAAATC
130 ATATTC-AAATTTGACTACTCATAGTATTATTATTCACAATTATCAATATTTTTTTGTCAAAATC
* * ** * *
48025413 ATGG-TGTTCATTGTCGATAGCAATGACTACTCTCTTTAT-TGTGGGTGATGTTAAAAAAAGTAA
194 A-GGATGTTCATTGTCGATAGCAATGACTAATCCCTTCGTCT-TGGGTGCTATTAAAAAAAGTAA
* *
48025476 ACGGT-AGCCATGAAATGTGATCCATTTCCAT-AGGCGGGGATCCAACTCCAAACCTCATAATTA
257 ACGGTGA-CCATGAAATGTGCTCCATTCCCATGA-GCGGGGATCCAACTCC-AACCTCATAATTA
48025539 AGAGATTAGGTGAGTAACGACCACACCATTATTAATAACACAGTTAAGATGCTATCATTATGTTT
319 A-AGATTAGGTGAGTAACGACCACACCATTATTAATAACACAGTTAA-ATGC-ATCATTATGTTT
*
48025604 TTTTTCTAAACAAAGAAAAAAACACGAAAAATATTTT-TTTTATAATAGAAAAGGGAAATTTGGG
381 TTTTTCTAAACAAAGAAAAAAACACGAAAAATATTTTGTTTTATAATAGAAAAGGGAAATTTGGA
* * * *
48025668 ATTTAATGAGTAGTTAGATGAAAATCGCTAAACGATCTGGGAATTTTCATAATAGAAGGTTGTAA
446 ATTTAAGGAGTAGTTAGATGAAAATCGCTAAACGATATGGGAATTATCATAATAAAAGGTTGTAA
* *
48025733 AAGTAA-TATGAAA-T-T-TCCCGACGCTGCCAAACTCATATTCAAATTTGATTACTCACGA-TA
511 AAGCAATTATGAAAGTCTCTACCGACGCTGCCAAACTCATATTCAAATTTGATTACTCA-GAGTA
* *
48025793 TTACTATTATTATTTACAATTATCGACCA-TTTTTTGTTAAAAT-AAGGGTGTCCACTGCT
575 TTACTATTATTATTTACAATTATCAACCATTTTTTTGTTAAAATCAA-GGTGTCCAATGCT
* * * * * *
48025852 GATAGCAATGACTCTGATTTGACCTCCCAGTTGAACAAATGTAGAAGCAAATATCAAAGGGTCCC
1 GATAACAATGACTCTAATTTGACCTCCAACTTGAACAAATGTAGAAGCAAATATCAATGGATCCC
* *
48025917 CTACTCGTAATGGACAAATGTAAAAGCAAATATCAAAAGGTCCCCCCACTCCCAACGTTGCCTAA
66 CTACTCCTAATGGACAAATGTAAAAGCAAATATCAAAAGGT--CCCCACTCCCAACGCTGCCTAA
* *
48025982 TATATTCAAATTTGATTACTCATAGCATTATTATTCACAATTATCAATATTTTTTTGTCAAAATC
129 TATATTCAAATTTGACTACTCATAGTATTATTATTCACAATTATCAATATTTTTTTGTCAAAATC
* * * * *
48026047 AGGATGTTCATTGTCGATAGTAATGACTAATCCCTTCGTCTCGGGTGCTCTTCAAAAAAGTAAAT
194 AGGATGTTCATTGTCGATAGCAATGACTAATCCCTTCGTCTTGGGTGCTATTAAAAAAAGTAAAC
* * *
48026112 GGTGACCATGAAATGTGCTGCATTCCCATGAACGGGGATACAACTTCCAA-C-C--------A-A
259 GGTGACCATGAAATGTGCTCCATTCCCATGAGCGGGGATCCAAC-TCCAACCTCATAATTAAAGA
* *
48026166 TTAGGTGAGTAACGACCACACCATTATTAATAACACAATTAAAATGCCATAATTAT-TTTTTTT
323 TTAGGTGAGTAACGACCACACCATTATTAATAACACAGTT-AAATG-CATCATTATGTTTTTTT
48026229 ATACACCAAG
Statistics
Matches: 877, Mismatches: 100, Indels: 83
0.83 0.09 0.08
Matches are distributed among these distances:
621 7 0.01
622 50 0.06
623 4 0.00
631 2 0.00
632 116 0.13
633 11 0.01
634 412 0.47
635 11 0.01
637 1 0.00
638 3 0.00
640 123 0.14
641 9 0.01
643 7 0.01
644 88 0.10
645 33 0.04
ACGTcount: A:0.36, C:0.18, G:0.15, T:0.32
Consensus pattern (634 bp):
GATAACAATGACTCTAATTTGACCTCCAACTTGAACAAATGTAGAAGCAAATATCAATGGATCCC
CTACTCCTAATGGACAAATGTAAAAGCAAATATCAAAAGGTCCCCACTCCCAACGCTGCCTAATA
TATTCAAATTTGACTACTCATAGTATTATTATTCACAATTATCAATATTTTTTTGTCAAAATCAG
GATGTTCATTGTCGATAGCAATGACTAATCCCTTCGTCTTGGGTGCTATTAAAAAAAGTAAACGG
