Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr09 ID=Chr09-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 70713020
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 1142373 characters in sequence are not A, C, G, or T
File 18 of 226
Found at i:8308932 original size:371 final size:366
Alignment explanation
Indices: 8307852--8309237 Score: 2123
Period size: 367 Copynumber: 3.8 Consensus size: 366
8307842 GATTATTCTA
* * * *
8307852 TGTATTTATGCATGTTTCGCTTTGGACTTTTATTATCTCTTATTCGTGCAGAATACATAAATTCC
1 TGTATTTATGCATGTTTTGCTTTGGACTTTTATTATCTCTTGTTCGTACAGAATACACAAATTCC
* *
8307917 AACTGTAACAACCTGCATTATTGTTGGAACTAAAAAAAGATATATAAATTTAAGAAAGAAAAAAT
66 AACTGTAACAACTTGCATTATTGTTGGAACTAAAAAAAGATATATAAATTTAAGGAAGAAAAAAT
* * * *
8307982 GATTATCGATAAATGGCACCACCTTTTATCAAAGAGGTTTCAATAATAGCATAACGC-CTAACTA
131 GATTATCGACAAATGGCACCACCTCTTACCAAAGAGGTTTCAATAATAGCGTAACGCTC-AACTA
* * * *
8308046 GAATCACGTAAGCTTTTTTTTCCAACGTAAGAATATCTCACGCGTTTTGTGTGCAGAGATTATGG
195 GAATCACGTAAGCTTTTTTTTCCAACGTAAGAATATCTCACGTGCTTCGTGTGCAGAGACTATGG
* *
8308111 GAACAAATAAAGGACATCTTACTAGATTCGCCAAACTCCATTGGGTGTTGCATCAATGACTGATC
260 AAACAAATAAAGGACATCTTACTAGATTCGCCAAACTCCATTGGGTGTTGCATCAATGACTGATG
* * *
8308176 ACACCCACAAAAAGTTCGTAATTAATGAAATCCGCAAAAGGT
325 ACATCTACAAAAAGTTCGTAATTAATGAAATCCGTAAAAGGT
*
8308218 TGTATTTATGCATGTTTTGCGTTGGACTTTTATTATCTCTTGTTCGTACAGAATACACAAATTCC
1 TGTATTTATGCATGTTTTGCTTTGGACTTTTATTATCTCTTGTTCGTACAGAATACACAAATTCC
*
8308283 AACTGTAACAACTTGCATTATTGCTGGAACT-AAAAAAGATATATAAATTTAAGGAAGAAAAAAA
66 AACTGTAACAACTTGCATTATTGTTGGAACTAAAAAAAGATATATAAATTTAAGGAAG--AAAAA
* * * *
8308347 ATTATTATTGACAAATGGCACCACCTCTTACCAAAGAGGTTTTAATAATAGCGTAACGCCCAACT
129 ATGATTATCGACAAATGGCACCACCTCTTACCAAAGAGGTTTCAATAATAGCGTAACGCTCAACT
*
8308412 AGAATCACGTAAGCTTTTTTATT-CAACGTAAGAATATCTCACGTGCTTTGTGTGCAGAGACTAT
194 AGAATCACGTAAGCTTTTTT-TTCCAACGTAAGAATATCTCACGTGCTTCGTGTGCAGAGACTAT
* * * * *
8308476 -GAGAACAAATAAATGATATCTTACTAGATTCGCCGAACTCCATTGGGTGTTGCATTAGTGACTG
258 GGA-AACAAATAAAGGACATCTTACTAGATTCGCCAAACTCCATTGGGTGTTGCATCAATGACTG
**
8308540 ATGACATCTACAAAAAGTTCGTAATTAATGAAATCTATAAAAGGT
322 ATGACATCTACAAAAAGTTCGTAATTAATGAAATCCGTAAAAGGT
* * *
8308585 TGTATTTATGCATGTTTTGCTTTAGACTTTTATTATCTTTTGTTCGTACAGAATACAAAAATTCC
1 TGTATTTATGCATGTTTTGCTTTGGACTTTTATTATCTCTTGTTCGTACAGAATACACAAATTCC
* *
8308650 AACTGTAACAACATGCATTACTGTTGGAACTAAAAAAAAAAGATATATAAAATTTAAGGAAGAAA
66 AACTGTAACAACTTGCATTATTGTTGGAACT---AAAAAAAGATATAT-AAATTTAAGGAAGAAA
* *
8308715 AAATGATTATCAACAAATGGCACCACATCTTACCAAAGAGGTTTCAATAATAGCGTAACGCTCAA
127 AAATGATTATCGACAAATGGCACCACCTCTTACCAAAGAGGTTTCAATAATAGCGTAACGCTCAA
*
8308780 CTAGATTCACGTAAGCTTTTTTTTTCCAACGTAAGAATATCTCACGTGCTTCGTGTGCAGAGACT
192 CTAGAATCACGTAAGC-TTTTTTTTCCAACGTAAGAATATCTCACGTGCTTCGTGTGCAGAGACT
* * *
8308845 ATGGAAACAAATAAGGGACATCTTACTAGATTCACCAAACTCCATTGGGTGTTGCATCAATGGCT
256 ATGGAAACAAATAAAGGACATCTTACTAGATTCGCCAAACTCCATTGGGTGTTGCATCAATGACT
* *
8308910 GATGACATATACAAAAAGTTCGTAATTAATGATATCCGTAAAAGGT
321 GATGACATCTACAAAAAGTTCGTAATTAATGAAATCCGTAAAAGGT
* *
8308956 TGTATTTATGCATGTTTTGATTTGGACTTTTATTATCTTTTGTTCGTACAGAATACACAAATTCC
1 TGTATTTATGCATGTTTTGCTTTGGACTTTTATTATCTCTTGTTCGTACAGAATACACAAATTCC
*
8309021 AACTGTAACAACTTGCATTATTGTTGGAACTAAAAAAAGATATATAAATTTAAGGAAGAAAAGAT
66 AACTGTAACAACTTGCATTATTGTTGGAACTAAAAAAAGATATATAAATTTAAGGAAGAAAAAAT
* * * *
8309086 GATTATCGACAAATGGCACCACCTTTTCCCAAAGAGGTTTCAATAATAGTGTAACACTCAACTAG
131 GATTATCGACAAATGGCACCACCTCTTACCAAAGAGGTTTCAATAATAGCGTAACGCTCAACTAG
* * * *
8309151 AATCACGTAAACTTTTTTTGCCAACGTAAGAATATCTCACATGCTTCGTGTGCAGAGACTATGAA
196 AATCACGTAAGCTTTTTTTTCCAACGTAAGAATATCTCACGTGCTTCGTGTGCAGAGACTATGGA
* *
8309216 AACAAATAAATGACATCATACT
261 AACAAATAAAGGACATCTTACT
8309238 TGTAAAACCC
Statistics
Matches: 930, Mismatches: 77, Indels: 26
0.90 0.07 0.03
Matches are distributed among these distances:
365 25 0.03
366 159 0.17
367 391 0.42
368 17 0.02
370 79 0.08
371 244 0.26
372 15 0.02
ACGTcount: A:0.36, C:0.17, G:0.16, T:0.31
Consensus pattern (366 bp):
TGTATTTATGCATGTTTTGCTTTGGACTTTTATTATCTCTTGTTCGTACAGAATACACAAATTCC
AACTGTAACAACTTGCATTATTGTTGGAACTAAAAAAAGATATATAAATTTAAGGAAGAAAAAAT
GATTATCGACAAATGGCACCACCTCTTACCAAAGAGGTTTCAATAATAGCGTAACGCTCAACTAG
AATCACGTAAGCTTTTTTTTCCAACGTAAGAATATCTCACGTGCTTCGTGTGCAGAGACTATGGA
AACAAATAAAGGACATCTTACTAGATTCGCCAAACTCCATTGGGTGTTGCATCAATGACTGATGA
CATCTACAAAAAGTTCGTAATTAATGAAATCCGTAAAAGGT
Found at i:8317607 original size:50 final size:50
Alignment explanation
Indices: 8317493--8317735 Score: 398
Period size: 50 Copynumber: 4.8 Consensus size: 50
8317483 GATAATAACA
* * *
8317493 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGCTCTCATATCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGA-CCTCTCATCTCGG
* *
8317544 TGCCCATGCCATGTCCCAGACATGGTCTTAC-GGAGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATG-GGACCTCTCATCTCGG
* *
8317594 TGCCAACGCCATGTCCTAGACATGGTCTTACATGGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
8317644 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
8317694 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
8317736 TTACCCAAAT
Statistics
Matches: 179, Mismatches: 11, Indels: 5
0.92 0.06 0.03
Matches are distributed among these distances:
50 146 0.82
51 33 0.18
ACGTcount: A:0.21, C:0.31, G:0.23, T:0.26
Consensus pattern (50 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
Found at i:8317851 original size:13 final size:13
Alignment explanation
Indices: 8317830--8317860 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
8317820 GCTTAGATCA
*
8317830 TCATCAAATAAAT
1 TCATAAAATAAAT
8317843 TCATAAAATAAAT
1 TCATAAAATAAAT
8317856 TCATA
1 TCATA
8317861 GTTGCTGGAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.55, C:0.13, G:0.00, T:0.32
Consensus pattern (13 bp):
TCATAAAATAAAT
Found at i:8320233 original size:71 final size:71
Alignment explanation
Indices: 8320070--8320345 Score: 359
Period size: 71 Copynumber: 3.9 Consensus size: 71
8320060 CCAAAGCACA
* * * *
8320070 AGATTATTTTCACTCTTTTATTTAAGTTGCTGCCCACGTGCATATACTTTTTTTTAAGTTGATTC
1 AGATTATTTTCACTCTTTTATTTAAGTTGCTACCCACGTACATATAC-TTTCTTCAAGTTGATTC
8320135 TCACATC-
65 TCACA-CG
* *
8320142 AGATTATTTTCACTTTTTTATTTAAGTTGCTACCCACTTACATATACTTTCTTCAAGTTGATTCT
1 AGATTATTTTCACTCTTTTATTTAAGTTGCTACCCACGTACATATACTTTCTTCAAGTTGATTCT
*
8320207 CATACG
66 CACACG
* *
8320213 AAATTATTTTCACTCTTTTATTTAAGTTGCTACCTACGTACATATACTTTCTTCGAA-TTGATTC
1 AGATTATTTTCACTCTTTTATTTAAGTTGCTACCCACGTACATATACTTTCTTC-AAGTTGATTC
8320277 TCACACG
65 TCACACG
* * * *
8320284 AGATTATTTTTACTATTTTATTAAAGTTGCTACCCATGTAC----A-TTTCTTCAAGTTGATTCT
1 AGATTATTTTCACTCTTTTATTTAAGTTGCTACCCACGTACATATACTTTCTTCAAGTTGATTCT
8320344 CA
66 CA
8320346 AACTTTAAAA
Statistics
Matches: 183, Mismatches: 18, Indels: 12
0.86 0.08 0.06
Matches are distributed among these distances:
65 2 0.01
66 17 0.09
67 1 0.01
70 1 0.01
71 117 0.64
72 45 0.25
ACGTcount: A:0.25, C:0.19, G:0.09, T:0.46
Consensus pattern (71 bp):
AGATTATTTTCACTCTTTTATTTAAGTTGCTACCCACGTACATATACTTTCTTCAAGTTGATTCT
CACACG
Found at i:8323393 original size:367 final size:366
Alignment explanation
Indices: 8322710--8323415 Score: 1139
Period size: 367 Copynumber: 1.9 Consensus size: 366
8322700 GATCATTCTA
* *
8322710 TGTATTTATGCATGTGTTGCTTTGGACTTTTACTATCTCATATTCATACAGAATACATAAATTCC
1 TGTATTTATGCATGTGTTGCTTTGGACTTTTACTATCTCATATTCACACAGAATACACAAATTCC
*
8322775 AACTGTAACAACCTGCATTATTGTTGGAACTAAAAAAAGATATATAAATTTAAGAAAGAAAAAAT
66 AACTGTAACAACCTGCACTATTGTTGGAACTAAAAAAAGATATATAAATTTAAGAAAGAAAAAAT
8322840 GATTATCGACAAATGGCACCACCTCTTACCAAAGAGGTTTCAATAATAGCGTAACGCCCAACTAG
131 GATTATCGACAAATGGCACCACCTCTTACCAAAGAGGTTTCAATAATAGCGTAACGCCCAACTAG
* * * *
8322905 AATCACGTAAGCTTTTTTTTTCAAACGTAAGAATATCTCACGTGTTTTGTGTGCAGAGATTATGA
196 AATCACGTAAGC-TTTTTTTTCAAACGTAAGAATATCTCACGTGCTTCGTGTGAAGAGACTATGA
* * **
8322970 GAACAAATAAAGGATATCTTACTAGATTCGCCAAACTCCATTGGGTGTTGCATCAGTGACTGATC
260 GAACAAATAAAGGACATCTTACTAGATTCACCAAACTCCATTCAGTGTTGCATCAGTGACTGATC
8323035 ACACCTACAAAAAGTTTGTAATTAATGAAATCAGCAAAATGT
325 ACACCTACAAAAAGTTTGTAATTAATGAAATCAGCAAAATGT
* * * * *
8323077 TGTATTTATGCATGTTTTGCTTTGGACTTTTATTATCTCTTGTTCGCACAGAATACACAAATTCC
1 TGTATTTATGCATGTGTTGCTTTGGACTTTTACTATCTCATATTCACACAGAATACACAAATTCC
*
8323142 AACTGTAACAACCTGCACTATTGTTGGAACTAAAAAAA-ATATATAAATTTAAGGAAGAAAAAAT
66 AACTGTAACAACCTGCACTATTGTTGGAACTAAAAAAAGATATATAAATTTAAGAAAGAAAAAAT
*
8323206 GATTATCGACAAATTGG-ACCACCTCTTACCAAAGAGGTTTCAATAATAGCGTAACGCTCAACTA
131 GATTATCGACAAA-TGGCACCACCTCTTACCAAAGAGGTTTCAATAATAGCGTAACGCCCAACTA
*
8323270 GAATCACGTAAGC-TTTTTTTCCAACGTAAGAATATCTCACGTGCTTCGTGTGAAGAGACTATGA
195 GAATCACGTAAGCTTTTTTTTCAAACGTAAGAATATCTCACGTGCTTCGTGTGAAGAGACTATGA
* *
8323334 GAACAAATAAAGGACATCTTATTAGAATATTCACCAATCTCCATTCAGTGTTGCATCAGTGACTG
260 GAACAAATAAAGGACATCTTACTAG---ATTCACCAAACTCCATTCAGTGTTGCATCAGTGACTG
* *
8323399 ATGACATCTACAAAAAG
322 ATCACACCTACAAAAAG
8323416 ATCGCCATTA
Statistics
Matches: 312, Mismatches: 23, Indels: 8
0.91 0.07 0.02
Matches are distributed among these distances:
364 69 0.22
366 97 0.31
367 146 0.47
ACGTcount: A:0.36, C:0.18, G:0.15, T:0.31
Consensus pattern (366 bp):
TGTATTTATGCATGTGTTGCTTTGGACTTTTACTATCTCATATTCACACAGAATACACAAATTCC
AACTGTAACAACCTGCACTATTGTTGGAACTAAAAAAAGATATATAAATTTAAGAAAGAAAAAAT
GATTATCGACAAATGGCACCACCTCTTACCAAAGAGGTTTCAATAATAGCGTAACGCCCAACTAG
AATCACGTAAGCTTTTTTTTCAAACGTAAGAATATCTCACGTGCTTCGTGTGAAGAGACTATGAG
AACAAATAAAGGACATCTTACTAGATTCACCAAACTCCATTCAGTGTTGCATCAGTGACTGATCA
CACCTACAAAAAGTTTGTAATTAATGAAATCAGCAAAATGT
Found at i:8325505 original size:366 final size:365
Alignment explanation
Indices: 8324645--8325742 Score: 1558
Period size: 365 Copynumber: 3.0 Consensus size: 365
8324635 GATCATTCCA
* * * *
8324645 TGTATTTATGCATGTGTCGCTTTGGACTTTTACTATCTCTTATTCGTACAGAATACATAAATTTC
1 TGTATTTATGCATGTTTTGCTTTGGACTTTTATTATCTCTTATTCGTACAGAATACACAAATTTC
* * *
8324710 AACTGTAACAACCTGCATTATTTTTAGAACTAAAAAAAGATATATAAATTTAAGAAAG-AAAAAT
66 AACTGTAACAACCTGCATTATTGTTGGAACTAAAAAAAGATATATAAATTTAAGGAAGAAAAAAT
* * * *
8324774 GATTATCGACAAATGACACCACCTTTTACCAAAGAGGTTTTAATAATAGCGTAACGCCCAACTAG
131 GATTATCGACAAATGGCACCACCTATTACCAAAGAGGTTTCAATAATAGCGTAACGCCCAACTAA
* * * *
8324839 AATCACGTAAGCTTTTTTTTCAAACGTAAGAATATCTCACGTGTTTTGTGTGCAGAGATTATGAG
196 AATCACGTAAGCATTTTTTTCCAACGTAAGAATATCTCACGTGCTTTGTGTG-AGAGACTATGAG
* * *
8324904 AACAAATAAAGGACATCTTACTAGATTCGCCAAACTCCATTGGGTGTTGCATCAGTGACTGATCA
260 AACAAATAAAGGACATCTTACTAGATTCACCAAACTCCATTCGGTGTTGCATCAGTGACTGATGA
* * *
8324969 CACCTACAAAAAGTTTGTAATTAATGAAATCAGCAAAAGGT
325 CATCTACAAAAAGTTCGTAATTAATGAAATCCGCAAAAGGT
* * * * *
8325010 TGTATTTATGCATGTTTTGATTTGGACTTTTCTTATCTCTTGTTCGCACAGAATACACAAATTCC
1 TGTATTTATGCATGTTTTGCTTTGGACTTTTATTATCTCTTATTCGTACAGAATACACAAATTTC
*
8325075 AACTGTAACAACCTGCATTATTGTT-GAA-GATAAAAAAGATATATAAATTTAAGGAAGAAAAAA
66 AACTGTAACAACCTGCATTATTGTTGGAACTA-AAAAAAGATATATAAATTTAAGGAAGAAAAAA
* *
8325138 TGATTATCGACAAATGGCACCTTCCTATTACCAAAGAGGTTTCAATAATAGCGTAATGCCCAACT
130 TGATTATCGACAAATGGCACC-ACCTATTACCAAAGAGGTTTCAATAATAGCGTAACGCCCAACT
** * * *
8325203 AAAATCATATAAGCATTTATTTCCAACCTAATAATATCTCACGTGCTTTGTGTGTAGAGACTATG
194 AAAATCACGTAAGCATTTTTTTCCAACGTAAGAATATCTCACGTGCTTTGTGTG-AGAGACTATG
* * *
8325268 ATAACAAATAAAGGACATCTTACTAGATTCACCAAACTTCATT-GGTGTTGCATTAGTGACTGAT
258 AGAACAAATAAAGGACATCTTACTAGATTCACCAAACTCCATTCGGTGTTGCATCAGTGACTGAT
8325332 GACATCTACAAAAAGTTCGTAATTAATGAAATCCGCAAAAGGT
323 GACATCTACAAAAAGTTCGTAATTAATGAAATCCGCAAAAGGT
