Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr09 ID=Chr09-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 70713020
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 1142373 characters in sequence are not A, C, G, or T
File 158 of 226
Found at i:50984398 original size:50 final size:51
Alignment explanation
Indices: 50984318--50984415 Score: 153
Period size: 50 Copynumber: 1.9 Consensus size: 51
50984308 TCAGGACATT
* * *
50984318 AGATAGAGAGGTCCCATGTACGACCATGTCTGGGACATGGCGTTGGCACCG
1 AGATAGAGAGGTCCCACGTAAGACCATGTCTGGGACATGGCCTTGGCACCG
*
50984369 AGAT-GAGAGGTCCCCCGTAAGACCATGTCTGGGACATGGCCTTGGCA
1 AGATAGAGAGGTCCCACGTAAGACCATGTCTGGGACATGGCCTTGGCA
50984416 TGTTATTATC
Statistics
Matches: 43, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
50 39 0.91
51 4 0.09
ACGTcount: A:0.23, C:0.24, G:0.33, T:0.19
Consensus pattern (51 bp):
AGATAGAGAGGTCCCACGTAAGACCATGTCTGGGACATGGCCTTGGCACCG
Found at i:50991187 original size:13 final size:13
Alignment explanation
Indices: 50991166--50991195 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
50991156 GCTTGGATCA
50991166 TCATCAAATAAAT
1 TCATCAAATAAAT
*
50991179 TCATGAAATAAAT
1 TCATCAAATAAAT
50991192 TCAT
1 TCAT
50991196 AGTTGCTGGA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.50, C:0.13, G:0.03, T:0.33
Consensus pattern (13 bp):
TCATCAAATAAAT
Found at i:50996352 original size:3 final size:3
Alignment explanation
Indices: 50996344--50996369 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
50996334 ATCATTAAGA
50996344 AAG AAG AAG AAG AAG AAG AAG AAG AA
1 AAG AAG AAG AAG AAG AAG AAG AAG AA
50996370 TGGTTCACCT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.69, C:0.00, G:0.31, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:50997726 original size:22 final size:23
Alignment explanation
Indices: 50997685--50997728 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
50997675 TATTAATTTT
**
50997685 AAAAATATTAAATTTATTTGTAA
1 AAAAATATTAAAAATATTTGTAA
50997708 AAAAATATTAAAAAT-TTTGTA
1 AAAAATATTAAAAATATTTGTA
50997729 CATTTTCACA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 6 0.32
23 13 0.68
ACGTcount: A:0.55, C:0.00, G:0.05, T:0.41
Consensus pattern (23 bp):
AAAAATATTAAAAATATTTGTAA
Found at i:50997950 original size:39 final size:39
Alignment explanation
Indices: 50997890--50997986 Score: 103
Period size: 39 Copynumber: 2.5 Consensus size: 39
50997880 AATTATTTAT
* * *
50997890 TATAAATTTTATA-TAA-AATTTTAAAATTTATTAGTTAA-
1 TATAACTTTTATATTAATTATTTTAAAAATTATTA--TAAG
**
50997928 TATATGTTTTA-ATTAATTATTTTAAAAATTATTATAAG
1 TATAACTTTTATATTAATTATTTTAAAAATTATTATAAG
50997966 TATAACTTTTATATTAATTAT
1 TATAACTTTTATATTAATTAT
50997987 AATCCTTGAG
Statistics
Matches: 49, Mismatches: 6, Indels: 7
0.79 0.10 0.11
Matches are distributed among these distances:
37 4 0.08
38 21 0.43
39 24 0.49
ACGTcount: A:0.43, C:0.01, G:0.03, T:0.53
Consensus pattern (39 bp):
TATAACTTTTATATTAATTATTTTAAAAATTATTATAAG
Found at i:51000810 original size:19 final size:18
Alignment explanation
Indices: 51000786--51000821 Score: 54
Period size: 19 Copynumber: 1.9 Consensus size: 18
51000776 ATACACATAT
51000786 TTTTATAATTTATAATTTC
1 TTTTATAATTTA-AATTTC
*
51000805 TTTTATATTTTAAATTT
1 TTTTATAATTTAAATTT
51000822 TTTATATATT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 5 0.31
19 11 0.69
ACGTcount: A:0.31, C:0.03, G:0.00, T:0.67
Consensus pattern (18 bp):
TTTTATAATTTAAATTTC
Found at i:51000820 original size:18 final size:18
Alignment explanation
Indices: 51000785--51000833 Score: 64
Period size: 18 Copynumber: 2.7 Consensus size: 18
51000775 GATACACATA
*
51000785 TTTTTATAATTTATAATT
1 TTTTTATATTTTATAATT
51000803 TCTTTTATATTTTA-AATT
1 T-TTTTATATTTTATAATT
51000821 TTTTATATATTTT
1 TTTT-TATATTTT
51000834 CTTTTAATTT
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
17 3 0.11
18 14 0.50
19 11 0.39
ACGTcount: A:0.29, C:0.02, G:0.00, T:0.69
Consensus pattern (18 bp):
TTTTTATATTTTATAATT
Found at i:51000837 original size:30 final size:32
Alignment explanation
Indices: 51000796--51000859 Score: 89
Period size: 30 Copynumber: 2.1 Consensus size: 32
51000786 TTTTATAATT
51000796 TATAATTTCTTTT-ATATTTTAAAT-T-TTTTA
1 TATAATTTCTTTTAAT-TTTTAAATATCTTTTA
*
51000826 TATATTTTCTTTTAATTTTTAAATATCTTTTA
1 TATAATTTCTTTTAATTTTTAAATATCTTTTA
51000858 TA
1 TA
51000860 AAAAATAGAT
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
30 20 0.67
31 3 0.10
32 7 0.23
ACGTcount: A:0.30, C:0.05, G:0.00, T:0.66
Consensus pattern (32 bp):
TATAATTTCTTTTAATTTTTAAATATCTTTTA
Found at i:51002163 original size:16 final size:17
Alignment explanation
Indices: 51002121--51002164 Score: 63
Period size: 18 Copynumber: 2.6 Consensus size: 17
51002111 TAAGTAATCA
*
51002121 GTATAGGCGAACCCCCT
1 GTATATGCGAACCCCCT
51002138 GTAGTATGCGAACCCCCT
1 GTA-TATGCGAACCCCCT
51002156 GT-TATGCGA
1 GTATATGCGA
51002165 CCCTCTGTGT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
16 7 0.28
17 3 0.12
18 15 0.60
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.23
Consensus pattern (17 bp):
GTATATGCGAACCCCCT
Found at i:51005487 original size:124 final size:124
Alignment explanation
Indices: 51005266--51005642 Score: 533
Period size: 124 Copynumber: 3.0 Consensus size: 124
51005256 TTAGGGTTTT
* *** * * * *
51005266 TAGGTCCTGGAAGAAATAATTTCGAGTTGACATTTCTGATCAAATAGTATAAAATCGCTTTTAGC
1 TAGGTCATGGAAGAAATAATTT-TTTTTTACTTTTCTGAGCAAATAGTATAAAATCGCTTCTAGC
* * * * *
51005331 AGGATGTTATTTTAGAAGAATTTGTGAAATCGCGCCCTCGTAGACGCGCTTTTACTACAG
65 AGGATGCTATTTGAGAAGAATTTGTAAAATCGCGCCCTCGTGGACGCGCTTTTGCTACAG
51005391 TAGGTCATGGAAGAAATAATTTTTTTTTACTTTTCTGAGCAAATAGTATAAAATCGCTTCTAGCA
1 TAGGTCATGGAAGAAATAATTTTTTTTTACTTTTCTGAGCAAATAGTATAAAATCGCTTCTAGCA
*
51005456 GGATGCTATTTGAGAAGAATTTGTAAAATCGCGCCCTCGTGGACGCGTTTTTGCTACAG
66 GGATGCTATTTGAGAAGAATTTGTAAAATCGCGCCCTCGTGGACGCGCTTTTGCTACAG
* *
51005515 TCGGTCATGGAAGAAAT-ATTTTTTTTTGA-TGTTTCTGAGCTAATAGTATAAAATCGCTTCTAG
1 TAGGTCATGGAAGAAATAATTTTTTTTT-ACT-TTTCTGAGCAAATAGTATAAAATCGCTTCTAG
* * *
51005578 CAGGATGCTATTTGAAAAGAAATTGTGAAAATCGCGCCCTTGTGGACGCGCTTTTGCTACAG
64 CAGGATGCTATTTGAGAAGAATTTGT-AAAATCGCGCCCTCGTGGACGCGCTTTTGCTACAG
51005640 TAG
1 TAG
51005643 CATGTTTGGG
Statistics
Matches: 228, Mismatches: 21, Indels: 6
0.89 0.08 0.02
Matches are distributed among these distances:
123 11 0.05
124 161 0.71
125 56 0.25
ACGTcount: A:0.29, C:0.15, G:0.21, T:0.34
Consensus pattern (124 bp):
TAGGTCATGGAAGAAATAATTTTTTTTTACTTTTCTGAGCAAATAGTATAAAATCGCTTCTAGCA
GGATGCTATTTGAGAAGAATTTGTAAAATCGCGCCCTCGTGGACGCGCTTTTGCTACAG
Found at i:51008932 original size:23 final size:23
Alignment explanation
Indices: 51008906--51009662 Score: 675
Period size: 23 Copynumber: 34.5 Consensus size: 23
51008896 TAGTTTAATT
*
51008906 TTTTTAA-TTAACTTAGTTTAGGG
1 TTTTTAAGTTAA-TTAGGTTAGGG
* *
51008929 TTTTAAAGTTAA--GGGTTAGGG
1 TTTTTAAGTTAATTAGGTTAGGG
*
51008950 TTTTTAAGTTAA--GGGTTTAGGG
1 TTTTTAAGTTAATTAGG-TTAGGG
* **
51008972 TTTTTAAGTTAA--GGGTTAATG
1 TTTTTAAGTTAATTAGGTTAGGG
*
51008993 TTTTTAATTTAATTAGGTTAGGTTAGGG
1 TTTTTAAGTT-A--A--TTAGGTTAGGG
51009021 TTTTTAAGTTAATTAGGTTAGGG
1 TTTTTAAGTTAATTAGGTTAGGG
*
51009044 TTTTTAA-TTAA--A--ATAGGG
1 TTTTTAAGTTAATTAGGTTAGGG
*
51009062 TTTTTAATTTAATTAGGTTAGGG
1 TTTTTAAGTTAATTAGGTTAGGG
51009085 TTTTTTAAGTTAATTAGGTTA-GG
1 -TTTTTAAGTTAATTAGGTTAGGG
***
51009108 TTTTT---TTAATTAAAATAGGG
1 TTTTTAAGTTAATTAGGTTAGGG
*
51009128 TTTTTAA-TTAAATTAGGTTAGTGT
1 TTTTTAAGTT-AATTAGGTTAG-GG
* *
51009152 TTTTTAAGTTAATAAGGTTAGAG
1 TTTTTAAGTTAATTAGGTTAGGG
*
51009175 TTTTTAA-TTAA--A--ATAGGG
1 TTTTTAAGTTAATTAGGTTAGGG
**
51009193 TTTTTACTTTAATTAGGTTAGGG
1 TTTTTAAGTTAATTAGGTTAGGG
51009216 TTTTTAAGTTAA-T-GGTTAGGG
1 TTTTTAAGTTAATTAGGTTAGGG
*
51009237 TTTTTAATTTAATTAGGTTAGGG
1 TTTTTAAGTTAATTAGGTTAGGG
*
51009260 TTTTTAA-TTAA--A--ATAGGG
1 TTTTTAAGTTAATTAGGTTAGGG
*
51009278 TTTTTAA-TTAAATTAGGTTAGGAT
1 TTTTTAAGTT-AATTAGGTTAGG-G
51009302 TTTTTAAGTTAATTAGGTTAGGG
1 TTTTTAAGTTAATTAGGTTAGGG
*
51009325 TTTTTAA-TTAA--A--ATAGGG
1 TTTTTAAGTTAATTAGGTTAGGG
* *
51009343 TGTTTAATTTAATTAGGTTAGGG
1 TTTTTAAGTTAATTAGGTTAGGG
*
51009366 TTTTTAAGTTAA--GGGTTAGGG
1 TTTTTAAGTTAATTAGGTTAGGG
*
51009387 TTTTTAATTTAATTAGGTTAGGG
1 TTTTTAAGTTAATTAGGTTAGGG
*
51009410 TTTTTAATTTAATTAGGTTAGGG
1 TTTTTAAGTTAATTAGGTTAGGG
51009433 TTTTTTAAGTTAATTAGGTTAGGG
1 -TTTTTAAGTTAATTAGGTTAGGG
*
51009457 TTTTTAA-TTAA--A--ATAGGG
1 TTTTTAAGTTAATTAGGTTAGGG
*
51009475 TTTTTAATTTAATTAGGTTAGGG
1 TTTTTAAGTTAATTAGGTTAGGG
*
51009498 TTTTTTAAGTTAATTAGGTTAGGT
1 -TTTTTAAGTTAATTAGGTTAGGG
*
51009522 TTTTTAATTTAA--A---TAGGG
1 TTTTTAAGTTAATTAGGTTAGGG
*
51009540 TTTTTAA-TTAAATTAGGGTAGGG
1 TTTTTAAGTT-AATTAGGTTAGGG
51009563 TTTTTTAAGTTAATTAGGTTAGGG
1 -TTTTTAAGTTAATTAGGTTAGGG
*
51009587 TTTTTAA-TTAA--A--ATAGGG
1 TTTTTAAGTTAATTAGGTTAGGG
*
51009605 TTTTTAATTTAATTAGGTTAGGG
1 TTTTTAAGTTAATTAGGTTAGGG
*
51009628 TTTTTAATTTAATTAGGTTAGGG
1 TTTTTAAGTTAATTAGGTTAGGG
51009651 TTTTTAAGTTAA
1 TTTTTAAGTTAA
51009663 GAGTATTAAT
Statistics
Matches: 618, Mismatches: 54, Indels: 124
0.78 0.07 0.16
Matches are distributed among these distances:
17 2 0.00
18 84 0.14
19 31 0.05
20 14 0.02
21 79 0.13
22 55 0.09
23 207 0.33
24 123 0.20
25 7 0.01
27 1 0.00
28 15 0.02
ACGTcount: A:0.29, C:0.00, G:0.22, T:0.49
Consensus pattern (23 bp):
TTTTTAAGTTAATTAGGTTAGGG
Found at i:51008970 original size:43 final size:43
Alignment explanation
Indices: 51008921--51009004 Score: 132
Period size: 43 Copynumber: 2.0 Consensus size: 43
51008911 AATTAACTTA
*
51008921 GTTTAGGGTTTTAAAGTTAAGGGTTAGGGTTTTTAAGTTAAGG
1 GTTTAGGGTTTTAAAGTTAAGGGTTAAGGTTTTTAAGTTAAGG
* * *
51008964 GTTTAGGGTTTTTAAGTTAAGGGTTAATGTTTTTAATTTAA
1 GTTTAGGGTTTTAAAGTTAAGGGTTAAGGTTTTTAAGTTAA
51009005 TTAGGTTAGG
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
43 37 1.00
ACGTcount: A:0.26, C:0.00, G:0.27, T:0.46
Consensus pattern (43 bp):
GTTTAGGGTTTTAAAGTTAAGGGTTAAGGTTTTTAAGTTAAGG
Found at i:51009016 original size:28 final size:28
Alignment explanation
Indices: 51008985--51009042 Score: 89
Period size: 28 Copynumber: 2.1 Consensus size: 28
51008975 TTAAGTTAAG
* *
51008985 GGTTAATGTTTTTAATTTAATTAGGTTA
1 GGTTAAGGTTTTTAAGTTAATTAGGTTA
*
51009013 GGTTAGGGTTTTTAAGTTAATTAGGTTA
1 GGTTAAGGTTTTTAAGTTAATTAGGTTA
51009041 GG
1 GG
51009043 GTTTTTAATT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.26, C:0.00, G:0.26, T:0.48
Consensus pattern (28 bp):
GGTTAAGGTTTTTAAGTTAATTAGGTTA
Found at i:51009062 original size:41 final size:43
Alignment explanation
Indices: 51009014--51009662 Score: 548
Period size: 41 Copynumber: 15.0 Consensus size: 43
51009004 ATTAGGTTAG
51009014 GTTAGGGTTTTTAAGTTAATTAGGTTAGGGTTTTTAA-TTAA-A
1 GTTAGGGTTTTTAA-TTAATTAGGTTAGGGTTTTTAAGTTAATA
*
51009056 -ATAGGGTTTTTAATTTAATTAGGTTAGGGTTTTTTAAGTTAATTA
1 GTTAGGGTTTTTAA-TTAATTAGGTTAGGG-TTTTTAAGTTAA-TA
***
51009101 GGTTA-GGTTTTT--TTAATTAAAATAGGGTTTTTAA-TTAAATTA
1 -GTTAGGGTTTTTAATTAATTAGGTTAGGGTTTTTAAGTT-AA-TA
* * *
51009143 GGTTAGTGTTTTTTAAGTTAATAAGGTTAGAGTTTTTAA-TTAA-A
1 -GTTAG-GGTTTTTAA-TTAATTAGGTTAGGGTTTTTAAGTTAATA
* * *
51009187 -ATAGGGTTTTTACTTTAATTAGGTTAGGGTTTTTAAGTTAATG
1 GTTAGGGTTTTTA-ATTAATTAGGTTAGGGTTTTTAAGTTAATA
51009230 GTTAGGGTTTTTAATTTAATTAGGTTAGGGTTTTTAA-TTAA-A
1 GTTAGGGTTTTTAA-TTAATTAGGTTAGGGTTTTTAAGTTAATA
* *
51009272 -ATAGGGTTTTTAATTAAATTAGGTTAGGATTTTTTAAGTTAATTA
1 GTTAGGGTTTTTAATT-AATTAGGTTAGG-GTTTTTAAGTTAA-TA
* * *
51009317 GGTTAGGGTTTTTAATTAA--A--ATAGGGTGTTTAATTTAATTA
1 -GTTAGGGTTTTTAATTAATTAGGTTAGGGTTTTTAAGTTAA-TA
* *
51009358 GGTTAGGGTTTTTAAGTTAA--GGGTTAGGGTTTTTAATTTAATTA
1 -GTTAGGGTTTTTAA-TTAATTAGGTTAGGGTTTTTAAGTTAA-TA
51009402 GGTTAGGGTTTTTAATTTAATTAGGTTAGGGTTTTTTAAGTTAATTA
1 -GTTAGGGTTTTTAA-TTAATTAGGTTAGGG-TTTTTAAGTTAA-TA
* *
51009449 GGTTAGGGTTTTTAATTAA--A--ATAGGGTTTTTAATTTAATTA
1 -GTTAGGGTTTTTAATTAATTAGGTTAGGGTTTTTAAGTTAA-TA
* *
51009490 GGTTAGGGTTTTTTAAGTTAATTAGGTTAGGTTTTTTAATTTAA-A
1 -GTTAGGG-TTTTTAA-TTAATTAGGTTAGGGTTTTTAAGTTAATA
*
51009535 --TAGGGTTTTTAATTAAATTAGGGTAGGGTTTTTTAAGTTAATTA
1 GTTAGGGTTTTTAATT-AATTAGGTTAGGG-TTTTTAAGTTAA-TA
* *
51009579 GGTTAGGGTTTTTAATTAA--A--ATAGGGTTTTTAATTTAATTA
