Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr09 ID=Chr09-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 70713020
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 1142373 characters in sequence are not A, C, G, or T
File 179 of 226
Found at i:57393936 original size:15 final size:14
Alignment explanation
Indices: 57393911--57393947 Score: 56
Period size: 15 Copynumber: 2.6 Consensus size: 14
57393901 CCCAGGTTCA
57393911 TTCTTTCTCTTATT
1 TTCTTTCTCTTATT
*
57393925 TTCTTCTCTCTTTTT
1 TTCTT-TCTCTTATT
57393940 TTCTTTCT
1 TTCTTTCT
57393948 GTTTATTTCG
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
14 8 0.38
15 13 0.62
ACGTcount: A:0.03, C:0.24, G:0.00, T:0.73
Consensus pattern (14 bp):
TTCTTTCTCTTATT
Found at i:57396900 original size:143 final size:139
Alignment explanation
Indices: 57396631--57396913 Score: 374
Period size: 143 Copynumber: 2.0 Consensus size: 139
57396621 ATTCTCCTTT
*
57396631 GTCCCTGTATTTTTGGGATTTCTGAAATTTAGTCCTTTTATTTTTAATTTCAAGAATTTCATCCC
1 GTCCCTGGATTTTTGGGATTTCTGAAATTTAGTCCTTTTATTTTTAATTTCAAGAATTTCATCCC
* * *
57396696 TCTACATCCCACAGCTCTCAGTTATAATTAGGTTAGATTTCTTTTCTAGTCTCTTTATTTTTTGA
66 TCTACATCCCACAGCTCTCAG-T-TAATTAGGTTAAATTCCTTTCCTAGTCTCTTTA-TTTTTGA
57396761 ATTTTAGAAAATA
128 ATTTTA-AAAATA
* * *
57396774 GTCCCTGGCTTTTTGGGATTTCTGAAATTTGGTCCTTTTATTTTTAATTTCAAGAATTTTATCCC
1 GTCCCTGGATTTTTGGGATTTCTGAAATTTAGTCCTTTTATTTTTAATTTCAAGAATTTCATCCC
* * *
57396839 TCTAGATCTAGATCCACAGCTCTCAG-TACTT-GGTTAAATTCCTTTCCTAGTCT-TTTCTTTTT
66 TCTACATC-----CCACAGCTCTCAGTTAATTAGGTTAAATTCCTTTCCTAGTCTCTTTATTTTT
57396901 GAATTTTAAAAAT
126 GAATTTTAAAAAT
57396914 TTAATCTTTT
Statistics
Matches: 125, Mismatches: 10, Indels: 12
0.85 0.07 0.08
Matches are distributed among these distances:
141 5 0.04
142 13 0.10
143 71 0.57
144 19 0.15
145 4 0.03
148 13 0.10
ACGTcount: A:0.23, C:0.18, G:0.12, T:0.47
Consensus pattern (139 bp):
GTCCCTGGATTTTTGGGATTTCTGAAATTTAGTCCTTTTATTTTTAATTTCAAGAATTTCATCCC
TCTACATCCCACAGCTCTCAGTTAATTAGGTTAAATTCCTTTCCTAGTCTCTTTATTTTTGAATT
TTAAAAATA
Found at i:57404396 original size:16 final size:16
Alignment explanation
Indices: 57404375--57404414 Score: 71
Period size: 16 Copynumber: 2.5 Consensus size: 16
57404365 AAAAAATAAA
*
57404375 AAAAATTATATTATAT
1 AAAAATTACATTATAT
57404391 AAAAATTACATTATAT
1 AAAAATTACATTATAT
57404407 AAAAATTA
1 AAAAATTA
57404415 AATGAGTTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 23 1.00
ACGTcount: A:0.60, C:0.03, G:0.00, T:0.38
Consensus pattern (16 bp):
AAAAATTACATTATAT
Found at i:57404732 original size:56 final size:56
Alignment explanation
Indices: 57404672--57404841 Score: 190
Period size: 52 Copynumber: 3.1 Consensus size: 56
57404662 TTATTTAAAC
57404672 AAAAAAATATTTTTAATAT-AAAAATTGATTCGCGCCTGTCAAATAGGCGCGATT-
1 AAAAAAATATTTTTAATATAAAAAATTGATTCGCGCCTGTCAAATAGGCGCGATTA
** * *
57404726 AAAAAAATATATTTTAATATAAAAAATTGATTCGCGTTTGTCATATACGCGCGATT-
1 AAAAAAATAT-TTTTAATATAAAAAATTGATTCGCGCCTGTCAAATAGGCGCGATTA
* * * * * *
57404782 ---AAAGTTTTTTTAATATAAAAAATTGATTGGTGCCTGTCAGATAGGCACGATTA
1 AAAAAAATATTTTTAATATAAAAAATTGATTCGCGCCTGTCAAATAGGCGCGATTA
*
57404835 CAAAAAA
1 AAAAAAA
57404842 CATACAATTT
Statistics
Matches: 96, Mismatches: 14, Indels: 10
0.80 0.12 0.08
Matches are distributed among these distances:
52 38 0.40
53 5 0.05
54 10 0.10
55 9 0.09
56 34 0.35
ACGTcount: A:0.41, C:0.11, G:0.15, T:0.33
Consensus pattern (56 bp):
AAAAAAATATTTTTAATATAAAAAATTGATTCGCGCCTGTCAAATAGGCGCGATTA
Found at i:57405548 original size:60 final size:59
Alignment explanation
Indices: 57405419--57405549 Score: 133
Period size: 60 Copynumber: 2.2 Consensus size: 59
57405409 CTTACAAATT
* * * *
57405419 TAAATTACTAATAAATTAATTTTAAAATAATTAAAAACAAAAAAATTTATAACATAATCC
1 TAAAATACTAACAAATTAATTTTAAAATAATTAAAAACAAAAAAA-TAATAACATAATAC
* * *
57405479 TAAATTACTAACAAATTAATTTTAAAATAATTATAAAA-AGTAAAAAA-AATTACATTCATAC
1 TAAAATACTAACAAATTAATTTTAAAATAATTA-AAAACA--AAAAAATAATAACA-TAATAC
57405540 -AAAATACTAA
1 TAAAATACTAA
57405550 TCCAAAACTA
Statistics
Matches: 61, Mismatches: 6, Indels: 8
0.81 0.08 0.11
Matches are distributed among these distances:
60 47 0.77
61 8 0.13
62 6 0.10
ACGTcount: A:0.59, C:0.08, G:0.01, T:0.32
Consensus pattern (59 bp):
TAAAATACTAACAAATTAATTTTAAAATAATTAAAAACAAAAAAATAATAACATAATAC
Found at i:57405704 original size:11 final size:11
Alignment explanation
Indices: 57405673--57405732 Score: 51
Period size: 11 Copynumber: 5.7 Consensus size: 11
57405663 AATACATTAC
57405673 CTTCT-TTCTTT
1 CTTCTCTTC-TT
57405684 CTT-TCTTCTT
1 CTTCTCTTCTT
57405694 CTTCT-TCTCTT
1 CTTCTCT-TCTT
57405705 CTTCTCTT-TT
1 CTTCTCTTCTT
57405715 C-TCTCTT-TT
1 CTTCTCTTCTT
57405724 CTTTCTCTT
1 C-TTCTCTT
57405733 TTCCAATTGA
Statistics
Matches: 43, Mismatches: 0, Indels: 12
0.78 0.00 0.22
Matches are distributed among these distances:
9 9 0.21
10 10 0.23
11 23 0.53
12 1 0.02
ACGTcount: A:0.00, C:0.32, G:0.00, T:0.68
Consensus pattern (11 bp):
CTTCTCTTCTT
Found at i:57405704 original size:14 final size:14
Alignment explanation
Indices: 57405682--57405732 Score: 54
Period size: 14 Copynumber: 3.7 Consensus size: 14
57405672 CCTTCTTTCT
57405682 TTCTT-TCTTCTTC
1 TTCTTCTCTTCTTC
57405695 TTCTTCTCTTCTTC
1 TTCTTCTCTTCTTC
*
57405709 -TCTTTTCTCTCTT-
1 TTCTTCTCT-TCTTC
57405722 TTCTTTCTCTT
1 TTC-TTCTCTT
57405733 TTCCAATTGA
Statistics
Matches: 32, Mismatches: 2, Indels: 7
0.78 0.05 0.17
Matches are distributed among these distances:
13 12 0.38
14 15 0.47
15 5 0.16
ACGTcount: A:0.00, C:0.31, G:0.00, T:0.69
Consensus pattern (14 bp):
TTCTTCTCTTCTTC
Found at i:57405733 original size:11 final size:10
Alignment explanation
Indices: 57405681--57405735 Score: 60
Period size: 11 Copynumber: 5.4 Consensus size: 10
57405671 ACCTTCTTTC
57405681 TTTCTT-TCT
1 TTTCTTCTCT
57405690 TCTTCTTCTTCT
1 T-TTCTTC-TCT
*
57405702 CTTCTTCTCT
1 TTTCTTCTCT
57405712 TTTC-TCTCT
1 TTTCTTCTCT
57405721 TTTCTTTCTCT
1 TTTC-TTCTCT
57405732 TTTC
1 TTTC
57405736 CAATTGATAC
Statistics
Matches: 39, Mismatches: 2, Indels: 8
0.80 0.04 0.16
Matches are distributed among these distances:
9 10 0.26
10 11 0.28
11 15 0.38
12 3 0.08
ACGTcount: A:0.00, C:0.31, G:0.00, T:0.69
Consensus pattern (10 bp):
TTTCTTCTCT
Found at i:57405826 original size:20 final size:20
Alignment explanation
Indices: 57405801--57405849 Score: 73
Period size: 20 Copynumber: 2.5 Consensus size: 20
57405791 TTTTCCCATT
*
57405801 GAAGGGACAATAGCC-TGGTG
1 GAAGGGACAACA-CCATGGTG
57405821 GAAGGGACAACACCATGGTG
1 GAAGGGACAACACCATGGTG
57405841 GAAGGGACA
1 GAAGGGACA
57405850 GAGGCAACAG
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
19 2 0.07
20 25 0.93
ACGTcount: A:0.35, C:0.16, G:0.39, T:0.10
Consensus pattern (20 bp):
GAAGGGACAACACCATGGTG
Found at i:57406670 original size:44 final size:43
Alignment explanation
Indices: 57406604--57406768 Score: 208
Period size: 43 Copynumber: 3.8 Consensus size: 43
57406594 CAAACGCCCT
*
57406604 TGTTCTTTAGCGGCGCTTTTCTCAAAAACGCCACTAAACGTCA
1 TGTTCTTTAGCGGCGCTTTTCTCAAAAACGCCGCTAAACGTCA
* * *
57406647 TGTTCTTTAGCGGCGGTTTTTCTCAAAAACGCCGCTAAAAC-CCT
1 TGTTCTTTAGCGGC-GCTTTTCTCAAAAACGCCGCT-AAACGTCA
* * *
57406691 TGTTCTTTAGCGACGCCTTTCTCAAAAACGCCGCTAAAGGTCA
1 TGTTCTTTAGCGGCGCTTTTCTCAAAAACGCCGCTAAACGTCA
**
57406734 TGTTCTTTAGCGGCGCTTCCCT-AAGAAACGCCGCT
1 TGTTCTTTAGCGGCGCTTTTCTCAA-AAACGCCGCT
57406769 CTTGTTTGAT
Statistics
Matches: 104, Mismatches: 14, Indels: 8
0.83 0.11 0.06
Matches are distributed among these distances:
42 5 0.05
43 62 0.60
44 33 0.32
45 4 0.04
ACGTcount: A:0.23, C:0.28, G:0.19, T:0.30
Consensus pattern (43 bp):
TGTTCTTTAGCGGCGCTTTTCTCAAAAACGCCGCTAAACGTCA
Found at i:57407146 original size:21 final size:21
Alignment explanation
Indices: 57407117--57407161 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
57407107 TTTTTCCCTG
* *
57407117 CTCTGCTTCCCTTACTGCCGC
1 CTCTACTTCCCTTACTACCGC
*
57407138 CTCTACTTCCCTTGCTACCGC
1 CTCTACTTCCCTTACTACCGC
57407159 CTC
1 CTC
57407162 CTCTGCTTTA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.07, C:0.49, G:0.11, T:0.33
Consensus pattern (21 bp):
CTCTACTTCCCTTACTACCGC
Found at i:57408883 original size:44 final size:44
Alignment explanation
Indices: 57408819--57409116 Score: 537
Period size: 44 Copynumber: 6.8 Consensus size: 44
57408809 AAACAGCACA
57408819 TATAATATTAATTAAGTTGTGTATTATGTATTATGTACGTTATG
1 TATAATATTAATTAAGTTGTGTATTATGTATTATGTACGTTATG
* *
57408863 GATAATATTAATTAAGTTGTGTATTATGTATTATGTATGTTATG
1 TATAATATTAATTAAGTTGTGTATTATGTATTATGTACGTTATG
*
57408907 TATAATATTAATTAAGTTGTGTAATATGTATTATGTACGTTATG
1 TATAATATTAATTAAGTTGTGTATTATGTATTATGTACGTTATG
57408951 TATAATATTAATTAAGTTGTGTATTATGTATTATGTACGTTATG
1 TATAATATTAATTAAGTTGTGTATTATGTATTATGTACGTTATG
*
57408995 GATAATATTAATTAAGTTGTGTATTATGTATTATGTACGTTAT-
1 TATAATATTAATTAAGTTGTGTATTATGTATTATGTACGTTATG
*
57409038 T-TAATATTAATTAAGTTATGTATTATGTATTATGTACGTTATG
1 TATAATATTAATTAAGTTGTGTATTATGTATTATGTACGTTATG
57409081 TATAATATTAATTAAGTTGTGTATTATGTATTATGT
1 TATAATATTAATTAAGTTGTGTATTATGTATTATGT
57409117 NNNNNNNNNN
Statistics
Matches: 242, Mismatches: 10, Indels: 4
0.95 0.04 0.02
Matches are distributed among these distances:
42 40 0.17
43 1 0.00
44 201 0.83
ACGTcount: A:0.33, C:0.02, G:0.16, T:0.50
Consensus pattern (44 bp):
TATAATATTAATTAAGTTGTGTATTATGTATTATGTACGTTATG
Found at i:57409287 original size:44 final size:44
Alignment explanation
Indices: 57409220--57409721 Score: 864
Period size: 44 Copynumber: 11.3 Consensus size: 44
57409210 NNNNNNNTTA
57409220 TGTATTATGTATTATGTACGTTATGTATAATATTAATTAAGTTG
1 TGTATTATGTATTATGTACGTTATGTATAATATTAATTAAGTTG
*
57409264 TGTATTATGTATTATGTATGTTATGTATAATATTAATTAAGTTG
1 TGTATTATGTATTATGTACGTTATGTATAATATTAATTAAGTTG
*
57409308 TGTAATATGTATTATGTACGTTATGTATAATATTAATTAAGTTG
1 TGTATTATGTATTATGTACGTTATGTATAATATTAATTAAGTTG
*
57409352 TGTAATATGTATTATGTACGTTATGTATAATATTAATTAAGTTGTGCATTG
1 TGTATTATGTATTATGTACGTTATGTATAATATTAATTAA-----G--TTG
*
57409403 TGTATTATGTATTATGTACGTTATGTACAATATTAATTAAGTTG
1 TGTATTATGTATTATGTACGTTATGTATAATATTAATTAAGTTG
57409447 TGTATTATGTATTATGTACGTTAT-T-TAATATTAATTAAGTTG
1 TGTATTATGTATTATGTACGTTATGTATAATATTAATTAAGTTG
57409489 TGTATTATGTATTATGTACGTTATGTATAATATTAATTAAGTTG
1 TGTATTATGTATTATGTACGTTATGTATAATATTAATTAAGTTG
*
57409533 TGTATTATGTATTATGTATGTTATGTATAATATTAATTAAGTTG
1 TGTATTATGTATTATGTACGTTATGTATAATATTAATTAAGTTG
*
57409577 TGTAATATGTATTATGTACGTTATGTATAATATTAATTAAGTTG
1 TGTATTATGTATTATGTACGTTATGTATAATATTAATTAAGTTG
*
57409621 TGTATTATGTTTTATGTACGTTATGTATAATATTAATTAAGTTG
1 TGTATTATGTATTATGTACGTTATGTATAATATTAATTAAGTTG
57409665 TGTATTATGTATTATGTACGTTATGTATAATATTAATTAAGTTG
1 TGTATTATGTATTATGTACGTTATGTATAATATTAATTAAGTTG
57409709 TGTATTATGTATT
1 TGTATTATGTATT
57409722 TAAGTTGTGT
Statistics
Matches: 437, Mismatches: 12, Indels: 18
0.94 0.03 0.04
Matches are distributed among these distances:
42 40 0.09
43 2 0.00
44 352 0.81
46 1 0.00
49 1 0.00
51 41 0.09
ACGTcount: A:0.32, C:0.02, G:0.16, T:0.50
Consensus pattern (44 bp):
TGTATTATGTATTATGTACGTTATGTATAATATTAATTAAGTTG
Found at i:57409519 original size:269 final size:262
Alignment explanation
Indices: 57409220--57409721 Score: 914
Period size: 269 Copynumber: 1.9 Consensus size: 262
57409210 NNNNNNNTTA
57409220 TGTATTATGTATTATGTACGTTATGTATAATATTAATTAAGTTGTGTATTATGTATTATGTATGT