*
8325375 TGTATTTATGCATGTTTTGCTTTGGACTTTTATTATTTCTTATTCGTACAGAATACACAAATTTC
1 TGTATTTATGCATGTTTTGCTTTGGACTTTTATTATCTCTTATTCGTACAGAATACACAAATTTC
* * * *
8325440 GACTGTAACAACCTGCATTATTGTTGGACCTAAAAAAAGATATATAAACTTGAGGAAGAAAAAAT
66 AACTGTAACAACCTGCATTATTGTTGGAACTAAAAAAAGATATATAAATTTAAGGAAGAAAAAAT
* * * * * * *
8325505 GATTATCGACAAATGGGACCACCTCTTACCAAAGATGTTTCAATGATTGTGTAACGCTCAACTAA
131 GATTATCGACAAATGGCACCACCTATTACCAAAGAGGTTTCAATAATAGCGTAACGCCCAACTAA
* * *
8325570 AATCACGTAAG-GTTTTTTTTCAACGTAAGAATATCTCACGTGCTTCGTGTGAGAGACTATGAGA
196 AATCACGTAAGCATTTTTTTCCAACGTAAGAATATCTCACGTGCTTTGTGTGAGAGACTATGAGA
* * * *
8325634 ACAAATAAATGACATCTTACTAGAATATTCATCAATCTCCATTCAGTGTTGCATCAGTGACTGAT
261 ACAAATAAAGGACATCTTACTAG---ATTCACCAAACTCCATTCGGTGTTGCATCAGTGACTGAT
* * * *
8325699 GACATCTACAAAAAGATCGTCATTAATGACATCCGGAAAAGGT
323 GACATCTACAAAAAGTTCGTAATTAATGAAATCCGCAAAAGGT
8325742 T
1 T
8325743 ACAAATAATG
Statistics
Matches: 649, Mismatches: 75, Indels: 16
0.88 0.10 0.02
Matches are distributed among these distances:
363 35 0.05
364 62 0.10
365 293 0.45
366 199 0.31
367 60 0.09
ACGTcount: A:0.36, C:0.17, G:0.15, T:0.32
Consensus pattern (365 bp):
TGTATTTATGCATGTTTTGCTTTGGACTTTTATTATCTCTTATTCGTACAGAATACACAAATTTC
AACTGTAACAACCTGCATTATTGTTGGAACTAAAAAAAGATATATAAATTTAAGGAAGAAAAAAT
GATTATCGACAAATGGCACCACCTATTACCAAAGAGGTTTCAATAATAGCGTAACGCCCAACTAA
AATCACGTAAGCATTTTTTTCCAACGTAAGAATATCTCACGTGCTTTGTGTGAGAGACTATGAGA
ACAAATAAAGGACATCTTACTAGATTCACCAAACTCCATTCGGTGTTGCATCAGTGACTGATGAC
ATCTACAAAAAGTTCGTAATTAATGAAATCCGCAAAAGGT
Found at i:8326239 original size:4 final size:4
Alignment explanation
Indices: 8326232--8326258 Score: 54
Period size: 4 Copynumber: 6.8 Consensus size: 4
8326222 TCAAGGAGAA
8326232 AAAG AAAG AAAG AAAG AAAG AAAG AAA
1 AAAG AAAG AAAG AAAG AAAG AAAG AAA
8326259 TGTTTATCAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 23 1.00
ACGTcount: A:0.78, C:0.00, G:0.22, T:0.00
Consensus pattern (4 bp):
AAAG
Found at i:8327629 original size:366 final size:363
Alignment explanation
Indices: 8326947--8328044 Score: 1482
Period size: 366 Copynumber: 3.0 Consensus size: 363
8326937 GATCATTCTA
* * * * *
8326947 TGTATTTATGCATGTGTCGCTTTGGACTTTTATTATCTCTTATTCGTAAAGAATACATAAATTCC
1 TGTATTTATGCATGTTTTGCTTTGGACTTTTATTATCTCTTATTCGTACAGAATACACAAATTCT
* *
8327012 AACTGTAACAACCTGCATTATTGTTGGAACTAAAAAAAGATATATAAATTTAAGAAATAAAAAAT
66 AACTGTAACAACCTGCATTATTGTT-GAACTAAAAAAAGATATATAAATTTAAGGAAGAAAAAAT
* * * *
8327077 GATTATTGACAAATGGCACCA--CC-T--CTAAGAGGTTTCAATAATAGCGTAACGCCCAACTAG
130 GATTATCGACAAATGGCACCATTCCTTACCAAAGAGGTTTCAATAATAGCGTAATG-CCAACTAA
* * * *
8327137 AATCACGTAAGCTTTTTTTTTTCAAACGTAATAATATCTCACGTGTTTTGTGTACAGAGATTATG
194 AATCACGTAAGC---TTTTTTTCCAACGTAATAATATCTCACGTGCTTTGTGTGCAGAGACTATG
* *
8327202 AGAACAAATAAAGGACATCTTACTAGATTCGCCAAACTCCATTGGGTGTTGCATCAGTGACTGAT
256 AGAACAAATAAAGGACATCTTACTAGATTCACCAAACTCCATTAGGTGTTGCATCAGTGACTGAT
* *
8327267 CACATCTACAAAAAGTTTGTAATTAATGAAATCAGCAAAAGGT
321 AACATCTACAAAAAGTTCGTAATTAATGAAATCAGCAAAAGGT
*
8327310 TGTATTTATGCATGTTTTGCTTTGGACTTTTATTATCTCTTGTTC-TCACAGAATACACAAATTC
1 TGTATTTATGCATGTTTTGCTTTGGACTTTTATTATCTCTTATTCGT-ACAGAATACACAAATTC
*
8327374 TAACTGTAACAACCTGCATTATTGTTGAA-GATAAAAAAGATATATAAATTTAAGGAAGAAAAAA
65 TAACTGTAACAACCTGCATTATTGTTGAACTA-AAAAAAGATATATAAATTTAAGGAAGAAAAAA
*
8327438 TGATTATCGACAAATGGCA-CATTCCTATTACCAAAGAGGTTTCAATAATAGCATAATGTCCAAC
129 TGATTATCGACAAATGGCACCATTCC--TTACCAAAGAGGTTTCAATAATAGCGTAATG-CCAAC
* * *
8327502 TAAAATCACATAAGCATTTATTTCCAACCTAATAATATCTCACGTGCTTTGTGTGCAGAGACTAT
191 TAAAATCACGTAAGC-TTTTTTTCCAACGTAATAATATCTCACGTGCTTTGTGTGCAGAGACTAT
* * *
8327567 GATAACAAATAAAGGACATCTTATTAGATTCACCAAACTCCATTAGGTGTTGCATTAGTGACTGA
255 GAGAACAAATAAAGGACATCTTACTAGATTCACCAAACTCCATTAGGTGTTGCATCAGTGACTGA
* * *
8327632 TGACATCTACAAAAAGTTCGTAATTAATAAAATCCGCAAAAGGT
320 TAACATCTACAAAAAGTTCGTAATTAATGAAATCAGCAAAAGGT
*
8327676 TGTATTTATGCATGTTTTGCTTTGGACTTTTATTATTTCTTATTCGTACAGAATACACAAATTCT
1 TGTATTTATGCATGTTTTGCTTTGGACTTTTATTATCTCTTATTCGTACAGAATACACAAATTCT
* * * * *
8327741 AACTATAACAACCTGCATTATTATTGGACCTAAAAAAAGATATATAAACTTGAGGAAGAAAAAAT
66 AACTGTAACAACCTGCATTATTGTT-GAACTAAAAAAAGATATATAAATTTAAGGAAGAAAAAAT
* * *
8327806 GATTATCGACAAATGAG-ACCACTT-CTTACCAAAGATGTTTCAATGATTGCGTAATGCTCAACT
130 GATTATCGACAAATG-GCACCA-TTCCTTACCAAAGAGGTTTCAATAATAGCGTAATGC-CAACT
* * **
8327869 AAAATCACGTAAGCTTTTTTTCCAACGTAAGAATATCTCATGTGCTTCATGTGCAGAGACTATGA
192 AAAATCACGTAAGCTTTTTTTCCAACGTAATAATATCTCACGTGCTTTGTGTGCAGAGACTATGA
* * *
8327934 GAACAAATTAAGGACATCTTACTAGAATATTCATCAATCTCCATTCA-GTGTTGCATCAGTGACT
257 GAACAAATAAAGGACATCTTACTAG---ATTCACCAAACTCCATT-AGGTGTTGCATCAGTGACT
* * *
8327998 GATAACATCTACAAAAAGATCGTCATTAATGACAT-ACGCAAAAGGT
318 GATAACATCTACAAAAAGTTCGTAATTAATGAAATCA-GCAAAAGGT
8328044 T
1 T
8328045 ACAAAATATT
Statistics
Matches: 651, Mismatches: 63, Indels: 37
0.87 0.08 0.05
Matches are distributed among these distances:
361 3 0.00
362 52 0.08
363 84 0.13
365 68 0.10
366 273 0.42
367 50 0.08
368 118 0.18
369 3 0.00
ACGTcount: A:0.37, C:0.16, G:0.15, T:0.32
Consensus pattern (363 bp):
TGTATTTATGCATGTTTTGCTTTGGACTTTTATTATCTCTTATTCGTACAGAATACACAAATTCT
AACTGTAACAACCTGCATTATTGTTGAACTAAAAAAAGATATATAAATTTAAGGAAGAAAAAATG
ATTATCGACAAATGGCACCATTCCTTACCAAAGAGGTTTCAATAATAGCGTAATGCCAACTAAAA
TCACGTAAGCTTTTTTTCCAACGTAATAATATCTCACGTGCTTTGTGTGCAGAGACTATGAGAAC
AAATAAAGGACATCTTACTAGATTCACCAAACTCCATTAGGTGTTGCATCAGTGACTGATAACAT
CTACAAAAAGTTCGTAATTAATGAAATCAGCAAAAGGT
Found at i:8329937 original size:365 final size:365
Alignment explanation
Indices: 8329250--8329976 Score: 1203
Period size: 365 Copynumber: 2.0 Consensus size: 365
8329240 GATCATTCCA
*
8329250 TGTATTTATGCATGTGTCGCTTTGGACTTTTACTATCTCTTATTCGTACAGAATACATAAATTTC
1 TGTATTTATGCATGTGTCGCTTTGGACTTTTACTATCTCTTATTCGTACAGAATACACAAATTTC
*
8329315 AACTGTAACAACCTGCATTATTTTTAGAACTAAAAAAAGATATATAAATTTAAGAAAGAAAAATG
66 AACTGTAACAACCTGCATTATTGTTAGAACTAAAAAAAGATATATAAATTTAAGAAAGAAAAATG
* *
8329380 ATTATCGACAAATGACACCACCTTTTACCAAAGAGGTTTTAATAATAGCGTAACGCCCAACTAGA
131 ATTATCGACAAATGACACCACCTCTTACCAAAGAGGTTTCAATAATAGCGTAACGCCCAACTAGA
*
8329445 ATCACGTAAGCTTTTTTTTCAAACGTAAGAATATCTCACGTGTTTTGTGTGCAGAGACTATGAGA
196 ATCACGTAAGCTTTTTTTTCAAACGTAAGAATATCTCACGTGCTTTGTGTGCAGAGACTATGAGA
*
8329510 ACAAATAAAGGACATCTTACTAGATTCACCAAACTTCATTAGGTGTTACATTAGTGACTGATGAC
261 ACAAATAAAGAACATCTTACTAGATTCACCAAACTTCATTAGGTGTTACATTAGTGACTGATGAC
* *
8329575 ATCTACAAAAAGTTTGTAATTAATGAAA-TCAGCAAAAGGT
326 ATATACAAAAAGTTCGTAATTAATGAAATTC-GCAAAAGGT
* * * * *
8329615 TGTATTTATGCATGTTTTGCTTTGGACTTTTATTATCTCTTGTTTGTACAGAATACACAAA-TTC
1 TGTATTTATGCATGTGTCGCTTTGGACTTTTACTATCTCTTATTCGTACAGAATACACAAATTTC
* *
8329679 TAACTGTAACAACCTGCATTATTGTTGGAACTAAAAAAAGATATATAAATTTAAGGAAGAAAAAA
66 -AACTGTAACAACCTGCATTATTGTTAGAACTAAAAAAAGATATATAAATTTAAGAAAG-AAAAA
* *
8329744 TGATTATTGACAAATGGCACCACCTCTT-CGCAAAGAGGTTTCAATAATAGCGTAACGCCCAACT
129 TGATTATCGACAAATGACACCACCTCTTAC-CAAAGAGGTTTCAATAATAGCGTAACGCCCAACT
*
8329808 AGAATCACGTAAG-TTTTTATTTCCAACGTAAGAATATCTCACGTGCTTTGTGTGCAGAGACTAT
193 AGAATCACGTAAGCTTTTT-TTTCAAACGTAAGAATATCTCACGTGCTTTGTGTGCAGAGACTAT
*
8329872 GAGAACAAATAAAGAACATCTTACTAGATTCACCAAACTTCATT-GGTGTTGCATTAGTGACTGA
257 GAGAACAAATAAAGAACATCTTACTAGATTCACCAAACTTCATTAGGTGTTACATTAGTGACTGA
8329936 TGACATATACAAAAAGTTCGTAATTAATGAAATTCGCAAAA
322 TGACATATACAAAAAGTTCGTAATTAATGAAATTCGCAAAA
8329977 TGTTATAAAA
Statistics
Matches: 338, Mismatches: 19, Indels: 10
0.92 0.05 0.03
Matches are distributed among these distances:
364 3 0.01
365 171 0.51
366 164 0.49
ACGTcount: A:0.37, C:0.16, G:0.15, T:0.32
Consensus pattern (365 bp):
TGTATTTATGCATGTGTCGCTTTGGACTTTTACTATCTCTTATTCGTACAGAATACACAAATTTC
AACTGTAACAACCTGCATTATTGTTAGAACTAAAAAAAGATATATAAATTTAAGAAAGAAAAATG
ATTATCGACAAATGACACCACCTCTTACCAAAGAGGTTTCAATAATAGCGTAACGCCCAACTAGA
ATCACGTAAGCTTTTTTTTCAAACGTAAGAATATCTCACGTGCTTTGTGTGCAGAGACTATGAGA
ACAAATAAAGAACATCTTACTAGATTCACCAAACTTCATTAGGTGTTACATTAGTGACTGATGAC
ATATACAAAAAGTTCGTAATTAATGAAATTCGCAAAAGGT
Found at i:8332409 original size:2 final size:2
Alignment explanation
Indices: 8332402--8332435 Score: 61
Period size: 2 Copynumber: 17.5 Consensus size: 2
8332392 TTTAACCATA
8332402 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT -T AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
8332436 AAGGTAATAA
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 30 0.97
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:8332547 original size:2 final size:2
Alignment explanation
Indices: 8332542--8332576 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
8332532 GAAGACTACC
8332542 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
8332577 ATGCATCTTT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:8335492 original size:18 final size:18
Alignment explanation
Indices: 8335469--8335504 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
8335459 TATATTGCAT
8335469 GCAACTATGTATTAGGAA
1 GCAACTATGTATTAGGAA
*
8335487 GCAACTATGTTTTAGGAA
1 GCAACTATGTATTAGGAA
8335505 ACTACTAAGT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.36, C:0.11, G:0.22, T:0.31
Consensus pattern (18 bp):
GCAACTATGTATTAGGAA
Found at i:8335511 original size:18 final size:18
Alignment explanation
Indices: 8335470--8335511 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
8335460 ATATTGCATG
*
8335470 CAACTATGTATTAGGAAG
1 CAACTATGTATTAGGAAA
*
8335488 CAACTATGTTTTAGGAAA
1 CAACTATGTATTAGGAAA
*
8335506 CTACTA
1 CAACTA
8335512 AGTTCAGGCT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.38, C:0.14, G:0.17, T:0.31
Consensus pattern (18 bp):
CAACTATGTATTAGGAAA
Found at i:8336423 original size:47 final size:47
Alignment explanation
Indices: 8336354--8336473 Score: 161
Period size: 47 Copynumber: 2.6 Consensus size: 47
8336344 ATATTCTAAG
* *
8336354 AAAACCTTAAAATGTTTCAAGACAAACAAAGAGACAGTAAATTATTA
1 AAAACCTCAAAATGTTTCAAGACAAACAAAGAGACAATAAATTATTA
* * * *
8336401 AAAACCTCAAAATGTTTCAAGACAGATAAAGAGATAATAAATTATTT
1 AAAACCTCAAAATGTTTCAAGACAAACAAAGAGACAATAAATTATTA
* *
8336448 AGAACCTCAAAATATTTCAAGA-AAAC
1 AAAACCTCAAAATGTTTCAAGACAAAC
8336474 CTTAAAATGT
Statistics
Matches: 63, Mismatches: 10, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
46 2 0.03
47 61 0.97
ACGTcount: A:0.53, C:0.13, G:0.10, T:0.24
Consensus pattern (47 bp):
AAAACCTCAAAATGTTTCAAGACAAACAAAGAGACAATAAATTATTA
Found at i:8336438 original size:115 final size:114
Alignment explanation
Indices: 8336276--8336563 Score: 371
Period size: 115 Copynumber: 2.5 Consensus size: 114
8336266 AACTTTAAAA
* * * *
8336276 TAAATTATTAAAAACCTCATATTATTCCAAAACAACCAAAGAGATAATAAATTATTAAAAATCTC
1 TAAATTATTAAAAACCTCAAAATATTTCAAAACAA-CAAAGAGATAATAAATTATTAAAAACCTC
*
8336341 ACAATA-TTCTAAGAAAACCTTAAAATGTTTCAAGACAAACAAAGAGACAG
65 AAAATATTTC-AAGAAAACCTTAAAATGTTTCAAGACAAACAAAGAGACAG
* * * * *
8336391 TAAATTATTAAAAACCTCAAAATGTTTCAAGACAGATAAAGAGATAATAAATTATTTAGAACCTC
1 TAAATTATTAAAAACCTCAAAATATTTCAAAACA-ACAAAGAGATAATAAATTATTAAAAACCTC
* * * *
8336456 AAAATATTTCAAGAAAACCTTAAAATGTTTCATGACAGACAAAGATATAG
65 AAAATATTTCAAGAAAACCTTAAAATGTTTCAAGACAAACAAAGAGACAG
* * *
8336506 TAAATTATTTAAAACCTCAAAATATTTCAAAACAAAACAAAGAGATAGTAAAATATTA
1 TAAATTATTAAAAACCTCAAAATATTTCAAAAC--AACAAAGAGATAATAAATTATTA
8336564 TTCCAAGACA
Statistics
Matches: 148, Mismatches: 21, Indels: 7
0.84 0.12 0.04
Matches are distributed among these distances:
115 125 0.84
116 22 0.15
117 1 0.01
ACGTcount: A:0.52, C:0.13, G:0.08, T:0.27
Consensus pattern (114 bp):
