Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr09 ID=Chr09-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 70713020
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 1142373 characters in sequence are not A, C, G, or T
File 164 of 226
Found at i:52306577 original size:2 final size:2
Alignment explanation
Indices: 52306570--52306608 Score: 78
Period size: 2 Copynumber: 19.5 Consensus size: 2
52306560 CCATAACCGA
52306570 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
52306609 ATACCAAAAC
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:52307566 original size:43 final size:43
Alignment explanation
Indices: 52307454--52307569 Score: 121
Period size: 43 Copynumber: 2.7 Consensus size: 43
52307444 AAAGCTCGTA
* **
52307454 CAATGCCAACGTCCCAGACGTGGTCTTACATGTATTCACAAAT
1 CAATGCCAACGTCCCAGACGTGGTCTTACATATAAACACAAAT
* * * *
52307497 CGATGTC-ACTATCCCAGACAG-AGTCTTAC-TCATAAACACAAAT
1 CAATGCCAAC-GTCCCAGAC-GTGGTCTTACAT-ATAAACACAAAT
52307540 CAATGCCAACGTCCCAGACGTGGTCTTACA
1 CAATGCCAACGTCCCAGACGTGGTCTTACA
52307570 CGAAAACGCA
Statistics
Matches: 56, Mismatches: 11, Indels: 11
0.72 0.14 0.14
Matches are distributed among these distances:
42 4 0.07
43 49 0.88
44 3 0.05
ACGTcount: A:0.32, C:0.29, G:0.16, T:0.23
Consensus pattern (43 bp):
CAATGCCAACGTCCCAGACGTGGTCTTACATATAAACACAAAT
Found at i:52309069 original size:23 final size:21
Alignment explanation
Indices: 52309043--52309095 Score: 52
Period size: 23 Copynumber: 2.4 Consensus size: 21
52309033 AAAAAATATT
*
52309043 AAAATAAATAATACATTAAATTG
1 AAAATAAATAATAAATTAAA--G
* **
52309066 AAAAAAAATCTTAAATTAAAG
1 AAAATAAATAATAAATTAAAG
52309087 AAAATAAAT
1 AAAATAAAT
52309096 GTAATTATTT
Statistics
Matches: 25, Mismatches: 5, Indels: 2
0.78 0.16 0.06
Matches are distributed among these distances:
21 9 0.36
23 16 0.64
ACGTcount: A:0.66, C:0.04, G:0.04, T:0.26
Consensus pattern (21 bp):
AAAATAAATAATAAATTAAAG
Found at i:52309081 original size:18 final size:17
Alignment explanation
Indices: 52309058--52309091 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
52309048 AAATAATACA
52309058 TTAAATTGAAAAAAAATC
1 TTAAATT-AAAAAAAATC
*
52309076 TTAAATTAAAGAAAAT
1 TTAAATTAAAAAAAAT
52309092 AAATGTAATT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 8 0.53
18 7 0.47
ACGTcount: A:0.62, C:0.03, G:0.06, T:0.29
Consensus pattern (17 bp):
TTAAATTAAAAAAAATC
Found at i:52313250 original size:9 final size:9
Alignment explanation
Indices: 52313236--52313268 Score: 57
Period size: 9 Copynumber: 3.7 Consensus size: 9
52313226 CATTTCATTA
52313236 ATCCAACTT
1 ATCCAACTT
*
52313245 ATCCAAGTT
1 ATCCAACTT
52313254 ATCCAACTT
1 ATCCAACTT
52313263 ATCCAA
1 ATCCAA
52313269 GATGCTGGAG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
9 22 1.00
ACGTcount: A:0.36, C:0.30, G:0.03, T:0.30
Consensus pattern (9 bp):
ATCCAACTT
Found at i:52314077 original size:14 final size:14
Alignment explanation
Indices: 52314058--52314087 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
52314048 TTTATTATAT
52314058 AATTTAATCAGTTA
1 AATTTAATCAGTTA
*
52314072 AATTTAATCCGTTA
1 AATTTAATCAGTTA
52314086 AA
1 AA
52314088 ATAAATAAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.43, C:0.10, G:0.07, T:0.40
Consensus pattern (14 bp):
AATTTAATCAGTTA
Found at i:52314220 original size:7 final size:7
Alignment explanation
Indices: 52314175--52314230 Score: 53
Period size: 7 Copynumber: 7.7 Consensus size: 7
52314165 ACGTTGTGTA
52314175 TTTAATT
1 TTTAATT
52314182 TTT-ATAT
1 TTTAAT-T
52314189 TTTAATT
1 TTTAATT
52314196 TGATT-ATT
1 T--TTAATT
52314204 TTTAATT
1 TTTAATT
52314211 TTTAATTT
1 TTTAA-TT
*
52314219 TTTAAAT
1 TTTAATT
52314226 TTTAA
1 TTTAA
52314231 AATTTCATGT
Statistics
Matches: 42, Mismatches: 1, Indels: 12
0.76 0.02 0.22
Matches are distributed among these distances:
6 4 0.10
7 23 0.55
8 13 0.31
9 2 0.05
ACGTcount: A:0.30, C:0.00, G:0.02, T:0.68
Consensus pattern (7 bp):
TTTAATT
Found at i:52314220 original size:15 final size:14
Alignment explanation
Indices: 52314175--52314229 Score: 58
Period size: 15 Copynumber: 3.8 Consensus size: 14
52314165 ACGTTGTGTA
*
52314175 TTTAATTTTTATAT
1 TTTAATTTTTATTT
52314189 TTTAATTTGATTA-TT
1 TTTAATTT--TTATTT
52314204 TTTAATTTTTAATTT
1 TTTAATTTTT-ATTT
*
52314219 TTTAAATTTTA
1 TTTAATTTTTA
52314230 AAATTTCATG
Statistics
Matches: 35, Mismatches: 2, Indels: 8
0.78 0.04 0.18
Matches are distributed among these distances:
13 2 0.06
14 10 0.29
15 20 0.57
16 3 0.09
ACGTcount: A:0.29, C:0.00, G:0.02, T:0.69
Consensus pattern (14 bp):
TTTAATTTTTATTT
Found at i:52314754 original size:18 final size:19
Alignment explanation
Indices: 52314723--52314760 Score: 60
Period size: 18 Copynumber: 2.1 Consensus size: 19
52314713 TCTCTTTTTT
*
52314723 AAAAATAAATAAAAATACA
1 AAAAAGAAATAAAAATACA
52314742 AAAAAGAAA-AAAAATACA
1 AAAAAGAAATAAAAATACA
52314760 A
1 A
52314761 GAATTTCAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 10 0.56
19 8 0.44
ACGTcount: A:0.82, C:0.05, G:0.03, T:0.11
Consensus pattern (19 bp):
AAAAAGAAATAAAAATACA
Found at i:52318261 original size:2 final size:2
Alignment explanation
Indices: 52318254--52318286 Score: 57
Period size: 2 Copynumber: 16.5 Consensus size: 2
52318244 TTCTCTTCTA
*
52318254 AT AT AT AT AT GT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
52318287 CTACCCAAAA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.03, T:0.48
Consensus pattern (2 bp):
AT
Found at i:52321385 original size:42 final size:42
Alignment explanation
Indices: 52321326--52321409 Score: 159
Period size: 42 Copynumber: 2.0 Consensus size: 42
52321316 ACTGGAAAAA
*
52321326 ATGTTTGTCTGGCATTACAAGAATTTCTTTAAAGTTAATAGT
1 ATGTTTGTCTGCCATTACAAGAATTTCTTTAAAGTTAATAGT
52321368 ATGTTTGTCTGCCATTACAAGAATTTCTTTAAAGTTAATAGT
1 ATGTTTGTCTGCCATTACAAGAATTTCTTTAAAGTTAATAGT
52321410 TTGAGAGATT
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 41 1.00
ACGTcount: A:0.31, C:0.11, G:0.15, T:0.43
Consensus pattern (42 bp):
ATGTTTGTCTGCCATTACAAGAATTTCTTTAAAGTTAATAGT
Found at i:52321811 original size:2 final size:2
Alignment explanation
Indices: 52321804--52321848 Score: 90
Period size: 2 Copynumber: 22.5 Consensus size: 2
52321794 AATATACATG
52321804 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
52321846 TA T
1 TA T
52321849 TATNNNNNNN
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 43 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:52322489 original size:33 final size:33
Alignment explanation
Indices: 52322422--52322489 Score: 86
Period size: 33 Copynumber: 2.1 Consensus size: 33
52322412 TCGGTCCAAC
*
52322422 TAAAATTTAATTTAAATAATACAAAATTATTTT
1 TAAAATTTAATTTAAATAATACAAAATTACTTT
*
52322455 TAAAATTTAAATTT-AATTATA-AAAATATACTTT
1 TAAAATTT-AATTTAAATAATACAAAAT-TACTTT
52322488 TA
1 TA
52322490 TTTTTTTTGA
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
32 5 0.16
33 21 0.68
34 5 0.16
ACGTcount: A:0.51, C:0.03, G:0.00, T:0.46
Consensus pattern (33 bp):
TAAAATTTAATTTAAATAATACAAAATTACTTT
Found at i:52326281 original size:34 final size:34
Alignment explanation
Indices: 52326238--52326315 Score: 138
Period size: 34 Copynumber: 2.2 Consensus size: 34
52326228 AACGTCTAGG
52326238 CCAGGTTTGGGGTGTTACAGAGCCTATAAGCTCA
1 CCAGGTTTGGGGTGTTACAGAGCCTATAAGCTCA
52326272 CCAGGTTTGGGGTGTTACAGAGCCTATAAGCTCA
1 CCAGGTTTGGGGTGTTACAGAGCCTATAAGCTCA
52326306 CTCAGTGTTT
1 C-CAG-GTTT
52326316 CTAACTTCTC
Statistics
Matches: 42, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
34 35 0.83
35 3 0.07
36 4 0.10
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (34 bp):
CCAGGTTTGGGGTGTTACAGAGCCTATAAGCTCA
Found at i:52328003 original size:29 final size:29
Alignment explanation
Indices: 52327961--52328019 Score: 118
Period size: 29 Copynumber: 2.0 Consensus size: 29
52327951 AACAAATTGA
52327961 AAACAAAACAAAGTTACATTTTGCACCTT
1 AAACAAAACAAAGTTACATTTTGCACCTT
52327990 AAACAAAACAAAGTTACATTTTGCACCTT
1 AAACAAAACAAAGTTACATTTTGCACCTT
52328019 A
1 A
52328020 TACTTGTTCA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.46, C:0.20, G:0.07, T:0.27
Consensus pattern (29 bp):
AAACAAAACAAAGTTACATTTTGCACCTT
Found at i:52328878 original size:23 final size:23
Alignment explanation
Indices: 52328834--52328895 Score: 60
Period size: 23 Copynumber: 2.8 Consensus size: 23
52328824 TTATATTCTT
**
52328834 GTGAAAAAAAATAATACA-TTAAA
1 GTGAAAAAAAATCTTA-ATTTAAA
52328857 GTGAAAAAAAATCTTAATTTAAA
1 GTGAAAAAAAATCTTAATTTAAA
*
52328880 --GAAAATAAA-CTTAATT
1 GTGAAAAAAAATCTTAATT
52328896 ATTTTTTAAA
Statistics
Matches: 35, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
20 7 0.20
21 8 0.23
22 1 0.03
23 19 0.54
ACGTcount: A:0.60, C:0.05, G:0.08, T:0.27
Consensus pattern (23 bp):
GTGAAAAAAAATCTTAATTTAAA
Found at i:52338541 original size:18 final size:18
Alignment explanation
Indices: 52338504--52338541 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
52338494 AAAAAATCAC
*
52338504 ATTTTTTACATTTAATAT
1 ATTTTTTACATTTAAAAT
52338522 ATTTTTTA-ATTTCAAAAT
1 ATTTTTTACATTT-AAAAT
52338540 AT
1 AT
52338542 ACGATGACAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 4 0.22
18 14 0.78
ACGTcount: A:0.37, C:0.05, G:0.00, T:0.58
Consensus pattern (18 bp):
ATTTTTTACATTTAAAAT
Found at i:52348914 original size:40 final size:40
Alignment explanation
Indices: 52348870--52348953 Score: 116
Period size: 40 Copynumber: 2.1 Consensus size: 40
52348860 TGCTTGGGGA
*
52348870 TTTAGCGACATTTTTGAAAAAGCGCCGCT-AATTCTCTATT