TGACCATGAAATGTGCTCCATTCCCATGAGCGGGGATCCAACTCCAACCTCATAATTAAAGATTA
GGTGAGTAACGACCACACCATTATTAATAACACAGTTAAATGCATCATTATGTTTTTTTTCTAAA
CAAAGAAAAAAACACGAAAAATATTTTGTTTTATAATAGAAAAGGGAAATTTGGAATTTAAGGAG
TAGTTAGATGAAAATCGCTAAACGATATGGGAATTATCATAATAAAAGGTTGTAAAAGCAATTAT
GAAAGTCTCTACCGACGCTGCCAAACTCATATTCAAATTTGATTACTCAGAGTATTACTATTATT
ATTTACAATTATCAACCATTTTTTTGTTAAAATCAAGGTGTCCAATGCT
Found at i:48029934 original size:13 final size:13
Alignment explanation
Indices: 48029918--48029949 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
48029908 ATATTTGTCC
*
48029918 ACCCAATTTTTTT
1 ACCCAATTTTTGT
48029931 ACCCAATTTTTGT
1 ACCCAATTTTTGT
48029944 ACCCAA
1 ACCCAA
48029950 AAAATAGTTA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.28, C:0.28, G:0.03, T:0.41
Consensus pattern (13 bp):
ACCCAATTTTTGT
Found at i:48031163 original size:15 final size:15
Alignment explanation
Indices: 48031126--48031173 Score: 69
Period size: 15 Copynumber: 3.1 Consensus size: 15
48031116 TAATTACGGA
48031126 ATAGACTTTAAAAGG
1 ATAGACTTTAAAAGG
**
48031141 ATTAGACTTTAAATTG
1 A-TAGACTTTAAAAGG
48031157 ATAGACTTTAAAAGG
1 ATAGACTTTAAAAGG
48031172 AT
1 AT
48031174 TAGATTGTAA
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
15 15 0.54
16 13 0.46
ACGTcount: A:0.44, C:0.06, G:0.17, T:0.33
Consensus pattern (15 bp):
ATAGACTTTAAAAGG
Found at i:48031164 original size:31 final size:31
Alignment explanation
Indices: 48031126--48031186 Score: 106
Period size: 31 Copynumber: 2.0 Consensus size: 31
48031116 TAATTACGGA
48031126 ATAGACTTTAAAAGGATTAGACTT-TAAATTG
1 ATAGACTTTAAAAGGATTAGA-TTGTAAATTG
48031157 ATAGACTTTAAAAGGATTAGATTGTAAATT
1 ATAGACTTTAAAAGGATTAGATTGTAAATT
48031187 TAATTAAACT
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
30 2 0.07
31 27 0.93
ACGTcount: A:0.43, C:0.05, G:0.16, T:0.36
Consensus pattern (31 bp):
ATAGACTTTAAAAGGATTAGATTGTAAATTG
Found at i:48031184 original size:16 final size:16
Alignment explanation
Indices: 48031127--48031177 Score: 77
Period size: 16 Copynumber: 3.2 Consensus size: 16
48031117 AATTACGGAA
48031127 TAGACTTTAAAAGGAT
1 TAGACTTTAAAAGGAT
**
48031143 TAGACTTTAAATTGA-
1 TAGACTTTAAAAGGAT
48031158 TAGACTTTAAAAGGAT
1 TAGACTTTAAAAGGAT
48031174 TAGA
1 TAGA
48031178 TTGTAAATTT
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
15 13 0.43
16 17 0.57
ACGTcount: A:0.43, C:0.06, G:0.18, T:0.33
Consensus pattern (16 bp):
TAGACTTTAAAAGGAT
Found at i:48036797 original size:21 final size:22
Alignment explanation
Indices: 48036755--48036807 Score: 58
Period size: 20 Copynumber: 2.5 Consensus size: 22
48036745 ACCCCACTTT
*
48036755 ACCAGATTTT-TAACCATCAAA
1 ACCATATTTTATAACCATCAAA
