Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr09 ID=Chr09-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 70713020
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 1142373 characters in sequence are not A, C, G, or T
File 181 of 226
Found at i:58016930 original size:62 final size:59
Alignment explanation
Indices: 58016850--58016966 Score: 180
Period size: 62 Copynumber: 1.9 Consensus size: 59
58016840 AATGGTTATC
* *
58016850 TTAATATTAAATTAAATTTAATGTTTATCTTATAGATAAATATTCTATTAATTTAATAAGAT
1 TTAATATTAAATTAAATTTAATATTTATC-T-T-GATAAATATTATATTAATTTAATAAGAT
*
58016912 TTAATATTAAATTTAATTTAATATTTATCTTGATAAATATTATATTAATTTAATA
1 TTAATATTAAATTAAATTTAATATTTATCTTGATAAATATTATATTAATTTAATA
58016967 TTAAAGTGAT
Statistics
Matches: 52, Mismatches: 3, Indels: 3
0.90 0.05 0.05
Matches are distributed among these distances:
59 23 0.44
60 1 0.02
61 1 0.02
62 27 0.52
ACGTcount: A:0.44, C:0.03, G:0.03, T:0.50
Consensus pattern (59 bp):
TTAATATTAAATTAAATTTAATATTTATCTTGATAAATATTATATTAATTTAATAAGAT
Found at i:58018038 original size:21 final size:21
Alignment explanation
Indices: 58018005--58018047 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
58017995 AAATAGTCTT
* *
58018005 ATTTAACAACCAAGTTCTTAA
1 ATTTAACAACCAACTTCATAA
* *
58018026 ATTTATCATCCAACTTCATAA
1 ATTTAACAACCAACTTCATAA
58018047 A
1 A
58018048 CAACTCAAAA
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.42, C:0.21, G:0.02, T:0.35
Consensus pattern (21 bp):
ATTTAACAACCAACTTCATAA
Found at i:58020200 original size:28 final size:28
Alignment explanation
Indices: 58020169--58020223 Score: 101
Period size: 28 Copynumber: 2.0 Consensus size: 28
58020159 CTTGCGTTCG
*
58020169 TGGCCCTTTTTCATCTGGTAAGTGATCA
1 TGGCCCTTTTTCATCTAGTAAGTGATCA
58020197 TGGCCCTTTTTCATCTAGTAAGTGATC
1 TGGCCCTTTTTCATCTAGTAAGTGATC
58020224 TCTTTTGGCC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.18, C:0.22, G:0.20, T:0.40
Consensus pattern (28 bp):
TGGCCCTTTTTCATCTAGTAAGTGATCA
Found at i:58022396 original size:6 final size:6
Alignment explanation
Indices: 58022385--58022414 Score: 51
Period size: 6 Copynumber: 5.0 Consensus size: 6
58022375 CAAATTGTTT
*
58022385 AAACTG AAACTG AAACTA AAACTG AAACTG
1 AAACTG AAACTG AAACTG AAACTG AAACTG
58022415 TCTTTGATAG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.53, C:0.17, G:0.13, T:0.17
Consensus pattern (6 bp):
AAACTG
Found at i:58028711 original size:18 final size:17
Alignment explanation
Indices: 58028685--58028732 Score: 60
Period size: 18 Copynumber: 2.7 Consensus size: 17
58028675 ACAATAAGAA
58028685 AACGTTTTGAAATTGAAT
1 AACGTTTTGAAA-TGAAT
*
58028703 AACGATTTGTAAATGAAT
1 AACGTTTTG-AAATGAAT
*
58028721 AATGTTTTGAAA
1 AACGTTTTGAAA
58028733 ACAAACGACA
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
17 3 0.12
18 20 0.77
19 3 0.12
ACGTcount: A:0.42, C:0.04, G:0.17, T:0.38
Consensus pattern (17 bp):
AACGTTTTGAAATGAAT
Found at i:58031063 original size:21 final size:22
