Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr09 ID=Chr09-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 70713020
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 1142373 characters in sequence are not A, C, G, or T
File 157 of 226
Found at i:50787570 original size:162 final size:162
Alignment explanation
Indices: 50787299--50787798 Score: 660
Period size: 162 Copynumber: 3.1 Consensus size: 162
50787289 GGAGTAGACA
** * *
50787299 TATGTATGGCACTTGTAGGTCTTGGATTACATCTTCCAATTGCGAGCAACTCTTTATTTTCTAAG
1 TATGTATGGCACTTGTAGGTCTTGGATTATGTCTTCCAATTGCGAGCAACTCTTTATCTTCAAAG
* *** * * * *
50787364 TATGCAATTGCCCAAGGGTATTAGTAGCAGATAGTGGGAAGAGATATTTTAAATTATCACATTTT
66 TATGCAATTGTCCAAGACAATTAGCAACAGATAGTGGAAAGAGATACTTTAAATTATCACATTTT
* *
50787429 TCAACCTTTACTTCCCTTAAACTCTGGAGGCT
131 TCAACATTTACTTCCCTTAAACTTTGGAGGCT
** * *
50787461 TATGTATGGCACTTGCGGGTCTTGGATTATGTTTTCCAATTGAGAGCAACTCTTTATCTTCAAAG
1 TATGTATGGCACTTGTAGGTCTTGGATTATGTCTTCCAATTGCGAGCAACTCTTTATCTTCAAAG
* *
50787526 TATGCAATTGTCCAAGACAACTAGCAACAGATAGTGGAAAGAGATACTTTAAATTATCGCATTTT
66 TATGCAATTGTCCAAGACAATTAGCAACAGATAGTGGAAAGAGATACTTTAAATTATCACATTTT
*
50787591 TCAACATTTACTTCCCATAAACTTTGGAGGCT
131 TCAACATTTACTTCCCTTAAACTTTGGAGGCT
* ** * *
50787623 TACGTATGGCACTTGTAGACCTAGGATTATGTCTTCCAATTGCGAGCAACTCTTTATCTCCAAAG
1 TATGTATGGCACTTGTAGGTCTTGGATTATGTCTTCCAATTGCGAGCAACTCTTTATCTTCAAAG
* * * * **
50787688 TATGCAATTGTCTAAGACCATTATCAACAGACAGACGAAAGAGATACTTTAAATTATCACATTTT
66 TATGCAATTGTCCAAGACAATTAGCAACAGATAGTGGAAAGAGATACTTTAAATTATCACATTTT
* * *
50787753 TCAACTTTTACTTCCTTTAAACTTTGGAGTCT
131 TCAACATTTACTTCCCTTAAACTTTGGAGGCT
*
50787785 CATGT-TCGGCACTT
1 TATGTAT-GGCACTT
50787799 AAACATGAAA
Statistics
Matches: 293, Mismatches: 44, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
161 1 0.00
162 292 1.00
ACGTcount: A:0.29, C:0.19, G:0.17, T:0.35
Consensus pattern (162 bp):
TATGTATGGCACTTGTAGGTCTTGGATTATGTCTTCCAATTGCGAGCAACTCTTTATCTTCAAAG
TATGCAATTGTCCAAGACAATTAGCAACAGATAGTGGAAAGAGATACTTTAAATTATCACATTTT
TCAACATTTACTTCCCTTAAACTTTGGAGGCT
Found at i:50789615 original size:42 final size:43
Alignment explanation
Indices: 50789514--50789663 Score: 153
Period size: 42 Copynumber: 3.5 Consensus size: 43
50789504 ATGTGATTTT
* * *
50789514 GTGTAAGACCACGTCTGGGAC-GTTGGCATCGAT-TTGAGATTTAC
1 GTGTAAGACCATGTCTGGGACAG-TGACATCGATATT-TGA-TTAC
*
50789558 GTGTAAGACCATGTCTGGGACATTGACATC-ATATTTGATTAC
1 GTGTAAGACCATGTCTGGGACAGTGACATCGATATTTGATTAC
* * * *
50789600 GTATAAGACCTTGTCTGGGATAGTGACATCGTTATTTGATTAC
1 GTGTAAGACCATGTCTGGGACAGTGACATCGATATTTGATTAC
* **
50789643 ATGTAAGACCACATCTGGGAC
1 GTGTAAGACCATGTCTGGGAC
50789664 GTTGGCATTG
Statistics
Matches: 88, Mismatches: 15, Indels: 7
0.80 0.14 0.06
Matches are distributed among these distances:
42 30 0.34
43 30 0.34
44 28 0.32
ACGTcount: A:0.27, C:0.17, G:0.25, T:0.31
Consensus pattern (43 bp):
GTGTAAGACCATGTCTGGGACAGTGACATCGATATTTGATTAC
Found at i:50789867 original size:2 final size:2
Alignment explanation
Indices: 50789860--50789886 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
50789850 TAAATGCAAT
50789860 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
50789887 GTGTTTAAGA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:50790588 original size:15 final size:15
Alignment explanation
Indices: 50790570--50790620 Score: 57
Period size: 15 Copynumber: 3.3 Consensus size: 15
50790560 AAAACTAAGG
50790570 TTTTTAAAATATTTA
1 TTTTTAAAATATTTA
* *
50790585 TTTTTATAATATTAATT
1 TTTTTAAAATATT--TA
*
50790602 TTTTTAAAATTTTTA
1 TTTTTAAAATATTTA
50790617 TTTT
1 TTTT
50790621 AAATTATCAT
Statistics
Matches: 29, Mismatches: 5, Indels: 4
0.76 0.13 0.11
Matches are distributed among these distances:
15 17 0.59
17 12 0.41
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (15 bp):
TTTTTAAAATATTTA
Found at i:50790619 original size:17 final size:17
Alignment explanation
Indices: 50790570--50790620 Score: 61
Period size: 17 Copynumber: 3.1 Consensus size: 17
50790560 AAAACTAAGG
50790570 TTTTTAAAATATTTA--
1 TTTTTAAAATATTTATT
* *
50790585 TTTTTATAATATTAATT
1 TTTTTAAAATATTTATT
*
50790602 TTTTTAAAATTTTTATT
1 TTTTTAAAATATTTATT
50790619 TT
1 TT
50790621 AAATTATCAT
Statistics
Matches: 29, Mismatches: 5, Indels: 2
0.81 0.14 0.06
Matches are distributed among these distances:
15 13 0.45
17 16 0.55
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (17 bp):
TTTTTAAAATATTTATT
Found at i:50790819 original size:21 final size:21
Alignment explanation
Indices: 50790794--50790834 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
50790784 TTTCATAAAT
*
50790794 TTGACTGGTATAATAACAAAA
1 TTGACTGCTATAATAACAAAA
50790815 TTGACTGCTATAATAACAAA
1 TTGACTGCTATAATAACAAA
50790835 TTTAGCTCTC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.46, C:0.12, G:0.12, T:0.29
Consensus pattern (21 bp):
TTGACTGCTATAATAACAAAA
Found at i:50792649 original size:3 final size:3
Alignment explanation
Indices: 50792633--50792711 Score: 140
Period size: 3 Copynumber: 25.7 Consensus size: 3
50792623 CAATTTGTAG
50792633 TAA TAA TAGCA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TA--A TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
50792680 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
50792712 TGAACAATAA
Statistics
Matches: 74, Mismatches: 0, Indels: 4
0.95 0.00 0.05
Matches are distributed among these distances:
3 71 0.96
5 3 0.04
ACGTcount: A:0.65, C:0.01, G:0.01, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:50792815 original size:9 final size:8
Alignment explanation
Indices: 50792796--50792825 Score: 51
Period size: 8 Copynumber: 3.8 Consensus size: 8
50792786 GCAAAAGAAG
*
50792796 AAAAGATA
1 AAAAAATA
50792804 AAAAAATA
1 AAAAAATA
50792812 AAAAAATA
1 AAAAAATA
50792820 AAAAAA
1 AAAAAA
50792826 CAAATTTTAA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.87, C:0.00, G:0.03, T:0.10
Consensus pattern (8 bp):
AAAAAATA
Found at i:50792885 original size:17 final size:16
Alignment explanation
Indices: 50792843--50792887 Score: 54
Period size: 17 Copynumber: 2.7 Consensus size: 16
50792833 TAAATAAAAG
50792843 GAAATAATAAGTAAATA
1 GAAATAATAA-TAAATA
* *
50792860 AAAATAATAATACATA
1 GAAATAATAATAAATA
50792876 GAAATGAATAAT
1 GAAAT-AATAAT
50792888 CTAGAAAGGG
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
16 9 0.38
17 15 0.62
ACGTcount: A:0.64, C:0.02, G:0.09, T:0.24
Consensus pattern (16 bp):
GAAATAATAATAAATA
Found at i:50794401 original size:133 final size:132
Alignment explanation
Indices: 50794221--50794811 Score: 523
Period size: 133 Copynumber: 4.4 Consensus size: 132
50794211 CAACCTCAGG
* *
50794221 GAGATGAGATTTATAGCTTTAATTTGCTTCACTGCAACTTCAGGGAGATAAGATTTACTATTTTC
1 GAGATAAGATTTATAGCTTTAATCTGC-TCACTGCAACTTCAGGGAGATAAGATTTACTATTTT-
* * * * * * * * *
50794286 AATCCGTTCCACTGCCACTTTAGGGAAATAAGA-TTTGT-TGTTCTAATCTGCTCTACTACAACT
64 AATCTGCTCCACTGCAACTTCAGAGAGATAAGATTTTCTATCTTC-AATCTGCTCCACTACAACT
50794349 TTAGA
128 TTAGA
* * * *
50794354 GAGATAAAATTTATAGCTTTAATCTGCTACATTGAAACTTCAGGGAGATAAGATTTA-TGGTTTT
1 GAGATAAGATTTATAGCTTTAATCTGCT-CACTGCAACTTCAGGGAGATAAGATTTACT-ATTTT
* * * *
50794418 AATCTGCTCTACTACAACTTCAGAGAGATAAGATTTTCTATCTTCAATGTGCTCCACTGCAACTT
64 AATCTGCTCCACTGCAACTTCAGAGAGATAAGATTTTCTATCTTCAATCTGCTCCACTACAACTT
*
50794483 TAGG
129 TAGA
* * * * *
50794487 GAGAT-AGATTTGTGGCTTTAATCTGCTCTACTGCAACTTTAGAGAGATAAGATTTGCTATCTTT
1 GAGATAAGATTTATAGCTTTAATCTGCTC-ACTGCAACTTCAGGGAGATAAGATTTACTAT-TTT
* * * * * *
50794551 AATCTACTCCACTGCAACTTCAGAGAGATAAGATTTTCTATCTTCGATTTGCTCTACTGCGACTT
64 AATCTGCTCCACTGCAACTTCAGAGAGATAAGATTTTCTATCTTCAATCTGCTCCACTACAACTT
*
50794616 AAG-
129 TAGA
* * * * ** *
50794619 GCAGATAATATTTGCTATCTTCAATCTGCTCCACTGTGACTTCAGGGAGATAAGGATTGT--TGT
1 G-AGATAAGATTT-ATAGCTTTAATCTGCT-CACTGCAACTTCAGGGAGATAA-GATT-TACTAT
* * * * * ** * * *
50794682 CTTCAATATGCTCCACTGCGACTTCAGGGAGATAAGA-TTTATGGCTTTAATCTGCTCCACCATA
61 -TTTAATCTGCTCCACTGCAACTTCAGAGAGATAAGATTTTCTATCTTCAATCTGCTCCACTACA
50794746 ACTTTAGA
125 ACTTTAGA
* * * *
50794754 GAGATAGGATTTGTGGCTTTAATCTGCTCTACCGCAACTTCAGGGAGATAAGATTTAC
1 GAGATAAGATTTATAGCTTTAATCTGCTC-ACTGCAACTTCAGGGAGATAAGATTTAC
50794812 CATGATAAAT
Statistics
Matches: 368, Mismatches: 73, Indels: 34
0.77 0.15 0.07
Matches are distributed among these distances:
131 2 0.01
132 75 0.20
133 181 0.49
134 40 0.11
135 64 0.17
136 5 0.01
137 1 0.00
ACGTcount: A:0.28, C:0.18, G:0.18, T:0.35
Consensus pattern (132 bp):
GAGATAAGATTTATAGCTTTAATCTGCTCACTGCAACTTCAGGGAGATAAGATTTACTATTTTAA
TCTGCTCCACTGCAACTTCAGAGAGATAAGATTTTCTATCTTCAATCTGCTCCACTACAACTTTA
GA
Found at i:50794491 original size:45 final size:45
Alignment explanation
Indices: 50794194--50794809 Score: 419
Period size: 45 Copynumber: 13.9 Consensus size: 45
50794184 GAATTGTAAT
* ** * * * *
50794194 TTCAATCTACTCTGCTGCAACCTCAGGGAGATGAGA-TTTATAGC
1 TTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTTCTATC
* * * * *
50794238 TTTAATTTGCTTCACTGCAACTTCAGGGAGATAAGATTTACTATT
1 TTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTTCTATC
* * * * * * *
50794283 TTCAATCCGTTCCACTGCCACTTTAGGGAAATAAGA-TTTGT-TG
1 TTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTTCTATC
* * * * * * *
50794326 TTCTAATCTGCTCTACTACAACTTTAGAGAGATAA-AATTTATAGC
1 TTC-AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTTCTATC
* * * * *
50794371 TTTAATCTGCTACATTGAAACTTCAGGGAGATAAGATTTATGGT-T-
1 TTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTT-T-CTATC
* * *
50794416 TT-AATCTGCTCTACTACAACTTCAGAGAGATAAGATTTTCTATC
1 TTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTTCTATC
* * * **
50794460 TTCAATGTGCTCCACTGCAACTTTAGGGAGAT-AGA-TTTGTGGC
1 TTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTTCTATC
* * * * *
50794503 TTTAATCTGCTCTACTGCAACTTTAGAGAGATAAGATTTGCTATC
1 TTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTTCTATC
* * *
50794548 TTTAATCTACTCCACTGCAACTTCAGAGAGATAAGATTTTCTATC
1 TTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTTCTATC
* * * * * * * *
50794593 TTCGATTTGCTCTACTGCGACTTAAGGCAGATAATATTTGCTATC
1 TTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTTCTATC
** * *
50794638 TTCAATCTGCTCCACTGTGACTTCAGGGAGATAAGGATTGT-TGTC
1 TTCAATCTGCTCCACTGCAACTTCAGGGAGATAA-GATTTTCTATC
* * * **
50794683 TTCAATATGCTCCACTGCGACTTCAGGGAGATAAGA-TTTATGGC
1 TTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTTCTATC
* *** * * * * **
50794727 TTTAATCTGCTCCACCATAACTTTAGAGAGATAGGA-TTTGTGGC
1 TTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTTCTATC
* * *
50794771 TTTAATCTGCTCTACCGCAACTTCAGGGAGATAAGATTT
1 TTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTT
50794810 ACCATGATAA
Statistics
Matches: 445, Mismatches: 112, Indels: 29
0.76 0.19 0.05
Matches are distributed among these distances:
42 1 0.00
43 42 0.09
44 190 0.43
45 207 0.47
46 4 0.01
47 1 0.00
ACGTcount: A:0.28, C:0.19, G:0.18, T:0.35
Consensus pattern (45 bp):
TTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTTCTATC
Found at i:50794758 original size:44 final size:44
Alignment explanation
Indices: 50794208--50794810 Score: 469
Period size: 44 Copynumber: 13.6 Consensus size: 44
50794198 ATCTACTCTG
* * * *
50794208 CTGCAACCTCAGGGAGATGAGATTTATAGCTTTAATTTGCTTCA
1 CTGCAACTTCAGGGAGATAAGATTTATAGCTTTAATCTGCTCCA