1 TGTATTATGTATTATGTACGTTATGTATAATATTAATTAAGTTGTGTATTATGTATTATGTATGT
57409285 TATGTATAATATTAATTAAGTTGTGTAATATGTATTATGTACGTTATGTATAATATTAATTAAGT
66 TATGTATAATATTAATTAAGTTGTGTAATATGTATTATGTACGTTATGTATAATATTAATTAAGT
57409350 TGTGTAATATGTATTATGTACGTTATGTATAATATTAATTAAGTTGTGCATTGTGTATTATGTAT
131 TGTGTAATATGTATTATGTACGTTATGTATAATATTAATTAA-----G--TTGTGTATTATGTAT
57409415 TATGTACGTTATGTACAATATTAATTAAGTTGTGTATTATGTATTATGTACGTTATTTAATATTA
189 TATGTACGTTATGTACAATATTAATTAAGTTGTGTATTATGTATTATGTACGTTATTTAATATTA
57409480 ATTAAGTTG
254 ATTAAGTTG
57409489 TGTATTATGTATTATGTACGTTATGTATAATATTAATTAAGTTGTGTATTATGTATTATGTATGT
1 TGTATTATGTATTATGTACGTTATGTATAATATTAATTAAGTTGTGTATTATGTATTATGTATGT
57409554 TATGTATAATATTAATTAAGTTGTGTAATATGTATTATGTACGTTATGTATAATATTAATTAAGT
66 TATGTATAATATTAATTAAGTTGTGTAATATGTATTATGTACGTTATGTATAATATTAATTAAGT
* *
57409619 TGTGTATTATGTTTTATGTACGTTATGTATAATATTAATTAAGTTGTGTATTATGTATTATGTAC
131 TGTGTAATATGTATTATGTACGTTATGTATAATATTAATTAAGTTGTGTATTATGTATTATGTAC
*
57409684 GTTATGTATAATATTAATTAAGTTGTGTATTATGTATT
196 GTTATGTACAATATTAATTAAGTTGTGTATTATGTATT
57409722 TAAGTTGTGT
Statistics
Matches: 230, Mismatches: 3, Indels: 7
0.96 0.01 0.03
Matches are distributed among these distances:
262 59 0.26
264 1 0.00
269 170 0.74
ACGTcount: A:0.32, C:0.02, G:0.16, T:0.50
Consensus pattern (262 bp):
TGTATTATGTATTATGTACGTTATGTATAATATTAATTAAGTTGTGTATTATGTATTATGTATGT
TATGTATAATATTAATTAAGTTGTGTAATATGTATTATGTACGTTATGTATAATATTAATTAAGT
TGTGTAATATGTATTATGTACGTTATGTATAATATTAATTAAGTTGTGTATTATGTATTATGTAC
GTTATGTACAATATTAATTAAGTTGTGTATTATGTATTATGTACGTTATTTAATATTAATTAAGT
TG
Found at i:57409743 original size:16 final size:17
Alignment explanation
Indices: 57409701--57409748 Score: 53
Period size: 20 Copynumber: 2.7 Consensus size: 17
57409691 ATAATATTAA
57409701 TTAAGTTGTGTATTATG
1 TTAAGTTGTGTATTATG
57409718 TATTTAAGTTGTGTATTATG
1 ---TTAAGTTGTGTATTATG
*
57409738 -TAAGTTATGTA
1 TTAAGTTGTGTA
57409749 AGAAATGTAT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
16 10 0.37
20 17 0.63
ACGTcount: A:0.27, C:0.00, G:0.21, T:0.52
Consensus pattern (17 bp):
TTAAGTTGTGTATTATG
Found at i:57409747 original size:9 final size:9
Alignment explanation
Indices: 57409733--57409905 Score: 67
Period size: 9 Copynumber: 19.1 Consensus size: 9
57409723 AAGTTGTGTA
57409733 TTATGTAAG
1 TTATGTAAG
57409742 TTATGTAAG
1 TTATGTAAG
**
57409751 AAATGT-A-
1 TTATGTAAG
57409758 TTATGTAAG
1 TTATGTAAG
*
57409767 TTGTGT-A-
1 TTATGTAAG
* *
57409774 TAATGTTAG
1 TTATGTAAG
**
57409783 TTATCAAAG
1 TTATGTAAG
57409792 TTATGT-A-
1 TTATGTAAG
*
57409799 CTATGTACTTAG
1 TTATGTA---AG
*
57409811 TTATTTAAG
1 TTATGTAAG
57409820 TTATGTAAG
1 TTATGTAAG
*
57409829 TTGTGT-A-
1 TTATGTAAG
57409836 TTATGTAAG
1 TTATGTAAG
*
57409845 TTAT-TATG
1 TTATGTAAG
57409853 TTATTATGTAAG
1 ---TTATGTAAG
*
57409865 TTATGCAAG
1 TTATGTAAG
*
57409874 TTTATATAAG
1 -TTATGTAAG
*
57409884 TTTATATATAAG
1 --T-TATGTAAG
57409896 TTATGTAAG
1 TTATGTAAG
57409905 T
1 T
57409906 ATATCACTTT
Statistics
Matches: 121, Mismatches: 25, Indels: 36
0.66 0.14 0.20
Matches are distributed among these distances:
7 18 0.15
8 10 0.08
9 62 0.51
10 8 0.07
11 7 0.06
12 16 0.13
ACGTcount: A:0.33, C:0.02, G:0.18, T:0.47
Consensus pattern (9 bp):
TTATGTAAG
Found at i:57409750 original size:25 final size:25
Alignment explanation
Indices: 57409702--57409875 Score: 104
Period size: 25 Copynumber: 7.2 Consensus size: 25
57409692 TAATATTAAT
57409702 TAAGTTGTGTATTATGT-A--T-T-
1 TAAGTTGTGTATTATGTAAGTTATG
57409722 TAAGTTGTGTATTATGTAAGTTATG
1 TAAGTTGTGTATTATGTAAGTTATG
*** *
57409747 TAAGAAATGTATTATGTAAGTTGTG
1 TAAGTTGTGTATTATGTAAGTTATG
* **
57409772 TATA-ATGT-TAGTTATCAAAGTTATG
1 TA-AGTTGTGTA-TTATGTAAGTTATG
* * *
57409797 T-ACTATGTACTTAGTTATTTAAGTTATG
1 TAAGT-TGT--GTA-TTATGTAAGTTATG
57409825 TAAGTTGTGTATTATGTAAGTTAT-
1 TAAGTTGTGTATTATGTAAGTTATG
57409849 T-A--TGT-TATTATGTAAGTTATG
1 TAAGTTGTGTATTATGTAAGTTATG
*
57409870 CAAGTT
1 TAAGTT
57409876 TATATAAGTT
Statistics
Matches: 121, Mismatches: 16, Indels: 30
0.72 0.10 0.18
Matches are distributed among these distances:
20 32 0.26
21 4 0.03
22 1 0.01
23 3 0.02
24 5 0.04
25 52 0.43
26 3 0.02
28 19 0.16
29 2 0.02
ACGTcount: A:0.30, C:0.02, G:0.20, T:0.48
Consensus pattern (25 bp):
TAAGTTGTGTATTATGTAAGTTATG
Found at i:57409798 original size:41 final size:41
Alignment explanation
Indices: 57409722--57409805 Score: 105
Period size: 41 Copynumber: 2.0 Consensus size: 41
57409712 ATTATGTATT
* ** *
57409722 TAAGTTGTGTATTATGTAAGTTATGTAAGAAATGTATTATG
1 TAAGTTGTGTATAATGTAAGTTATCAAAGAAATGTACTATG
* **
57409763 TAAGTTGTGTATAATGTTAGTTATCAAAGTTATGTACTATG
1 TAAGTTGTGTATAATGTAAGTTATCAAAGAAATGTACTATG
57409804 TA
1 TA
57409806 CTTAGTTATT
Statistics
Matches: 36, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
41 36 1.00
ACGTcount: A:0.33, C:0.02, G:0.20, T:0.44
Consensus pattern (41 bp):
TAAGTTGTGTATAATGTAAGTTATCAAAGAAATGTACTATG
Found at i:57409830 original size:37 final size:36
Alignment explanation
Indices: 57409789--57409869 Score: 94
Period size: 37 Copynumber: 2.2 Consensus size: 36
57409779 TTAGTTATCA
57409789 AAGTTATGTACTATGT-ACTTAGTTAT-TTAAGTTATGT
1 AAGTTATGTACTATGTAACTTA-TTATGTT-A-TTATGT
* * *
57409826 AAGTTGTGTATTATGTAAGTTATTATGTTATTATGT
1 AAGTTATGTACTATGTAACTTATTATGTTATTATGT
57409862 AAGTTATG
1 AAGTTATG
57409870 CAAGTTTATA
Statistics
Matches: 38, Mismatches: 4, Indels: 5
0.81 0.09 0.11
Matches are distributed among these distances:
36 13 0.34
37 19 0.50
38 6 0.16
ACGTcount: A:0.30, C:0.02, G:0.19, T:0.49
Consensus pattern (36 bp):
AAGTTATGTACTATGTAACTTATTATGTTATTATGT
Found at i:57411081 original size:146 final size:147
Alignment explanation
Indices: 57410858--57411175 Score: 406
Period size: 146 Copynumber: 2.2 Consensus size: 147
57410848 GTTTATATAT
* * * * *
57410858 AAGCGCCACTAACTATAAGTCAAAACGCAGTCGTTTCATCAACAAATAGCTCAAACCTGTGGCAT
1 AAGCGCCACTAACTATAAGTCAAAACGCAATCGCTTCATCAACAAATACCTCAAACCCGTGACAT
* * * *
57410923 TTTTGAATAAACGCCACTAAT-A-ATATAGCAAAACAGCATCGTATCAATAAATGTTAAAACATT
66 TTTCGAAAAAACGCCACTAATAACATATA-AAAAACAGCATCGTATCAATAAATGTTAAAACAAT
57410986 TTTACGGCATTTTAAGCA
130 TTTACGGCATTTTAAGCA
* ** *
57411004 AAGCACCACTAACTATAAGTCAAAACGCAATCGCTTCATCAACACTTACCTCAAACCCGTGACGT
1 AAGCGCCACTAACTATAAGTCAAAACGCAATCGCTTCATCAACAAATACCTCAAACCCGTGACAT
* * * * *
57411069 TTTCGAAAAAACGCCACTAATAACATTTAAAAAACGGCATCGTTTCTATAAATGTTAGAACAATT
66 TTTCGAAAAAACGCCACTAATAACATATAAAAAACAGCATCGTATCAATAAATGTTAAAACAATT
* * *
57411134 TTGCGGCGTTTTAAGTA
131 TTACGGCATTTTAAGCA
*
57411151 AAGCGCCATTAACTATAAGTTCAAA
1 AAGCGCCACTAACTATAAG-TCAAA
57411176 CGAGGTCGTT
Statistics
Matches: 146, Mismatches: 23, Indels: 4
0.84 0.13 0.02
Matches are distributed among these distances:
146 75 0.51
147 62 0.42
148 9 0.06
ACGTcount: A:0.39, C:0.22, G:0.13, T:0.26
Consensus pattern (147 bp):
AAGCGCCACTAACTATAAGTCAAAACGCAATCGCTTCATCAACAAATACCTCAAACCCGTGACAT
TTTCGAAAAAACGCCACTAATAACATATAAAAAACAGCATCGTATCAATAAATGTTAAAACAATT
TTACGGCATTTTAAGCA
Found at i:57411250 original size:147 final size:147
Alignment explanation
Indices: 57410840--57411309 Score: 443
Period size: 147 Copynumber: 3.2 Consensus size: 147
57410830 AAATTAACCA
57410840 TTTGCGGCG-TTTATA-TATAAGCGCCACTAACTATAAGTCAAAACGCAGTCGTTTCATCAACAA
1 TTTGCGGCGTTTTA-AGTA-AAGCGCCACTAACTATAAGTCAAAACGCAGTCGTTTCATCAACAA
* * * * *
57410903 ATAGCTCAAACCTGTGGC-ATTTTTGAATAAACGCCACTAATAATATAG-CAAAACAGCATCGTA
64 TTAACTCAAACCTGTGGCGATTTTAGAA-AAACGCCACTAATAACATAGACAAAACGGCATCGTA
*
57410966 TCAATAAATGTTAAAACATT
128 TCAATAAATGTTAAAACAAT
* * * * * * *
57410986 TTTACGGCATTTTAAGCAAAGCACCACTAACTATAAGTCAAAACGCAATCGCTTCATCAACACTT
1 TTTGCGGCGTTTTAAGTAAAGCGCCACTAACTATAAGTCAAAACGCAGTCGTTTCATCAACAATT
* * * * ** * *
57411051 ACCTCAAACCCGTGACG-TTTTCGAAAAAACGCCACTAATAACATTTAAAAAACGGCATCGTTTC
66 AACTCAAACCTGTGGCGATTTTAG-AAAAACGCCACTAATAACATAGACAAAACGGCATCGTATC
* *
57411115 TATAAATGTTAGAACAAT
130 AATAAATGTTAAAACAAT
* ** *
57411133 TTTGCGGCGTTTTAAGTAAAGCGCCATTAACTATAAGTTC-AAACG-AGGTCGTTTCCCCAACAG
1 TTTGCGGCGTTTTAAGTAAAGCGCCACTAACTATAAG-TCAAAACGCA-GTCGTTTCATCAACAA
* * * * * * * *
57411196 TTAACTCAAGCTTGTGGCGATTCTAGAAAAACACCACTAATACCATAGACAAAACGACAACATAT
64 TTAACTCAAACCTGTGGCGATTTTAGAAAAACGCCACTAATAACATAGACAAAACGGCATCGTAT
** *
57411261 CAATAAA-CATAATTACAAT
129 CAATAAATGTTAA-AACAAT
* * * *
57411280 TTTGCAGCGTTTCATGGAAAGCGCCACTAA
1 TTTGCGGCGTTTTAAGTAAAGCGCCACTAA
57411310 TAGCAACGTA
Statistics
Matches: 258, Mismatches: 57, Indels: 17
0.78 0.17 0.05
Matches are distributed among these distances:
146 88 0.34
147 164 0.64
148 6 0.02
ACGTcount: A:0.38, C:0.22, G:0.14, T:0.26
Consensus pattern (147 bp):
TTTGCGGCGTTTTAAGTAAAGCGCCACTAACTATAAGTCAAAACGCAGTCGTTTCATCAACAATT
AACTCAAACCTGTGGCGATTTTAGAAAAACGCCACTAATAACATAGACAAAACGGCATCGTATCA
ATAAATGTTAAAACAAT
Found at i:57412555 original size:72 final size:72
Alignment explanation
Indices: 57412471--57413063 Score: 769
Period size: 72 Copynumber: 8.2 Consensus size: 72
57412461 TTTTCCAGAA
* * *
57412471 AAGCGCCGCTAATACCACTGCATCTCAAATCAAAACGATGCGTTTTGATTATTTTTTACGGCG-T
1 AAGCGCCGCTAATGCCACTACATCTCAAATCAAAACGATGCGTTTTGATTATTTTTTGCGGCGCT
57412535 TTTCACAG
66 TTT-ACAG
* ** * * * *
57412543 AAGTGCCGCTAATGCCACTACATCTCAAATCAAATTGATGCGTTTTGGTTTTTTTCTTGTGGTGC
1 AAGCGCCGCTAATGCCACTACATCTCAAATCAAAACGATGCGTTTTGATTATTTT-TTGCGGCGC
57412608 TTTTACAG
65 TTTTACAG
* * * *
57412616 AAGTGCCGCTAATGCCACTACATCTCAAATCAAAACGATGCGTTTTGGTTTTTTTTTGTGGCGCT
1 AAGCGCCGCTAATGCCACTACATCTCAAATCAAAACGATGCGTTTTGATTATTTTTTGCGGCGCT
57412681 TTTACAG
66 TTTACAG
* * * *
57412688 AAGCGCCGCTAACGCCACTACATCTCCAATCAAAACGATGCGTTTTGGTT-TTTTTTGTGGCGCT
1 AAGCGCCGCTAATGCCACTACATCTCAAATCAAAACGATGCGTTTTGATTATTTTTTGCGGCGCT
57412752 TTTACAG
66 TTTACAG
* *
57412759 AAGCGCCACTAATGCCACTACATCTCAAATCAAAACGATGTGTTTTGATTATTTTTTGCGGCGCT
1 AAGCGCCGCTAATGCCACTACATCTCAAATCAAAACGATGCGTTTTGATTATTTTTTGCGGCGCT
**
57412824 TTTATGG
66 TTTACAG
* *
57412831 AAGCGCCGCTAATGCCACTGCATCTCAAATCAAAACGATGTGTTTTGATTATTTTTTGCGGCGCT
1 AAGCGCCGCTAATGCCACTACATCTCAAATCAAAACGATGCGTTTTGATTATTTTTTGCGGCGCT
**
57412896 TTTATGG
66 TTTACAG
* * * * * * * *
57412903 AAGCGCCGCTAGTGCCACAACATCTCAAATCAAAATGAAGCGTTTGGGTTATTTTTTTGCAGCGT
1 AAGCGCCGCTAATGCCACTACATCTCAAATCAAAACGATGCGTTTTGATTA-TTTTTTGCGGCGC
*
57412968 TTTTACGG
65 TTTTACAG
* * *
57412976 AATCGCCGCTAATGCCACTACATCTCAAATCAAAACGATGCGTTTGGATTATTTGTTTGCTGCG-
1 AAGCGCCGCTAATGCCACTACATCTCAAATCAAAACGATGCGTTTTGATTATTT-TTTGCGGCGC
57413040 TTTCTACAG
65 TTT-TACAG
*
57413049 AATCGCCGCTAATGC
1 AAGCGCCGCTAATGC
57413064 TCAATTTTTA
Statistics
Matches: 470, Mismatches: 45, Indels: 11
0.89 0.09 0.02
Matches are distributed among these distances:
71 66 0.14
72 248 0.53
73 152 0.32
74 4 0.01
ACGTcount: A:0.25, C:0.22, G:0.19, T:0.34
Consensus pattern (72 bp):
AAGCGCCGCTAATGCCACTACATCTCAAATCAAAACGATGCGTTTTGATTATTTTTTGCGGCGCT
TTTACAG
Found at i:57412738 original size:145 final size:144
Alignment explanation
Indices: 57412471--57413063 Score: 764
Period size: 145 Copynumber: 4.1 Consensus size: 144
57412461 TTTTCCAGAA
* * *
57412471 AAGCGCCGCTAATACCACTGCATCTCAAATCAAAACGATGCGTTTTGATTATTTTTTACGGCG-T
1 AAGCGCCGCTAATGCCACTACATCTCAAATCAAAACGATGCGTTTTGATTATTTTTTGCGGCGCT
* **
57412535 TTTCACAGAAGTGCCGCTAATGCCACTACATCTCAAATCAAATTGATGCGTTTTGGTTTTTTTCT
66 TTT-ACAGAAGCGCCGCTAATGCCACTACATCTCAAATCAAAACGATGCGTTTTGGTTTTTTT-T