1 TTTAGCGACATTTTTGAAAAAGCGCCG-TGAATGCTCTATT
* * *
52348910 TTTAGCGGCATTTTTGAAGAAGCGCTGTGAATGCTCTATT
1 TTTAGCGACATTTTTGAAAAAGCGCCGTGAATGCTCTATT
52348950 TTTA
1 TTTA
52348954 TCTCATATTT
Statistics
Matches: 39, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
39 1 0.03
40 38 0.97
ACGTcount: A:0.25, C:0.17, G:0.19, T:0.39
Consensus pattern (40 bp):
TTTAGCGACATTTTTGAAAAAGCGCCGTGAATGCTCTATT
Found at i:52349153 original size:40 final size:40
Alignment explanation
Indices: 52349066--52349201 Score: 141
Period size: 40 Copynumber: 3.4 Consensus size: 40
52349056 AATATTCAAT
* *** **
52349066 ATTTTTGAAAAAGCGCCGCGAATGCT-TGGGGATTTAGCAAC
1 ATTTTTGAAAAAGCGCCGTGAATGCTCT--ATTTTTAGCGGC
*
52349107 ATTTTTGAAAAAGCGCCGCT-AATTCTCTATTTTTAGCGGC
1 ATTTTTGAAAAAGCGCCG-TGAATGCTCTATTTTTAGCGGC
* *
52349147 ATTTTTGAAGAAGCGCTGTGAATGCTCTATTTTTAGCGGC
1 ATTTTTGAAAAAGCGCCGTGAATGCTCTATTTTTAGCGGC
*
52349187 GTTTTTGAAAAAGCG
1 ATTTTTGAAAAAGCG
52349202 TCGCAATAAA
Statistics
Matches: 80, Mismatches: 12, Indels: 7
0.81 0.12 0.07
Matches are distributed among these distances:
39 1 0.01
40 55 0.69
41 23 0.29
42 1 0.01
ACGTcount: A:0.26, C:0.16, G:0.24, T:0.34
Consensus pattern (40 bp):
ATTTTTGAAAAAGCGCCGTGAATGCTCTATTTTTAGCGGC
Found at i:52350769 original size:9 final size:9
Alignment explanation
Indices: 52350740--52350796 Score: 53
Period size: 9 Copynumber: 6.3 Consensus size: 9
52350730 TAATATTATC
*
52350740 AATAATAGC
1 AATAATAGT
52350749 AATAATAGT
1 AATAATAGT
*
52350758 AATAATATT
1 AATAATAGT
*
52350767 AATAATAAT
1 AATAATAGT
*
52350776 GAA-AGTAGT
1 -AATAATAGT
*
52350785 AATAATAAT
1 AATAATAGT
52350794 AAT
1 AAT
52350797 TATAACAACA
Statistics
Matches: 39, Mismatches: 7, Indels: 4
0.78 0.14 0.08
Matches are distributed among these distances:
8 2 0.05
9 35 0.90
10 2 0.05
ACGTcount: A:0.58, C:0.02, G:0.09, T:0.32
Consensus pattern (9 bp):
AATAATAGT
Found at i:52350784 original size:27 final size:30
Alignment explanation
Indices: 52350728--52350801 Score: 84
Period size: 27 Copynumber: 2.6 Consensus size: 30
52350718 TATAAAAGCA
52350728 AATAATATT-ATCAATAATAGCAATAATAGT
1 AATAATATTAAT-AATAATAGCAATAATAGT
*
52350758 AATAATATTAATAATAAT-G-AA-AGTAGT
1 AATAATATTAATAATAATAGCAATAATAGT
* *
52350785 AATAATAATAATTATAA
1 AATAATATTAATAATAA
52350802 CAACAACAAC
Statistics
Matches: 40, Mismatches: 3, Indels: 5
0.83 0.06 0.10
Matches are distributed among these distances:
27 20 0.50
28 2 0.05
29 1 0.03
30 15 0.38
31 2 0.05
ACGTcount: A:0.57, C:0.03, G:0.07, T:0.34
Consensus pattern (30 bp):
AATAATATTAATAATAATAGCAATAATAGT
Found at i:52351644 original size:8 final size:8
Alignment explanation
Indices: 52351627--52351660 Score: 50
Period size: 8 Copynumber: 4.1 Consensus size: 8
52351617 AAAATCCCTC
*
52351627 TTTTTCTA
1 TTTTTTTA
52351635 TTTTTTTA
1 TTTTTTTA
52351643 TTTTTTTA
1 TTTTTTTA
52351651 TGTTTTTTA
1 T-TTTTTTA
52351660 T
1 T
52351661 CTCCCCTTAC
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
8 16 0.67
9 8 0.33
ACGTcount: A:0.12, C:0.03, G:0.03, T:0.82
Consensus pattern (8 bp):
TTTTTTTA
Found at i:52354892 original size:19 final size:17
Alignment explanation
Indices: 52354855--52354888 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
52354845 GCCATTGGTA
*
52354855 AAAGTAAAGAAAATTTC
1 AAAGTAAAAAAAATTTC
52354872 AAAGTAAAAAATAATTT
1 AAAGTAAAAAA-AATTT
52354889 TCAAGAAATG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 10 0.67
18 5 0.33
ACGTcount: A:0.62, C:0.03, G:0.09, T:0.26
Consensus pattern (17 bp):
AAAGTAAAAAAAATTTC
Found at i:52366381 original size:43 final size:43
Alignment explanation
Indices: 52366273--52366383 Score: 107
Period size: 43 Copynumber: 2.6 Consensus size: 43
52366263 ACTAAAGACT
* * ** * * **
52366273 ACGCCGCTAAAGACCACGACCTTTAGCGGCGCTTTTGCCACGA
1 ACGCCACTAAAGAACATAACCTTTAGCGGCGCTTTCGCAAAAA
* * *
52366316 ACGCCGCTAAAGATCATGACCTTTAGCGGCGCTTCTCGCAAAAA
1 ACGCCACTAAAGAACATAACCTTTAGCGGCGCTT-TCGCAAAAA
52366360 ACGCCACTAAA-AACATAACCTTTA
1 ACGCCACTAAAGAACATAACCTTTA
52366384 AAAAAATTAT
Statistics
Matches: 58, Mismatches: 9, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
43 43 0.74
44 15 0.26
ACGTcount: A:0.31, C:0.32, G:0.18, T:0.20
Consensus pattern (43 bp):
ACGCCACTAAAGAACATAACCTTTAGCGGCGCTTTCGCAAAAA
Found at i:52371070 original size:7 final size:7
Alignment explanation
Indices: 52371060--52371261 Score: 54
Period size: 7 Copynumber: 28.6 Consensus size: 7
52371050 TCATAAAACA
52371060 TAAACCT
1 TAAACCT
*
52371067 TAAACCCC
1 TAAA-CCT
* *
52371075 TAACCCC
1 TAAACCT
* *
52371082 TAACCCC
1 TAAACCT
*
52371089 TAAACAT
1 TAAACCT
*
52371096 TAAACCC
1 TAAACCT
* *
52371103 CAACCCT
1 TAAACCT
*
52371110 TAAACCA
1 TAAACCT
*
52371117 TAAACCA
1 TAAACCT
*
52371124 TAAACCA
1 TAAACCT
*
52371131 TAACCCT
1 TAAACCT
52371138 T-AACTCT
1 TAAAC-CT
*
52371145 T-AACCC
1 TAAACCT
* *
52371151 TCAACTCC
1 TAAAC-CT
*
52371159 TAACCCT
1 TAAACCT
* *
52371166 TAACCCC
1 TAAACCT
52371173 TAAACCT
1 TAAACCT
*
52371180 T-AATCT
1 TAAACCT
*
52371186 ATAAATCT
1 -TAAACCT
*
52371194 TAAACCA
1 TAAACCT
*
52371201 TAAACCG
1 TAAACCT
*
52371208 TAACCCT
1 TAAACCT
*
52371215 TAAGCCT
1 TAAACCT
*
52371222 TAAACGCA
1 TAAAC-CT
52371230 TAAA-CT
1 TAAACCT
*
52371236 ATAAACCA
1 -TAAACCT
*
52371244 T-AATCT
1 TAAACCT
52371250 ATAAACCT
1 -TAAACCT
52371258 TAAA
1 TAAA
52371262 ATAGTAACTC
Statistics
Matches: 147, Mismatches: 37, Indels: 22
0.71 0.18 0.11
Matches are distributed among these distances:
6 12 0.08
7 110 0.75
8 25 0.17
ACGTcount: A:0.42, C:0.34, G:0.01, T:0.23
Consensus pattern (7 bp):
TAAACCT
Found at i:52371079 original size:14 final size:15
Alignment explanation
Indices: 52371064--52371182 Score: 81
Period size: 14 Copynumber: 8.4 Consensus size: 15
52371054 AAAACATAAA
52371064 CCTTAAACCCCTAAC
1 CCTTAAACCCCTAAC
* *
52371079 CCCT-AACCCCTAAA
1 CCTTAAACCCCTAAC
*
52371093 CATTAAACCCC-AAC
1 CCTTAAACCCCTAAC
* *
52371107 CCTTAAA-CCATAAA
1 CCTTAAACCCCTAAC
* *
52371121 CCATAAA-CCATAAC
1 CCTTAAACCCCTAAC
* *
52371135 CCTT-AACTCTTAAC
1 CCTTAAACCCCTAAC
* *
52371149 CC-TCAACTCCTAAC
1 CCTTAAACCCCTAAC
*
52371163 CCTT-AACCCCTAAA
1 CCTTAAACCCCTAAC
52371177 CCTTAA
1 CCTTAA
52371183 TCTATAAATC
Statistics
Matches: 82, Mismatches: 16, Indels: 12
0.75 0.15 0.11
Matches are distributed among these distances:
13 5 0.06
14 66 0.80
15 11 0.13
ACGTcount: A:0.38, C:0.41, G:0.00, T:0.21
Consensus pattern (15 bp):
CCTTAAACCCCTAAC
Found at i:52371113 original size:21 final size:22
Alignment explanation
Indices: 52371076--52371122 Score: 62
Period size: 21 Copynumber: 2.2 Consensus size: 22
52371066 TTAAACCCCT
52371076 AACCCCTAACCCCTAAA-CATTA
1 AACCCCTAACCCCTAAACCA-TA
*
52371098 AACCCC-AACCCTTAAACCATA
1 AACCCCTAACCCCTAAACCATA
52371119 AACC
1 AACC
52371123 ATAAACCATA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
21 15 0.65
22 8 0.35
ACGTcount: A:0.43, C:0.43, G:0.00, T:0.15
Consensus pattern (22 bp):
AACCCCTAACCCCTAAACCATA
Found at i:52371120 original size:28 final size:28
Alignment explanation
Indices: 52371053--52371140 Score: 88
Period size: 28 Copynumber: 3.1 Consensus size: 28
52371043 CATTGAATCA
* * *
52371053 TAAAACATAAACCTTAAACCCCTAACCCC
1 TAAACCATAAACATTAAACCCC-AACCCT
* *
52371082 TAACCCCTAAACATTAAACCCCAACCCT
1 TAAACCATAAACATTAAACCCCAACCCT
**
52371110 TAAACCATAAACCA-TAAACCATAACCCT
1 TAAACCATAAA-CATTAAACCCCAACCCT
52371138 TAA
1 TAA
52371141 CTCTTAACCC
Statistics
Matches: 49, Mismatches: 9, Indels: 3
0.80 0.15 0.05
Matches are distributed among these distances:
28 29 0.59
29 20 0.41
ACGTcount: A:0.45, C:0.36, G:0.00, T:0.18
Consensus pattern (28 bp):
TAAACCATAAACATTAAACCCCAACCCT
Found at i:52371190 original size:14 final size:14
Alignment explanation
Indices: 52371163--52371246 Score: 62
Period size: 14 Copynumber: 5.9 Consensus size: 14
52371153 AACTCCTAAC
* *
52371163 CCTTAACCCCTAAA
1 CCTTAAACCATAAA
* *
52371177 CCTTAATCTATAAA
1 CCTTAAACCATAAA
*
52371191 TCTTAAACCATAAA
1 CCTTAAACCATAAA
* * * *
52371205 CCGTAACCCTTAAG
1 CCTTAAACCATAAA
52371219 CCTTAAACGCATAAA
1 CCTTAAAC-CATAAA
52371234 -CTATAAACCATAA
1 CCT-TAAACCATAA
52371247 TCTATAAACC
Statistics
Matches: 53, Mismatches: 15, Indels: 4
0.74 0.21 0.06
Matches are distributed among these distances:
14 44 0.83
15 9 0.17
ACGTcount: A:0.43, C:0.29, G:0.04, T:0.25
Consensus pattern (14 bp):
CCTTAAACCATAAA
Found at i:52371199 original size:21 final size:21
Alignment explanation
Indices: 52371186--52371261 Score: 64
Period size: 21 Copynumber: 3.6 Consensus size: 21
52371176 ACCTTAATCT
*
52371186 ATAAATCTTAAACCATAAACC
1 ATAAACCTTAAACCATAAACC
* * * *
52371207 GTAACCCTTAAGCCTTAAACGC
1 ATAAACCTTAAACCATAAAC-C
* *
52371229 ATAAA-CTATAAACCATAATCT
1 ATAAACCT-TAAACCATAAACC
52371250 ATAAACCTTAAA
1 ATAAACCTTAAA
52371262 ATAGTAACTC
Statistics
Matches: 41, Mismatches: 11, Indels: 6
0.71 0.19 0.10
Matches are distributed among these distances:
21 26 0.63
22 15 0.37
ACGTcount: A:0.47, C:0.24, G:0.04, T:0.25
Consensus pattern (21 bp):
ATAAACCTTAAACCATAAACC
Found at i:52371299 original size:14 final size:14
Alignment explanation
Indices: 52371281--52371323 Score: 50
Period size: 14 Copynumber: 3.1 Consensus size: 14
52371271 CCTAAACTTT
52371281 AACCCTAAACCATA
1 AACCCTAAACCATA
* * *
52371295 TACCCTTAACCCTA
1 AACCCTAAACCATA
*
52371309 AACCCTAAACAATA
1 AACCCTAAACCATA
52371323 A
1 A
52371324 TAATAATTAA
Statistics
Matches: 22, Mismatches: 7, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.47, C:0.35, G:0.00, T:0.19