* * *
50794252 CTGCAACTTCAGGGAGATAAGATTTACTA-TTTTCAATCCGTTCCA
1 CTGCAACTTCAGGGAGATAAGATTTA-TAGCTTT-AATCTGCTCCA
* * * * * *
50794297 CTGCCACTTTAGGGAAATAAGATTTGTTG-TTCTAATCTGCTCTA
1 CTGCAACTTCAGGGAGATAAGATTTATAGCTT-TAATCTGCTCCA
* * * * *
50794341 CTACAACTTTAGAGAGATAAAATTTATAGCTTTAATCTGCTACA
1 CTGCAACTTCAGGGAGATAAGATTTATAGCTTTAATCTGCTCCA
* * * * *
50794385 TTGAAACTTCAGGGAGATAAGATTTATGGTTTTAATCTGCTCTA
1 CTGCAACTTCAGGGAGATAAGATTTATAGCTTTAATCTGCTCCA
* * * * * *
50794429 CTACAACTTCAGAGAGATAAGATTTTCTATCTTCAATGTGCTCCA
1 CTGCAACTTCAGGGAGATAAGA-TTTATAGCTTTAATCTGCTCCA
* * * *
50794474 CTGCAACTTTAGGGAGAT-AGATTTGTGGCTTTAATCTGCTCTA
1 CTGCAACTTCAGGGAGATAAGATTTATAGCTTTAATCTGCTCCA
* * * * *
50794517 CTGCAACTTTAGAGAGATAAGATTTGCTATCTTTAATCTACTCCA
1 CTGCAACTTCAGGGAGATAAGATTT-ATAGCTTTAATCTGCTCCA
* * * ** * *
50794562 CTGCAACTTCAGAGAGATAAGATTTTCTATCTTCGATTTGCTCTA
1 CTGCAACTTCAGGGAGATAAGA-TTTATAGCTTTAATCTGCTCCA
* * * * * * *
50794607 CTGCGACTTAAGGCAGATAATATTTGCTATCTTCAATCTGCTCCA
1 CTGCAACTTCAGGGAGATAAGATTT-ATAGCTTTAATCTGCTCCA
** * *
50794652 CTGTGACTTCAGGGAGATAAGGATTGT-T-GTCTTCAATATGCTCCA
1 CTGCAACTTCAGGGAGATAA-GATT-TATAG-CTTTAATCTGCTCCA
* *
50794697 CTGCGACTTCAGGGAGATAAGATTTATGGCTTTAATCTGCTCCA
1 CTGCAACTTCAGGGAGATAAGATTTATAGCTTTAATCTGCTCCA
*** * * * * * *
50794741 CCATAACTTTAGAGAGATAGGATTTGTGGCTTTAATCTGCTCTA
1 CTGCAACTTCAGGGAGATAAGATTTATAGCTTTAATCTGCTCCA
*
50794785 CCGCAACTTCAGGGAGATAAGATTTA
1 CTGCAACTTCAGGGAGATAAGATTTA
50794811 CCATGATAAA
Statistics
Matches: 446, Mismatches: 98, Indels: 30
0.78 0.17 0.05
Matches are distributed among these distances:
43 34 0.08
44 207 0.46
45 198 0.44
46 6 0.01
47 1 0.00
ACGTcount: A:0.28, C:0.19, G:0.18, T:0.35
Consensus pattern (44 bp):
CTGCAACTTCAGGGAGATAAGATTTATAGCTTTAATCTGCTCCA
Found at i:50798543 original size:27 final size:27
Alignment explanation
Indices: 50798506--50798584 Score: 140
Period size: 27 Copynumber: 2.9 Consensus size: 27
50798496 TTATGTTTTA
*
50798506 ATATATTTTATGACATGTGGTTGAATG
1 ATATATTTTATGATATGTGGTTGAATG
*
50798533 ATATATTTTATGATATGTGATTGAATG
1 ATATATTTTATGATATGTGGTTGAATG
50798560 ATATATTTTATGATATGTGGTTGAA
1 ATATATTTTATGATATGTGGTTGAA
50798585 CATCAAATAA
Statistics
Matches: 49, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
27 49 1.00
ACGTcount: A:0.32, C:0.01, G:0.20, T:0.47
Consensus pattern (27 bp):
ATATATTTTATGATATGTGGTTGAATG
Found at i:50798891 original size:111 final size:110
Alignment explanation
Indices: 50798681--50798894 Score: 320
Period size: 111 Copynumber: 1.9 Consensus size: 110
50798671 TTAAGGATCC
* ** * * * *
50798681 ATGTGAAATTGTGATTAAGTGAATCCGGGTGCTGGTCTTAAGTTCTACTAGTGGTTGGGTATATT
1 ATGTGAAATTGTGATAAAGTGAATCCAAGTGCTGGTCTTAAGTTCTACCAGTGGCTGCGTATATC
* *
50798746 GGCATGTGTTGCGGATACCTGACAGCTTGTGTGAGCAGACCTATG
66 GGCATGTGTTACAGATACCTGACAGCTTGTGTGAGCAGACCTATG
*
50798791 ATGTGAAATTGTGACTAAAGTGAATTCAAGTGCTGGTCTTAAGTTCTACCAGTGGCTGCGTATAT
1 ATGTGAAATTGTGA-TAAAGTGAATCCAAGTGCTGGTCTTAAGTTCTACCAGTGGCTGCGTATAT
*
50798856 CGGCATGTGTTACAGATACTTGACAGCTTGTGTGAGCAG
65 CGGCATGTGTTACAGATACCTGACAGCTTGTGTGAGCAG
50798895 CATTGAGTAG
Statistics
Matches: 92, Mismatches: 11, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
110 14 0.15
111 78 0.85
ACGTcount: A:0.24, C:0.14, G:0.29, T:0.33
Consensus pattern (110 bp):
ATGTGAAATTGTGATAAAGTGAATCCAAGTGCTGGTCTTAAGTTCTACCAGTGGCTGCGTATATC
GGCATGTGTTACAGATACCTGACAGCTTGTGTGAGCAGACCTATG
Found at i:50799404 original size:15 final size:15
Alignment explanation
Indices: 50799384--50799413 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
50799374 TTTAGAATCC
50799384 CCTATTCTGAATTTG
1 CCTATTCTGAATTTG
50799399 CCTATTCTGAATTTG
1 CCTATTCTGAATTTG
50799414 GAAACTCGTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.20, C:0.20, G:0.13, T:0.47
Consensus pattern (15 bp):
CCTATTCTGAATTTG
Found at i:50801297 original size:16 final size:16
Alignment explanation
Indices: 50801220--50801299 Score: 53
Period size: 16 Copynumber: 5.3 Consensus size: 16
50801210 TAGACTTTGT
**
50801220 TATATACATACTCATA
1 TATATACATACTTTTA
*
50801236 T-TTTACATAC-TTTA
1 TATATACATACTTTTA
* *
50801250 TA-ATTCAT-C-TATA
1 TATATACATACTTTTA
*
50801263 TATATACATACTTTCA
1 TATATACATACTTTTA
**
50801279 TATATACATGTTTTTA
1 TATATACATACTTTTA
50801295 TATAT
1 TATAT
50801300 TTCTATTATT
Statistics
Matches: 48, Mismatches: 12, Indels: 8
0.71 0.18 0.12
Matches are distributed among these distances:
13 6 0.12
14 12 0.25
15 9 0.19
16 21 0.44
ACGTcount: A:0.36, C:0.14, G:0.01, T:0.49
Consensus pattern (16 bp):
TATATACATACTTTTA
Found at i:50805491 original size:8 final size:8
Alignment explanation
Indices: 50805478--50805530 Score: 63
Period size: 8 Copynumber: 6.4 Consensus size: 8
50805468 TCAGACTCAA
50805478 AAAAAATC
1 AAAAAATC
50805486 AAAAAATC
1 AAAAAATC
50805494 AAAAAATC
1 AAAAAATC
*
50805502 AAAAAA-A
1 AAAAAATC
50805509 AATCAAAATC
1 AA--AAAATC
50805519 AAAAAAATC
1 -AAAAAATC
50805528 AAA
1 AAA
50805531 GTCAAAAATA
Statistics
Matches: 39, Mismatches: 2, Indels: 8
0.80 0.04 0.16
Matches are distributed among these distances:
7 2 0.05
8 25 0.64
9 10 0.26
11 2 0.05
ACGTcount: A:0.77, C:0.11, G:0.00, T:0.11
Consensus pattern (8 bp):
AAAAAATC
Found at i:50805516 original size:26 final size:27
Alignment explanation
Indices: 50805476--50805530 Score: 87
Period size: 26 Copynumber: 2.1 Consensus size: 27
50805466 GTTCAGACTC
50805476 AAAAAAAATCAAAAAATC-AAAAAATCA
1 AAAAAAAATC-AAAAATCAAAAAAATCA
50805503 AAAAAAAATC-AAAATCAAAAAAATCA
1 AAAAAAAATCAAAAATCAAAAAAATCA
50805529 AA
1 AA
50805531 GTCAAAAATA
Statistics
Matches: 27, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
25 6 0.22
26 11 0.41
27 10 0.37
ACGTcount: A:0.78, C:0.11, G:0.00, T:0.11
Consensus pattern (27 bp):
AAAAAAAATCAAAAATCAAAAAAATCA
Found at i:50805535 original size:15 final size:15
Alignment explanation
Indices: 50805480--50805538 Score: 66
Period size: 15 Copynumber: 3.7 Consensus size: 15
50805470 AGACTCAAAA
50805480 AAAATC-AAAAAATC
1 AAAATCAAAAAAATC
50805494 AAAAAATCAAAAAAAAATC
1 --AAAATC--AAAAAAATC
50805513 AAAATCAAAAAAATC
1 AAAATCAAAAAAATC
*
50805528 AAAGTCAAAAA
1 AAAATCAAAAA
50805539 TAGGAGAAAA
Statistics
Matches: 39, Mismatches: 1, Indels: 7
0.83 0.02 0.15
Matches are distributed among these distances:
15 19 0.49
16 6 0.15
17 6 0.15
19 8 0.21
ACGTcount: A:0.75, C:0.12, G:0.02, T:0.12
Consensus pattern (15 bp):
AAAATCAAAAAAATC
Found at i:50808165 original size:88 final size:88
Alignment explanation
Indices: 50808016--50808606 Score: 1004
Period size: 88 Copynumber: 6.7 Consensus size: 88
50808006 ATGAAGTTAC
50808016 AGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCTCTCTCGGTTG
1 AGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCTCTCTCGGTTG
50808081 TGATGGAGCTGGTTGAAGACAAA
66 TGATGGAGCTGGTTGAAGACAAA
* *
50808104 AGATCTTGCCTTCCTGTATTGATAGCGAAGCAGGTCGAAGACACAAACCTTGCCTCTCTCGGTTG
1 AGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCTCTCTCGGTTG
*
50808169 T-ATAGAGCTGGTTGAAGACAAA
66 TGATGGAGCTGGTTGAAGACAAA
* * * *
50808191 AGATCTTGCCTTCCTGTATTAACAACGAAGCAGGTCGAAGACACAAACCTTACCTCTCTCGGTTG
1 AGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCTCTCTCGGTTG
50808256 TGATGGAGCTGGTTGAAGACAAA
66 TGATGGAGCTGGTTGAAGACAAA
* * * * *
50808279 AGATTTTGCCTTCCTGTATTGACAACGAAGCATGTCGAAGACACAAACCTTGCTTCTCTCGGTTG
1 AGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCTCTCTCGGTTG
50808344 TGATGGAGCTGGTTGAAGACAAA
66 TGATGGAGCTGGTTGAAGACAAA
*
50808367 AGATCTTGCCTTCCTGGATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCTCTCTCGGTTG
1 AGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCTCTCTCGGTTG
*
50808432 TGATAGAGCTGGTTGAAGACAAA
66 TGATGGAGCTGGTTGAAGACAAA
50808455 AGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCTCTCTCGGTTG
1 AGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCTCTCTCGGTTG
50808520 TGATGGAGCTGGTTGAAGACAAA
66 TGATGGAGCTGGTTGAAGACAAA
* * * * *
50808543 AGATCTTGCCTTCCTACATTGACAGCGAAGCAGATCGAAAACACAAGCCTTACCTCTCTCGGTT
1 AGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCTCTCTCGGTT
50808607 TAAGTGGAAA
Statistics
Matches: 476, Mismatches: 26, Indels: 2
0.94 0.05 0.00
Matches are distributed among these distances:
87 82 0.17
88 394 0.83
ACGTcount: A:0.27, C:0.23, G:0.24, T:0.25
Consensus pattern (88 bp):
AGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCTCTCTCGGTTG
TGATGGAGCTGGTTGAAGACAAA
Found at i:50808893 original size:50 final size:50
Alignment explanation
Indices: 50808818--50809580 Score: 358
Period size: 50 Copynumber: 15.3 Consensus size: 50
50808808 ACAACATGAT
*
50808818 AGATTGAAGCTATAACAGCGGATCTTACTTT-CTCAGCGTTGCAGTGGAAC
1 AGATTGAAGCTACAACAGCGGATCTTACTTTCCT-AGCGTTGCAGTGGAAC
** * * * * * * * *
50808868 AGATTGAAGCTTTAACAGCGGATCTTAATTCCCTAACATTACAAT-TAAA
1 AGATTGAAGCTACAACAGCGGATCTTACTTTCCTAGCGTTGCAGTGGAAC
* *
50808917 AGATTGAAGCTATAACAGCGGATCTTATTTTCCTAGCGTTGCAGTGGAAC
1 AGATTGAAGCTACAACAGCGGATCTTACTTTCCTAGCGTTGCAGTGGAAC
* * * * *
50808967 AGATTGAAGCTACAACAGCGGATCTTACTTCCCT-GACATTGCAAT-TAAGA
1 AGATTGAAGCTACAACAGCGGATCTTACTTTCCTAG-CGTTGCAGTGGAA-C
50809017 AGATTGAAGCTACAACAGCGGATCTTACTTTCCTAGCGTTGCAGTGGAAC
1 AGATTGAAGCTACAACAGCGGATCTTACTTTCCTAGCGTTGCAGTGGAAC
* * * * ** *
50809067 AGATTGAAGCTACAACAGCGGATCTTACTTCCCT-GACATTACAATTAAAA
1 AGATTGAAGCTACAACAGCGGATCTTACTTTCCTAG-CGTTGCAGTGGAAC
* * * **
50809117 AGATCGAAGCTACAACGGCGAATCTTACCTTT-C-AG-GTGGTGCAGCAGAAC
1 AGATTGAAGCTACAACAGCGGATCTTA-CTTTCCTAGCGT--TGCAGTGGAAC
* * * * * * * * ** *
50809167 AGATTAAAGCTACGACAGCGAATCTCACTTCCCCAGCATTGCAATTCAAA
1 AGATTGAAGCTACAACAGCGGATCTTACTTTCCTAGCGTTGCAGTGGAAC
** * * * *
50809217 AGAACGAAGCCACAAC-GACGAATCTTAC-TTCCCAGGCGATGCAGTGGAAC
1 AGATTGAAGCTACAACAG-CGGATCTTACTTTCCTA-GCGTTGCAGTGGAAC
* * * * * * * * * ** *
50809267 AGATTGAAACTACGACGGCGAATC-TCCCTTCCTCGACATTGCAATTAAAA
1 AGATTGAAGCTACAACAGCGGATCTTACTTTCCTAG-CGTTGCAGTGGAAC
* * * * * * * *
50809317 AGATCGAAGCCACAACGGTGAATCTTAC-TTCCCAGGCGATGCAGCGGAAC
1 AGATTGAAGCTACAACAGCGGATCTTACTTTCCTA-GCGTTGCAGTGGAAC
* ** * * * * * * * *
50809367 AGATTGAAGCTACGATGGCGAATCTCACTTCCCTAACATTGCAAT-TAAA
1 AGATTGAAGCTACAACAGCGGATCTTACTTTCCTAGCGTTGCAGTGGAAC
* * * * *
50809416 AGATTGAAGCCACAACGGCGAATCTTAC-TTCC-AGGCGATGCAGCGGAAC
1 AGATTGAAGCTACAACAGCGGATCTTACTTTCCTA-GCGTTGCAGTGGAAC
* * ** * * * * * **
50809465 AGATTAAAACTATGACGGCGAATCTTGC-TTCCTCGACATTGCAGTTTCAA-
1 AGATTGAAGCTACAACAGCGGATCTTACTTTCCTAG-CGTTGCAG-TGGAAC
* * * * *
50809515 AGATTGAAGCTACAACGGTGAATCTTACCTTT-C-AGGCGGTGCAGCGGAAC
1 AGATTGAAGCTACAACAGCGGATCTTA-CTTTCCTA-GCGTTGCAGTGGAAC
50809565 AGATTGAAGCTACAAC
1 AGATTGAAGCTACAAC
50809581 GGCGAATCCT
Statistics
Matches: 529, Mismatches: 153, Indels: 62
0.71 0.21 0.08
Matches are distributed among these distances:
47 1 0.00
48 9 0.02
49 113 0.21
50 380 0.72
51 23 0.04
52 3 0.01
ACGTcount: A:0.32, C:0.23, G:0.21, T:0.24
Consensus pattern (50 bp):
AGATTGAAGCTACAACAGCGGATCTTACTTTCCTAGCGTTGCAGTGGAAC
Found at i:50809076 original size:100 final size:99
Alignment explanation
Indices: 50808818--50809676 Score: 842
Period size: 100 Copynumber: 8.6 Consensus size: 99
50808808 ACAACATGAT
* * * * **
50808818 AGATTGAAGCTATAACAGCGGATCTTACTTTCTCA-GCGTTGCAGTGGAACAGATTGAAGCTTTA
1 AGATTGAAGCTACAACGGCGAATCTTACTTTC-CAGGCGTTGCAGCGGAACAGATTGAAGCTACA
* * * *