*
57412600 TGTGGTGCTTTTACAG
129 TGTGGCGCTTTTACAG
* * * *
57412616 AAGTGCCGCTAATGCCACTACATCTCAAATCAAAACGATGCGTTTTGGTTTTTTTTTGTGGCGCT
1 AAGCGCCGCTAATGCCACTACATCTCAAATCAAAACGATGCGTTTTGATTATTTTTTGCGGCGCT
* *
57412681 TTTACAGAAGCGCCGCTAACGCCACTACATCTCCAATCAAAACGATGCGTTTTGG-TTTTTTTTG
66 TTTACAGAAGCGCCGCTAATGCCACTACATCTCAAATCAAAACGATGCGTTTTGGTTTTTTTTTG
57412745 TGGCGCTTTTACAG
131 TGGCGCTTTTACAG
* *
57412759 AAGCGCCACTAATGCCACTACATCTCAAATCAAAACGATGTGTTTTGATTATTTTTTGCGGCGCT
1 AAGCGCCGCTAATGCCACTACATCTCAAATCAAAACGATGCGTTTTGATTATTTTTTGCGGCGCT
** * * * *
57412824 TTTATGGAAGCGCCGCTAATGCCACTGCATCTCAAATCAAAACGATGTGTTTTGATTATTTTTTG
66 TTTACAGAAGCGCCGCTAATGCCACTACATCTCAAATCAAAACGATGCGTTTTGGTTTTTTTTTG
* **
57412889 CGGCGCTTTTATGG
131 TGGCGCTTTTACAG
* * * * * * * *
57412903 AAGCGCCGCTAGTGCCACAACATCTCAAATCAAAATGAAGCGTTTGGGTTATTTTTTTGCAGCGT
1 AAGCGCCGCTAATGCCACTACATCTCAAATCAAAACGATGCGTTTTGATTA-TTTTTTGCGGCGC
* * *
57412968 TTTTACGGAATCGCCGCTAATGCCACTACATCTCAAATCAAAACGATGCG-TTTGGATTATTTGT
65 TTTTACAGAAGCGCCGCTAATGCCACTACATCTCAAATCAAAACGATGCGTTTTGG-TT-TTTTT
57413032 TTGCT-GCG-TTTCTACAG
128 TTG-TGGCGCTTT-TACAG
*
57413049 AATCGCCGCTAATGC
1 AAGCGCCGCTAATGC
57413064 TCAATTTTTA
Statistics
Matches: 389, Mismatches: 52, Indels: 13
0.86 0.11 0.03
Matches are distributed among these distances:
143 123 0.32
144 72 0.19
145 165 0.42
146 29 0.07
ACGTcount: A:0.25, C:0.22, G:0.19, T:0.34
Consensus pattern (144 bp):
AAGCGCCGCTAATGCCACTACATCTCAAATCAAAACGATGCGTTTTGATTATTTTTTGCGGCGCT
TTTACAGAAGCGCCGCTAATGCCACTACATCTCAAATCAAAACGATGCGTTTTGGTTTTTTTTTG
TGGCGCTTTTACAG
Found at i:57413911 original size:19 final size:19
Alignment explanation
Indices: 57413879--57413953 Score: 105
Period size: 20 Copynumber: 3.7 Consensus size: 19
57413869 AAAAAATGAA
*
57413879 ATTTTAGAATTTTTTATAAAT
1 ATTTT-GAATTTTTTA-AATT
57413900 ATTTTGAATTTTTTAAAATT
1 ATTTTGAATTTTTT-AAATT
57413920 ATTTTGAATTTTTTAAATTT
1 ATTTTGAATTTTTTAAA-TT
57413940 ATTTTGAATTTTTT
1 ATTTTGAATTTTTT
57413954 TGTTGAAAGA
Statistics
Matches: 51, Mismatches: 1, Indels: 5
0.89 0.02 0.09
Matches are distributed among these distances:
19 3 0.06
20 42 0.82
21 6 0.12
ACGTcount: A:0.32, C:0.00, G:0.05, T:0.63
Consensus pattern (19 bp):
ATTTTGAATTTTTTAAATT
Found at i:57414036 original size:9 final size:9
Alignment explanation
Indices: 57414030--57414057 Score: 56
Period size: 9 Copynumber: 3.1 Consensus size: 9
57414020 TTGTTATTTG
57414030 AGTTATTCT
1 AGTTATTCT
57414039 AGTTATTCT
1 AGTTATTCT
57414048 AGTTATTCT
1 AGTTATTCT
57414057 A
1 A
57414058 ATTGTAAAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.25, C:0.11, G:0.11, T:0.54
Consensus pattern (9 bp):
AGTTATTCT
Found at i:57419332 original size:16 final size:16
Alignment explanation
Indices: 57419311--57419344 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
57419301 AAAATAATGC
57419311 TTTAAAAATTGTCAAA
1 TTTAAAAATTGTCAAA
57419327 TTTAAAAATTGTCAAA
1 TTTAAAAATTGTCAAA
57419343 TT
1 TT
57419345 GTATTTTCTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.47, C:0.06, G:0.06, T:0.41
Consensus pattern (16 bp):
TTTAAAAATTGTCAAA
Found at i:57419520 original size:7 final size:7
Alignment explanation
Indices: 57419508--57419532 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
57419498 TTTAGTCTCC
57419508 TTTTAAA
1 TTTTAAA
57419515 TTTTAAA
1 TTTTAAA
57419522 TTTTAAA
1 TTTTAAA
57419529 TTTT
1 TTTT
57419533 TATTTTATGT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (7 bp):
TTTTAAA
Found at i:57420493 original size:25 final size:25
Alignment explanation
Indices: 57420437--57420493 Score: 96
Period size: 25 Copynumber: 2.3 Consensus size: 25
57420427 GAAGTTTCTT
* *
57420437 TTATTTAATGTTTTCTATCTGATTA
1 TTATTTTATGTTTTATATCTGATTA
57420462 TTATTTTATGTTTTATATCTGATTA
1 TTATTTTATGTTTTATATCTGATTA
57420487 TTATTTT
1 TTATTTT
57420494 TCATTCTTCT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
25 30 1.00
ACGTcount: A:0.23, C:0.05, G:0.07, T:0.65
Consensus pattern (25 bp):
TTATTTTATGTTTTATATCTGATTA
Found at i:57428878 original size:20 final size:18
Alignment explanation
Indices: 57428853--57428895 Score: 59
Period size: 20 Copynumber: 2.3 Consensus size: 18
57428843 ATCTTAAAAG
57428853 ATAAAAAAAAATTAATAACT
1 ATAAAAAAAAATT-A-AACT
*
57428873 ATAAAATAAAATTAAACT
1 ATAAAAAAAAATTAAACT
57428891 ATAAA
1 ATAAA
57428896 CTTTAAAACA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 9 0.41
19 1 0.05
20 12 0.55
ACGTcount: A:0.70, C:0.05, G:0.00, T:0.26
Consensus pattern (18 bp):
ATAAAAAAAAATTAAACT
Found at i:57433696 original size:50 final size:50
Alignment explanation
Indices: 57433586--57433810 Score: 247
Period size: 50 Copynumber: 4.5 Consensus size: 50
57433576 ACATGGCAAA
** * ** *
57433586 GCCATGTCCCAGACATGGTCTTACATGGGATGTTTTTTGTAC--TGCCAAT
1 GCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCT-CGGTGCCAAT
* * * ** * *
57433635 GCCATATCCCAGATATAGTCTTACATGGGAGTTCTCATATCGGTGCCCAT
1 GCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGCCAAT
* ***
57433685 GCCATGTCCCAGACATAGTCTTATGGGGGACCTCTCATCTCGGTGCCAAT
1 GCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGCCAAT
* *
57433735 GCCATGTCCCAAACATGGTCTTACATGAGACCTCTCATCTCGGTGCCAAT
1 GCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGCCAAT
*
57433785 GCCATGTCCCAGGCATGGTCTTACAT
1 GCCATGTCCCAGACATGGTCTTACAT
57433811 CCCAAACATG
Statistics
Matches: 147, Mismatches: 27, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
48 1 0.01
49 31 0.21
50 115 0.78
ACGTcount: A:0.22, C:0.28, G:0.21, T:0.29
Consensus pattern (50 bp):
GCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGCCAAT
Found at i:57433852 original size:69 final size:69
Alignment explanation
Indices: 57433741--57433879 Score: 251
Period size: 69 Copynumber: 2.0 Consensus size: 69
57433731 CAATGCCATG
* *
57433741 TCCCAAACATGGTCTTACATGAGACCTCTCATCTCGGTGCCAATGCCATGTCCCAGGCATGGTCT
1 TCCCAAACATGGTCTTACATGAGACCTCTCATCTCGGTGCCAATGCCATATCCCAGACATGGTCT
57433806 TACA
66 TACA
*
57433810 TCCCAAACATGGTCTTACATGGGACCTCTCATCTCGGTGCCAATGCCATATCCCAGACATGGTCT
1 TCCCAAACATGGTCTTACATGAGACCTCTCATCTCGGTGCCAATGCCATATCCCAGACATGGTCT
57433875 TACA
66 TACA
57433879 T
1 T
57433880 GGGACCTCTC
Statistics
Matches: 67, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
69 67 1.00
ACGTcount: A:0.24, C:0.32, G:0.18, T:0.27
Consensus pattern (69 bp):
TCCCAAACATGGTCTTACATGAGACCTCTCATCTCGGTGCCAATGCCATATCCCAGACATGGTCT
TACA
Found at i:57433884 original size:50 final size:50
Alignment explanation
Indices: 57433809--57433938 Score: 233
Period size: 50 Copynumber: 2.6 Consensus size: 50
57433799 ATGGTCTTAC
*
57433809 ATCCCAAACATGGTCTTACATGGGACCTCTCATCTCGGTGCCAATGCCAT
1 ATCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGCCAATGCCAT
*
57433859 ATCCCAGACATGGTCTTACATGGGACCTCTCATCTTGGTGCCAATGCCAT
1 ATCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGCCAATGCCAT
*
57433909 GTCCCAGACATGGTCTTACATGGGACCTCT
1 ATCCCAGACATGGTCTTACATGGGACCTCT
57433939 TTACCCAAAT
Statistics
Matches: 77, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
50 77 1.00
ACGTcount: A:0.22, C:0.31, G:0.20, T:0.27
Consensus pattern (50 bp):
ATCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGCCAATGCCAT
Found at i:57433902 original size:119 final size:119
Alignment explanation
Indices: 57433711--57433929 Score: 393
Period size: 119 Copynumber: 1.8 Consensus size: 119
57433701 AGTCTTATGG
*
57433711 GGGACCTCTCATCTCGGTGCCAATGCCATGTCCCAAACATGGTCTTACATGAGACCTCTCATCTC
1 GGGACCTCTCATCTCGGTGCCAATGCCATATCCCAAACATGGTCTTACATGAGACCTCTCATCTC
*
57433776 GGTGCCAATGCCATGTCCCAGGCATGGTCTTACATCCCAAACATGGTCTTACAT
66 GGTGCCAATGCCATGTCCCAGACATGGTCTTACATCCCAAACATGGTCTTACAT
* * *
57433830 GGGACCTCTCATCTCGGTGCCAATGCCATATCCCAGACATGGTCTTACATGGGACCTCTCATCTT
1 GGGACCTCTCATCTCGGTGCCAATGCCATATCCCAAACATGGTCTTACATGAGACCTCTCATCTC
57433895 GGTGCCAATGCCATGTCCCAGACATGGTCTTACAT
66 GGTGCCAATGCCATGTCCCAGACATGGTCTTACAT
57433930 GGGACCTCTT
Statistics
Matches: 95, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
119 95 1.00
ACGTcount: A:0.22, C:0.32, G:0.20, T:0.26
Consensus pattern (119 bp):
GGGACCTCTCATCTCGGTGCCAATGCCATATCCCAAACATGGTCTTACATGAGACCTCTCATCTC
GGTGCCAATGCCATGTCCCAGACATGGTCTTACATCCCAAACATGGTCTTACAT
Found at i:57435765 original size:19 final size:19
Alignment explanation
Indices: 57435743--57435779 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
57435733 ATCACTGTCA
*
57435743 CCCACTGTAATCAAATTTG
1 CCCACCGTAATCAAATTTG
57435762 CCCACCGTAATCAAATTT
1 CCCACCGTAATCAAATTT
57435780 ATTATTAGCT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.32, C:0.30, G:0.08, T:0.30
Consensus pattern (19 bp):
CCCACCGTAATCAAATTTG
Found at i:57436364 original size:30 final size:32
Alignment explanation
Indices: 57436322--57436382 Score: 99
Period size: 30 Copynumber: 2.0 Consensus size: 32
57436312 GGGGGTGGGA
57436322 TGGGAGGGGAGTAAAAGTTTCT-GGGGAAAGG
1 TGGGAGGGGAGTAAAAGTTTCTAGGGGAAAGG
*
57436353 TGGGA-GGGAGTAAAAGTTTTTAGGGGAAAG
1 TGGGAGGGGAGTAAAAGTTTCTAGGGGAAAG
57436383 TAAGGAGGTT
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
30 15 0.54
31 13 0.46
ACGTcount: A:0.31, C:0.02, G:0.46, T:0.21
Consensus pattern (32 bp):
TGGGAGGGGAGTAAAAGTTTCTAGGGGAAAGG
Found at i:57436390 original size:31 final size:30
Alignment explanation
Indices: 57436328--57436390 Score: 83
Period size: 30 Copynumber: 2.1 Consensus size: 30
57436318 GGGATGGGAG
*
57436328 GGGAGTAAAAGTTTCTGGGGAAAGGTGGGA
1 GGGAGTAAAAGTTTCTGGGGAAAGGTAGGA
*
57436358 GGGAGTAAAAGTTTTTAGGGGAAA-GTAAGGA
1 GGGAGTAAAAGTTTCT-GGGGAAAGGT-AGGA
57436389 GG
1 GG
57436391 TTTGGGAGGT
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
30 17 0.59
31 12 0.41
ACGTcount: A:0.33, C:0.02, G:0.44, T:0.21
Consensus pattern (30 bp):
GGGAGTAAAAGTTTCTGGGGAAAGGTAGGA
Found at i:57439089 original size:29 final size:29
Alignment explanation
Indices: 57439052--57439132 Score: 144
Period size: 29 Copynumber: 2.8 Consensus size: 29
57439042 TTTTTAACCG
*
57439052 TTAATCGAACCGAAATTTTTTCAAAAAAA
1 TTAACCGAACCGAAATTTTTTCAAAAAAA
57439081 TTAACCGAACCGAAATTTTTTCAAAAAAA
1 TTAACCGAACCGAAATTTTTTCAAAAAAA
*
57439110 TGAACCGAACCGAAATTTTTTCA
1 TTAACCGAACCGAAATTTTTTCA
57439133 GTTAATTCGG
Statistics
Matches: 50, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 50 1.00
ACGTcount: A:0.44, C:0.17, G:0.09, T:0.30
Consensus pattern (29 bp):
TTAACCGAACCGAAATTTTTTCAAAAAAA
Found at i:57439211 original size:9 final size:9
Alignment explanation
Indices: 57439193--57439232 Score: 62
Period size: 9 Copynumber: 4.4 Consensus size: 9
57439183 TTTGGTTAAA
57439193 AATTAACCG
1 AATTAACCG
*
57439202 AATTACCCG
1 AATTAACCG
*
57439211 AATTACCCG
1 AATTAACCG
57439220 AATTAACCG
1 AATTAACCG
57439229 AATT
1 AATT
57439233 GAATCACTAC
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
9 29 1.00
ACGTcount: A:0.40, C:0.25, G:0.10, T:0.25
Consensus pattern (9 bp):
AATTAACCG
Found at i:57447846 original size:30 final size:31
Alignment explanation
Indices: 57447791--57447858 Score: 84
Period size: 30 Copynumber: 2.2 Consensus size: 31
57447781 ACCCTTAAAA
** * **
57447791 TATTTACACTATTGGTCCTTCAAATTTTTCG
1 TATTTACACTATTAATCCCTCAAATTTTGAG
57447822 TATTTACACT-TTAATCCCTCAAATTTTGAG
1 TATTTACACTATTAATCCCTCAAATTTTGAG
57447852 TATTTAC
1 TATTTAC
57447859 TATTGGGCAA
Statistics