TAAATTATTAAAAACCTCAAAATATTTCAAAACAACAAAGAGATAATAAATTATTAAAAACCTCA
AAATATTTCAAGAAAACCTTAAAATGTTTCAAGACAAACAAAGAGACAG
Found at i:8336510 original size:68 final size:68
Alignment explanation
Indices: 8336401--8336535 Score: 216
Period size: 68 Copynumber: 2.0 Consensus size: 68
8336391 TAAATTATTA
* *
8336401 AAAACCTCAAAATGTTTCAAGACAGATAAAGAGATAATAAATTATTTAGAACCTCAAAATATTTC
1 AAAACCTCAAAATGTTTCAAGACAGACAAAGAGATAATAAATTATTTAAAACCTCAAAATATTTC
8336466 AAG
66 AAG
* * * *
8336469 AAAACCTTAAAATGTTTCATGACAGACAAAGATATAGTAAATTATTTAAAACCTCAAAATATTTC
1 AAAACCTCAAAATGTTTCAAGACAGACAAAGAGATAATAAATTATTTAAAACCTCAAAATATTTC
8336534 AA
66 AA
8336536 AACAAAACAA
Statistics
Matches: 61, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
68 61 1.00
ACGTcount: A:0.50, C:0.13, G:0.09, T:0.28
Consensus pattern (68 bp):
AAAACCTCAAAATGTTTCAAGACAGACAAAGAGATAATAAATTATTTAAAACCTCAAAATATTTC
AAG
Found at i:8336587 original size:81 final size:80
Alignment explanation
Indices: 8336495--8336643 Score: 226
Period size: 81 Copynumber: 1.9 Consensus size: 80
8336485 TCATGACAGA
* *
8336495 CAAAGATATAGTAAATTATTTAAAACCTCAAAATATTTCAAAACAAAACAAAGAGATAGTAAAAT
1 CAAAGATATAGTAAATTATTAAAAACCTCAAAATATTTCAAAA-AAAACAAAGACATAGTAAAAT
8336560 ATTATTCCAAGACAAC
65 ATTATTCCAAGACAAC
* * * * *
8336576 CAAAGATATAGTAAATTATTAAAAACCTCAAAATGTTTCAAGAGAGACAAAGACATAGTAAATTA
1 CAAAGATATAGTAAATTATTAAAAACCTCAAAATATTTCAAAAAAAACAAAGACATAGTAAAATA
8336641 TTA
66 TTA
8336644 AAAAAAACCC
Statistics
Matches: 61, Mismatches: 7, Indels: 1
0.88 0.10 0.01
Matches are distributed among these distances:
80 21 0.34
81 40 0.66
ACGTcount: A:0.53, C:0.12, G:0.09, T:0.26
Consensus pattern (80 bp):
CAAAGATATAGTAAATTATTAAAAACCTCAAAATATTTCAAAAAAAACAAAGACATAGTAAAATA
TTATTCCAAGACAAC
Found at i:8336661 original size:68 final size:70
Alignment explanation
Indices: 8336588--8336718 Score: 176
Period size: 68 Copynumber: 1.9 Consensus size: 70
8336578 AAGATATAGT
* * *
8336588 AAATTATTAAAAACCTCAAAATGTTTCAAGAGAGAC-AA-AGACATAGTAAATTATTAAAAAAAA
1 AAATTATTAAAAACCTCAAAATGTTTCAAGACAAACAAATAGACAGAGTAAATTATTAAAAAAAA
8336651 CCCTC
66 CCCTC
* * * *
8336656 AAATTATTTAAAATCTTAAAATGTTTCAAGACAAACAAATTAGAGAGAGTAAATTATTAAAAA
1 AAATTATTAAAAACCTCAAAATGTTTCAAGACAAACAAA-TAGACAGAGTAAATTATTAAAAA
8336719 CCTTAAAATG
Statistics
Matches: 53, Mismatches: 7, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
68 31 0.58
69 2 0.04
71 20 0.38
ACGTcount: A:0.53, C:0.11, G:0.09, T:0.27
Consensus pattern (70 bp):
AAATTATTAAAAACCTCAAAATGTTTCAAGACAAACAAATAGACAGAGTAAATTATTAAAAAAAA
CCCTC
Found at i:8336769 original size:53 final size:50
Alignment explanation
Indices: 8336656--8336800 Score: 177
Period size: 50 Copynumber: 2.9 Consensus size: 50
8336646 AAAAACCCTC
* * *
8336656 AAATTATTTAAAATCTTAAAATGTTTCAAGACAAACAAATTAG-AGAGAGT
1 AAATTATTAAAAATCTTAAAATGTTTCAAGACAATCAAA-GAGAAGAGAGT
* *
8336706 AAATTATTAAAAACCTTAAAATGTCTCAAGACAATCAAAGAGACAGAGATAGT
1 AAATTATTAAAAATCTTAAAATGTTTCAAGACAATCAAAGAGA-AGAG--AGT
* *
8336759 AAATTATTAAAAATCTTAGAATGTTTTAAGACAAT-AAAGAGA
1 AAATTATTAAAAATCTTAAAATGTTTCAAGACAATCAAAGAGA
8336801 TAATAAATTA
Statistics
Matches: 82, Mismatches: 9, Indels: 6
0.85 0.09 0.06
Matches are distributed among these distances:
49 2 0.02
50 35 0.43
51 4 0.05
52 7 0.09
53 34 0.41
ACGTcount: A:0.51, C:0.09, G:0.12, T:0.28
Consensus pattern (50 bp):
AAATTATTAAAAATCTTAAAATGTTTCAAGACAATCAAAGAGAAGAGAGT
Found at i:8337363 original size:20 final size:19
Alignment explanation
Indices: 8337338--8337382 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
8337328 TAATAGAATC
*
8337338 ATTTTTAATACTTTTTAAA
1 ATTTTTAATAATTTTTAAA
*
8337357 TATTTTT-ATAATTTTTGAA
1 -ATTTTTAATAATTTTTAAA
8337376 ATTTTTA
1 ATTTTTA
8337383 TTTTTATAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
18 6 0.27
19 10 0.45
20 6 0.27
ACGTcount: A:0.33, C:0.02, G:0.02, T:0.62
Consensus pattern (19 bp):
ATTTTTAATAATTTTTAAA
Found at i:8337468 original size:17 final size:17
Alignment explanation
Indices: 8337427--8337469 Score: 50
Period size: 17 Copynumber: 2.5 Consensus size: 17
8337417 TTTTTATTAA
*
8337427 ATAATTTCTAGTATTTTT
1 ATAATTT-TAGTATATTT
* *
8337445 ATTATTTTATTATATTT
1 ATAATTTTAGTATATTT
8337462 ATAATTTT
1 ATAATTTT
8337470 TTTAAAAACC
Statistics
Matches: 21, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
17 15 0.71
18 6 0.29
ACGTcount: A:0.30, C:0.02, G:0.02, T:0.65
Consensus pattern (17 bp):
ATAATTTTAGTATATTT
Found at i:8342644 original size:23 final size:23
Alignment explanation
Indices: 8342601--8342644 Score: 54
Period size: 23 Copynumber: 1.9 Consensus size: 23
8342591 TTTAGATAGA
* *
8342601 TCAATTTACTTATGAGTTATTAT
1 TCAATATACTGATGAGTTATTAT
8342624 TCAATATACTGAT-AGTGTATT
1 TCAATATACTGATGAGT-TATT
8342645 TTTTTATTTC
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
22 3 0.17
23 15 0.83
ACGTcount: A:0.32, C:0.09, G:0.11, T:0.48
Consensus pattern (23 bp):
TCAATATACTGATGAGTTATTAT
Found at i:8349735 original size:23 final size:23
Alignment explanation
Indices: 8349705--8349750 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
8349695 CAAGCTTGAG
8349705 TACAAAATGTAGACCTAACAAAA
1 TACAAAATGTAGACCTAACAAAA
8349728 TACAAAATGTAGACCTAACAAAA
1 TACAAAATGTAGACCTAACAAAA
8349751 CTTGAACTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.57, C:0.17, G:0.09, T:0.17
Consensus pattern (23 bp):
TACAAAATGTAGACCTAACAAAA
Found at i:8354370 original size:142 final size:145
Alignment explanation
Indices: 8354084--8354371 Score: 433
Period size: 142 Copynumber: 2.0 Consensus size: 145
8354074 TTCACAACAA
8354084 AGCCATAATGGAAAAAAACCCATTCCTTACCATAGGAACATTCTTCATAAAGCTGTAGTTACAGC
1 AGCCATAATGGAAAAAAACCCATTCCTTACCATAGGAACATTCTTCATAAAGCTGTAGTTACAGC
* * * * *
8354149 AAGCTGTTAAAAAGACGGGTGTTTAAAGAAAGTTGTGCCTCCTAGAAGTTGATTCTTATTTGCTC
66 AAACTGTTAAAAAGACAGGTGTTCAAAGAAAGTTGTGCCTCCTACAAGTTGATTCTTATTAGCTC
*
8354214 TGGCTATTGCTTTAT
131 TGGCTACTGCTTTAT
*
8354229 AGCCATAAT-GAAAAAAA-TCATTCCTTACCAT-GGAAACATTCTTCATAAAGCTGTAGTTACAG
1 AGCCATAATGGAAAAAAACCCATTCCTTACCATAGG-AACATTCTTCATAAAGCTGTAGTTACAG
**
8354291 CAAACTGTT-AAAAGACAGGTGTTCAAAGAAAGTTGTTGTTTCC-ACAAGTTGATTCTTATTAGC
65 CAAACTGTTAAAAAGACAGGTGTTCAAAGAAAGTTG-TGCCTCCTACAAGTTGATTCTTATTAGC
*
8354354 TTTGGCTACTGCTTTAT
129 TCTGGCTACTGCTTTAT
8354371 A
1 A
8354372 AAAGCTATGG
Statistics
Matches: 131, Mismatches: 10, Indels: 7
0.89 0.07 0.05
Matches are distributed among these distances:
142 60 0.46
143 54 0.41
144 8 0.06
145 9 0.07
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.32
Consensus pattern (145 bp):
AGCCATAATGGAAAAAAACCCATTCCTTACCATAGGAACATTCTTCATAAAGCTGTAGTTACAGC
AAACTGTTAAAAAGACAGGTGTTCAAAGAAAGTTGTGCCTCCTACAAGTTGATTCTTATTAGCTC
TGGCTACTGCTTTAT
Found at i:8376196 original size:13 final size:13
Alignment explanation
Indices: 8376178--8376203 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
8376168 ATTATATGAA
8376178 ATTAATATTACTT
1 ATTAATATTACTT
8376191 ATTAATATTACTT
1 ATTAATATTACTT
8376204 TTTACTTTTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.08, G:0.00, T:0.54
Consensus pattern (13 bp):
ATTAATATTACTT
Found at i:8378658 original size:15 final size:15
Alignment explanation
Indices: 8378638--8378669 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
8378628 AAACAACAAC
8378638 CACCAACAACAAAAT
1 CACCAACAACAAAAT
8378653 CACCAACAACAAAAT
1 CACCAACAACAAAAT
8378668 CA
1 CA
8378670 TTCTACCGAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.59, C:0.34, G:0.00, T:0.06
Consensus pattern (15 bp):
CACCAACAACAAAAT
Found at i:8379714 original size:7 final size:7
Alignment explanation
Indices: 8379702--8379741 Score: 57
Period size: 7 Copynumber: 6.0 Consensus size: 7
8379692 AATAAATATA
8379702 TATTTTT
1 TATTTTT
8379709 TA-TTTT
1 TATTTTT
8379715 TA-TTTT
1 TATTTTT
8379721 TATTTTT
1 TATTTTT
8379728 TATTTTT
1 TATTTTT
*
8379735 TAATTTT
1 TATTTTT
8379742 AAAATACTTT
Statistics
Matches: 31, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
6 12 0.39
7 19 0.61
ACGTcount: A:0.17, C:0.00, G:0.00, T:0.82
Consensus pattern (7 bp):
TATTTTT
Found at i:8379716 original size:6 final size:6
Alignment explanation
Indices: 8379705--8379734 Score: 51
Period size: 6 Copynumber: 4.8 Consensus size: 6
8379695 AAATATATAT
8379705 TTTTTA TTTTTA TTTTTA TTTTTTA TTTTT
1 TTTTTA TTTTTA TTTTTA -TTTTTA TTTTT
8379735 TAATTTTAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
6 17 0.74
7 6 0.26
ACGTcount: A:0.13, C:0.00, G:0.00, T:0.87
Consensus pattern (6 bp):
TTTTTA
Found at i:8379718 original size:13 final size:13
Alignment explanation
Indices: 8379702--8379742 Score: 57
Period size: 13 Copynumber: 3.2 Consensus size: 13
8379692 AATAAATATA
8379702 TATTTTTTATTTT
1 TATTTTTTATTTT
8379715 TA-TTTTTATTTTT
1 TATTTTTTA-TTTT
*
8379728 TATTTTTTAATTT
1 TATTTTTTATTTT
8379741 TA
1 TA
8379743 AAATACTTTA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
12 6 0.24
13 13 0.52
14 6 0.24
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (13 bp):
TATTTTTTATTTT
Found at i:8388658 original size:21 final size:19
Alignment explanation
Indices: 8388632--8388684 Score: 52
Period size: 20 Copynumber: 2.6 Consensus size: 19
8388622 AATAAATTAG
*
8388632 TTTAAATATAATTTATAATAT
1 TTTAAATAT-ATTT-TAAAAT
*
8388653 TTTAAAAATATTTTAAAAT
1 TTTAAATATATTTTAAAAT
*
8388672 TTTCAAATTTATT
1 TTT-AAATATATT
8388685 ACCAAGTATG
Statistics
Matches: 27, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
19 8 0.30
20 11 0.41
21 8 0.30
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.53
Consensus pattern (19 bp):
TTTAAATATATTTTAAAAT
Found at i:8390160 original size:31 final size:31
Alignment explanation
Indices: 8390125--8390200 Score: 89
Period size: 31 Copynumber: 2.5 Consensus size: 31
8390115 TTACAAAATG
* *
8390125 GTTACTGGACTATTCAAAAATTTGTATTTAA
1 GTTACTGAACTATTCAAAAATTTGTATTGAA
* * *
8390156 GTTACTGAATTATTCAAAAGTTTTTATTGAA
1 GTTACTGAACTATTCAAAAATTTGTATTGAA
* *
8390187 GTCACTAAACTATT
1 GTTACTGAACTATT
8390201 AACTTTTTTT
Statistics
Matches: 37, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
31 37 1.00
ACGTcount: A:0.36, C:0.11, G:0.12, T:0.42
Consensus pattern (31 bp):
GTTACTGAACTATTCAAAAATTTGTATTGAA
Found at i:8390217 original size:17 final size:17
Alignment explanation
Indices: 8390197--8390230 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
8390187 GTCACTAAAC
8390197 TATTAACTTTTTTTTAA
1 TATTAACTTTTTTTTAA
8390214 TATTAACTTTTTTTTAA
1 TATTAACTTTTTTTTAA
8390231 GTCTGGCTAG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.29, C:0.06, G:0.00, T:0.65
Consensus pattern (17 bp):
TATTAACTTTTTTTTAA
Found at i:8397065 original size:303 final size:303
Alignment explanation
Indices: 8396518--8397097 Score: 1160
Period size: 303 Copynumber: 1.9 Consensus size: 303
8396508 CAGCAAAAAC
8396518 ATGTTCCTATCCTTAAAGACATATTACTAAATCAGAAACAAAAACAGCACAGTTTCATTACACTT
1 ATGTTCCTATCCTTAAAGACATATTACTAAATCAGAAACAAAAACAGCACAGTTTCATTACACTT
8396583 CAGAGCAGAGGTATAAGCAGTCCAAAAAGATCTATTATCATGCTACCTTTTATGTCAACTTTTAT
66 CAGAGCAGAGGTATAAGCAGTCCAAAAAGATCTATTATCATGCTACCTTTTATGTCAACTTTTAT
8396648 CTCATTGTTTTCCCTTTAGGGTACAAAAGAACAATAAGATAGGAAAACAGTATATTGCATCCCAG
131 CTCATTGTTTTCCCTTTAGGGTACAAAAGAACAATAAGATAGGAAAACAGTATATTGCATCCCAG
8396713 TCCTCATTACAATATAGAGAAGCAATTTCACAGCAAGAAAAATATTTTGACCAGTTGTTCGTTTT
196 TCCTCATTACAATATAGAGAAGCAATTTCACAGCAAGAAAAATATTTTGACCAGTTGTTCGTTTT
8396778 CAATACCTATATGCACAGTTTCATGTACAGTTTCAATACCTAT
261 CAATACCTATATGCACAGTTTCATGTACAGTTTCAATACCTAT