50808882 ACAGCGGATCTTAATTCCCTAACATTACAATTAAA
65 ACAGCGAATCTTACTTCCCTGACATTGCAATTAAA
* * * * *
50808917 AGATTGAAGCTATAACAGCGGATCTTATTTTCCTA-GCGTTGCAGTGGAACAGATTGAAGCTACA
1 AGATTGAAGCTACAACGGCGAATCTTACTTTCC-AGGCGTTGCAGCGGAACAGATTGAAGCTACA
*
50808981 ACAGCGGATCTTACTTCCCTGACATTGCAATTAAGA
65 ACAGCGAATCTTACTTCCCTGACATTGCAATTAA-A
* * *
50809017 AGATTGAAGCTACAACAGCGGATCTTACTTTCCTA-GCGTTGCAGTGGAACAGATTGAAGCTACA
1 AGATTGAAGCTACAACGGCGAATCTTACTTTCC-AGGCGTTGCAGCGGAACAGATTGAAGCTACA
* *
50809081 ACAGCGGATCTTACTTCCCTGACATTACAATTAAAA
65 ACAGCGAATCTTACTTCCCTGACATTGCAATT-AAA
* * * * * *
50809117 AGATCGAAGCTACAACGGCGAATCTTACCTTT-CAGGTGGTGCAGCAGAACAGATTAAAGCTACG
1 AGATTGAAGCTACAACGGCGAATCTTA-CTTTCCAGGCGTTGCAGCGGAACAGATTGAAGCTACA
* *
50809181 ACAGCGAATCTCACTTCCC-CAGCATTGCAATTCAAA
65 ACAGCGAATCTTACTTCCCTGA-CATTGCAATT-AAA
** * * * * * * *
50809217 AGAACGAAGCCACAACGACGAATCTTACTTCCCAGGCGATGCAGTGGAACAGATTGAAACTACGA
1 AGATTGAAGCTACAACGGCGAATCTTACTTTCCAGGCGTTGCAGCGGAACAGATTGAAGCTACAA
* **
50809282 CGGCGAATCTCCCTT-CCTCGACATTGCAATTAAAA
66 CAGCGAATCTTACTTCCCT-GACATTGCAATT-AAA
* * * * * *
50809317 AGATCGAAGCCACAACGGTGAATCTTACTTCCCAGGCGATGCAGCGGAACAGATTGAAGCTACGA
1 AGATTGAAGCTACAACGGCGAATCTTACTTTCCAGGCGTTGCAGCGGAACAGATTGAAGCTACAA
** * *
50809382 TGGCGAATCTCACTTCCCTAACATTGCAATTAAA
66 CAGCGAATCTTACTTCCCTGACATTGCAATTAAA
* * * * **
50809416 AGATTGAAGCCACAACGGCGAATCTTAC-TTCCAGGCGATGCAGCGGAACAGATTAAAACTATGA
1 AGATTGAAGCTACAACGGCGAATCTTACTTTCCAGGCGTTGCAGCGGAACAGATTGAAGCTACAA
* * * *
50809480 CGGCGAATCTTGCTT-CCTCGACATTGCAGTTTCAA
66 CAGCGAATCTTACTTCCCT-GACATTGCA-ATTAAA
* *
50809515 AGATTGAAGCTACAACGGTGAATCTTACCTTT-CAGGCGGTGCAGCGGAACAGATTGAAGCTACA
1 AGATTGAAGCTACAACGGCGAATCTTA-CTTTCCAGGCGTTGCAGCGGAACAGATTGAAGCTACA
* * * * *
50809579 ACGGCGAATCCTGCTTCCCCGACATAGCAATTTAAA
65 ACAGCGAATCTTACTTCCCTGACATTGCAA-TTAAA
* * * *
50809615 AGATT-AAGGCTACAATGACGAATCTTAC-TCCCAGGCGATGC-GACGGAACAGATTGAAGCTAC
1 AGATTGAA-GCTACAACGGCGAATCTTACTTTCCAGGCGTTGCAG-CGGAACAGATTGAAGCTAC
50809677 GACGATTGAA
Statistics
Matches: 667, Mismatches: 74, Indels: 38
0.86 0.09 0.05
Matches are distributed among these distances:
97 3 0.00
98 55 0.08
99 186 0.28
100 409 0.61
101 14 0.02
ACGTcount: A:0.32, C:0.23, G:0.21, T:0.23
Consensus pattern (99 bp):
AGATTGAAGCTACAACGGCGAATCTTACTTTCCAGGCGTTGCAGCGGAACAGATTGAAGCTACAA
CAGCGAATCTTACTTCCCTGACATTGCAATTAAA
Found at i:50812092 original size:16 final size:16
Alignment explanation
Indices: 50812015--50812094 Score: 53
Period size: 16 Copynumber: 5.3 Consensus size: 16
50812005 TAGACTTTGT
**
50812015 TATATACATACTCATA
1 TATATACATACTTTTA
*
50812031 T-TTTACATAC-TTTA
1 TATATACATACTTTTA
* *
50812045 TA-ATTCAT-C-TATA
1 TATATACATACTTTTA
*
50812058 TATATACATACTTTCA
1 TATATACATACTTTTA
**
50812074 TATATACATGTTTTTA
1 TATATACATACTTTTA
50812090 TATAT
1 TATAT
50812095 TTCTATTATT
Statistics
Matches: 48, Mismatches: 12, Indels: 8
0.71 0.18 0.12
Matches are distributed among these distances:
13 6 0.12
14 12 0.25
15 9 0.19
16 21 0.44
ACGTcount: A:0.36, C:0.14, G:0.01, T:0.49
Consensus pattern (16 bp):
TATATACATACTTTTA
Found at i:50814973 original size:46 final size:45
Alignment explanation
Indices: 50814815--50815025 Score: 126
Period size: 46 Copynumber: 4.5 Consensus size: 45
50814805 ATTGACGGAA
* * *
50814815 AAGACCATGGTT-GGACCATGGCAATATGTAATATGTGATTTCCGTAT
1 AAGACCATGGTTGGGA-TATGGCATTATGTGATATGTGA--TCCGTAT
** * * * *
50814862 AAGACCATATTTGGGATATGGCATCA-ATGATATGTGCTAT-TGTGT
1 AAGACCATGGTTGGGATATGGCATTATGTGATATGTG--ATCCGTAT
* *
50814907 AAGACCAT-GTCTAGGATATGGCATTAGTGTGATACGTGATCCGTAT
1 AAGACCATGGT-TGGGATATGGCATTA-TGTGATATGTGATCCGTAT
* * * * *
50814953 AAGACCATGGTTGGGCTATGGCATCGGTATGTGTTATGTGATTACATGT
1 AAGACCATGGTTGGGATATGGCAT---TATGTGATATGTGA-TCCGTAT
*
50815002 AAGACCATAGTT-GGACTATGGCAT
1 AAGACCATGGTTGGGA-TATGGCAT
50815026 CGAGAAAACG
Statistics
Matches: 126, Mismatches: 25, Indels: 24
0.72 0.14 0.14
Matches are distributed among these distances:
44 1 0.01
45 26 0.21
46 31 0.25
47 27 0.21
48 16 0.13
49 25 0.20
ACGTcount: A:0.28, C:0.14, G:0.26, T:0.32
Consensus pattern (45 bp):
AAGACCATGGTTGGGATATGGCATTATGTGATATGTGATCCGTAT
Found at i:50817811 original size:151 final size:150
Alignment explanation
Indices: 50817523--50817822 Score: 492
Period size: 151 Copynumber: 2.0 Consensus size: 150
50817513 AAGGTTTTAA
50817523 GTGAAATTGTGACTAAGTGAATCCGGGTGCTGGTCTTAAGTTCTACCAGTGGCTGGGTATACCGG
1 GTGAAATTGTGACTAAGTGAATCCGGGTGCTGGTCTTAAGTTCTACCAGTGGCTGGGTATACCGG
* *
50817588 CATGTGTTGCAGATACCTGAAAGCTTGTGTAAGCAGCACTAAGTAGTAACGAATGACTGACAGCT
66 CATGTGTTGCAGATACCTGAAAGCTTGTGTAAGAAGCACTAAGTAGTAACGAAAGACTGACAGCT
*
50817653 TGTGTGAGCAGGCCCGTGAT
131 TGTGTGAGCAGACCCGTGAT
*
50817673 GTGAAATTGTGACTAAAGTGAATTCGGGTGCTGGTCTTAAGTTCTACCAGTGGCTGGGTATACCG
1 GTGAAATTGTGACT-AAGTGAATCCGGGTGCTGGTCTTAAGTTCTACCAGTGGCTGGGTATACCG
** * * * * *
50817738 GCATGTGTTGTGGATACTTGACAGCTTGTGTGAGAAGCACTGAGTAGTAAGGAAAGACTGACAGC
65 GCATGTGTTGCAGATACCTGAAAGCTTGTGTAAGAAGCACTAAGTAGTAACGAAAGACTGACAGC
50817803 TTGTGTGAGCAGACCCGTGA
130 TTGTGTGAGCAGACCCGTGA
50817823 AAGTGAATAG
Statistics
Matches: 138, Mismatches: 11, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
150 14 0.10
151 124 0.90
ACGTcount: A:0.25, C:0.17, G:0.31, T:0.27
Consensus pattern (150 bp):
GTGAAATTGTGACTAAGTGAATCCGGGTGCTGGTCTTAAGTTCTACCAGTGGCTGGGTATACCGG
CATGTGTTGCAGATACCTGAAAGCTTGTGTAAGAAGCACTAAGTAGTAACGAAAGACTGACAGCT
TGTGTGAGCAGACCCGTGAT
Found at i:50824864 original size:165 final size:163
Alignment explanation
Indices: 50824622--50824960 Score: 588
Period size: 165 Copynumber: 2.1 Consensus size: 163
50824612 TACTTCCCTT
*
50824622 AGACTTTGGAGTAGACATTTGTATGCCACTTGTGGGCCTTGGATTATATGTTCCAATTGCGAGCA
1 AGACTTTGGAGTAGACATTTGTATGCCACTTGTGGGCCTTGGATTATATCTTCCAATTGCGAGCA
* *
50824687 ACTCTTTATCTTCAAAGTTTGCAATTGTCCAAGACTATTAGCAACTGACATTAGGAAGATATATT
66 ACTCTTTATCTTCAAAGTATGCAATTGCCCAAGACTATTAGCAACTGACATTAGGAAG--ATATT
*
50824752 TCAAATTATTGCATCTCTTTATTTCAACAATCTTC
129 TCAAATTATTGCATCTCTCTATTTCAACAATCTTC
*
50824787 AGACTTTGGAGTAGACATTTGTATGCCACTTGTGGGTCTTGGATTATATCTTCCAATTGCGAGCA
1 AGACTTTGGAGTAGACATTTGTATGCCACTTGTGGGCCTTGGATTATATCTTCCAATTGCGAGCA
* *
50824852 ACTCTTTATCTTCAAAGTATGCAATTGCCCAAGGCTATTAGCAACTGACATTGGGAAGATATTTC
66 ACTCTTTATCTTCAAAGTATGCAATTGCCCAAGACTATTAGCAACTGACATTAGGAAGATATTTC
*
50824917 AAATTATTGCATCTCTCTATTTCAATAATCTTC
131 AAATTATTGCATCTCTCTATTTCAACAATCTTC
50824950 AGACTTTGGAG
1 AGACTTTGGAG
50824961 GCTTAAATAA
Statistics
Matches: 166, Mismatches: 8, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
163 49 0.30
165 117 0.70
ACGTcount: A:0.28, C:0.18, G:0.17, T:0.36
Consensus pattern (163 bp):
AGACTTTGGAGTAGACATTTGTATGCCACTTGTGGGCCTTGGATTATATCTTCCAATTGCGAGCA
ACTCTTTATCTTCAAAGTATGCAATTGCCCAAGACTATTAGCAACTGACATTAGGAAGATATTTC
AAATTATTGCATCTCTCTATTTCAACAATCTTC
Found at i:50828071 original size:14 final size:15
Alignment explanation
Indices: 50828052--50828084 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
50828042 GTTCAACCAA
50828052 AAAATT-TAATAAAT
1 AAAATTATAATAAAT
*
50828066 AAAATTATAATATAT
1 AAAATTATAATAAAT
50828081 AAAA
1 AAAA
50828085 AGGCCCACAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 6 0.35
15 11 0.65
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (15 bp):
AAAATTATAATAAAT
Found at i:50828137 original size:18 final size:18
Alignment explanation
Indices: 50828114--50828156 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 18
50828104 ATCGAATCCA
*
50828114 AACCCAAGTA-TTCAACCC
1 AACCCAAGTACCT-AACCC
*
50828132 AACCCAATTACCTAACCC
1 AACCCAAGTACCTAACCC
50828150 AACCCAA
1 AACCCAA
50828157 TCTTAAAAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
18 21 0.95
19 1 0.05
ACGTcount: A:0.42, C:0.42, G:0.02, T:0.14
Consensus pattern (18 bp):
AACCCAAGTACCTAACCC
Found at i:50828281 original size:18 final size:18
Alignment explanation
Indices: 50828258--50828317 Score: 84
Period size: 18 Copynumber: 3.3 Consensus size: 18
50828248 ATGTAGTGAC
50828258 TTAATTCGGGTAATTCGG
1 TTAATTCGGGTAATTCGG
* *
50828276 TTAATTCGGGTAATTTGA
1 TTAATTCGGGTAATTCGG
* *
50828294 TTAATTCGGTTAATCCGG
1 TTAATTCGGGTAATTCGG
50828312 TTAATT
1 TTAATT
50828318 TTTAACCAAA
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 36 1.00
ACGTcount: A:0.25, C:0.10, G:0.22, T:0.43
Consensus pattern (18 bp):
TTAATTCGGGTAATTCGG
Found at i:50828306 original size:9 final size:9
Alignment explanation
Indices: 50828258--50828317 Score: 75
Period size: 9 Copynumber: 6.7 Consensus size: 9
50828248 ATGTAGTGAC
50828258 TTAATTCGG
1 TTAATTCGG
*
50828267 GTAATTCGG
1 TTAATTCGG
50828276 TTAATTCGG
1 TTAATTCGG
* * *
50828285 GTAATTTGA
1 TTAATTCGG
50828294 TTAATTCGG
1 TTAATTCGG
*
50828303 TTAATCCGG
1 TTAATTCGG
50828312 TTAATT
1 TTAATT
50828318 TTTAACCAAA
Statistics
Matches: 41, Mismatches: 10, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
9 41 1.00
ACGTcount: A:0.25, C:0.10, G:0.22, T:0.43
Consensus pattern (9 bp):
TTAATTCGG
Found at i:50830556 original size:25 final size:25
Alignment explanation
Indices: 50830519--50830568 Score: 75
Period size: 25 Copynumber: 2.0 Consensus size: 25
50830509 AACGTTTCCA
*
50830519 GCTAGAAGTGTTTTCTC-CCAACGAT
1 GCTAGAAGCGTTTTC-CGCCAACGAT
50830544 GCTAGAAGCGTTTTCCGCCAACGAT
1 GCTAGAAGCGTTTTCCGCCAACGAT
50830569 AACTCCAATG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 1 0.04
25 22 0.96
ACGTcount: A:0.24, C:0.26, G:0.22, T:0.28
Consensus pattern (25 bp):
GCTAGAAGCGTTTTCCGCCAACGAT
Found at i:50835582 original size:14 final size:13
Alignment explanation
Indices: 50835556--50835589 Score: 52
Period size: 14 Copynumber: 2.6 Consensus size: 13
50835546 ATTATGCATT
50835556 TTAATAT-TTATA
1 TTAATATATTATA
50835568 TTAATATATTAATA
1 TTAATATATT-ATA
50835582 TTAATATA
1 TTAATATA
50835590 AAAATATATC
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
12 7 0.35
13 2 0.10
14 11 0.55
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (13 bp):
TTAATATATTATA
Found at i:50835592 original size:46 final size:47
Alignment explanation
Indices: 50835528--50835637 Score: 113
Period size: 46 Copynumber: 2.3 Consensus size: 47
50835518 TGTTCGGATT
*
50835528 TATTAA-ACTAATATT-AAAAT-TATGCATTTTAATATTTATATTA-ATA
1 TATTAATATTAATATTAAAAATATAT-C-TTTTAATATTTAT-TTATATA
*
50835574 TATTAATATTAATA-TAAAAATATATCTTTTAATTTTTATTTATATA
1 TATTAATATTAATATTAAAAATATATCTTTTAATATTTATTTATATA
*
50835620 CATTAATATATAAATATT
1 TATTAATAT-T-AATATT
50835638 TTTATTATTT
Statistics
Matches: 54, Mismatches: 3, Indels: 11
0.79 0.04 0.16
Matches are distributed among these distances:
45 3 0.06
46 30 0.56
47 13 0.24
48 7 0.13
49 1 0.02
ACGTcount: A:0.45, C:0.04, G:0.01, T:0.50
Consensus pattern (47 bp):
TATTAATATTAATATTAAAAATATATCTTTTAATATTTATTTATATA
Found at i:50835596 original size:20 final size:20
Alignment explanation
Indices: 50835556--50835596 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
50835546 ATTATGCATT
* * *
50835556 TTAATATTTATATTAATATA
1 TTAATATTAATATAAAAATA
50835576 TTAATATTAATATAAAAATA
1 TTAATATTAATATAAAAATA
50835596 T
1 T
50835597 ATCTTTTAAT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (20 bp):
TTAATATTAATATAAAAATA
Found at i:50835711 original size:27 final size:27
Alignment explanation
Indices: 50835644--50835719 Score: 82