*
48036776 ACACTTATTTTATAACC-T-AAA
1 AC-CATATTTTATAACCATCAAA
48036797 ACCATATTTTA
1 ACCATATTTTA
48036808 CCTTTAGTTT
Statistics
Matches: 27, Mismatches: 3, Indels: 5
0.77 0.09 0.14
Matches are distributed among these distances:
20 8 0.30
21 7 0.26
22 7 0.26
23 5 0.19
ACGTcount: A:0.42, C:0.21, G:0.02, T:0.36
Consensus pattern (22 bp):
ACCATATTTTATAACCATCAAA
Found at i:48041155 original size:24 final size:23
Alignment explanation
Indices: 48041122--48041246 Score: 78
Period size: 24 Copynumber: 5.3 Consensus size: 23
48041112 ATTTATACAA
*
48041122 AAAATTGGAAAGCATCAATATGCTC
1 AAAA-TGGAAAGCAT-AATATACTC
*
48041147 AAAATGGAAAG-A-ATTATACATC
1 AAAATGGAAAGCATAATATAC-TC
* * *
48041169 AAAATGGATAGCTTTAATATGCTC
1 AAAATGGAAAGC-ATAATATACTC
* *
48041193 AAATTGGATAGCAT--TATACATC
1 AAAATGGAAAGCATAATATAC-TC
* * *
48041215 AAATTGGACAGCAACAATATACTC
1 AAAATGGAAAGC-ATAATATACTC
48041239 AAAATGGA
1 AAAATGGA
48041247 CAACATTATA
Statistics
Matches: 80, Mismatches: 12, Indels: 17
0.73 0.11 0.16
Matches are distributed among these distances:
21 9 0.11
22 25 0.31
23 3 0.04
24 29 0.36
25 14 0.17
ACGTcount: A:0.46, C:0.14, G:0.15, T:0.26
Consensus pattern (23 bp):
AAAATGGAAAGCATAATATACTC
Found at i:48041219 original size:22 final size:22
Alignment explanation
Indices: 48041145--48041227 Score: 78
Period size: 22 Copynumber: 3.7 Consensus size: 22
48041135 ATCAATATGC
* *
48041145 TCAAAATGGAAAGAATTATACA
1 TCAAAATGGATAGCATTATACA
*
48041167 TCAAAATGGATAGCTTTAATATGC-
1 TCAAAATGGATAGCATT-ATA--CA
*
48041191 TCAAATTGGATAGCATTATACA
1 TCAAAATGGATAGCATTATACA
* *
48041213 TCAAATTGGACAGCA
1 TCAAAATGGATAGCA
48041228 ACAATATACT
Statistics
Matches: 51, Mismatches: 6, Indels: 8
0.78 0.09 0.12
Matches are distributed among these distances:
21 1 0.02
22 28 0.55
23 6 0.12
24 15 0.29
25 1 0.02
ACGTcount: A:0.43, C:0.13, G:0.16, T:0.28
Consensus pattern (22 bp):
TCAAAATGGATAGCATTATACA
Found at i:48041254 original size:46 final size:46
Alignment explanation
Indices: 48041104--48041256 Score: 164
Period size: 46 Copynumber: 3.3 Consensus size: 46
48041094 TACCCCGTTT
**
48041104 TGGACAACATTTATACAAAAAATTGGAAAGCATCAATATGCTCAAAA
1 TGGACAACA-TTATACATCAAATTGGAAAGCATCAATATGCTCAAAA
* * * * * *
48041151 TGGA-AAGAATTATACATCAAAATGGATAGCTTTAATATGCTCAAAT
1 TGGACAA-CATTATACATCAAATTGGAAAGCATCAATATGCTCAAAA
* * * * *
48041197 TGGATAGCATTATACATCAAATTGGACAGCAACAATATACTCAAAA
1 TGGACAACATTATACATCAAATTGGAAAGCATCAATATGCTCAAAA
48041243 TGGACAACATTATA
1 TGGACAACATTATA
48041257 ACATATAAAA
Statistics
Matches: 85, Mismatches: 19, Indels: 5
0.78 0.17 0.05
Matches are distributed among these distances:
46 79 0.93
47 6 0.07
ACGTcount: A:0.46, C:0.14, G:0.14, T:0.26