Consensus pattern (14 bp):
AACCCTAAACCATA
Found at i:52371776 original size:113 final size:112
Alignment explanation
Indices: 52371571--52371822 Score: 387
Period size: 113 Copynumber: 2.2 Consensus size: 112
52371561 CCGAGCATTA
* *
52371571 GCGGCGCTTTTCCAAAAACGCCGCTAAAGCCCATACTTTAGCGACGCTTTTTAAAAAACGCCACT
1 GCGGCGCTTTTTCAAAAACGCCGCTAAAGCCCATACATTAGCGACGCTTTTTAAAAAACGCCACT
*
52371636 AAAGCCCCTAAAACTCAAAAAAAGACGTAGTTGGGCTTAGGTTTTTT
66 AAAGCCCCAAAAACTCAAAAAAAGACGTAGTTGGGCTTAGGTTTTTT
* * *
52371683 GCGGCACTTTTTCAAAAACGCCGCTAAAGCCCCATGCATTAGCGACGCTTTTTATAAAACGCCAC
1 GCGGCGCTTTTTCAAAAACGCCGCTAAAG-CCCATACATTAGCGACGCTTTTTAAAAAACGCCAC
* * * *
52371748 TAAAGCCCCAAAAACTCAGAAAACGACGTCGTTGTGCTTAGGTTTTTT
65 TAAAGCCCCAAAAACTCAAAAAAAGACGTAGTTGGGCTTAGGTTTTTT
* *
52371796 GTGGCGCTTTTTGAAAAACGCCGCTAA
1 GCGGCGCTTTTTCAAAAACGCCGCTAA
52371823 TGCTCATTTT
Statistics
Matches: 126, Mismatches: 13, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
112 27 0.21
113 99 0.79
ACGTcount: A:0.31, C:0.25, G:0.19, T:0.25
Consensus pattern (112 bp):
GCGGCGCTTTTTCAAAAACGCCGCTAAAGCCCATACATTAGCGACGCTTTTTAAAAAACGCCACT
AAAGCCCCAAAAACTCAAAAAAAGACGTAGTTGGGCTTAGGTTTTTT
Found at i:52373101 original size:17 final size:17
Alignment explanation
Indices: 52373081--52373132 Score: 52
Period size: 17 Copynumber: 3.1 Consensus size: 17
52373071 ATTTTTATTG
*
52373081 TTCATTTTTTTTTAAAT
1 TTCAGTTTTTTTTAAAT
*
52373098 TTCAGTTTTATTT-AAT
1 TTCAGTTTTTTTTAAAT
* * *
52373114 TTTAGTTTCTTTAAAAT
1 TTCAGTTTTTTTTAAAT
52373131 TT
1 TT
52373133 TCATTTTAAA
Statistics
Matches: 28, Mismatches: 6, Indels: 2
0.78 0.17 0.06
Matches are distributed among these distances:
16 12 0.43
17 16 0.57
ACGTcount: A:0.25, C:0.06, G:0.04, T:0.65
Consensus pattern (17 bp):
TTCAGTTTTTTTTAAAT
Found at i:52373106 original size:16 final size:16
Alignment explanation
Indices: 52373087--52373128 Score: 50
Period size: 16 Copynumber: 2.6 Consensus size: 16
52373077 ATTGTTCATT
52373087 TTTTTTTAAATTTCAG
1 TTTTTTTAAATTTCAG
*
52373103 TTTTATTT-AATTTTAG
1 TTTT-TTTAAATTTCAG
*
52373119 TTTCTTTAAA
1 TTTTTTTAAA
52373129 ATTTTCATTT
Statistics
Matches: 22, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
15 3 0.14
16 16 0.73
17 3 0.14
ACGTcount: A:0.26, C:0.05, G:0.05, T:0.64
Consensus pattern (16 bp):
TTTTTTTAAATTTCAG
Found at i:52374206 original size:80 final size:80
Alignment explanation
Indices: 52374073--52374233 Score: 313
Period size: 80 Copynumber: 2.0 Consensus size: 80
52374063 GATAAGGAAG
52374073 CAAATGATTTCCTTGAGCTTCTTTTCAGCTTCCATTTGAGCTCTTCTAGCTGCTTTGGCTGCTGC
1 CAAATGATTTCCTTGAGCTTCTTTTCAGCTTCCATTTGAGCTCTTCTAGCTGCTTTGGCTGCTGC
52374138 TTTTTCAGCCAACTT
66 TTTTTCAGCCAACTT
52374153 CAAATGATTTCCTTGAGCTTCTTTTCAGCTTCCATTTGAGCTCTTCTAGCTGCTTTGGCTGCTGC
1 CAAATGATTTCCTTGAGCTTCTTTTCAGCTTCCATTTGAGCTCTTCTAGCTGCTTTGGCTGCTGC
*
52374218 TTTTTTAGCCAACTT
66 TTTTTCAGCCAACTT
52374233 C
1 C
52374234 TTTTTTCTTT
Statistics
Matches: 80, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
80 80 1.00
ACGTcount: A:0.15, C:0.26, G:0.16, T:0.43
Consensus pattern (80 bp):
CAAATGATTTCCTTGAGCTTCTTTTCAGCTTCCATTTGAGCTCTTCTAGCTGCTTTGGCTGCTGC
TTTTTCAGCCAACTT
Found at i:52382625 original size:30 final size:30
Alignment explanation
Indices: 52382591--52382657 Score: 116
Period size: 30 Copynumber: 2.2 Consensus size: 30
52382581 TTCAATTTTT
52382591 TTTGTTAAATTTTTCCTATTTATTATGGTA
1 TTTGTTAAATTTTTCCTATTTATTATGGTA
*
52382621 TTTGTTAAATTTTTCCTCTTTATTATGGTA
1 TTTGTTAAATTTTTCCTATTTATTATGGTA
52382651 TTATGTT
1 TT-TGTT
52382658 CAACTTGAGC
Statistics
Matches: 35, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
30 31 0.89
31 4 0.11
ACGTcount: A:0.21, C:0.07, G:0.10, T:0.61
Consensus pattern (30 bp):
TTTGTTAAATTTTTCCTATTTATTATGGTA
Found at i:52384917 original size:10 final size:10
Alignment explanation
Indices: 52384904--52384935 Score: 50
Period size: 9 Copynumber: 3.4 Consensus size: 10
52384894 TAAAAAATAA
52384904 TAAATAATTT
1 TAAATAATTT
52384914 TAAATAA-TT
1 TAAATAATTT
52384923 TAAA-AATTT
1 TAAATAATTT
52384932 TAAA
1 TAAA
52384936 AATAAGTTAT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
8 2 0.10
9 12 0.57
10 7 0.33
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (10 bp):
TAAATAATTT
Found at i:52384940 original size:20 final size:19
Alignment explanation
Indices: 52384891--52384940 Score: 59
Period size: 18 Copynumber: 2.6 Consensus size: 19
52384881 TATTTTAAAG
52384891 TTTTAAAAAATAATAAATAA
1 TTTT-AAAAATAATAAATAA
*
52384911 TTTTAAATAAT-TTAAA-AA
1 TTTTAAA-AATAATAAATAA
52384929 TTTTAAAAATAA
1 TTTTAAAAATAA
52384941 GTTATATATA
Statistics
Matches: 26, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
17 3 0.12
18 9 0.35
19 7 0.27
20 7 0.27
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (19 bp):
TTTTAAAAATAATAAATAA
Found at i:52387084 original size:3 final size:3
Alignment explanation
Indices: 52387076--52387119 Score: 88
Period size: 3 Copynumber: 14.7 Consensus size: 3
52387066 ATGTTATTAA
52387076 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
52387120 GAAATAAATA
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 41 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
ATT
Found at i:52387251 original size:23 final size:23
Alignment explanation
Indices: 52387224--52387269 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
52387214 TAAATTTTAA
*
52387224 GTGAAGGTATT-TATATATTATAT
1 GTGAAAGTATTATAT-TATTATAT
*
52387247 GTGAAATTATTATATTATTATAT
1 GTGAAAGTATTATATTATTATAT
52387270 TATATTAATA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 17 0.85
24 3 0.15
ACGTcount: A:0.37, C:0.00, G:0.13, T:0.50
Consensus pattern (23 bp):
GTGAAAGTATTATATTATTATAT
Found at i:52388057 original size:3 final size:3
Alignment explanation
Indices: 52388049--52388102 Score: 108
Period size: 3 Copynumber: 18.0 Consensus size: 3
52388039 GTGAGGTAAG
52388049 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
52388097 TAT TAT
1 TAT TAT
52388103 GAGTGAGAAT
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 51 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:52390730 original size:11 final size:12
Alignment explanation
Indices: 52390703--52390735 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
52390693 TATTTATAAA
52390703 ATAGAAAAATGC
1 ATAGAAAAATGC
*
52390715 ATAGAAAAATTC
1 ATAGAAAAATGC
52390727 -TAGAAAAAT
1 ATAGAAAAAT
52390736 AAAATCTTAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
11 9 0.45
12 11 0.55
ACGTcount: A:0.61, C:0.06, G:0.12, T:0.21
Consensus pattern (12 bp):
ATAGAAAAATGC
Found at i:52397709 original size:15 final size:14
Alignment explanation
Indices: 52397689--52397718 Score: 51
Period size: 15 Copynumber: 2.1 Consensus size: 14
52397679 ATAACCTTCT
52397689 AAATATTTATTATTA
1 AAATATTTA-TATTA
52397704 AAATATTTATATTA
1 AAATATTTATATTA
52397718 A
1 A
52397719 TCAAAATGAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 6 0.40
15 9 0.60
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (14 bp):
AAATATTTATATTA
Found at i:52399115 original size:57 final size:58
Alignment explanation
Indices: 52399044--52399156 Score: 142
Period size: 57 Copynumber: 2.0 Consensus size: 58
52399034 TAAATTGTTT
* *
52399044 AGGGTTGTCGATTTTGGG-ATTTTGGGTTTTGGGTGGTTTAA-TTTGGGGATTTTGGGTA
1 AGGGTTGTCGATTTTGGGAATTTT-GGTTTAGGGT-GTTTAATTTTGGAGATTTTGGGTA
* * *
52399102 AGGGTT-TTGATTTTGGGAATTTTTGTTTAGGGTTTTTAATTTTGGAGATTTTGGG
1 AGGGTTGTCGATTTTGGGAATTTTGGTTTAGGGTGTTTAATTTTGGAGATTTTGGG
52399157 GATTTCTCAC
Statistics
Matches: 48, Mismatches: 5, Indels: 5
0.83 0.09 0.09
Matches are distributed among these distances:
56 5 0.10
57 32 0.67
58 11 0.23
ACGTcount: A:0.14, C:0.01, G:0.35, T:0.50
Consensus pattern (58 bp):
AGGGTTGTCGATTTTGGGAATTTTGGTTTAGGGTGTTTAATTTTGGAGATTTTGGGTA
Found at i:52399138 original size:29 final size:28
Alignment explanation
Indices: 52399040--52399155 Score: 99
Period size: 29 Copynumber: 4.0 Consensus size: 28
52399030 ACCATAAATT
* *
52399040 GTTTAGGGTTGTCGATTTTGGGATTTTGG
1 GTTTAGGGTTTTTGATTTTGGGATTTT-G
* * * *
52399069 GTTTTGGGTGGTTTAATTTGGGGATTTTG
1 GTTTAGGGT-TTTTGATTTTGGGATTTTG
* * *
52399098 GGTAAGGG-TTTTGATTTTGGGAATTTTT
1 GTTTAGGGTTTTTGATTTTGGG-ATTTTG
*
52399126 GTTTAGGGTTTTTAATTTTGGAGATTTTG
1 GTTTAGGGTTTTTGATTTTGG-GATTTTG
52399155 G
1 G
52399156 GGATTTCTCA
Statistics
Matches: 66, Mismatches: 17, Indels: 8
0.73 0.19 0.09
Matches are distributed among these distances:
27 10 0.15
28 11 0.17
29 31 0.47
30 14 0.21
ACGTcount: A:0.14, C:0.01, G:0.34, T:0.51
Consensus pattern (28 bp):
GTTTAGGGTTTTTGATTTTGGGATTTTG
Found at i:52403315 original size:22 final size:22
Alignment explanation
Indices: 52403287--52403329 Score: 86
Period size: 22 Copynumber: 2.0 Consensus size: 22
52403277 GCAACTCGAG
52403287 ATAACTTAATTTGTGGTTTAAT
1 ATAACTTAATTTGTGGTTTAAT
52403309 ATAACTTAATTTGTGGTTTAA
1 ATAACTTAATTTGTGGTTTAA
52403330 CCTCATATCT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.33, C:0.05, G:0.14, T:0.49
Consensus pattern (22 bp):
ATAACTTAATTTGTGGTTTAAT
Found at i:52414955 original size:3 final size:3
Alignment explanation
Indices: 52414947--52414981 Score: 52
Period size: 3 Copynumber: 11.7 Consensus size: 3
52414937 TTTAATTGAT
* *
52414947 ATA ATA ATA ATA ATT ATA ATA ATA ATA ATG ATA AT
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
52414982 TTTAGTCCTC
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.60, C:0.00, G:0.03, T:0.37