Matches: 32, Mismatches: 5, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
30 22 0.69
31 10 0.31
ACGTcount: A:0.26, C:0.19, G:0.07, T:0.47
Consensus pattern (31 bp):
TATTTACACTATTAATCCCTCAAATTTTGAG
Found at i:57450069 original size:35 final size:35
Alignment explanation
Indices: 57450030--57450139 Score: 141
Period size: 35 Copynumber: 3.1 Consensus size: 35
57450020 TGTTTCGGAG
*
57450030 GGACTAGCTCTTATGAGCATTGACGTGCTTCGGTT
1 GGACTAGCTCTTATGAGCATTGGCGTGCTTCGGTT
* * *
57450065 GGACTAGCTCTTATGAGCATTGGTGTGGTTCTGTT
1 GGACTAGCTCTTATGAGCATTGGCGTGCTTCGGTT
** *
57450100 GGACTTTCTCTTCTGAGCATTGGCGT-CTTTCGGTT
1 GGACTAGCTCTTATGAGCATTGGCGTGC-TTCGGTT
57450135 GGACT
1 GGACT
57450140 TGTTGTTGTG
Statistics
Matches: 64, Mismatches: 10, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
35 64 1.00
ACGTcount: A:0.14, C:0.19, G:0.29, T:0.38
Consensus pattern (35 bp):
GGACTAGCTCTTATGAGCATTGGCGTGCTTCGGTT
Found at i:57450152 original size:35 final size:34
Alignment explanation
Indices: 57450038--57450154 Score: 110
Period size: 35 Copynumber: 3.4 Consensus size: 34
57450028 AGGGACTAGC
* * *
57450038 TCTTATGAGCATTGACGTGCTTCGGTTGGACTAGC
1 TCTTATGAGCATTGGCGT-CTTCGGTTGGACTTGT
* * *
57450073 TCTTATGAGCATTGGTGTGGTTCTGTTGGACTT-T
1 TCTTATGAGCATTGGCGT-CTTCGGTTGGACTTGT
*
57450107 CTCTTCTGAGCATTGGCGTCTTTCGGTTGGACTTGT
1 -TCTTATGAGCATTGGCGTC-TTCGGTTGGACTTGT
* *
57450143 TGTTGTGAGCAT
1 TCTTATGAGCAT
57450155 CTGGTGTGAT
Statistics
Matches: 67, Mismatches: 12, Indels: 6
0.79 0.14 0.07
Matches are distributed among these distances:
35 66 0.99
36 1 0.01
ACGTcount: A:0.13, C:0.17, G:0.29, T:0.41
Consensus pattern (34 bp):
TCTTATGAGCATTGGCGTCTTCGGTTGGACTTGT
Found at i:57457867 original size:26 final size:26
Alignment explanation
Indices: 57457837--57457887 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
57457827 TCCGATAGTA
57457837 AAACTTAAAAATGTTTGAATTGCTTG
1 AAACTTAAAAATGTTTGAATTGCTTG
*
57457863 AAACTTAAAAATGTTTGGATTGCTT
1 AAACTTAAAAATGTTTGAATTGCTT
57457888 AACTGTTGTA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.37, C:0.08, G:0.16, T:0.39
Consensus pattern (26 bp):
AAACTTAAAAATGTTTGAATTGCTTG
Found at i:57458197 original size:21 final size:21
Alignment explanation
Indices: 57458149--57458197 Score: 71
Period size: 21 Copynumber: 2.3 Consensus size: 21
57458139 TGGATATGTT
* *
57458149 GCGACACGGAACCCCTGTGTC
1 GCGACATGAAACCCCTGTGTC
*
57458170 GCGACATGAAACCCTTGTGTC
1 GCGACATGAAACCCCTGTGTC
57458191 GCGACAT
1 GCGACAT
57458198 CGCTGTAACT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.22, C:0.33, G:0.27, T:0.18
Consensus pattern (21 bp):
GCGACATGAAACCCCTGTGTC
Found at i:57469306 original size:27 final size:28
Alignment explanation
Indices: 57469247--57469300 Score: 83
Period size: 28 Copynumber: 2.0 Consensus size: 28
57469237 AAAATAATTA
*
57469247 AAATTAAATATTTTAATAATTTAAGTGC
1 AAATTAAATATTTTAATAATTCAAGTGC
*
57469275 AAATTAATTATTTT-ATAATTCAAGTG
1 AAATTAAATATTTTAATAATTCAAGTG
57469301 TGAATTTTGA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
27 11 0.46
28 13 0.54
ACGTcount: A:0.44, C:0.04, G:0.07, T:0.44
Consensus pattern (28 bp):
AAATTAAATATTTTAATAATTCAAGTGC
Found at i:57475167 original size:51 final size:50
Alignment explanation
Indices: 57475091--57475258 Score: 167
Period size: 51 Copynumber: 3.3 Consensus size: 50
57475081 TATAAACACG
* * *
57475091 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCGATTGATAATGGTCACA
1 TGTGTAGTACTATGTGAAGGCTACTACGTGTATCGA-TGATAATGATCACA
* * * ** * *
57475142 TGTGTAGTACTATGTGTAGGCTACTACGTGAACCGAAAAGT-TTGATCACG
1 TGTGTAGTACTATGTGAAGGCTACTACGTGTATCGATGA-TAATGATCACA
* *
57475192 TGTGTAGTACTATGTGAAGGCTACTACGTGTATCGAATGATAATAATTACA
1 TGTGTAGTACTATGTGAAGGCTACTACGTGTATCG-ATGATAATGATCACA
* * *
57475243 CGGGTGGTACTATGTG
1 TGTGTAGTACTATGTG
57475259 CAAACCACCG
Statistics
Matches: 93, Mismatches: 21, Indels: 6
0.77 0.17 0.05
Matches are distributed among these distances:
50 40 0.43
51 53 0.57
ACGTcount: A:0.28, C:0.14, G:0.26, T:0.32
Consensus pattern (50 bp):
TGTGTAGTACTATGTGAAGGCTACTACGTGTATCGATGATAATGATCACA
Found at i:57475204 original size:50 final size:51
Alignment explanation
Indices: 57475087--57475235 Score: 158
Period size: 50 Copynumber: 2.9 Consensus size: 51
57475077 TGCTTATAAA
* * * * ** *
57475087 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCGATTGATAATGGT
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAACCGAAAGATAATGAT
* * *
57475138 CACATGTGTAGTACTATGTGTAGGCTACTACGTGAACCGAAA-AGT-TTGAT
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAACCGAAAGA-TAATGAT
* * *
57475188 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGTATCGAATGATAAT
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAACCGAAAGATAAT
57475236 AATTACACGG
Statistics
Matches: 80, Mismatches: 15, Indels: 6
0.79 0.15 0.06
Matches are distributed among these distances:
50 42 0.52
51 38 0.47
ACGTcount: A:0.28, C:0.15, G:0.26, T:0.31
Consensus pattern (51 bp):
CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAACCGAAAGATAATGAT
Found at i:57483641 original size:23 final size:23
Alignment explanation
Indices: 57483615--57483668 Score: 58
Period size: 23 Copynumber: 2.4 Consensus size: 23
57483605 TACTAAATAA
* *
57483615 ATTAATAACAAT-AAAATAATAT
1 ATTAATAAAAATCAAAATAAAAT
*
57483637 CATTAA-AAAAATCAAATTAAAAT
1 -ATTAATAAAAATCAAAATAAAAT
57483660 ATTAATAAA
1 ATTAATAAA
57483669 CTAATATTTA
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
22 10 0.38
23 16 0.62
ACGTcount: A:0.65, C:0.06, G:0.00, T:0.30
Consensus pattern (23 bp):
ATTAATAAAAATCAAAATAAAAT
Found at i:57501209 original size:50 final size:49
Alignment explanation
Indices: 57501144--57501332 Score: 182
Period size: 51 Copynumber: 3.8 Consensus size: 49
57501134 AAAGTGAAAG
* *
57501144 TGATGGTCACGTGTGTAGTACTATGTGCAGGTTACTACGTGTACCAGAA
1 TGATGGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCAGAA
* * * * *
57501193 TGATAGGTCGCATGTGTAGTACTATGTGCAGGTTACTATGCGTACC-GGA
1 TGAT-GGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCAGAA
* * * * * * *
57501242 TAGCTTCGATCACGTGTGTAGTACTATGTGCAGGCTAATACATGTATCGGATAA
1 T-G-AT-GGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTA-C-CAGAA
*
57501296 TGATGGTCACATCTGTAGTACTATGTGCAGGCTACTA
1 TGATGGTCACATGTGTAGTACTATGTGCAGGCTACTA
57501333 TGTGAACCGG
Statistics
Matches: 111, Mismatches: 23, Indels: 10
0.77 0.16 0.07
Matches are distributed among these distances:
49 7 0.06
50 38 0.34
51 61 0.55
52 2 0.02
53 1 0.01
54 2 0.02
ACGTcount: A:0.25, C:0.17, G:0.27, T:0.31
Consensus pattern (49 bp):
TGATGGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCAGAA
Found at i:57501265 original size:101 final size:102
Alignment explanation
Indices: 57501150--57501334 Score: 275
Period size: 101 Copynumber: 1.8 Consensus size: 102
57501140 AAAGTGATGG
* * * * *
57501150 TCACGTGTGTAGTACTATGTGCAGGTTACTACGTGTA-C-CAGAATGATAGGTCGCATGTGTAGT
1 TCACGTGTGTAGTACTATGTGCAGGCTAATACATGTATCGCAGAATGAT-GGTCACATCTGTAGT
*
57501213 ACTATGTGCAGGTTACTATGCGTACCGGATAGCTTCGA
65 ACTATGTGCAGGCTACTATGCGTACCGGATAGCTTCGA
* *
57501251 TCACGTGTGTAGTACTATGTGCAGGCTAATACATGTATCGGATAATGATGGTCACATCTGTAGTA
1 TCACGTGTGTAGTACTATGTGCAGGCTAATACATGTATCGCAGAATGATGGTCACATCTGTAGTA
57501316 CTATGTGCAGGCTACTATG
66 CTATGTGCAGGCTACTATG
57501335 TGAACCGGTG
Statistics
Matches: 74, Mismatches: 8, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
101 34 0.46
102 33 0.45
103 7 0.09
ACGTcount: A:0.25, C:0.17, G:0.26, T:0.31
Consensus pattern (102 bp):
TCACGTGTGTAGTACTATGTGCAGGCTAATACATGTATCGCAGAATGATGGTCACATCTGTAGTA
CTATGTGCAGGCTACTATGCGTACCGGATAGCTTCGA
Found at i:57501342 original size:102 final size:101
Alignment explanation
Indices: 57501150--57501342 Score: 271
Period size: 102 Copynumber: 1.9 Consensus size: 101
57501140 AAAGTGATGG
* * * * *
57501150 TCACGTGTGTAGTACTATGTGCAGGTTACTACGTGTACCAGAATGATAGGTCGCATGTGTAGTAC
1 TCACGTGTGTAGTACTATGTGCAGGCTAATACATGTACCAGAATGATAGGTCACATCTGTAGTAC
* *
57501215 TATGTGCAGGTTACTATGCGTACCGGATAGCTTCGA
66 TATGTGCAGGCTACTATGCGAACCGGATAGCTTCGA
* *
57501251 TCACGTGTGTAGTACTATGTGCAGGCTAATACATGTATCGGATAATGAT-GGTCACATCTGTAGT
1 TCACGTGTGTAGTACTATGTGCAGGCTAATACATGTA-C-CAGAATGATAGGTCACATCTGTAGT
*
57501315 ACTATGTGCAGGCTACTATGTGAACCGG
64 ACTATGTGCAGGCTACTATGCGAACCGG
57501343 TGTCATTAAT
Statistics
Matches: 80, Mismatches: 10, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
101 34 0.43
102 39 0.49
103 7 0.09
ACGTcount: A:0.25, C:0.18, G:0.27, T:0.31
Consensus pattern (101 bp):
TCACGTGTGTAGTACTATGTGCAGGCTAATACATGTACCAGAATGATAGGTCACATCTGTAGTAC
TATGTGCAGGCTACTATGCGAACCGGATAGCTTCGA
Found at i:57501579 original size:16 final size:16
Alignment explanation
Indices: 57501560--57501591 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
57501550 TGATTGAAAG
*
57501560 TGAAAAAGTGAAATTA
1 TGAAAAAGTAAAATTA
57501576 TGAAAAAGTAAAATTA
1 TGAAAAAGTAAAATTA
57501592 GCAACAAAAC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.59, C:0.00, G:0.16, T:0.25
Consensus pattern (16 bp):
TGAAAAAGTAAAATTA
Found at i:57504358 original size:47 final size:47
Alignment explanation
Indices: 57504307--57504406 Score: 112
Period size: 47 Copynumber: 2.1 Consensus size: 47
57504297 TGGTTGGACC
** *
57504307 ATGGCAAC-ATGTGATATGTGATTTTCGTATAAGACCATATCTGGGAT
1 ATGGCAACGATGTGATATGTGATACT-GTATAAGACCATAGCTGGGAT
* * * * *
57504354 ATGGCATCGGTGTGATATGTGCTACTGTGTAAGACCATAGCTGGGCT
1 ATGGCAACGATGTGATATGTGATACTGTATAAGACCATAGCTGGGAT
57504401 ATGGCA
1 ATGGCA
57504407 TCAATATGTA
Statistics
Matches: 44, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
47 31 0.70
48 13 0.30
ACGTcount: A:0.26, C:0.15, G:0.28, T:0.31
Consensus pattern (47 bp):
ATGGCAACGATGTGATATGTGATACTGTATAAGACCATAGCTGGGAT
Found at i:57507294 original size:101 final size:102
Alignment explanation
Indices: 57507174--57507358 Score: 284
Period size: 101 Copynumber: 1.8 Consensus size: 102
57507164 AAAGTGATGG
* * *
57507174 TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCAGA-A-TGATAGGTCGCATGTGTAGT
1 TCACGTGTGTAGTACTATGTGCAGGCTAATACATGTACCAGATAGTGAT-GGTCACATGTGTAGT
57507237 ACTATGTGCAGGCTACTATGCGTACCGGATAGCTTCGA
65 ACTATGTGCAGGCTACTATGCGTACCGGATAGCTTCGA
* * *
57507275 TCACGTGTGTAGTACTATGTGCAGGCTAATACATGTATCGGATAGTGATGGTCACATTTGTAGTA
1 TCACGTGTGTAGTACTATGTGCAGGCTAATACATGTACCAGATAGTGATGGTCACATGTGTAGTA
*
57507340 TTATGTGCAGGCTACTATG
66 CTATGTGCAGGCTACTATG
57507359 TGAACCGGTG
Statistics
Matches: 75, Mismatches: 7, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
101 38 0.51
102 33 0.44
103 4 0.05
ACGTcount: A:0.24, C:0.17, G:0.27, T:0.31
Consensus pattern (102 bp):
TCACGTGTGTAGTACTATGTGCAGGCTAATACATGTACCAGATAGTGATGGTCACATGTGTAGTA
CTATGTGCAGGCTACTATGCGTACCGGATAGCTTCGA
Found at i:57507317 original size:51 final size:49
Alignment explanation
Indices: 57507171--57507366 Score: 196
Period size: 51 Copynumber: 3.9 Consensus size: 49
57507161 GTGAAAGTGA
* *
57507171 TGGTCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCAGA-ATGAT
1 TGGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGATA-G-T
* * * *
57507221 AGGTCGCATGTGTAGTACTATGTGCAGGCTACTATGCGTACCGGATAGCT
1 TGGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGATAG-T
* * * * *
57507271 TCGATCACGTGTGTAGTACTATGTGCAGGCTAATACATGTATCGGATAGT
1 T-GGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGATAGT
* * * *
57507321 GATGGTCACATTTGTAGTATTATGTGCAGGCTACTATGTGAACCGG
1 --TGGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCGG
57507367 TGTCATTAAT
Statistics
Matches: 117, Mismatches: 25, Indels: 7
0.79 0.17 0.05
Matches are distributed among these distances:
50 42 0.36
51 74 0.63
52 1 0.01
ACGTcount: A:0.24, C:0.17, G:0.28, T:0.31
Consensus pattern (49 bp):
TGGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGATAGT
Found at i:57507366 original size:102 final size:101
Alignment explanation
Indices: 57507174--57507366 Score: 280
Period size: 102 Copynumber: 1.9 Consensus size: 101
57507164 AAAGTGATGG
* * *
57507174 TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCAGAATGATAGGTCGCATGTGTAGTAC
1 TCACGTGTGTAGTACTATGTGCAGGCTAATACATGTACCAGAATGATAGGTCACATGTGTAGTAC
*
57507239 TATGTGCAGGCTACTATGCGTACCGGATAGCTTCGA
66 TATGTGCAGGCTACTATGCGAACCGGATAGCTTCGA
* * *
57507275 TCACGTGTGTAGTACTATGTGCAGGCTAATACATGTATCGGATAGTGAT-GGTCACATTTGTAGT
1 TCACGTGTGTAGTACTATGTGCAGGCTAATACATGTACCAGA-A-TGATAGGTCACATGTGTAGT
* *
57507339 ATTATGTGCAGGCTACTATGTGAACCGG
64 ACTATGTGCAGGCTACTATGCGAACCGG
57507367 TGTCATTAAT
Statistics
Matches: 81, Mismatches: 9, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
101 38 0.47
102 39 0.48
103 4 0.05
ACGTcount: A:0.24, C:0.18, G:0.27, T:0.31
Consensus pattern (101 bp):
TCACGTGTGTAGTACTATGTGCAGGCTAATACATGTACCAGAATGATAGGTCACATGTGTAGTAC
TATGTGCAGGCTACTATGCGAACCGGATAGCTTCGA
Found at i:57507530 original size:16 final size:16
Alignment explanation
Indices: 57507511--57507542 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
57507501 TGATTGAAAG
*
57507511 TGAAAAAGTGAAATTA
1 TGAAAAAGTAAAATTA
57507527 TGAAAAAGTAAAATTA
1 TGAAAAAGTAAAATTA
57507543 GCAACAAAAC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.59, C:0.00, G:0.16, T:0.25
Consensus pattern (16 bp):
TGAAAAAGTAAAATTA
Found at i:57513557 original size:42 final size:42
Alignment explanation
Indices: 57513449--57513558 Score: 114
Period size: 42 Copynumber: 2.6 Consensus size: 42
57513439 ATGGCCTAAC
* * * * *
57513449 ACATAGCCTGACACATGGGCATGTAAGGTAATTTTGAGAGTA
1 ACATGGCCAGACACATGGGCGTGTGAGGCAATTTTGAGAGTA
* * *
57513491 ACATGGCCGGACACATGGGTGTGTGAGGCAATTTTGAGAGTT
1 ACATGGCCAGACACATGGGCGTGTGAGGCAATTTTGAGAGTA
* *
57513533 ATATGGCCTAG-CACATGGCCGTGTGA
1 ACATGGCC-AGACACATGGGCGTGTGA
57513559 CCCTACTCAG
Statistics
Matches: 56, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
42 55 0.98
43 1 0.02
ACGTcount: A:0.27, C:0.16, G:0.31, T:0.25
Consensus pattern (42 bp):
ACATGGCCAGACACATGGGCGTGTGAGGCAATTTTGAGAGTA
Found at i:57519800 original size:156 final size:157
Alignment explanation
Indices: 57519511--57519823 Score: 556
Period size: 156 Copynumber: 2.0 Consensus size: 157
57519501 AATCAAAAAG
* * **
57519511 AAAATGTAGTACGAGTAGAAAAAGTCTTGAGATAGCAAAAAAAATTCATGAGTGAGATTTATTGA
1 AAAATGTAGTACGAGTAGAAAAAGTCTTGAGACAACAAAAAAAATTCATGAGTGAGATGCATTGA
*
57519576 AAAATAGAAAAGTGATAAAGTCACAGGCATAAGAAAAACTTGTTCATTAGTTCACAGAAACTCAT
66 AAAATAGAAAAGTGATAAAGTCACAGGCATAAGAAAAACTTGTTCATTAGTTCACAAAAACTCAT
57519641 AGGCTAGCCGTAGTTACTTTGTTATGC
131 AGGCTAGCCGTAGTTACTTTGTTATGC
* *
57519668 AAAA-GTAGTATGAGTAGAAAAAGTCTTGAGACAACAAAAAAAATTCATGAGTGAGATGCATTGG
1 AAAATGTAGTACGAGTAGAAAAAGTCTTGAGACAACAAAAAAAATTCATGAGTGAGATGCATTGA
57519732 AAAATAGAAAAGTGATAAAGTCACAGGCATAAGAAAAACTTGTTCATTAGTTCACAAAAACTCAT
66 AAAATAGAAAAGTGATAAAGTCACAGGCATAAGAAAAACTTGTTCATTAGTTCACAAAAACTCAT
57519797 AGGCTAGCCGTAGTTACTTTGTTATGC
131 AGGCTAGCCGTAGTTACTTTGTTATGC
57519824 TATGATTTCT
Statistics
Matches: 149, Mismatches: 7, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
156 145 0.97
157 4 0.03
ACGTcount: A:0.42, C:0.12, G:0.20, T:0.26
Consensus pattern (157 bp):
AAAATGTAGTACGAGTAGAAAAAGTCTTGAGACAACAAAAAAAATTCATGAGTGAGATGCATTGA
AAAATAGAAAAGTGATAAAGTCACAGGCATAAGAAAAACTTGTTCATTAGTTCACAAAAACTCAT
AGGCTAGCCGTAGTTACTTTGTTATGC
Found at i:57521513 original size:490 final size:490
Alignment explanation
Indices: 57520593--57521566 Score: 1813
Period size: 490 Copynumber: 2.0 Consensus size: 490
57520583 AACCGATAAT
57520593 GGTTTCTATGTCACAACACTGAATGCTTGATGTTGCAACATAGGGAGCAGAGTGGAGAAATCATG
1 GGTTTCTATGTCACAACACTGAATGCTTGATGTTGCAACATAGGGAGCAGAGTGGAGAAATCATG
*
57520658 AAACTGCCTTCAATATCGTGACACAGCCTAAGGGTGTCGTGACATACCCATGAAGATATCCCAAG
66 AAACTGCCTTCAATATCGCGACACAGCCTAAGGGTGTCGTGACATACCCATGAAGATATCCCAAG
*
57520723 GGGAGTACACTGACTACTATGTCGCGACATAGGACCTGCTGTGTCATGACATCGAATCTAGACGA
131 GGGAGTACACTGACTACTATGTCGCGACATAGGACCTGCTGTGTCACGACATCGAATCTAGACGA
* *
57520788 GAAGTAAACACGAGTCAAGGGGTGTTTTGGTTTGTACAATCAAACTTAAAGCTCGGGAACGCCAG
196 GAAGTAAACACAAGTCAAGGGGTGTTTTGGTTTGTACAATCAAACTTAAAGCTCAGGAACGCCAG
57520853 CTAACCTAGGGTTAAGGATGATGAACACCTGAGATCTATAAATAGGCTCCTTTGTCACATGTAAA
261 CTAACCTAGGGTTAAGGATGATGAACACCTGAGATCTATAAATAGGCTCCTTTGTCACATGTAAA
*
57520918 TGGACACAATTCACTTAGCCAAGAATTGCACTTTTAATTTCAATTTAGTTTTTTCTTTTCTTAGG
326 TGGACACAATTCACTTAGCCAAGAATTACACTTTTAATTTCAATTTAGTTTTTTCTTTTCTTAGG
* *
57520983 TTAGATTTATTTTCATTAATTCTTGTTCTATTTTGAGAGATCTGTATTGTGGAGACAATCAAACC
391 TTAGAATTATTTTCATTAATTCTTGTTCTATTTTGAGAGATCTGTATTGTGGAGACAACCAAACC
57521048 TTGTGGATTCACGTTCAACCTTAATAAAACCTTGC
456 TTGTGGATTCACGTTCAACCTTAATAAAACCTTGC
*
57521083 GGTTTCTATGTCACAACACTGAATGGTTGATGTTGCAACATAGGGAGCAGAGTGGAGAAATCATG
1 GGTTTCTATGTCACAACACTGAATGCTTGATGTTGCAACATAGGGAGCAGAGTGGAGAAATCATG
*
57521148 AAACTGCCTTCAATATCGCGACACAGCCTAAGGGTGTTGTGACATACCCATGAAGATATCCCAAG
66 AAACTGCCTTCAATATCGCGACACAGCCTAAGGGTGTCGTGACATACCCATGAAGATATCCCAAG
* * * * * *
57521213 GGGAGTACACTGACTGCTATGTCGCGACATAGGACCTGGTGTGTCACGACTTCGACTTTGGACGA
131 GGGAGTACACTGACTACTATGTCGCGACATAGGACCTGCTGTGTCACGACATCGAATCTAGACGA
57521278 GAAGTAAACACAAGTCAAGGGGTGTTTTGGTTTGTACAATCAAACTTAAAGCTCAGGAACGCCAG
196 GAAGTAAACACAAGTCAAGGGGTGTTTTGGTTTGTACAATCAAACTTAAAGCTCAGGAACGCCAG
57521343 CTAACCTAGGGTTAAGGATGATGAACACCTGAGATCTATAAATAGGCTCCTTTGTCACATGTAAA
261 CTAACCTAGGGTTAAGGATGATGAACACCTGAGATCTATAAATAGGCTCCTTTGTCACATGTAAA
57521408 TGGACACAATTCACTTAGCCAAGAATTACACTTTTAATTTCAATTTAGTTTTTTCTTTTCTTAGG
326 TGGACACAATTCACTTAGCCAAGAATTACACTTTTAATTTCAATTTAGTTTTTTCTTTTCTTAGG
57521473 TTAGAATTATTTTCATTAATTCTTGTTCTATTTTGAGAGATCTGTATTGTGGAGACAACCAAACC
391 TTAGAATTATTTTCATTAATTCTTGTTCTATTTTGAGAGATCTGTATTGTGGAGACAACCAAACC
57521538 TTGTGGATTCACGTTCAACCTTAATAAAA
456 TTGTGGATTCACGTTCAACCTTAATAAAA
57521567 TTAGGCTCAT
Statistics
Matches: 469, Mismatches: 15, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
490 469 1.00
ACGTcount: A:0.30, C:0.19, G:0.21, T:0.30
Consensus pattern (490 bp):
GGTTTCTATGTCACAACACTGAATGCTTGATGTTGCAACATAGGGAGCAGAGTGGAGAAATCATG
AAACTGCCTTCAATATCGCGACACAGCCTAAGGGTGTCGTGACATACCCATGAAGATATCCCAAG
GGGAGTACACTGACTACTATGTCGCGACATAGGACCTGCTGTGTCACGACATCGAATCTAGACGA
GAAGTAAACACAAGTCAAGGGGTGTTTTGGTTTGTACAATCAAACTTAAAGCTCAGGAACGCCAG
CTAACCTAGGGTTAAGGATGATGAACACCTGAGATCTATAAATAGGCTCCTTTGTCACATGTAAA
TGGACACAATTCACTTAGCCAAGAATTACACTTTTAATTTCAATTTAGTTTTTTCTTTTCTTAGG
TTAGAATTATTTTCATTAATTCTTGTTCTATTTTGAGAGATCTGTATTGTGGAGACAACCAAACC
TTGTGGATTCACGTTCAACCTTAATAAAACCTTGC
Found at i:57529466 original size:20 final size:21
Alignment explanation
Indices: 57529433--57529478 Score: 85
Period size: 20 Copynumber: 2.2 Consensus size: 21
57529423 TCATCTTCCA
57529433 TACTGTCTTTTTTTTCCTTAT
1 TACTGTCTTTTTTTTCCTTAT
57529454 TACTGTC-TTTTTTTCCTTAT
1 TACTGTCTTTTTTTTCCTTAT
57529474 TACTG
1 TACTG
57529479 CTTCCCTTTC
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
20 18 0.72
21 7 0.28
ACGTcount: A:0.11, C:0.20, G:0.07, T:0.63
Consensus pattern (21 bp):
TACTGTCTTTTTTTTCCTTAT
Found at i:57529488 original size:20 final size:20
Alignment explanation
Indices: 57529445--57529488 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
57529435 CTGTCTTTTT
**
57529445 TTTCCTTATTACTGTCTTTT
1 TTTCCTTATTACTGTCTTCC
57529465 TTTCCTTATTACTG-CTTCCC
1 TTTCCTTATTACTGTCTT-CC
57529485 TTTC
1 TTTC
57529489 TTTTCTTTTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
19 3 0.14
20 18 0.86
ACGTcount: A:0.09, C:0.27, G:0.05, T:0.59
Consensus pattern (20 bp):
TTTCCTTATTACTGTCTTCC
Found at i:57530498 original size:29 final size:29
Alignment explanation
Indices: 57530455--57530517 Score: 108
Period size: 29 Copynumber: 2.2 Consensus size: 29
57530445 TGCACTGTGA
* *
57530455 TACTTAGTCTGACATTGAACTATGCTTTC
1 TACTTAGTCTAACATTAAACTATGCTTTC
57530484 TACTTAGTCTAACATTAAACTATGCTTTC
1 TACTTAGTCTAACATTAAACTATGCTTTC
57530513 TACTT
1 TACTT
57530518 GTGGAACAAT
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
29 32 1.00
ACGTcount: A:0.27, C:0.21, G:0.10, T:0.43
Consensus pattern (29 bp):
TACTTAGTCTAACATTAAACTATGCTTTC
Found at i:57546597 original size:23 final size:23
Alignment explanation
Indices: 57546571--57546624 Score: 72
Period size: 23 Copynumber: 2.3 Consensus size: 23
57546561 GTTCAAAATT
*
57546571 TTAAAATAAACAATATATATGAG
1 TTAAAATAAACAATATATATGAA
* *
57546594 TTAAAACAAATAATATATATGAA
1 TTAAAATAAACAATATATATGAA
57546617 TGTAAAAT
1 T-TAAAAT
57546625 TTAATACAAA
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
23 21 0.81
24 5 0.19
ACGTcount: A:0.57, C:0.04, G:0.07, T:0.31
Consensus pattern (23 bp):
TTAAAATAAACAATATATATGAA
Found at i:57546920 original size:23 final size:23
Alignment explanation
Indices: 57546868--57546960 Score: 98
Period size: 23 Copynumber: 4.0 Consensus size: 23
57546858 NNNNNNATAC
**
57546868 ATGATAAATTTAAAATAATGTTA
1 ATGATAAATTTAAAATAATAATA
**
57546891 ACAATAAATTTAAAATAATAATA
1 ATGATAAATTTAAAATAATAATA
* *
57546914 TTGATAAA-TTACAAATAATAAAA
1 ATGATAAATTTA-AAATAATAATA
*
57546937 CATGATAAATCTAAAATAATAATA
1 -ATGATAAATTTAAAATAATAATA
57546961 TACAATACAC
Statistics
Matches: 56, Mismatches: 11, Indels: 5
0.78 0.15 0.07
Matches are distributed among these distances:
22 3 0.05
23 34 0.61
24 17 0.30
25 2 0.04
ACGTcount: A:0.59, C:0.04, G:0.04, T:0.32
Consensus pattern (23 bp):
ATGATAAATTTAAAATAATAATA
Found at i:57547827 original size:23 final size:22
Alignment explanation
Indices: 57547800--57547844 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
57547790 AATTTAAATC
57547800 TCTAAGATTACAAAATCTTATCT
1 TCTAAGATTAC-AAATCTTATCT
* *
57547823 TCTAAGATTGCATATCTTATCT
1 TCTAAGATTACAAATCTTATCT
57547845 AAGATTGCAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
22 10 0.50
23 10 0.50
ACGTcount: A:0.33, C:0.18, G:0.07, T:0.42
Consensus pattern (22 bp):
TCTAAGATTACAAATCTTATCT
Found at i:57547847 original size:19 final size:19
Alignment explanation
Indices: 57547823--57547878 Score: 103
Period size: 19 Copynumber: 2.9 Consensus size: 19
57547813 AATCTTATCT
*
57547823 TCTAAGATTGCATATCTTA
1 TCTAAGATTGCATATCCTA
57547842 TCTAAGATTGCATATCCTA
1 TCTAAGATTGCATATCCTA
57547861 TCTAAGATTGCATATCCT
1 TCTAAGATTGCATATCCT
57547879 TTTTCAAGTA
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
19 36 1.00
ACGTcount: A:0.30, C:0.20, G:0.11, T:0.39
Consensus pattern (19 bp):
TCTAAGATTGCATATCCTA
Found at i:57548339 original size:21 final size:21
Alignment explanation
Indices: 57548313--57548352 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
57548303 TGCTATATTT
*
57548313 AGCTTTAATCCACTCCACTTC
1 AGCTTTAACCCACTCCACTTC
*
57548334 AGCTTTAACCCATTCCACT
1 AGCTTTAACCCACTCCACT
57548353 GCAAAGCTAG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.25, C:0.38, G:0.05, T:0.33