Period size: 30 Copynumber: 2.7 Consensus size: 27
50835634 TATTTTTATT
* *
50835644 ATTTTATTAT-TTTTTTAAAAGTAATA
1 ATTTTATTTTATTTTTTAAAAATAATA
*
50835670 ATATTAATATATTATTTTTTAAAAATAATA
1 AT-TT--TATTTTATTTTTTAAAAATAATA
50835700 ATTTTATTTTATTGTTTTAA
1 ATTTTATTTTATT-TTTTAA
50835720 TATTTTATAA
Statistics
Matches: 41, Mismatches: 4, Indels: 8
0.77 0.08 0.15
Matches are distributed among these distances:
26 2 0.05
27 10 0.24
28 6 0.15
29 6 0.15
30 17 0.41
ACGTcount: A:0.39, C:0.00, G:0.03, T:0.58
Consensus pattern (27 bp):
ATTTTATTTTATTTTTTAAAAATAATA
Found at i:50841502 original size:41 final size:41
Alignment explanation
Indices: 50841451--50841539 Score: 160
Period size: 41 Copynumber: 2.2 Consensus size: 41
50841441 CAAATATCAC
* *
50841451 CTAATTACATCAAGTACATTAACAACTTAGTTCAAATCTAA
1 CTAAGTACATCAAGTACATTAACAACTTAGTTAAAATCTAA
50841492 CTAAGTACATCAAGTACATTAACAACTTAGTTAAAATCTAA
1 CTAAGTACATCAAGTACATTAACAACTTAGTTAAAATCTAA
50841533 CTAAGTA
1 CTAAGTA
50841540 ACAAAACATT
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
41 46 1.00
ACGTcount: A:0.45, C:0.18, G:0.07, T:0.30
Consensus pattern (41 bp):
CTAAGTACATCAAGTACATTAACAACTTAGTTAAAATCTAA
Found at i:50842829 original size:162 final size:162
Alignment explanation
Indices: 50842657--50843003 Score: 550
Period size: 162 Copynumber: 2.1 Consensus size: 162
50842647 TTGGGAATAG
* * *
50842657 CTCTCTATCTTCAGAGTTTGCAATTGCCCAAGACTATTAGCAACATACATTAGGAAGAGAAAATT
1 CTCTCTATCTTCAGAGTTTGCAATTGCCCAAGACTATTAGAAACACAAATTAGGAAGAGAAAATT
*
50842722 CAATTTATTGCATTCTCTGACTTGTACTTCCCTTAGGCATTGGAAGCTTATGGTTGATACTTGTA
66 CAATTTATTGCATTCTCTGACTTGTAATTCCCTTAGGCATTGGAAGCTTATGGTTGATACTTGTA
* *
50842787 AGTCTTGGATTATTTCTTCCATTCCAAAGCAC
131 AGTCTTGAATTATTTCTTCCATTCCAAAGCAA
* * * *
50842819 CTCTCTATCTTCAGAGTTTGTAATTTCCCAAGACTATTAGAAACACAAATTGGGAAGAGAAATTT
1 CTCTCTATCTTCAGAGTTTGCAATTGCCCAAGACTATTAGAAACACAAATTAGGAAGAGAAAATT
* * *
50842884 CAATTTATTGCATTTTGTGACTTGTAATTCCCTTAGGCATTGGAAGCTTATGGTTGATACTTGTG
66 CAATTTATTGCATTCTCTGACTTGTAATTCCCTTAGGCATTGGAAGCTTATGGTTGATACTTGTA
*
50842949 AGTCTTGAATTATTTCTTCCATTCCAAAGTAA
131 AGTCTTGAATTATTTCTTCCATTCCAAAGCAA
* *
50842981 CTCTCTATCTTCAAAGTTAGCAA
1 CTCTCTATCTTCAGAGTTTGCAA
50843004 ATGAGGCGTA
Statistics
Matches: 168, Mismatches: 17, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
162 168 1.00
ACGTcount: A:0.29, C:0.19, G:0.16, T:0.37
Consensus pattern (162 bp):
CTCTCTATCTTCAGAGTTTGCAATTGCCCAAGACTATTAGAAACACAAATTAGGAAGAGAAAATT
CAATTTATTGCATTCTCTGACTTGTAATTCCCTTAGGCATTGGAAGCTTATGGTTGATACTTGTA
AGTCTTGAATTATTTCTTCCATTCCAAAGCAA
Found at i:50843517 original size:3 final size:3
Alignment explanation
Indices: 50843509--50843547 Score: 78
Period size: 3 Copynumber: 13.0 Consensus size: 3
50843499 AATAATTGAG
50843509 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
50843548 GTCCATTTCC
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 36 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:50844095 original size:88 final size:88
Alignment explanation
Indices: 50843942--50844128 Score: 365
Period size: 88 Copynumber: 2.1 Consensus size: 88
50843932 TATTTGATTA
*
50843942 AATCGAGTCGAATCAAGTAAAAACATTTTGAGTTAATTGGATTAACAAATTCTATTTTATTATTG
1 AATCGAGTCGAATCAAGTAAAAACATTTTGAGTTAATTGGATTAACAAATTCTATTTTATCATTG
50844007 TAATTCAATTTAAAATTTTTTCG
66 TAATTCAATTTAAAATTTTTTCG
50844030 AATCGAGTCGAATCAAGTAAAAACATTTTGAGTTAATTGGATTAACAAATTCTATTTTATCATTG
1 AATCGAGTCGAATCAAGTAAAAACATTTTGAGTTAATTGGATTAACAAATTCTATTTTATCATTG
50844095 TAATTCAATTTAAAATTTTTTCG
66 TAATTCAATTTAAAATTTTTTCG
50844118 AATCGAGTCGA
1 AATCGAGTCGA
50844129 GTGAAATGAA
Statistics
Matches: 98, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
88 98 1.00
ACGTcount: A:0.37, C:0.10, G:0.12, T:0.40
Consensus pattern (88 bp):
AATCGAGTCGAATCAAGTAAAAACATTTTGAGTTAATTGGATTAACAAATTCTATTTTATCATTG
TAATTCAATTTAAAATTTTTTCG
Found at i:50844586 original size:18 final size:18
Alignment explanation
Indices: 50844560--50844596 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
50844550 AATAATATGG
*
50844560 TATTCGAGTTATTCGAAT
1 TATTCGAGTTATTCAAAT
*
50844578 TATTTGAGTTATTCAAAT
1 TATTCGAGTTATTCAAAT
50844596 T
1 T
50844597 GTAAAATTCA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.30, C:0.08, G:0.14, T:0.49
Consensus pattern (18 bp):
TATTCGAGTTATTCAAAT
Found at i:50848379 original size:16 final size:16
Alignment explanation
Indices: 50848358--50848388 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
50848348 AAGGTTATGC
*
50848358 TTTAGGGGTTAGGGGA
1 TTTAGGGGTAAGGGGA
50848374 TTTAGGGGTAAGGGG
1 TTTAGGGGTAAGGGG
50848389 TTAGGGGGTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.19, C:0.00, G:0.52, T:0.29
Consensus pattern (16 bp):
TTTAGGGGTAAGGGGA
Found at i:50851347 original size:23 final size:23
Alignment explanation
Indices: 50851314--50851360 Score: 85
Period size: 23 Copynumber: 2.0 Consensus size: 23
50851304 AATATTATAC
50851314 ATAACTGACAACTTACATAACTT
1 ATAACTGACAACTTACATAACTT
*
50851337 ATAACTTACAACTTACATAACTT
1 ATAACTGACAACTTACATAACTT
50851360 A
1 A
50851361 CATTTTTTTA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.45, C:0.21, G:0.02, T:0.32
Consensus pattern (23 bp):
ATAACTGACAACTTACATAACTT
Found at i:50851356 original size:16 final size:16
Alignment explanation
Indices: 50851311--50851363 Score: 56
Period size: 16 Copynumber: 3.3 Consensus size: 16
50851301 ATTAATATTA
*
50851311 TACATAACTGACAACT
1 TACATAACTTACAACT
*
50851327 TACATAACTTATAACT
1 TACATAACTTACAACT
50851343 TAC--AACTTACATAACT
1 TACATAACTTAC--AACT
50851359 TACAT
1 TACAT
50851364 TTTTTTAATT
Statistics
Matches: 30, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
14 6 0.20
16 24 0.80
ACGTcount: A:0.43, C:0.23, G:0.02, T:0.32
Consensus pattern (16 bp):
TACATAACTTACAACT
Found at i:50851511 original size:22 final size:22
Alignment explanation
Indices: 50851486--50851640 Score: 68
Period size: 22 Copynumber: 7.3 Consensus size: 22
50851476 TATACTGCAC
50851486 TTACATTAATATTATACATAAA
1 TTACATTAATATTATACATAAA
*
50851508 TTACA-TAA-CTTA-A-AT-AA
1 TTACATTAATATTATACATAAA
* *
50851525 TTA-ATATACATAACT-TACATAAC
1 TTACAT-TA-AT-ATTATACATAAA
*
50851548 TTACATTAATATGATACATAAA
1 TTACATTAATATTATACATAAA
*
50851570 TTACA-TAACTTAGTTA-A-TTAATA
1 TTACATTAA--TA-TTATACATAA-A
*
50851593 TT--A-TACATATGT-TACATAAC
1 TTACATTA-ATAT-TATACATAAA
*
50851613 TTACATTAATATGATACATAAA
1 TTACATTAATATTATACATAAA
50851635 TTACAT
1 TTACAT
50851641 AACTTAGTTA
Statistics
Matches: 98, Mismatches: 13, Indels: 44
0.63 0.08 0.28
Matches are distributed among these distances:
16 1 0.01
17 5 0.05
18 4 0.04
19 3 0.03
20 9 0.09
21 15 0.15
22 43 0.44
23 14 0.14
24 4 0.04
ACGTcount: A:0.47, C:0.12, G:0.03, T:0.39
Consensus pattern (22 bp):
TTACATTAATATTATACATAAA
Found at i:50851533 original size:31 final size:31
Alignment explanation
Indices: 50851484--50851825 Score: 245
Period size: 31 Copynumber: 10.5 Consensus size: 31
50851474 GTTATACTGC
*
50851484 ACTTACATTAA-TATTATACATAAATTACATA
1 ACTTA-ATTAATTAATATACATAAATTACATA
* *
50851515 ACTTAAATAATTAATATACATAACTTACATA
1 ACTTAATTAATTAATATACATAAATTACATA
50851546 ACTTACATTAA-T-ATGATACATAAATTACATA
1 ACTTA-ATTAATTAAT-ATACATAAATTACATA
* **
50851577 ACTTAGTTAATTAATATTATACATATGTTACATA
1 ACTTAATTAATT-A-A-TATACATAAATTACATA
50851611 ACTTACATTAA-T-ATGATACATAAATTACATA
1 ACTTA-ATTAATTAAT-ATACATAAATTACATA
* *
50851642 ACTTAGTTAATTAATATTATACATAACTTAC--A
1 ACTTAATTAATT-A-A-TATACATAAATTACATA
* * *
50851674 ACTTACA-TAACTT-ACA-ACTTTCAATTTACATA
1 ACTTA-ATTAA-TTAATATAC-AT-AAATTACATA
** *
50851706 ACTTACATTTTTTTAATTATTCATAAATTACATA
1 ACTTA-A-TTAATTAA-TATACATAAATTACATA
*
50851740 ACTTAATTAGTTAATATACATAAATTACATA
1 ACTTAATTAATTAATATACATAAATTACATA
50851771 ACTTAATTAATTAATTAATATTATACATAAATTACATA
1 AC----TTAATTAATT-A-A-TATACATAAATTACATA
*
50851809 ACTTAGTTAATTAATAT
1 ACTTAATTAATTAATAT
50851826 TATACATAAC
Statistics
Matches: 250, Mismatches: 28, Indels: 66
0.73 0.08 0.19
Matches are distributed among these distances:
28 2 0.01
29 2 0.01
30 22 0.09
31 92 0.37
32 28 0.11
33 6 0.02
34 59 0.24
35 17 0.07
36 2 0.01
37 1 0.00
38 19 0.08
ACGTcount: A:0.46, C:0.12, G:0.02, T:0.40
Consensus pattern (31 bp):
ACTTAATTAATTAATATACATAAATTACATA
Found at i:50851626 original size:65 final size:65
Alignment explanation
Indices: 50851484--50851840 Score: 331
Period size: 65 Copynumber: 5.4 Consensus size: 65
50851474 GTTATACTGC
* **
50851484 ACTTACATTAATATTATACATAAATTACATAACTTAAATAATT-A-A-TATACATAACTTACATA
1 ACTTACATTAATATGATACATAAATTACATAACTTAGTTAATTAATATTATACATAACTTACATA
**
50851546 ACTTACATTAATATGATACATAAATTACATAACTTAGTTAATTAATATTATACATATGTTACATA
1 ACTTACATTAATATGATACATAAATTACATAACTTAGTTAATTAATATTATACATAACTTACATA
50851611 ACTTACATTAATATGATACATAAATTACATAACTTAGTTAATTAATATTATACATAACTTAC--A
1 ACTTACATTAATATGATACATAAATTACATAACTTAGTTAATTAATATTATACATAACTTACATA
* * * * ** * * *
50851674 ACTTACA-TAACT-T-ACAACTTTCAATTTACATAACTTACATTTTTTTA-ATTATTCATAAATT
1 ACTTACATTAA-TATGA-TAC-AT-AAATTACATAACTTA-GTTAATTAATATTATACATAACTT
50851735 ACATA
61 ACATA
* * *
50851740 ACTTA-ATTAGTTAAT-ATACATAAATTACATAACTTAATTAATTAATTAATATTATACATAAAT
1 ACTTACATTA-AT-ATGATACATAAATTACATAAC----TTAGTTAATTAATATTATACATAACT
50851803 TACATA
60 TACATA
* * *
50851809 ACTTAGTTAATTAATATTATACATAACTTACA
1 ACTTA---CATTAATATGATACATAAATTACA
50851841 ACTTACATAA
Statistics
Matches: 245, Mismatches: 26, Indels: 38
0.79 0.08 0.12
Matches are distributed among these distances:
61 1 0.00
62 46 0.19
63 11 0.04
64 29 0.12
65 92 0.38
66 10 0.04
67 2 0.01
68 8 0.03
69 26 0.11
71 2 0.01
72 14 0.06
73 4 0.02
ACGTcount: A:0.46, C:0.12, G:0.02, T:0.40
Consensus pattern (65 bp):
ACTTACATTAATATGATACATAAATTACATAACTTAGTTAATTAATATTATACATAACTTACATA
Found at i:50851682 original size:16 final size:16
Alignment explanation
Indices: 50851661--50851693 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
50851651 ATTAATATTA
50851661 TACATAACTTACAACT
1 TACATAACTTACAACT
50851677 TACATAACTTACAACT
1 TACATAACTTACAACT
50851693 T
1 T
50851694 TCAATTTACA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.42, C:0.24, G:0.00, T:0.33
Consensus pattern (16 bp):
TACATAACTTACAACT
Found at i:50851685 original size:9 final size:9
Alignment explanation
Indices: 50851500--50852028 Score: 86
Period size: 9 Copynumber: 61.3 Consensus size: 9
50851490 ATTAATATTA
*
50851500 TACATAAAT
1 TACATAACT
50851509 TACATAACT
1 TACATAACT
*
50851518 TAAATAA-T
1 TACATAACT
50851526 TA-AT-A--
1 TACATAACT
50851531 TACATAACT
1 TACATAACT
50851540 TACATAACT
1 TACATAACT
*
50851549 TACATTAATAT
1 TACA-TAA-CT
*
50851560 GATACATAAAT
1 --TACATAACT
50851571 TACATAACT
1 TACATAACT
**
50851580 TAGTTAA-T
1 TACATAACT
*
50851588 TA-AT-ATT
1 TACATAACT
**
50851595 ATACATATGT
1 -TACATAACT
50851605 TACATAACT
1 TACATAACT
*
50851614 TACATTAATAT
1 TACA-TAA-CT
*
50851625 GATACATAAAT
1 --TACATAACT
50851636 TACATAACT
1 TACATAACT
**
50851645 TAGTTAA-T
1 TACATAACT
*
50851653 TA-AT-ATT
1 TACATAACT
50851660 ATACATAACT
1 -TACATAACT
50851670 TAC--AACT
1 TACATAACT
50851677 TACATAACT
1 TACATAACT
50851686 TAC--AACT
1 TACATAACT
* *
50851693 TTC--AATT
1 TACATAACT
50851700 TACATAACT
1 TACATAACT
***
50851709 TACATTTTTT
1 TACA-TAACT
*
50851719 TA-ATTA-T
1 TACATAACT
*
50851726 T-CATAAAT
1 TACATAACT
50851734 TACATAACT
1 TACATAACT