Consensus pattern (3 bp):
ATA
Found at i:52414964 original size:15 final size:15
Alignment explanation
Indices: 52414946--52414981 Score: 63
Period size: 15 Copynumber: 2.4 Consensus size: 15
52414936 TTTTAATTGA
52414946 TATAATAATAATAAT
1 TATAATAATAATAAT
52414961 TATAATAATAATAAT
1 TATAATAATAATAAT
*
52414976 GATAAT
1 TATAAT
52414982 TTTAGTCCTC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.58, C:0.00, G:0.03, T:0.39
Consensus pattern (15 bp):
TATAATAATAATAAT
Found at i:52415985 original size:3 final size:3
Alignment explanation
Indices: 52415977--52416009 Score: 66
Period size: 3 Copynumber: 11.0 Consensus size: 3
52415967 CATTCCCATT
52415977 ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG
1 ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG
52416010 TTACAATTGA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.33, C:0.00, G:0.33, T:0.33
Consensus pattern (3 bp):
ATG
Found at i:52416421 original size:26 final size:28
Alignment explanation
Indices: 52416383--52416435 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 28
52416373 GGTAATTTTG
52416383 TTTCATTTGCTTAATCCATGAC-ATGCT
1 TTTCATTTGCTTAATCCATGACTATGCT
* *
52416410 TTTCA-TTGCTTAGTTCATGACTATGC
1 TTTCATTTGCTTAATCCATGACTATGC
52416436 AATGATTGTT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 14 0.61
27 9 0.39
ACGTcount: A:0.21, C:0.21, G:0.13, T:0.45
Consensus pattern (28 bp):
TTTCATTTGCTTAATCCATGACTATGCT
Found at i:52418962 original size:5 final size:5
Alignment explanation
Indices: 52418952--52418979 Score: 56
Period size: 5 Copynumber: 5.6 Consensus size: 5
52418942 TAACAAATTA
52418952 AAAAC AAAAC AAAAC AAAAC AAAAC AAA
1 AAAAC AAAAC AAAAC AAAAC AAAAC AAA
52418980 GTTACATTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.82, C:0.18, G:0.00, T:0.00
Consensus pattern (5 bp):
AAAAC
Found at i:52421888 original size:86 final size:86
Alignment explanation
Indices: 52421737--52421922 Score: 266
Period size: 86 Copynumber: 2.2 Consensus size: 86
52421727 GCCTCTATAA
*** *
52421737 AACATGACCTTTAGCGGCGCTTTTATCACAAACGCCGCTAAAGGTCATGCTCTTTAGCGATGCTT
1 AACATGACCTTTAGCGGCGCTTTTATCACAAACGCCGCTAAAAAACATGCTCTTTAGCGACGCTT
52421802 TACCCACAAACGCCGCTAAAG
66 TACCCACAAACGCCGCTAAAG
** * *
52421823 AACATGATTTTTAGCGGCGCTTTTATCACAAACGCCGCTAAAAAACATGAC-CTTTAGTGGCGCT
1 AACATGACCTTTAGCGGCGCTTTTATCACAAACGCCGCTAAAAAACATG-CTCTTTAGCGACGCT
**
52421887 TTACCTGCAAACGCCGCTAAAG
65 TTACCCACAAACGCCGCTAAAG
52421909 AACATGACCTTTAG
1 AACATGACCTTTAG
52421923 TCATTGCCTT
Statistics
Matches: 87, Mismatches: 12, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
86 86 0.99
87 1 0.01
ACGTcount: A:0.30, C:0.27, G:0.18, T:0.25
Consensus pattern (86 bp):
AACATGACCTTTAGCGGCGCTTTTATCACAAACGCCGCTAAAAAACATGCTCTTTAGCGACGCTT
TACCCACAAACGCCGCTAAAG
Found at i:52421923 original size:43 final size:43
Alignment explanation
Indices: 52421737--52421922 Score: 225
Period size: 43 Copynumber: 4.3 Consensus size: 43
52421727 GCCTCTATAA
*
52421737 AACATGACCTTTAGCGGCGCTTTTATCACAAACGCCGCTAAAG
1 AACATGACCTTTAGCGGCGCTTTTACCACAAACGCCGCTAAAG
** **
52421780 GTCATG-CTCTTTAGCGATGC-TTTACCCACAAACGCCGCTAAAG
1 AACATGAC-CTTTAGCGGCGCTTTTA-CCACAAACGCCGCTAAAG
** * *
52421823 AACATGATTTTTAGCGGCGCTTTTATCACAAACGCCGCTAAAA
1 AACATGACCTTTAGCGGCGCTTTTACCACAAACGCCGCTAAAG
* *
52421866 AACATGACCTTTAGTGGCGC-TTTACCTGCAAACGCCGCTAAAG
1 AACATGACCTTTAGCGGCGCTTTTACC-ACAAACGCCGCTAAAG
52421909 AACATGACCTTTAG
1 AACATGACCTTTAG
52421923 TCATTGCCTT
Statistics
Matches: 119, Mismatches: 19, Indels: 10
0.80 0.13 0.07
Matches are distributed among these distances:
42 10 0.08
43 105 0.88
44 4 0.03
ACGTcount: A:0.30, C:0.27, G:0.18, T:0.25
Consensus pattern (43 bp):
AACATGACCTTTAGCGGCGCTTTTACCACAAACGCCGCTAAAG
Found at i:52423512 original size:7 final size:7
Alignment explanation
Indices: 52423472--52423705 Score: 111
Period size: 7 Copynumber: 32.9 Consensus size: 7
52423462 ATTAATTAAT
52423472 CTAAACC
1 CTAAACC
52423479 CTAAATCC
1 CTAAA-CC
*
52423487 CTAACCC
1 CTAAACC
*
52423494 CT-ATCC
1 CTAAACC
52423500 CTTAAACC
1 C-TAAACC
*
52423508 CTAAATC
1 CTAAACC
* *
52423515 ATAAAAC
1 CTAAACC
*
52423522 ATAAACC
1 CTAAACC
52423529 CTAAACC
1 CTAAACC
*
52423536 CTAAACAT
1 CTAAAC-C
52423544 CT-AACC
1 CTAAACC
52423550 CTTAAACC
1 C-TAAACC
* *
52423558 TTAACCC
1 CTAAACC
*
52423565 CTAACCC
1 CTAAACC
52423572 CTAAACC
1 CTAAACC
*
52423579 TTAAATCC
1 CTAAA-CC
52423587 C--AACC
1 CTAAACC
52423592 CTTAAACC
1 C-TAAACC
*
52423600 ATAAACC
1 CTAAACC
*
52423607 ATAAACC
1 CTAAACC
* *
52423614 ATAATCC
1 CTAAACC
52423621 CTAAACC
1 CTAAACC
*
52423628 CGTAATCC
1 C-TAAACC
*
52423636 ATAAACC
1 CTAAACC
*
52423643 TTAAA--
1 CTAAACC
*
52423648 ATAGTAACTC
1 CTA--AAC-C
*
52423658 ATAAACC
1 CTAAACC
*
52423665 TTAAACC
1 CTAAACC
52423672 CTAAACC
1 CTAAACC
* *
52423679 ATATACC
1 CTAAACC
*
52423686 CTAAATC
1 CTAAACC
*
52423693 ATAAACC
1 CTAAACC
52423700 CTAAAC
1 CTAAAC
52423706 TATAATGATA
Statistics
Matches: 176, Mismatches: 35, Indels: 32
0.72 0.14 0.13
Matches are distributed among these distances:
5 5 0.03
6 7 0.04
7 131 0.74
8 30 0.17
10 3 0.02
ACGTcount: A:0.43, C:0.35, G:0.01, T:0.21
Consensus pattern (7 bp):
CTAAACC
Found at i:52424299 original size:113 final size:115
Alignment explanation
Indices: 52424013--52424378 Score: 416
Period size: 113 Copynumber: 3.3 Consensus size: 115
52424003 AATGTTTTTT
*
52424013 GCGGCGTTTTTCAAAAAGCGCCGCT-A----ACTATAGCTCAACATAAAACGACGGCGTTGTGCT
1 GCGGCGTTTTTCAAAAAGCGCCGCTAATGCCACTAAAGCTCAACATAAAACGACGGCGTTGTGCT
* * * *
52424073 TAATTTTTTGCGGCACTTTTTGAAAAATGCCGCTAATAGATTGAGA-AT-TA
66 TAATTTTTTGCGGCACTTTTTGGAAAACGCCGCT-ATAGA-TGCGACCTATA
* * ** * * ** *
52424123 GTGGCTTTTTTCAAAAAGCATCGTTAATTCCACTAAAGCTCAACATAAAACGGTGGCGCTGTGCT
1 GCGGCGTTTTTCAAAAAGCGCCGCTAATGCCACTAAAGCTCAACATAAAACGACGGCGTTGTGCT
* *
52424188 TAATTTTTTGCGGCGCTTCTTGGAAAACGCCG-T-TA-ATGGCGACCTATA
66 TAATTTTTTGCGGCACTTTTTGGAAAACGCCGCTATAGAT-GCGACCTATA
* * *
52424236 GCGGCGTTTTTCAAAAAGCGCCACTAATGCCACTAAAGCTCAAAATAAAACGACGACGTTGTGCT
1 GCGGCGTTTTTCAAAAAGCGCCGCTAATGCCACTAAAGCTCAACATAAAACGACGGCGTTGTGCT
* *
52424301 TAATTTTTTGCGGCAATTTTTGGAAAACACCGCTATAGAT-CG-CC-ATTA
66 TAATTTTTTGCGGCACTTTTTGGAAAACGCCGCTATAGATGCGACCTA-TA
52424349 GCGGCGTTTTTCAAAAAGCGCCGCTAATGC
1 GCGGCGTTTTTCAAAAAGCGCCGCTAATGC
52424379 TCGATCTATA
Statistics
Matches: 212, Mismatches: 32, Indels: 21
0.80 0.12 0.08
Matches are distributed among these distances:
110 21 0.10
111 5 0.02
112 4 0.02
113 116 0.55
114 4 0.02
115 60 0.28
116 2 0.01
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.29
Consensus pattern (115 bp):
GCGGCGTTTTTCAAAAAGCGCCGCTAATGCCACTAAAGCTCAACATAAAACGACGGCGTTGTGCT
TAATTTTTTGCGGCACTTTTTGGAAAACGCCGCTATAGATGCGACCTATA
Found at i:52425629 original size:3 final size:3
Alignment explanation
Indices: 52425621--52425653 Score: 66
Period size: 3 Copynumber: 11.0 Consensus size: 3
52425611 ATTAAACCTA
52425621 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
52425654 TAATGCCAAT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:52432832 original size:30 final size:30
Alignment explanation
Indices: 52432756--52432832 Score: 82
Period size: 30 Copynumber: 2.6 Consensus size: 30
52432746 TTAAAATGAG
* *
52432756 GCAACATAGCAGCAACATGCAAGCAACCAA
1 GCAACACAGCAGCAGCATGCAAGCAACCAA
* * * * *
52432786 GCAGCACAACATCAGCATGCAAGTAACCGA
1 GCAACACAGCAGCAGCATGCAAGCAACCAA
*
52432816 GCAACTCAGCAGCAGCA
1 GCAACACAGCAGCAGCA
52432833 GGCTAATGTC
Statistics
Matches: 36, Mismatches: 11, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
30 36 1.00
ACGTcount: A:0.42, C:0.31, G:0.19, T:0.08
Consensus pattern (30 bp):
GCAACACAGCAGCAGCATGCAAGCAACCAA
Found at i:52441202 original size:2 final size:2
Alignment explanation
Indices: 52441195--52441245 Score: 102
Period size: 2 Copynumber: 25.5 Consensus size: 2
52441185 NNNNNNATAC
52441195 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
52441237 TA TA TA TA T
1 TA TA TA TA T
52441246 TTATTTATTT
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 49 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:52441755 original size:26 final size:28
Alignment explanation
Indices: 52441720--52441772 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 28
52441710 GGTAATTTTC
52441720 TTTCATTTGCTTAATCCATGAC-ATGCT
1 TTTCATTTGCTTAATCCATGACTATGCT
* *
52441747 TTTCA-TTGCTTAGTTCATGACTATGC
1 TTTCATTTGCTTAATCCATGACTATGC
52441773 AATGATTGTT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 14 0.61
27 9 0.39
ACGTcount: A:0.21, C:0.21, G:0.13, T:0.45
Consensus pattern (28 bp):
TTTCATTTGCTTAATCCATGACTATGCT
Found at i:52444037 original size:15 final size:15
Alignment explanation
Indices: 52443963--52444055 Score: 59
Period size: 15 Copynumber: 6.3 Consensus size: 15
52443953 TAGGGTTGTG
52443963 GATTTTGGGGATTTT
1 GATTTTGGGGATTTT
* *
52443978 GGGTTTTGGGTGA-TCT
1 -GATTTTGGG-GATTTT
*
52443994 -AATTTGGGGATTTT
1 GATTTTGGGGATTTT
* **
52444008 GA-GTAAGGG-TTTT
1 GATTTTGGGGATTTT
52444021 GATTTTGGGGATTTT
1 GATTTTGGGGATTTT
* *
52444036 GATTTTAGGAATTTT
1 GATTTTGGGGATTTT
*
52444051 TATTT
1 GATTT
52444056 AGGGTTTTTA
Statistics
Matches: 58, Mismatches: 14, Indels: 11
0.70 0.17 0.13
Matches are distributed among these distances:
13 8 0.14
14 16 0.28
15 22 0.38
16 10 0.17
17 2 0.03
ACGTcount: A:0.17, C:0.01, G:0.31, T:0.51
Consensus pattern (15 bp):
GATTTTGGGGATTTT
Found at i:52446033 original size:2 final size:2
Alignment explanation