Consensus pattern (21 bp):
AGCTTTAACCCACTCCACTTC
Found at i:57548403 original size:72 final size:72
Alignment explanation
Indices: 57548258--57548394 Score: 175
Period size: 72 Copynumber: 1.9 Consensus size: 72
57548248 GATTCACTGC
* * * * * * * *
57548258 CTTCAGCTTTAATCTATTCCACTGCAACGCCAAGGAGATAGGATTTGCTATATTTAGCTTTAATC
1 CTTCAGCTTTAACCCATTCCACTGCAAAGCCAAGGAAACAAGATTCGCTACATTTAGCTTTAATC
57548323 CACTCCA
66 CACTCCA
* * *
57548330 CTTCAGCTTTAACCCATTCCACTGCAAAGCTAGGGAAACAAGATTCGCTACCTTTAGCTTTAATC
1 CTTCAGCTTTAACCCATTCCACTGCAAAGCCAAGGAAACAAGATTCGCTACATTTAGCTTTAATC
57548395 TGTTCCACTA
Statistics
Matches: 54, Mismatches: 11, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
72 54 1.00
ACGTcount: A:0.28, C:0.26, G:0.14, T:0.31
Consensus pattern (72 bp):
CTTCAGCTTTAACCCATTCCACTGCAAAGCCAAGGAAACAAGATTCGCTACATTTAGCTTTAATC
CACTCCA
Found at i:57548737 original size:46 final size:46
Alignment explanation
Indices: 57548602--57548843 Score: 286
Period size: 46 Copynumber: 5.2 Consensus size: 46
57548592 ATTCGTTGCT
* * * * *
57548602 ATCTACTATGACGCCATGGAAATAAAATTCGCTGCCCTCAGCTTCA
1 ATCTATTACGACGCCATGGAAATGAGATTCGCTGCCCTCAGCTTTA
* * * *
57548648 ATTTATTCCACTGCAACGCCAAGGAAATGAGATTCACAGCCCTCAGCTTTA
1 ATCTATT--AC-G--ACGCCATGGAAATGAGATTCGCTGCCCTCAGCTTTA
* *
57548699 ATCTATTACGATGTCATGGAAATGAGATTCGCTGCCCTCAGCTTTA
1 ATCTATTACGACGCCATGGAAATGAGATTCGCTGCCCTCAGCTTTA
* * *
57548745 ATCTACTACGACGCCATGGAAATGAGACTCGTTGCCCTCAGCTTTA
1 ATCTATTACGACGCCATGGAAATGAGATTCGCTGCCCTCAGCTTTA
* * *
57548791 ATCTACTACGACGCCATGGAAATGAGATTCGCTGCCCACAGCTTCA
1 ATCTATTACGACGCCATGGAAATGAGATTCGCTGCCCTCAGCTTTA
57548837 ATCTATT
1 ATCTATT
57548844 CCACTGCAAT
Statistics
Matches: 166, Mismatches: 25, Indels: 10
0.83 0.12 0.05
Matches are distributed among these distances:
46 125 0.75
48 2 0.01
49 3 0.02
51 36 0.22
ACGTcount: A:0.29, C:0.27, G:0.17, T:0.27
Consensus pattern (46 bp):
ATCTATTACGACGCCATGGAAATGAGATTCGCTGCCCTCAGCTTTA
Found at i:57548793 original size:92 final size:95
Alignment explanation
Indices: 57548602--57548866 Score: 329
Period size: 92 Copynumber: 2.8 Consensus size: 95
57548592 ATTCGTTGCT
* * * *
57548602 ATCTACTATGACGCCATGGAAATAAAATTCGCTGCCCTCAGCTTCAATTTATTCCACTGCAACGC
1 ATCTACTACGACGCCATGGAAATGAGATTCGCTGCCCTCAGCTTCAATCTA-TCCACTG-AACGC
*
57548667 CAAGGAAATGAGATTCACAGCCCTCAGCTTTA
64 CAAGGAAATGAGACTCACAGCCCTCAGCTTTA
* * * * *
57548699 ATCTATTACGATGTCATGGAAATGAGATTCGCTGCCCTCAGCTTTAATCTA-CTAC-G-ACGCCA
1 ATCTACTACGACGCCATGGAAATGAGATTCGCTGCCCTCAGCTTCAATCTATCCACTGAACGCCA
* ***
57548761 TGGAAATGAGACTCGTTGCCCTCAGCTTTA
66 AGGAAATGAGACTCACAGCCCTCAGCTTTA
* *
57548791 ATCTACTACGACGCCATGGAAATGAGATTCGCTGCCCACAGCTTCAATCTATTCCACTGCAATGC
1 ATCTACTACGACGCCATGGAAATGAGATTCGCTGCCCTCAGCTTCAATCTA-TCCACTG-AACGC
57548856 CAAGGAAATGA
64 CAAGGAAATGA
57548867 TATTGGTGTC
Statistics
Matches: 141, Mismatches: 22, Indels: 10
0.82 0.13 0.06
Matches are distributed among these distances:
92 77 0.55
94 4 0.03
95 4 0.03
97 56 0.40
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.26
Consensus pattern (95 bp):
ATCTACTACGACGCCATGGAAATGAGATTCGCTGCCCTCAGCTTCAATCTATCCACTGAACGCCA
AGGAAATGAGACTCACAGCCCTCAGCTTTA
Found at i:57551210 original size:16 final size:17
Alignment explanation
Indices: 57551185--57551221 Score: 58
Period size: 16 Copynumber: 2.2 Consensus size: 17
57551175 TGGCCTCTCC
*
57551185 TTTTCCTTTTCTTTT-T
1 TTTTCATTTTCTTTTCT
57551201 TTTTCATTTTCTTTTCT
1 TTTTCATTTTCTTTTCT
57551218 TTTT
1 TTTT
57551222 TCATCATTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 14 0.74
17 5 0.26
ACGTcount: A:0.03, C:0.16, G:0.00, T:0.81
Consensus pattern (17 bp):
TTTTCATTTTCTTTTCT
Found at i:57551215 original size:21 final size:21
Alignment explanation
Indices: 57551185--57551251 Score: 75
Period size: 21 Copynumber: 3.2 Consensus size: 21
57551175 TGGCCTCTCC
**
57551185 TTTTCCTTTTCTTTTTTTTTCA
1 TTTT-CTTTTCTTTTTTCATCA
57551207 TTTTCTTTTCTTTTTTCATCA
1 TTTTCTTTTCTTTTTTCATCA
*
57551228 TTTTCATTTTC-ATTTTCAT-A
1 TTTTC-TTTTCTTTTTTCATCA
57551248 TTTT
1 TTTT
57551252 TTATTTTTAA
Statistics
Matches: 41, Mismatches: 3, Indels: 4
0.85 0.06 0.08
Matches are distributed among these distances:
20 5 0.12
21 27 0.66
22 9 0.22
ACGTcount: A:0.10, C:0.16, G:0.00, T:0.73
Consensus pattern (21 bp):
TTTTCTTTTCTTTTTTCATCA
Found at i:57551246 original size:12 final size:11
Alignment explanation
Indices: 57551185--57551244 Score: 54
Period size: 11 Copynumber: 5.5 Consensus size: 11
57551175 TGGCCTCTCC
57551185 TTTTCCTTTTC-
1 TTTT-CTTTTCA
*
57551196 TTTTTTTTTCA
1 TTTTCTTTTCA
57551207 TTTTCTTTTC-
1 TTTTCTTTTCA
*
57551217 TTTT-TTCATCA
1 TTTTCTT-TTCA
57551228 TTTTCATTTTCA
1 TTTTC-TTTTCA
57551240 TTTTC
1 TTTTC
57551245 ATATTTTTTA
Statistics
Matches: 40, Mismatches: 4, Indels: 9
0.75 0.08 0.17
Matches are distributed among these distances:
9 2 0.05
10 11 0.28
11 17 0.43
12 8 0.20
13 2 0.05
ACGTcount: A:0.08, C:0.18, G:0.00, T:0.73
Consensus pattern (11 bp):
TTTTCTTTTCA
Found at i:57553833 original size:16 final size:16
Alignment explanation
Indices: 57553808--57553842 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
57553798 TTCTATGATG
*
57553808 AAATGCCATGCAGTCA
1 AAATGCCATGCAGCCA
*
57553824 AAATGTCATGCAGCCA
1 AAATGCCATGCAGCCA
57553840 AAA
1 AAA
57553843 CAAAACATAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.43, C:0.23, G:0.17, T:0.17
Consensus pattern (16 bp):
AAATGCCATGCAGCCA
Found at i:57555343 original size:23 final size:23
Alignment explanation
Indices: 57555317--57555370 Score: 72
Period size: 23 Copynumber: 2.3 Consensus size: 23
57555307 GTTCAAAATT
*
57555317 TTAAAATAAACAATATATATGAG
1 TTAAAATAAACAATATATATGAA
* *
57555340 TTAAAACAAATAATATATATGAA
1 TTAAAATAAACAATATATATGAA
57555363 TGTAAAAT
1 T-TAAAAT
57555371 TTAATACAAA
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
23 21 0.81
24 5 0.19
ACGTcount: A:0.57, C:0.04, G:0.07, T:0.31
Consensus pattern (23 bp):
TTAAAATAAACAATATATATGAA
Found at i:57556334 original size:18 final size:19
Alignment explanation
Indices: 57556295--57556334 Score: 55
Period size: 20 Copynumber: 2.1 Consensus size: 19
57556285 AACGAAAAAC
57556295 AAAATAAGAACAAGCCACAG
1 AAAATAAGAAC-AGCCACAG
*
57556315 AAAATAAGAAC-GCCAGAG
1 AAAATAAGAACAGCCACAG
57556333 AA
1 AA
57556335 GGAGAAATTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 8 0.42
20 11 0.58
ACGTcount: A:0.60, C:0.17, G:0.17, T:0.05
Consensus pattern (19 bp):
AAAATAAGAACAGCCACAG
Found at i:57556566 original size:19 final size:19
Alignment explanation
Indices: 57556521--57556573 Score: 90
Period size: 18 Copynumber: 2.8 Consensus size: 19
57556511 AATCTTATCT
*
57556521 TCTAAGATTGCATATCTTA
1 TCTAAGATTGCATATCCTA
57556540 TC-AAGATTGCATATCCTA
1 TCTAAGATTGCATATCCTA
57556558 TCTAAGATTGCATATC
1 TCTAAGATTGCATATC
57556574 ATTTTTTAAG
Statistics
Matches: 32, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
18 17 0.53
19 15 0.47
ACGTcount: A:0.32, C:0.19, G:0.11, T:0.38
Consensus pattern (19 bp):
TCTAAGATTGCATATCCTA
Found at i:57560763 original size:2 final size:2
Alignment explanation
Indices: 57560756--57560802 Score: 94
Period size: 2 Copynumber: 23.5 Consensus size: 2
57560746 CTTAACTAAC
57560756 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
57560798 TA TA T
1 TA TA T
57560803 GGTGGAAGAA
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 45 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:57573251 original size:38 final size:38
Alignment explanation
Indices: 57573191--57573266 Score: 89
Period size: 38 Copynumber: 2.0 Consensus size: 38
57573181 TATCTCAGAT
* ** *
57573191 ATGGTCTTACATGGGAGTTCTCATATAGGTGCCCATGC
1 ATGGTCTTACAGGGGACCTCTCATATAGGTGCCAATGC
* * *
57573229 ATGGTCTTACGGGGGACCTCTCATCTCGGTGCCAATGC
1 ATGGTCTTACAGGGGACCTCTCATATAGGTGCCAATGC
57573267 CATGTCCCAG
Statistics
Matches: 31, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
38 31 1.00
ACGTcount: A:0.18, C:0.25, G:0.28, T:0.29
Consensus pattern (38 bp):
ATGGTCTTACAGGGGACCTCTCATATAGGTGCCAATGC
Found at i:57573303 original size:50 final size:50
Alignment explanation
Indices: 57573228--57573407 Score: 256
Period size: 50 Copynumber: 3.5 Consensus size: 50
57573218 GGTGCCCATG
**
57573228 CATGGTCTTACGGGGGACCTCTCATCTCGGTGCCAATGCCATGTCCCAGA
1 CATGGTCTTACATGGGACCTCTCATCTCGGTGCCAATGCCATGTCCCAGA
57573278 CATGGTCTTACATGGGACCTCTCATCTCGGTGCCAATGCCATGTCCCAGA
1 CATGGTCTTACATGGGACCTCTCATCTCGGTGCCAATGCCATGTCCCAGA
* *
57573328 CATGGTCTTACATGGGACCTCTCATAATCTCAATGATGCCAATGTCATGTCCCAGA
1 CATGGTCTTACATGGGACCTCTC---ATCTC---GGTGCCAATGCCATGTCCCAGA
57573384 CATGGTCTTACATGGGA--TCTCATC
1 CATGGTCTTACATGGGACCTCTCATC
57573408 CTCTTAATGT
Statistics
Matches: 120, Mismatches: 4, Indels: 11
0.89 0.03 0.08
Matches are distributed among these distances:
50 71 0.59
51 3 0.03
53 5 0.04
54 4 0.03
56 37 0.31
ACGTcount: A:0.22, C:0.29, G:0.22, T:0.27
Consensus pattern (50 bp):
CATGGTCTTACATGGGACCTCTCATCTCGGTGCCAATGCCATGTCCCAGA
Found at i:57575162 original size:34 final size:34
Alignment explanation
Indices: 57575101--57575183 Score: 105
Period size: 34 Copynumber: 2.5 Consensus size: 34
57575091 TTGGTGTTAT
* *
57575101 TAATATA-ATAATATATATATGCATGCATGGGTG
1 TAATATATATAATATAAATATACATGCATGGGTG
* *
57575134 TAATATATATAATATAAATTTACGTGCATGGGTG
1 TAATATATATAATATAAATATACATGCATGGGTG
* *
57575168 TTATATGTATAATATA
1 TAATATATATAATATA
57575184 TTTGAGTGGG
Statistics
Matches: 43, Mismatches: 6, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
33 7 0.16
34 36 0.84
ACGTcount: A:0.40, C:0.05, G:0.16, T:0.40
Consensus pattern (34 bp):
TAATATATATAATATAAATATACATGCATGGGTG
Found at i:57576657 original size:43 final size:43
Alignment explanation
Indices: 57576596--57576681 Score: 172
Period size: 43 Copynumber: 2.0 Consensus size: 43
57576586 TCGAGTTTGG
57576596 GACGTCATAATTTCACTTATATTATTTCCACCACATATAATTT
1 GACGTCATAATTTCACTTATATTATTTCCACCACATATAATTT
57576639 GACGTCATAATTTCACTTATATTATTTCCACCACATATAATTT
1 GACGTCATAATTTCACTTATATTATTTCCACCACATATAATTT
57576682 TTAAGTCTTT
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 43 1.00
ACGTcount: A:0.33, C:0.21, G:0.05, T:0.42
Consensus pattern (43 bp):
GACGTCATAATTTCACTTATATTATTTCCACCACATATAATTT
Found at i:57576743 original size:41 final size:41
Alignment explanation
Indices: 57576697--57576778 Score: 155
Period size: 41 Copynumber: 2.0 Consensus size: 41
57576687 TCTTTCAATT
*
57576697 TAGTCCTTGTTTCTATAAAAATTTATATTTTTCATAGTTTC
1 TAGTCCTTGTTTCTATAAAAAATTATATTTTTCATAGTTTC
57576738 TAGTCCTTGTTTCTATAAAAAATTATATTTTTCATAGTTTC
1 TAGTCCTTGTTTCTATAAAAAATTATATTTTTCATAGTTTC
57576779 ACTTATTCAA
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 40 1.00
ACGTcount: A:0.28, C:0.12, G:0.07, T:0.52
Consensus pattern (41 bp):
TAGTCCTTGTTTCTATAAAAAATTATATTTTTCATAGTTTC
Found at i:57587900 original size:3 final size:3
Alignment explanation
Indices: 57587894--57587931 Score: 53
Period size: 3 Copynumber: 13.3 Consensus size: 3
57587884 GAGAGAAAGG
*
57587894 AGA AGA AG- AGA AGA AGA AAA AG- AGA AGA AGA AGA AGA A
1 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA A
57587932 ACAAAGAAAA
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
2 4 0.13
3 27 0.87
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (3 bp):
AGA
Found at i:57587911 original size:14 final size:14