Consensus pattern (46 bp):
TGGACAACATTATACATCAAATTGGAAAGCATCAATATGCTCAAAA
Found at i:48045564 original size:15 final size:13
Alignment explanation
Indices: 48045539--48045582 Score: 52
Period size: 13 Copynumber: 3.2 Consensus size: 13
48045529 TGTTTGGCAC
48045539 TTCTCCTTTTTTTT
1 TTCT-CTTTTTTTT
48045553 TCCTCTCTTTTTTTT
1 T--TCTCTTTTTTTT
*
48045568 TTTTCTTTTTTTT
1 TTCTCTTTTTTTT
48045581 TT
1 TT
48045583 TAGAAAACAT
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
13 13 0.48
14 1 0.04
15 10 0.37
16 3 0.11
ACGTcount: A:0.00, C:0.18, G:0.00, T:0.82
Consensus pattern (13 bp):
TTCTCTTTTTTTT
Found at i:48045583 original size:15 final size:15
Alignment explanation
Indices: 48045544--48045581 Score: 53
Period size: 13 Copynumber: 2.7 Consensus size: 15
48045534 GGCACTTCTC
48045544 CTTTTTTTTTCCTCT
1 CTTTTTTTTTCCTCT
*
48045559 CTTTTTTTTT--TTT
1 CTTTTTTTTTCCTCT
48045572 CTTTTTTTTT
1 CTTTTTTTTT
48045582 TTAGAAAACA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
13 12 0.55
15 10 0.45
ACGTcount: A:0.00, C:0.16, G:0.00, T:0.84
Consensus pattern (15 bp):
CTTTTTTTTTCCTCT
Found at i:48046170 original size:15 final size:15
Alignment explanation
Indices: 48046146--48046175 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
48046136 AACCAAAAAA
48046146 AAAAAAAAAGATAAG
1 AAAAAAAAAGATAAG
*
48046161 AAAAAGAAAGATAAG
1 AAAAAAAAAGATAAG
48046176 CACATCAGTA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.77, C:0.00, G:0.17, T:0.07
Consensus pattern (15 bp):
AAAAAAAAAGATAAG
Found at i:48049057 original size:42 final size:44
Alignment explanation
Indices: 48048992--48049076 Score: 122
Period size: 43 Copynumber: 2.0 Consensus size: 44
48048982 GCAGGCCACC
48048992 TAAAATATACTATCTAAAGAAGTAA-TTTATT-ATTTAATTTAAT
1 TAAAATATACTATCTAAAGAAGTAATTTTATTAATTT-ATTTAAT
* *
48049035 TAAAATATAGT-TCTAAATAAGTAATTTTATTAATTTATTTAA
1 TAAAATATACTATCTAAAGAAGTAATTTTATTAATTTATTTAA
48049077 ACATAAATTA
Statistics
Matches: 38, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
42 12 0.32
43 22 0.58
44 4 0.11
ACGTcount: A:0.46, C:0.04, G:0.05, T:0.46
Consensus pattern (44 bp):
TAAAATATACTATCTAAAGAAGTAATTTTATTAATTTATTTAAT
Found at i:48049699 original size:8 final size:8
Alignment explanation
Indices: 48049688--48049731 Score: 52
Period size: 8 Copynumber: 5.1 Consensus size: 8
48049678 TATATTTAAA
48049688 TATATTTT
1 TATATTTT
*
48049696 TATATATT
1 TATATTTT
48049704 TATATTTTT
1 TATA-TTTT
48049713 TATAAATTTT
1 TAT--ATTTT
48049723 TATATTTT
1 TATATTTT
48049731 T
1 T
48049732 TTTTCAAAAT
Statistics
Matches: 31, Mismatches: 2, Indels: 6
0.79 0.05 0.15
Matches are distributed among these distances:
8 17 0.55
9 6 0.19
10 7 0.23
11 1 0.03