* *
50851743 TA-ATTAGT
1 TACATAACT
50851751 TA-AT-A--
1 TACATAACT
*
50851756 TACATAAAT
1 TACATAACT
50851765 TACATAACT
1 TACATAACT
50851774 TA-ATTAA-T
1 TACA-TAACT
*
50851782 TA-ATTAATATT
1 TACA-T-A-ACT
*
50851793 ATACATAAAT
1 -TACATAACT
50851803 TACATAACT
1 TACATAACT
**
50851812 TAGTTAA-T
1 TACATAACT
*
50851820 TA-AT-ATT
1 TACATAACT
50851827 ATACATAACT
1 -TACATAACT
50851837 TAC--AACT
1 TACATAACT
50851844 TACATAACT
1 TACATAACT
***
50851853 TACAATTTTT
1 TAC-ATAACT
*
50851863 TA-ATTA-T
1 TACATAACT
* *
50851870 T-CGTAAAT
1 TACATAACT
50851878 TACATAACT
1 TACATAACT
* *
50851887 TACTTAATT
1 TACATAACT
*
50851896 TTCATAA--
1 TACATAACT
*
50851903 TAAATAACT
1 TACATAACT
*
50851912 TACATAACC
1 TACATAACT
50851921 TAC--AACT
1 TACATAACT
50851928 TACATAACT
1 TACATAACT
* ** *
50851937 TATACGACA
1 TACATAACT
50851946 TACATAACT
1 TACATAACT
* *
50851955 TACATAGCA
1 TACATAACT
*
50851964 TA-ATTTGACT
1 TACA--TAACT
*
50851974 AATACACAACT
1 --TACATAACT
*
50851985 TACATAATT
1 TACATAACT
*
50851994 TTCATAA--
1 TACATAACT
*
50852001 TAAATAACT
1 TACATAACT
50852010 TACATAA--
1 TACATAACT
50852017 TACATAACT
1 TACATAACT
50852026 TAC
1 TAC
50852029 GTAGCTTAGT
Statistics
Matches: 385, Mismatches: 74, Indels: 122
0.66 0.13 0.21
Matches are distributed among these distances:
5 4 0.01
6 8 0.02
7 68 0.18
8 43 0.11
9 205 0.53
10 25 0.06
11 11 0.03
12 11 0.03
13 10 0.03
ACGTcount: A:0.45, C:0.14, G:0.02, T:0.39
Consensus pattern (9 bp):
TACATAACT
Found at i:50851702 original size:23 final size:23
Alignment explanation
Indices: 50851666--50851712 Score: 76
Period size: 23 Copynumber: 2.0 Consensus size: 23
50851656 TATTATACAT
50851666 AACTTACAACTTACATAACTTAC
1 AACTTACAACTTACATAACTTAC
* *
50851689 AACTTTCAATTTACATAACTTAC
1 AACTTACAACTTACATAACTTAC
50851712 A
1 A
50851713 TTTTTTTAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.43, C:0.23, G:0.00, T:0.34
Consensus pattern (23 bp):
AACTTACAACTTACATAACTTAC
Found at i:50852007 original size:16 final size:16
Alignment explanation
Indices: 50851996--50852028 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
50851986 ACATAATTTT
50851996 CATAATAAATAACTTA
1 CATAATAAATAACTTA
*
50852012 CATAATACATAACTTA
1 CATAATAAATAACTTA
50852028 C
1 C
50852029 GTAGCTTAGT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.52, C:0.18, G:0.00, T:0.30
Consensus pattern (16 bp):
CATAATAAATAACTTA
Found at i:50857577 original size:66 final size:65
Alignment explanation
Indices: 50857456--50857621 Score: 199
Period size: 66 Copynumber: 2.5 Consensus size: 65
50857446 TGAGCAAATT
* * * *
50857456 ACACAACTTAAAGCAGAAGCAACATCGAGAGAAGCTGAGGTTCAAAAAAGATATGAAGAACTCCA
1 ACACAACTTAAAGCAGATGCAGCAGCGAGAGAAGATGAGGTTCAAAAAAGATATGAAGAACTCCA
* * * *
50857521 GCTACAACTGAAAGTAGATGCAGCAGCGAGAGAAGATGAGGTTTAACAAAAG-TATGAAGAACTC
1 AC-ACAACTTAAAGCAGATGCAGCAGCGAGAGAAGATGAGGTTCAA-AAAAGATATGAAGAACTC
50857585 CA
64 CA
* * *
50857587 ACAGCAGCTTAAAGCAGATGCGGCAGCAAGAGAAG
1 ACA-CAACTTAAAGCAGATGCAGCAGCGAGAGAAG
50857622 CAGAAGTGGC
Statistics
Matches: 84, Mismatches: 14, Indels: 5
0.82 0.14 0.05
Matches are distributed among these distances:
65 2 0.02
66 77 0.92
67 5 0.06
ACGTcount: A:0.44, C:0.17, G:0.25, T:0.14
Consensus pattern (65 bp):
ACACAACTTAAAGCAGATGCAGCAGCGAGAGAAGATGAGGTTCAAAAAAGATATGAAGAACTCCA
Found at i:50857623 original size:21 final size:21
Alignment explanation
Indices: 50857598--50857642 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
50857588 CAGCAGCTTA
*
50857598 AAGCAGATGCGGCAGCAAGAG
1 AAGCAGAAGCGGCAGCAAGAG
* *
50857619 AAGCAGAAGTGGCAGCGAGAG
1 AAGCAGAAGCGGCAGCAAGAG
50857640 AAG
1 AAG
50857643 TACAGGCTGC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.40, C:0.16, G:0.40, T:0.04
Consensus pattern (21 bp):
AAGCAGAAGCGGCAGCAAGAG
Found at i:50857670 original size:21 final size:21
Alignment explanation
Indices: 50857646--50857710 Score: 87
Period size: 21 Copynumber: 3.1 Consensus size: 21
50857636 AGAGAAGTAC
50857646 AGGCTGCAACGAGGGAAGCAG
1 AGGCTGCAACGAGGGAAGCAG
*
50857667 AGGCT-AAAGCGAGGGAAGCAG
1 AGGCTGCAA-CGAGGGAAGCAG
**
50857688 AGGCTGCAGTGAGGGAAGCAG
1 AGGCTGCAACGAGGGAAGCAG
50857709 AG
1 AG
50857711 CAGCGTCAAA
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
20 2 0.05
21 35 0.92
22 1 0.03
ACGTcount: A:0.34, C:0.15, G:0.45, T:0.06
Consensus pattern (21 bp):
AGGCTGCAACGAGGGAAGCAG
Found at i:50858231 original size:43 final size:41
Alignment explanation
Indices: 50858037--50858234 Score: 166
Period size: 43 Copynumber: 4.7 Consensus size: 41
50858027 CGTTTTTTTT
* * *
50858037 TAAAGATAAGGGTCTTTAGCGGCGTTTGTGGAAAAAGCGCCAC
1 TAAAGATCAGGGTCTTTAGCGGCGTTTGT-G-CAAAGCGCCGC
** * *
50858080 TAAAGATCATAGTATTTAGTGGCGTTTGTGGTCAAAGCGCCGC
1 TAAAGATCAGGGTCTTTAGCGGCGTTTGT-G-CAAAGCGCCGC
* ***
50858123 TAAAGATCAGGGTCTTTAGCGGCGCTTCCACTAAAGCGCCGC
1 TAAAGATCAGGGTCTTTAGCGGCGTTTGTGC-AAAGCGCCGC
* * *
50858165 TAAAGGTCTTA-GG-CTTCAGCGGCGTTTGTGCAAGATGCACCGC
1 TAAAGATC--AGGGTCTTTAGCGGCGTTTGTGCAA-A-GCGCCGC
*
50858208 TAAAGATCAGGGTCTTTAACGGCGTTT
1 TAAAGATCAGGGTCTTTAGCGGCGTTT
50858235 TTTTCTAAAA
Statistics
Matches: 122, Mismatches: 26, Indels: 14
0.75 0.16 0.09
Matches are distributed among these distances:
41 4 0.03
42 33 0.27
43 84 0.69
44 1 0.01
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.26
Consensus pattern (41 bp):
TAAAGATCAGGGTCTTTAGCGGCGTTTGTGCAAAGCGCCGC
Found at i:50859318 original size:13 final size:13
Alignment explanation
Indices: 50859300--50859325 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
50859290 GGATCAATTC
50859300 GTCATAGTCTTTA
1 GTCATAGTCTTTA
50859313 GTCATAGTCTTTA
1 GTCATAGTCTTTA
50859326 TCGATAATAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.23, C:0.15, G:0.15, T:0.46
Consensus pattern (13 bp):
GTCATAGTCTTTA
Found at i:50859713 original size:16 final size:18
Alignment explanation
Indices: 50859692--50859726 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
50859682 GCTTTGAAAA
50859692 ACTCAAG-T-CTGTTCTG
1 ACTCAAGCTCCTGTTCTG
50859708 ACTCAAGCTCCTGTTCTG
1 ACTCAAGCTCCTGTTCTG
50859726 A
1 A
50859727 TACAACCTGA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 7 0.41
17 1 0.06
18 9 0.53
ACGTcount: A:0.20, C:0.29, G:0.17, T:0.34
Consensus pattern (18 bp):
ACTCAAGCTCCTGTTCTG
Found at i:50862129 original size:15 final size:15
Alignment explanation
Indices: 50862109--50862142 Score: 59
Period size: 15 Copynumber: 2.3 Consensus size: 15
50862099 GATTTAGTTT
*
50862109 TTTTTTTAATTTTTA
1 TTTTTTTAATTTTAA
50862124 TTTTTTTAATTTTAA
1 TTTTTTTAATTTTAA
50862139 TTTT
1 TTTT
50862143 GATTTTTCCC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.21, C:0.00, G:0.00, T:0.79
Consensus pattern (15 bp):
TTTTTTTAATTTTAA
Found at i:50864223 original size:20 final size:20
Alignment explanation
Indices: 50864199--50864244 Score: 58
Period size: 20 Copynumber: 2.3 Consensus size: 20
50864189 TTTATGTTAT
50864199 TTTATTAAATTATGT-TTTA
1 TTTATTAAATTATGTATTTA
* *
50864218 TGTTATTAATTTATTTATTTA
1 T-TTATTAAATTATGTATTTA
50864239 TTTATT
1 TTTATT
50864245 TTAAGTAAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
19 1 0.04
20 17 0.74
21 5 0.22
ACGTcount: A:0.28, C:0.00, G:0.04, T:0.67
Consensus pattern (20 bp):
TTTATTAAATTATGTATTTA
Found at i:50867789 original size:7 final size:7
Alignment explanation
Indices: 50867774--50867817 Score: 61
Period size: 7 Copynumber: 6.3 Consensus size: 7
50867764 TGAGTACTTC
*
50867774 TGATCAG
1 TGATAAG
50867781 TGATAAG
1 TGATAAG
*
50867788 TGACAAG
1 TGATAAG
*
50867795 TGACAAG
1 TGATAAG
50867802 TGATAAG
1 TGATAAG
50867809 TGATAAG
1 TGATAAG
50867816 TG
1 TG
50867818 GTAGCTTAGC
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
7 34 1.00
ACGTcount: A:0.39, C:0.07, G:0.30, T:0.25
Consensus pattern (7 bp):
TGATAAG
Found at i:50867873 original size:50 final size:50
Alignment explanation
Indices: 50867793--50868014 Score: 381
Period size: 50 Copynumber: 4.4 Consensus size: 50
50867783 ATAAGTGACA
*
50867793 AGTGACAAGTGATAAGTGATAAGTGGTAGCTTAGCTACACTTATCTGATC
1 AGTGACAAGTGACAAGTGATAAGTGGTAGCTTAGCTACACTTATCTGATC
* * *
50867843 AGTGACATGTGACAAGTGATAAGTGATAGCTTAGCTACATTTATCTGATC
1 AGTGACAAGTGACAAGTGATAAGTGGTAGCTTAGCTACACTTATCTGATC
*
50867893 AGTGACAAGTGACAAGTGATAAGTGGTAGCTTAGCTACACTTATCTGATT
1 AGTGACAAGTGACAAGTGATAAGTGGTAGCTTAGCTACACTTATCTGATC
* *
50867943 AGTGACAAGTGACAAGTTATAAGTGGTATCTTAGCTACACTTATCTGATC
1 AGTGACAAGTGACAAGTGATAAGTGGTAGCTTAGCTACACTTATCTGATC
50867993 AGTGACAAGTGACAAGTGATAA
1 AGTGACAAGTGACAAGTGATAA
50868015 ATGTGATTCG
Statistics
Matches: 160, Mismatches: 12, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
50 160 1.00
ACGTcount: A:0.33, C:0.14, G:0.23, T:0.30
Consensus pattern (50 bp):
AGTGACAAGTGACAAGTGATAAGTGGTAGCTTAGCTACACTTATCTGATC
Found at i:50868828 original size:18 final size:18
Alignment explanation
Indices: 50868805--50868849 Score: 60
Period size: 18 Copynumber: 2.7 Consensus size: 18
50868795 TCAAATTTAT
50868805 CAAGTTTTATTTCAAAAA
1 CAAGTTTTATTTCAAAAA
*
50868823 CAAGTTTTA-CTCAAAAA
1 CAAGTTTTATTTCAAAAA
50868840 C-A-TTTTATTT
1 CAAGTTTTATTT
50868850 TTTTTATATC
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
15 5 0.21
16 2 0.08
17 8 0.33
18 9 0.38
ACGTcount: A:0.40, C:0.13, G:0.04, T:0.42
Consensus pattern (18 bp):
CAAGTTTTATTTCAAAAA
Found at i:50868838 original size:17 final size:18
Alignment explanation
Indices: 50868805--50868841 Score: 58
Period size: 17 Copynumber: 2.1 Consensus size: 18
50868795 TCAAATTTAT
*
50868805 CAAGTTTTATTTCAAAAA
1 CAAGTTTTATCTCAAAAA
50868823 CAAGTTTTA-CTCAAAAA
1 CAAGTTTTATCTCAAAAA
50868840 CA
1 CA
50868842 TTTTATTTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 9 0.50
18 9 0.50
ACGTcount: A:0.46, C:0.16, G:0.05, T:0.32
Consensus pattern (18 bp):
CAAGTTTTATCTCAAAAA
Found at i:50872249 original size:17 final size:17
Alignment explanation
Indices: 50872229--50872263 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
50872219 TTTTAAAAAG
*
50872229 TAGTATTTTTATCAAAT
1 TAGTATTTTCATCAAAT
50872246 TAGTATTTTCATCAAAT
1 TAGTATTTTCATCAAAT
50872263 T
1 T
50872264 TTGCTTAAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.34, C:0.09, G:0.06, T:0.51
Consensus pattern (17 bp):
TAGTATTTTCATCAAAT
Found at i:50873782 original size:25 final size:23
Alignment explanation
Indices: 50873748--50873796 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 23
50873738 CCCGTCGGTT
50873748 AAAACTAGTTATTTTTCCTTTTAA
1 AAAACTAGTTATTTTT-CTTTTAA
* *
50873772 AAAATCTAGTTCTTTTTTTTTTAA
1 AAAA-CTAGTTATTTTTCTTTTAA
50873796 A
1 A
50873797 GTAATGTTTT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
24 11 0.50
25 11 0.50
ACGTcount: A:0.33, C:0.10, G:0.04, T:0.53
Consensus pattern (23 bp):
AAAACTAGTTATTTTTCTTTTAA
Found at i:50873991 original size:17 final size:18
Alignment explanation
Indices: 50873969--50874002 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
50873959 ACATACATTA
50873969 ATATATA-ATTATTTTTT
1 ATATATATATTATTTTTT
*
50873986 ATATATATATTCTTTTT
1 ATATATATATTATTTTT
50874003 CTCCTTTCCC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.32, C:0.03, G:0.00, T:0.65
Consensus pattern (18 bp):
ATATATATATTATTTTTT
Found at i:50874272 original size:18 final size:18
Alignment explanation
Indices: 50874235--50874270 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