Alignment explanation
Indices: 57587894--57587930 Score: 65
Period size: 14 Copynumber: 2.6 Consensus size: 14
57587884 GAGAGAAAGG
57587894 AGAAGAAGAGAAGA
1 AGAAGAAGAGAAGA
*
57587908 AGAAAAAGAGAAGA
1 AGAAGAAGAGAAGA
57587922 AGAAGAAGA
1 AGAAGAAGA
57587931 AACAAAGAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (14 bp):
AGAAGAAGAGAAGA
Found at i:57587938 original size:17 final size:17
Alignment explanation
Indices: 57587902--57587939 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 17
57587892 GGAGAAGAAG
*
57587902 AGAAGAAGAAAAAGAGA
1 AGAAGAAGAAAAACAGA
57587919 AGAAGAAGAAGAAACA-A
1 AGAAGAAGAA-AAACAGA
57587936 AGAA
1 AGAA
57587940 AAAAGGTAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 15 0.79
18 4 0.21
ACGTcount: A:0.71, C:0.03, G:0.26, T:0.00
Consensus pattern (17 bp):
AGAAGAAGAAAAACAGA
Found at i:57587939 original size:31 final size:30
Alignment explanation
Indices: 57587877--57587943 Score: 75
Period size: 31 Copynumber: 2.2 Consensus size: 30
57587867 GGTAGAGAAA
* *
57587877 AAAAAAAGAGAGAAAGGAGAAGAAGAGAAG
1 AAAAAAAGAGAGAAAGAAGAAGAAGAAAAG
57587907 AAGAAAAAGAGA-AGAAGAAGAAGAA-ACAAAG
1 AA-AAAAAGAGAGA-AAGAAGAAGAAGA-AAAG
57587938 AAAAAA
1 AAAAAA
57587944 GGTAATGTAT
Statistics
Matches: 32, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
30 8 0.25
31 24 0.75
ACGTcount: A:0.72, C:0.01, G:0.27, T:0.00
Consensus pattern (30 bp):
AAAAAAAGAGAGAAAGAAGAAGAAGAAAAG
Found at i:57588125 original size:22 final size:22
Alignment explanation
Indices: 57588098--57588164 Score: 95
Period size: 22 Copynumber: 3.2 Consensus size: 22
57588088 TGGATTAGAA
*
57588098 TTTTGTATGAATATTCTAATTT
1 TTTTGTATGAATATTGTAATTT
57588120 TTTTGTATGAATATTGTAA--T
1 TTTTGTATGAATATTGTAATTT
*
57588140 TTTT-TATGAATATTGTAATTA
1 TTTTGTATGAATATTGTAATTT
57588161 TTTT
1 TTTT
57588165 ATAATTAAAT
Statistics
Matches: 41, Mismatches: 2, Indels: 5
0.85 0.04 0.10
Matches are distributed among these distances:
19 14 0.34
20 5 0.12
21 4 0.10
22 18 0.44
ACGTcount: A:0.28, C:0.01, G:0.10, T:0.60
Consensus pattern (22 bp):
TTTTGTATGAATATTGTAATTT
Found at i:57588243 original size:101 final size:101
Alignment explanation
Indices: 57588079--57588265 Score: 313
Period size: 101 Copynumber: 1.9 Consensus size: 101
57588069 CTATTTAGTG
* *
57588079 TTTATAGTTTGGATTAGAATTTTGTATGAATATTCTAATTTTTTTGTATGAATATTGTAATTTTT
1 TTTATAGTTTGGATTAGAATTTTGTATGAATATTCTAATTTTTTTGTATGAATATCGTAATTTTG
57588144 TATGAATATTGTAATTATTTTATAATTAAATTTGTA
66 TATGAATATTGTAATTATTTTATAATTAAATTTGTA
* *
57588180 TTTATAGTTTTGGATTAGTATTTTGTATGAATATTGTAA-TTTTTTGTATGAATATCGTAATTTT
1 TTTATAG-TTTGGATTAGAATTTTGTATGAATATTCTAATTTTTTTGTATGAATATCGTAATTTT
*
57588244 GTATGAATATTGTAATTTTTTT
65 GTATGAATATTGTAATTATTTT
57588266 GTATGGATAT
Statistics
Matches: 80, Mismatches: 5, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
101 51 0.64
102 29 0.36
ACGTcount: A:0.29, C:0.01, G:0.13, T:0.56
Consensus pattern (101 bp):
TTTATAGTTTGGATTAGAATTTTGTATGAATATTCTAATTTTTTTGTATGAATATCGTAATTTTG
TATGAATATTGTAATTATTTTATAATTAAATTTGTA
Found at i:57588290 original size:49 final size:49
Alignment explanation
Indices: 57588237--57588358 Score: 181
Period size: 49 Copynumber: 2.5 Consensus size: 49
57588227 ATGAATATCG
* * *
57588237 TAATTTTGTATGAATATTGTAATTTTTTTGTATGGATATTGTAATATTA
1 TAATTTTGTATGAATATTGTAATATTTTTGTACGAATATTGTAATATTA
* * * *
57588286 TAATTTTATATGAATATTGCAATATTTTTGTACGAATATTGTAATTTTG
1 TAATTTTGTATGAATATTGTAATATTTTTGTACGAATATTGTAATATTA
57588335 TAATTTTGTATGAATATTGTAATA
1 TAATTTTGTATGAATATTGTAATA
57588359 CTGTTGAGGA
Statistics
Matches: 64, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
49 64 1.00
ACGTcount: A:0.33, C:0.02, G:0.13, T:0.52
Consensus pattern (49 bp):
TAATTTTGTATGAATATTGTAATATTTTTGTACGAATATTGTAATATTA
Found at i:57588302 original size:27 final size:27
Alignment explanation
Indices: 57588237--57588358 Score: 120
Period size: 27 Copynumber: 4.9 Consensus size: 27
57588227 ATGAATATCG
57588237 TAATTTTGTATGAATATTGT-A-ATT-
1 TAATTTTGTATGAATATTGTAATATTA
*
57588261 T--TTTTGTATGGATATTGTAATATTA
1 TAATTTTGTATGAATATTGTAATATTA
* *
57588286 TAATTTTATATGAATATTG-CA-A-TA
1 TAATTTTGTATGAATATTGTAATATTA
* * *
57588310 T--TTTTGTACGAATATTGTAATTTTG
1 TAATTTTGTATGAATATTGTAATATTA
57588335 TAATTTTGTATGAATATTGTAATA
1 TAATTTTGTATGAATATTGTAATA
57588359 CTGTTGAGGA
Statistics
Matches: 77, Mismatches: 11, Indels: 17
0.73 0.10 0.16
Matches are distributed among these distances:
22 30 0.39
23 2 0.03
24 7 0.09
25 4 0.05
26 1 0.01
27 33 0.43
ACGTcount: A:0.33, C:0.02, G:0.13, T:0.52
Consensus pattern (27 bp):
TAATTTTGTATGAATATTGTAATATTA
Found at i:57588335 original size:19 final size:19
Alignment explanation
Indices: 57588279--57588336 Score: 53
Period size: 22 Copynumber: 2.9 Consensus size: 19
57588269 TGGATATTGT
* * *
57588279 AATATTATAATTTTATATG
1 AATATTGTAATTTTGTACG
*
57588298 AATATTGCAATATTTTTGTACG
1 AATATTG---TAATTTTGTACG
57588320 AATATTGTAATTTTGTA
1 AATATTGTAATTTTGTA
57588337 ATTTTGTATG
Statistics
Matches: 31, Mismatches: 5, Indels: 6
0.74 0.12 0.14
Matches are distributed among these distances:
19 15 0.48
22 16 0.52
ACGTcount: A:0.36, C:0.03, G:0.10, T:0.50
Consensus pattern (19 bp):
AATATTGTAATTTTGTACG
Found at i:57588356 original size:19 final size:19
Alignment explanation
Indices: 57588096--57588281 Score: 128
Period size: 19 Copynumber: 9.2 Consensus size: 19
57588086 TTTGGATTAG
*
57588096 AATTTTGTATGAATATTCT
1 AATTTTGTATGAATATTGT
57588115 AATTTTTTTGTATGAATATTGT
1 AA---TTTTGTATGAATATTGT
*
57588137 AATTTTTTATGAATATTGT
1 AATTTTGTATGAATATTGT
*
57588156 AATTATTTTAT-AATTAAATTTGT
1 AATT-TTGTATGAA-T--A-TTGT
* * *
57588179 -ATTTATAGTTTTGGAT-TAGT
1 AATTT-T-G-TATGAATATTGT
57588199 -ATTTTGTATGAATATTGT
1 AATTTTGTATGAATATTGT
*
57588217 AATTTTTTGTATGAATATCGT
1 AA--TTTTGTATGAATATTGT
57588238 AATTTTGTATGAATATTGT
1 AATTTTGTATGAATATTGT
*
57588257 AATTTTTTTGTATGGATATTGT
1 AA---TTTTGTATGAATATTGT
57588279 AAT
1 AAT
57588282 ATTATAATTT
Statistics
Matches: 136, Mismatches: 12, Indels: 38
0.73 0.06 0.20
Matches are distributed among these distances:
17 5 0.04
18 4 0.03
19 45 0.33
20 14 0.10
21 19 0.14
22 41 0.30
23 4 0.03
24 3 0.02
25 1 0.01
ACGTcount: A:0.30, C:0.01, G:0.13, T:0.55
Consensus pattern (19 bp):
AATTTTGTATGAATATTGT
Found at i:57588557 original size:28 final size:27
Alignment explanation
Indices: 57588492--57588558 Score: 116
Period size: 27 Copynumber: 2.4 Consensus size: 27
57588482 CATATTTATG
57588492 TAATGATTTTTTTATGTAAATAAAATTA
1 TAATG-TTTTTTTATGTAAATAAAATTA
*
57588520 TAATGGTTTTTTATGTAAATAAAATTA
1 TAATGTTTTTTTATGTAAATAAAATTA
57588547 TAATGTTTTTTT
1 TAATGTTTTTTT
57588559 TTTATTTTGC
Statistics
Matches: 37, Mismatches: 2, Indels: 1
0.93 0.05 0.03
Matches are distributed among these distances:
27 32 0.86
28 5 0.14
ACGTcount: A:0.37, C:0.00, G:0.09, T:0.54
Consensus pattern (27 bp):
TAATGTTTTTTTATGTAAATAAAATTA
Found at i:57591526 original size:20 final size:21
Alignment explanation
Indices: 57591500--57591552 Score: 65
Period size: 21 Copynumber: 2.6 Consensus size: 21
57591490 CCAAAATACC
*
57591500 TTTTTTTTCTTCT-TTTCCTT
1 TTTTTTTTCTTCTGCTTCCTT
57591520 CTTTTTTTTCTTCTGCTTCC-T
1 -TTTTTTTTCTTCTGCTTCCTT
*
57591541 TTTTATTTCTTC
1 TTTTTTTTCTTC
57591553 CGTTTCTCTA
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
20 11 0.38
21 14 0.48
22 4 0.14
ACGTcount: A:0.02, C:0.23, G:0.02, T:0.74
Consensus pattern (21 bp):
TTTTTTTTCTTCTGCTTCCTT
Found at i:57591538 original size:18 final size:19
Alignment explanation
Indices: 57591502--57591552 Score: 59
Period size: 19 Copynumber: 2.6 Consensus size: 19
57591492 AAAATACCTT
*
57591502 TTTTTTCTTCTTTTCCTT-C
1 TTTTTT-TTCTTCTCCTTCC
*
57591521 TTTTTTTTCTTCTGCTTCC
1 TTTTTTTTCTTCTCCTTCC
57591540 TTTTTATTTCTTC
1 TTTTT-TTTCTTC
57591553 CGTTTCTCTA
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
18 9 0.32
19 12 0.43
20 7 0.25
ACGTcount: A:0.02, C:0.24, G:0.02, T:0.73
Consensus pattern (19 bp):
TTTTTTTTCTTCTCCTTCC
Found at i:57591661 original size:27 final size:27
Alignment explanation
Indices: 57591631--57591692 Score: 70
Period size: 27 Copynumber: 2.3 Consensus size: 27
57591621 CTCAGTATGA
57591631 CACCAATAATGGCGCCTCCCAGATAGG
1 CACCAATAATGGCGCCTCCCAGATAGG
** * **
57591658 CACCACCATTGGCGCCTCTGAGATAGG
1 CACCAATAATGGCGCCTCCCAGATAGG
*
57591685 CACGAATA
1 CACCAATA
57591693 CTATGTATTA
Statistics
Matches: 27, Mismatches: 8, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.29, C:0.32, G:0.23, T:0.16
Consensus pattern (27 bp):
CACCAATAATGGCGCCTCCCAGATAGG
Found at i:57593006 original size:21 final size:22
Alignment explanation
Indices: 57592973--57593020 Score: 62
Period size: 21 Copynumber: 2.2 Consensus size: 22
57592963 TTTTTTAAAC
57592973 TAATAATTCTAAATTAAATTA-
1 TAATAATTCTAAATTAAATTAG
* * *
57592994 TAATTATTTTAAATTAATTTAG
1 TAATAATTCTAAATTAAATTAG
57593016 TAATA
1 TAATA
57593021 TGATGAAAAC
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
21 18 0.82
22 4 0.18
ACGTcount: A:0.48, C:0.02, G:0.02, T:0.48
Consensus pattern (22 bp):
TAATAATTCTAAATTAAATTAG
Found at i:57597863 original size:13 final size:13
Alignment explanation
Indices: 57597837--57597910 Score: 76
Period size: 13 Copynumber: 5.7 Consensus size: 13
57597827 CTCAAATTTT
*
57597837 TCAAAAGCAATTC
1 TCAAAAGCACTTC
* *
57597850 TCAAGAGTACTTC
1 TCAAAAGCACTTC
*
57597863 TCAAAAGCACTTT
1 TCAAAAGCACTTC
* *
57597876 TCCACAGCACTTC
1 TCAAAAGCACTTC
* *
57597889 TCAAAAGTACTTT
1 TCAAAAGCACTTC
57597902 TCAAAAGCA
1 TCAAAAGCA
57597911 ATGAAGAACT
Statistics
Matches: 47, Mismatches: 14, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
13 47 1.00
ACGTcount: A:0.38, C:0.26, G:0.09, T:0.27
Consensus pattern (13 bp):
TCAAAAGCACTTC
Found at i:57597910 original size:26 final size:26
Alignment explanation
Indices: 57597837--57597910 Score: 85
Period size: 26 Copynumber: 2.8 Consensus size: 26
57597827 CTCAAATTTT
* * * *
57597837 TCAAAAGCAATTCTCAAGAGTACTTC
1 TCAAAAGCACTTTTCAAAAGCACTTC
* *
57597863 TCAAAAGCACTTTTCCACAGCACTTC
1 TCAAAAGCACTTTTCAAAAGCACTTC
*
57597889 TCAAAAGTACTTTTCAAAAGCA
1 TCAAAAGCACTTTTCAAAAGCA
57597911 ATGAAGAACT
Statistics
Matches: 40, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 40 1.00
ACGTcount: A:0.38, C:0.26, G:0.09, T:0.27
Consensus pattern (26 bp):
TCAAAAGCACTTTTCAAAAGCACTTC
Found at i:57600526 original size:63 final size:63
Alignment explanation
Indices: 57600447--57600622 Score: 210
Period size: 63 Copynumber: 2.8 Consensus size: 63
57600437 CACACGTCTT
** ** *
57600447 TGTCTCTAGCTTGTGTGACTTTAATTCCAAAACAATGAGTTACATGGCTTGGACACACGCCCG
1 TGTCTCTAGCCCGTGTGACTTTAATTCCAAAACAATGAGTTACACAGCCTGGACACACGCCCG
* * * * *
57600510 TGTCTTTGGCCCGTGTGA-TTCTAATTCCAAAACAGTAAGTTACACAGCCTGGACACACGCTCG
1 TGTCTCTAGCCCGTGTGACTT-TAATTCCAAAACAATGAGTTACACAGCCTGGACACACGCCCG
* * * *
57600573 TGTCTCTAGCTCGTGTGACTCTAATTCCAAAATAATGAGTTACACGGCCT
1 TGTCTCTAGCCCGTGTGACTTTAATTCCAAAACAATGAGTTACACAGCCT
57600623 TGTGCACGGT
Statistics
Matches: 93, Mismatches: 18, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
62 2 0.02
63 90 0.97
64 1 0.01
ACGTcount: A:0.26, C:0.25, G:0.20, T:0.30
Consensus pattern (63 bp):
TGTCTCTAGCCCGTGTGACTTTAATTCCAAAACAATGAGTTACACAGCCTGGACACACGCCCG
Found at i:57601151 original size:21 final size:21
Alignment explanation