1 -GTTAGGGTTTTTAATTAATTAGGTTAGGGTTTTTAAGTTAA-TA
51009620 GGTTAGGGTTTTTAATTTAATTAGGTTAGGGTTTTTAAGTTAA
1 -GTTAGGGTTTTTAA-TTAATTAGGTTAGGGTTTTTAAGTTAA
51009663 GAGTATTAAT
Statistics
Matches: 514, Mismatches: 45, Indels: 92
0.79 0.07 0.14
Matches are distributed among these distances:
40 4 0.01
41 177 0.34
42 83 0.16
43 28 0.05
44 83 0.16
45 4 0.01
46 41 0.08
47 94 0.18
ACGTcount: A:0.29, C:0.00, G:0.22, T:0.49
Consensus pattern (43 bp):
GTTAGGGTTTTTAATTAATTAGGTTAGGGTTTTTAAGTTAATA
Found at i:51009155 original size:65 final size:65
Alignment explanation
Indices: 51008942--51009644 Score: 533
Period size: 65 Copynumber: 10.8 Consensus size: 65
51008932 TAAAGTTAAG
* * * **
51008942 GGTTAGGGTTTTTAAGTTAA--GGGTTTAGGGTTTTTAAGTTAAGGGTTAATGTTTTTAATTTAA
1 GGTTAGGGTTTTTAAGTTAATTAGG-TTAGGTTTTTTAAGTTAA--ATTAGGGTTTTTAA-TTAA
51009005 TTAGGTTA
62 --A--TTA
* * *
51009013 GGTTAGGGTTTTTAAGTTAATTAGGTTAGGGTTTTTAA-TTAAAATAGGGTTTTTAATTTAATTA
1 GGTTAGGGTTTTTAAGTTAATTAGGTTAGGTTTTTTAAGTTAAATTAGGGTTTTTAATTAAATTA
*
51009077 GGTTAGGGTTTTTTAAGTTAATTAGGTTAGGTTTTTTTAA-TTAAAATAGGGTTTTTAATTAAAT
1 GGTTAGGG-TTTTTAAGTTAATTAGGTTAGG-TTTTTTAAGTTAAATTAGGGTTTTTAATTAAAT
51009141 TA
64 TA
* * * * *
51009143 GGTTAGTGTTTTTTAAGTTAATAAGGTTAGAG-TTTTTAA-TTAAAATAGGGTTTTTACTTTAAT
1 GGTTAG-GGTTTTTAAGTTAATTAGGTTAG-GTTTTTTAAGTTAAATTAGGGTTTTTAATTAAAT
51009206 TA
64 TA
* *
51009208 GGTTAGGGTTTTTAAGTTAA-T-GGTTAGGGTTTTTAATTTAATTAGGTTAGGGTTTTTAATTAA
1 GGTTAGGGTTTTTAAGTTAATTAGGTTAGGTTTTTTAAGTTAA--A--TTAGGGTTTTTAATTAA
51009271 A--A
62 ATTA
51009273 ---TAGGGTTTTTAA-TTAAATTAGGTTAGGATTTTTTAAGTTAATTAGGTTAGGGTTTTTAATT
1 GGTTAGGGTTTTTAAGTT-AATTAGGTTAGG-TTTTTTAAGTTAA--A--TTAGGGTTTTTAATT
51009334 AAA--A
60 AAATTA
* * * * *
51009338 ---TAGGGTGTTTAATTTAATTAGGTTAGGGTTTTTAAGTTAAGGGTTAGGGTTTTTAATTTAAT
1 GGTTAGGGTTTTTAAGTTAATTAGGTTAGGTTTTTTAAGTTAA--ATTAGGGTTTTTAATTAAAT
51009400 TA
64 TA
*
51009402 GGTTAGGGTTTTTAATTTAATTAGGTTAGGGTTTTTTAAGTTAATTAGGTTAGGGTTTTTAATTA
1 GGTTAGGGTTTTTAAGTTAATTAGGTTA-GGTTTTTTAAGTTAA--A--TTAGGGTTTTTAATTA
51009467 AA--A
61 AATTA
* * *
51009470 ---TAGGGTTTTTAATTTAATTAGGTTAGGGTTTTTTAAGTTAATTAGGTTAGGTTTTTTAATTT
1 GGTTAGGGTTTTTAAGTTAATTAGGTTA-GGTTTTTTAAGTTAA--A--TTAGGGTTTTTAATTA
51009532 AA--A
61 AATTA
*
51009535 ---TAGGGTTTTTAA-TTAAATTAGGGTAGGGTTTTTTAAGTTAATTAGGTTAGGGTTTTTAATT
1 GGTTAGGGTTTTTAAGTT-AATTAGGTTA-GGTTTTTTAAGTTAA--A--TTAGGGTTTTTAATT
51009596 AAA--A
60 AAATTA
* * *
51009600 ---TAGGGTTTTTAATTTAATTAGGTTAGGGTTTTTAA-TTTAATTAGG
1 GGTTAGGGTTTTTAAGTTAATTAGGTTAGGTTTTTTAAGTTAAATTAGG
51009645 TTAGGGTTTT
Statistics
Matches: 566, Mismatches: 39, Indels: 66
0.84 0.06 0.10
Matches are distributed among these distances:
59 5 0.01
61 4 0.01
62 44 0.08
63 8 0.01
64 55 0.10
65 262 0.46
66 63 0.11
67 41 0.07
68 18 0.03
69 10 0.02
70 17 0.03
71 24 0.04
72 13 0.02
73 2 0.00
ACGTcount: A:0.29, C:0.00, G:0.22, T:0.49
Consensus pattern (65 bp):
GGTTAGGGTTTTTAAGTTAATTAGGTTAGGTTTTTTAAGTTAAATTAGGGTTTTTAATTAAATTA
Found at i:51009306 original size:150 final size:152
Alignment explanation
Indices: 51009057--51009636 Score: 651
Period size: 150 Copynumber: 3.8 Consensus size: 152
51009047 TTAATTAAAA
* * *
51009057 TAGGGTTTTTAATTTAATTAGGTTAGGGTTTTTTAAGTTAATTAGGTTAGGTTTTTTTAA-TTAA
1 TAGGGTTTTTAAGTTAA-T-GGTTAGGG-TTTTTAATTTAATTAGGTTAGG-GTTTTTAAGTTAA
*
51009121 -A-ATAGGGTTTTTAATTAAATTAGGTTAGTGTTTTTTAAGTTAATAAGGTTAGAGTTTTTAATT
62 TAGATAGGGTTTTTAATTAAATTAGGTTAG-GTTTTTTAAGTTAATAAGGTTAGGGTTTTTAATT
*
51009184 AAAATAGGGTTTTTACTTTAATTAGGT
126 AAAATAGGGTTTTTAATTTAATTAGGT
51009211 TAGGGTTTTTAAGTTAATGGTTAGGGTTTTTAATTTAATTAGGTTAGGGTTTTTAA-TTAA-A-A
1 TAGGGTTTTTAAGTTAATGGTTAGGGTTTTTAATTTAATTAGGTTAGGGTTTTTAAGTTAATAGA
*
51009273 TAGGGTTTTTAATTAAATTAGGTTAGGATTTTTTAAGTTAATTAGGTTAGGGTTTTTAATTAAAA
66 TAGGGTTTTTAATTAAATTAGGTTAGG-TTTTTTAAGTTAATAAGGTTAGGGTTTTTAATTAAAA
*
51009338 TAGGGTGTTTAATTTAATTAGGT
130 TAGGGTTTTTAATTTAATTAGGT
* *
51009361 TAGGGTTTTTAAGTTAAGGGTTAGGGTTTTTAATTTAATTAGGTTAGGGTTTTTAATTTAATTAG
1 TAGGGTTTTTAAGTTAATGGTTAGGGTTTTTAATTTAATTAGGTTAGGGTTTTTAAGTTAA-TA-
* *
51009426 GTTAGGGTTTTTTAAGTT-AATTAGGTTAGGGTTTTTAA-TTAA-AA---TAGGGTTTTTAATTT
64 GATAGGG-TTTTTAA-TTAAATTAGGTTAGGTTTTTTAAGTTAATAAGGTTAGGGTTTTTAA-TT
* *
51009485 AATTAGGTTAGGGTTTTTTAAGTTAATTAGGT
126 AA--A--ATAGGG-TTTTTAATTTAATTAGGT
* * * * *
51009517 TAGGTTTTTTAATTTAA---ATAGGGTTTTTAATTAAATTAGGGTAGGGTTTTTTAAGTTAATTA
1 TAGGGTTTTTAAGTTAATGGTTAGGGTTTTTAATTTAATTAGGTTAGGG-TTTTTAAGTTAA-TA
* * * *
51009579 GGTTAGGGTTTTTAATTAAA--A---TAGGGTTTTTAATTTAATTAGGTTAGGGTTTTTAATT
64 -GATAGGGTTTTTAATTAAATTAGGTTAGGTTTTTTAAGTTAATAAGGTTAGGGTTTTTAATT
51009637 TAATTAGGTT
Statistics
Matches: 384, Mismatches: 21, Indels: 44
0.86 0.05 0.10
Matches are distributed among these distances:
148 12 0.03
149 5 0.01
150 163 0.42
151 30 0.08
152 12 0.03
153 51 0.13
154 42 0.11
155 17 0.04
156 50 0.13
157 2 0.01
ACGTcount: A:0.29, C:0.00, G:0.22, T:0.49
Consensus pattern (152 bp):
TAGGGTTTTTAAGTTAATGGTTAGGGTTTTTAATTTAATTAGGTTAGGGTTTTTAAGTTAATAGA
TAGGGTTTTTAATTAAATTAGGTTAGGTTTTTTAAGTTAATAAGGTTAGGGTTTTTAATTAAAAT
AGGGTTTTTAATTTAATTAGGT
Found at i:51009657 original size:18 final size:18
Alignment explanation
Indices: 51009572--51009636 Score: 58
Period size: 18 Copynumber: 3.3 Consensus size: 18
51009562 GTTTTTTAAG
51009572 TTAATTAGGTTAGGGTTT
1 TTAATTAGGTTAGGGTTT
***
51009590 TTAATTAAAATAGGGTTTTTAAT
1 TTAATTAGGTTAGGG---TT--T
51009613 TTAATTAGGTTAGGGTTT
1 TTAATTAGGTTAGGGTTT
51009631 TTAATT
1 TTAATT
51009637 TAATTAGGTT
Statistics
Matches: 36, Mismatches: 6, Indels: 10
0.69 0.12 0.19
Matches are distributed among these distances:
18 19 0.53
20 2 0.06
21 2 0.06
23 13 0.36
ACGTcount: A:0.29, C:0.00, G:0.20, T:0.51
Consensus pattern (18 bp):
TTAATTAGGTTAGGGTTT
Found at i:51009721 original size:18 final size:16
Alignment explanation
Indices: 51009693--51009728 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 16
51009683 ATTCTCAAAT
51009693 AATATCAAAATATTCAA
1 AATATCAAAATATT-AA
51009710 AATATGCAAAATATTAA
1 AATAT-CAAAATATTAA
51009727 AA
1 AA
51009729 AATTTCTATT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 9 0.50
18 9 0.50
ACGTcount: A:0.61, C:0.08, G:0.03, T:0.28
Consensus pattern (16 bp):
AATATCAAAATATTAA
Found at i:51009729 original size:18 final size:17
Alignment explanation
Indices: 51009693--51009729 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 17
51009683 ATTCTCAAAT
*
51009693 AATATCAAAATATTCAA
1 AATATCAAAATATTAAA
51009710 AATATGCAAAATATTAAA
1 AATAT-CAAAATATTAAA
51009728 AA
1 AA
51009730 ATTTCTATTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 5 0.28
18 13 0.72
ACGTcount: A:0.62, C:0.08, G:0.03, T:0.27
Consensus pattern (17 bp):
AATATCAAAATATTAAA
Found at i:51010206 original size:18 final size:18
Alignment explanation
Indices: 51010183--51010222 Score: 71
Period size: 18 Copynumber: 2.2 Consensus size: 18
51010173 GACTCGGAAA
*
51010183 AGGATACATATAAGGGTT
1 AGGATACATATAAGGGCT
51010201 AGGATACATATAAGGGCT
1 AGGATACATATAAGGGCT
51010219 AGGA
1 AGGA
51010223 AACGCACCTG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.40, C:0.07, G:0.30, T:0.23
Consensus pattern (18 bp):
AGGATACATATAAGGGCT
Found at i:51012092 original size:50 final size:51
Alignment explanation
Indices: 51012037--51012151 Score: 198
Period size: 50 Copynumber: 2.3 Consensus size: 51
51012027 TATTTTAAAA
51012037 AAGGAAATTGAGAGCAA-ATGGAAATTAAATATGGA-TTTAGAGAATTTTGG
1 AAGGAAATTGAGAG-AATATGGAAATTAAATATGGATTTTAGAGAATTTTGG
*
51012087 AAGGAAATTGAGAGAATATTGAAATTAAATATGGATTTTAGAGAATTTTGG
1 AAGGAAATTGAGAGAATATGGAAATTAAATATGGATTTTAGAGAATTTTGG
51012138 AAGGAAATTGAGAG
1 AAGGAAATTGAGAG
51012152 GAATTTGAGA
Statistics
Matches: 62, Mismatches: 1, Indels: 3
0.94 0.02 0.05
Matches are distributed among these distances:
49 2 0.03
50 31 0.50
51 29 0.47
ACGTcount: A:0.44, C:0.01, G:0.26, T:0.29
Consensus pattern (51 bp):
AAGGAAATTGAGAGAATATGGAAATTAAATATGGATTTTAGAGAATTTTGG
Found at i:51012102 original size:22 final size:22
Alignment explanation
Indices: 51012075--51012169 Score: 59
Period size: 22 Copynumber: 4.0 Consensus size: 22
51012065 ATATGGATTT
51012075 AGAGAATTTTGGAAGGAAATTG
1 AGAGAATTTTGGAAGGAAATTG
* * **
51012097 AGAGAATATTGAAATTAAATATGG
1 AGAGAATTTTGGAAGGAAAT-T-G
51012121 ATTTTAGAGAATTTTGGAAGGAAATTG
1 -----AGAGAATTTTGGAAGGAAATTG
51012148 AGAGGAA-TTT-GAGAGGAAATTG
1 AGA-GAATTTTGGA-AGGAAATTG
51012170 GGAGGAAATA
Statistics
Matches: 56, Mismatches: 8, Indels: 18
0.68 0.10 0.22
Matches are distributed among these distances:
21 2 0.04
22 31 0.55
23 4 0.07
24 1 0.02
27 1 0.02
28 1 0.02
29 16 0.29
ACGTcount: A:0.42, C:0.00, G:0.28, T:0.29
Consensus pattern (22 bp):
AGAGAATTTTGGAAGGAAATTG
Found at i:51012148 original size:51 final size:50
Alignment explanation
Indices: 51012037--51012159 Score: 196
Period size: 51 Copynumber: 2.4 Consensus size: 50
51012027 TATTTTAAAA
*
51012037 AAGGAAATTGAGAGCAA-ATGGAAATTAAATATGGATTTAGAGAATTTTGG
1 AAGGAAATTGAGAG-AATATTGAAATTAAATATGGATTTAGAGAATTTTGG
51012087 AAGGAAATTGAGAGAATATTGAAATTAAATATGGATTTTAGAGAATTTTGG
1 AAGGAAATTGAGAGAATATTGAAATTAAATATGGA-TTTAGAGAATTTTGG
51012138 AAGGAAATTGAGAGGAAT-TTGA
1 AAGGAAATTGAGA-GAATATTGA
51012160 GAGGAAATTG
Statistics
Matches: 69, Mismatches: 1, Indels: 5
0.92 0.01 0.07
Matches are distributed among these distances:
49 2 0.03
50 31 0.45
51 32 0.46
52 4 0.06
ACGTcount: A:0.44, C:0.01, G:0.26, T:0.29
Consensus pattern (50 bp):
AAGGAAATTGAGAGAATATTGAAATTAAATATGGATTTAGAGAATTTTGG
Found at i:51012159 original size:11 final size:11
Alignment explanation
Indices: 51012139--51012185 Score: 67
Period size: 11 Copynumber: 4.2 Consensus size: 11
51012129 GAATTTTGGA
51012139 AGGAAATTGAG
1 AGGAAATTGAG
*
51012150 AGGAATTTGAG
1 AGGAAATTGAG
*
51012161 AGGAAATTGGG
1 AGGAAATTGAG
51012172 AGGAAATATGAG
1 AGGAAAT-TGAG
51012184 AG
1 AG
51012186 AGGATTAGTT
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
11 26 0.84
12 5 0.16
ACGTcount: A:0.43, C:0.00, G:0.38, T:0.19
Consensus pattern (11 bp):
AGGAAATTGAG
Found at i:51014943 original size:25 final size:25
Alignment explanation
Indices: 51014914--51014967 Score: 99
Period size: 25 Copynumber: 2.2 Consensus size: 25
51014904 TCTGCTGGTT
*
51014914 CTCTGCTGGTGCTGGTTCTTTGTTC
1 CTCTGCTGGCGCTGGTTCTTTGTTC
51014939 CTCTGCTGGCGCTGGTTCTTTGTTC
1 CTCTGCTGGCGCTGGTTCTTTGTTC
51014964 CTCT
1 CTCT
51014968 TTTCCACTTC
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
25 28 1.00
ACGTcount: A:0.00, C:0.28, G:0.26, T:0.46
Consensus pattern (25 bp):
CTCTGCTGGCGCTGGTTCTTTGTTC
Found at i:51015757 original size:13 final size:13
Alignment explanation
Indices: 51015707--51015757 Score: 59
Period size: 13 Copynumber: 3.9 Consensus size: 13
51015697 ACACTCAAAG
*
51015707 TTTTCAAAAACAC
1 TTTTCAAAAGCAC
*
51015720 TCTTCAAAAGCAC
1 TTTTCAAAAGCAC
*
51015733 TTTTTC-ACAGCAC
1 -TTTTCAAAAGCAC
51015746 TTTTCAAAAGCA
1 TTTTCAAAAGCA
51015758 ATGAAGAACT
Statistics
Matches: 31, Mismatches: 5, Indels: 4
0.77 0.12 0.10
Matches are distributed among these distances:
12 5 0.16
13 22 0.71
14 4 0.13
ACGTcount: A:0.37, C:0.25, G:0.06, T:0.31
Consensus pattern (13 bp):
TTTTCAAAAGCAC
Found at i:51023728 original size:2 final size:2
Alignment explanation
Indices: 51023721--51023753 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
51023711 AATATTATTT
51023721 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
51023754 TTTACATCCA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:51028471 original size:2 final size:2
Alignment explanation
Indices: 51028460--51028493 Score: 61
Period size: 2 Copynumber: 17.5 Consensus size: 2
51028450 TCAAATCATC
51028460 TA TA -A TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
51028494 GTAAGTACAT
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 30 0.97
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:51036988 original size:105 final size:105
Alignment explanation
Indices: 51036866--51037077 Score: 266
Period size: 105 Copynumber: 2.0 Consensus size: 105
51036856 TATAGGTAAT
*
51036866 AACATCGGGCTCAATGCCTCGTTTTATCATTGTGTCAACAATATCCT-CAGCTTTAGAAACCATC