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (8 bp):
TATATTTT
Found at i:48049733 original size:10 final size:9
Alignment explanation
Indices: 48049673--48049732 Score: 50
Period size: 10 Copynumber: 6.4 Consensus size: 9
48049663 GTTTTAGTGA
48049673 TTTTATATAT
1 TTTTATAT-T
**
48049683 TTAAATATAT
1 TTTTATAT-T
48049693 TTTTATA-T
1 TTTTATATT
*
48049701 ATTTATATT
1 TTTTATATT
*
48049710 TTTTATAAAT
1 TTTTAT-ATT
48049720 TTTTATATT
1 TTTTATATT
48049729 TTTT
1 TTTT
48049733 TTTCAAAATA
Statistics
Matches: 40, Mismatches: 8, Indels: 5
0.75 0.15 0.09
Matches are distributed among these distances:
8 7 0.17
9 12 0.30
10 21 0.52
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (9 bp):
TTTTATATT
Found at i:48050785 original size:31 final size:31
Alignment explanation
Indices: 48050726--48050815 Score: 114
Period size: 31 Copynumber: 2.9 Consensus size: 31
48050716 TATGTGATAG
* * *
48050726 TACAGGGTTTGAATATG-AAATATTAATGA-
1 TACATGGTATGAATATGAAAATATGAATGAT
48050755 TA-ATAGGATATGAATATGAAAATATGAATGAT
1 TACAT-GG-TATGAATATGAAAATATGAATGAT
48050787 TACATGGTATGAATATGAAAATATGAATG
1 TACATGGTATGAATATGAAAATATGAATG
48050816 GTTGATACCA
Statistics
Matches: 53, Mismatches: 3, Indels: 8
0.83 0.05 0.12
Matches are distributed among these distances:
28 1 0.02
29 4 0.08
30 9 0.17
31 33 0.62
32 4 0.08
33 2 0.04
ACGTcount: A:0.46, C:0.02, G:0.20, T:0.32
Consensus pattern (31 bp):
TACATGGTATGAATATGAAAATATGAATGAT
Found at i:48054592 original size:23 final size:23
Alignment explanation
Indices: 48054562--48054611 Score: 82
Period size: 23 Copynumber: 2.2 Consensus size: 23
48054552 TACATACGTA
*
48054562 ATCAGGAAGCTCACAAAGAGCCT
1 ATCAGGAAGCTCACAAAAAGCCT
*
48054585 ATCAGGAAGCTCACAAAAAGCTT
1 ATCAGGAAGCTCACAAAAAGCCT
48054608 ATCA
1 ATCA
48054612 TCCATTAATT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.42, C:0.24, G:0.18, T:0.16
Consensus pattern (23 bp):
ATCAGGAAGCTCACAAAAAGCCT
Found at i:48054764 original size:26 final size:26
Alignment explanation
Indices: 48054730--48054794 Score: 71
Period size: 26 Copynumber: 2.5 Consensus size: 26
48054720 ATGAGAGCAA
* * *
48054730 TAATTAGGAAGTTCAC-AATGAACTTT
1 TAATCAGGAAGCTCACGAA-GAACCTT
*
48054756 TAATCAGGAAGCTCACGAAGAGCCTT
1 TAATCAGGAAGCTCACGAAGAACCTT
48054782 TAATCAGG-AGCTC
1 TAATCAGGAAGCTC
48054795 CGGATAGCCA
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
25 5 0.15
26 27 0.79
27 2 0.06
ACGTcount: A:0.35, C:0.18, G:0.20, T:0.26
Consensus pattern (26 bp):
TAATCAGGAAGCTCACGAAGAACCTT
Found at i:48057248 original size:64 final size:65
Alignment explanation
Indices: 48057123--48057287 Score: 216
Period size: 64 Copynumber: 2.6 Consensus size: 65
48057113 GCAAACAAAC
* *