Indices: 52446020--52446057 Score: 67
Period size: 2 Copynumber: 19.0 Consensus size: 2
52446010 TTTTATCTTA
*
52446020 AT AT AC AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
52446058 TTACGTCTCA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:52448834 original size:50 final size:49
Alignment explanation
Indices: 52448741--52448919 Score: 137
Period size: 50 Copynumber: 3.6 Consensus size: 49
52448731 TTTCTTGTAT
* * * * * **
52448741 TGCCAATGCCATATCCCAGATATGGTCTTACATGAGAGTTCTCATATAGG
1 TGCCAATG-CATGTCCCAGACATGGTCTTAAAGGGGACCTCTCATATAGG
* * ** *
52448791 TGCCATTGACATCTCCCAGACATGGTCTTATGGGGGACCTCTCATCTTA-G
1 TGCCAATG-CATGTCCCAGACATGGTCTTAAAGGGGACCTCTCAT-ATAGG
* * * * *
52448841 TGCCAATGCAATGTCCCA-TCAAGGTCTTAAATGGGACCTCTCATCTTGG
1 TGCCAATGC-ATGTCCCAGACATGGTCTTAAAGGGGACCTCTCATATAGG
*
52448890 TGCCAACGCCATGTCCCAGACATGGTCTTA
1 TGCCAATG-CATGTCCCAGACATGGTCTTA
52448920 CATGGGATCT
Statistics
Matches: 101, Mismatches: 23, Indels: 10
0.75 0.17 0.07
Matches are distributed among these distances:
48 1 0.01
49 38 0.38
50 60 0.59
51 2 0.02
ACGTcount: A:0.24, C:0.27, G:0.21, T:0.28
Consensus pattern (49 bp):
TGCCAATGCATGTCCCAGACATGGTCTTAAAGGGGACCTCTCATATAGG
Found at i:52448882 original size:49 final size:50
Alignment explanation
Indices: 52448804--52448926 Score: 149
Period size: 49 Copynumber: 2.5 Consensus size: 50
52448794 CATTGACATC
* *** *
52448804 TCCCAGACATGGTCTTATGGGGGACCTCTCATCTTAGTGCCAATGCAATG
1 TCCCAGACAAGGTCTTAAATGGGACCTCTCATCTTAGTGCCAACGCAATG
* * *
52448854 TCCCA-TCAAGGTCTTAAATGGGACCTCTCATCTTGGTGCCAACGCCATG
1 TCCCAGACAAGGTCTTAAATGGGACCTCTCATCTTAGTGCCAACGCAATG
* *
52448903 TCCCAGACATGGTCTTACATGGGA
1 TCCCAGACAAGGTCTTAAATGGGA
52448927 TCTCATTCCC
Statistics
Matches: 61, Mismatches: 11, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
49 41 0.67
50 20 0.33
ACGTcount: A:0.23, C:0.28, G:0.23, T:0.27
Consensus pattern (50 bp):
TCCCAGACAAGGTCTTAAATGGGACCTCTCATCTTAGTGCCAACGCAATG
Found at i:52450250 original size:18 final size:18
Alignment explanation
Indices: 52450223--52450266 Score: 63
Period size: 18 Copynumber: 2.4 Consensus size: 18
52450213 TTTCTATGTC
*
52450223 TGTATTTGCATCTG-TATT
1 TGTATATGCATCTGAT-TT
52450241 TGTATATGCATCTGATTT
1 TGTATATGCATCTGATTT
52450259 TGTATATG
1 TGTATATG
52450267 AGATTGCATC
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
18 23 0.96
19 1 0.04
ACGTcount: A:0.20, C:0.09, G:0.18, T:0.52
Consensus pattern (18 bp):
TGTATATGCATCTGATTT
Found at i:52452504 original size:43 final size:43
Alignment explanation
Indices: 52452416--52452541 Score: 148
Period size: 43 Copynumber: 2.9 Consensus size: 43
52452406 GGCTCGCACA
* * * *
52452416 ATGCCAACGTCCTAGACATGGTCTTACATGTAATCACATACCG
1 ATGCCAACGTCCCAGACGTCGTCTTACATGTAAACACATACCG
*
52452459 ATG-CAACTGTCCCAGACGTCGTCTTACATGTAAACACA-AGTCG
1 ATGCCAAC-GTCCCAGACGTCGTCTTACATGTAAACACATA-CCG
* * *
52452502 ATGCCAACGTCCCAGACGTGGTCTTACACGAAAACACATA
1 ATGCCAACGTCCCAGACGTCGTCTTACATGTAAACACATA
52452542 TCGAAAATCC
Statistics
Matches: 71, Mismatches: 8, Indels: 7
0.83 0.09 0.08
Matches are distributed among these distances:
42 5 0.07
43 61 0.86
44 5 0.07
ACGTcount: A:0.32, C:0.29, G:0.17, T:0.22
Consensus pattern (43 bp):
ATGCCAACGTCCCAGACGTCGTCTTACATGTAAACACATACCG
Found at i:52462296 original size:16 final size:16
Alignment explanation
Indices: 52462265--52462310 Score: 51
Period size: 16 Copynumber: 2.9 Consensus size: 16
52462255 AAATTTTTTA
52462265 TTCA-TTTTTTTAAAT
1 TTCAGTTTTTTTAAAT
52462280 TTCAGTTTTATTT-AAT
1 TTCAGTTTT-TTTAAAT
* *
52462296 TTTAGTTTCTTTAAA
1 TTCAGTTTTTTTAAA
52462311 ATTTTCATTT
Statistics
Matches: 26, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
15 7 0.27
16 16 0.62
17 3 0.12
ACGTcount: A:0.26, C:0.07, G:0.04, T:0.63
Consensus pattern (16 bp):
TTCAGTTTTTTTAAAT
Found at i:52469966 original size:33 final size:35
Alignment explanation
Indices: 52469929--52470025 Score: 89
Period size: 33 Copynumber: 2.8 Consensus size: 35
52469919 ATGGTTATAT
52469929 TTAAATATTTAAAATATAATTTATATATT-C-TAA
1 TTAAATATTTAAAATATAATTTATATATTGCTTAA
* *
52469962 TTAAAT-TTTATAA-ATAATTAATATTTATTGCTTAA
1 TTAAATATTTAAAATATAATT--TATATATTGCTTAA
*
52469997 --AAATATTTAAAATTTATATTTCATATATT
1 TTAAATATTTAAAATATA-ATTT-ATATATT
52470026 AAAATATTAA
Statistics
Matches: 51, Mismatches: 5, Indels: 14
0.73 0.07 0.20
Matches are distributed among these distances:
31 6 0.12
32 6 0.12
33 17 0.33
34 8 0.16
35 11 0.22
36 3 0.06
ACGTcount: A:0.45, C:0.03, G:0.01, T:0.51
Consensus pattern (35 bp):
TTAAATATTTAAAATATAATTTATATATTGCTTAA
Found at i:52470218 original size:13 final size:13
Alignment explanation
Indices: 52470202--52470267 Score: 87
Period size: 13 Copynumber: 5.1 Consensus size: 13
52470192 TTTAAACCAA
52470202 ACTTTTCAAAAGC
1 ACTTTTCAAAAGC
* *
52470215 ACTTCTCAAAAAC
1 ACTTTTCAAAAGC
*
52470228 ACTTTTCAAAAAC
1 ACTTTTCAAAAGC
* *
52470241 ACTTTTCTACAGC
1 ACTTTTCAAAAGC
52470254 ACTTTTCAAAAGC
1 ACTTTTCAAAAGC
52470267 A
1 A
52470268 ATGAAGAACT
Statistics
Matches: 45, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
13 45 1.00
ACGTcount: A:0.39, C:0.26, G:0.05, T:0.30
Consensus pattern (13 bp):
ACTTTTCAAAAGC
Found at i:52470545 original size:82 final size:82
Alignment explanation
Indices: 52470403--52470588 Score: 175
Period size: 82 Copynumber: 2.2 Consensus size: 82
52470393 CTTTTTAAGA
* * *
52470403 AAAAACGCCACTAAAAATTAAAGTACTAAAGAGAAACGACATCGTTTTATTAAACTTTAATGCAT
1 AAAAACGCCACTAAAAATT-AAGTACTAAAGAGAAACGACATCGTTTTATGAAACATTAATACAT
*
52470468 -AGTT-CTGACGTTTT-CTG
65 CA-TTGC-GACGTTTTCCAG
* * * **
52470485 AAAAACGCCACTAAAAATTAATTACCTGAAGCGAAACGTTGAT-GTTTTGA-GAAACATTAATAC
1 AAAAACGCCACTAAAAATTAAGTA-CTAAAGAGAAACG-ACATCGTTTT-ATGAAACATTAATAC
*
52470548 ATCATTGCGGCGTTTTCCAG
63 ATCATTGCGACGTTTTCCAG
*
52470568 AAAAAAGCCACTAAAAGATTA
1 AAAAACGCCACTAAAA-ATTA
52470589 CATTCATGTT
Statistics
Matches: 86, Mismatches: 11, Indels: 12
0.79 0.10 0.11
Matches are distributed among these distances:
81 4 0.05
82 56 0.65
83 22 0.26
84 4 0.05
ACGTcount: A:0.41, C:0.17, G:0.15, T:0.27
Consensus pattern (82 bp):
AAAAACGCCACTAAAAATTAAGTACTAAAGAGAAACGACATCGTTTTATGAAACATTAATACATC
ATTGCGACGTTTTCCAG
Found at i:52475246 original size:38 final size:38
Alignment explanation
Indices: 52475195--52475272 Score: 138
Period size: 38 Copynumber: 2.1 Consensus size: 38
52475185 ACCACAATTA
*
52475195 TAAGGTCAATTTGCTATAATGCTTTCCGCTACAAGTTT
1 TAAGGTCAATTTGCTATAATGCTGTCCGCTACAAGTTT
*
52475233 TAAGGTCAATTTGCTATAATGCTGTCCGCTGCAAGTTT
1 TAAGGTCAATTTGCTATAATGCTGTCCGCTACAAGTTT
52475271 TA
1 TA
52475273 TTGAAATTTT
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.26, C:0.18, G:0.18, T:0.38
Consensus pattern (38 bp):
TAAGGTCAATTTGCTATAATGCTGTCCGCTACAAGTTT
Found at i:52476451 original size:51 final size:50
Alignment explanation
Indices: 52476381--52476554 Score: 200
Period size: 51 Copynumber: 3.5 Consensus size: 50
52476371 AGTAAACAGT
* * *
52476381 AATCAGTAACGGTAGCAGTAACAGTAACAATATTCAACACACAAAGTGCTG
1 AATCAGTAACAGTAACAGTAACAGTAAC-ATATTCGACACACAAAGTGCTG
* *
52476432 AATCTGTAACAGTAACAGTAACAG-----TATTCGACACACAAAGTGCCG
1 AATCAGTAACAGTAACAGTAACAGTAACATATTCGACACACAAAGTGCTG
*
52476477 AATC-GATAACAGTAACAGTAACAGTAACAGTATTCGACACATAAAGTG-TCG
1 AATCAG-TAACAGTAACAGTAACAGTAACA-TATTCGACACACAAAGTGCT-G
52476528 AATCAGTAATCAGTAACAGTAACAGTA
1 AATCAGTAA-CAGTAACAGTAACAGTA
52476555 GTCGGCACAT
Statistics
Matches: 106, Mismatches: 7, Indels: 19
0.80 0.05 0.14
Matches are distributed among these distances:
44 1 0.01
45 41 0.39
51 46 0.43
52 18 0.17
ACGTcount: A:0.43, C:0.19, G:0.17, T:0.21
Consensus pattern (50 bp):
AATCAGTAACAGTAACAGTAACAGTAACATATTCGACACACAAAGTGCTG
Found at i:52476460 original size:45 final size:45
Alignment explanation
Indices: 52476396--52476563 Score: 194
Period size: 45 Copynumber: 3.6 Consensus size: 45
52476386 GTAACGGTAG
* *
52476396 CAGTAACAGTAACAATATTCAACACACAAAGTGCTGAATCTGTAA
1 CAGTAACAGTAACAGTATTCGACACACAAAGTGCTGAATCTGTAA
*
52476441 CAGTAACAGTAACAGTATTCGACACACAAAGTGCCGAATCGATAACAGTAA
1 CAGTAACAGTAACAGTATTCGACACACAAAGTGCTGAATC--T----GTAA
* *
52476492 CAGTAACAGTAACAGTATTCGACACATAAAGTG-TCGAATCAGTAA
1 CAGTAACAGTAACAGTATTCGACACACAAAGTGCT-GAATCTGTAA
* *
52476537 TCAGTAACAGTAACAGTAGTCGGCACA
1 -CAGTAACAGTAACAGTATTCGACACA
52476564 TAAGTACCTA
Statistics
Matches: 107, Mismatches: 8, Indels: 15
0.82 0.06 0.12
Matches are distributed among these distances:
45 41 0.38
46 24 0.22
47 1 0.01
51 41 0.38
ACGTcount: A:0.42, C:0.20, G:0.17, T:0.20
Consensus pattern (45 bp):
CAGTAACAGTAACAGTATTCGACACACAAAGTGCTGAATCTGTAA
Found at i:52476494 original size:6 final size:6
Alignment explanation
Indices: 52476483--52476508 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
52476473 GCCGAATCGA
52476483 TAACAG TAACAG TAACAG TAACAG TA
1 TAACAG TAACAG TAACAG TAACAG TA
52476509 TTCGACACAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.50, C:0.15, G:0.15, T:0.19
Consensus pattern (6 bp):
TAACAG
Found at i:52479052 original size:18 final size:20
Alignment explanation
Indices: 52479022--52479067 Score: 60
Period size: 19 Copynumber: 2.4 Consensus size: 20
52479012 ATAAAATAAA
*
52479022 TTCAAAATAATTT-TTAAAT
1 TTCAAAATAATTTATAAAAT
*
52479041 TTTAAAAT-ATTTATAAAAT
1 TTCAAAATAATTTATAAAAT
52479060 TTCAAAAT
1 TTCAAAAT
52479068 TTATATTTAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
18 4 0.17
19 19 0.83
ACGTcount: A:0.50, C:0.04, G:0.00, T:0.46
Consensus pattern (20 bp):