1 AACATCGGGCTCAATGCCTCGCTTTATCATTGTGTCAACAATAT-CTACAGCTTTAGAAACCATC
** *
51036930 CCTTCTTTGCA-ATGTGCATCAACCAATGTAGAATACGTGAC
65 CCTTCCGTGCACA-GTGCATCAACCAATATAGAATACGTGAC
* * * * * * * *
51036971 AACATTGGGTTCAATGCCTTGCTTTCTCATTGTGTCAACGATCTCTACAGCTTTAGAAATCATTC
1 AACATCGGGCTCAATGCCTCGCTTTATCATTGTGTCAACAATATCTACAGCTTTAGAAACCATCC
* *
51037036 CTTCCGTGCACAGTGCATCAACCAATATGGTATACGTGAC
66 CTTCCGTGCACAGTGCATCAACCAATATAGAATACGTGAC
51037076 AA
1 AA
51037078 TATCAAGTGA
Statistics
Matches: 91, Mismatches: 14, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
104 2 0.02
105 88 0.97
106 1 0.01
ACGTcount: A:0.28, C:0.25, G:0.16, T:0.31
Consensus pattern (105 bp):
AACATCGGGCTCAATGCCTCGCTTTATCATTGTGTCAACAATATCTACAGCTTTAGAAACCATCC
CTTCCGTGCACAGTGCATCAACCAATATAGAATACGTGAC
Found at i:51038658 original size:30 final size:30
Alignment explanation
Indices: 51038624--51038682 Score: 118
Period size: 30 Copynumber: 2.0 Consensus size: 30
51038614 GGGTCAGGCC
51038624 TAACAATTGGGCCTAGCCTATGAACACCTA
1 TAACAATTGGGCCTAGCCTATGAACACCTA
51038654 TAACAATTGGGCCTAGCCTATGAACACCT
1 TAACAATTGGGCCTAGCCTATGAACACCT
51038683 CTCGTTCTTC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.32, C:0.27, G:0.17, T:0.24
Consensus pattern (30 bp):
TAACAATTGGGCCTAGCCTATGAACACCTA
Found at i:51043622 original size:23 final size:23
Alignment explanation
Indices: 51043592--51043655 Score: 65
Period size: 23 Copynumber: 2.8 Consensus size: 23
51043582 TTTTATGCAC
51043592 GCAAGTGATAGTGGCACTACGAT
1 GCAAGTGATAGTGGCACTACGAT
* *** * *
51043615 GCAAGTGAAAGCAACACTATGGT
1 GCAAGTGATAGTGGCACTACGAT
*
51043638 GCAAGTGTTAGTGGCACT
1 GCAAGTGATAGTGGCACT
51043656 TTTGTGCAAA
Statistics
Matches: 30, Mismatches: 11, Indels: 0
0.73 0.27 0.00
Matches are distributed among these distances:
23 30 1.00
ACGTcount: A:0.31, C:0.17, G:0.30, T:0.22
Consensus pattern (23 bp):
GCAAGTGATAGTGGCACTACGAT
Found at i:51056374 original size:45 final size:44
Alignment explanation
Indices: 51056309--51056399 Score: 137
Period size: 45 Copynumber: 2.0 Consensus size: 44
51056299 CTAAATTTAA
* *
51056309 TTTAATTGTTTTGTTATTTATTTTGAAGCAAATAAAATTATATTT
1 TTTAATTATTTTATTATTTATTTTGAAGCAAATAAAATTAT-TTT
* *
51056354 TTTAATTATTTTATTTTTTATTTTGAAGCAAATAAGATTATTTT
1 TTTAATTATTTTATTATTTATTTTGAAGCAAATAAAATTATTTT
51056398 TT
1 TT
51056400 AGGTGAGTAT
Statistics
Matches: 42, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
44 5 0.12
45 37 0.88
ACGTcount: A:0.32, C:0.02, G:0.08, T:0.58
Consensus pattern (44 bp):
TTTAATTATTTTATTATTTATTTTGAAGCAAATAAAATTATTTT
Found at i:51058425 original size:16 final size:16
Alignment explanation
Indices: 51058404--51058435 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
51058394 TTCTCATTAG
51058404 TAGATGGTACAGTTTA
1 TAGATGGTACAGTTTA
51058420 TAGATGGTACAGTTTA
1 TAGATGGTACAGTTTA
51058436 GGGCCACATG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.31, C:0.06, G:0.25, T:0.38
Consensus pattern (16 bp):
TAGATGGTACAGTTTA
Found at i:51067017 original size:12 final size:12
Alignment explanation
Indices: 51067000--51067026 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
51066990 AAATTTAAAG
51067000 TTTTTTATAATT
1 TTTTTTATAATT
51067012 TTTTTTATAATT
1 TTTTTTATAATT
51067024 TTT
1 TTT
51067027 ATAATTTTTC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.22, C:0.00, G:0.00, T:0.78
Consensus pattern (12 bp):
TTTTTTATAATT
Found at i:51069356 original size:15 final size:15
Alignment explanation
Indices: 51069336--51069378 Score: 50
Period size: 15 Copynumber: 2.7 Consensus size: 15
51069326 ATTTTTGTGT
51069336 TATTTTAATATTAAA
1 TATTTTAATATTAAA
*
51069351 TATTTTAAGATTTAAA
1 TATTTTAATA-TTAAA
*
51069367 TAATATTAATAT
1 T-ATTTTAATAT
51069379 AATTGAACCT
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
15 9 0.39
16 7 0.30
17 7 0.30
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.51
Consensus pattern (15 bp):
TATTTTAATATTAAA
Found at i:51076550 original size:193 final size:194
Alignment explanation
Indices: 51076175--51076561 Score: 505
Period size: 195 Copynumber: 2.0 Consensus size: 194
51076165 TAAAAGGTTA
51076175 AATAATATTCTCAAGATCTATCTGATTATTAGTCTCTAAGATTAAGCGATAGGTACCAATAACTA
1 AATAATATTCTCAAGATCTATCTGATTATTAGTCTCTAAGATTAAGCGATAGGTACCAATAACTA
* *
51076240 TCACGTCCTCTTTGAGATGGTTCCTATATAGATGAATTTCTCACTTTCTTTCAGTGCCCTGCTTG
66 TCACGTCCGCTTTGAGATGGTTCCTATATAGATGAA-TCCTCACTTTCTTTCAGTGCCCTGCTTG
*
51076305 CAAGGAATCCTTACGTTAAATTAGTAATATGAGTAGTGACACCAAAATCAATCCACCAAGTATTT
130 CAAGGAATCCTTACATTAAATTAGTAATATGAGTAGTGACACCAAAATCAATCCACCAAGTATTT
* * * * *
51076370 AATAATCTTCTCAAGAGTC-ATTTGATTATTAGTCTCTAAGATTAAGCGTTAGGTTCCAATAGCT
1 AATAATATTCTCAAGA-TCTATCTGATTATTAGTCTCTAAGATTAAGCGATAGGTACCAATAACT
* * * ** * *
51076434 ATTACTTCCGCTTTGAGATGGTTCCTCATGTAGATG-A-CCTCACTTTCTTTC-GATTTCTTGGT
65 ATCACGTCCGCTTTGAGATGGTTCCT-ATATAGATGAATCCTCACTTTCTTTCAG-TGCCCTGCT
* ** * * *
51076496 TGTAAGGAATCCTTACATTGGATTAGTAATGTGAGTAGT-AGCTCCAGAATCAATCCACCAAGTA
128 TGCAAGGAATCCTTACATTAAATTAGTAATATGAGTAGTGA-CACCAAAATCAATCCACCAAGTA
51076560 TT
192 TT
51076562 AGAAAGATCT
Statistics
Matches: 167, Mismatches: 21, Indels: 10
0.84 0.11 0.05
Matches are distributed among these distances:
192 2 0.01
193 75 0.45
195 80 0.48
196 10 0.06
ACGTcount: A:0.29, C:0.19, G:0.16, T:0.36
Consensus pattern (194 bp):
AATAATATTCTCAAGATCTATCTGATTATTAGTCTCTAAGATTAAGCGATAGGTACCAATAACTA
TCACGTCCGCTTTGAGATGGTTCCTATATAGATGAATCCTCACTTTCTTTCAGTGCCCTGCTTGC
AAGGAATCCTTACATTAAATTAGTAATATGAGTAGTGACACCAAAATCAATCCACCAAGTATTT
Found at i:51080690 original size:2 final size:2
Alignment explanation
Indices: 51080683--51080709 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
51080673 GAATGTATGC
51080683 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
51080710 GGCAACAATT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:51099405 original size:13 final size:13
Alignment explanation
Indices: 51099387--51099415 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
51099377 AAACAATGGA
51099387 TTTATTTTTATTT
1 TTTATTTTTATTT
51099400 TTTATTTTTATTT
1 TTTATTTTTATTT
51099413 TTT
1 TTT
51099416 CAGAGCTTTC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.14, C:0.00, G:0.00, T:0.86
Consensus pattern (13 bp):
TTTATTTTTATTT
Found at i:51101407 original size:22 final size:22
Alignment explanation
Indices: 51101381--51101422 Score: 75
Period size: 22 Copynumber: 1.9 Consensus size: 22
51101371 TGAAATTATA
51101381 AATATATTAAAATATATAATAT
1 AATATATTAAAATATATAATAT
*
51101403 AATATATTAATATATATAAT
1 AATATATTAAAATATATAAT
51101423 CATATCGTAT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (22 bp):
AATATATTAAAATATATAATAT
Found at i:51101994 original size:22 final size:22
Alignment explanation
Indices: 51101946--51101994 Score: 71
Period size: 22 Copynumber: 2.2 Consensus size: 22
51101936 CGAAATTATA
*
51101946 AATATATTAAAATATATAATAT
1 AATATATTAAAATATATAAAAT
*
51101968 AATATATTAATATATATAAAAT
1 AATATATTAAAATATATAAAAT
*
51101990 CATAT
1 AATAT
51101995 CATATATCAT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.41
Consensus pattern (22 bp):
AATATATTAAAATATATAAAAT
Found at i:51102020 original size:32 final size:30
Alignment explanation
Indices: 51101946--51102020 Score: 89
Period size: 32 Copynumber: 2.4 Consensus size: 30
51101936 CGAAATTATA
51101946 AATATATTAAAATATATAATATAATATATT
1 AATATATTAAAATATATAATATAATATATT
*
51101976 AATATATATAAAATCATATCATAT-ATCATATAT
1 AATATAT-TAAAAT-ATATAATATAAT-ATAT-T
*
51102009 ATTATATTAAAA
1 AATATATTAAAA
51102021 GGTATACTTG
Statistics
Matches: 39, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
30 7 0.18
31 8 0.21
32 17 0.44
33 7 0.18
ACGTcount: A:0.55, C:0.04, G:0.00, T:0.41
Consensus pattern (30 bp):
AATATATTAAAATATATAATATAATATATT
Found at i:51110539 original size:106 final size:105
Alignment explanation
Indices: 51110385--51110601 Score: 416
Period size: 106 Copynumber: 2.1 Consensus size: 105
51110375 TAAATAATAA
51110385 ATATGTAATTATATAATAAAAAATATATTTTATGTATAACTTCTTTATATATAATATAAACATCA
1 ATATGTAATTATATAATAAAAAATATATTTTATGTATAACTTCTTTATATATAATATAAACATCA
*
51110450 ACTAATTTTGTTGATATAATTTTCTTTATATATAATATTT
66 ACTAAATTTGTTGATATAATTTTCTTTATATATAATATTT
51110490 ATATGTAATTATATAATAAAAATATATATTTTATGTATAACTTCTTTATATATAATATAAACATC
1 ATATGTAATTATATAATAAAAA-ATATATTTTATGTATAACTTCTTTATATATAATATAAACATC
51110555 AACTAAATTTGTTGATATAATTTTCTTTATATATAATATTT
65 AACTAAATTTGTTGATATAATTTTCTTTATATATAATATTT
51110596 ATATGT
1 ATATGT
51110602 CAAATATTTA
Statistics
Matches: 110, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
105 22 0.20
106 88 0.80
ACGTcount: A:0.42, C:0.06, G:0.04, T:0.48
Consensus pattern (105 bp):
ATATGTAATTATATAATAAAAAATATATTTTATGTATAACTTCTTTATATATAATATAAACATCA
ACTAAATTTGTTGATATAATTTTCTTTATATATAATATTT
Found at i:51111074 original size:6 final size:6
Alignment explanation
Indices: 51111065--51111098 Score: 50
Period size: 6 Copynumber: 5.7 Consensus size: 6
51111055 ACTTTTTGCT
* *
51111065 TTTTGA TTTTGA TTGTGA TTTTGA TTTTAA TTTT
1 TTTTGA TTTTGA TTTTGA TTTTGA TTTTGA TTTT
51111099 TGATGTTAAC
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
6 25 1.00
ACGTcount: A:0.18, C:0.00, G:0.15, T:0.68
Consensus pattern (6 bp):
TTTTGA
Found at i:51115167 original size:10 final size:10
Alignment explanation
Indices: 51115152--51115192 Score: 50
Period size: 10 Copynumber: 4.1 Consensus size: 10
51115142 TATATTTGTC
51115152 TTATTATATA
1 TTATTATATA
51115162 TTATTATATAA
1 TTATTATAT-A
51115173 TTATT-TATA
1 TTATTATATA
51115182 -TATATATATA
1 TTAT-TATATA
51115192 T
1 T
51115193 CTTTTCTTTT
Statistics
Matches: 27, Mismatches: 0, Indels: 7
0.79 0.00 0.21
Matches are distributed among these distances:
8 3 0.11
9 2 0.07
10 16 0.59
11 6 0.22
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (10 bp):
TTATTATATA
Found at i:51116028 original size:189 final size:191
Alignment explanation
Indices: 51115692--51116073 Score: 529
Period size: 189 Copynumber: 2.0 Consensus size: 191
51115682 TTTTAAATGA
* * * * *
51115692 TCTCGGAAATTAAGAAAAGATCGTGTCCTAACTTACTGGGCATGATCCCCTTTTTTTTAATCCGA
1 TCTCGGAAATTAACAAAAGATCATGTCCTAACTTACGGGGCATGATCCCC-TTTTTCTAAACCGA
*
51115757 GATAGCTAAATATCTTTTAAATAAGTAAATTTTTGGCATCCATTTCGCGCATCGGGAATTCAAGA
65 GATAACTAAATATCTTTTAAATAAGTAAATTTTTGGCATCCATTTCGCGCATCGGGAATTCAAGA
* * * *
51115822 CATTGTGTGCTAACTTACTGGATATAATTCTCTTTCTCGATTAACGTAAAATATGCCC-TTT
130 CATTGTGTCCTAACTTACGGGATATAATTCTCTTTCCCGATTAACGTAAAACATGCCCATTT
* *
51115883 TCTCGGGAATTAACAAAAGATCATGTTCTAACTTACGGGGCATGAT-CCC-TTTTCTAAACCTGA
1 TCTCGGAAATTAACAAAAGATCATGTCCTAACTTACGGGGCATGATCCCCTTTTTCTAAACC-GA
* * * ** *
51115946 GATAATTAAATATCTTTTTAAATAAGTAAGTTTTTGGCGTTTA-TTCGCGTATCGGGAATTCAAG
65 GATAACTAAATATC-TTTTAAATAAGTAAATTTTTGGCATCCATTTCGCGCATCGGGAATTCAAG
* *
51116010 ACATTGTGTCCTAACTTACGGGATATAATTTTCTTTCCCGATTAACGTGAAACATGCCCATTT
129 ACATTGTGTCCTAACTTACGGGATATAATTCTCTTTCCCGATTAACGTAAAACATGCCCATTT
51116073 T
1 T
51116074 TCTCAAAAAA
Statistics
Matches: 168, Mismatches: 20, Indels: 7
0.86 0.10 0.04
Matches are distributed among these distances:
188 9 0.05
189 87 0.52
190 31 0.18
191 41 0.24
ACGTcount: A:0.29, C:0.18, G:0.16, T:0.36
Consensus pattern (191 bp):
TCTCGGAAATTAACAAAAGATCATGTCCTAACTTACGGGGCATGATCCCCTTTTTCTAAACCGAG
ATAACTAAATATCTTTTAAATAAGTAAATTTTTGGCATCCATTTCGCGCATCGGGAATTCAAGAC
ATTGTGTCCTAACTTACGGGATATAATTCTCTTTCCCGATTAACGTAAAACATGCCCATTT
Found at i:51118587 original size:25 final size:25
Alignment explanation
Indices: 51118536--51118617 Score: 92
Period size: 25 Copynumber: 3.3 Consensus size: 25
51118526 AGCTCTTCCA
* * * *
51118536 AGCTGAATAATGGTAAACTCCTCCG
1 AGCTGAATAACGGTAAGCTCATACG
*
51118561 AGTTGAATAACGGTAAGCTCATACG
1 AGCTGAATAACGGTAAGCTCATACG
* * *
51118586 AGCTGAGTATCGGTAAGCTCATAAG
1 AGCTGAATAACGGTAAGCTCATACG
51118611 AGCTGAA
1 AGCTGAA
51118618 GTCGGTAACC
Statistics
Matches: 47, Mismatches: 10, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
25 47 1.00
ACGTcount: A:0.34, C:0.18, G:0.24, T:0.23
Consensus pattern (25 bp):
AGCTGAATAACGGTAAGCTCATACG