8396821 ATGTTCCTATCCTTAAAGACATATTACTAAATCAGAAACAAAAACAGCACAGTTTCATTACACTT
1 ATGTTCCTATCCTTAAAGACATATTACTAAATCAGAAACAAAAACAGCACAGTTTCATTACACTT
8396886 CAGAGCAGAGGTATAAGCAGTCCAAAAAGATCTATTATCATGCTACCTTTTATGTCAACTTTTAT
66 CAGAGCAGAGGTATAAGCAGTCCAAAAAGATCTATTATCATGCTACCTTTTATGTCAACTTTTAT
8396951 CTCATTGTTTTCCCTTTAGGGTACAAAAGAACAATAAGATAGGAAAACAGTATATTGCATCCCAG
131 CTCATTGTTTTCCCTTTAGGGTACAAAAGAACAATAAGATAGGAAAACAGTATATTGCATCCCAG
8397016 TCCTCATTACAATATAGAGAAGCAATTTCACAGCAAGAAAAATATTTTGACCAGTTGTTCGTTTT
196 TCCTCATTACAATATAGAGAAGCAATTTCACAGCAAGAAAAATATTTTGACCAGTTGTTCGTTTT
8397081 CAATACCTATATGCACA
261 CAATACCTATATGCACA
8397098 CTTCAATAAT
Statistics
Matches: 277, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
303 277 1.00
ACGTcount: A:0.37, C:0.19, G:0.13, T:0.31
Consensus pattern (303 bp):
ATGTTCCTATCCTTAAAGACATATTACTAAATCAGAAACAAAAACAGCACAGTTTCATTACACTT
CAGAGCAGAGGTATAAGCAGTCCAAAAAGATCTATTATCATGCTACCTTTTATGTCAACTTTTAT
CTCATTGTTTTCCCTTTAGGGTACAAAAGAACAATAAGATAGGAAAACAGTATATTGCATCCCAG
TCCTCATTACAATATAGAGAAGCAATTTCACAGCAAGAAAAATATTTTGACCAGTTGTTCGTTTT
CAATACCTATATGCACAGTTTCATGTACAGTTTCAATACCTAT
Found at i:8401423 original size:27 final size:26
Alignment explanation
Indices: 8401385--8401443 Score: 75
Period size: 27 Copynumber: 2.2 Consensus size: 26
8401375 CATGAAATTC
* *
8401385 CAAAACCTAAAAAAATTTGAGAACCT
1 CAAAACCTAAAAAAACTTGAGAAACT
8401411 -AAAACCTCAAAAAAAACTTGAGAAACT
1 CAAAACCT--AAAAAAACTTGAGAAACT
8401438 CAAAAC
1 CAAAAC
8401444 TTGAGAAACT
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
25 7 0.25
27 16 0.57
28 5 0.18
ACGTcount: A:0.58, C:0.20, G:0.07, T:0.15
Consensus pattern (26 bp):
CAAAACCTAAAAAAACTTGAGAAACT
Found at i:8401444 original size:16 final size:16
Alignment explanation
Indices: 8401423--8401458 Score: 72
Period size: 16 Copynumber: 2.2 Consensus size: 16
8401413 AACCTCAAAA
8401423 AAAACTTGAGAAACTC
1 AAAACTTGAGAAACTC
8401439 AAAACTTGAGAAACTC
1 AAAACTTGAGAAACTC
8401455 AAAA
1 AAAA
8401459 ATCTAAGTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.56, C:0.17, G:0.11, T:0.17
Consensus pattern (16 bp):
AAAACTTGAGAAACTC
Found at i:8410982 original size:20 final size:20
Alignment explanation
Indices: 8410946--8410983 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
8410936 TAGATTTTAA
*
8410946 AATATTTATATATTTTATTT
1 AATATTTATATACTTTATTT
8410966 AATATTTA-ATAACTTTAT
1 AATATTTATAT-ACTTTAT
8410984 ATAGTTTTTA
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
19 2 0.12
20 14 0.88
ACGTcount: A:0.39, C:0.03, G:0.00, T:0.58
Consensus pattern (20 bp):
AATATTTATATACTTTATTT
Found at i:8413412 original size:11 final size:11
Alignment explanation
Indices: 8413396--8413421 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
8413386 ATTTTTTTAA
8413396 TTTTAAAATAC
1 TTTTAAAATAC
8413407 TTTTAAAATAC
1 TTTTAAAATAC
8413418 TTTT
1 TTTT
8413422 TTTAAATTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.38, C:0.08, G:0.00, T:0.54
Consensus pattern (11 bp):
TTTTAAAATAC
Found at i:8413488 original size:38 final size:38
Alignment explanation
Indices: 8413381--8413508 Score: 163
Period size: 38 Copynumber: 3.3 Consensus size: 38
8413371 ATAATAAATA
* *
8413381 TTTTT-ATTTTTTTAATTTTAAAATACTTTTAAAATACTT
1 TTTTTAATTTTTTAAATTTT-AAATATTTTTAAAATAC-T
*
8413420 TTTTTAAATTTTTTAAATTTTAAATTTTTTTAAAAATAC-
1 TTTTT-AATTTTTTAAATTTTAAATATTTTT-AAAATACT
8413459 TTTTTAATTTTTT-AATTTTAAAATATTTTTAAAATACT
1 TTTTTAATTTTTTAAATTTT-AAATATTTTTAAAATACT
8413497 TTTTTAATTTTT
1 TTTTTAATTTTT
8413509 GTTTTAATTT
Statistics
Matches: 80, Mismatches: 4, Indels: 11
0.84 0.04 0.12
Matches are distributed among these distances:
37 13 0.16
38 29 0.36
39 10 0.12
40 8 0.10
41 20 0.25
ACGTcount: A:0.34, C:0.03, G:0.00, T:0.62
Consensus pattern (38 bp):
TTTTTAATTTTTTAAATTTTAAATATTTTTAAAATACT
Found at i:8418958 original size:10 final size:11
Alignment explanation
Indices: 8418941--8418966 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
8418931 CTTTAAATGC
8418941 GAAAAAAAAAA
1 GAAAAAAAAAA
8418952 GAAAAAAAAAA
1 GAAAAAAAAAA
8418963 GAAA
1 GAAA
8418967 GGAAGAAAGA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.88, C:0.00, G:0.12, T:0.00
Consensus pattern (11 bp):
GAAAAAAAAAA
Found at i:8419982 original size:29 final size:28
Alignment explanation
Indices: 8419938--8419993 Score: 85
Period size: 29 Copynumber: 2.0 Consensus size: 28
8419928 CAATTAAGAC
* *
8419938 ATAAAAAATGTAAAATATTTTTATATTA
1 ATAAAAAAGGTAAAATATATTTATATTA
8419966 ATAAAAAAGGGTAAAATATATTTATATT
1 ATAAAAAA-GGTAAAATATATTTATATT
8419994 TTATATTTAT
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
28 8 0.32
29 17 0.68
ACGTcount: A:0.54, C:0.00, G:0.07, T:0.39
Consensus pattern (28 bp):
ATAAAAAAGGTAAAATATATTTATATTA
Found at i:8437219 original size:303 final size:303
Alignment explanation
Indices: 8436672--8437281 Score: 1202
Period size: 303 Copynumber: 2.0 Consensus size: 303
8436662 ACTTTATCAA
8436672 TCCAATGGTTATTTAATTTTACTTGGTAAACATTTCTTTTTGAAATGTCTTCTCACAAGCATAAC
1 TCCAATGGTTATTTAATTTTACTTGGTAAACATTTCTTTTTGAAATGTCTTCTCACAAGCATAAC
8436737 ATGTTAAAAGATTTTGTAAGCATAACATTTAATGCTATTGGAGTAGTCAGACAACTTAGATAAAA
66 ATGTTAAAAGATTTTGTAAGCATAACATTTAATGCTATTGGAGTAGTCAGACAACTTAGATAAAA
8436802 ATAAAAATAATAAACAATTTTCATATGATATTTTTTGTATTGGTCTAATCACATATACATATATG
131 ATAAAAATAATAAACAATTTTCATATGATATTTTTTGTATTGGTCTAATCACATATACATATATG
*
8436867 GCCAGGTCAGACATTAATGTATTGTAAGCAATTCATCCTGGATCCAATGTGCCCTGGATGTAAAG
196 CCCAGGTCAGACATTAATGTATTGTAAGCAATTCATCCTGGATCCAATGTGCCCTGGATGTAAAG
8436932 GCAACTATGAATCATGGAGTAAACAAGAGCGAGGAATTACATT
261 GCAACTATGAATCATGGAGTAAACAAGAGCGAGGAATTACATT
*
8436975 TCCAATGGTTATTTAATTTTACTTGGTAAACATTTCTTTTTGAAATGTTTTCTCACAAGCATAAC
1 TCCAATGGTTATTTAATTTTACTTGGTAAACATTTCTTTTTGAAATGTCTTCTCACAAGCATAAC
8437040 ATGTTAAAAGATTTTGTAAGCATAACATTTAATGCTATTGGAGTAGTCAGACAACTTAGATAAAA
66 ATGTTAAAAGATTTTGTAAGCATAACATTTAATGCTATTGGAGTAGTCAGACAACTTAGATAAAA
8437105 ATAAAAATAATAAACAATTTTCATATGATATTTTTTGTATTGGTCTAATCACATATACATATATG
131 ATAAAAATAATAAACAATTTTCATATGATATTTTTTGTATTGGTCTAATCACATATACATATATG
8437170 CCCAGGTCAGACATTAATGTATTGTAAGCAATTCATCCTGGATCCAATGTGCCCTGGATGTAAAG
196 CCCAGGTCAGACATTAATGTATTGTAAGCAATTCATCCTGGATCCAATGTGCCCTGGATGTAAAG
8437235 GCAACTATGAATCATGGAGTAAACAAGAGCGAGGAATTACATT
261 GCAACTATGAATCATGGAGTAAACAAGAGCGAGGAATTACATT
8437278 TCCA
1 TCCA
8437282 GGCAAAATAT
Statistics
Matches: 305, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
303 305 1.00
ACGTcount: A:0.36, C:0.14, G:0.16, T:0.34
Consensus pattern (303 bp):
TCCAATGGTTATTTAATTTTACTTGGTAAACATTTCTTTTTGAAATGTCTTCTCACAAGCATAAC
ATGTTAAAAGATTTTGTAAGCATAACATTTAATGCTATTGGAGTAGTCAGACAACTTAGATAAAA
ATAAAAATAATAAACAATTTTCATATGATATTTTTTGTATTGGTCTAATCACATATACATATATG
CCCAGGTCAGACATTAATGTATTGTAAGCAATTCATCCTGGATCCAATGTGCCCTGGATGTAAAG
GCAACTATGAATCATGGAGTAAACAAGAGCGAGGAATTACATT
Found at i:8440331 original size:16 final size:17
Alignment explanation
Indices: 8440312--8440344 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
8440302 TTTTTTTTAA
8440312 TTGTAT-TTTTAAATTG
1 TTGTATATTTTAAATTG
*
8440328 TTGTATATTTTAGATTG
1 TTGTATATTTTAAATTG
8440345 GTTTAGAAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 6 0.40
17 9 0.60
ACGTcount: A:0.24, C:0.00, G:0.15, T:0.61
Consensus pattern (17 bp):
TTGTATATTTTAAATTG
Found at i:8440661 original size:30 final size:30
Alignment explanation
Indices: 8440621--8440677 Score: 89
Period size: 29 Copynumber: 1.9 Consensus size: 30
8440611 TTAATGGTTT
8440621 TTTATGAAAATTAAATCAAATCAAAATTTAA
1 TTTATGAAAATTAAAT-AAATCAAAATTTAA
*
8440652 TTTAT-AAAATTACATAAATCAAAATT
1 TTTATGAAAATTAAATAAATCAAAATT
8440678 CATACATCAT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
29 11 0.44
30 9 0.36
31 5 0.20
ACGTcount: A:0.54, C:0.07, G:0.02, T:0.37
Consensus pattern (30 bp):
TTTATGAAAATTAAATAAATCAAAATTTAA
Found at i:8441714 original size:31 final size:31
Alignment explanation
Indices: 8441668--8441752 Score: 93
Period size: 31 Copynumber: 2.8 Consensus size: 31
8441658 TTTAAATGTC
*
8441668 TATAATTGAAA-TAAAATTAAAATTTTATGTA
1 TATAATT-AAACTAAAATTAAAATTTTATATA
* * * *
8441699 TATATTTAAACTAAAATCAAAGTATTATATA
1 TATAATTAAACTAAAATTAAAATTTTATATA
*
8441730 TATAATTACAC-AAAATTAAAATT
1 TATAATTAAACTAAAATTAAAATT
8441753 CATATATCAA
Statistics
Matches: 43, Mismatches: 10, Indels: 3
0.77 0.18 0.05
Matches are distributed among these distances:
30 12 0.28
31 31 0.72
ACGTcount: A:0.53, C:0.05, G:0.04, T:0.39
Consensus pattern (31 bp):
TATAATTAAACTAAAATTAAAATTTTATATA
Found at i:8442662 original size:46 final size:49
Alignment explanation
Indices: 8442591--8442682 Score: 120
Period size: 46 Copynumber: 1.9 Consensus size: 49
8442581 ATTTTTTAAA
* *
8442591 ATTTAAAAATTATAAAAACTCATTTTTTAAATT-TAAAATCATTAAAATT
1 ATTTAAAAATTATAAAAACTCA-TTTTTAAATTAAAAAATAATTAAAATT
*
8442640 ATTTAAAAA-TAT-AAAA-TTATTTTTAAATTAAAAAATAATTAAA
1 ATTTAAAAATTATAAAAACTCATTTTTAAATTAAAAAATAATTAAA
8442683 TACTAACATA
Statistics
Matches: 39, Mismatches: 3, Indels: 5
0.83 0.06 0.11
Matches are distributed among these distances:
45 10 0.26
46 13 0.33
47 4 0.10
48 3 0.08
49 9 0.23
ACGTcount: A:0.55, C:0.03, G:0.00, T:0.41
Consensus pattern (49 bp):
ATTTAAAAATTATAAAAACTCATTTTTAAATTAAAAAATAATTAAAATT
Found at i:8442667 original size:18 final size:17
Alignment explanation
Indices: 8442621--8442672 Score: 59
Period size: 18 Copynumber: 2.9 Consensus size: 17
8442611 CATTTTTTAA
8442621 ATTTAAAATCATTAAAATT
1 ATTTAAAA--ATTAAAATT
8442640 ATTTAAAAATATAAAATT
1 ATTTAAAAAT-TAAAATT
**
8442658 ATTTTTAAATTAAAA
1 ATTTAAAAATTAAAA
8442673 AATAATTAAA
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
17 7 0.23
18 15 0.50
19 8 0.27
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.42
Consensus pattern (17 bp):
ATTTAAAAATTAAAATT
Found at i:8443645 original size:3 final size:3
Alignment explanation
Indices: 8443637--8443699 Score: 76
Period size: 3 Copynumber: 20.7 Consensus size: 3
8443627 GTTTATTTAA
*
8443637 ATT ATT ATT ACTGT ATT ATT ATT AGT -TT ATT ATT ATT A-T ATT ATAT
1 ATT ATT ATT A-T-T ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT-T
8443683 ATT ATT ATT ATT ATT AT
1 ATT ATT ATT ATT ATT AT
8443700 ACTTACTTAT
Statistics
Matches: 53, Mismatches: 2, Indels: 10
0.82 0.03 0.15
Matches are distributed among these distances:
2 3 0.06
3 43 0.81
4 5 0.09
5 2 0.04
ACGTcount: A:0.33, C:0.02, G:0.03, T:0.62
Consensus pattern (3 bp):
ATT
Found at i:8443654 original size:14 final size:13
Alignment explanation
Indices: 8443637--8443699 Score: 69
Period size: 14 Copynumber: 4.8 Consensus size: 13
8443627 GTTTATTTAA
8443637 ATTATTATTACTGT
1 ATTATTATTA-TGT
8443651 ATTATTATTA-GT
1 ATTATTATTATGT
*
8443663 -TTATTATTATTAT
1 ATTATTATTA-TGT
8443676 ATTATATATTAT-T
1 ATTAT-TATTATGT
8443689 ATTATTATTAT
1 ATTATTATTAT
8443700 ACTTACTTAT
Statistics
Matches: 44, Mismatches: 1, Indels: 10
0.80 0.02 0.18
Matches are distributed among these distances:
11 9 0.20
12 8 0.18
13 7 0.16
14 15 0.34
15 5 0.11
ACGTcount: A:0.33, C:0.02, G:0.03, T:0.62
Consensus pattern (13 bp):
ATTATTATTATGT
Found at i:8447527 original size:2 final size:2
Alignment explanation
Indices: 8447522--8447565 Score: 88
Period size: 2 Copynumber: 22.0 Consensus size: 2
8447512 TATATGCAAG
8447522 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
8447564 AT
1 AT
8447566 NNNNNNNNNN
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 42 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:8449084 original size:3 final size:3