TTCAAAATAATTTATAAAAT
Found at i:52479080 original size:14 final size:16
Alignment explanation
Indices: 52479041--52479100 Score: 52
Period size: 18 Copynumber: 3.6 Consensus size: 16
52479031 ATTTTTAAAT
*
52479041 TTTAAAATATTTATAAAA
1 TTTAAAA-A-TTATAATA
*
52479059 TTTCAAAATT-T-ATA
1 TTTAAAAATTATAATA
52479073 TTTAAAAAATTATAAATA
1 TTT-AAAAATTAT-AATA
52479091 TTTAAAAATT
1 TTTAAAAATT
52479101 CTAAAAATAT
Statistics
Matches: 35, Mismatches: 3, Indels: 9
0.74 0.06 0.19
Matches are distributed among these distances:
14 5 0.14
15 7 0.20
16 3 0.09
17 8 0.23
18 12 0.34
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.45
Consensus pattern (16 bp):
TTTAAAAATTATAATA
Found at i:52480668 original size:22 final size:22
Alignment explanation
Indices: 52480640--52480684 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
52480630 ATGTCTTAGA
52480640 ATGCTCGAAAAACTTACAAATT
1 ATGCTCGAAAAACTTACAAATT
52480662 ATGCTCGAAAAACTTACAAATT
1 ATGCTCGAAAAACTTACAAATT
52480684 A
1 A
52480685 CGATTTTTTG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.47, C:0.18, G:0.09, T:0.27
Consensus pattern (22 bp):
ATGCTCGAAAAACTTACAAATT
Found at i:52483865 original size:107 final size:107
Alignment explanation
Indices: 52483671--52483882 Score: 343
Period size: 107 Copynumber: 2.0 Consensus size: 107
52483661 CTTCGAAGTT
* * *
52483671 TTAAGAGGATATTTGGCTATTTAGTCGAACGAGAAATTGAAACCCAGCACGTTAGGGCACGTTTT
1 TTAAAAGGATATTTGGCTATTTAGTCGAACGAGAAATCGAAACCCAGCACGTTAGGGCACATTTT
52483736 CTCGAGTTTCCAAACACAAAATATCGCCTTATTTAGAAAATC
66 CTCGAGTTTCCAAACACAAAATATCGCCTTATTTAGAAAATC
* *
52483778 TTAAAAGGATATTTGGCTATTTGGTCGAACGAGAAATCGAAACCCAGCGCGTTAGGGCACATTTT
1 TTAAAAGGATATTTGGCTATTTAGTCGAACGAGAAATCGAAACCCAGCACGTTAGGGCACATTTT
* ** *
52483843 CTCGATTTTCCAAACATGAAATATTGCCTTATTTAGAAAA
66 CTCGAGTTTCCAAACACAAAATATCGCCTTATTTAGAAAA
52483883 ACCTTCCTTT
Statistics
Matches: 96, Mismatches: 9, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
107 96 1.00
ACGTcount: A:0.33, C:0.18, G:0.19, T:0.30
Consensus pattern (107 bp):
TTAAAAGGATATTTGGCTATTTAGTCGAACGAGAAATCGAAACCCAGCACGTTAGGGCACATTTT
CTCGAGTTTCCAAACACAAAATATCGCCTTATTTAGAAAATC
Found at i:52490832 original size:40 final size:40
Alignment explanation
Indices: 52490787--52490880 Score: 129
Period size: 40 Copynumber: 2.4 Consensus size: 40
52490777 TTTAGCAACA
*
52490787 TTTTTGAAAAAGCGAC-GCT-AATTCTCTATTTTTAGCGGCG
1 TTTTTGAAAAAGCG-CTG-TGAATGCTCTATTTTTAGCGGCG
*
52490827 TTTTTGAAGAAGCGCTGTGAATGCTCTATTTTTAGCGGCG
1 TTTTTGAAAAAGCGCTGTGAATGCTCTATTTTTAGCGGCG
*
52490867 TTTTTAAAAAAGCG
1 TTTTTGAAAAAGCG
52490881 TCGCAATAAA
Statistics
Matches: 48, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
39 2 0.04
40 46 0.96
ACGTcount: A:0.26, C:0.15, G:0.22, T:0.37
Consensus pattern (40 bp):
TTTTTGAAAAAGCGCTGTGAATGCTCTATTTTTAGCGGCG
Found at i:52492057 original size:19 final size:18
Alignment explanation
Indices: 52492030--52492066 Score: 56
Period size: 19 Copynumber: 2.0 Consensus size: 18
52492020 TAATATATAT
52492030 ATTAAAATATTAAAATAA
1 ATTAAAATATTAAAATAA
*
52492048 ATTAACAATATTGAAATAA
1 ATTAA-AATATTAAAATAA
52492067 GTTGAAATGA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 5 0.29
19 12 0.71
ACGTcount: A:0.62, C:0.03, G:0.03, T:0.32
Consensus pattern (18 bp):
ATTAAAATATTAAAATAA
Found at i:52493199 original size:43 final size:43
Alignment explanation
Indices: 52493139--52493229 Score: 130
Period size: 43 Copynumber: 2.1 Consensus size: 43
52493129 CTTTGAGTTC
* * *
52493139 ATTA-CAAGATTTCCTTGATTAAGTAAATGTATTATATCTTTT
1 ATTACCAAGATTTACTTGATTAAGAAAATGCATTATATCTTTT
* *
52493181 ATTACCAAGATTTACTTGATTAAGAAAATGCATTGTATGTTTT
1 ATTACCAAGATTTACTTGATTAAGAAAATGCATTATATCTTTT
52493224 ATTACC
1 ATTACC
52493230 TTGCATATGT
Statistics
Matches: 43, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
42 4 0.09
43 39 0.91
ACGTcount: A:0.34, C:0.11, G:0.11, T:0.44
Consensus pattern (43 bp):
ATTACCAAGATTTACTTGATTAAGAAAATGCATTATATCTTTT
Found at i:52493691 original size:42 final size:43
Alignment explanation
Indices: 52493630--52493737 Score: 157
Period size: 42 Copynumber: 2.5 Consensus size: 43
52493620 ATAAAAACGT
* *
52493630 CGCTAAAGGTCATGTTCTTTAGTGGCGTTTGTGGT-AAAA-TGC
1 CGCTAAAGGTCATGTTCTTTAGCGGCGTTT-TGGTCAAAAGTCC
* *
52493672 CGCTAAAGGTCATGCTCTTTAGCGGCGTTTTTGTCAAAAGTCC
1 CGCTAAAGGTCATGTTCTTTAGCGGCGTTTTGGTCAAAAGTCC
52493715 CGCTAAAGGTCATGTTCTTTAGC
1 CGCTAAAGGTCATGTTCTTTAGC
52493738 AGCATTTTTT
Statistics
Matches: 59, Mismatches: 5, Indels: 3
0.88 0.07 0.04
Matches are distributed among these distances:
41 3 0.05
42 32 0.54
43 24 0.41
ACGTcount: A:0.21, C:0.19, G:0.25, T:0.34
Consensus pattern (43 bp):
CGCTAAAGGTCATGTTCTTTAGCGGCGTTTTGGTCAAAAGTCC
Found at i:52496140 original size:19 final size:17
Alignment explanation
Indices: 52496103--52496136 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
52496093 GCCTTCGGTA
*
52496103 AAAGTAAAGAAAATTTC
1 AAAGTAAAAAAAATTTC
52496120 AAAGTAAAAAATAATTT
1 AAAGTAAAAAA-AATTT
52496137 TCAAGAAATG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 10 0.67
18 5 0.33
ACGTcount: A:0.62, C:0.03, G:0.09, T:0.26
Consensus pattern (17 bp):
AAAGTAAAAAAAATTTC
Found at i:52501335 original size:15 final size:15
Alignment explanation
Indices: 52501315--52501344 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
52501305 TAACCAAATC
52501315 GAATTAGTATTAACT
1 GAATTAGTATTAACT
52501330 GAATTAGTATTAACT
1 GAATTAGTATTAACT
52501345 AAATCGAAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.40, C:0.07, G:0.13, T:0.40
Consensus pattern (15 bp):
GAATTAGTATTAACT
Found at i:52502318 original size:17 final size:17
Alignment explanation
Indices: 52502298--52502357 Score: 52
Period size: 18 Copynumber: 3.5 Consensus size: 17
52502288 ATTTTTATTG
*
52502298 TTCATTTTTTTTAAAAT
1 TTCATTTTATTTAAAAT
52502315 TTCAATTTTATTT--AAT
1 TTC-ATTTTATTTAAAAT
* * *
52502331 TTTAGTTTCTTTAAAATT
1 TTCATTTTATTTAAAA-T
52502349 TTCATTTTA
1 TTCATTTTA
52502358 AAATTAGCTA
Statistics
Matches: 32, Mismatches: 7, Indels: 7
0.70 0.15 0.15
Matches are distributed among these distances:
15 7 0.22
16 5 0.16
17 5 0.16
18 15 0.47
ACGTcount: A:0.28, C:0.07, G:0.02, T:0.63
Consensus pattern (17 bp):
TTCATTTTATTTAAAAT
Found at i:52504598 original size:132 final size:132
Alignment explanation
Indices: 52504429--52504675 Score: 336
Period size: 132 Copynumber: 1.9 Consensus size: 132
52504419 CAACTTCAAG
* *
52504429 GAGATAGGAATTCTGGCTTCAATGTACTCCACTGTAACCTCAAGGAGGTAAAATCTGCCATCCTC
1 GAGATAGGAATTCTGGCTTCAATATACTCCACTGTAACCTCAAGGAGGTAAAATCCGCCATCCTC
* *
52504494 GATCTACTCCACTACCG-TCTAGGGAGATAAGTTTTATTATCTTTAATCTATTCCACTGGTGCCC
66 GATCTACTCCACTACCGCT-TAGGGAGATAAGATCTATTATCTTTAATCTATTCCACTGGTGCCC
52504558 AGT
130 AGT
* * *
52504561 GAGATA-GAATTACTGGCTTCAATATACTCTATTGTAACCTCAGGGAGGTAAAATCCGCCATCCT
1 GAGATAGGAATT-CTGGCTTCAATATACTCCACTGTAACCTCAAGGAGGTAAAATCCGCCATCCT
* * * * * * *
52504625 TGATCTGCTTCATTACTGCTTAGGGAGATAAGATCTGTTATCTTTGATCTA
65 CGATCTACTCCACTACCGCTTAGGGAGATAAGATCTATTATCTTTAATCTA
52504676 CTTCACGCCA
Statistics
Matches: 99, Mismatches: 14, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
131 5 0.05
132 93 0.94
133 1 0.01
ACGTcount: A:0.27, C:0.22, G:0.19, T:0.32
Consensus pattern (132 bp):
GAGATAGGAATTCTGGCTTCAATATACTCCACTGTAACCTCAAGGAGGTAAAATCCGCCATCCTC
GATCTACTCCACTACCGCTTAGGGAGATAAGATCTATTATCTTTAATCTATTCCACTGGTGCCCA
GT
Found at i:52504805 original size:89 final size:89
Alignment explanation
Indices: 52504654--52505164 Score: 772
Period size: 89 Copynumber: 5.8 Consensus size: 89
52504644 TTAGGGAGAT
*
52504654 AAGATCTGTTATCTTTGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTTCGATCT
1 AAGATCTGCTATCTTTGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTTCGATCT
*
52504719 GCTTCGCCACCAGTATGGGAAGAC
66 ACTTCGCCACCAGTATGGGAAGAC
* *
52504743 AAGATCTGGTATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTTCGATCT
1 AAGATCTGCTATCTTTGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTTCGATCT
* *
52504808 ATTTCACCACCAGTATGGGAAGAC
66 ACTTCGCCACCAGTATGGGAAGAC
* * *
52504832 AAGATCTGCTATCTTTGATCTACTTCACTCCAATACATGAAGATAAGATCTGTTTTCTTCGATCT
1 AAGATCTGCTATCTTTGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTTCGATCT
*
52504897 ACTTTGCCACCAGTATGGGAAGAC
66 ACTTCGCCACCAGTATGGGAAGAC
* * * * *
52504921 AAGATCTACTATCTTTGATCTACTTCACGCCAATACATGAAGACAAGATATGTTTTCTTTGACCT
1 AAGATCTGCTATCTTTGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTTCGATCT
52504986 ACTTCGCCACCAGTATGGGAAGAC
66 ACTTCGCCACCAGTATGGGAAGAC
* *
52505010 AAGATCTGCTATCTTTGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTATCTTTGATCT
1 AAGATCTGCTATCTTTGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTTCGATCT
* * ***
52505075 ACTTC-ACACCAATACATGAAGAC
66 ACTTCGCCACCAGTATGGGAAGAC
* * * * *
52505098 AAGATCCGTTTTCTTTGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTATCTTTGATCT
1 AAGATCTGCTATCTTTGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTTCGATCT
52505163 AC
66 AC
52505165 CTCACGCCAA
Statistics
Matches: 389, Mismatches: 33, Indels: 1
0.92 0.08 0.00
Matches are distributed among these distances:
88 77 0.20
89 312 0.80
ACGTcount: A:0.29, C:0.24, G:0.15, T:0.31
Consensus pattern (89 bp):
AAGATCTGCTATCTTTGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTTCGATCT
ACTTCGCCACCAGTATGGGAAGAC
Found at i:52505194 original size:44 final size:44
Alignment explanation
Indices: 52504654--52505195 Score: 582
Period size: 44 Copynumber: 12.2 Consensus size: 44