Found at i:51120261 original size:6 final size:6
Alignment explanation
Indices: 51120247--51120328 Score: 74
Period size: 6 Copynumber: 13.7 Consensus size: 6
51120237 TGAGGATAGG
* * * * *
51120247 ATCTTT ATCTGT ATCCGT ATCTGT TTCTGC ATCTGT ATCTGT AACTGT
1 ATCTGT ATCTGT ATCTGT ATCTGT ATCTGT ATCTGT ATCTGT ATCTGT
* * * * *
51120295 ATATGT ATTTAT ATCTAT AACTGT ATCTGT ATCT
1 ATCTGT ATCTGT ATCTGT ATCTGT ATCTGT ATCT
51120329 AAAATTTTCT
Statistics
Matches: 60, Mismatches: 16, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
6 60 1.00
ACGTcount: A:0.22, C:0.17, G:0.12, T:0.49
Consensus pattern (6 bp):
ATCTGT
Found at i:51124195 original size:105 final size:105
Alignment explanation
Indices: 51124037--51124234 Score: 236
Period size: 105 Copynumber: 1.9 Consensus size: 105
51124027 ACTATAGGTA
** *
51124037 ACAACATCAGGCTCAATGCCTCGCTTTATCATTGCGTCAACAATATCCTCAGCTTCAGAGACCAT
1 ACAACATCAGGCTCAATGCCTCGCTTTATCATCACGTCAACAATATCCTCAGCTTCAGAAACCAT
* *
51124102 CCCTTCCTTGCAATGCGCATCAACCAATGTATTATACGTG
66 CCCTTCCTTGCAAAGAGCATCAACCAATGTATTATACGTG
* * * * ** * * *
51124142 ACAACATTAGGCTCAATGCCTTGCTTTCTCATCATGTCAACGGTCT-CTACAGCTTTAGAAATCA
1 ACAACATCAGGCTCAATGCCTCGCTTTATCATCACGTCAACAATATCCT-CAGCTTCAGAAACCA
* *
51124206 TTCCTTCCTTGCAAAGAGCATCAATCAAT
65 TCCCTTCCTTGCAAAGAGCATCAACCAAT
51124235 AAAGTACATG
Statistics
Matches: 76, Mismatches: 16, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
104 2 0.03
105 74 0.97
ACGTcount: A:0.28, C:0.29, G:0.14, T:0.29
Consensus pattern (105 bp):
ACAACATCAGGCTCAATGCCTCGCTTTATCATCACGTCAACAATATCCTCAGCTTCAGAAACCAT
CCCTTCCTTGCAAAGAGCATCAACCAATGTATTATACGTG
Found at i:51125802 original size:23 final size:25
Alignment explanation
Indices: 51125776--51125824 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 25
51125766 AAATAATTTT
51125776 TGAAAAAT-GAAAAT-AAAAATATG
1 TGAAAAATAGAAAATAAAAAATATG
* *
51125799 TGAAAATTAGAGAATAAAAAATATG
1 TGAAAAATAGAAAATAAAAAATATG
51125824 T
1 T
51125825 TTTTATTATT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
23 7 0.32
24 5 0.23
25 10 0.45
ACGTcount: A:0.61, C:0.00, G:0.14, T:0.24
Consensus pattern (25 bp):
TGAAAAATAGAAAATAAAAAATATG
Found at i:51127710 original size:17 final size:17
Alignment explanation
Indices: 51127688--51127722 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
51127678 AACCTTCAAA
51127688 TGAAGGCTGGTTAAAGT
1 TGAAGGCTGGTTAAAGT
51127705 TGAAGGCTGGTTAAAGT
1 TGAAGGCTGGTTAAAGT
51127722 T
1 T
51127723 TAACGGTGAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.29, C:0.06, G:0.34, T:0.31
Consensus pattern (17 bp):
TGAAGGCTGGTTAAAGT
Found at i:51139063 original size:105 final size:104
Alignment explanation
Indices: 51138904--51139116 Score: 232
Period size: 105 Copynumber: 2.0 Consensus size: 104
51138894 ACCATTAACT
* *
51138904 AATGCACTATAGGTAACAACATCAGGCTCAATGCCTCGCTTTATCAATGCGTCAATGATATCCT-
1 AATGCACTATACGTAACAACATCAGGCTCAATGCCTCGCTTTATCAAT-CGTCAACGATAT-CTA
* * *
51138968 CAGCTTCAGAGACCATCCCTTCCTTGCAATGCGCATCAACC
64 CAGCTTCAGAAACCATCCCTTCCTTGCAAAGAGCATCAACC
* * * * * * *
51139009 AATGTACTATACGTGACAACATTAGGCTCAATGCCTTGCTTTCTC-ATCATGTCAACGGTCTCTA
1 AATGCACTATACGTAACAACATCAGGCTCAATGCCTCGCTTTATCAATC--GTCAACGATATCTA
* * * *
51139073 CAGCTTTAGAAATCATTCCTTCCTTGCAAAGAGCATCAATC
64 CAGCTTCAGAAACCATCCCTTCCTTGCAAAGAGCATCAACC
51139114 AAT
1 AAT
51139117 AGTTTGATAT
Statistics
Matches: 89, Mismatches: 16, Indels: 6
0.80 0.14 0.05
Matches are distributed among these distances:
103 1 0.01
104 4 0.04
105 84 0.94
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.29
Consensus pattern (104 bp):
AATGCACTATACGTAACAACATCAGGCTCAATGCCTCGCTTTATCAATCGTCAACGATATCTACA
GCTTCAGAAACCATCCCTTCCTTGCAAAGAGCATCAACC
Found at i:51139396 original size:8 final size:8
Alignment explanation
Indices: 51139385--51139430 Score: 56
Period size: 8 Copynumber: 5.6 Consensus size: 8
51139375 GCAGGGCAGC
51139385 AGAAAAGA
1 AGAAAAGA
51139393 AGAAAAGA
1 AGAAAAGA
*
51139401 AAAAAAGA
1 AGAAAAGA
* *
51139409 AAAAAAAA
1 AGAAAAGA
51139417 GAGAAAAGA
1 -AGAAAAGA
51139426 AGAAA
1 AGAAA
51139431 TGGACATATC
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
8 27 0.82
9 6 0.18
ACGTcount: A:0.80, C:0.00, G:0.20, T:0.00
Consensus pattern (8 bp):
AGAAAAGA
Found at i:51139403 original size:13 final size:13
Alignment explanation
Indices: 51139385--51139426 Score: 59
Period size: 13 Copynumber: 3.3 Consensus size: 13
51139375 GCAGGGCAGC
51139385 AGAAAAGAAGAAA
1 AGAAAAGAAGAAA
*
51139398 AGAAAAAAAGAAA
1 AGAAAAGAAGAAA
*
51139411 AAAAAAG-AGAAA
1 AGAAAAGAAGAAA
51139423 AGAA
1 AGAA
51139427 GAAATGGACA
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
12 8 0.32
13 17 0.68
ACGTcount: A:0.81, C:0.00, G:0.19, T:0.00
Consensus pattern (13 bp):
AGAAAAGAAGAAA
Found at i:51142931 original size:23 final size:25
Alignment explanation
Indices: 51142905--51142953 Score: 66
Period size: 24 Copynumber: 2.0 Consensus size: 25
51142895 AAATAATTTT
51142905 TGAAAAAT-GAAAATAAAAA-TATG
1 TGAAAAATAGAAAATAAAAAGTATG
* *
51142928 TGAAAACTAGAGAATAAAAAGTATG
1 TGAAAAATAGAAAATAAAAAGTATG
51142953 T
1 T
51142954 TTTTATTATT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
23 7 0.32
24 10 0.45
25 5 0.23
ACGTcount: A:0.59, C:0.02, G:0.16, T:0.22
Consensus pattern (25 bp):
TGAAAAATAGAAAATAAAAAGTATG
Found at i:51154375 original size:22 final size:23
Alignment explanation
Indices: 51154346--51154401 Score: 71
Period size: 22 Copynumber: 2.5 Consensus size: 23
51154336 AACGTTAGAA
*
51154346 AATATTATAAAA-A-ATATACAT
1 AATATTATAAAATACATATAAAT
51154367 ATATATTATAAAATACATATAAAT
1 A-ATATTATAAAATACATATAAAT
*
51154391 AATATAATAAA
1 AATATTATAAA
51154402 TGATGCAATA
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
21 1 0.03
22 11 0.37
23 10 0.33
24 8 0.27
ACGTcount: A:0.62, C:0.04, G:0.00, T:0.34
Consensus pattern (23 bp):
AATATTATAAAATACATATAAAT
Found at i:51154399 original size:18 final size:18
Alignment explanation
Indices: 51154361--51154399 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
51154351 TATAAAAAAT
* *
51154361 ATACATATATATTATAAA
1 ATACATATAAATAATAAA
*
51154379 ATACATATAAATAATATA
1 ATACATATAAATAATAAA
51154397 ATA
1 ATA
51154400 AATGATGCAA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.59, C:0.05, G:0.00, T:0.36
Consensus pattern (18 bp):
ATACATATAAATAATAAA
Found at i:51154972 original size:10 final size:10
Alignment explanation
Indices: 51154937--51154995 Score: 59
Period size: 10 Copynumber: 5.8 Consensus size: 10
51154927 TATTTTAGGT
*
51154937 GAAACAAAAA
1 GAAATAAAAA
51154947 GAAA-ATAAAA
1 GAAATA-AAAA
51154957 GAAAATAAAAA
1 G-AAATAAAAA
51154968 GAAATATAAAA
1 GAAATA-AAAA
*
51154979 -AAATAAACA
1 GAAATAAAAA
51154988 GAAATAAA
1 GAAATAAA
51154996 CGATGAACAC
Statistics
Matches: 43, Mismatches: 1, Indels: 10
0.80 0.02 0.19
Matches are distributed among these distances:
9 4 0.09
10 26 0.60
11 12 0.28
12 1 0.02
ACGTcount: A:0.78, C:0.03, G:0.08, T:0.10
Consensus pattern (10 bp):
GAAATAAAAA
Found at i:51156150 original size:132 final size:132
Alignment explanation
Indices: 51155955--51156708 Score: 1062
Period size: 132 Copynumber: 5.7 Consensus size: 132
51155945 TTTTCGATCG
* * * * *
51155955 ATTCCACTGCTGACCGGGGAAATAGAATTACTAGCTTCAATATACTCCACTGCAACCTCAGGGAG
1 ATTCCACTGCTGCCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGCAACCTCAGGGAG
* * *
51156020 GTAAAATCCACCATCTTTGATCTACTCCACTATTGCTTAGGGAGATAATATCTGTAATCTTCAAT
66 GTAAAATCCACCATCTTTGATCTGCTCCACTACTGCTTAGGGAGATAAAATCTGTAATCTTCAAT
51156085 CT
131 CT
* * *
51156087 ATTCCGCTGCAGCCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGCAACCTTAGGGAG
1 ATTCCACTGCTGCCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGCAACCTCAGGGAG
*
51156152 GTAAAATCCACCATCTTTGATCTGCCCCACTACTGCTTAGGGAGATAAAATCTGTAATCTTCAAT
66 GTAAAATCCACCATCTTTGATCTGCTCCACTACTGCTTAGGGAGATAAAATCTGTAATCTTCAAT
51156217 CT
131 CT
*
51156219 ATTCCACTGTTGCCCAGGG-AGATAGAATTACTGGCTTCAATGTACTCCACTGCAACCTCAGGGA
1 ATTCCACTGCTGCCCAGGGAAG-TAGAATTACTGGCTTCAATGTACTCCACTGCAACCTCAGGGA
* *
51156283 GGTAAAATCTACCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAAATCTGTAATCTTCAA
65 GGTAAAATCCACCATCTTTGATCTGCTCCACTACTGCTTAGGGAGATAAAATCTGTAATCTTCAA
51156348 TCT
130 TCT
* *
51156351 ATTCCACTGTTGCCCAAGG-AGATAGAATTACTGGCTTCAATGTACTCCACTGCAACCTCAGGGA
1 ATTCCACTGCTGCCCAGGGAAG-TAGAATTACTGGCTTCAATGTACTCCACTGCAACCTCAGGGA
* * * * ** * ** * *
51156415 GGTAAAATCTACCATCTTCGATCTGCTTCACTATTTATGTAGGAAGGCAAGATCTGAAATCTTCA
65 GGTAAAATCCACCATCTTTGATCTGCTCCACTACTGCT-TAGGGAGATAAAATCTGTAATCTTCA
51156480 ATCT
129 ATCT
* * * * **
51156484 ATTCCGCTGCTGCCTAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGTAACCACATTGAG
1 ATTCCACTGCTGCCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGCAACCTCAGGGAG
* * * * * * *
51156549 GTAAAATTCACCATCTTTGATCTACTCCACTACTGCTTGGGGAGACAAGATCTGAAATCTTTAAT
66 GTAAAATCCACCATCTTTGATCTGCTCCACTACTGCTTAGGGAGATAAAATCTGTAATCTTCAAT
51156614 CT
131 CT
* * *
51156616 ATTCCACTGCTGCCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGTAACCACATGGAG
1 ATTCCACTGCTGCCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGCAACCTCAGGGAG
*
51156681 GTAAAATTCACCATCTTTGATCTGCTCC
66 GTAAAATCCACCATCTTTGATCTGCTCC
51156709 GCTGTCTATG
Statistics
Matches: 566, Mismatches: 53, Indels: 6
0.91 0.08 0.01
Matches are distributed among these distances:
131 2 0.00
132 454 0.80
133 108 0.19
134 2 0.00
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.29
Consensus pattern (132 bp):
ATTCCACTGCTGCCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGCAACCTCAGGGAG
GTAAAATCCACCATCTTTGATCTGCTCCACTACTGCTTAGGGAGATAAAATCTGTAATCTTCAAT
CT
Found at i:51156372 original size:44 final size:44
Alignment explanation
Indices: 51155989--51156374 Score: 156
Period size: 44 Copynumber: 8.8 Consensus size: 44
51155979 GAATTACTAG
* ** * ****
51155989 CTTCAATATACTCCACTGCAACCTCAGGGAGGTAAAATCCACCAT
1 CTTCAATCTACTCCACTGCTGCC-CAGGGAGATAAAATCTGTAAT
** ** ** *
51156034 CTTTGATCTACTCCACTATTGCTTAGGGAGATAATATCTGTAAT
1 CTTCAATCTACTCCACTGCTGCCCAGGGAGATAAAATCTGTAAT
* * * * *
51156078 CTTCAATCTATTCCGCTGCAGCCCAGGGA-AGTAGAATTACTG---G
1 CTTCAATCTACTCCACTGCTGCCCAGGGAGA-TA-AAAT-CTGTAAT
* ** * * ****
51156121 CTTCAATGTACTCCACTGCAACCTTAGGGAGGTAAAATCCACCAT
1 CTTCAATCTACTCCACTGCTGCC-CAGGGAGATAAAATCTGTAAT
** * * * **
51156166 CTTTGATCTGCCCCACTACTGCTTAGGGAGATAAAATCTGTAAT
1 CTTCAATCTACTCCACTGCTGCCCAGGGAGATAAAATCTGTAAT
* * * *
51156210 CTTCAATCTATTCCACTGTTGCCCAGGGAGATAGAATTACTG---G
1 CTTCAATCTACTCCACTGCTGCCCAGGGAGATA-AAAT-CTGTAAT
* ** * ***
51156253 CTTCAATGTACTCCACTGCAACCTCAGGGAGGTAAAATCTACCAT
1 CTTCAATCTACTCCACTGCTGCC-CAGGGAGATAAAATCTGTAAT
* * * **
51156298 CTTCGATCTGCTCCACTACTGCTTAGGGAGATAAAATCTGTAAT
1 CTTCAATCTACTCCACTGCTGCCCAGGGAGATAAAATCTGTAAT
* * *
51156342 CTTCAATCTATTCCACTGTTGCCCAAGGAGATA
1 CTTCAATCTACTCCACTGCTGCCCAGGGAGATA
51156375 GAATTACTGG
Statistics
Matches: 236, Mismatches: 91, Indels: 29
0.66 0.26 0.08
Matches are distributed among these distances:
42 3 0.01
43 44 0.19
44 133 0.56
45 50 0.21
46 6 0.03
ACGTcount: A:0.28, C:0.25, G:0.17, T:0.29
Consensus pattern (44 bp):
CTTCAATCTACTCCACTGCTGCCCAGGGAGATAAAATCTGTAAT
Found at i:51156571 original size:397 final size:396
Alignment explanation
Indices: 51155976--51156708 Score: 1128
Period size: 397 Copynumber: 1.8 Consensus size: 396
51155966 GACCGGGGAA
*
51155976 ATAGAATTACTAGCTTCAATATACTCCACTGCAACCTCAGGGAGGTAAAATCCACCATCTTTGAT
1 ATAGAATTACTAGCTTCAATATACTCCACTGCAACCTCAGGGAGGTAAAATCCACCATCTTCGAT
* * * * *
51156041 CTACTCCACTATTGCTTAGGGAGATAATATCTGTAATCTTCAATCTATTCCGCTGCAGCCCAGGG
66 CTACTCCACTATTGATTAGGAAGACAAGATCTGAAATCTTCAATCTATTCCGCTGCAGCCCAGGG
**
51156106 AAGTAGAATTACTGGCTTCAATGTACTCCACTGCAACCTTAGGGAGGTAAAATCCACCATCTTTG
131 AAGTAGAATTACTGGCTTCAATGTACTCCACTGCAACCACAGGGAGGTAAAATCCACCATCTTTG
* * * *
51156171 ATCTGCCCCACTACTGCTTAGGGAGATAAAATCTGTAATCTTCAATCTATTCCACTGTTGCCCAG
196 ATCTACCCCACTACTGCTTAGGGAGACAAAATCTGAAATCTTCAATCTATTCCACTGCTGCCCAG
*
51156236 GG-AGATAGAATTACTGGCTTCAATGTACTCCACTGCAACCTCAGGGAGGTAAAA-TCTACCATC
261 GGAAG-TAGAATTACTGGCTTCAATGTACTCCACTGCAACCACAGGGAGGTAAAATTC-ACCATC