Alignment explanation
Indices: 8449076--8449100 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
8449066 AAACCAGTTG
8449076 ATT ATT ATT ATT ATT ATT ATT ATT A
1 ATT ATT ATT ATT ATT ATT ATT ATT A
8449101 AGTTAACTAG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (3 bp):
ATT
Found at i:8458676 original size:23 final size:22
Alignment explanation
Indices: 8458642--8458694 Score: 61
Period size: 22 Copynumber: 2.4 Consensus size: 22
8458632 AAAAAATAGA
* *
8458642 TAAAATTATTATTTAACCAACTT
1 TAAAATTTTTA-TTAACCAAATT
* *
8458665 TAATATTTTTATTAATCAAATT
1 TAAAATTTTTATTAACCAAATT
8458687 TAAAATTT
1 TAAAATTT
8458695 AAACTTTAAC
Statistics
Matches: 25, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
22 16 0.64
23 9 0.36
ACGTcount: A:0.43, C:0.08, G:0.00, T:0.49
Consensus pattern (22 bp):
TAAAATTTTTATTAACCAAATT
Found at i:8459075 original size:16 final size:16
Alignment explanation
Indices: 8459049--8459089 Score: 64
Period size: 16 Copynumber: 2.5 Consensus size: 16
8459039 TTATTTAATC
8459049 TAATCATTTGATATATT
1 TAAT-ATTTGATATATT
8459066 TAATATTTGATATATT
1 TAATATTTGATATATT
*
8459082 AAATATTT
1 TAATATTT
8459090 TTCAAAAAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
16 19 0.83
17 4 0.17
ACGTcount: A:0.39, C:0.02, G:0.05, T:0.54
Consensus pattern (16 bp):
TAATATTTGATATATT
Found at i:8459450 original size:15 final size:15
Alignment explanation
Indices: 8459430--8459460 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
8459420 CCCCCCCCCC
8459430 AAAAAAAAAAAAGAA
1 AAAAAAAAAAAAGAA
*
8459445 AAAAAAAGAAAAGAA
1 AAAAAAAAAAAAGAA
8459460 A
1 A
8459461 GAGGGATAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.90, C:0.00, G:0.10, T:0.00
Consensus pattern (15 bp):
AAAAAAAAAAAAGAA
Found at i:8463548 original size:58 final size:58
Alignment explanation
Indices: 8463476--8463701 Score: 379
Period size: 58 Copynumber: 4.0 Consensus size: 58
8463466 TTATGCATAA
*
8463476 CTTCTCTTAGAACTTTACTTATGGGTAATATGATTGTAACTCAAGTTAGAATGTTATC
1 CTTCTCTTAGAACTTTACTTATGGGTAATATGATTGTAACTCAAGTTGGAATGTTATC
*
8463534 CTTCTCTTACAACTTTACTTATGGGTAATATGATTGTAACTCAAGTTGGAATGTTATC
1 CTTCTCTTAGAACTTTACTTATGGGTAATATGATTGTAACTCAAGTTGGAATGTTATC
*
8463592 CTTCTCTTAGAACTTTACTTATGGGTAATATGATTGTAACTCAAGTTGGAAAGTTAT-
1 CTTCTCTTAGAACTTTACTTATGGGTAATATGATTGTAACTCAAGTTGGAATGTTATC
* *
8463649 C--CTCTTAGAACTTTATTTATGGGTAATAAGA-TGTAACTCAAGTTGGAATGTTA
1 CTTCTCTTAGAACTTTACTTATGGGTAATATGATTGTAACTCAAGTTGGAATGTTA
8463702 CCAGCCAGTG
Statistics
Matches: 161, Mismatches: 7, Indels: 4
0.94 0.04 0.02
Matches are distributed among these distances:
54 21 0.13
55 28 0.17
57 1 0.01
58 111 0.69
ACGTcount: A:0.30, C:0.13, G:0.17, T:0.40
Consensus pattern (58 bp):
CTTCTCTTAGAACTTTACTTATGGGTAATATGATTGTAACTCAAGTTGGAATGTTATC
Found at i:8470919 original size:10 final size:10
Alignment explanation
Indices: 8470896--8470930 Score: 63
Period size: 10 Copynumber: 3.6 Consensus size: 10
8470886 GTATGTTTAC
8470896 ATATATGT-T
1 ATATATGTGT
8470905 ATATATGTGT
1 ATATATGTGT
8470915 ATATATGTGT
1 ATATATGTGT
8470925 ATATAT
1 ATATAT
8470931 ATATGGACAT
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
9 8 0.32
10 17 0.68
ACGTcount: A:0.34, C:0.00, G:0.14, T:0.51
Consensus pattern (10 bp):
ATATATGTGT
Found at i:8498495 original size:20 final size:20
Alignment explanation
Indices: 8498472--8498509 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
8498462 AATTTTTCAA
8498472 AAAT-TTTAACAATTTTAACT
1 AAATCTTTAA-AATTTTAACT
*
8498492 AAATCTTTTAAATTTTAA
1 AAATCTTTAAAATTTTAA
8498510 AAATTTCTCA
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
20 12 0.75
21 4 0.25
ACGTcount: A:0.45, C:0.08, G:0.00, T:0.47
Consensus pattern (20 bp):
AAATCTTTAAAATTTTAACT
Found at i:8500124 original size:13 final size:14
Alignment explanation
Indices: 8500105--8500141 Score: 51
Period size: 13 Copynumber: 2.8 Consensus size: 14
8500095 TTCGCGTCTA
8500105 AGTTTAATTTTAAT
1 AGTTTAATTTTAAT
8500119 -GTTTAA-TTTAAT
1 AGTTTAATTTTAAT
*
8500131 ATTTTAATTTT
1 AGTTTAATTTT
8500142 TTTTAAAACC
Statistics
Matches: 20, Mismatches: 1, Indels: 4
0.80 0.04 0.16
Matches are distributed among these distances:
12 6 0.30
13 11 0.55
14 3 0.15
ACGTcount: A:0.32, C:0.00, G:0.05, T:0.62
Consensus pattern (14 bp):
AGTTTAATTTTAAT
Found at i:8501202 original size:26 final size:26
Alignment explanation
Indices: 8501173--8501257 Score: 77
Period size: 26 Copynumber: 3.3 Consensus size: 26
8501163 TTTATGAAAG
8501173 TATTATTCAACAATTGAAGTTAAATT
1 TATTATTCAACAATTGAAGTTAAATT
** **
8501199 TATTATT--A-AATATGTATTTATAAAAG
1 TATTATTCAACAAT-TG-AAGT-TAAATT
8501225 TATTATTCAACAATTGAAGTTAAATT
1 TATTATTCAACAATTGAAGTTAAATT
*
8501251 TACTATT
1 TATTATT
8501258 TTGTTTTTAT
Statistics
Matches: 44, Mismatches: 9, Indels: 12
0.68 0.14 0.18
Matches are distributed among these distances:
23 3 0.07
24 3 0.07
25 2 0.05
26 28 0.64
27 2 0.05
28 3 0.07
29 3 0.07
ACGTcount: A:0.42, C:0.06, G:0.07, T:0.45
Consensus pattern (26 bp):
TATTATTCAACAATTGAAGTTAAATT
Found at i:8501269 original size:52 final size:52
Alignment explanation
Indices: 8501150--8501257 Score: 198
Period size: 52 Copynumber: 2.1 Consensus size: 52
8501140 AAAAGAAAAA
* *
8501150 TATTAAATATGTATTTATGAAAGTATTATTCAACAATTGAAGTTAAATTTAT
1 TATTAAATATGTATTTATAAAAGTATTATTCAACAATTGAAGTTAAATTTAC
8501202 TATTAAATATGTATTTATAAAAGTATTATTCAACAATTGAAGTTAAATTTAC
1 TATTAAATATGTATTTATAAAAGTATTATTCAACAATTGAAGTTAAATTTAC
8501254 TATT
1 TATT
8501258 TTGTTTTTAT
Statistics
Matches: 54, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
52 54 1.00
ACGTcount: A:0.43, C:0.05, G:0.08, T:0.44
Consensus pattern (52 bp):
TATTAAATATGTATTTATAAAAGTATTATTCAACAATTGAAGTTAAATTTAC
Found at i:8504235 original size:109 final size:109
Alignment explanation
Indices: 8504038--8504342 Score: 445
Period size: 109 Copynumber: 2.8 Consensus size: 109
8504028 AATTCAAAAA
* * * *
8504038 GATATTTGGCAATTTGGTTAAACGAG--AAATCGGAACCCAACACATTAGGGCACG-TTCCTCGA
1 GATATTTGGCAATTTGGTTGAACGAGAAAAATCGAAACCCAGCACATTAGGGCACGTTTTCTCGA
* * *
8504100 ATTTCCAAATGCAAAACACTGTCTTATTTTGAAATTTTTGGAAG
66 ATTTCCAAATGCAAAACATTGCCTTATTTTGAAATTTTTGAAAG
* * *
8504144 GATATTTAGCCATTTGGTTGAACGAGAAAAATCGAAACCCAGCACATTAGGGCATGTTTTCTCGA
1 GATATTTGGCAATTTGGTTGAACGAGAAAAATCGAAACCCAGCACATTAGGGCACGTTTTCTCGA
* *
8504209 ATTCCCAAATGCAAAACATTGCCTTATTTTGGAATTTTTGAAAG
66 ATTTCCAAATGCAAAACATTGCCTTATTTTGAAATTTTTGAAAG
* *
8504253 GATATTTGGCTATTTGGTTGAACGAGAAAAATCGAGACCCAGCACATTAGGGCACGTTTTCTCGA
1 GATATTTGGCAATTTGGTTGAACGAGAAAAATCGAAACCCAGCACATTAGGGCACGTTTTCTCGA
* *
8504318 ATTTCCAAACGCAAAATATTGCCTT
66 ATTTCCAAATGCAAAACATTGCCTT
8504343 TATTATTTTA
Statistics
Matches: 177, Mismatches: 19, Indels: 3
0.89 0.10 0.02
Matches are distributed among these distances:
106 23 0.13
108 25 0.14
109 129 0.73
ACGTcount: A:0.32, C:0.18, G:0.19, T:0.30
Consensus pattern (109 bp):
GATATTTGGCAATTTGGTTGAACGAGAAAAATCGAAACCCAGCACATTAGGGCACGTTTTCTCGA
ATTTCCAAATGCAAAACATTGCCTTATTTTGAAATTTTTGAAAG
Found at i:8504781 original size:16 final size:15
Alignment explanation
Indices: 8504756--8504789 Score: 50
Period size: 16 Copynumber: 2.2 Consensus size: 15
8504746 ATAAAGAAAT
*
8504756 AAACAAAAAAATATA
1 AAACAAAAAAACATA
8504771 AAACTAAAAAAACATA
1 AAAC-AAAAAAACATA
8504787 AAA
1 AAA
8504790 GATATATATA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 4 0.24
16 13 0.76
ACGTcount: A:0.79, C:0.09, G:0.00, T:0.12
Consensus pattern (15 bp):
AAACAAAAAAACATA
Found at i:8505011 original size:2 final size:2
Alignment explanation
Indices: 8505004--8505057 Score: 108
Period size: 2 Copynumber: 27.0 Consensus size: 2
8504994 GGAGCTAGAC
8505004 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
8505046 AT AT AT AT AT AT
1 AT AT AT AT AT AT
8505058 TATTCATCAC
Statistics
Matches: 52, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 52 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:8509738 original size:16 final size:17
Alignment explanation
Indices: 8509717--8509749 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
8509707 AATGTCTAGT
8509717 AAATT-ATTAATTGAGA
1 AAATTAATTAATTGAGA
8509733 AAATTAGATTAATTGAG
1 AAATTA-ATTAATTGAG
8509750 GGGTTAATTG
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 5 0.33
18 10 0.67
ACGTcount: A:0.48, C:0.00, G:0.15, T:0.36
Consensus pattern (17 bp):
AAATTAATTAATTGAGA
Found at i:8511521 original size:16 final size:16
Alignment explanation
Indices: 8511500--8511544 Score: 54
Period size: 19 Copynumber: 2.6 Consensus size: 16
8511490 ACAGAACAAG
8511500 ATCAAAAGGGCTACGA
1 ATCAAAAGGGCTACGA
*
8511516 ATCAAAAGGGAGGCTGCGA
1 ATCAAAA--G-GGCTACGA
8511535 ATCAAAAGGG
1 ATCAAAAGGG
8511545 AAAACAACCA
Statistics
Matches: 25, Mismatches: 1, Indels: 6
0.78 0.03 0.19
Matches are distributed among these distances:
16 9 0.36
17 1 0.04
18 1 0.04
19 14 0.56
ACGTcount: A:0.42, C:0.16, G:0.31, T:0.11
Consensus pattern (16 bp):
ATCAAAAGGGCTACGA
Found at i:8511535 original size:19 final size:19
Alignment explanation
Indices: 8511508--8511545 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
8511498 AGATCAAAAG
8511508 GGCTACGAATCAAAAGGGA
1 GGCTACGAATCAAAAGGGA
*
8511527 GGCTGCGAATCAAAAGGGA
1 GGCTACGAATCAAAAGGGA
8511546 AAACAACCAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.39, C:0.16, G:0.34, T:0.11
Consensus pattern (19 bp):
GGCTACGAATCAAAAGGGA
Found at i:8518780 original size:35 final size:35
Alignment explanation
Indices: 8518741--8518812 Score: 144
Period size: 35 Copynumber: 2.1 Consensus size: 35
8518731 CATCTGATAA
8518741 AAATCTTATGGCTTGATAGTCCATGTTTTAAAATT
1 AAATCTTATGGCTTGATAGTCCATGTTTTAAAATT
8518776 AAATCTTATGGCTTGATAGTCCATGTTTTAAAATT
1 AAATCTTATGGCTTGATAGTCCATGTTTTAAAATT
8518811 AA
1 AA
8518813 CTCTGTAGGA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 37 1.00
ACGTcount: A:0.33, C:0.11, G:0.14, T:0.42
Consensus pattern (35 bp):
AAATCTTATGGCTTGATAGTCCATGTTTTAAAATT
Found at i:8519086 original size:9 final size:9
Alignment explanation
Indices: 8519072--8519102 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
8519062 GTTAAACGAA
8519072 TCGAGTTAT
1 TCGAGTTAT
*
8519081 TCGAGTTAA
1 TCGAGTTAT
8519090 TCGAGTTAT
1 TCGAGTTAT
8519099 TCGA
1 TCGA
8519103 ATCAACTCGA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.26, C:0.13, G:0.23, T:0.39
Consensus pattern (9 bp):
TCGAGTTAT
Found at i:8519372 original size:9 final size:9
Alignment explanation
Indices: 8519358--8519386 Score: 58
Period size: 9 Copynumber: 3.2 Consensus size: 9
8519348 AATTTCACAT
8519358 TTTATATTA
1 TTTATATTA
8519367 TTTATATTA
1 TTTATATTA
8519376 TTTATATTA
1 TTTATATTA
8519385 TT
1 TT
8519387 GAATTGTTTA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (9 bp):
TTTATATTA
Found at i:8522949 original size:6 final size:6
Alignment explanation
Indices: 8522938--8522968 Score: 62
Period size: 6 Copynumber: 5.2 Consensus size: 6
8522928 AAATTGGATT
8522938 ATTAAA ATTAAA ATTAAA ATTAAA ATTAAA A
1 ATTAAA ATTAAA ATTAAA ATTAAA ATTAAA A
8522969 CAAATTTAAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 25 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (6 bp):
ATTAAA
Found at i:8528256 original size:2 final size:2
Alignment explanation
Indices: 8528249--8528280 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
8528239 GGTAGATTCT
8528249 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
8528281 CCCATTTGAT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
TC