52504644 TTAGGGAGAT
*
52504654 AAGATCTGTTATCTTTGATCTACTTCACGCCAATACATGAAGAC
1 AAGATCTGCTATCTTTGATCTACTTCACGCCAATACATGAAGAC
* * * * * * ***
52504698 AAGATCTGCTTTCTTCGATCTGCTTCGCCACCAGTATGGGAAGAC
1 AAGATCTGCTATCTTTGATCTACTTC-ACGCCAATACATGAAGAC
* *
52504743 AAGATCTGGTATCTTCGATCTACTTCACGCCAATACATGAAGAC
1 AAGATCTGCTATCTTTGATCTACTTCACGCCAATACATGAAGAC
* * * * * ***
52504787 AAGATCTGCTTTCTTCGATCTATTTCACCACCAGTATGGGAAGAC
1 AAGATCTGCTATCTTTGATCTACTTCA-CGCCAATACATGAAGAC
* *
52504832 AAGATCTGCTATCTTTGATCTACTTCACTCCAATACATGAAGAT
1 AAGATCTGCTATCTTTGATCTACTTCACGCCAATACATGAAGAC
* * * * * ***
52504876 AAGATCTGTTTTCTTCGATCTACTTTGC-CACCAGTATGGGAAGAC
1 AAGATCTGCTATCTTTGATCTAC-TT-CACGCCAATACATGAAGAC
*
52504921 AAGATCTACTATCTTTGATCTACTTCACGCCAATACATGAAGAC
1 AAGATCTGCTATCTTTGATCTACTTCACGCCAATACATGAAGAC
* * * * * * * ***
52504965 AAGATATGTTTTCTTTGACCTACTTCGCCACCAGTATGGGAAGAC
1 AAGATCTGCTATCTTTGATCTACTTC-ACGCCAATACATGAAGAC
52505010 AAGATCTGCTATCTTTGATCTACTTCACGCCAATACATGAAGAC
1 AAGATCTGCTATCTTTGATCTACTTCACGCCAATACATGAAGAC
*
52505054 AAGATCTGCTATCTTTGATCTACTTCACACCAATACATGAAGAC
1 AAGATCTGCTATCTTTGATCTACTTCACGCCAATACATGAAGAC
* * *
52505098 AAGATCCGTTTTCTTTGATCTACTTCACGCCAATACATGAAGAC
1 AAGATCTGCTATCTTTGATCTACTTCACGCCAATACATGAAGAC
* * * * *
52505142 AAGATCTGCTATCTTTGATCTACCTCACGCCAATTCATAAAAAT
1 AAGATCTGCTATCTTTGATCTACTTCACGCCAATACATGAAGAC
52505186 AAGATCTGCT
1 AAGATCTGCT
52505196 GCTTTTCAAC
Statistics
Matches: 404, Mismatches: 88, Indels: 12
0.80 0.17 0.02
Matches are distributed among these distances:
43 1 0.00
44 265 0.66
45 137 0.34
46 1 0.00
ACGTcount: A:0.30, C:0.24, G:0.15, T:0.31
Consensus pattern (44 bp):
AAGATCTGCTATCTTTGATCTACTTCACGCCAATACATGAAGAC
Found at i:52509342 original size:19 final size:20
Alignment explanation
Indices: 52509318--52509357 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 20
52509308 AAAGGTGTCT
* *
52509318 AATGCACATG-ATGTAATGA
1 AATGCAAATGCATGAAATGA
52509337 AATGCAAATGCATGAAATGA
1 AATGCAAATGCATGAAATGA
52509357 A
1 A
52509358 TGTAAAAAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 9 0.50
20 9 0.50
ACGTcount: A:0.47, C:0.10, G:0.20, T:0.23
Consensus pattern (20 bp):
AATGCAAATGCATGAAATGA
Found at i:52518020 original size:15 final size:15
Alignment explanation
Indices: 52518000--52518029 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
52517990 TAACCAAATC
52518000 GAATTAGTATTAACT
1 GAATTAGTATTAACT
52518015 GAATTAGTATTAACT
1 GAATTAGTATTAACT
52518030 AAATCGAAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.40, C:0.07, G:0.13, T:0.40
Consensus pattern (15 bp):
GAATTAGTATTAACT
Found at i:52518481 original size:23 final size:22
Alignment explanation
Indices: 52518455--52518515 Score: 59
Period size: 23 Copynumber: 2.6 Consensus size: 22
52518445 AAAGGGGTTA
*
52518455 TAAAGAGATGAAAGTTTAAAGAT
1 TAAAGAGATGAAAGATT-AAGAT
* *
52518478 TAAAGAAAATGAAAGATTAAGGT
1 TAAAG-AGATGAAAGATTAAGAT
*
52518501 CAAGAGAGATGAAAG
1 TAA-AGAGATGAAAG
52518516 GTGAAAGGTT
Statistics
Matches: 31, Mismatches: 5, Indels: 4
0.77 0.12 0.10
Matches are distributed among these distances:
23 19 0.61
24 12 0.39
ACGTcount: A:0.54, C:0.02, G:0.25, T:0.20
Consensus pattern (22 bp):
TAAAGAGATGAAAGATTAAGAT
Found at i:52519031 original size:17 final size:17
Alignment explanation
Indices: 52518982--52519039 Score: 61
Period size: 17 Copynumber: 3.5 Consensus size: 17
52518972 AATTTTATTG
52518982 TTCA-TTTTTTAAAATT
1 TTCAGTTTTTTAAAATT
*
52518998 TTCAGTTTTATT-TAATT
1 TTCAGTTTT-TTAAAATT
52519015 TT-AGTTTGTTTAAAATT
1 TTCAGTTT-TTTAAAATT
52519032 TTCA-TTTT
1 TTCAGTTTT
52519040 AAAATTAGCT
Statistics
Matches: 35, Mismatches: 2, Indels: 10
0.74 0.04 0.21
Matches are distributed among these distances:
16 12 0.34
17 20 0.57
18 3 0.09
ACGTcount: A:0.26, C:0.05, G:0.05, T:0.64
Consensus pattern (17 bp):
TTCAGTTTTTTAAAATT
Found at i:52520449 original size:22 final size:24
Alignment explanation
Indices: 52520423--52520466 Score: 74
Period size: 24 Copynumber: 1.9 Consensus size: 24
52520413 GAAAAATATT
52520423 AAATAT-ATA-TTTTTTATTTTTA
1 AAATATAATAGTTTTTTATTTTTA
52520445 AAATATAATAGTTTTTTATTTT
1 AAATATAATAGTTTTTTATTTT
52520467 AAGTTTATTT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
22 6 0.30
23 3 0.15
24 11 0.55
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.61
Consensus pattern (24 bp):
AAATATAATAGTTTTTTATTTTTA
Found at i:52520577 original size:9 final size:9
Alignment explanation
Indices: 52520563--52520590 Score: 56
Period size: 9 Copynumber: 3.1 Consensus size: 9
52520553 TTTTGTTACA
52520563 ACAATTAAT
1 ACAATTAAT
52520572 ACAATTAAT
1 ACAATTAAT
52520581 ACAATTAAT
1 ACAATTAAT
52520590 A
1 A
52520591 ATTTGATAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.57, C:0.11, G:0.00, T:0.32
Consensus pattern (9 bp):
ACAATTAAT
Found at i:52520612 original size:68 final size:68
Alignment explanation
Indices: 52520533--52520742 Score: 370
Period size: 68 Copynumber: 3.1 Consensus size: 68
52520523 TCAAGTTTGT
*
52520533 TTTACTAATCAAATGTTAGATTTTGTTACAACAATTAATACAATTAATACAATTAATAATTTGAT
1 TTTACTAATCAAATGTTAGATTTTATTACAACAATTAATACAATTAATACAATTAATAATTTGAT
52520598 AAA
66 AAA
* *
52520601 TTTAGTAATCAAATGTTAGATTTTATTACAACAATTAATACAATTAATACAATTAATATTTTGAT
1 TTTACTAATCAAATGTTAGATTTTATTACAACAATTAATACAATTAATACAATTAATAATTTGAT
52520666 AAA
66 AAA
52520669 TTTACTAATCAAATGTTAGATTTTATTACAACAATTAATACAATT-A-ACAATTAATAATTTGAT
1 TTTACTAATCAAATGTTAGATTTTATTACAACAATTAATACAATTAATACAATTAATAATTTGAT
*
52520732 AAT
66 AAA
52520735 TTTACTAA
1 TTTACTAA
52520743 CAATTAATTT
Statistics
Matches: 136, Mismatches: 6, Indels: 2
0.94 0.04 0.01
Matches are distributed among these distances:
66 26 0.19
67 1 0.01
68 109 0.80
ACGTcount: A:0.45, C:0.09, G:0.05, T:0.41
Consensus pattern (68 bp):
TTTACTAATCAAATGTTAGATTTTATTACAACAATTAATACAATTAATACAATTAATAATTTGAT
AAA
Found at i:52520643 original size:9 final size:9
Alignment explanation
Indices: 52520631--52520658 Score: 56
Period size: 9 Copynumber: 3.1 Consensus size: 9
52520621 TTTTATTACA
52520631 ACAATTAAT
1 ACAATTAAT
52520640 ACAATTAAT
1 ACAATTAAT
52520649 ACAATTAAT
1 ACAATTAAT
52520658 A
1 A
52520659 TTTTGATAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.57, C:0.11, G:0.00, T:0.32
Consensus pattern (9 bp):
ACAATTAAT
Found at i:52520752 original size:16 final size:16
Alignment explanation
Indices: 52520731--52520772 Score: 66
Period size: 16 Copynumber: 2.6 Consensus size: 16
52520721 AATAATTTGA
*
52520731 TAATTTTACTAACAAT
1 TAATTTTAATAACAAT
52520747 TAATTTTAATAACAAT
1 TAATTTTAATAACAAT
*
52520763 TAGTTTTAAT
1 TAATTTTAAT
52520773 TTTATTAAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 24 1.00
ACGTcount: A:0.43, C:0.07, G:0.02, T:0.48
Consensus pattern (16 bp):
TAATTTTAATAACAAT
Found at i:52520756 original size:22 final size:23
Alignment explanation
Indices: 52520746--52520801 Score: 69
Period size: 23 Copynumber: 2.5 Consensus size: 23
52520736 TTACTAACAA
* * *
52520746 TTAATTTTAAT-AACAATTAGTT
1 TTAATTTTAATAAAAAAATAATT
*
52520768 TTAATTTTATTAAAAAAATAATT
1 TTAATTTTAATAAAAAAATAATT
52520791 TTAATTTTAAT
1 TTAATTTTAAT
52520802 TTTAATTAAA
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
22 10 0.36
23 18 0.64
ACGTcount: A:0.45, C:0.02, G:0.02, T:0.52
Consensus pattern (23 bp):
TTAATTTTAATAAAAAAATAATT
Found at i:52526325 original size:30 final size:30
Alignment explanation
Indices: 52526291--52526350 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
52526281 ACTGTAATGT
*
52526291 TTGGTTACTTGCATGCTGCAGTTGTGTTGC
1 TTGGTTACTTGCATGCTGCAGCTGTGTTGC
* *
52526321 TTGGTTTCTTGCATGCTGCTGCTGTGTTGC
1 TTGGTTACTTGCATGCTGCAGCTGTGTTGC
52526351 CACCTTTTAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.07, C:0.18, G:0.30, T:0.45
Consensus pattern (30 bp):
TTGGTTACTTGCATGCTGCAGCTGTGTTGC
Found at i:52548066 original size:17 final size:17
Alignment explanation
Indices: 52548037--52548069 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
52548027 TTATATTATG
52548037 TTATTAGTTTTGTATTA
1 TTATTAGTTTTGTATTA
52548054 TTATT-GTTATTGTATT
1 TTATTAGTT-TTGTATT
52548070 TCTATTCTAT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 3 0.20
17 12 0.80
ACGTcount: A:0.21, C:0.00, G:0.12, T:0.67
Consensus pattern (17 bp):
TTATTAGTTTTGTATTA
Found at i:52548199 original size:2 final size:2
Alignment explanation
Indices: 52548187--52548280 Score: 50
Period size: 2 Copynumber: 46.5 Consensus size: 2
52548177 ACATATCCAC
* * * *
52548187 AT AT AT TT AT AT AT AT AT TT TT AT AT TT CAT GAT AGT -T AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT -AT -AT A-T AT AT AT
* * * * *
52548229 AT GT AT AT AT AT GT AC AT GT TT ACT -T AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT A-T AT AT AT AT AT AT AT AT AT
52548271 AT AT -T AT AT A
1 AT AT AT AT AT A
52548281 ATAATTTTAG
Statistics
Matches: 70, Mismatches: 16, Indels: 12
0.71 0.16 0.12
Matches are distributed among these distances:
1 3 0.04
2 62 0.89
3 5 0.07
ACGTcount: A:0.38, C:0.03, G:0.05, T:0.53
Consensus pattern (2 bp):
AT
Found at i:52552506 original size:26 final size:28
Alignment explanation
Indices: 52552471--52552523 Score: 92
Period size: 26 Copynumber: 2.0 Consensus size: 28
52552461 GGTAATTTTC
52552471 TTTCATTTGCTTCATTCATGAC-ATGCT
1 TTTCATTTGCTTCATTCATGACTATGCT
52552498 TTTC-TTTGCTTCATTCATGACTATGC
1 TTTCATTTGCTTCATTCATGACTATGC
52552524 AATGATTGTT
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 17 0.68