51156299 TTCGATCTGCTCCACTACTGCTTAGGGAGATAAAATCTGTAATCTTCAATCTATTCCACTGTTGC
324 TTCGATCTGCTCCACTACTGCTTAGGGAGATAAAATCTGTAATCTTCAATCTATTCCACTGTTGC
51156364 CCAAGGAG
389 CCAAGGAG
* * *
51156372 ATAGAATTACTGGCTTCAATGTACTCCACTGCAACCTCAGGGAGGTAAAATCTACCATCTTCGAT
1 ATAGAATTACTAGCTTCAATATACTCCACTGCAACCTCAGGGAGGTAAAATCCACCATCTTCGAT
* * * * * *
51156437 CTGCTTCACTATTTATGTAGGAAGGCAAGATCTGAAATCTTCAATCTATTCCGCTGCTGCCTAGG
66 CTACTCCACTATTGAT-TAGGAAGACAAGATCTGAAATCTTCAATCTATTCCGCTGCAGCCCAGG
* ** *
51156502 GAAGTAGAATTACTGGCTTCAATGTACTCCACTGTAACCACATTGAGGTAAAATTCACCATCTTT
130 GAAGTAGAATTACTGGCTTCAATGTACTCCACTGCAACCACAGGGAGGTAAAATCCACCATCTTT
* * * *
51156567 GATCTACTCCACTACTGCTTGGGGAGACAAGATCTGAAATCTTTAATCTATTCCACTGCTGCCCA
195 GATCTACCCCACTACTGCTTAGGGAGACAAAATCTGAAATCTTCAATCTATTCCACTGCTGCCCA
* *
51156632 GGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGTAACCACATGGAGGTAAAATTCACCATCT
260 GGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGCAACCACAGGGAGGTAAAATTCACCATCT
*
51156697 TTGATCTGCTCC
325 TCGATCTGCTCC
51156709 GCTGTCTATG
Statistics
Matches: 301, Mismatches: 33, Indels: 5
0.89 0.10 0.01
Matches are distributed among these distances:
396 73 0.24
397 224 0.74
398 4 0.01
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.29
Consensus pattern (396 bp):
ATAGAATTACTAGCTTCAATATACTCCACTGCAACCTCAGGGAGGTAAAATCCACCATCTTCGAT
CTACTCCACTATTGATTAGGAAGACAAGATCTGAAATCTTCAATCTATTCCGCTGCAGCCCAGGG
AAGTAGAATTACTGGCTTCAATGTACTCCACTGCAACCACAGGGAGGTAAAATCCACCATCTTTG
ATCTACCCCACTACTGCTTAGGGAGACAAAATCTGAAATCTTCAATCTATTCCACTGCTGCCCAG
GGAAGTAGAATTACTGGCTTCAATGTACTCCACTGCAACCACAGGGAGGTAAAATTCACCATCTT
CGATCTGCTCCACTACTGCTTAGGGAGATAAAATCTGTAATCTTCAATCTATTCCACTGTTGCCC
AAGGAG
Found at i:51156619 original size:265 final size:265
Alignment explanation
Indices: 51155955--51156745 Score: 1079
Period size: 265 Copynumber: 3.0 Consensus size: 265
51155945 TTTTCGATCG
* * * * *
51155955 ATTCCACTGCTGACCGGGGAAATAGAATTACTAGCTTCAATATACTCCACTGCAACCTCAGGGAG
1 ATTCCACTGCTGCCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGCAACCTCAGGGAG
* * *
51156020 GTAAAATCCACCATCTTTGATCTACTCCACTATTGCTTAGGGAGATAATATCTGTAATCTTCAAT
66 GTAAAATTCACCATCTTTGATCTACTCCACTACTGCTTAGGGAGATAAAATCTGTAATCTTCAAT
* * *
51156085 CTATTCCGCTGCAGCCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGCAACCTTAGGG
131 CTATTCCACTGCTGCCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGCAACCTCAGGG
* * * ** * ** * *
51156150 AGGTAAAATCCACCATCTTTGATCTGCCCCACTACTGCT-TAGGGAGATAAAATCTGTAATCTTC
196 AGGTAAAATCTACCATCTTTGATCTGCTCCACTATTTATGTAGGAAGGCAAGATCTGAAATCTTC
51156214 AATCT
261 AATCT
*
51156219 ATTCCACTGTTGCCCAGGG-AGATAGAATTACTGGCTTCAATGTACTCCACTGCAACCTCAGGGA
1 ATTCCACTGCTGCCCAGGGAAG-TAGAATTACTGGCTTCAATGTACTCCACTGCAACCTCAGGGA
* *
51156283 GGTAAAA-TCTACCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAAATCTGTAATCTTCA
65 GGTAAAATTC-ACCATCTTTGATCTACTCCACTACTGCTTAGGGAGATAAAATCTGTAATCTTCA
* *
51156347 ATCTATTCCACTGTTGCCCAAGG-AGATAGAATTACTGGCTTCAATGTACTCCACTGCAACCTCA
129 ATCTATTCCACTGCTGCCCAGGGAAG-TAGAATTACTGGCTTCAATGTACTCCACTGCAACCTCA
* *
51156411 GGGAGGTAAAATCTACCATCTTCGATCTGCTTCACTATTTATGTAGGAAGGCAAGATCTGAAATC
193 GGGAGGTAAAATCTACCATCTTTGATCTGCTCCACTATTTATGTAGGAAGGCAAGATCTGAAATC
51156476 TTCAATCT
258 TTCAATCT
* * * * **
51156484 ATTCCGCTGCTGCCTAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGTAACCACATTGAG
1 ATTCCACTGCTGCCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGCAACCTCAGGGAG
* * * * *
51156549 GTAAAATTCACCATCTTTGATCTACTCCACTACTGCTTGGGGAGACAAGATCTGAAATCTTTAAT
66 GTAAAATTCACCATCTTTGATCTACTCCACTACTGCTTAGGGAGATAAAATCTGTAATCTTCAAT
* * *
51156614 CTATTCCACTGCTGCCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGTAACCACATGG
131 CTATTCCACTGCTGCCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGCAACCTCAGGG
* * * * **
51156679 AGGTAAAAT-TCACCATCTTTGATCTGCTCCGCTGTCTATGCAGGAAGGCAAGATCTGCTATCTT
196 AGGTAAAATCT-ACCATCTTTGATCTGCTCCACTATTTATGTAGGAAGGCAAGATCTGAAATCTT
51156743 CAA
260 CAA
51156746 CCTGCTCCAC
Statistics
Matches: 464, Mismatches: 55, Indels: 15
0.87 0.10 0.03
Matches are distributed among these distances:
263 4 0.01
264 205 0.44
265 249 0.54
266 6 0.01
ACGTcount: A:0.28, C:0.25, G:0.18, T:0.29
Consensus pattern (265 bp):
ATTCCACTGCTGCCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGCAACCTCAGGGAG
GTAAAATTCACCATCTTTGATCTACTCCACTACTGCTTAGGGAGATAAAATCTGTAATCTTCAAT
CTATTCCACTGCTGCCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGCAACCTCAGGG
AGGTAAAATCTACCATCTTTGATCTGCTCCACTATTTATGTAGGAAGGCAAGATCTGAAATCTTC
AATCT
Found at i:51161982 original size:105 final size:105
Alignment explanation
Indices: 51161849--51162182 Score: 364
Period size: 105 Copynumber: 3.2 Consensus size: 105
51161839 ACCATTAACT
* * * * * **
51161849 AATGTATTATAGGTAACAACATTAGGCTCAATGCCTCGCTTTATCATTGCGTCAACAATATCCT-
1 AATGTACTATACGTGACAACATTAGGCTCAATGCCTTGCTTTCTCATCACGTCAACAATAT-CTA
* *
51161913 CAGCTTCAGAGACCATCCCTTCCTTGCAATGCGCATCAACC
65 CAGCTTCAGAAACCATCCCTTCCTTGCAAAGCGCATCAACC
* * ** *
51161954 AATGTACTATATGTGACAACATTAGGCTCAATGCCTTGCTTTCTCATCATGTCAACGGTCTCTAC
1 AATGTACTATACGTGACAACATTAGGCTCAATGCCTTGCTTTCTCATCACGTCAACAATATCTAC
* * * *
51162019 AGCTTTAGAAATCATTCCTTCCTTGCAAAGTGCATCAACC
66 AGCTTCAGAAACCATCCCTTCCTTGCAAAGCGCATCAACC
** * ** *
51162059 AATGTACTATACGTGACAACATCGGGCTCAATGCCTTGCTTTCTCATCATGTCAACGGTCTCTAC
1 AATGTACTATACGTGACAACATTAGGCTCAATGCCTTGCTTTCTCATCACGTCAACAATATCTAC
* * * * **
51162124 AGCTTTAGAAATCGTTCCTTCCTTGCAAAGAACATCAACC
66 AGCTTCAGAAACCATCCCTTCCTTGCAAAGCGCATCAACC
* *
51162164 AATGTATTATACATGACAA
1 AATGTACTATACGTGACAA
51162183 TATGAAGTGA
Statistics
Matches: 203, Mismatches: 25, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
104 2 0.01
105 201 0.99
ACGTcount: A:0.29, C:0.26, G:0.14, T:0.30
Consensus pattern (105 bp):
AATGTACTATACGTGACAACATTAGGCTCAATGCCTTGCTTTCTCATCACGTCAACAATATCTAC
AGCTTCAGAAACCATCCCTTCCTTGCAAAGCGCATCAACC
Found at i:51166937 original size:30 final size:30
Alignment explanation
Indices: 51166901--51167289 Score: 540
Period size: 30 Copynumber: 13.1 Consensus size: 30
51166891 TGTATTTAAA
* *
51166901 ATTTTAAAAATAAAAAAATATATGTAATGG
1 ATTTTAAAAATAAAAAAATATATGTAGTGT
51166931 ATTTTAAAAATAAAAAAA-ATACTTGTAGTGT
1 ATTTTAAAAATAAAAAAATATA--TGTAGTGT
* * * *
51166962 ATTTT-AATATATATATATATATGTAGTGT
1 ATTTTAAAAATAAAAAAATATATGTAGTGT
51166991 ATTTTAAAAAT-AAAAAATATATGTAGTGT
1 ATTTTAAAAATAAAAAAATATATGTAGTGT
* * *
51167020 ATTCTAGAAATAAAAAAATATATGTAGTCT
1 ATTTTAAAAATAAAAAAATATATGTAGTGT
* * * * *
51167050 ATTTTAATATATATATATATATATGAAGTGT
1 ATTTTAA-AAATAAAAAAATATATGTAGTGT
*
51167081 ATTTTAAAAGTAAAAAAATATATGTAGTGT
1 ATTTTAAAAATAAAAAAATATATGTAGTGT
51167111 ATTTTAAAAATAAAAAAATATATGTAGTGT
1 ATTTTAAAAATAAAAAAATATATGTAGTGT
51167141 ATTTTAAAAAT-AAAAAATATATGTAGTGT
1 ATTTTAAAAATAAAAAAATATATGTAGTGT
51167170 ATTTTAAAAAT-AAAAAATATATGTAGTGT
1 ATTTTAAAAATAAAAAAATATATGTAGTGT
51167199 ATTTTAAAAAT--AAAAATATATGTAGTGT
1 ATTTTAAAAATAAAAAAATATATGTAGTGT
*
51167227 ATTTTAAAAATAAACAAATATATGTAGTGT
1 ATTTTAAAAATAAAAAAATATATGTAGTGT
* *
51167257 ATTGTAAAAATAAAAAAATATATGTAGTAT
1 ATTTTAAAAATAAAAAAATATATGTAGTGT
51167287 ATT
1 ATT
51167290 CGGCGTATTC
Statistics
Matches: 319, Mismatches: 32, Indels: 16
0.87 0.09 0.04
Matches are distributed among these distances:
28 28 0.09
29 98 0.31
30 155 0.49
31 38 0.12
ACGTcount: A:0.50, C:0.01, G:0.10, T:0.39
Consensus pattern (30 bp):
ATTTTAAAAATAAAAAAATATATGTAGTGT
Found at i:51166989 original size:29 final size:28
Alignment explanation
Indices: 51166908--51167289 Score: 386
Period size: 29 Copynumber: 12.9 Consensus size: 28
51166898 AAAATTTTAA
* * *
51166908 AAATAAAAAAATATATGTAATGGATTTT
1 AAATATAAAAATATATGTAGTGTATTTT
* *
51166936 AAAAATAAAAAAAATACTTGTAGTGTATTTT
1 AAATAT-AAAAATATA--TGTAGTGTATTTT
* *
51166967 AATATATATATATATATGTAGTGTATTTT
1 AA-ATATAAAAATATATGTAGTGTATTTT
* *
51166996 AAAAATAAAAAATATATGTAGTGTATTCTAG
1 AAATAT-AAAAATATATGTAGTGTATT-T-T
* *
51167027 AAATAAAAAAATATATGTAGTCTATTTT
1 AAATATAAAAATATATGTAGTGTATTTT
* *
51167055 AATATATATATATATATATGAAGTGTATTTT
1 AA-ATATA-A-AAATATATGTAGTGTATTTT
*
51167086 AAAAGTAAAAAAATATATGTAGTGTATTTT
1 -AAA-TATAAAAATATATGTAGTGTATTTT
*
51167116 AAAAATAAAAAAATATATGTAGTGTATTTT
1 --AAATATAAAAATATATGTAGTGTATTTT
*
51167146 AAAAATAAAAAATATATGTAGTGTATTTT
1 AAATAT-AAAAATATATGTAGTGTATTTT
*
51167175 AAAAATAAAAAATATATGTAGTGTATTTT
1 AAATAT-AAAAATATATGTAGTGTATTTT
*
51167204 AAAAATAAAAATATATGTAGTGTATTTT
1 AAATATAAAAATATATGTAGTGTATTTT
* *
51167232 AAAAATAAACAAATATATGTAGTGTATTGTAA
1 AAATAT-AA-AAATATATGTAGTGTATT-T-T
* *
51167264 AAATAAAAAAATATATGTAGTATATT
1 AAATATAAAAATATATGTAGTGTATT
51167290 CGGCGTATTC
Statistics
Matches: 306, Mismatches: 30, Indels: 34
0.83 0.08 0.09
Matches are distributed among these distances:
28 41 0.13
29 105 0.34
30 99 0.32
31 49 0.16
32 12 0.04
ACGTcount: A:0.50, C:0.01, G:0.10, T:0.38
Consensus pattern (28 bp):
AAATATAAAAATATATGTAGTGTATTTT
Found at i:51167053 original size:88 final size:90
Alignment explanation
Indices: 51166901--51167289 Score: 558
Period size: 88 Copynumber: 4.4 Consensus size: 90
51166891 TGTATTTAAA
* *
51166901 ATTTTAAAAATAAAAAAATATATGTAATGGATTTTAAAAATAAAAAAA-ATACTTGTAGTGTATT
1 ATTTTAAAAATAAAAAAATATATGTAGTGTATTTTAAAAATAAAAAAATATA--TGTAGTGTATT
*
51166965 TT-AATATATATATATATATGTAGTGT
64 TTAAATATATATAAATATATGTAGTGT
* * *
51166991 ATTTTAAAAAT-AAAAAATATATGTAGTGTATTCTAGAAATAAAAAAATATATGTAGTCTATTTT
1 ATTTTAAAAATAAAAAAATATATGTAGTGTATTTTAAAAATAAAAAAATATATGTAGTGTATTTT
* *
51167055 AATATATATATATATATATGAAGTGT
66 AA-ATATATATAAATATATGTAGTGT
*
51167081 ATTTTAAAAGTAAAAAAATATATGTAGTGTATTTTAAAAATAAAAAAATATATGTAGTGTATTTT
1 ATTTTAAAAATAAAAAAATATATGTAGTGTATTTTAAAAATAAAAAAATATATGTAGTGTATTTT
* *
51167146 AAAAATA-AAAAATATATGTAGTGT
66 AAATATATATAAATATATGTAGTGT
51167170 ATTTTAAAAAT-AAAAAATATATGTAGTGTATTTTAAAAAT--AAAAATATATGTAGTGTATTTT
1 ATTTTAAAAATAAAAAAATATATGTAGTGTATTTTAAAAATAAAAAAATATATGTAGTGTATTTT
* * *
51167232 AAAAATAAACAAATATATGTAGTGT
66 AAATATATATAAATATATGTAGTGT
* *
51167257 ATTGTAAAAATAAAAAAATATATGTAGTATATT
1 ATTTTAAAAATAAAAAAATATATGTAGTGTATT
51167290 CGGCGTATTC
Statistics
Matches: 275, Mismatches: 18, Indels: 14
0.90 0.06 0.05
Matches are distributed among these distances:
86 29 0.11
87 26 0.09
88 61 0.22
89 57 0.21
90 50 0.18
91 52 0.19
ACGTcount: A:0.50, C:0.01, G:0.10, T:0.39
Consensus pattern (90 bp):
ATTTTAAAAATAAAAAAATATATGTAGTGTATTTTAAAAATAAAAAAATATATGTAGTGTATTTT
AAATATATATAAATATATGTAGTGT
Found at i:51167748 original size:21 final size:21
Alignment explanation
Indices: 51167696--51167750 Score: 83
Period size: 21 Copynumber: 2.6 Consensus size: 21
51167686 ACCATTGTTT
* *
51167696 CTAATCTCACAGCTACAGTAT
1 CTAATCTCACCGCTACAGTAA
*
51167717 CCAATCTCACCGCTACAGTAA
1 CTAATCTCACCGCTACAGTAA
51167738 CTAATCTCACCGC
1 CTAATCTCACCGC
51167751 CACCGCTGTT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.31, C:0.36, G:0.09, T:0.24
Consensus pattern (21 bp):
CTAATCTCACCGCTACAGTAA
Found at i:51169026 original size:36 final size:36
Alignment explanation
Indices: 51168948--51169026 Score: 90
Period size: 36 Copynumber: 2.2 Consensus size: 36
51168938 TAAAGGAAAC
*
51168948 TAAATATTTCTAATAATCATTTTCACCAAATATTTAA
1 TAAA-ATTTCTAATAATCATTTTCACCAAATACTTAA
* *
51168985 TAAAATTTCTAATAAAT-ATTTTTACTAAATGACTTAA
1 TAAAATTTCTAAT-AATCATTTTCACCAAAT-ACTTAA
51169022 -AAAAT
1 TAAAAT
51169027 ATAAATAAAA
Statistics
Matches: 37, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
36 25 0.68
37 12 0.32
ACGTcount: A:0.47, C:0.10, G:0.01, T:0.42
Consensus pattern (36 bp):
TAAAATTTCTAATAATCATTTTCACCAAATACTTAA
Found at i:51170311 original size:105 final size:105
Alignment explanation
Indices: 51170152--51170380 Score: 253
Period size: 105 Copynumber: 2.2 Consensus size: 105
51170142 ACCATTAACT
* * * **
51170152 AATGCACTATAGGTAACAACATTAGGCTCAATGCCTCGCTTTATCATTGCGTCAACAATATCCT-
1 AATGTACTATACGTGACAACATTAGGCTCAATGCCTCGCTTTATCATCACGTCAACAATAT-CTA
* * *
51170216 CAGCTTCAGAGACCATCCCTTCCTTGCAATGCGCATCAACC
65 CAGCTTCAGAAACCATCCCTTCCTTGCAAAGAGCATCAACC
* * * *** *