Found at i:8531595 original size:19 final size:19
Alignment explanation
Indices: 8531571--8531608 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
8531561 ATGAAAAAAA
8531571 TTTAAATTTAAAATTTTAT
1 TTTAAATTTAAAATTTTAT
*
8531590 TTTAAATTTAAATTTTTAT
1 TTTAAATTTAAAATTTTAT
8531609 GTATAATTAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (19 bp):
TTTAAATTTAAAATTTTAT
Found at i:8531605 original size:13 final size:13
Alignment explanation
Indices: 8531568--8531605 Score: 51
Period size: 13 Copynumber: 3.0 Consensus size: 13
8531558 TATATGAAAA
*
8531568 AAATTTAAATTTA
1 AAATTTAAATTTT
*
8531581 AAATTT-TATTTT
1 AAATTTAAATTTT
8531593 AAATTTAAATTTT
1 AAATTTAAATTTT
8531606 TATGTATAAT
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
12 10 0.48
13 11 0.52
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (13 bp):
AAATTTAAATTTT
Found at i:8531616 original size:19 final size:19
Alignment explanation
Indices: 8531573--8531614 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
8531563 GAAAAAAATT
*
8531573 TAAATTTAAAATTTTATTT
1 TAAATTTAAAATTTTATTA
*
8531592 TAAATTTAAATTTTTATGTA
1 TAAATTTAAAATTTTAT-TA
8531612 TAA
1 TAA
8531615 TTATATTGAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
19 16 0.80
20 4 0.20
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.55
Consensus pattern (19 bp):
TAAATTTAAAATTTTATTA
Found at i:8534104 original size:19 final size:18
Alignment explanation
Indices: 8534035--8534104 Score: 61
Period size: 19 Copynumber: 3.8 Consensus size: 18
8534025 TCTTAAGTGA
8534035 AATAAAAATAATAAATTTT
1 AATAAAAAT-ATAAATTTT
* * * *
8534054 AATTAAGATAT-TATTTC
1 AATAAAAATATAAATTTT
*
8534071 AATAAAAAAATTAAATTTT
1 AATAAAAATA-TAAATTTT
8534090 ATATAAAAATATAAA
1 A-ATAAAAATATAAA
8534105 AATAATATTT
Statistics
Matches: 38, Mismatches: 10, Indels: 6
0.70 0.19 0.11
Matches are distributed among these distances:
17 11 0.29
18 3 0.08
19 16 0.42
20 8 0.21
ACGTcount: A:0.60, C:0.01, G:0.01, T:0.37
Consensus pattern (18 bp):
AATAAAAATATAAATTTT
Found at i:8534107 original size:26 final size:25
Alignment explanation
Indices: 8534071--8534121 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 25
8534061 ATATTATTTC
8534071 AATAAAAAAATTAA-ATTTTATATAAA
1 AATAAAAAAA-TAATATTTTAT-TAAA
*
8534097 AATATAAAAATAATATTTTATTAAA
1 AATAAAAAAATAATATTTTATTAAA
8534122 TGAAAATGAA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
25 7 0.30
26 16 0.70
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (25 bp):
AATAAAAAAATAATATTTTATTAAA
Found at i:8534154 original size:20 final size:21
Alignment explanation
Indices: 8534103--8534154 Score: 56
Period size: 21 Copynumber: 2.6 Consensus size: 21
8534093 TAAAAATATA
8534103 AAAATAATATTTTATTAAATG
1 AAAATAATATTTTATTAAATG
*
8534124 AAAATGAAT-TTTGA-TAAATG
1 AAAAT-AATATTTTATTAAATG
*
8534144 -AAATTATATTT
1 AAAATAATATTT
8534155 GTAAATCTCA
Statistics
Matches: 27, Mismatches: 2, Indels: 6
0.77 0.06 0.17
Matches are distributed among these distances:
18 2 0.07
19 7 0.26
20 6 0.22
21 9 0.33
22 3 0.11
ACGTcount: A:0.50, C:0.00, G:0.08, T:0.42
Consensus pattern (21 bp):
AAAATAATATTTTATTAAATG
Found at i:8554564 original size:45 final size:44
Alignment explanation
Indices: 8554507--8554598 Score: 130
Period size: 45 Copynumber: 2.1 Consensus size: 44
8554497 ACCAACAAGC
*
8554507 AAATAATAATATAATAAAAAGGAAAAGGACAAAAAAGGTAAAGAG
1 AAATAATAATATAATAAAAAGGAAAAAGA-AAAAAAGGTAAAGAG
* * * *
8554552 AAATAATCATATAATAAGAAGGAAAAAGATAAAAATGTAAAGAG
1 AAATAATAATATAATAAAAAGGAAAAAGAAAAAAAGGTAAAGAG
8554596 AAA
1 AAA
8554599 AAAGTGGAGG
Statistics
Matches: 42, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
44 16 0.38
45 26 0.62
ACGTcount: A:0.66, C:0.02, G:0.16, T:0.15
Consensus pattern (44 bp):
AAATAATAATATAATAAAAAGGAAAAAGAAAAAAAGGTAAAGAG
Found at i:8555693 original size:17 final size:15
Alignment explanation
Indices: 8555661--8555694 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 15
8555651 AATGAATTTT
8555661 TAAAAATAAAAAATA
1 TAAAAATAAAAAATA
8555676 TAAAAACTAAACAAATA
1 TAAAAA-TAAA-AAATA
8555693 TA
1 TA
8555695 CTAATAGTAC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 6 0.35
16 4 0.24
17 7 0.41
ACGTcount: A:0.74, C:0.06, G:0.00, T:0.21
Consensus pattern (15 bp):
TAAAAATAAAAAATA
Found at i:8557591 original size:31 final size:31
Alignment explanation
Indices: 8557550--8557608 Score: 91
Period size: 31 Copynumber: 1.9 Consensus size: 31
8557540 ATTAATGATG
* *
8557550 TATTCGTTAATTAAAATTATATGTTTATGTA
1 TATTCATTAATTAAAATTATATATTTATGTA
*
8557581 TATTCATTAATTAAAGTTATATATTTAT
1 TATTCATTAATTAAAATTATATATTTAT
8557609 AAAAAATTAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 25 1.00
ACGTcount: A:0.37, C:0.03, G:0.07, T:0.53
Consensus pattern (31 bp):
TATTCATTAATTAAAATTATATATTTATGTA
Found at i:8562307 original size:79 final size:80
Alignment explanation
Indices: 8562207--8562359 Score: 227
Period size: 79 Copynumber: 1.9 Consensus size: 80
8562197 CCAATATTGA
* * *
8562207 CCATAAATTCCCTCTAATAGTGGTTCTATTGTTGATATTGAGTTATTCTAGAATATCTTTTTGCC
1 CCATAAATCCCCTCTAATAGTGGTTCTATAGTTGATATTGAGTTATTCTAGAACATCTTTTTGCC
8562272 AAATATACTTATTCC
66 AAATATACTTATTCC
* * * *
8562287 CCAT-AATCCCCTCTATTAGTGGTTCTGTAGTTGATATTGAGTTATTGTAGAACATCTTTTTGGC
1 CCATAAATCCCCTCTAATAGTGGTTCTATAGTTGATATTGAGTTATTCTAGAACATCTTTTTGCC
*
8562351 AAATTTACT
66 AAATATACT
8562360 CTCAGATATA
Statistics
Matches: 65, Mismatches: 8, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
79 61 0.94
80 4 0.06
ACGTcount: A:0.26, C:0.17, G:0.14, T:0.43
Consensus pattern (80 bp):
CCATAAATCCCCTCTAATAGTGGTTCTATAGTTGATATTGAGTTATTCTAGAACATCTTTTTGCC
AAATATACTTATTCC
Found at i:8566315 original size:14 final size:15
Alignment explanation
Indices: 8566296--8566328 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
8566286 GGATCAAAGC
*
8566296 TAAAAATT-TTATAT
1 TAAAAATTCTTAAAT
8566310 TAAAAATTCTTAAAT
1 TAAAAATTCTTAAAT
8566325 TAAA
1 TAAA
8566329 TTATCAAATT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 8 0.47
15 9 0.53
ACGTcount: A:0.55, C:0.03, G:0.00, T:0.42
Consensus pattern (15 bp):
TAAAAATTCTTAAAT
Found at i:8568150 original size:125 final size:125
Alignment explanation
Indices: 8567868--8568173 Score: 447
Period size: 126 Copynumber: 2.4 Consensus size: 125
8567858 GATAAAATCA
* * * * * *
8567868 AAGCAGGATGCTTTATCAGAAGAATTTCTGAAGTCGCGCCCACGTGTACGTGCTTTTGCTACAGT
1 AAGCAGGATGCTTTATCAGAAGAATTTGTGAAATCGTGCCCTCGTGGACGCGCTTTTGCTACAGT
*
8567933 AGGTCCTGCAAAAATAATTTCAAGTTGACATTTCTGAGCAAATAGTATAAAAAAACGCTTC
66 AGGTCCTGAAAAAATAATTTCAAGTTGACATTTCTGAGCAAATAGTAT-AAAAAACGCTTC
* *
8567994 AAGCAGGATGCTTTATGAGAAGAATTTGTGAAATCGTGCCCTCGTGGACACGCTTTTGCTACAGT
1 AAGCAGGATGCTTTATCAGAAGAATTTGTGAAATCGTGCCCTCGTGGACGCGCTTTTGCTACAGT
* *
8568059 AGGTCCTGGAAAAAATAATTTCGAGTTGA-AGTTTCTGAGCAAATAGTAT-AAAAATGCTTC
66 AGGTCCT-GAAAAAATAATTTCAAGTTGACA-TTTCTGAGCAAATAGTATAAAAAACGCTTC
*
8568119 AAGCAGGATGCTTTATCAGAAGAATTTGTGAAATCATGCCCAT-GTGGACGCGCTT
1 AAGCAGGATGCTTTATCAGAAGAATTTGTGAAATCGTGCCC-TCGTGGACGCGCTT
8568174 ATCAAGACGA
Statistics
Matches: 163, Mismatches: 14, Indels: 7
0.89 0.08 0.04
Matches are distributed among these distances:
125 60 0.37
126 66 0.40
127 37 0.23
ACGTcount: A:0.32, C:0.17, G:0.22, T:0.29
Consensus pattern (125 bp):
AAGCAGGATGCTTTATCAGAAGAATTTGTGAAATCGTGCCCTCGTGGACGCGCTTTTGCTACAGT
AGGTCCTGAAAAAATAATTTCAAGTTGACATTTCTGAGCAAATAGTATAAAAAACGCTTC
Found at i:8572345 original size:5 final size:5
Alignment explanation
Indices: 8572335--8572359 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
8572325 TAATTTGTGG
8572335 TAAAA TAAAA TAAAA TAAAA TAAAA
1 TAAAA TAAAA TAAAA TAAAA TAAAA
8572360 CCTTTTTTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (5 bp):
TAAAA
Found at i:8578296 original size:4 final size:4
Alignment explanation
Indices: 8578289--8578314 Score: 52
Period size: 4 Copynumber: 6.5 Consensus size: 4
8578279 TATCTATCTA
8578289 TATG TATG TATG TATG TATG TATG TA
1 TATG TATG TATG TATG TATG TATG TA
8578315 CCTTGGATAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 22 1.00
ACGTcount: A:0.27, C:0.00, G:0.23, T:0.50
Consensus pattern (4 bp):
TATG
Found at i:8582626 original size:3 final size:3
Alignment explanation
Indices: 8582618--8582662 Score: 81
Period size: 3 Copynumber: 15.0 Consensus size: 3
8582608 TAAGGAGCCC
*
8582618 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TGT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
8582663 ATACACTCGA
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
3 40 1.00
ACGTcount: A:0.31, C:0.00, G:0.02, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:8588207 original size:29 final size:31
Alignment explanation
Indices: 8588140--8588217 Score: 81
Period size: 32 Copynumber: 2.5 Consensus size: 31
8588130 ATTATTAGCT
8588140 TTTAAGTACTAAAATGGATAAAGAAAAAAAAG
1 TTTAAGTACTAAAAT-GATAAAGAAAAAAAAG
* * *
8588172 TTCAAGTACTAAAAT-ATGATA-AAAAATAA-
1 TTTAAGTACTAAAATGAT-AAAGAAAAAAAAG
*
8588201 TTTAAGTACTCAAATGA
1 TTTAAGTACTAAAATGA
8588218 GAAAATAGGT
Statistics
Matches: 39, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
29 13 0.33
30 10 0.26
31 2 0.05
32 14 0.36
ACGTcount: A:0.55, C:0.06, G:0.12, T:0.27
Consensus pattern (31 bp):
TTTAAGTACTAAAATGATAAAGAAAAAAAAG
Found at i:8594188 original size:33 final size:33
Alignment explanation
Indices: 8594130--8594212 Score: 89
Period size: 33 Copynumber: 2.5 Consensus size: 33
8594120 TTTTTAAGAT
* ** *
8594130 TAATGAGAATTTTT-AAATATTTTAAAGTAACT-
1 TAATGAAAATTTTTAAAATAAATTAAA-AAACTA
* *
8594162 TAATTAAAATTTTTAAAATAAATTAAAAAATTA
1 TAATGAAAATTTTTAAAATAAATTAAAAAACTA
8594195 TAATGAAAATTTTTAAAA
1 TAATGAAAATTTTTAAAA
8594213 ATTTAATAGG
Statistics
Matches: 42, Mismatches: 7, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
32 15 0.36
33 27 0.64
ACGTcount: A:0.53, C:0.01, G:0.05, T:0.41
Consensus pattern (33 bp):
TAATGAAAATTTTTAAAATAAATTAAAAAACTA
Found at i:8599770 original size:22 final size:22
Alignment explanation
Indices: 8599744--8599800 Score: 105
Period size: 22 Copynumber: 2.6 Consensus size: 22
8599734 TCATATTAAT
*
8599744 AAGGTTAAGGTTTTAAGATTTC
1 AAGGTTAATGTTTTAAGATTTC
8599766 AAGGTTAATGTTTTAAGATTTC
1 AAGGTTAATGTTTTAAGATTTC
8599788 AAGGTTAATGTTT
1 AAGGTTAATGTTT
8599801 CAAATTTTGT
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
22 34 1.00
ACGTcount: A:0.32, C:0.04, G:0.21, T:0.44
Consensus pattern (22 bp):
AAGGTTAATGTTTTAAGATTTC
Found at i:8600799 original size:32 final size:32
Alignment explanation
Indices: 8600756--8600818 Score: 99
Period size: 32 Copynumber: 2.0 Consensus size: 32
8600746 CTAAATAGTA
* *
8600756 TGTGATGAAATACGTTTTATGGATTGCTTGTC
1 TGTGATAAAATAAGTTTTATGGATTGCTTGTC
*
8600788 TGTGATAAAATAAGTTTTATGGGTTGCTTGT
1 TGTGATAAAATAAGTTTTATGGATTGCTTGT
8600819 TATGTTCTGC
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
32 28 1.00
ACGTcount: A:0.24, C:0.06, G:0.25, T:0.44
Consensus pattern (32 bp):
TGTGATAAAATAAGTTTTATGGATTGCTTGTC
Found at i:8600898 original size:96 final size:97
Alignment explanation
Indices: 8600728--8600920 Score: 352
Period size: 96 Copynumber: 2.0 Consensus size: 97
8600718 GGTGGATTGC
*
8600728 CTGCTTACATCTCTTAAGCTAAATAGTATGTGATGAAATACGTTTTATGGATTGCTTGTCTGTGA
1 CTGCTTACATCTCTTAAGCTAAATAGTATGTGATGAAATACGTTTTATCGATTGCTTGTCTGTGA
8600793 TAAAATAAGTTTTATGGGTTGCTTGTTATGTT
66 TAAAATAAGTTTTATGGGTTGCTTGTTATGTT
*
8600825 CTGCTTACATCTCTTAAGCT-AATAGTATGTGATGGAATACGTTTTATCGATTGCTTGTCTGTGA
1 CTGCTTACATCTCTTAAGCTAAATAGTATGTGATGAAATACGTTTTATCGATTGCTTGTCTGTGA