27 8 0.32
ACGTcount: A:0.17, C:0.23, G:0.11, T:0.49
Consensus pattern (28 bp):
TTTCATTTGCTTCATTCATGACTATGCT
Found at i:52554714 original size:2 final size:2
Alignment explanation
Indices: 52554707--52554733 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
52554697 TCTTTGGCTC
52554707 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
52554734 ATAAAATTTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:52561788 original size:14 final size:14
Alignment explanation
Indices: 52561769--52561797 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
52561759 TCATGCATAA
52561769 ATGAAAATGTTCCG
1 ATGAAAATGTTCCG
52561783 ATGAAAATGTTCCG
1 ATGAAAATGTTCCG
52561797 A
1 A
52561798 CATGGTCAAG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.38, C:0.14, G:0.21, T:0.28
Consensus pattern (14 bp):
ATGAAAATGTTCCG
Found at i:52564941 original size:21 final size:22
Alignment explanation
Indices: 52564912--52564952 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
52564902 CAAAAAGAAC
* *
52564912 AGATATGATTAGAATTAATATT
1 AGATATGATCAAAATTAATATT
52564934 AGAT-TGATCAAAATTAATA
1 AGATATGATCAAAATTAATA
52564953 AAAATAATAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 13 0.76
22 4 0.24
ACGTcount: A:0.49, C:0.02, G:0.12, T:0.37
Consensus pattern (22 bp):
AGATATGATCAAAATTAATATT
Found at i:52569302 original size:17 final size:17
Alignment explanation
Indices: 52569280--52569321 Score: 52
Period size: 16 Copynumber: 2.5 Consensus size: 17
52569270 TTATAAAGGC
52569280 TAAAAATAAATTAT-TTT
1 TAAAAA-AAATTATATTT
*
52569297 TAAAAAATA-TATATTT
1 TAAAAAAAATTATATTT
52569313 TAAAAAAAA
1 TAAAAAAAA
52569322 ATAGAGTTAG
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
15 3 0.14
16 13 0.59
17 6 0.27
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (17 bp):
TAAAAAAAATTATATTT
Found at i:52575915 original size:13 final size:13
Alignment explanation
Indices: 52575897--52575922 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
52575887 CTTTTGTAAC
52575897 TTAGTGAAGATGG
1 TTAGTGAAGATGG
52575910 TTAGTGAAGATGG
1 TTAGTGAAGATGG
52575923 CCTCCGGTTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.00, G:0.38, T:0.31
Consensus pattern (13 bp):
TTAGTGAAGATGG
Found at i:52577407 original size:16 final size:16
Alignment explanation
Indices: 52577375--52577408 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
52577365 CAAGAGCGTT
**
52577375 TGCAAAGAAGATTACA
1 TGCAAAGAAGAAGACA
52577391 TGCAAAGAAGAAGACA
1 TGCAAAGAAGAAGACA
52577407 TG
1 TG
52577409 TTTCAATTAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.50, C:0.12, G:0.24, T:0.15
Consensus pattern (16 bp):
TGCAAAGAAGAAGACA
Found at i:52578967 original size:16 final size:17
Alignment explanation
Indices: 52578946--52578978 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
52578936 TTCAATGGTA
52578946 ATTTTGAATTT-ATTTG
1 ATTTTGAATTTAATTTG
*
52578962 ATTTTGCATTTAATTTG
1 ATTTTGAATTTAATTTG
52578979 TCAAATACGG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 10 0.67
17 5 0.33
ACGTcount: A:0.24, C:0.03, G:0.12, T:0.61
Consensus pattern (17 bp):
ATTTTGAATTTAATTTG
Found at i:52583576 original size:20 final size:20
Alignment explanation
Indices: 52583551--52583601 Score: 59
Period size: 19 Copynumber: 2.6 Consensus size: 20
52583541 AAATATAAAA
*
52583551 TTTGAAATTTTTATAAATAT
1 TTTGAAATTTTTAAAAATAT
*
52583571 TTTG-AATTTTAAAAAATAT
1 TTTGAAATTTTTAAAAATAT
* *
52583590 TCTGATATTTTT
1 TTTGAAATTTTT
52583602 TTATAATTTT
Statistics
Matches: 25, Mismatches: 5, Indels: 2
0.78 0.16 0.06
Matches are distributed among these distances:
19 16 0.64
20 9 0.36
ACGTcount: A:0.37, C:0.02, G:0.06, T:0.55
Consensus pattern (20 bp):
TTTGAAATTTTTAAAAATAT
Found at i:52585670 original size:20 final size:20
Alignment explanation
Indices: 52585645--52585694 Score: 73
Period size: 20 Copynumber: 2.5 Consensus size: 20
52585635 TGATGAAATT
*
52585645 ACTTCATTGTGCTTAGTGGC
1 ACTTCATTGTGCTTAGTGAC
*
52585665 ACTTCATTATGCTTAGTGAC
1 ACTTCATTGTGCTTAGTGAC
*
52585685 ACTTCCTTGT
1 ACTTCATTGT
52585695 TCTTCTGCTT
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.18, C:0.22, G:0.18, T:0.42
Consensus pattern (20 bp):
ACTTCATTGTGCTTAGTGAC
Found at i:52586462 original size:2 final size:2
Alignment explanation
Indices: 52586450--52586479 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
52586440 GGAGAAAACG
52586450 TA TA TA T- TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
52586480 TTCCCTTGTT
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 26 0.96
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (2 bp):
TA
Found at i:52587266 original size:17 final size:17
Alignment explanation
Indices: 52587240--52587274 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
52587230 TCAAGCACAC
52587240 CCTTAATGCTAGAATGG
1 CCTTAATGCTAGAATGG
*
52587257 CCTTAGTGCTAGAATGG
1 CCTTAATGCTAGAATGG
52587274 C
1 C
52587275 ATCTTGGTGA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.26, C:0.20, G:0.26, T:0.29
Consensus pattern (17 bp):
CCTTAATGCTAGAATGG
Found at i:52591692 original size:18 final size:18
Alignment explanation
Indices: 52591664--52591699 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
52591654 AAATTTATAT
*
52591664 TTTTTAAAAAATTATAAA
1 TTTTAAAAAAATTATAAA
*
52591682 TTTTAAAAAAATTCTAAA
1 TTTTAAAAAAATTATAAA
52591700 GAATATATAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.56, C:0.03, G:0.00, T:0.42
Consensus pattern (18 bp):
TTTTAAAAAAATTATAAA
Found at i:52604559 original size:32 final size:32
Alignment explanation
Indices: 52604516--52604593 Score: 95
Period size: 32 Copynumber: 2.4 Consensus size: 32
52604506 GAGTGTGGCC
* * * *
52604516 GTGTGGACCACACGGGCTAGGCCAGAT-TGGGT
1 GTGTGGGCCACACGAGCAAGGCCA-ATCTGGAT
52604548 GTGTGGGCCACACGAGCAAGGCCAATCTGGAT
1 GTGTGGGCCACACGAGCAAGGCCAATCTGGAT
52604580 GTGTGGGCCCACAC
1 GTGTGGG-CCACAC
52604594 ATTCTAAAAT
Statistics
Matches: 40, Mismatches: 4, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
31 2 0.05
32 32 0.80
33 6 0.15
ACGTcount: A:0.21, C:0.26, G:0.37, T:0.17
Consensus pattern (32 bp):
GTGTGGGCCACACGAGCAAGGCCAATCTGGAT
Found at i:52606053 original size:40 final size:40
Alignment explanation
Indices: 52605998--52606161 Score: 247
Period size: 40 Copynumber: 4.1 Consensus size: 40
52605988 TGTTATACTC
52605998 TCTGTCTGGTGTGTTTCGGTTGGATTAGCTCCTATGAGCT
1 TCTGTCTGGTGTGTTTCGGTTGGATTAGCTCCTATGAGCT
* * *
52606038 TCTGTCTAGTGTGTTTCAGTTGGATTAGCTCCTTTGAGCT
1 TCTGTCTGGTGTGTTTCGGTTGGATTAGCTCCTATGAGCT
* * *
52606078 TCTGTCTGGTGTGTTTTGGTTGGATTAGCTCTTATGAGAT
1 TCTGTCTGGTGTGTTTCGGTTGGATTAGCTCCTATGAGCT
* * *
52606118 TCTGTCTGGTGTGTTTCGGTTGGACTAGCTCTTATGAGCA
1 TCTGTCTGGTGTGTTTCGGTTGGATTAGCTCCTATGAGCT
52606158 TCTG
1 TCTG
52606162 GTGTGTTTTA
Statistics
Matches: 111, Mismatches: 13, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
40 111 1.00
ACGTcount: A:0.12, C:0.16, G:0.29, T:0.44
Consensus pattern (40 bp):
TCTGTCTGGTGTGTTTCGGTTGGATTAGCTCCTATGAGCT
Found at i:52606851 original size:12 final size:12
Alignment explanation
Indices: 52606834--52606872 Score: 60
Period size: 12 Copynumber: 3.2 Consensus size: 12
52606824 TACACAAGCG
*
52606834 TGTGGTCGGCCA
1 TGTGGTTGGCCA
*
52606846 TGTGGTTGGCCG
1 TGTGGTTGGCCA
52606858 TGTGGTTGGCCA
1 TGTGGTTGGCCA
52606870 TGT
1 TGT
52606873 CTTGCACACT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
12 24 1.00
ACGTcount: A:0.05, C:0.18, G:0.44, T:0.33
Consensus pattern (12 bp):
TGTGGTTGGCCA
Found at i:52610191 original size:32 final size:32
Alignment explanation
Indices: 52610131--52610191 Score: 79
Period size: 32 Copynumber: 1.9 Consensus size: 32
52610121 TTTTTTAATA
* *
52610131 TTTATATTATATATTAGTATAAATATAAATTT
1 TTTATATTATAAATTAGTATAAACATAAATTT
*
52610163 TTTATGTTATAAATTA-TATAATACATAAA
1 TTTATATTATAAATTAGTATAA-ACATAAA
52610192 AATAACATAA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
31 5 0.20
32 20 0.80
ACGTcount: A:0.46, C:0.02, G:0.03, T:0.49
Consensus pattern (32 bp):
TTTATATTATAAATTAGTATAAACATAAATTT
Found at i:52615484 original size:2 final size:2
Alignment explanation
Indices: 52615477--52615515 Score: 78
Period size: 2 Copynumber: 19.5 Consensus size: 2
52615467 TCATGGCTTT
52615477 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
52615516 CCCAAAATCA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:52626262 original size:32 final size:32
Alignment explanation
Indices: 52626221--52626286 Score: 123
Period size: 32 Copynumber: 2.1 Consensus size: 32
52626211 GAAGGTTTCA
52626221 AGTTTCTGATTTTAAGTCAAGTCAGCTGTTGT
1 AGTTTCTGATTTTAAGTCAAGTCAGCTGTTGT
*
52626253 AGTTTCTGATTTTAAGTCATGTCAGCTGTTGT
1 AGTTTCTGATTTTAAGTCAAGTCAGCTGTTGT
52626285 AG
1 AG
52626287 GACCTGCCAA
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.21, C:0.12, G:0.23, T:0.44
Consensus pattern (32 bp):
AGTTTCTGATTTTAAGTCAAGTCAGCTGTTGT
Found at i:52627983 original size:26 final size:27
Alignment explanation
Indices: 52627937--52627993 Score: 66
Period size: 26 Copynumber: 2.1 Consensus size: 27
52627927 GAATGAAAAG
52627937 AAATTTTATAATTAATATA-TTAATTA
1 AAATTTTATAATTAATATATTTAATTA
*
52627963 AAATTTTAT-A-TAATGAGTATTTAATTG
1 AAATTTTATAATTAAT-A-TATTTAATTA
52627990 AAAT
1 AAAT
52627994 CATAAAAATT
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
24 4 0.15
25 2 0.07
26 11 0.41
27 10 0.37
ACGTcount: A:0.47, C:0.00, G:0.05, T:0.47
Consensus pattern (27 bp):
AAATTTTATAATTAATATATTTAATTA
Done.