51170257 AATGTACTATACGTGACAACATTAGGCTCAATGCCTTGCTTTCTCATCATGTCAATGGTCTCTAC
1 AATGTACTATACGTGACAACATTAGGCTCAATGCCTCGCTTTATCATCACGTCAACAATATCTAC
* *** *
51170322 AGCTTTAGAAATTGTTCCTTCCTTGCAAAGAGCATCAACC
66 AGCTTCAGAAACCATCCCTTCCTTGCAAAGAGCATCAACC
*
51170362 AATGTATTATACGTGACAA
1 AATGTACTATACGTGACAA
51170381 TATCAAGTGA
Statistics
Matches: 102, Mismatches: 21, Indels: 2
0.82 0.17 0.02
Matches are distributed among these distances:
104 2 0.02
105 100 0.98
ACGTcount: A:0.29, C:0.26, G:0.15, T:0.30
Consensus pattern (105 bp):
AATGTACTATACGTGACAACATTAGGCTCAATGCCTCGCTTTATCATCACGTCAACAATATCTAC
AGCTTCAGAAACCATCCCTTCCTTGCAAAGAGCATCAACC
Found at i:51178387 original size:6 final size:6
Alignment explanation
Indices: 51178369--51178408 Score: 71
Period size: 6 Copynumber: 6.5 Consensus size: 6
51178359 GAAACAGGGG
51178369 AAAGGA GAAAGGA AAAGGA AAAGGA AAAGGA AAAGGA AAA
1 AAAGGA -AAAGGA AAAGGA AAAGGA AAAGGA AAAGGA AAA
51178409 ATTAGGGTTT
Statistics
Matches: 33, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
6 27 0.82
7 6 0.18
ACGTcount: A:0.68, C:0.00, G:0.33, T:0.00
Consensus pattern (6 bp):
AAAGGA
Found at i:51179957 original size:19 final size:19
Alignment explanation
Indices: 51179929--51179966 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
51179919 ATTGCATATG
*
51179929 AATTGAAATGAGATTGAAA
1 AATTGAAATGAAATTGAAA
*
51179948 AATTGCAATGAAATTGAAA
1 AATTGAAATGAAATTGAAA
51179967 TAGTGAAATA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.53, C:0.03, G:0.18, T:0.26
Consensus pattern (19 bp):
AATTGAAATGAAATTGAAA
Found at i:51180537 original size:18 final size:17
Alignment explanation
Indices: 51180498--51180654 Score: 147
Period size: 18 Copynumber: 8.8 Consensus size: 17
51180488 TTTTTAAAAA
51180498 TCGTGTTTCAAAAATTT
1 TCGTGTTTCAAAAATTT
51180515 TCGTGTTTCAAAAATTT
1 TCGTGTTTCAAAAATTT
*
51180532 TGCGTGTTTTCAAAAAATTC
1 T-CGTG-TTTC-AAAAATTT
51180552 TCGTGTTT-AAAAATTT
1 TCGTGTTTCAAAAATTT
*
51180568 TCGCAT-TTTCAAAAAATT
1 TCG--TGTTTCAAAAATTT
*
51180586 TCAGTGCTTCAAAAATTT
1 TC-GTGTTTCAAAAATTT
* * *
51180604 TCTTATTTTCAAAAAATTA
1 TCGT-GTTTC-AAAAATTT
51180623 TCGTGTTTCAAAAATTT
1 TCGTGTTTCAAAAATTT
* *
51180640 CCATGTTTTCAAAAA
1 TCGTG-TTTCAAAAA
51180655 AAATTATTAT
Statistics
Matches: 115, Mismatches: 14, Indels: 21
0.77 0.09 0.14
Matches are distributed among these distances:
16 10 0.09
17 33 0.29
18 45 0.39
19 19 0.17
20 8 0.07
ACGTcount: A:0.34, C:0.13, G:0.10, T:0.43
Consensus pattern (17 bp):
TCGTGTTTCAAAAATTT
Found at i:51180545 original size:36 final size:35
Alignment explanation
Indices: 51180498--51180709 Score: 178
Period size: 36 Copynumber: 5.8 Consensus size: 35
51180488 TTTTTAAAAA
51180498 TCGTG-TTTCAAAAATTTTCGTGTTTCAAAAATTT
1 TCGTGTTTTCAAAAATTTTCGTGTTTCAAAAATTT
*
51180532 TGCGTGTTTTCAAAAAATTCTCGTGTTT-AAAAATTT
1 T-CGTGTTTTC-AAAAATTTTCGTGTTTCAAAAATTT
** * *
51180568 TCGCATTTTCAAAAAATTTCAGTGCTTCAAAAATTT
1 TCGTGTTTTCAAAAATTTTC-GTGTTTCAAAAATTT
* * *
51180604 TCTTATTTTCAAAAAATTATCGTGTTTCAAAAATTT
1 TCGTGTTTTC-AAAAATTTTCGTGTTTCAAAAATTT
* * * *
51180640 CCATGTTTTCAAAAAAAATTATTATGGTGTTTC-AAAATTC
1 TCGTGTTTTC---AAAAA-T-TT-TCGTGTTTCAAAAATTT
* *
51180680 TCGTGTTTTAAAAAAATTCTCGTGTTTCAA
1 TCGTGTTTT-CAAAAATTTTCGTGTTTCAA
51180710 TCGGATCACG
Statistics
Matches: 143, Mismatches: 22, Indels: 24
0.76 0.12 0.13
Matches are distributed among these distances:
34 9 0.06
35 24 0.17
36 52 0.36
37 24 0.17
38 11 0.08
39 1 0.01
40 14 0.10
41 8 0.06
ACGTcount: A:0.33, C:0.13, G:0.10, T:0.43
Consensus pattern (35 bp):
TCGTGTTTTCAAAAATTTTCGTGTTTCAAAAATTT
Found at i:51180688 original size:40 final size:40
Alignment explanation
Indices: 51180619--51180695 Score: 104
Period size: 41 Copynumber: 1.9 Consensus size: 40
51180609 TTTTCAAAAA
51180619 ATTATCGTGTTTCAAAAATTTCCATGTTTTCAAAAAAAATT
1 ATTATCGTGTTTCAAAAATTTCCATGTTTT-AAAAAAAATT
* *
51180660 ATTATGGTGTTTC-AAAA-TTCTCGTGTTTTAAAAAAA
1 ATTATCGTGTTTCAAAAATTTC-CATGTTTTAAAAAAA
51180696 TTCTCGTGTT
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
39 10 0.30
40 11 0.33
41 12 0.36
ACGTcount: A:0.38, C:0.10, G:0.10, T:0.42
Consensus pattern (40 bp):
ATTATCGTGTTTCAAAAATTTCCATGTTTTAAAAAAAATT
Found at i:51181827 original size:21 final size:19
Alignment explanation
Indices: 51181778--51181828 Score: 50
Period size: 21 Copynumber: 2.5 Consensus size: 19
51181768 TGTAATAACT
*
51181778 ATAAAGAAAGAAAGAGAAG
1 ATAAAGAAAAAAAGAGAAG
51181797 A-AAAGGGAAAAAAATGAGAAG
1 ATAAA--GAAAAAAA-GAGAAG
51181818 ATTAAAGAAAA
1 A-TAAAGAAAA
51181829 GAAGTAATGT
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
18 3 0.12
19 1 0.04
20 7 0.27
21 12 0.46
23 3 0.12
ACGTcount: A:0.69, C:0.00, G:0.24, T:0.08
Consensus pattern (19 bp):
ATAAAGAAAAAAAGAGAAG
Found at i:51183095 original size:105 final size:105
Alignment explanation
Indices: 51182972--51183295 Score: 371
Period size: 105 Copynumber: 3.1 Consensus size: 105
51182962 ATTATAGGTA
* * ** * *
51182972 ACAACATTAGGCTCAATGCCTCGCTTTATCATTGTGTCAACAATATC-ATTAGCTTCAGAGACCA
1 ACAACATTAGGCTCAATGCCTTGCTTTCTCATCATGTCAACAATATCTA-CAGCTTCAGAAACCA
* * *
51183036 TCCCTTGCTTGCAATGCGCATCAACCAATGTACTATATGTG
65 TCCCTTCCTTGCAAAGCGCATCAACCAATGTACTATACGTG
** * * *
51183077 ACAACATTAGGCTCAATGCCTTGCTTTCTCATCATGTCAACGGTCTCTACAGCTTTAGAAATCAT
1 ACAACATTAGGCTCAATGCCTTGCTTTCTCATCATGTCAACAATATCTACAGCTTCAGAAACCAT
* *
51183142 TCCTTCCTTGCAAAGTGCATCAACCAATGTACTATACGTG
66 CCCTTCCTTGCAAAGCGCATCAACCAATGTACTATACGTG
** ** * * * *
51183182 ACAACATCGGGCTCAATGCCTTGCTTTCTCATCATGTCAACGGTCTCTACAGCTTTAGAAATCGT
1 ACAACATTAGGCTCAATGCCTTGCTTTCTCATCATGTCAACAATATCTACAGCTTCAGAAACCAT
* ** * *
51183247 TCCTTCCTTGCAAAGAACATCAACCAATGTATTATACATG
66 CCCTTCCTTGCAAAGCGCATCAACCAATGTACTATACGTG
51183287 ACAACATTA
1 ACAACATTA
51183296 AGTGAAATAT
Statistics
Matches: 193, Mismatches: 25, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
105 192 0.99
106 1 0.01
ACGTcount: A:0.29, C:0.26, G:0.14, T:0.31
Consensus pattern (105 bp):
ACAACATTAGGCTCAATGCCTTGCTTTCTCATCATGTCAACAATATCTACAGCTTCAGAAACCAT
CCCTTCCTTGCAAAGCGCATCAACCAATGTACTATACGTG
Found at i:51184773 original size:18 final size:18
Alignment explanation
Indices: 51184750--51184785 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
51184740 ACTTATTTTT
51184750 ATAATTAAGTTTTAAATA
1 ATAATTAAGTTTTAAATA
51184768 ATAATTAAGTTTTAAATA
1 ATAATTAAGTTTTAAATA
51184786 TGATTAAATG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.50, C:0.00, G:0.06, T:0.44
Consensus pattern (18 bp):
ATAATTAAGTTTTAAATA
Found at i:51185070 original size:21 final size:18
Alignment explanation
Indices: 51185027--51185063 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
51185017 AATACTTTTG
51185027 AATTTTTTTTATGAACAT
1 AATTTTTTTTATGAACAT
51185045 AATTTTTTTTATGAACAT
1 AATTTTTTTTATGAACAT
51185063 A
1 A
51185064 CTAATTTGTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.35, C:0.05, G:0.05, T:0.54
Consensus pattern (18 bp):
AATTTTTTTTATGAACAT
Found at i:51189526 original size:20 final size:20
Alignment explanation
Indices: 51189497--51189537 Score: 73
Period size: 20 Copynumber: 2.0 Consensus size: 20
51189487 TATGCATGTG
51189497 TTAGTGTTTCTCGTATTAAT
1 TTAGTGTTTCTCGTATTAAT
*
51189517 TTAGTTTTTCTCGTATTAAT
1 TTAGTGTTTCTCGTATTAAT
51189537 T
1 T
51189538 ATTCTTGTGT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.20, C:0.10, G:0.12, T:0.59
Consensus pattern (20 bp):
TTAGTGTTTCTCGTATTAAT
Found at i:51191537 original size:3 final size:3
Alignment explanation
Indices: 51191529--51191609 Score: 128
Period size: 3 Copynumber: 27.3 Consensus size: 3
51191519 TGTATAGGTG
51191529 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
* * *
51191577 TAA TAA TAA TAA T-A CAA TAA CAA TAA TAG TAA T
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T
51191610 GCAATATAAC
Statistics
Matches: 71, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
2 1 0.01
3 70 0.99
ACGTcount: A:0.64, C:0.02, G:0.01, T:0.32
Consensus pattern (3 bp):
TAA
Found at i:51193115 original size:85 final size:85
Alignment explanation
Indices: 51193013--51193176 Score: 267
Period size: 85 Copynumber: 1.9 Consensus size: 85
51193003 AGATAAATCT
* *
51193013 GATGCGATCTGCTCTACTGCAACTTCAGAGAGATGAGATCTATGGTTTTAATCCGCTCCACTGCA
1 GATGCGATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTATGGTTTTAACCCGCTCCACTGCA
51193078 A-TTTCAGGGAGATAGGATTG
66 ACTTT-AGGGAGATAGGATTG
* * *
51193098 GATGTGATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTGGTTTTAACCCGCTCTACTGCA
1 GATGCGATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTATGGTTTTAACCCGCTCCACTGCA
51193163 ACTTTAGGGAGATA
66 ACTTTAGGGAGATA
51193177 AGACTTGTAT
Statistics
Matches: 73, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
85 70 0.96
86 3 0.04
ACGTcount: A:0.26, C:0.20, G:0.24, T:0.30
Consensus pattern (85 bp):
GATGCGATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTATGGTTTTAACCCGCTCCACTGCA
ACTTTAGGGAGATAGGATTG
Found at i:51193162 original size:44 final size:43
Alignment explanation
Indices: 51193023--51193183 Score: 175
Period size: 44 Copynumber: 3.8 Consensus size: 43
51193013 GATGCGATCT
*
51193023 GCTCTACTGCAACTTCAGAGAGATGAGATCTATGGTTTTAATCC
1 GCTCTACTGCAACTTCAGAGAGATAAGATCT-TGGTTTTAATCC
* * * * * * * *
51193067 GCTCCACTGCAATTTCAGGGAGATAGGA--TTGGATGTGATCT
1 GCTCTACTGCAACTTCAGAGAGATAAGATCTTGGTTTTAATCC
*
51193108 GCTCTACTGCAACTTCAGAGAGATAAGATCTGTGGTTTTAACCC
1 GCTCTACTGCAACTTCAGAGAGATAAGATCT-TGGTTTTAATCC
* *
51193152 GCTCTACTGCAACTTTAGGGAGATAAGA-CTTG
1 GCTCTACTGCAACTTCAGAGAGATAAGATCTTG
51193184 TATCTTCGAT
Statistics
Matches: 94, Mismatches: 20, Indels: 8
0.77 0.16 0.07
Matches are distributed among these distances:
41 32 0.34
42 3 0.03
43 3 0.03
44 56 0.60
ACGTcount: A:0.27, C:0.20, G:0.24, T:0.30
Consensus pattern (43 bp):
GCTCTACTGCAACTTCAGAGAGATAAGATCTTGGTTTTAATCC
Found at i:51195260 original size:2 final size:2
Alignment explanation
Indices: 51195255--51195282 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
51195245 AAATTAATGT
51195255 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
51195283 AAATAAAAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:51195386 original size:11 final size:11
Alignment explanation
Indices: 51195370--51195394 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
51195360 ATGTGTGAGT
51195370 TTTTTTATAAA
1 TTTTTTATAAA
51195381 TTTTTTATAAA
1 TTTTTTATAAA
51195392 TTT
1 TTT
51195395 AAAAATTTAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (11 bp):
TTTTTTATAAA
Found at i:51195516 original size:6 final size:6
Alignment explanation
Indices: 51195501--51195559 Score: 50
Period size: 6 Copynumber: 9.8 Consensus size: 6
51195491 TAAGTGAAGG
* * *
51195501 AATT-A AATTAA AATTAA AATTAA AATTTATT ATTTAA AA-TAA TATTAA
1 AATTAA AATTAA AATTAA AATTAA AA-TTA-A AATTAA AATTAA AATTAA
*
51195549 AAATAA AATTA
1 AATTAA AATTA
51195560 CTTTATTTTA
Statistics
Matches: 42, Mismatches: 8, Indels: 7
0.74 0.14 0.12
Matches are distributed among these distances:
5 8 0.19
6 27 0.64
7 6 0.14
8 1 0.02
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (6 bp):
AATTAA
Found at i:51203818 original size:105 final size:105
Alignment explanation
Indices: 51203683--51203911 Score: 289
Period size: 105 Copynumber: 2.2 Consensus size: 105
51203673 ACCATTAACT
* * * *
51203683 AATGTATTATAGGTAACAACATTAGGCTCAATGCCTCGCTTTATCATTGCGTCAACAATATCCT-
1 AATGTACTATACGTGACAACATCAGGCTCAATGCCTCGCTTTATCATTGCGTCAACAATAT-CTA
* * *
51203747 CAGCTTCAGAGACCATCCCTTCCTTGCAATGCGCATCAACC
65 CAGCTTCAGAAACCATCCCTTCCTTGCAAAGAGCATCAACC
* * * * ** *
51203788 AATGTACTATACGTGACAACATCGGGCTCAATGCCTTGCTTTCTCATTGTGTCAACGGTCTCTAC
1 AATGTACTATACGTGACAACATCAGGCTCAATGCCTCGCTTTATCATTGCGTCAACAATATCTAC
* * *
51203853 AGCTTTAGAAATCATTCCTTCCTTGCAAAGAGCATCAACC
66 AGCTTCAGAAACCATCCCTTCCTTGCAAAGAGCATCAACC
51203893 AATGTACTATACGTGACAA
1 AATGTACTATACGTGACAA
51203912 TATTAAGCGA
Statistics
Matches: 106, Mismatches: 17, Indels: 2
0.85 0.14 0.02
Matches are distributed among these distances:
104 2 0.02
105 104 0.98
ACGTcount: A:0.29, C:0.27, G:0.15, T:0.29
Consensus pattern (105 bp):