*
8600889 TAAAGTAAGTTTTATGGGTTGCTTGTTATGTT
66 TAAAATAAGTTTTATGGGTTGCTTGTTATGTT
8600921 TTGTTTATGG
Statistics
Matches: 93, Mismatches: 3, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
96 73 0.78
97 20 0.22
ACGTcount: A:0.24, C:0.11, G:0.21, T:0.44
Consensus pattern (97 bp):
CTGCTTACATCTCTTAAGCTAAATAGTATGTGATGAAATACGTTTTATCGATTGCTTGTCTGTGA
TAAAATAAGTTTTATGGGTTGCTTGTTATGTT
Found at i:8613080 original size:22 final size:22
Alignment explanation
Indices: 8613055--8613111 Score: 87
Period size: 22 Copynumber: 2.6 Consensus size: 22
8613045 TCATATTAAT
*
8613055 AAGGTTAAGGTTTGAAGATTTC
1 AAGGTTAATGTTTGAAGATTTC
* *
8613077 AAGGGTAATGTTTTAAGATTTC
1 AAGGTTAATGTTTGAAGATTTC
8613099 AAGGTTAATGTTT
1 AAGGTTAATGTTT
8613112 CAATTTTTGT
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
22 31 1.00
ACGTcount: A:0.32, C:0.04, G:0.25, T:0.40
Consensus pattern (22 bp):
AAGGTTAATGTTTGAAGATTTC
Found at i:8614111 original size:32 final size:32
Alignment explanation
Indices: 8614068--8614130 Score: 90
Period size: 32 Copynumber: 2.0 Consensus size: 32
8614058 CTAAATAGTA
* *
8614068 TGTGATGAAATATGTTTTATGGAATGCTTGTC
1 TGTGATAAAATAAGTTTTATGGAATGCTTGTC
**
8614100 TGTGATAAAATAAGTTTTATGGGTTGCTTGT
1 TGTGATAAAATAAGTTTTATGGAATGCTTGT
8614131 TATGTTCTGC
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
32 27 1.00
ACGTcount: A:0.25, C:0.05, G:0.25, T:0.44
Consensus pattern (32 bp):
TGTGATAAAATAAGTTTTATGGAATGCTTGTC
Found at i:8614210 original size:96 final size:97
Alignment explanation
Indices: 8614040--8614232 Score: 343
Period size: 96 Copynumber: 2.0 Consensus size: 97
8614030 GGTGGATTGC
*
8614040 CTGCTTACATCTCTTAAGCTAAATAGTATGTGATGAAATATGTTTTATGGAATGCTTGTCTGTGA
1 CTGCTTACATCTCTTAAGCTAAATAGTATGTGATGAAATACGTTTTATGGAATGCTTGTCTGTGA
8614105 TAAAATAAGTTTTATGGGTTGCTTGTTATGTT
66 TAAAATAAGTTTTATGGGTTGCTTGTTATGTT
* *
8614137 CTGCTTACATCTCTTAAGCT-AATAGTATGTGATGGAATACGTTTTATGGATTGCTTGTCTGTGA
1 CTGCTTACATCTCTTAAGCTAAATAGTATGTGATGAAATACGTTTTATGGAATGCTTGTCTGTGA
*
8614201 TAAAGTAAGTTTTATGGGTTGCTTGTTATGTT
66 TAAAATAAGTTTTATGGGTTGCTTGTTATGTT
8614233 TTGTTTATGG
Statistics
Matches: 92, Mismatches: 4, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
96 72 0.78
97 20 0.22
ACGTcount: A:0.25, C:0.10, G:0.22, T:0.44
Consensus pattern (97 bp):
CTGCTTACATCTCTTAAGCTAAATAGTATGTGATGAAATACGTTTTATGGAATGCTTGTCTGTGA
TAAAATAAGTTTTATGGGTTGCTTGTTATGTT
Found at i:8625193 original size:2 final size:2
Alignment explanation
Indices: 8625186--8625213 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
8625176 TCAAGCTTTC
8625186 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
8625214 GAATCATTAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:8639819 original size:84 final size:84
Alignment explanation
Indices: 8639705--8640140 Score: 531
Period size: 84 Copynumber: 5.2 Consensus size: 84
8639695 AGTTGCTTCC
* * * ** * ***
8639705 GCTTTAGCGATCTCAAAATCGGCACATTTTCTTGCTTCAACAGCCTTCTTCTTGGTTTCTTCTGC
1 GCTTTAGCCATCTCCAAATCAGCATGTTTTCTTTCTTCAACAGCCTTCTTCTTCAATTCTTCTGC
* **
8639770 AATCTTCCTTTGCGCCTCC
66 AATCTTCCTTTGCTCCTGT
* ** *
8639789 GCTTCAGCCATCTGTAAATCAGCATGTTTTCTTTCTTCAACTGCCTTCTTCTT-AATCTCTTCTG
1 GCTTTAGCCATCTCCAAATCAGCATGTTTTCTTTCTTCAACAGCCTTCTTCTTCAAT-TCTTCTG
8639853 CAATCTT-CTTCTGCTCCTGT
65 CAATCTTCCTT-TGCTCCTGT
* * * *
8639873 GCTTTAGCCATCTCCAAAGCCA-CATGTTTTCTTTCTTCAACAACCTTCTTCTTCGACTCTTCTG
1 GCTTTAGCCATCTCCAAA-TCAGCATGTTTTCTTTCTTCAACAGCCTTCTTCTTCAATTCTTCTG
*
8639937 CAATCTTCCTCTGCTCCTGT
65 CAATCTTCCTTTGCTCCTGT
* *
8639957 GCTTTAGCCATCTCCAAAGCAGCATGTTTTCTTTCTTCAACAACCTTCTTCTTCAATTCTTCTGC
1 GCTTTAGCCATCTCCAAATCAGCATGTTTTCTTTCTTCAACAGCCTTCTTCTTCAATTCTTCTGC
*
8640022 AGTCTTCCTCTT-CTCCTGT
66 AATCTTCCT-TTGCTCCTGT
* **
8640041 GCTTTAGCAATCTCCAAATCAGCACATTTTCTTTCTTCAACAGCCTTCTTCTTCAATTCTTCTGC
1 GCTTTAGCCATCTCCAAATCAGCATGTTTTCTTTCTTCAACAGCCTTCTTCTTCAATTCTTCTGC
*
8640106 AGTCTTCCTCTT-CTCCTGT
66 AATCTTCCT-TTGCTCCTGT
*
8640125 GCTTTAGCAATCTCCA
1 GCTTTAGCCATCTCCA
8640141 NNNNNNNNNN
Statistics
Matches: 312, Mismatches: 33, Indels: 14
0.87 0.09 0.04
Matches are distributed among these distances:
83 6 0.02
84 300 0.96
85 6 0.02
ACGTcount: A:0.17, C:0.32, G:0.11, T:0.41
Consensus pattern (84 bp):
GCTTTAGCCATCTCCAAATCAGCATGTTTTCTTTCTTCAACAGCCTTCTTCTTCAATTCTTCTGC
AATCTTCCTTTGCTCCTGT
Found at i:8640434 original size:81 final size:83
Alignment explanation
Indices: 8640241--8640453 Score: 274
Period size: 81 Copynumber: 2.6 Consensus size: 83
8640231 NNNNNNNNNN
*
8640241 CTCCTGTGCTTTAGCAATCTCCAAATCAGCACATTTTCTTTCTTCAACAGCCTTCTTCTTCATCT
1 CTCCTGTGCTTTAGCCATCTCC-AATCAGCACATTTTCTTTCTTCAACAGCCTTCTTCTTCATCT
*
8640306 CTTCTGCAACCTTCCTCTC
65 CTTCTGCAAACTTCCTCTC
* *
8640325 CTCCTGTGCTTTAGCCATCTCCAGATCAGCACATTTTCTATCTTCAACAG-C-T-TTCTTAGAT-
1 CTCCTGTGCTTTAGCCATCTCCA-ATCAGCACATTTTCTTTCTTCAACAGCCTTCTTCTT-CATC
* *
8640386 TTTTC-GACAAACTTCCTCTG
64 TCTTCTG-CAAACTTCCTCTC
* *
8640406 CTCCTTTGCTTTAGCCATCTCCGAATCAGCACCTTTTCTTTCTTCAAC
1 CTCCTGTGCTTTAGCCATCTCC-AATCAGCACATTTTCTTTCTTCAAC
8640454 CACCTTCCTT
Statistics
Matches: 116, Mismatches: 9, Indels: 11
0.85 0.07 0.08
Matches are distributed among these distances:
80 1 0.01
81 63 0.54
82 4 0.03
83 2 0.02
84 46 0.40
ACGTcount: A:0.19, C:0.33, G:0.09, T:0.39
Consensus pattern (83 bp):
CTCCTGTGCTTTAGCCATCTCCAATCAGCACATTTTCTTTCTTCAACAGCCTTCTTCTTCATCTC
TTCTGCAAACTTCCTCTC
Found at i:8640972 original size:17 final size:17
Alignment explanation
Indices: 8640950--8640984 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
8640940 GGGCAAAGTT
*
8640950 ACCAATTAGGGGAACAA
1 ACCAATTAGGAGAACAA
8640967 ACCAATTAGGAGAACAA
1 ACCAATTAGGAGAACAA
8640984 A
1 A
8640985 AATTGAAGGA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.51, C:0.17, G:0.20, T:0.11
Consensus pattern (17 bp):
ACCAATTAGGAGAACAA
Found at i:8642725 original size:19 final size:22
Alignment explanation
Indices: 8642696--8642739 Score: 67
Period size: 19 Copynumber: 2.1 Consensus size: 22
8642686 TCACGTCAAC
8642696 AAATAATTTTAAA-AT-TATTA
1 AAATAATTTTAAATATATATTA
8642716 AAAT-ATTTTAAATATATATTA
1 AAATAATTTTAAATATATATTA
8642737 AAA
1 AAA
8642740 GTAGGATGAA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
19 8 0.36
20 6 0.27
21 8 0.36
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (22 bp):
AAATAATTTTAAATATATATTA
Found at i:8648203 original size:30 final size:30
Alignment explanation
Indices: 8648168--8648229 Score: 124
Period size: 30 Copynumber: 2.1 Consensus size: 30
8648158 ACTTTATAAT
8648168 TGTGCTCCTGCGGTGTGATGGTTATAACAG
1 TGTGCTCCTGCGGTGTGATGGTTATAACAG
8648198 TGTGCTCCTGCGGTGTGATGGTTATAACAG
1 TGTGCTCCTGCGGTGTGATGGTTATAACAG
8648228 TG
1 TG
8648230 AAGAATAGTA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.16, C:0.16, G:0.34, T:0.34
Consensus pattern (30 bp):
TGTGCTCCTGCGGTGTGATGGTTATAACAG
Found at i:8649712 original size:7 final size:7
Alignment explanation
Indices: 8649697--8649917 Score: 65
Period size: 7 Copynumber: 30.6 Consensus size: 7
8649687 TTTTAGTGTT
*
8649697 TTTAAGG
1 TTTAGGG
8649704 TTTAGGG
1 TTTAGGG
* *
8649711 TTTTGTGTT
1 TTTAG-G-G
8649720 TTTAGGG
1 TTTAGGG
*
8649727 TTTATGGTC
1 TTTA-GG-G
*
8649736 TTTA-GT
1 TTTAGGG
8649742 TTTAGGG
1 TTTAGGG
*
8649749 TTTA-TG
1 TTTAGGG
8649755 TTTAGGG
1 TTTAGGG
**
8649762 TTTATGAT
1 TTTA-GGG
*
8649770 TTTA-TG
1 TTTAGGG
*
8649776 TTCAGGG
1 TTTAGGG
8649783 TTTAGGG
1 TTTAGGG
**
8649790 TTTATGAT
1 TTTA-GGG
*
8649798 TTTA-TG
1 TTTAGGG
8649804 TTTAGGG
1 TTTAGGG
*
8649811 TTTATGG
1 TTTAGGG
*
8649818 TTTATGG
1 TTTAGGG
8649825 TTTATGGG
1 TTTA-GGG
**
8649833 TTTA-TT
1 TTTAGGG
8649839 TTTAGGG
1 TTTAGGG
* *
8649846 TTTAAGT
1 TTTAGGG
*
8649853 TTTAGGTTT
1 TTTAGG--G
8649862 TTTAGGG
1 TTTAGGG
*
8649869 TTTATGGT
1 TTTA-GGG
*
8649877 TTTAGAGT
1 TTTAG-GG
* *
8649885 TTTTGGT
1 TTTAGGG
**
8649892 TTTATGTT
1 TTTA-GGG
8649900 TTTAGGG
1 TTTAGGG
8649907 TTTAGGG
1 TTTAGGG
8649914 TTTA
1 TTTA
8649918 TGTTTTTTTT
Statistics
Matches: 159, Mismatches: 38, Indels: 34
0.69 0.16 0.15
Matches are distributed among these distances:
6 20 0.13
7 86 0.54
8 38 0.24
9 15 0.09
ACGTcount: A:0.15, C:0.01, G:0.28, T:0.56
Consensus pattern (7 bp):
TTTAGGG
Found at i:8649743 original size:23 final size:23
Alignment explanation
Indices: 8649694--8649754 Score: 72
Period size: 23 Copynumber: 2.7 Consensus size: 23
8649684 TGATTTTAGT
* * *
8649694 GTTTTTAAGGTTTAGGGTTTTGT
1 GTTTTTAGGGTTTATGGTTTTGA
8649717 GTTTTTAGGGTTTATGGTCTTT-A
1 GTTTTTAGGGTTTATGGT-TTTGA
8649740 G-TTTTAGGGTTTATG
1 GTTTTTAGGGTTTATG
8649755 TTTAGGGTTT
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
22 14 0.41
23 17 0.50
24 3 0.09
ACGTcount: A:0.13, C:0.02, G:0.30, T:0.56
Consensus pattern (23 bp):
GTTTTTAGGGTTTATGGTTTTGA
Found at i:8649764 original size:35 final size:34
Alignment explanation
Indices: 8649720--8649854 Score: 131
Period size: 35 Copynumber: 4.1 Consensus size: 34
8649710 GTTTTGTGTT
*
8649720 TTTAGGGTTTATGGTCTTTA-GTTTTAGGGTTTATG
1 TTTAGGGTTTATGAT-TTTATG-TTTAGGGTTTATG
*
8649755 TTTAGGGTTTATGATTTTATGTTCA-GG-----G
1 TTTAGGGTTTATGATTTTATGTTTAGGGTTTATG
8649783 TTTAGGGTTTATGATTTTATGTTTAGGGTTTATGG
1 TTTAGGGTTTATGATTTTATGTTTAGGGTTTAT-G
* ** * *
8649818 TTTATGGTTTATGGGTTTATTTTTAGGGTTTAAG
1 TTTAGGGTTTATGATTTTATGTTTAGGGTTTATG
8649852 TTT
1 TTT
8649855 TAGGTTTTTT
Statistics
Matches: 84, Mismatches: 8, Indels: 17
0.77 0.07 0.16
Matches are distributed among these distances:
28 25 0.30
29 2 0.02
33 2 0.02
34 11 0.13
35 44 0.52
ACGTcount: A:0.16, C:0.01, G:0.27, T:0.55
Consensus pattern (34 bp):
TTTAGGGTTTATGATTTTATGTTTAGGGTTTATG
Found at i:8649772 original size:28 final size:26
Alignment explanation
Indices: 8649736--8649886 Score: 112
Period size: 28 Copynumber: 5.6 Consensus size: 26
8649726 GTTTATGGTC
8649736 TTTA-GTTTTAGGGTTTATGTTTAGGG
1 TTTATGTTTTA-GGTTTATGTTTAGGG
* * *
8649762 TTTATGATTTTATGTTCAGGGTTTAGGG
1 TTTATG-TTTTAGGTTTA-TGTTTAGGG
* * *
8649790 TTTATGATTTTATGTTTAGGGTTTATGG
1 TTTATG-TTTTAGGTTTA-TGTTTAGGG
* *
8649818 TTTATGGTTTATGGGTTTATTTTTAGGG
1 TTTAT-GTTT-TAGGTTTATGTTTAGGG
*
8649846 TTTAAGTTTTAGG-TT-T-TTTAGGG
1 TTTATGTTTTAGGTTTATGTTTAGGG
8649869 TTTATGGTTTTAGAGTTT
1 TTTAT-GTTTTAG-GTTT
8649887 TTGGTTTTAT
Statistics
Matches: 104, Mismatches: 13, Indels: 16
0.78 0.10 0.12
Matches are distributed among these distances:
23 11 0.11
24 8 0.08
25 3 0.03
26 9 0.09
27 9 0.09
28 57 0.55
29 7 0.07
ACGTcount: A:0.17, C:0.01, G:0.27, T:0.56
Consensus pattern (26 bp):
TTTATGTTTTAGGTTTATGTTTAGGG
Found at i:8649773 original size:21 final size:20
Alignment explanation
Indices: 8649749--8650080 Score: 151
Period size: 21 Copynumber: 15.8 Consensus size: 20
8649739 AGTTTTAGGG
8649749 TTTATGTTTAGGGTTTATGAT
1 TTTATGTTTAGGGTTTATG-T
* * *
8649770 TTTATGTTCAGGGTTTAGGG
1 TTTATGTTTAGGGTTTATGT
* * *
8649790 TTTATGATTTTA-TGTTTAGGG
1 TTTATG--TTTAGGGTTTATGT
* *
8649811 TTTATGGTTTATGGTTTATGGG
1 TTTAT-GTTTAGGGTTTAT-GT
* *
8649833 TTTATTTTTAGGGTTTAAGT
1 TTTATGTTTAGGGTTTATGT
*
8649853 TTTAGGTTTTTTAGGGTTTATGGT
1 TTTA---TGTTTAGGGTTTAT-GT
* * *
8649877 TTTAGAGTTTTTGGTTTTATGTT
1 TTTA-TG-TTTAGGGTTTATG-T
*
8649900 TTTAGGGTTTAGGGTTTATGT
1 TTTA-TGTTTAGGGTTTATGT
* * *
8649921 TTT-TTTTTCA--TTTTAGGGT
1 TTTATGTTT-AGGGTTTA-TGT
* * *
8649940 TTTATGTTGAGGGTTTTTGG
1 TTTATGTTTAGGGTTTATGT
8649960 TTTATGTTTAGGGTTTA-G-
1 TTTATGTTTAGGGTTTATGT
*
8649978 --TATTTTTAGGGTTTAATG-
1 TTTATGTTTAGGGTTT-ATGT
* *
8649996 TTCATGGTTTTTAGGGTTTAGAGT
1 TTTAT-G--TTTAGGGTTTA-TGT
*
8650020 TTTATGATTTATGGTTTATGGT