Indices: 57601126--57601166 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
57601116 GGAGTTATCA
57601126 AAAAGAAAAAGAAAAAGAACC
1 AAAAGAAAAAGAAAAAGAACC
* *
57601147 AAAAGAAGAAGAAGAAGAAC
1 AAAAGAAAAAGAAAAAGAAC
57601167 AGACGCTTTA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.73, C:0.07, G:0.20, T:0.00
Consensus pattern (21 bp):
AAAAGAAAAAGAAAAAGAACC
Found at i:57603288 original size:30 final size:30
Alignment explanation
Indices: 57603231--57603288 Score: 71
Period size: 30 Copynumber: 1.9 Consensus size: 30
57603221 ACACGTGTAT
* ***
57603231 AGAAAACTTGCCCAGTTGGATGCGCTTTGC
1 AGAAAACTCGCCCAGTTGGACAAGCTTTGC
*
57603261 AGAAAGCTCGCCCAGTTGGACAAGCTTT
1 AGAAAACTCGCCCAGTTGGACAAGCTTT
57603289 CCCTAAAAAT
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
30 23 1.00
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (30 bp):
AGAAAACTCGCCCAGTTGGACAAGCTTTGC
Found at i:57603344 original size:29 final size:30
Alignment explanation
Indices: 57603312--57603371 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
57603302 CTTATTTCCT
*
57603312 TAAAT-AATTTTAAAACCGGCCTAAAAGCC
1 TAAATAAATTTCAAAACCGGCCTAAAAGCC
** *
57603341 TAAATAAATTTCAAAATGGGCCTATAAGCC
1 TAAATAAATTTCAAAACCGGCCTAAAAGCC
57603371 T
1 T
57603372 TATTTAGCCT
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
29 5 0.19
30 21 0.81
ACGTcount: A:0.43, C:0.18, G:0.12, T:0.27
Consensus pattern (30 bp):
TAAATAAATTTCAAAACCGGCCTAAAAGCC
Found at i:57605091 original size:14 final size:15
Alignment explanation
Indices: 57605069--57605145 Score: 52
Period size: 14 Copynumber: 5.0 Consensus size: 15
57605059 CAATCAAACA
57605069 CCAGAAAAT-ATTTT
1 CCAGAAAATCATTTT
*
57605083 CCAGTAAATCATTTT
1 CCAGAAAATCATTTT
*
57605098 ACAGAAAAGTAAAACATTTT
1 CCAGAAAA-T----CATTTT
57605118 CCAG-AAATCATTTT
1 CCAGAAAATCATTTT
* *
57605132 ACGGAAAAT-ATTTT
1 CCAGAAAATCATTTT
57605146 ACTGGCAATC
Statistics
Matches: 50, Mismatches: 6, Indels: 14
0.71 0.09 0.20
Matches are distributed among these distances:
14 21 0.42
15 15 0.30
16 1 0.02
18 1 0.02
19 3 0.06
20 9 0.18
ACGTcount: A:0.43, C:0.14, G:0.09, T:0.34
Consensus pattern (15 bp):
CCAGAAAATCATTTT
Found at i:57605110 original size:20 final size:20
Alignment explanation
Indices: 57605085--57605124 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
57605075 AATATTTTCC
*
57605085 AGTAAATCATTTTACAGAAA
1 AGTAAAACATTTTACAGAAA
*
57605105 AGTAAAACATTTTCCAGAAA
1 AGTAAAACATTTTACAGAAA
57605125 TCATTTTACG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.50, C:0.12, G:0.10, T:0.28
Consensus pattern (20 bp):
AGTAAAACATTTTACAGAAA
Found at i:57605130 original size:34 final size:35
Alignment explanation
Indices: 57605073--57605139 Score: 109
Period size: 34 Copynumber: 1.9 Consensus size: 35
57605063 CAAACACCAG
*
57605073 AAAATATTTTCCAGTAAATCATTTTACAGAAAAGT
1 AAAACATTTTCCAGTAAATCATTTTACAGAAAAGT
*
57605108 AAAACATTTTCCAG-AAATCATTTTACGGAAAA
1 AAAACATTTTCCAGTAAATCATTTTACAGAAAA
57605140 TATTTTACTG
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
34 17 0.57
35 13 0.43
ACGTcount: A:0.46, C:0.13, G:0.09, T:0.31
Consensus pattern (35 bp):
AAAACATTTTCCAGTAAATCATTTTACAGAAAAGT
Found at i:57606090 original size:28 final size:28
Alignment explanation
Indices: 57606058--57606115 Score: 107
Period size: 28 Copynumber: 2.1 Consensus size: 28
57606048 TAAAAAAAAG
57606058 TATGATATAAATGATAAATAATTTGTGA
1 TATGATATAAATGATAAATAATTTGTGA
*
57606086 TATGATATAAATGATAGATAATTTGTGA
1 TATGATATAAATGATAAATAATTTGTGA
57606114 TA
1 TA
57606116 CAAAATGATG
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.45, C:0.00, G:0.16, T:0.40
Consensus pattern (28 bp):
TATGATATAAATGATAAATAATTTGTGA
Found at i:57606490 original size:49 final size:49
Alignment explanation
Indices: 57606378--57606491 Score: 119
Period size: 49 Copynumber: 2.3 Consensus size: 49
57606368 GTAAAATTGA
*
57606378 AAATAGTGAAAACCATCGTAGCTGAGCCATCCAAGATGGTAGAATATCG
1 AAATAGTGAAAACCATCGTAGCTGAGCCACCCAAGATGGTAGAATATCG
** *
57606427 AAATAGTGTGAACCATCGTTG-TCG-GCCTACCCAAGATGGTA-AAGTAT-G
1 AAATAGTGAAAACCATCGTAGCT-GAGCC-ACCCAAGATGGTAGAA-TATCG
*
57606475 TATATAGTGAAAACCAT
1 -AAATAGTGAAAACCAT
57606492 TATTCCGTGA
Statistics
Matches: 54, Mismatches: 7, Indels: 8
0.78 0.10 0.12
Matches are distributed among these distances:
48 7 0.13
49 47 0.87
ACGTcount: A:0.37, C:0.18, G:0.22, T:0.24
Consensus pattern (49 bp):
AAATAGTGAAAACCATCGTAGCTGAGCCACCCAAGATGGTAGAATATCG
Found at i:57610145 original size:13 final size:13
Alignment explanation
Indices: 57610127--57610153 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
57610117 TGTTCCGTTC
57610127 TGCTCTGTTTTGT
1 TGCTCTGTTTTGT
57610140 TGCTCTGTTTTGT
1 TGCTCTGTTTTGT
57610153 T
1 T
57610154 CTATCTTGTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.00, C:0.15, G:0.22, T:0.63
Consensus pattern (13 bp):
TGCTCTGTTTTGT
Found at i:57613892 original size:5 final size:5
Alignment explanation
Indices: 57613882--57613912 Score: 53
Period size: 5 Copynumber: 6.0 Consensus size: 5
57613872 TAAGAAAGGG
57613882 AAAAT AAAAT AAAAT AAAAT AAAATT AAAAT
1 AAAAT AAAAT AAAAT AAAAT AAAA-T AAAAT
57613913 TGCACATAAT
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
5 20 0.80
6 5 0.20
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (5 bp):
AAAAT
Found at i:57618376 original size:5 final size:5
Alignment explanation
Indices: 57618366--57618390 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
57618356 TAAGAAAGGG
57618366 AAAAT AAAAT AAAAT AAAAT AAAAT
1 AAAAT AAAAT AAAAT AAAAT AAAAT
57618391 TACATATAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (5 bp):
AAAAT
Found at i:57620264 original size:76 final size:76
Alignment explanation
Indices: 57620164--57620314 Score: 178
Period size: 76 Copynumber: 2.0 Consensus size: 76
57620154 AATCGGAAAT
* * * *
57620164 TATATGTATGCCCAACACTTGTCGGT-ATACCCGACAAATATATGTGTGCCCAACACTGGTCAGT
1 TATATGTATGCCCAACACTGGTCGGTGA-ACCCAACAAATATATGTGTGACCAACACTAGTCAGT
57620228 GAATCTGACAAA
65 GAATCTGACAAA
* * *** * * *
57620240 TATATGTGTGCCCAGCACTGGTCGGTGAATTTAATAAATATGTGTGTGACCATCACTAGTCAGTG
1 TATATGTATGCCCAACACTGGTCGGTGAACCCAACAAATATATGTGTGACCAACACTAGTCAGTG
57620305 AATCTGACAA
66 AATCTGACAA
57620315 TATTCAAAAT
Statistics
Matches: 62, Mismatches: 12, Indels: 2
0.82 0.16 0.03
Matches are distributed among these distances:
76 61 0.98
77 1 0.02
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (76 bp):
TATATGTATGCCCAACACTGGTCGGTGAACCCAACAAATATATGTGTGACCAACACTAGTCAGTG
AATCTGACAAA
Found at i:57620269 original size:38 final size:38
Alignment explanation
Indices: 57620164--57620314 Score: 160
Period size: 38 Copynumber: 4.0 Consensus size: 38
57620154 AATCGGAAAT
* * * * *
57620164 TATATGTATGCCCAACACTTGTCGGT-ATACCCGACAAA
1 TATATGTGTGCCCAACACTGGTCAGTGA-ATCTGACAAA
57620202 TATATGTGTGCCCAACACTGGTCAGTGAATCTGACAAA
1 TATATGTGTGCCCAACACTGGTCAGTGAATCTGACAAA
* * * * *
57620240 TATATGTGTGCCCAGCACTGGTCGGTGAATTTAATAAA
1 TATATGTGTGCCCAACACTGGTCAGTGAATCTGACAAA
* * * *
57620278 TATGTGTGTGACCATCACTAGTCAGTGAATCTGACAA
1 TATATGTGTGCCCAACACTGGTCAGTGAATCTGACAA
57620315 TATTCAAAAT
Statistics
Matches: 94, Mismatches: 18, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
38 93 0.99
39 1 0.01
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (38 bp):
TATATGTGTGCCCAACACTGGTCAGTGAATCTGACAAA
Found at i:57629181 original size:30 final size:29
Alignment explanation
Indices: 57629147--57629219 Score: 96
Period size: 30 Copynumber: 2.5 Consensus size: 29
57629137 CATGACACGT
57629147 TTAAATTAAAATTTAAATAA-AAAATTTAAA
1 TTAAATTAAAATTTAAA-AATAAAATTT-AA
*
57629177 TTAAATT-AAATTATAAAAATCAAATTTAA
1 TTAAATTAAAATT-TAAAAATAAAATTTAA
57629206 TTAAATTAAAATTT
1 TTAAATTAAAATTT
57629220 TCTATATATT
Statistics
Matches: 39, Mismatches: 1, Indels: 7
0.83 0.02 0.15
Matches are distributed among these distances:
29 17 0.44
30 22 0.56
ACGTcount: A:0.59, C:0.01, G:0.00, T:0.40
Consensus pattern (29 bp):
TTAAATTAAAATTTAAAAATAAAATTTAA
Found at i:57629194 original size:24 final size:24
Alignment explanation
Indices: 57629146--57629216 Score: 83
Period size: 24 Copynumber: 2.9 Consensus size: 24
57629136 ACATGACACG
57629146 TTTAAATTAAAATTTAAA-TAAAAAA
1 TTTAAATT-AAA-TTAAATTAAAAAA
57629171 TTTAAATTAAATTAAATTATAAAAA
1 TTTAAATTAAATTAAATTA-AAAAA
* *
57629196 -TCAAATTTAATTAAATTAAAA
1 TTTAAATTAAATTAAATTAAAA
57629217 TTTTCTATAT
Statistics
Matches: 42, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
23 8 0.19
24 21 0.50
25 13 0.31
ACGTcount: A:0.61, C:0.01, G:0.00, T:0.38
Consensus pattern (24 bp):
TTTAAATTAAATTAAATTAAAAAA
Found at i:57631893 original size:37 final size:37
Alignment explanation
Indices: 57631843--57631919 Score: 127
Period size: 37 Copynumber: 2.1 Consensus size: 37
57631833 AATATTATGA
* * *
57631843 TTACAAAGTTTAAACATAATAGTGTATCCATTTAATT
1 TTACAAAGTTTAAACATAATACTATATCAATTTAATT
57631880 TTACAAAGTTTAAACATAATACTATATCAATTTAATT
1 TTACAAAGTTTAAACATAATACTATATCAATTTAATT
57631917 TTA
1 TTA
57631920 AAAAATGATA
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.43, C:0.10, G:0.05, T:0.42
Consensus pattern (37 bp):
TTACAAAGTTTAAACATAATACTATATCAATTTAATT
Found at i:57632524 original size:18 final size:18
Alignment explanation
Indices: 57632482--57632524 Score: 50
Period size: 18 Copynumber: 2.4 Consensus size: 18
57632472 AATTATAATT
* *
57632482 TTAAAAATTATAAAAAGA
1 TTAATAATTATAAAAAAA
*
57632500 TTAATAATTGTAAAAAAA
1 TTAATAATTATAAAAAAA
*
57632518 TTTATAA
1 TTAATAA
57632525 ACCCATTTCA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.60, C:0.00, G:0.05, T:0.35
Consensus pattern (18 bp):
TTAATAATTATAAAAAAA
Found at i:57645492 original size:30 final size:30
Alignment explanation
Indices: 57645452--57645606 Score: 197
Period size: 30 Copynumber: 5.2 Consensus size: 30
57645442 ATTCCAACCT
*
57645452 TTTTCATGGCTCGATAGTCGAAGCTATCCC
1 TTTTCGTGGCTCGATAGTCGAAGCTATCCC
*
57645482 TTTTCGTGGCTCGATAGTCGAAGCTATCCA
1 TTTTCGTGGCTCGATAGTCGAAGCTATCCC
* *
57645512 TTTTCATAGCTCGATAG-CTGAAGCTATCCC
1 TTTTCGTGGCTCGATAGTC-GAAGCTATCCC
*
57645542 TTTTCGTGGCTCGATAGTCGAAGCTATCGC
1 TTTTCGTGGCTCGATAGTCGAAGCTATCCC
** * *
57645572 TTTTCGTAACTCGATA-CCTGAAGCTAGCCC
1 TTTTCGTGGCTCGATAGTC-GAAGCTATCCC
57645602 TTTTC
1 TTTTC
57645607 ATTATTTAAT
Statistics
Matches: 109, Mismatches: 13, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
29 2 0.02
30 106 0.97
31 1 0.01
ACGTcount: A:0.20, C:0.26, G:0.20, T:0.34
Consensus pattern (30 bp):
TTTTCGTGGCTCGATAGTCGAAGCTATCCC
Found at i:57645524 original size:60 final size:60
Alignment explanation
Indices: 57645452--57645606 Score: 233
Period size: 60 Copynumber: 2.6 Consensus size: 60
57645442 ATTCCAACCT
*
57645452 TTTTCATGGCTCGATAG-TCGAAGCTATCCCTTTTCGTGGCTCGATAGTCGAAGCTATC-C
1 TTTTCATAGCTCGATAGCT-GAAGCTATCCCTTTTCGTGGCTCGATAGTCGAAGCTATCGC
57645511 ATTTTCATAGCTCGATAGCTGAAGCTATCCCTTTTCGTGGCTCGATAGTCGAAGCTATCGC
1 -TTTTCATAGCTCGATAGCTGAAGCTATCCCTTTTCGTGGCTCGATAGTCGAAGCTATCGC
* * * *
57645572 TTTTCGTAACTCGATACCTGAAGCTAGCCCTTTTC
1 TTTTCATAGCTCGATAGCTGAAGCTATCCCTTTTC
57645607 ATTATTTAAT
Statistics
Matches: 88, Mismatches: 5, Indels: 4
0.91 0.05 0.04
Matches are distributed among these distances:
60 86 0.98
61 2 0.02
ACGTcount: A:0.20, C:0.26, G:0.20, T:0.34
Consensus pattern (60 bp):
TTTTCATAGCTCGATAGCTGAAGCTATCCCTTTTCGTGGCTCGATAGTCGAAGCTATCGC
Done.