AATGTACTATACGTGACAACATCAGGCTCAATGCCTCGCTTTATCATTGCGTCAACAATATCTAC
AGCTTCAGAAACCATCCCTTCCTTGCAAAGAGCATCAACC
Found at i:51205636 original size:3 final size:3
Alignment explanation
Indices: 51205630--51205682 Score: 106
Period size: 3 Copynumber: 17.7 Consensus size: 3
51205620 ATAACAGTAG
51205630 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
51205678 TAA TA
1 TAA TA
51205683 GTAGTAGAAA
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 50 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:51208098 original size:65 final size:65
Alignment explanation
Indices: 51208004--51208134 Score: 253
Period size: 65 Copynumber: 2.0 Consensus size: 65
51207994 TTAAGATCGG
*
51208004 TAGTGCCTCGTATCCTGTCCCGGTGTCGGACACGGGTAAGGGACATCTAGTATACTTAAGGCCCC
1 TAGTGCCTCGTATCCTGTCCCGGCGTCGGACACGGGTAAGGGACATCTAGTATACTTAAGGCCCC
51208069 TAGTGCCTCGTATCCTGTCCCGGCGTCGGACACGGGTAAGGGACATCTAGTATACTTAAGGCCCC
1 TAGTGCCTCGTATCCTGTCCCGGCGTCGGACACGGGTAAGGGACATCTAGTATACTTAAGGCCCC
51208134 T
1 T
51208135 TACATTGTAC
Statistics
Matches: 65, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
65 65 1.00
ACGTcount: A:0.20, C:0.28, G:0.27, T:0.24
Consensus pattern (65 bp):
TAGTGCCTCGTATCCTGTCCCGGCGTCGGACACGGGTAAGGGACATCTAGTATACTTAAGGCCCC
Found at i:51210284 original size:21 final size:20
Alignment explanation
Indices: 51210245--51210282 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
51210235 TAACGACGTA
51210245 AATTTTATATTAGATTTTAC
1 AATTTTATATTAGATTTTAC
51210265 AATTTT-TATGTAGATTTT
1 AATTTTATAT-TAGATTTT
51210283 TAAAAATAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
19 3 0.18
20 14 0.82
ACGTcount: A:0.32, C:0.03, G:0.08, T:0.58
Consensus pattern (20 bp):
AATTTTATATTAGATTTTAC
Found at i:51210461 original size:7 final size:7
Alignment explanation
Indices: 51210449--51210484 Score: 54
Period size: 7 Copynumber: 5.1 Consensus size: 7
51210439 CGCTAGTTGA
51210449 TTGGTAT
1 TTGGTAT
51210456 TTGGTAT
1 TTGGTAT
*
51210463 TTAGTAT
1 TTGGTAT
*
51210470 TTAGTAT
1 TTGGTAT
51210477 TTGGTAT
1 TTGGTAT
51210484 T
1 T
51210485 ATGTACATAA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
7 27 1.00
ACGTcount: A:0.19, C:0.00, G:0.22, T:0.58
Consensus pattern (7 bp):
TTGGTAT
Found at i:51211716 original size:15 final size:15
Alignment explanation
Indices: 51211696--51211795 Score: 71
Period size: 15 Copynumber: 6.7 Consensus size: 15
51211686 ACCCTAACCC
51211696 TAAACCCTAAAACTA
1 TAAACCCTAAAACTA
* **
51211711 TAAACCTTAAAAACCC
1 TAAACCCT-AAAACTA
* *
51211727 TAAAACAT-AAACTA
1 TAAACCCTAAAACTA
* **
51211741 TAAACCCTTAAACCC
1 TAAACCCTAAAACTA
* *
51211756 CAAACCCTAAACCT-
1 TAAACCCTAAAACTA
51211770 TAAACCCT-AAACATA
1 TAAACCCTAAAAC-TA
51211785 TAAACCCTAAA
1 TAAACCCTAAA
51211796 CCCCTAAACC
Statistics
Matches: 63, Mismatches: 17, Indels: 9
0.71 0.19 0.10
Matches are distributed among these distances:
13 3 0.05
14 18 0.29
15 29 0.46
16 13 0.21
ACGTcount: A:0.51, C:0.30, G:0.00, T:0.19
Consensus pattern (15 bp):
TAAACCCTAAAACTA
Found at i:51211741 original size:30 final size:32
Alignment explanation
Indices: 51211691--51211752 Score: 92
Period size: 31 Copynumber: 2.0 Consensus size: 32
51211681 AACAAACCCT
* *
51211691 AACCCTAAACCCTAAAACTATAAA-CCTTAAA
1 AACCCTAAAACATAAAACTATAAACCCTTAAA
51211722 AACCCTAAAACAT-AAACTATAAACCCTTAAA
1 AACCCTAAAACATAAAACTATAAACCCTTAAA
51211753 CCCCAAACCC
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
30 10 0.36
31 18 0.64
ACGTcount: A:0.53, C:0.27, G:0.00, T:0.19
Consensus pattern (32 bp):
AACCCTAAAACATAAAACTATAAACCCTTAAA
Found at i:51211754 original size:8 final size:7
Alignment explanation
Indices: 51211684--51211845 Score: 85
Period size: 7 Copynumber: 22.4 Consensus size: 7
51211674 TTTAATTAAC
51211684 AAACCCT
1 AAACCCT
51211691 -AACCCT
1 AAACCCT
51211697 AAACCCT
1 AAACCCT
**
51211704 AAAACTAT
1 -AAACCCT
*
51211712 AAACCTT
1 AAACCCT
51211719 AAAAACCCT
1 --AAACCCT
* *
51211728 AAAACAT
1 AAACCCT
**
51211735 AAACTAT
1 AAACCCT
51211742 AAACCCTT
1 AAACCC-T
*
51211750 AAACCCC
1 AAACCCT
51211757 AAACCCT
1 AAACCCT
*
51211764 AAACCTT
1 AAACCCT
51211771 AAACCCT
1 AAACCCT
**
51211778 AAACATAT
1 AAAC-CCT
51211786 AAACCCT
1 AAACCCT
51211793 AAACCCCT
1 AAA-CCCT
*
51211801 AAACCAT
1 AAACCCT
* *
51211808 AAGTCAC-
1 AA-ACCCT
*
51211815 AAGCCCT
1 AAACCCT
* *
51211822 AATCCTT
1 AAACCCT
51211829 AAACCCT
1 AAACCCT
*
51211836 AAACCTT
1 AAACCCT
51211843 AAA
1 AAA
51211846 AACCATTACC
Statistics
Matches: 116, Mismatches: 30, Indels: 18
0.71 0.18 0.11
Matches are distributed among these distances:
6 8 0.07
7 77 0.66
8 25 0.22
9 6 0.05
ACGTcount: A:0.47, C:0.33, G:0.01, T:0.19
Consensus pattern (7 bp):
AAACCCT
Found at i:51211774 original size:36 final size:36
Alignment explanation
Indices: 51211721--51211809 Score: 99
Period size: 36 Copynumber: 2.4 Consensus size: 36
51211711 TAAACCTTAA
* * *
51211721 AAACCCTAAAACATAAACTATAAACCCT-TAAACCCC
1 AAACCCTAAACCATAAACCATAAA-CATATAAACCCC
* * *
51211757 AAACCCTAAACCTTAAACCCTAAACATATAAACCCT
1 AAACCCTAAACCATAAACCATAAACATATAAACCCC
51211793 AAACCCCTAAACCATAA
1 AAA-CCCTAAACCATAA
51211810 GTCACAAGCC
Statistics
Matches: 44, Mismatches: 7, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
35 2 0.05
36 30 0.68
37 12 0.27
ACGTcount: A:0.49, C:0.34, G:0.00, T:0.17
Consensus pattern (36 bp):
AAACCCTAAACCATAAACCATAAACATATAAACCCC
Found at i:51211837 original size:14 final size:14
Alignment explanation
Indices: 51211684--51211845 Score: 94
Period size: 14 Copynumber: 11.2 Consensus size: 14
51211674 TTTAATTAAC
*
51211684 AAACCCT-AACCCT
1 AAACCCTAAACCTT
*
51211697 AAACCCTAAAACTAT
1 AAACCCTAAACCT-T
* *
51211712 AAACCTTAAAAACCCT
1 AAACCCT--AAACCTT
* *
51211728 AAAACATAAA-CTAT
1 AAACCCTAAACCT-T
**
51211742 AAACCCTTAAACCCC
1 AAACCC-TAAACCTT
51211757 AAACCCTAAACCTT
1 AAACCCTAAACCTT
*
51211771 AAACCCTAAACATAT
1 AAACCCTAAACCT-T
*
51211786 AAACCCTAAACCCCT
1 AAACCCTAAA-CCTT
* ** **
51211801 AAACCATAAGTCAC
1 AAACCCTAAACCTT
* *
51211815 AAGCCCTAATCCTT
1 AAACCCTAAACCTT
51211829 AAACCCTAAACCTT
1 AAACCCTAAACCTT
51211843 AAA
1 AAA
51211846 AACCATTACC
Statistics
Matches: 110, Mismatches: 30, Indels: 17
0.70 0.19 0.11
Matches are distributed among these distances:
13 8 0.07
14 53 0.48
15 37 0.34
16 8 0.07
17 4 0.04
ACGTcount: A:0.47, C:0.33, G:0.01, T:0.19
Consensus pattern (14 bp):
AAACCCTAAACCTT
Found at i:51211892 original size:22 final size:21
Alignment explanation
Indices: 51211867--51212036 Score: 148
Period size: 22 Copynumber: 7.9 Consensus size: 21
51211857 TAAAAACATT
51211867 AACCCTTAACTTAAAAACCACA
1 AACCCTTAACTTAAAAACC-CA
* *
51211889 AACCCTAAAC-CAAAAACCCTA
1 AACCCTTAACTTAAAAACCC-A
51211910 AACCCTTAACTTAAAAACACCA
1 AACCCTTAACTTAAAAAC-CCA
* * * * **
51211932 AATCCTTACCCT-AAAATCGT
1 AACCCTTAACTTAAAAACCCA
*
51211952 AACCCTTAACTTAAAAACCAAA
1 AACCCTTAACTTAAAAACC-CA
*
51211974 AACCC-TAACCCTAAAAACCCTA
1 AACCCTTAA-CTTAAAAACCC-A
51211996 AACCCTTAACTTAAAAATCCCA
1 AACCCTTAACTTAAAAA-CCCA
* *
51212018 AACCATTAACTTTAAAACC
1 AACCCTTAACTTAAAAACC
51212037 TAAAAACCCT
Statistics
Matches: 118, Mismatches: 21, Indels: 19
0.75 0.13 0.12
Matches are distributed among these distances:
20 11 0.09
21 31 0.26
22 68 0.58
23 8 0.07
ACGTcount: A:0.48, C:0.32, G:0.01, T:0.19
Consensus pattern (21 bp):
AACCCTTAACTTAAAAACCCA
Found at i:51211900 original size:14 final size:14
Alignment explanation
Indices: 51211881--51211913 Score: 57
Period size: 14 Copynumber: 2.4 Consensus size: 14
51211871 CTTAACTTAA
*
51211881 AAACCACAAACCCT
1 AAACCAAAAACCCT
51211895 AAACCAAAAACCCT
1 AAACCAAAAACCCT
51211909 AAACC
1 AAACC
51211914 CTTAACTTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.55, C:0.39, G:0.00, T:0.06
Consensus pattern (14 bp):
AAACCAAAAACCCT
Found at i:51211969 original size:42 final size:43
Alignment explanation
Indices: 51211853--51212021 Score: 200
Period size: 43 Copynumber: 3.9 Consensus size: 43
51211843 AAAAACCATT
* * *
51211853 ACCCTAAAAACATTAACCCTTAACTTAAAAACCACAAACCCTA
1 ACCCTAAAACCCTAAACCCTTAACTTAAAAACCACAAACCCTA
* * * *
51211896 AACCAAAAACCCTAAACCCTTAACTTAAAAA-CACCAAATCCTT
1 ACCCTAAAACCCTAAACCCTTAACTTAAAAACCA-CAAACCCTA
* * *
51211939 ACCCTAAAATCGT-AACCCTTAACTTAAAAACCAAAAACCCTA
1 ACCCTAAAACCCTAAACCCTTAACTTAAAAACCACAAACCCTA
51211981 ACCCTAAAAACCCTAAACCCTTAACTTAAAAATCC-CAAACC
1 ACCCT-AAAACCCTAAACCCTTAACTTAAAAA-CCACAAACC
51212022 ATTAACTTTA
Statistics
Matches: 104, Mismatches: 17, Indels: 9
0.80 0.13 0.07
Matches are distributed among these distances:
42 30 0.29
43 50 0.48
44 22 0.21
45 2 0.02
ACGTcount: A:0.48, C:0.33, G:0.01, T:0.18
Consensus pattern (43 bp):
ACCCTAAAACCCTAAACCCTTAACTTAAAAACCACAAACCCTA
Found at i:51211989 original size:15 final size:16
Alignment explanation
Indices: 51211971--51212001 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
51211961 CTTAAAAACC
51211971 AAAAACCCT-AACCCT
1 AAAAACCCTAAACCCT
51211986 AAAAACCCTAAACCCT
1 AAAAACCCTAAACCCT
51212002 TAACTTAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 9 0.60
16 6 0.40
ACGTcount: A:0.48, C:0.39, G:0.00, T:0.13
Consensus pattern (16 bp):
AAAAACCCTAAACCCT
Found at i:51212019 original size:86 final size:86
Alignment explanation
Indices: 51211851--51212012 Score: 272
Period size: 86 Copynumber: 1.9 Consensus size: 86
51211841 TTAAAAACCA
* *
51211851 TTACCCTAAAAACATTAACCCTTAACTTAAAAACCACAAACCCTAAACCAAAAACCCTAAACCCT
1 TTACCCTAAAAACAGTAACCCTTAACTTAAAAACCAAAAACCCTAAACCAAAAACCCTAAACCCT
51211916 TAACTTAAAAACACCAAATCC
66 TAACTTAAAAACACCAAATCC
* *
51211937 TTACCCTAAAATC-GTAACCCTTAACTTAAAAACCAAAAACCCTAACCCTAAAAACCCTAAACCC
1 TTACCCTAAAAACAGTAACCCTTAACTTAAAAACCAAAAACCCTAAACC-AAAAACCCTAAACCC
51212001 TTAACTTAAAAA
65 TTAACTTAAAAA
51212013 TCCCAAACCA
Statistics
Matches: 71, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
85 32 0.45
86 39 0.55
ACGTcount: A:0.48, C:0.31, G:0.01, T:0.20
Consensus pattern (86 bp):
TTACCCTAAAAACAGTAACCCTTAACTTAAAAACCAAAAACCCTAAACCAAAAACCCTAAACCCT
TAACTTAAAAACACCAAATCC
Found at i:51212064 original size:30 final size:30
Alignment explanation
Indices: 51211988--51212067 Score: 83
Period size: 30 Copynumber: 2.7 Consensus size: 30
51211978 CTAACCCTAA
* *
51211988 AAACCCTAAACCCT-TAACTTAAAAATCCC
1 AAACCCTAAACCCTAAAACCTAAAAATCCC
* * **
51212017 AAACCATTAACTTTAAAACCTAAAAA-CCC
1 AAACCCTAAACCCTAAAACCTAAAAATCCC
51212046 TAAACCCTAAACCCTAAAACCT
1 -AAACCCTAAACCCTAAAACCT
51212068 TAACTTTAAA
Statistics
Matches: 39, Mismatches: 10, Indels: 3
0.75 0.19 0.06
Matches are distributed among these distances:
29 13 0.33
30 26 0.67
ACGTcount: A:0.47, C:0.33, G:0.00, T:0.20
Consensus pattern (30 bp):
AAACCCTAAACCCTAAAACCTAAAAATCCC
Found at i:51212299 original size:104 final size:105
Alignment explanation
Indices: 51212099--51212318 Score: 406
Period size: 104 Copynumber: 2.1 Consensus size: 105
51212089 TAAGTTAAAT
*
51212099 ATAATTTGATAATTCTACTAACCATTAATACAATTATCAGTTAGTATTTTTTACATTCACATAAT
1 ATAATTTGATAATTCTACTAACCATTAATACAATTATCAGTTAATATTTTTTACATTCACATAAT
51212164 GTTAGATTTGAAAACATGTTTTGACTGGTACTAACAATTA
66 GTTAGATTTGAAAACATGTTTTGACTGGTACTAACAATTA
*
51212204 ATAATTTGATAATTTTACTAACCATTAATACAATTATCAGTTAATA-TTTTTACATTCACATAAT
1 ATAATTTGATAATTCTACTAACCATTAATACAATTATCAGTTAATATTTTTTACATTCACATAAT
*
51212268 GTTAGATTTGAAAACATGTTTTGATTGGTACTAACAATTA
66 GTTAGATTTGAAAACATGTTTTGACTGGTACTAACAATTA
51212308 ATAATTTGATA
1 ATAATTTGATA
51212319 TAATTTGATA
Statistics
Matches: 112, Mismatches: 3, Indels: 1
0.97 0.03 0.01
Matches are distributed among these distances:
104 68 0.61
105 44 0.39
ACGTcount: A:0.38, C:0.11, G:0.09, T:0.42
Consensus pattern (105 bp):
ATAATTTGATAATTCTACTAACCATTAATACAATTATCAGTTAATATTTTTTACATTCACATAAT
GTTAGATTTGAAAACATGTTTTGACTGGTACTAACAATTA
Found at i:51215634 original size:126 final size:124
Alignment explanation
Indices: 51215377--51215889 Score: 694
Period size: 126 Copynumber: 4.1 Consensus size: 124
51215367 CATACATGCT
* * * *
51215377 ACTGTAGAAAAAGGGCATCCACGTGGGCGCGATTTCACAAATTCTTCTCATAAAGCATCATGCTA
1 ACTGTAGCAAAAGCGCATCCACGAGGGCGCGATTTCACAAATTCTTCTCATAAAGCATCCTGCTA
* *