50874225 ATTATTTATC
*
50874235 TAATAAATATCTTTTAAA
1 TAATAAATATCTCTTAAA
50874253 TAATAAATATCTACTTAA
1 TAATAAATATCT-CTTAA
50874271 TATACAAATA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 12 0.75
19 4 0.25
ACGTcount: A:0.50, C:0.08, G:0.00, T:0.42
Consensus pattern (18 bp):
TAATAAATATCTCTTAAA
Found at i:50875966 original size:19 final size:18
Alignment explanation
Indices: 50875934--50875980 Score: 58
Period size: 19 Copynumber: 2.6 Consensus size: 18
50875924 TTACATTTGA
*
50875934 TTTAGTTTTTATTTAATT
1 TTTAATTTTTATTTAATT
*
50875952 TTTAATTTTTAATTTTATT
1 TTTAATTTTT-ATTTAATT
*
50875971 TTTGATTTTT
1 TTTAATTTTT
50875981 CCCAAAACTC
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
18 9 0.36
19 16 0.64
ACGTcount: A:0.21, C:0.00, G:0.04, T:0.74
Consensus pattern (18 bp):
TTTAATTTTTATTTAATT
Found at i:50878158 original size:29 final size:29
Alignment explanation
Indices: 50878065--50878157 Score: 98
Period size: 29 Copynumber: 3.2 Consensus size: 29
50878055 AATTTTTTTG
*
50878065 CATTTTGACCCCTAAACTTTTTAAAATTA
1 CATTTTGACCCCTAAACTTTTTTAAATTA
*** *
50878094 CACCATAACCCCTAAACTTTTTTAAATTA
1 CATTTTGACCCCTAAACTTTTTTAAATTA
*
50878123 CATTTTGACCCTTAAA-TTTTCTTAAAATTA
1 CATTTTGACCCCTAAACTTTT-TT-AAATTA
*
50878153 TATTT
1 CATTT
50878158 GGCCCCAAAA
Statistics
Matches: 51, Mismatches: 11, Indels: 3
0.78 0.17 0.05
Matches are distributed among these distances:
28 4 0.08
29 37 0.73
30 10 0.20
ACGTcount: A:0.34, C:0.20, G:0.02, T:0.43
Consensus pattern (29 bp):
CATTTTGACCCCTAAACTTTTTTAAATTA
Found at i:50878425 original size:10 final size:10
Alignment explanation
Indices: 50878410--50878448 Score: 53
Period size: 10 Copynumber: 3.8 Consensus size: 10
50878400 CAGCAAAAGA
50878410 AAGAGGAAGG
1 AAGAGGAAGG
50878420 AAGAGGAAGG
1 AAGAGGAAGG
50878430 AA-AGGAAGAG
1 AAGAGGAAG-G
50878440 AAGGAGGAA
1 AA-GAGGAA
50878449 AAGATGGCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
9 6 0.23
10 15 0.58
12 5 0.19
ACGTcount: A:0.54, C:0.00, G:0.46, T:0.00
Consensus pattern (10 bp):
AAGAGGAAGG
Found at i:50878513 original size:3 final size:3
Alignment explanation
Indices: 50878505--50878539 Score: 63
Period size: 3 Copynumber: 12.0 Consensus size: 3
50878495 CCTAGGGCTT
50878505 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA -AA GAA
1 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA
50878540 AGCAGAAAGA
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
2 2 0.06
3 29 0.94
ACGTcount: A:0.69, C:0.00, G:0.31, T:0.00
Consensus pattern (3 bp):
GAA
Found at i:50878761 original size:22 final size:23
Alignment explanation
Indices: 50878736--50878778 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
50878726 CCGCAGGCCC
*
50878736 AACAGCAAG-TGCAGGCCCAGTG
1 AACAGCAAGCTCCAGGCCCAGTG
*
50878758 AACAGCAGGCTCCAGGCCCAG
1 AACAGCAAGCTCCAGGCCCAG
50878779 CGCAGCAGCA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 8 0.44
23 10 0.56
ACGTcount: A:0.30, C:0.33, G:0.30, T:0.07
Consensus pattern (23 bp):
AACAGCAAGCTCCAGGCCCAGTG
Found at i:50878898 original size:20 final size:20
Alignment explanation
Indices: 50878871--50878917 Score: 58
Period size: 20 Copynumber: 2.2 Consensus size: 20
50878861 GCAGCAGGCA
*
50878871 AAAAAAAAGAGGAGAAAAAAAG
1 AAAAAAAAGA-GA-AAAGAAAG
*
50878893 AAAAAAAAGAGAAAAGAAGG
1 AAAAAAAAGAGAAAAGAAAG
50878913 AAAAA
1 AAAAA
50878918 TCCCGAGTCG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
20 11 0.48
21 2 0.09
22 10 0.43
ACGTcount: A:0.79, C:0.00, G:0.21, T:0.00
Consensus pattern (20 bp):
AAAAAAAAGAGAAAAGAAAG
Found at i:50879078 original size:31 final size:31
Alignment explanation
Indices: 50879038--50879098 Score: 88
Period size: 31 Copynumber: 1.9 Consensus size: 31
50879028 TAATAATCTT
*
50879038 GTTTTTTTAAGCATTTTTT-TATTTCGTATTAG
1 GTTTTTTAAAGC-TTTTTTATA-TTCGTATTAG
50879070 GTTTTTTAAAGCTTTTTTATATTCGTATT
1 GTTTTTTAAAGCTTTTTTATATTCGTATT
50879099 TAATTTTATT
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
31 14 0.52
32 13 0.48
ACGTcount: A:0.20, C:0.07, G:0.11, T:0.62
Consensus pattern (31 bp):
GTTTTTTAAAGCTTTTTTATATTCGTATTAG
Found at i:50880762 original size:21 final size:19
Alignment explanation
Indices: 50880736--50880789 Score: 63
Period size: 20 Copynumber: 2.7 Consensus size: 19
50880726 AGCTCAATTT
50880736 GGTATCAATACTTGGGGTTAA
1 GGTATCAATACTT--GGTTAA
* *
50880757 GGTATCAATACCTTGTTTAG
1 GGTATCAATA-CTTGGTTAA
50880777 GGTATCAATACTT
1 GGTATCAATACTT
50880790 TGATCCCTGT
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
19 3 0.10
20 14 0.47
21 10 0.33
22 3 0.10
ACGTcount: A:0.28, C:0.13, G:0.22, T:0.37
Consensus pattern (19 bp):
GGTATCAATACTTGGTTAA
Found at i:50880977 original size:17 final size:18
Alignment explanation
Indices: 50880944--50880980 Score: 58
Period size: 17 Copynumber: 2.1 Consensus size: 18
50880934 TCAAATTTAT
*
50880944 CAAGTTTTATTTCAAAAA
1 CAAGTTTTATCTCAAAAA
50880962 CAAGTTTTA-CTCAAAAA
1 CAAGTTTTATCTCAAAAA
50880979 CA
1 CA
50880981 TTATTTTTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 9 0.50
18 9 0.50
ACGTcount: A:0.46, C:0.16, G:0.05, T:0.32
Consensus pattern (18 bp):
CAAGTTTTATCTCAAAAA
Found at i:50881950 original size:25 final size:25
Alignment explanation
Indices: 50881894--50881969 Score: 64
Period size: 25 Copynumber: 2.9 Consensus size: 25
50881884 CCAAATATAA
* * *
50881894 TAAATATATTTTTTATTTTTAAAATTT
1 TAAATA-AATTTTTATTTTT-TATTTT
*
50881921 TAAAT-TATTTTTATTTTTTATTTT
1 TAAATAAATTTTTATTTTTTATTTT
*
50881945 TAAAATAAATTTTTAGTGTTTTATT
1 T-AAATAAATTTTTA-TTTTTTATT
50881970 AAAAAAATGA
Statistics
Matches: 40, Mismatches: 6, Indels: 6
0.77 0.12 0.12
Matches are distributed among these distances:
24 5 0.12
25 15 0.38
26 7 0.17
27 13 0.32
ACGTcount: A:0.33, C:0.00, G:0.03, T:0.64
Consensus pattern (25 bp):
TAAATAAATTTTTATTTTTTATTTT
Found at i:50886733 original size:26 final size:25
Alignment explanation
Indices: 50886687--50886738 Score: 61
Period size: 26 Copynumber: 2.0 Consensus size: 25
50886677 ATCATCAAGA
50886687 ATATAATAATAAAGCATTTAAATCAT
1 ATATAATAATAAAGCATTTAAA-CAT
* *
50886713 ATATAAT-ATAATGCGTATTAAACAT
1 ATATAATAATAAAGCAT-TTAAACAT
50886738 A
1 A
50886739 CGAACTTATC
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
25 11 0.48
26 12 0.52
ACGTcount: A:0.52, C:0.08, G:0.06, T:0.35
Consensus pattern (25 bp):
ATATAATAATAAAGCATTTAAACAT
Found at i:50888043 original size:29 final size:27
Alignment explanation
Indices: 50887978--50888043 Score: 69
Period size: 29 Copynumber: 2.4 Consensus size: 27
50887968 AAATTTATAA
* *
50887978 AAATTAATTTATTTTTATAATTTTTAT
1 AAATTAATTTATTTTAATAATATTTAT
** *
50888005 AGTTTTATTTAATTTCTAATAATATTTAT
1 AAATTAATTT-ATTT-TAATAATATTTAT
50888034 AAATTAATTT
1 AAATTAATTT
50888044 TTTAATTATT
Statistics
Matches: 29, Mismatches: 8, Indels: 2
0.74 0.21 0.05
Matches are distributed among these distances:
27 7 0.24
28 4 0.14
29 18 0.62
ACGTcount: A:0.38, C:0.02, G:0.02, T:0.59
Consensus pattern (27 bp):
AAATTAATTTATTTTAATAATATTTAT
Found at i:50888093 original size:23 final size:26
Alignment explanation
Indices: 50888048--50888094 Score: 64
Period size: 24 Copynumber: 1.9 Consensus size: 26
50888038 TAATTTTTTA
*
50888048 ATTATTTTATGAATTTTTAATAAATT
1 ATTATTTTATGAAATTTTAATAAATT
50888074 ATTA-TTTAT-AAATTTT-ATAAA
1 ATTATTTTATGAAATTTTAATAAA
50888095 ATTTCACGGT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
23 5 0.25
24 6 0.30
25 5 0.25
26 4 0.20
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.55
Consensus pattern (26 bp):
ATTATTTTATGAAATTTTAATAAATT
Found at i:50890127 original size:22 final size:22
Alignment explanation
Indices: 50890099--50890149 Score: 93
Period size: 22 Copynumber: 2.3 Consensus size: 22
50890089 CTCTCTAATC
50890099 CTCTCAATTTCCTTCCAAAATT
1 CTCTCAATTTCCTTCCAAAATT
50890121 CTCTCAATTTCCTTCCAAAATT
1 CTCTCAATTTCCTTCCAAAATT
*
50890143 ATCTCAA
1 CTCTCAA
50890150 ACCCATCTTT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
22 28 1.00
ACGTcount: A:0.29, C:0.31, G:0.00, T:0.39
Consensus pattern (22 bp):
CTCTCAATTTCCTTCCAAAATT
Found at i:50890185 original size:51 final size:51
Alignment explanation
Indices: 50890116--50890233 Score: 184
Period size: 51 Copynumber: 2.3 Consensus size: 51
50890106 TTTCCTTCCA
*
50890116 AAATT-CTCTCAATTTCCTTCCAAAATTATCTCAAACCCATCTTTAATTTC
1 AAATTCCTCTCAATTTCCTTCCAAAATTATCTCAAACCCATATTTAATTTC
* * *
50890166 AATTTCCTCTCAATTTCCTTCCAAAATTCTCTCAAATCCATATTTAATTTC
1 AAATTCCTCTCAATTTCCTTCCAAAATTATCTCAAACCCATATTTAATTTC
*
50890217 AAATTCCCCTCAATTTC
1 AAATTCCTCTCAATTTC
50890234 ATTTTTTAAA
Statistics
Matches: 61, Mismatches: 6, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
50 4 0.07
51 57 0.93
ACGTcount: A:0.31, C:0.29, G:0.00, T:0.41
Consensus pattern (51 bp):
AAATTCCTCTCAATTTCCTTCCAAAATTATCTCAAACCCATATTTAATTTC
Found at i:50890273 original size:31 final size:32
Alignment explanation
Indices: 50890235--50890300 Score: 109
Period size: 32 Copynumber: 2.1 Consensus size: 32
50890225 CTCAATTTCA
50890235 TTTTTT-AAAATAATTTTA-ATTTTTTTTATAT
1 TTTTTTAAAAATAATTTTATA-TTTTTTTATAT
50890266 TTTTTTAAAAATAATTTTATATTTTTTTATAT
1 TTTTTTAAAAATAATTTTATATTTTTTTATAT
50890298 TTT
1 TTT
50890301 CATCAATGGC
Statistics
Matches: 33, Mismatches: 0, Indels: 3
0.92 0.00 0.08
Matches are distributed among these distances:
31 6 0.18
32 26 0.79
33 1 0.03
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (32 bp):
TTTTTTAAAAATAATTTTATATTTTTTTATAT
Found at i:50896657 original size:23 final size:22
Alignment explanation
Indices: 50896607--50896657 Score: 59
Period size: 23 Copynumber: 2.3 Consensus size: 22
50896597 TTCTTTATTG
*
50896607 TTTTT-TTTACTTTATGTTCAT
1 TTTTTATTTACTTTATGTCCAT
*
50896628 TTATTTATTTATTTATATGTCCAT
1 TT-TTTATTTACTT-TATGTCCAT
50896652 TTTTTA
1 TTTTTA
50896658 ATGTTTTAGT
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
21 2 0.08
22 3 0.12
23 10 0.40
24 10 0.40
ACGTcount: A:0.20, C:0.08, G:0.04, T:0.69
Consensus pattern (22 bp):
TTTTTATTTACTTTATGTCCAT
Found at i:50897011 original size:107 final size:106
Alignment explanation
Indices: 50896817--50897125 Score: 467
Period size: 107 Copynumber: 3.0 Consensus size: 106
50896807 AAGGAAAGTT
*
50896817 TTTCTAAA-TAAGGCAATATTTTGCGTTTGGAAATTCGAGAAAACGTGCCATAATGTGCTGGGTT
1 TTTC-AAAGTAAGGCAATATTTTGCGTTTGGAAATTCGAGAAAACGTGCCCTAATGTGCTGGGTT
*
50896881 TCGATTTTTTCGTTCGACCAAATAGCTAAATATCCTTTTAAG
65 TCGATTTTTTCGTTTGACCAAATAGCTAAATATCCTTTTAAG
50896923 ATTTCAAAGTAAGGCAATATTTTGCGTTTGGAAATTCGAGAAAACGTGCCCTAATGTGCTGGGTT
1 -TTTCAAAGTAAGGCAATATTTTGCGTTTGGAAATTCGAGAAAACGTGCCCTAATGTGCTGGGTT
*
50896988 TCGATTTTTTCGTTTGACCAAATAGCCAAATATCCTTTTAAG
65 TCGATTTTTTCGTTTGACCAAATAGCTAAATATCCTTTTAAG
*
50897030 --T--AAG--A--CAATATTTTGCGTTTGGAAATTCGAGGAAACGTGCCCTAATGTGCTGGGTTT
1 TTTCAAAGTAAGGCAATATTTTGCGTTTGGAAATTCGAGAAAACGTGCCCTAATGTGCTGGGTTT
* * *
50897087 CGA-TTTCTCGTTTGACTAAATAGCTAAATATCCTCTTAA
66 CGATTTTTTCGTTTGACCAAATAGCTAAATATCCTTTTAA
50897126 ATCTCAATCC
Statistics
Matches: 193, Mismatches: 8, Indels: 12
0.91 0.04 0.06
Matches are distributed among these distances:
97 32 0.17
98 54 0.28
100 1 0.01
102 3 0.02
104 1 0.01
106 3 0.02
107 99 0.51
ACGTcount: A:0.29, C:0.16, G:0.19, T:0.36
Consensus pattern (106 bp):
TTTCAAAGTAAGGCAATATTTTGCGTTTGGAAATTCGAGAAAACGTGCCCTAATGTGCTGGGTTT