48057123 ATTCGAACCACATATG--TAT-AATTTACA-ACATTAAATTTCAGCTCAAAGAATTTGTAACCTA
1 ATTCGAACCACATATGTATATAAAATT-CATACATTAAATTCCAGCTCAAAGAATTTGTAACCTA
48057184 T
65 T
* *
48057185 ATTCGAACCTCATATGTATGTAAAATTCATACATTAAATTCCA-CTCAAA-AATTTTGTAACCTA
1 ATTCGAACCACATATGTATATAAAATTCATACATTAAATTCCAGCTCAAAGAA-TTTGTAACCTA
48057248 T
65 T
* *
48057249 ATTTGAACCACATATGTATATATAATTCATACATTAAAT
1 ATTCGAACCACATATGTATATAAAATTCATACATTAAAT
48057288 ACNNNNNNNN
Statistics
Matches: 90, Mismatches: 8, Indels: 8
0.85 0.08 0.08
Matches are distributed among these distances:
62 15 0.17
63 2 0.02
64 57 0.63
65 16 0.18
ACGTcount: A:0.41, C:0.17, G:0.07, T:0.36
Consensus pattern (65 bp):
ATTCGAACCACATATGTATATAAAATTCATACATTAAATTCCAGCTCAAAGAATTTGTAACCTAT
Found at i:48065142 original size:64 final size:65
Alignment explanation
Indices: 48064963--48065143 Score: 232
Period size: 64 Copynumber: 2.9 Consensus size: 65
48064953 GCAAACAAAC
*
48064963 ATTTGAACCACATATGTATA-AT--TTACA-ACATTAAATTTCAGCTCAAAGAA-TTTGTAACCT
1 ATTTGAACCACATATGTATATATAATT-CATACATTAAATTACAGCTC-AAGAACTTTGTAACCT
48065023 AT
64 AT
* * * * * *
48065025 ATTCGAACCTCATATGTATGTAAAATTCATACATTAAATTCCA-CTCAAAAACTTTGTAACCTAT
1 ATTTGAACCACATATGTATATATAATTCATACATTAAATTACAGCTCAAGAACTTTGTAACCTAT
48065089 ATTTGAACCACATATGTATATATAATTCATACATTAAA-TACAGCTCAAGAACTTT
1 ATTTGAACCACATATGTATATATAATTCATACATTAAATTACAGCTCAAGAACTTT
48065144 AAATATATAT
Statistics
Matches: 101, Mismatches: 12, Indels: 10
0.82 0.10 0.08
Matches are distributed among these distances:
62 17 0.17
63 8 0.08
64 62 0.61
65 14 0.14
ACGTcount: A:0.40, C:0.18, G:0.07, T:0.35
Consensus pattern (65 bp):
ATTTGAACCACATATGTATATATAATTCATACATTAAATTACAGCTCAAGAACTTTGTAACCTAT
Found at i:48065258 original size:21 final size:22
Alignment explanation
Indices: 48065217--48065259 Score: 63
Period size: 21 Copynumber: 2.0 Consensus size: 22
48065207 TCAAAGAACT
48065217 TATATCATACATTCAAACTTTA
1 TATATCATACATTCAAACTTTA
48065239 TATAT-ATA-ATTCACAACTTTA
1 TATATCATACATTCA-AACTTTA
48065260 AATTCAACTT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
20 5 0.25
21 10 0.50
22 5 0.25
ACGTcount: A:0.42, C:0.16, G:0.00, T:0.42
Consensus pattern (22 bp):
TATATCATACATTCAAACTTTA
Found at i:48070717 original size:42 final size:44
Alignment explanation
Indices: 48070652--48070736 Score: 122
Period size: 43 Copynumber: 2.0 Consensus size: 44
48070642 GCAGGCCACC
48070652 TAAAATATACTATCTAAAGAAGTAA-TTTATT-ATTTAATTTAAT
1 TAAAATATACTATCTAAAGAAGTAATTTTATTAATTT-ATTTAAT
* *
48070695 TAAAATATAGT-TCTAAATAAGTAATTTTATTAATTTATTTAA
1 TAAAATATACTATCTAAAGAAGTAATTTTATTAATTTATTTAA
48070737 ACATAAATTA
Statistics
Matches: 38, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