1 TTTATG-TTTAGGGTTTAT-GT
*
8650042 TTTATTGCTTAGGGTTTATGTT
1 TTTA-TGTTTAGGGTTTATG-T
8650064 TTTATGTTTAGGGTTTA
1 TTTATGTTTAGGGTTTA
8650081 GGGGTTAGAG
Statistics
Matches: 240, Mismatches: 43, Indels: 56
0.71 0.13 0.17
Matches are distributed among these distances:
16 13 0.05
17 1 0.00
18 5 0.02
19 10 0.04
20 37 0.15
21 65 0.27
22 55 0.23
23 44 0.18
24 10 0.04
ACGTcount: A:0.16, C:0.01, G:0.26, T:0.57
Consensus pattern (20 bp):
TTTATGTTTAGGGTTTATGT
Found at i:8649895 original size:23 final size:23
Alignment explanation
Indices: 8649818--8649924 Score: 98
Period size: 23 Copynumber: 4.8 Consensus size: 23
8649808 GGGTTTATGG
* *
8649818 TTTATGGTTTATGGGTTTA--TT
1 TTTAGGGTTTATGGTTTTAGGTT
*
8649839 TTTAGGGTTTA-AGTTTTAGGTTT
1 TTTAGGGTTTATGGTTTTAGG-TT
8649862 TTTAGGGTTTATGGTTTTAGAGTT
1 TTTAGGGTTTATGGTTTTAG-GTT
* * *
8649886 TTT-GGTTTTATGTTTTTAGG-G
1 TTTAGGGTTTATGGTTTTAGGTT
*
8649907 TTTAGGGTTTATGTTTTT
1 TTTAGGGTTTATGGTTTT
8649925 TTTTCATTTT
Statistics
Matches: 72, Mismatches: 8, Indels: 11
0.79 0.09 0.12
Matches are distributed among these distances:
20 5 0.07
21 13 0.18
22 14 0.19
23 27 0.38
24 12 0.17
25 1 0.01
ACGTcount: A:0.14, C:0.00, G:0.26, T:0.60
Consensus pattern (23 bp):
TTTAGGGTTTATGGTTTTAGGTT
Found at i:8649925 original size:23 final size:23
Alignment explanation
Indices: 8649862--8649924 Score: 83
Period size: 22 Copynumber: 2.8 Consensus size: 23
8649852 TTTTAGGTTT
* *
8649862 TTTAGGGTTTATGGTTTTAGAGT
1 TTTAGGGTTTATGTTTTTAGAGG
* *
8649885 TTTTGGTTTTATGTTTTTAG-GG
1 TTTAGGGTTTATGTTTTTAGAGG
8649907 TTTAGGGTTTATGTTTTT
1 TTTAGGGTTTATGTTTTT
8649925 TTTTCATTTT
Statistics
Matches: 34, Mismatches: 6, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
22 17 0.50
23 17 0.50
ACGTcount: A:0.13, C:0.00, G:0.27, T:0.60
Consensus pattern (23 bp):
TTTAGGGTTTATGTTTTTAGAGG
Found at i:8650035 original size:22 final size:22
Alignment explanation
Indices: 8650005--8650080 Score: 86
Period size: 22 Copynumber: 3.5 Consensus size: 22
8649995 GTTCATGGTT
8650005 TTTAGGGTTTA-GAGTTTTATGA
1 TTTAGGGTTTATG-GTTTTATGA
*
8650027 TTTATGGTTTATGGTTTTATTG-
1 TTTAGGGTTTATGGTTTTA-TGA
* *
8650049 CTTAGGGTTTATGTTTTTATG-
1 TTTAGGGTTTATGGTTTTATGA
8650070 TTTAGGGTTTA
1 TTTAGGGTTTA
8650081 GGGGTTAGAG
Statistics
Matches: 47, Mismatches: 5, Indels: 5
0.82 0.09 0.09
Matches are distributed among these distances:
21 12 0.26
22 32 0.68
23 3 0.06
ACGTcount: A:0.17, C:0.01, G:0.25, T:0.57
Consensus pattern (22 bp):
TTTAGGGTTTATGGTTTTATGA
Found at i:8650041 original size:38 final size:39
Alignment explanation
Indices: 8649966--8650044 Score: 99
Period size: 38 Copynumber: 2.1 Consensus size: 39
8649956 TTGGTTTATG
* *
8649966 TTTAGGGTTTAGTATTTTTAGGGTTTAATGTTCATGGTT
1 TTTAGGGTTTAGTAGTTTTAGGATTTAATGTTCATGGTT
* *
8650005 TTTAGGGTTTAG-AGTTTTATGATTT-ATGGTTTATGGTT
1 TTTAGGGTTTAGTAGTTTTAGGATTTAAT-GTTCATGGTT
8650043 TT
1 TT
8650045 ATTGCTTAGG
Statistics
Matches: 35, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
37 2 0.06
38 21 0.60
39 12 0.34
ACGTcount: A:0.18, C:0.01, G:0.25, T:0.56
Consensus pattern (39 bp):
TTTAGGGTTTAGTAGTTTTAGGATTTAATGTTCATGGTT
Found at i:8650045 original size:15 final size:15
Alignment explanation
Indices: 8649999--8650241 Score: 50
Period size: 15 Copynumber: 16.6 Consensus size: 15
8649989 TTTAATGTTC
*
8649999 ATGGTTTTTAGGGTTT
1 ATGG-TTTTATGGTTT
*
8650015 A-GAGTTTTATGATTT
1 ATG-GTTTTATGGTTT
8650030 ATGG-TTTATGGTTTT
1 ATGGTTTTATGG-TTT
* * *
8650045 ATTG-CTTAGGGTTT
1 ATGGTTTTATGGTTT
*
8650059 ATGTTTTTAT-GTTT
1 ATGGTTTTATGGTTT
* * *
8650073 A-GGGTTTAGGGGTT
1 ATGGTTTTATGGTTT
***
8650087 A-GAGTTTTATTACTT
1 ATG-GTTTTATGGTTT
* *
8650102 A-GGGTTTAGGGTTT
1 ATGGTTTTATGGTTT
* *
8650116 GTGGTTTTATGATTTT
1 ATGGTTTTATG-GTTT
*
8650132 AT-TTTTTA-GTGTTT
1 ATGGTTTTATG-GTTT
*
8650146 AT-ATTTTA-GGTTT
1 ATGGTTTTATGGTTT
* * **
8650159 TTAGGGTTTATATTTT
1 AT-GGTTTTATGGTTT
*
8650175 A-GGTTTTATTGTTT
1 ATGGTTTTATGGTTT
*
8650189 AT-GTTTTA-GGATTC
1 ATGGTTTTATGG-TTT
*
8650203 ATGGTTTTA-GGATTC
1 ATGGTTTTATGG-TTT
8650218 ATGGTTTTA-GGATTT
1 ATGGTTTTATGG-TTT
*
8650233 ATAGTTTTA
1 ATGGTTTTA
8650242 GTGTTTTTAG
Statistics
Matches: 167, Mismatches: 46, Indels: 29
0.69 0.19 0.12
Matches are distributed among these distances:
13 11 0.07
14 61 0.37
15 85 0.51
16 10 0.06
ACGTcount: A:0.18, C:0.02, G:0.24, T:0.56
Consensus pattern (15 bp):
ATGGTTTTATGGTTT
Found at i:8650081 original size:28 final size:29
Alignment explanation
Indices: 8650050--8650126 Score: 88
Period size: 29 Copynumber: 2.7 Consensus size: 29
8650040 GTTTTATTGC
*
8650050 TTAGGGTTTATGTTTTTATGT-TTAGGGT
1 TTAGGGTTTATGGTTTTATGTATTAGGGT
*
8650078 TTAGGGGTTA-GAGTTTTAT-TACTTAGGGT
1 TTAGGGTTTATG-GTTTTATGTA-TTAGGGT
*
8650107 TTAGGGTTTGTGGTTTTATG
1 TTAGGGTTTATGGTTTTATG
8650127 ATTTTATTTT
Statistics
Matches: 40, Mismatches: 4, Indels: 8
0.77 0.08 0.15
Matches are distributed among these distances:
27 2 0.05
28 15 0.38
29 22 0.55
30 1 0.03
ACGTcount: A:0.16, C:0.01, G:0.31, T:0.52
Consensus pattern (29 bp):
TTAGGGTTTATGGTTTTATGTATTAGGGT
Found at i:8650159 original size:22 final size:22
Alignment explanation
Indices: 8650121--8650198 Score: 97
Period size: 22 Copynumber: 3.6 Consensus size: 22
8650111 GGTTTGTGGT
*
8650121 TTTATGATTTTA-TTTTTTAGTG
1 TTTAT-ATTTTAGGTTTTTAGTG
*
8650143 TTTATATTTTAGGTTTTTAGGG
1 TTTATATTTTAGGTTTTTAGTG
*
8650165 TTTATATTTTAGG-TTTTATTG
1 TTTATATTTTAGGTTTTTAGTG
*
8650186 TTTATGTTTTAGG
1 TTTATATTTTAGG
8650199 ATTCATGGTT
Statistics
Matches: 50, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
21 24 0.48
22 26 0.52
ACGTcount: A:0.18, C:0.00, G:0.18, T:0.64
Consensus pattern (22 bp):
TTTATATTTTAGGTTTTTAGTG
Found at i:8650209 original size:21 final size:21
Alignment explanation
Indices: 8650142--8650209 Score: 64
Period size: 21 Copynumber: 3.2 Consensus size: 21
8650132 ATTTTTTAGT
* * *
8650142 GTTTATATTTTAGGTTTTTAGG
1 GTTTATATTTTAGG-ATTCATG
* * *
8650164 GTTTATATTTTAGGTTTTATT
1 GTTTATATTTTAGGATTCATG
*
8650185 GTTTATGTTTTAGGATTCATG
1 GTTTATATTTTAGGATTCATG
8650206 GTTT
1 GTTT
8650210 TAGGATTCAT
Statistics
Matches: 40, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
21 26 0.65
22 14 0.35
ACGTcount: A:0.18, C:0.01, G:0.21, T:0.60
Consensus pattern (21 bp):
GTTTATATTTTAGGATTCATG
Found at i:8650242 original size:15 final size:15
Alignment explanation
Indices: 8650191--8650242 Score: 86
Period size: 15 Copynumber: 3.5 Consensus size: 15
8650181 TATTGTTTAT
8650191 GTTTTAGGATTCATG
1 GTTTTAGGATTCATG
8650206 GTTTTAGGATTCATG
1 GTTTTAGGATTCATG
* *
8650221 GTTTTAGGATTTATA
1 GTTTTAGGATTCATG
8650236 GTTTTAG
1 GTTTTAG
8650243 TGTTTTTAGG
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 35 1.00
ACGTcount: A:0.21, C:0.04, G:0.25, T:0.50
Consensus pattern (15 bp):
GTTTTAGGATTCATG
Found at i:8650278 original size:38 final size:36
Alignment explanation
Indices: 8650236--8650353 Score: 85
Period size: 38 Copynumber: 3.4 Consensus size: 36
8650226 AGGATTTATA
8650236 GTTTTAGTGTTTTTAGGGTTCATTGTTTGTGTTGTTAG
1 GTTTTAGTGTTTTTAGGGTT-ATTG-TTGTGTTGTTAG
*
8650274 GTTTTAAG-G--TTTAGGGTT-TAG--GT-TT-TATA-
1 GTTTT-AGTGTTTTTAGGGTTATTGTTGTGTTGT-TAG
8650303 GTTTTA-TAGTTTTTAGGGTTTATTGCTTGTGTTGTTAG
1 GTTTTAGT-GTTTTTAGGG-TTATTG-TTGTGTTGTTAG
*
8650341 GTTTTAATGTTTT
1 GTTTTAGTGTTTT
8650354 ATGTTTTTAT
Statistics
Matches: 63, Mismatches: 2, Indels: 30
0.66 0.02 0.32
Matches are distributed among these distances:
28 1 0.02
29 7 0.11
30 4 0.06
31 9 0.14
32 2 0.03
33 2 0.03
34 2 0.03
36 11 0.17
37 4 0.06
38 18 0.29
39 3 0.05
ACGTcount: A:0.14, C:0.02, G:0.26, T:0.58
Consensus pattern (36 bp):
GTTTTAGTGTTTTTAGGGTTATTGTTGTGTTGTTAG
Found at i:8650302 original size:67 final size:67
Alignment explanation
Indices: 8650223--8650352 Score: 208
Period size: 67 Copynumber: 1.9 Consensus size: 67
8650213 GATTCATGGT
*
8650223 TTTAGGATTTATAGTTTTAGT-GTTTTTAGGGTTCATTGTTTGTGTTGTTAGGTTTTAAGGTTTA
1 TTTAGGATTTATAGTTTTA-TAGTTTTTAGGGTTCATTGCTTGTGTTGTTAGGTTTTAAGGTTTA
8650287 GGG
65 GGG
* * *
8650290 TTTAGGTTTTATAGTTTTATAGTTTTTAGGGTTTATTGCTTGTGTTGTTAGGTTTTAATGTTT
1 TTTAGGATTTATAGTTTTATAGTTTTTAGGGTTCATTGCTTGTGTTGTTAGGTTTTAAGGTTT
8650353 TATGTTTTTA
Statistics
Matches: 58, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
66 1 0.02
67 57 0.98
ACGTcount: A:0.16, C:0.02, G:0.25, T:0.57
Consensus pattern (67 bp):
TTTAGGATTTATAGTTTTATAGTTTTTAGGGTTCATTGCTTGTGTTGTTAGGTTTTAAGGTTTAG
GG
Found at i:8650385 original size:44 final size:42
Alignment explanation
Indices: 8650290--8650418 Score: 125
Period size: 44 Copynumber: 2.9 Consensus size: 42
8650280 AGGTTTAGGG
* ** *
8650290 TTTAGGTTTTATAGTTTTATAGTTTTTAGGGTTTATTGCTTGTGT
1 TTTAGGTTTTAT-GTTTTAT-GTTTTTA-TGTTTAGGGTTTGTGT
8650335 TGTTAGGTTTTAATGTTTTATGTTTTTATGTTTAGGGTTTGTGGT
1 T-TTAGGTTTT-ATGTTTTATGTTTTTATGTTTAGGGTTTGT-GT
* *
8650380 TTTAGGATTTTATTTTTTAT-TGTTTATGTTTTAGGGTTT
1 TTTAGG-TTTTATGTTTTATGTTTTTATG-TTTAGGGTTT
8650419 AGTATTTATA
Statistics
Matches: 73, Mismatches: 6, Indels: 11
0.81 0.07 0.12
Matches are distributed among these distances:
43 7 0.10
44 33 0.45
45 15 0.21
46 16 0.22
47 2 0.03
ACGTcount: A:0.15, C:0.01, G:0.22, T:0.62
Consensus pattern (42 bp):
TTTAGGTTTTATGTTTTATGTTTTTATGTTTAGGGTTTGTGT
Found at i:8650418 original size:14 final size:14
Alignment explanation
Indices: 8650359--8650453 Score: 59
Period size: 14 Copynumber: 6.7 Consensus size: 14
8650349 GTTTTATGTT
8650359 TTTATG-TTTAGGG
1 TTTATGTTTTAGGG
* *
8650372 TTTGTGGTTTTAGGAT
1 TTTAT-GTTTTAGG-G
* **
8650388 TTTATTTTTTATTG
1 TTTATGTTTTAGGG
8650402 TTTATGTTTTAGGG
1 TTTATGTTTTAGGG
***
8650416 TTTA-GTATTTATAT
1 TTTATGT-TTTAGGG
* *
8650430 TTTAGGTTCTAGGG
1 TTTATGTTTTAGGG
8650444 TTTATGTTTT
1 TTTATGTTTT
8650454 TGTGTTTTTA
Statistics
Matches: 58, Mismatches: 19, Indels: 9
0.67 0.22 0.10
Matches are distributed among these distances:
13 6 0.10
14 35 0.60
15 13 0.22
16 4 0.07
ACGTcount: A:0.16, C:0.01, G:0.22, T:0.61
Consensus pattern (14 bp):
TTTATGTTTTAGGG
Found at i:8650419 original size:21 final size:20
Alignment explanation
Indices: 8650395--8650453 Score: 64
Period size: 21 Copynumber: 2.9 Consensus size: 20
8650385 GATTTTATTT
*
8650395 TTTATTGTTTATGTTTTAGGG
1 TTTAGTGTTTATGTTTTA-GG
* *
8650416 TTTAGTATTTATATTTTAGG
1 TTTAGTGTTTATGTTTTAGG
*
8650436 TTCTAGGGTTTATGTTTT
1 TT-TAGTGTTTATGTTTT
8650454 TGTGTTTTTA
Statistics
Matches: 31, Mismatches: 6, Indels: 2
0.79 0.15 0.05
Matches are distributed among these distances:
20 4 0.13
21 27 0.87
ACGTcount: A:0.17, C:0.02, G:0.20, T:0.61
Consensus pattern (20 bp):
TTTAGTGTTTATGTTTTAGG
Found at i:8650655 original size:21 final size:22
Alignment explanation
Indices: 8650617--8650661 Score: 58
Period size: 21 Copynumber: 2.1 Consensus size: 22
8650607 TTTTAGTCTT
*
8650617 TTTAGGGTTTATATTTTA-GGG
1 TTTAGGGTTTAGATTTTATGGG
8650638 TTTAGGGTTTAGGA-TTTATGGG
1 TTTAGGGTTTA-GATTTTATGGG
8650660 TT
1 TT
8650662 ATATTTTAGG
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
21 15 0.71
22 6 0.29
ACGTcount: A:0.18, C:0.00, G:0.31, T:0.51
Consensus pattern (22 bp):
TTTAGGGTTTAGATTTTATGGG
Found at i:8650721 original size:16 final size:16
Alignment explanation
Indices: 8650696--8650727 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
8650686 GGGTTTATGG
*
8650696 TTAGGTTTTATTGTTT
1 TTAGGGTTTATTGTTT
8650712 TTAGGGTTTATTGTTT
1 TTAGGGTTTATTGTTT
8650728 GTGTTTTTAG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.12, C:0.00, G:0.22, T:0.66
Consensus pattern (16 bp):
TTAGGGTTTATTGTTT
Done.