CGATTTTTTCGTTTGACCAAATAGCTAAATATCCTTTTAAG
Found at i:50897057 original size:98 final size:97
Alignment explanation
Indices: 50896929--50897125 Score: 331
Period size: 98 Copynumber: 2.0 Consensus size: 97
50896919 TAAGATTTCA
*
50896929 AAGTAAGGCAATATTTTGCGTTTGGAAATTCGAGAAAACGTGCCCTAATGTGCTGGGTTTCGATT
1 AAGTAAGACAATATTTTGCGTTTGGAAATTCGAGAAAACGTGCCCTAATGTGCTGGGTTTCGA-T
* *
50896994 TTTTCGTTTGACCAAATAGCCAAATATCCTTTT
65 TTCTCGTTTGACCAAATAGCCAAATATCCTCTT
*
50897027 AAGTAAGACAATATTTTGCGTTTGGAAATTCGAGGAAACGTGCCCTAATGTGCTGGGTTTCGATT
1 AAGTAAGACAATATTTTGCGTTTGGAAATTCGAGAAAACGTGCCCTAATGTGCTGGGTTTCGATT
* *
50897092 TCTCGTTTGACTAAATAGCTAAATATCCTCTT
66 TCTCGTTTGACCAAATAGCCAAATATCCTCTT
50897124 AA
1 AA
50897126 ATCTCAATCC
Statistics
Matches: 93, Mismatches: 6, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
97 32 0.34
98 61 0.66
ACGTcount: A:0.28, C:0.16, G:0.20, T:0.35
Consensus pattern (97 bp):
AAGTAAGACAATATTTTGCGTTTGGAAATTCGAGAAAACGTGCCCTAATGTGCTGGGTTTCGATT
TCTCGTTTGACCAAATAGCCAAATATCCTCTT
Found at i:50906296 original size:26 final size:25
Alignment explanation
Indices: 50906266--50906321 Score: 85
Period size: 26 Copynumber: 2.2 Consensus size: 25
50906256 TTTACTTGAT
*
50906266 TTTATTTTTTCAAAACTAAACTAAA
1 TTTATTTTTACAAAACTAAACTAAA
*
50906291 TATTATTTTTACAAAATTAAACTAAA
1 T-TTATTTTTACAAAACTAAACTAAA
50906317 TTTAT
1 TTTAT
50906322 ATTATTATTT
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
25 5 0.18
26 23 0.82
ACGTcount: A:0.45, C:0.09, G:0.00, T:0.46
Consensus pattern (25 bp):
TTTATTTTTACAAAACTAAACTAAA
Found at i:50906859 original size:19 final size:18
Alignment explanation
Indices: 50906825--50906872 Score: 60
Period size: 19 Copynumber: 2.5 Consensus size: 18
50906815 TTAAATTAAA
*
50906825 AAAATTATAATGAAATATAT
1 AAAATTAT-TTGAAATAT-T
50906845 AAAATTATTTGAAATATT
1 AAAATTATTTGAAATATT
50906863 AAAATATATT
1 AAAAT-TATT
50906873 AAAAATTTTA
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
18 6 0.23
19 12 0.46
20 8 0.31
ACGTcount: A:0.56, C:0.00, G:0.04, T:0.40
Consensus pattern (18 bp):
AAAATTATTTGAAATATT
Found at i:50906878 original size:19 final size:19
Alignment explanation
Indices: 50906837--50906878 Score: 50
Period size: 19 Copynumber: 2.2 Consensus size: 19
50906827 AATTATAATG
**
50906837 AAATATATAAAATTATTTG
1 AAATATATAAAATTATTAA
50906856 AAATAT-TAAAATATATTAA
1 AAATATATAAAAT-TATTAA
50906875 AAAT
1 AAAT
50906879 TTTATTACAC
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
18 6 0.30
19 14 0.70
ACGTcount: A:0.60, C:0.00, G:0.02, T:0.38
Consensus pattern (19 bp):
AAATATATAAAATTATTAA
Found at i:50913920 original size:21 final size:21
Alignment explanation
Indices: 50913882--50913943 Score: 63
Period size: 21 Copynumber: 3.0 Consensus size: 21
50913872 GAGTACTTGA
*
50913882 AAAACAAAA-ATAATATAAAAT
1 AAAACAAAATA-AAAATAAAAT
*
50913903 AAAACAAAATAAAAATAAATT
1 AAAACAAAATAAAAATAAAAT
* **
50913924 CAAATGAAATAAAAATAAAA
1 AAAACAAAATAAAAATAAAA
50913944 ATACCCTATC
Statistics
Matches: 34, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
21 33 0.97
22 1 0.03
ACGTcount: A:0.76, C:0.05, G:0.02, T:0.18
Consensus pattern (21 bp):
AAAACAAAATAAAAATAAAAT
Found at i:50919155 original size:23 final size:25
Alignment explanation
Indices: 50919118--50919163 Score: 69
Period size: 24 Copynumber: 1.9 Consensus size: 25
50919108 GTATTTTATA
50919118 ATTTTTTCCCAATTTTT-ATAAATT
1 ATTTTTTCCCAATTTTTAATAAATT
*
50919142 ATTTTTTCTC-ATTTTTAATAAA
1 ATTTTTTCCCAATTTTTAATAAA
50919164 ATTTAAATAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 6 0.30
24 14 0.70
ACGTcount: A:0.30, C:0.11, G:0.00, T:0.59
Consensus pattern (25 bp):
ATTTTTTCCCAATTTTTAATAAATT
Found at i:50919216 original size:29 final size:30
Alignment explanation
Indices: 50919152--50919219 Score: 86
Period size: 29 Copynumber: 2.3 Consensus size: 30
50919142 ATTTTTTCTC
*
50919152 ATTTTTAATAAAATTTAAATATTTTTATATT
1 ATTTTT-ATTAAATTTAAATATTTTTATATT
* *
50919183 -CTTTTATTAAATTTTAATATTTTTAT-TT
1 ATTTTTATTAAATTTAAATATTTTTATATT
50919211 ATTTTTATT
1 ATTTTTATT
50919220 TTTATTTCCA
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
28 2 0.06
29 26 0.81
30 4 0.12
ACGTcount: A:0.34, C:0.01, G:0.00, T:0.65
Consensus pattern (30 bp):
ATTTTTATTAAATTTAAATATTTTTATATT
Found at i:50922181 original size:3 final size:3
Alignment explanation
Indices: 50922173--50922198 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
50922163 CTTCCAACAT
50922173 CCA CCA CCA CCA CCA CCA CCA CCA CC
1 CCA CCA CCA CCA CCA CCA CCA CCA CC
50922199 CCCAAACCCC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.31, C:0.69, G:0.00, T:0.00
Consensus pattern (3 bp):
CCA
Found at i:50926995 original size:14 final size:14
Alignment explanation
Indices: 50926978--50927023 Score: 83
Period size: 14 Copynumber: 3.3 Consensus size: 14
50926968 TAAAAAAATG
50926978 TTATTAAATTATTA
1 TTATTAAATTATTA
*
50926992 TTATTAAATTAGTA
1 TTATTAAATTATTA
50927006 TTATTAAATTATTA
1 TTATTAAATTATTA
50927020 TTAT
1 TTAT
50927024 ATTTTAAATA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 30 1.00
ACGTcount: A:0.41, C:0.00, G:0.02, T:0.57
Consensus pattern (14 bp):
TTATTAAATTATTA
Found at i:50927155 original size:3 final size:3
Alignment explanation
Indices: 50927149--50927192 Score: 88
Period size: 3 Copynumber: 14.7 Consensus size: 3
50927139 TATTAAAATA
50927149 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
50927193 ACTAGGAATA
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 41 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:50932030 original size:15 final size:15
Alignment explanation
Indices: 50932010--50932039 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
50932000 ATTCGTAAGT
50932010 AAAAAAAATCGGGGC
1 AAAAAAAATCGGGGC
*
50932025 AAAAAAAATTGGGGC
1 AAAAAAAATCGGGGC
50932040 CCTTTTTATA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.53, C:0.10, G:0.27, T:0.10
Consensus pattern (15 bp):
AAAAAAAATCGGGGC
Found at i:50932291 original size:18 final size:19
Alignment explanation
Indices: 50932253--50932292 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
50932243 TTTTGGGCTA
50932253 GGGTTTGTAATGGGTTATT
1 GGGTTTGTAATGGGTTATT
50932272 GGGTTTG-AATTGGG-TATT
1 GGGTTTGTAA-TGGGTTATT
50932290 GGG
1 GGG
50932293 CTAATGGATT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
18 9 0.45
19 11 0.55
ACGTcount: A:0.15, C:0.00, G:0.42, T:0.42
Consensus pattern (19 bp):
GGGTTTGTAATGGGTTATT
Found at i:50933103 original size:22 final size:23
Alignment explanation
Indices: 50933076--50933120 Score: 74
Period size: 23 Copynumber: 2.0 Consensus size: 23
50933066 AGGTATCTAC
50933076 AAATCAAATC-TCTAAGATTACA
1 AAATCAAATCTTCTAAGATTACA
*
50933098 AAATCATATCTTCTAAGATTACA
1 AAATCAAATCTTCTAAGATTACA
50933121 TATCATATCT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
22 9 0.43
23 12 0.57
ACGTcount: A:0.47, C:0.18, G:0.04, T:0.31
Consensus pattern (23 bp):
AAATCAAATCTTCTAAGATTACA
Found at i:50933125 original size:22 final size:22
Alignment explanation
Indices: 50933073--50933130 Score: 82
Period size: 22 Copynumber: 2.6 Consensus size: 22
50933063 AAAAGGTATC
*
50933073 TACAAATCAAATC-TCTAAGAT
1 TACAAATCATATCTTCTAAGAT
50933094 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATCTTCTAAGAT
*
50933117 TACATATCATATCT
1 TACAAATCATATCT
50933131 AAGATTGCAT
Statistics
Matches: 33, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
21 3 0.09
22 19 0.58
23 11 0.33
ACGTcount: A:0.43, C:0.19, G:0.03, T:0.34
Consensus pattern (22 bp):
TACAAATCATATCTTCTAAGAT
Found at i:50933133 original size:19 final size:20
Alignment explanation
Indices: 50933086--50933143 Score: 64
Period size: 19 Copynumber: 2.8 Consensus size: 20
50933076 AAATCAAATC
*
50933086 TCTAAGATTACAAAATCATATCT
1 TCTAAGATTAC-ATATCATA--T
50933109 TCTAAGATTACATATCATA-
1 TCTAAGATTACATATCATAT
*
50933128 TCTAAGATTGCATATC
1 TCTAAGATTACATATC
50933144 CTCGAAGGTT
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
19 15 0.45
22 7 0.21
23 11 0.33
ACGTcount: A:0.40, C:0.17, G:0.07, T:0.36
Consensus pattern (20 bp):
TCTAAGATTACATATCATAT
Found at i:50939539 original size:23 final size:24
Alignment explanation
Indices: 50939493--50939539 Score: 62
Period size: 23 Copynumber: 2.0 Consensus size: 24
50939483 AAGTTTAGGT
*
50939493 TTCAAAATGAGAACATAGGTATAA
1 TTCAAAATGAGAACATAGGAATAA
50939517 TTCAAAA-GAGAA-ATCAGGAATAA
1 TTCAAAATGAGAACAT-AGGAATAA
50939540 GGGTAATCTA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
22 2 0.10
23 12 0.57
24 7 0.33
ACGTcount: A:0.53, C:0.09, G:0.17, T:0.21
Consensus pattern (24 bp):
TTCAAAATGAGAACATAGGAATAA
Found at i:50945923 original size:3 final size:3
Alignment explanation
Indices: 50945917--50945941 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
50945907 TGAAGAAGTA
50945917 GTG GTG GTG GTG GTG GTG GTG GTG G
1 GTG GTG GTG GTG GTG GTG GTG GTG G
50945942 CGGCCGATCA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.00, C:0.00, G:0.68, T:0.32
Consensus pattern (3 bp):
GTG
Found at i:50946095 original size:20 final size:21
Alignment explanation
Indices: 50946070--50946115 Score: 67
Period size: 22 Copynumber: 2.2 Consensus size: 21
50946060 CATGGGTGTA
50946070 TGGGCTTTT-TAACCTAATAT
1 TGGGCTTTTATAACCTAATAT
*
50946090 TGGGCTTTTAATACCCTAATAT
1 TGGGCTTTT-ATAACCTAATAT
50946112 TGGG
1 TGGG
50946116 AATCGTTAGT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 9 0.39
22 14 0.61
ACGTcount: A:0.24, C:0.15, G:0.20, T:0.41
Consensus pattern (21 bp):
TGGGCTTTTATAACCTAATAT
Found at i:50946674 original size:197 final size:192
Alignment explanation
Indices: 50946304--50946676 Score: 541
Period size: 197 Copynumber: 1.9 Consensus size: 192
50946294 AAATCTGAGC
* *
50946304 AAAATCCTCCCATGTTGCTTCTTTTGGTCTCAAATTTGCCCACTGGATCAATAGTTGCATGATGG
1 AAAATCCCCCCATGTTGCTTCTTTTGGTCCCAAATTTGCCCACTGGATCAATAGTTGCATGATGG
* * *
50946369 TTCAATTGTGACATTTCACGAGTATCGGGTACCAAGGCAAGGTAAATTTTGGGTTGTCCGTCAGT
66 CTCAACTGTGACATTTCACGAGTATCGGGTACCAAGGCAAGGTAAATCTTGGGTTGTCCGTCAGT
* *
50946434 TTTCATTTCCAGTAAGTCTCTGCAAGTTACTCCCTTCTCTCCAATTGAGCCTATAGAACCGA
131 TCTCATTTCCAGTAAGTCTCTGCAAGTTACTCCCTTATCTCCAATTGAGCCTATAGAACCGA
* *
50946496 AAAATCCCCCCATGTTGCTTCTTTTGGTCCCAAATTTGCCCACTGGATCAGTAGCTT-CGTGATG
1 AAAATCCCCCCATGTTGCTTCTTTTGGTCCCAAATTTGCCCACTGGATCAATAG-TTGCATGATG
* *
50946560 GCTCAACTGTGACATTTCACGATTTGAGTATCTGGTAGCAAGGCAAGGTAAATCTTGGGTTGTCC
65 GCTCAACTGTGACATTTCAC-----GAGTATCGGGTACCAAGGCAAGGTAAATCTTGGGTTGTCC
* * * * *
50946625 GTCGGTTCTCCTTTGCAGTAAGTCTGTGCTAGTTACTCCCTTATCTCCAATT
125 GTCAGTTCTCATTTCCAGTAAGTCTCTGCAAGTTACTCCCTTATCTCCAATT
50946677 TTCTCTTTCC
Statistics
Matches: 159, Mismatches: 16, Indels: 7
0.87 0.09 0.04
Matches are distributed among these distances:
192 75 0.47
193 2 0.01
197 82 0.52
ACGTcount: A:0.22, C:0.24, G:0.20, T:0.34
Consensus pattern (192 bp):
AAAATCCCCCCATGTTGCTTCTTTTGGTCCCAAATTTGCCCACTGGATCAATAGTTGCATGATGG
CTCAACTGTGACATTTCACGAGTATCGGGTACCAAGGCAAGGTAAATCTTGGGTTGTCCGTCAGT
TCTCATTTCCAGTAAGTCTCTGCAAGTTACTCCCTTATCTCCAATTGAGCCTATAGAACCGA
Found at i:50947508 original size:24 final size:24
Alignment explanation
Indices: 50947467--50947553 Score: 75
Period size: 24 Copynumber: 3.9 Consensus size: 24
50947457 TAAAAGTCTC