42 12 0.32
43 22 0.58
44 4 0.11
ACGTcount: A:0.46, C:0.04, G:0.05, T:0.46
Consensus pattern (44 bp):
TAAAATATACTATCTAAAGAAGTAATTTTATTAATTTATTTAAT
Found at i:48071358 original size:8 final size:8
Alignment explanation
Indices: 48071347--48071390 Score: 52
Period size: 8 Copynumber: 5.1 Consensus size: 8
48071337 TATATTTAAA
48071347 TATATTTT
1 TATATTTT
*
48071355 TATATATT
1 TATATTTT
48071363 TATATTTTT
1 TATA-TTTT
48071372 TATAAATTTT
1 TAT--ATTTT
48071382 TATATTTT
1 TATATTTT
48071390 T
1 T
48071391 TTTTCAAAAT
Statistics
Matches: 31, Mismatches: 2, Indels: 6
0.79 0.05 0.15
Matches are distributed among these distances:
8 17 0.55
9 6 0.19
10 7 0.23
11 1 0.03
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (8 bp):
TATATTTT
Found at i:48071392 original size:10 final size:9
Alignment explanation
Indices: 48071332--48071391 Score: 50
Period size: 10 Copynumber: 6.4 Consensus size: 9
48071322 GTTTTAGTGA
48071332 TTTTATATAT
1 TTTTATAT-T
**
48071342 TTAAATATAT
1 TTTTATAT-T
48071352 TTTTATA-T
1 TTTTATATT
*
48071360 ATTTATATT
1 TTTTATATT
*
48071369 TTTTATAAAT
1 TTTTAT-ATT
48071379 TTTTATATT
1 TTTTATATT
48071388 TTTT
1 TTTT
48071392 TTTCAAAATA
Statistics
Matches: 40, Mismatches: 8, Indels: 5
0.75 0.15 0.09
Matches are distributed among these distances:
8 7 0.17
9 12 0.30
10 21 0.52
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (9 bp):
TTTTATATT
Found at i:48071463 original size:25 final size:26
Alignment explanation
Indices: 48071409--48071466 Score: 66
Period size: 25 Copynumber: 2.3 Consensus size: 26
48071399 ATACTATAAG
*
48071409 ATTTTTATATATTTGTAATTGTATGC
1 ATTTTTATATATTTGTAATTGTATAC
* *
48071435 ATTTTTATA-ATTT-TATATTTTATAT
1 ATTTTTATATATTTGTA-ATTGTATAC
48071460 ATTTTTA
1 ATTTTTA
48071467 AAAAAATTAA
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
24 2 0.07
25 17 0.61
26 9 0.32
ACGTcount: A:0.29, C:0.02, G:0.05, T:0.64
Consensus pattern (26 bp):
ATTTTTATATATTTGTAATTGTATAC
Found at i:48072388 original size:31 final size:31
Alignment explanation
Indices: 48072329--48072418 Score: 114
Period size: 31 Copynumber: 2.9 Consensus size: 31
48072319 TATGTGATAG
* * *
48072329 TACAGGGTTTGAATATG-AAATATTAATGA-
1 TACATGGTATGAATATGAAAATATGAATGAT
48072358 TA-ATAGGATATGAATATGAAAATATGAATGAT
1 TACAT-GG-TATGAATATGAAAATATGAATGAT
48072390 TACATGGTATGAATATGAAAATATGAATG
1 TACATGGTATGAATATGAAAATATGAATG
48072419 GTTGATACCA
Statistics
Matches: 53, Mismatches: 3, Indels: 8
0.83 0.05 0.12
Matches are distributed among these distances:
28 1 0.02
29 4 0.08
30 9 0.17
31 33 0.62
32 4 0.08
33 2 0.04
ACGTcount: A:0.46, C:0.02, G:0.20, T:0.32
Consensus pattern (31 bp):
TACATGGTATGAATATGAAAATATGAATGAT
Done.