51215442 GAAGCGATTTTATACTATTTGCTCAGAAATGTCAACTCGAAA-TATTTCTGCCAGGACCA
66 GAAGCGATTTTATACTATTTGCTCAGAAACGTCAACTCGAAATTATTTCT-TCAGGACCA
51215501 ACTGTAGCAAAAGCGCATCCACGAGGGCGCGATTTCACAAATTCTTCTCA-AATAGCATCCTGCT
1 ACTGTAGCAAAAGCGCATCCACGAGGGCGCGATTTCACAAATTCTTCTCATAA-AGCATCCTGCT
* * *
51215565 TGAAGCGTTTTTTTATACTATTTGCTCAGAAACGTCAACTCGAAATAATTTCTTCAGGACCA
65 AGAAGCG--ATTTTATACTATTTGCTCAGAAACGTCAACTCGAAATTATTTCTTCAGGACCA
* *
51215627 ACTGTAGCAAAAGCGCGTCCAC-ATGGGCGCGATTTCACAAATTCTTCTCATAAAGCATCCTGGT
1 ACTGTAGCAAAAGCGCATCCACGA-GGGCGCGATTTCACAAATTCTTCTCATAAAGCATCCTGCT
*
51215691 AGAAGCGATTTTATACTATTTGCTCAGAAACGTCAACTCAAAATTATTTCTTCCAGGACCA
65 AGAAGCGATTTTATACTATTTGCTCAGAAACGTCAACTCGAAATTATTTCTT-CAGGACCA
* * * * * *
51215752 ACTGTAGCCAAAGCGCGTCTAGGAGGGCACGATTTCACAAATTCTTCACA-AATAGCATCCTGCT
1 ACTGTAGCAAAAGCGCATCCACGAGGGCGCGATTTCACAAATTCTTCTCATAA-AGCATCCTGCT
* * * * * *
51215816 TGAAGCGTTTTTTATACTTTTTACTCAGAAATGTCAACTCGAAATTATTT-TTCAAGGACCG
65 AGAAGCG-ATTTTATACTATTTGCTCAGAAACGTCAACTCGAAATTATTTCTTC-AGGACCA
51215877 ACTGTAGCAAAAG
1 ACTGTAGCAAAAG
51215890 AACGTACATG
Statistics
Matches: 349, Mismatches: 29, Indels: 21
0.87 0.07 0.05
Matches are distributed among these distances:
123 2 0.01
124 108 0.31
125 88 0.25
126 143 0.41
127 8 0.02
ACGTcount: A:0.31, C:0.23, G:0.18, T:0.29
Consensus pattern (124 bp):
ACTGTAGCAAAAGCGCATCCACGAGGGCGCGATTTCACAAATTCTTCTCATAAAGCATCCTGCTA
GAAGCGATTTTATACTATTTGCTCAGAAACGTCAACTCGAAATTATTTCTTCAGGACCA
Found at i:51215829 original size:250 final size:250
Alignment explanation
Indices: 51215377--51215889 Score: 814
Period size: 250 Copynumber: 2.1 Consensus size: 250
51215367 CATACATGCT
* * *
51215377 ACTGTAGAAAAAGGGCATCCACGTGGGCGCGATTTCACAAATTCTTCTCATAAAGCATCATGCTA
1 ACTGTAGCAAAAGCGCATCCACATGGGCGCGATTTCACAAATTCTTCTCATAAAGCATCATGCTA
* *
51215442 GAAGCGATTTTATACTATTTGCTCAGAAATGTCAACTCGAAATATTTCTGCCAGGACCAACTGTA
66 GAAGCGATTTTATACTATTTGCTCAGAAACGTCAACTCAAAATATTTCTGCCAGGACCAACTGTA
* *
51215507 GCAAAAGCGCATCCACGAGGGCGCGATTTCACAAATTCTTCTCAAATAGCATCCTGCTTGAAGCG
131 GCAAAAGCGCATCCACGAGGGCACGATTTCACAAATTCTTCACAAATAGCATCCTGCTTGAAGCG
*
51215572 TTTTTTTATACTATTTGCTCAGAAACGTCAACTCGAAATAATTTCTTC-AGGACCA
196 TTTTTTTATACTATTTACTCAGAAACGTCAACTCGAAATAATTT-TTCAAGGACCA
* * *
51215627 ACTGTAGCAAAAGCGCGTCCACATGGGCGCGATTTCACAAATTCTTCTCATAAAGCATCCTGGTA
1 ACTGTAGCAAAAGCGCATCCACATGGGCGCGATTTCACAAATTCTTCTCATAAAGCATCATGCTA
*
51215692 GAAGCGATTTTATACTATTTGCTCAGAAACGTCAACTCAAAATTATTTCTTCCAGGACCAACTGT
66 GAAGCGATTTTATACTATTTGCTCAGAAACGTCAACTCAAAA-TATTTCTGCCAGGACCAACTGT
* * * *
51215757 AGCCAAAGCGCGTCTAGGAGGGCACGATTTCACAAATTCTTCACAAATAGCATCCTGCTTGAAGC
130 AGCAAAAGCGCATCCACGAGGGCACGATTTCACAAATTCTTCACAAATAGCATCCTGCTTGAAGC
* * * *
51215822 G-TTTTTTATACTTTTTACTCAGAAATGTCAACTCGAAATTATTTTTCAAGGACCG
195 GTTTTTTTATACTATTTACTCAGAAACGTCAACTCGAAATAATTTTTCAAGGACCA
51215877 ACTGTAGCAAAAG
1 ACTGTAGCAAAAG
51215890 AACGTACATG
Statistics
Matches: 241, Mismatches: 20, Indels: 4
0.91 0.08 0.02
Matches are distributed among these distances:
249 3 0.01
250 157 0.65
251 81 0.34
ACGTcount: A:0.31, C:0.23, G:0.18, T:0.29
Consensus pattern (250 bp):
ACTGTAGCAAAAGCGCATCCACATGGGCGCGATTTCACAAATTCTTCTCATAAAGCATCATGCTA
GAAGCGATTTTATACTATTTGCTCAGAAACGTCAACTCAAAATATTTCTGCCAGGACCAACTGTA
GCAAAAGCGCATCCACGAGGGCACGATTTCACAAATTCTTCACAAATAGCATCCTGCTTGAAGCG
TTTTTTTATACTATTTACTCAGAAACGTCAACTCGAAATAATTTTTCAAGGACCA
Found at i:51216733 original size:25 final size:26
Alignment explanation
Indices: 51216686--51216740 Score: 101
Period size: 26 Copynumber: 2.1 Consensus size: 26
51216676 GTCATGACCA
51216686 GGGGCGAAATCAGAACAATTTTTAAG
1 GGGGCGAAATCAGAACAATTTTTAAG
*
51216712 GGGGCGAAGTCAGAACAATTTTTAAG
1 GGGGCGAAATCAGAACAATTTTTAAG
51216738 GGG
1 GGG
51216741 CAAATGAAAT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.35, C:0.11, G:0.33, T:0.22
Consensus pattern (26 bp):
GGGGCGAAATCAGAACAATTTTTAAG
Found at i:51217250 original size:2 final size:2
Alignment explanation
Indices: 51217243--51217284 Score: 84
Period size: 2 Copynumber: 21.0 Consensus size: 2
51217233 GAATTAATGT
51217243 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
51217285 ATAAGTTTTT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 40 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:51226914 original size:2 final size:2
Alignment explanation
Indices: 51226909--51226942 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
51226899 TATGTGTGTG
51226909 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
51226943 CATGTGTATG
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:51227572 original size:36 final size:35
Alignment explanation
Indices: 51227495--51227572 Score: 93
Period size: 36 Copynumber: 2.2 Consensus size: 35
51227485 AAAGGAAACT
* *
51227495 AAAAATTTCTTATAATCATTTTCACCAAATATTTA
1 AAAAATTTCTAATAATCATTTTCACCAAATACTTA
* * *
51227530 ATAAAATTTCTAATAATTATTTTTACTAAATGACTTA
1 A-AAAATTTCTAATAATCATTTTCACCAAAT-ACTTA
51227567 AAAAAT
1 AAAAAT
51227573 ATAAATAAAA
Statistics
Matches: 36, Mismatches: 5, Indels: 3
0.82 0.11 0.07
Matches are distributed among these distances:
35 1 0.03
36 30 0.83
37 5 0.14
ACGTcount: A:0.46, C:0.10, G:0.01, T:0.42
Consensus pattern (35 bp):
AAAAATTTCTAATAATCATTTTCACCAAATACTTA
Found at i:51228526 original size:13 final size:13
Alignment explanation
Indices: 51228508--51228546 Score: 51
Period size: 13 Copynumber: 2.8 Consensus size: 13
51228498 ATCACATTTG
51228508 ATTTTTTTAAAAT
1 ATTTTTTTAAAAT
51228521 ATTTTTTTATAAAT
1 ATTTTTTTA-AAAT
*
51228535 ATATTTTATAAA
1 AT-TTTTTTAAA
51228547 TAAAAAATTC
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
13 9 0.39
14 8 0.35
15 6 0.26
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (13 bp):
ATTTTTTTAAAAT
Found at i:51228528 original size:14 final size:16
Alignment explanation
Indices: 51228509--51228541 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
51228499 TCACATTTGA
51228509 TTTTTT-TAAA-ATAT
1 TTTTTTATAAATATAT
51228523 TTTTTTATAAATATAT
1 TTTTTTATAAATATAT
51228539 TTT
1 TTT
51228542 ATAAATAAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 6 0.35
15 4 0.24
16 7 0.41
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (16 bp):
TTTTTTATAAATATAT
Found at i:51229749 original size:9 final size:9
Alignment explanation
Indices: 51229735--51229765 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
51229725 GTTAAACGAA
51229735 TCGAGTTAT
1 TCGAGTTAT
*
51229744 TCGAGTTAA
1 TCGAGTTAT
51229753 TCGAGTTAT
1 TCGAGTTAT
51229762 TCGA
1 TCGA
51229766 ATCAACTCGA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.26, C:0.13, G:0.23, T:0.39
Consensus pattern (9 bp):
TCGAGTTAT
Found at i:51230898 original size:5 final size:5
Alignment explanation
Indices: 51230888--51230913 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
51230878 CTCGAAAATT
51230888 TTCGA TTCGA TTCGA TTCGA TTCGA T
1 TTCGA TTCGA TTCGA TTCGA TTCGA T
51230914 CGAATGCTCA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.19, C:0.19, G:0.19, T:0.42
Consensus pattern (5 bp):
TTCGA
Found at i:51231146 original size:36 final size:35
Alignment explanation
Indices: 51231069--51231154 Score: 84
Period size: 36 Copynumber: 2.4 Consensus size: 35
51231059 AAAGGAAACT
* * *
51231069 AAAATTTTCTAATAATCATTTTCACCAAATATTTA
1 AAAAATTTATAATAATCATTTTCACCAAATACTTA
* * *
51231104 ATAAAATTTATAATAATTATTTTTACCAAATGACTTC
1 A-AAAATTTATAATAATCATTTTCACCAAAT-ACTTA
*
51231141 AAAAATATA-AATAA
1 AAAAATTTATAATAA
51231155 AAATTTATCT
Statistics
Matches: 42, Mismatches: 7, Indels: 4
0.79 0.13 0.08
Matches are distributed among these distances:
35 6 0.14
36 32 0.76
37 4 0.10
ACGTcount: A:0.49, C:0.10, G:0.01, T:0.40
Consensus pattern (35 bp):
AAAAATTTATAATAATCATTTTCACCAAATACTTA
Found at i:51232129 original size:21 final size:21
Alignment explanation
Indices: 51232103--51232143 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
51232093 CAATGTGGCA
51232103 AGTTAAATGT-CCACATCAGCT
1 AGTTAAAT-TCCCACATCAGCT
*
51232124 AGTTAACTTCCCACATCAGC
1 AGTTAAATTCCCACATCAGC
51232144 AATCCCATTA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 1 0.06
21 17 0.94
ACGTcount: A:0.32, C:0.29, G:0.12, T:0.27
Consensus pattern (21 bp):
AGTTAAATTCCCACATCAGCT
Found at i:51235315 original size:3 final size:3
Alignment explanation
Indices: 51235302--51235342 Score: 73
Period size: 3 Copynumber: 13.3 Consensus size: 3
51235292 AATATAGAAG
51235302 TAA TAAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T
1 TAA T-AA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T
51235343 GGCACAAAAG
Statistics
Matches: 37, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
3 34 0.92
4 3 0.08
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:51235471 original size:8 final size:8
Alignment explanation
Indices: 51235450--51235547 Score: 53
Period size: 8 Copynumber: 12.8 Consensus size: 8
51235440 AGAATTAAAA
*
51235450 TAAAAAAG
1 TAAATAAG
51235458 TAAATAAG
1 TAAATAAG
*
51235466 TGAATAA-
1 TAAATAAG
* *
51235473 TATATAAA
1 TAAATAAG
*
51235481 TATATAAG
1 TAAATAAG
*
51235489 TAAATGAG
1 TAAATAAG
*
51235497 TAAATAAA
1 TAAATAAG
*
51235505 TTAATAA-
1 TAAATAAG
*
51235512 -AATAAAAG
1 TAA-ATAAG
*
51235520 -GAATAA-
1 TAAATAAG
*
51235526 TGAATAAG
1 TAAATAAG
51235534 TAAATAAG
1 TAAATAAG
51235542 TAAATA
1 TAAATA
51235548 GATGAAAAAA
Statistics
Matches: 70, Mismatches: 15, Indels: 10
0.74 0.16 0.11
Matches are distributed among these distances:
6 1 0.01
7 17 0.24
8 52 0.74
ACGTcount: A:0.62, C:0.00, G:0.11, T:0.27
Consensus pattern (8 bp):
TAAATAAG
Found at i:51236100 original size:11 final size:11
Alignment explanation
Indices: 51236084--51236123 Score: 55
Period size: 11 Copynumber: 3.6 Consensus size: 11
51236074 TCCAAATTGC
51236084 TTTTATAGCCA
1 TTTTATAGCCA
*
51236095 TTTTATA-CAA
1 TTTTATAGCCA
51236105 TTTTTATAGCCA
1 -TTTTATAGCCA
51236117 TTTTATA
1 TTTTATA
51236124 CAATTTTTAT
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
10 2 0.08
11 21 0.84
12 2 0.08
ACGTcount: A:0.30, C:0.12, G:0.05, T:0.53
Consensus pattern (11 bp):
TTTTATAGCCA
Found at i:51236109 original size:22 final size:22
Alignment explanation
Indices: 51236084--51236134 Score: 102
Period size: 22 Copynumber: 2.3 Consensus size: 22
51236074 TCCAAATTGC
51236084 TTTTATAGCCATTTTATACAAT
1 TTTTATAGCCATTTTATACAAT
51236106 TTTTATAGCCATTTTATACAAT
1 TTTTATAGCCATTTTATACAAT
51236128 TTTTATA
1 TTTTATA
51236135 TAGATTTTTT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 29 1.00
ACGTcount: A:0.31, C:0.12, G:0.04, T:0.53
Consensus pattern (22 bp):
TTTTATAGCCATTTTATACAAT
Found at i:51236131 original size:11 final size:11
Alignment explanation
Indices: 51236095--51236134 Score: 55
Period size: 11 Copynumber: 3.6 Consensus size: 11
51236085 TTTATAGCCA
51236095 TTTTATACAAT
1 TTTTATACAAT
*
51236106 TTTTATAGCCA-
1 TTTTATA-CAAT
51236117 TTTTATACAAT
1 TTTTATACAAT
51236128 TTTTATA
1 TTTTATA
51236135 TAGATTTTTT
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
10 2 0.08
11 21 0.84
12 2 0.08
ACGTcount: A:0.33, C:0.10, G:0.03, T:0.55
Consensus pattern (11 bp):
TTTTATACAAT
Found at i:51236471 original size:26 final size:23
Alignment explanation
Indices: 51236434--51236487 Score: 67
Period size: 24 Copynumber: 2.3 Consensus size: 23
51236424 ATATATCACA
51236434 ATTAT-AACATTACATAATATAAAT
1 ATTATAAACATTACA-AA-ATAAAT
51236458 ATTATAAACAATTACAAAATAAAT
1 ATTATAAAC-ATTACAAAATAAAT
51236482 A-TATAA
1 ATTATAA
51236488 GGAGATAAGT
Statistics
Matches: 28, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
23 5 0.18
24 12 0.43
25 5 0.18
26 6 0.21
ACGTcount: A:0.59, C:0.07, G:0.00, T:0.33
Consensus pattern (23 bp):
ATTATAAACATTACAAAATAAAT
Found at i:51242996 original size:13 final size:13
Alignment explanation
Indices: 51242978--51243007 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
51242968 TCCAGCAACT
51242978 ATGAATTTATTTC
1 ATGAATTTATTTC
*
51242991 ATGAATTTATTTG
1 ATGAATTTATTTC
51243004 ATGA
1 ATGA
51243008 TGATCCAAGC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.33, C:0.03, G:0.13, T:0.50
Consensus pattern (13 bp):
ATGAATTTATTTC
Done.