50947467 TTATATATTTTAAAATTTTATATA
1 TTATATATTTTAAAATTTTATATA
*
50947491 TTAT-TATTTTCAACATTTT-T-TA
1 TTATATATTTT-AAAATTTTATATA
50947513 -TATAT-TTTT-AAA-TTTAT-TA
1 TTATATATTTTAAAATTTTATATA
50947532 TTATAT-TTTTGAAAATATTTAT
1 TTATATATTTT-AAAAT-TTTAT
50947554 GTGGTTTTAT
Statistics
Matches: 53, Mismatches: 2, Indels: 16
0.75 0.03 0.23
Matches are distributed among these distances:
18 3 0.06
19 5 0.09
20 9 0.17
21 7 0.13
22 6 0.11
23 7 0.13
24 16 0.30
ACGTcount: A:0.36, C:0.02, G:0.01, T:0.61
Consensus pattern (24 bp):
TTATATATTTTAAAATTTTATATA
Found at i:50947541 original size:20 final size:20
Alignment explanation
Indices: 50947470--50947541 Score: 74
Period size: 20 Copynumber: 3.5 Consensus size: 20
50947460 AAGTCTCTTA
*
50947470 TATATTTTAAAATTTTATATAT
1 TATATTTTTAAA-TTTAT-TAT
* *
50947492 TATTATTTTCAACATTTTTTA-
1 TA-TATTTTTAA-ATTTATTAT
50947513 TATATTTTTAAATTTATTAT
1 TATATTTTTAAATTTATTAT
50947533 TATATTTTT
1 TATATTTTT
50947542 GAAAATATTT
Statistics
Matches: 43, Mismatches: 4, Indels: 8
0.78 0.07 0.15
Matches are distributed among these distances:
19 7 0.16
20 17 0.40
21 2 0.05
22 4 0.09
23 12 0.28
24 1 0.02
ACGTcount: A:0.33, C:0.03, G:0.00, T:0.64
Consensus pattern (20 bp):
TATATTTTTAAATTTATTAT
Found at i:50947550 original size:20 final size:20
Alignment explanation
Indices: 50947513--50947550 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
50947503 ACATTTTTTA
*
50947513 TATATTTTTAAATTTATTAT
1 TATATTTTTAAATATATTAT
50947533 TATATTTTTGAAA-ATATT
1 TATATTTTT-AAATATATT
50947551 TATGTGGTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
20 13 0.81
21 3 0.19
ACGTcount: A:0.37, C:0.00, G:0.03, T:0.61
Consensus pattern (20 bp):
TATATTTTTAAATATATTAT
Found at i:50954573 original size:31 final size:31
Alignment explanation
Indices: 50954538--50954603 Score: 123
Period size: 31 Copynumber: 2.1 Consensus size: 31
50954528 AATCATTTAT
*
50954538 TACAATAAATCTACACACTGAAAAGATAAAA
1 TACAATAAATCTACAAACTGAAAAGATAAAA
50954569 TACAATAAATCTACAAACTGAAAAGATAAAA
1 TACAATAAATCTACAAACTGAAAAGATAAAA
50954600 TACA
1 TACA
50954604 TGTGTAGTGA
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 34 1.00
ACGTcount: A:0.59, C:0.15, G:0.06, T:0.20
Consensus pattern (31 bp):
TACAATAAATCTACAAACTGAAAAGATAAAA
Found at i:50956830 original size:18 final size:18
Alignment explanation
Indices: 50956807--50956843 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
50956797 TGCATCTAAT
*
50956807 AAACACTTTGGCGACAAA
1 AAACACTTTGGAGACAAA
50956825 AAACACTTTGGAGACAAA
1 AAACACTTTGGAGACAAA
50956843 A
1 A
50956844 GCATTCTTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.49, C:0.19, G:0.16, T:0.16
Consensus pattern (18 bp):
AAACACTTTGGAGACAAA
Found at i:50958885 original size:9 final size:10
Alignment explanation
Indices: 50958864--50958916 Score: 51
Period size: 10 Copynumber: 5.6 Consensus size: 10
50958854 AATCAAAGTT
50958864 ATAAATATTA
1 ATAAATATTA
50958874 ATAAAT-TTA
1 ATAAATATTA
50958883 ATAAA-A-TA
1 ATAAATATTA
*
50958891 TTAAATATTA
1 ATAAATATTA
*
50958901 AAAAATTATTA
1 ATAAA-TATTA
50958912 A-AAAT
1 ATAAAT
50958917 GAGAAAAAAT
Statistics
Matches: 36, Mismatches: 3, Indels: 9
0.75 0.06 0.19
Matches are distributed among these distances:
8 6 0.17
9 10 0.28
10 14 0.39
11 6 0.17
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (10 bp):
ATAAATATTA
Found at i:50958910 original size:18 final size:18
Alignment explanation
Indices: 50958864--50958913 Score: 59
Period size: 18 Copynumber: 2.8 Consensus size: 18
50958854 AATCAAAGTT
*
50958864 ATAAATATTAATAAATTTA
1 ATAAA-ATTATTAAATTTA
50958883 ATAAAA-TATTAAATATTA
1 ATAAAATTATTAAAT-TTA
50958901 A-AAAATTATTAAA
1 ATAAAATTATTAAA
50958914 AATGAGAAAA
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
17 11 0.39
18 12 0.43
19 5 0.18
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (18 bp):
ATAAAATTATTAAATTTA
Found at i:50959047 original size:20 final size:19
Alignment explanation
Indices: 50958983--50959048 Score: 62
Period size: 19 Copynumber: 3.4 Consensus size: 19
50958973 ATATAAAATT
* *
50958983 TTATAAAGTTGTAAGAAAA
1 TTATAAAATTGTAAAAAAA
* *
50959002 TTATACAAAATGTAAAGAAA
1 TTATA-AAATTGTAAAAAAA
*
50959022 -TATAAATTTCGTAAAAAAA
1 TTATAAAATT-GTAAAAAAA
50959041 TTATAAAA
1 TTATAAAA
50959049 ATTATTGTAC
Statistics
Matches: 36, Mismatches: 8, Indels: 5
0.73 0.16 0.10
Matches are distributed among these distances:
18 3 0.08
19 17 0.47
20 16 0.44
ACGTcount: A:0.58, C:0.03, G:0.09, T:0.30
Consensus pattern (19 bp):
TTATAAAATTGTAAAAAAA
Found at i:50959264 original size:29 final size:29
Alignment explanation
Indices: 50959232--50959319 Score: 158
Period size: 29 Copynumber: 3.0 Consensus size: 29
50959222 TTTTTAATGC
* *
50959232 ATTTTATATTTTTTTATGATTTTTATAAA
1 ATTTTATATTCTTTTACGATTTTTATAAA
50959261 ATTTTATATTCTTTTACGATTTTTATAAA
1 ATTTTATATTCTTTTACGATTTTTATAAA
50959290 ATTTTATATTCTTTTACGATTTTTATAAA
1 ATTTTATATTCTTTTACGATTTTTATAAA
50959319 A
1 A
50959320 AAATTCTATT
Statistics
Matches: 57, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 57 1.00
ACGTcount: A:0.32, C:0.05, G:0.03, T:0.60
Consensus pattern (29 bp):
ATTTTATATTCTTTTACGATTTTTATAAA
Found at i:50959379 original size:16 final size:16
Alignment explanation
Indices: 50959334--50959392 Score: 64
Period size: 16 Copynumber: 3.5 Consensus size: 16
50959324 TCTATTTTAA
50959334 TAAAATTTTAATTATTTAT
1 TAAAA-TTTAA-TATTT-T
*
50959353 TAAAATCTAATATTTT
1 TAAAATTTAATATTTT
*
50959369 TTAAATTTAATATTTT
1 TAAAATTTAATATTTT
*
50959385 TATAATTT
1 TAAAATTT
50959393 TTTTCTAATT
Statistics
Matches: 35, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
16 21 0.60
17 5 0.14
18 4 0.11
19 5 0.14
ACGTcount: A:0.41, C:0.02, G:0.00, T:0.58
Consensus pattern (16 bp):
TAAAATTTAATATTTT
Found at i:50961819 original size:2 final size:2
Alignment explanation
Indices: 50961812--50961837 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
50961802 TTCAATACTA
50961812 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
50961838 TAATTCAATC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:50962735 original size:5 final size:5
Alignment explanation
Indices: 50962717--50962773 Score: 59
Period size: 5 Copynumber: 11.8 Consensus size: 5
50962707 GTTTATTTAA
*
50962717 AATAT AAT-T AATAT AATAT AAT-T AATAT AATTTAC AATAT AATAT AATA-
1 AATAT AATAT AATAT AATAT AATAT AATAT AA--TAT AATAT AATAT AATAT
50962766 AA-AT AATA
1 AATAT AATA
50962774 ACATACTTTA
Statistics
Matches: 44, Mismatches: 2, Indels: 12
0.76 0.03 0.21
Matches are distributed among these distances:
3 1 0.02
4 12 0.27
5 27 0.61
7 4 0.09
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.39
Consensus pattern (5 bp):
AATAT
Found at i:50962736 original size:14 final size:13
Alignment explanation
Indices: 50962717--50962773 Score: 62
Period size: 14 Copynumber: 4.3 Consensus size: 13
50962707 GTTTATTTAA
50962717 AATATAATTAATAT
1 AATATAA-TAATAT
50962731 AATATAATTAATAT
1 AATATAA-TAATAT
* *
50962745 AAT-TTACAATAT
1 AATATAATAATAT
*
50962757 AATATAATAAAAT
1 AATATAATAATAT
50962770 AATA
1 AATA
50962774 ACATACTTTA
Statistics
Matches: 37, Mismatches: 5, Indels: 3
0.82 0.11 0.07
Matches are distributed among these distances:
12 8 0.22
13 12 0.32
14 17 0.46
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.39
Consensus pattern (13 bp):
AATATAATAATAT
Found at i:50969544 original size:59 final size:59
Alignment explanation
Indices: 50969452--50969565 Score: 228
Period size: 59 Copynumber: 1.9 Consensus size: 59
50969442 TAAAATATAA
50969452 TATCTTATAAATAAAAAACAAATATTTAATTAGGTACTTCAATATTAAGTAACCTTTAC
1 TATCTTATAAATAAAAAACAAATATTTAATTAGGTACTTCAATATTAAGTAACCTTTAC
50969511 TATCTTATAAATAAAAAACAAATATTTAATTAGGTACTTCAATATTAAGTAACCT
1 TATCTTATAAATAAAAAACAAATATTTAATTAGGTACTTCAATATTAAGTAACCT
50969566 CAAATGGGTA
Statistics
Matches: 55, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
59 55 1.00
ACGTcount: A:0.46, C:0.11, G:0.05, T:0.37
Consensus pattern (59 bp):
TATCTTATAAATAAAAAACAAATATTTAATTAGGTACTTCAATATTAAGTAACCTTTAC
Found at i:50969889 original size:152 final size:151
Alignment explanation
Indices: 50969703--50970107 Score: 595
Period size: 152 Copynumber: 2.7 Consensus size: 151
50969693 AGGCAGCACC
* *
50969703 AAATGAATACATTTCAAACATAATGTACTAAAATAATATAAAATAATAAAATTAGAAAATAGTAT
1 AAATGAATACATTTCAAACATAATGTACTAAAATAATGTAAAATAATAAAATTAGAAAATAATAT
* * * * *
50969768 ATTTTTTAAAGTAATAAAATTCGGGGAAAAAATACGAACAAAAGGCCGAAATAAGGTTTTTTTTT
66 ATTTTTTAAAGTAATAAAATTC-AGAAAAAAATACGAACAAAAGGCCAAAATAAGG-GTTTTCTT
* *
50969833 AAAATTTATTTAAAAAA-ATAGT
129 AAAATTTATTTAAAAAACACACT
*
50969855 AAATTAATACATTTCAAACATAATGTACTAAAATAATGTAAAATAAT-AAA-TACGAAAATAATA
1 AAATGAATACATTTCAAACATAATGTACTAAAATAATGTAAAATAATAAAATTA-GAAAATAATA
* *
50969918 TATTTTTATTGAAAGTAATAAAA-TCAGAAAAAAATACGAACAAATGGCCAAAATTAGGGTTTTC
65 TA-TTTT-TT-AAAGTAATAAAATTCAGAAAAAAATACGAACAAAAGGCCAAAATAAGGGTTTTC
*
50969982 TTCAAATTTATTTAAAAAACACACT
127 TTAAAATTTATTTAAAAAACACACT
*
50970007 AAATGAATACATTTCAAATATAATGTACTAAAATAATGTAAAATAATAAAATTAGAAAATAATAT
1 AAATGAATACATTTCAAACATAATGTACTAAAATAATGTAAAATAATAAAATTAGAAAATAATAT
50970072 ATTTTTTAAAGTAATAAAATTCA-AAAAAAATACGAA
66 ATTTTTTAAAGTAATAAAATTCAGAAAAAAATACGAA
50970108 TAAAGAGCTG
Statistics
Matches: 230, Mismatches: 15, Indels: 18
0.87 0.06 0.07
Matches are distributed among these distances:
150 27 0.12
151 41 0.18
152 129 0.56
153 19 0.08
154 14 0.06
ACGTcount: A:0.54, C:0.07, G:0.08, T:0.31
Consensus pattern (151 bp):
AAATGAATACATTTCAAACATAATGTACTAAAATAATGTAAAATAATAAAATTAGAAAATAATAT
ATTTTTTAAAGTAATAAAATTCAGAAAAAAATACGAACAAAAGGCCAAAATAAGGGTTTTCTTAA
AATTTATTTAAAAAACACACT
Found at i:50971695 original size:147 final size:147
Alignment explanation
Indices: 50971439--50971735 Score: 531
Period size: 147 Copynumber: 2.0 Consensus size: 147
50971429 TCAGAGCAAA
50971439 TACTTTCTTTTATTCATCATGTTGATTATGTATGTGCTATGTGATGTGTGATGTACTGGCTACTT
1 TACTTTCTTTTATTCATCATGTTGATTATGTATGTGCTATGTGATGTGTGATGTACTGGCTACTT
*
50971504 CACTGACATTTTCTTTAATATGTTTTACATAATGTTTTCAGTTTCTAAGTAACTGTCCATTTTTC
66 CACTGACATTTTCTTTAATATGCTTTACATAATGTTTTCAGTTTCTAAGTAACTGTCCATTTTTC
50971569 TTCATTCTTAGATATGG
131 TTCATTCTTAGATATGG
*
50971586 TACTTTCTTTTATTCATCATGTTGATTATTTATGTGCTATGTGATGTGTGATGTACTGGCTACTT
1 TACTTTCTTTTATTCATCATGTTGATTATGTATGTGCTATGTGATGTGTGATGTACTGGCTACTT
* * *
50971651 CACTGACATTTTCTTTAATTTGCTTTACATAATGTTTTCTGTTTCTAAGTAACTGTCCGTTTTTC
66 CACTGACATTTTCTTTAATATGCTTTACATAATGTTTTCAGTTTCTAAGTAACTGTCCATTTTTC
* *
50971716 TTCTTTCTTGGATATGG
131 TTCATTCTTAGATATGG
50971733 TAC
1 TAC
50971736 ATGCGGTTAG
Statistics
Matches: 143, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
147 143 1.00
ACGTcount: A:0.20, C:0.15, G:0.15, T:0.50
Consensus pattern (147 bp):
TACTTTCTTTTATTCATCATGTTGATTATGTATGTGCTATGTGATGTGTGATGTACTGGCTACTT
CACTGACATTTTCTTTAATATGCTTTACATAATGTTTTCAGTTTCTAAGTAACTGTCCATTTTTC
TTCATTCTTAGATATGG
Found at i:50973800 original size:13 final size:13
Alignment explanation
Indices: 50973782--50973809 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
50973772 AGTCAGCTTC
50973782 ATTAATATATTTA
1 ATTAATATATTTA
50973795 ATTAATATATTTA
1 ATTAATATATTTA
50973808 AT
1 AT
50973810 ACAACAAAGA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (13 bp):
ATTAATATATTTA
Done.