Alignment explanation
Indices: 58031019--58031069 Score: 59
Period size: 21 Copynumber: 2.4 Consensus size: 22
58031009 TTGTTATAAC
*
58031019 TTTATAAAACACACAAATTATT
1 TTTATAATACACACAAATTATT
* *
58031041 TTTATAATACA-AGAAATTGTT
1 TTTATAATACACACAAATTATT
*
58031062 TTCATAAT
1 TTTATAAT
58031070 CATCCCAAAC
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
21 15 0.60
22 10 0.40
ACGTcount: A:0.45, C:0.10, G:0.04, T:0.41
Consensus pattern (22 bp):
TTTATAATACACACAAATTATT
Found at i:58031680 original size:23 final size:20
Alignment explanation
Indices: 58031619--58031680 Score: 61
Period size: 21 Copynumber: 2.9 Consensus size: 20
58031609 AAATGATAAA
*
58031619 AAATAAAAATAAATAAAAGTT
1 AAATAAAAATATA-AAAAGTT
*
58031640 AAATAAAAATATTAAAAATTT
1 AAATAAAAATA-TAAAAAGTT
58031661 ATAATAAAAAATATAGAAAA
1 A-AAT-AAAAATATA-AAAA
58031681 ATATTTACAA
Statistics
Matches: 35, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
21 18 0.51
22 6 0.17
23 11 0.31
ACGTcount: A:0.71, C:0.00, G:0.03, T:0.26
Consensus pattern (20 bp):
AAATAAAAATATAAAAAGTT
Found at i:58032304 original size:18 final size:18
Alignment explanation
Indices: 58032300--58032352 Score: 63
Period size: 19 Copynumber: 2.9 Consensus size: 18
58032290 AATTTTATAT
58032300 TTTTATATTTTTAT-AAA
1 TTTTATATTTTTATAAAA
* *
58032317 TTTTATAAATTTTATAAAT
1 TTTTAT-ATTTTTATAAAA
58032336 TTTTACTATTTTTATAA
1 TTTTA-TATTTTTATAA
58032353 TTTTTTTTCT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
17 6 0.20
18 7 0.23
19 16 0.53
20 1 0.03
ACGTcount: A:0.36, C:0.02, G:0.00, T:0.62
Consensus pattern (18 bp):
TTTTATATTTTTATAAAA
Found at i:58032315 original size:26 final size:26
Alignment explanation
Indices: 58032283--58032332 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
58032273 ATCTTACGTC
*
58032283 TTTATAAAATTTTAT-ATTTTTATATT
1 TTTAT-AAATTTTATAAATTTTATATT
58032309 TTTATAAATTTTATAAATTTTATA
1 TTTATAAATTTTATAAATTTTATA
58032333 AATTTTTACT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 9 0.41
26 13 0.59
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (26 bp):
TTTATAAATTTTATAAATTTTATATT
Found at i:58032355 original size:9 final size:9
Alignment explanation
Indices: 58032220--58032357 Score: 77
Period size: 9 Copynumber: 15.0 Consensus size: 9
58032210 ATGAGATATA
58032220 ATAAGTTTTT
1 ATAA-TTTTT
58032230 ATAATTTATT
1 ATAATTT-TT
*
58032240 ATGAATTTAT
1 AT-AATTTTT
**
58032250 ATTTTTTTT
1 ATAATTTTT
* *
58032259 ACATTTTTT
1 ATAATTTTT
*
58032268 ATAATATCTT
1 ATAAT-TTTT
** *
58032278 A-CGTCTTT
1 ATAATTTTT
*
58032286 ATAAAATTTT
1 AT-AATTTTT
58032296 AT-ATTTTT
1 ATAATTTTT
58032304 AT-ATTTTT
1 ATAATTTTT
*
58032312 ATAAATTTT
1 ATAATTTTT
*
58032321 ATAAATTTT
1 ATAATTTTT
58032330 ATAAATTTTT
1 AT-AATTTTT
58032340 ACT-ATTTTT
1 A-TAATTTTT
58032349 ATAATTTTT
1 ATAATTTTT
58032358 TTTCTAATTT
Statistics
Matches: 99, Mismatches: 20, Indels: 19
0.72 0.14 0.14
Matches are distributed among these distances:
8 19 0.19
9 47 0.47
10 27 0.27
11 6 0.06
ACGTcount: A:0.33, C:0.04, G:0.02, T:0.62
Consensus pattern (9 bp):
ATAATTTTT
Found at i:58032400 original size:30 final size:29
Alignment explanation
Indices: 58032366--58032428 Score: 76
Period size: 30 Copynumber: 2.1 Consensus size: 29
58032356 TTTTTCTAAT
58032366 TTTTAATAACTTT-GTAATATTTT-TATTATA
1 TTTTAATAA-TTTAGTAAT-TTTTAT-TTATA
58032396 TTTTAATAATTTCAGTAATTTTTATTTATA
1 TTTTAATAATTT-AGTAATTTTTATTTATA
58032426 TTT
1 TTT
58032429 ATTTATTTAT
Statistics
Matches: 30, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
29 3 0.10
30 21 0.70
31 6 0.20
ACGTcount: A:0.32, C:0.03, G:0.03, T:0.62
Consensus pattern (29 bp):
TTTTAATAATTTAGTAATTTTTATTTATA
Found at i:58035195 original size:14 final size:13
Alignment explanation
Indices: 58035159--58035196 Score: 51
Period size: 12 Copynumber: 2.9 Consensus size: 13
58035149 TCTATCACCA
*
58035159 AATTGTTAACTTT
1 AATTGTTAACATT
58035172 AATT-TTAACATT
1 AATTGTTAACATT
58035184 AATTGATTAACAT
1 AATTG-TTAACAT
58035197 ATACAGTCCC
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
12 11 0.50
13 4 0.18
14 7 0.32
ACGTcount: A:0.39, C:0.08, G:0.05, T:0.47
Consensus pattern (13 bp):
AATTGTTAACATT
Found at i:58041230 original size:25 final size:25
Alignment explanation
Indices: 58041206--58041304 Score: 144
Period size: 25 Copynumber: 4.0 Consensus size: 25
58041196 AGATCGGTAT
* *
58041206 GCTCTCACGAGCTATAAACCAGTAT
1 GCTCTCACGAGCTATAAATCAGTAC
*
58041231 GCTCTCACGAGCTATAAATCGGTAC
1 GCTCTCACGAGCTATAAATCAGTAC
**
58041256 GCTCTCACGAGCTATAAATTGGTAC
1 GCTCTCACGAGCTATAAATCAGTAC
*
58041281 GCTCTCACGAGCCATAAATCAGTA
1 GCTCTCACGAGCTATAAATCAGTA
58041305 ACCCTAATTA
Statistics
Matches: 67, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 67 1.00
ACGTcount: A:0.30, C:0.27, G:0.18, T:0.24
Consensus pattern (25 bp):
GCTCTCACGAGCTATAAATCAGTAC
Found at i:58046750 original size:23 final size:23
Alignment explanation
Indices: 58046724--58046822 Score: 153
Period size: 23 Copynumber: 4.3 Consensus size: 23
58046714 AGTGTTATTG
58046724 ATCAGTGGTAGCTACGGCTACAT
1 ATCAGTGGTAGCTACGGCTACAT
*
58046747 ATCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTACGGCTACAT
* *
58046770 TTCAGTGGTAGCTATGGCTACAT
1 ATCAGTGGTAGCTACGGCTACAT
* *
58046793 ATCAGTGGTAGCTTCGGCTGCAT
1 ATCAGTGGTAGCTACGGCTACAT
58046816 ATCAGTG
1 ATCAGTG
58046823 TGGCACTTAT
Statistics
Matches: 68, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
23 68 1.00
ACGTcount: A:0.22, C:0.20, G:0.27, T:0.30
Consensus pattern (23 bp):
ATCAGTGGTAGCTACGGCTACAT
Found at i:58046792 original size:46 final size:46
Alignment explanation
Indices: 58046724--58046822 Score: 171
Period size: 46 Copynumber: 2.2 Consensus size: 46
58046714 AGTGTTATTG
58046724 ATCAGTGGTAGCTACGGCTACATATCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTACGGCTACATATCAGTGGTAGCTTCGGCTACAT
* * *
58046770 TTCAGTGGTAGCTATGGCTACATATCAGTGGTAGCTTCGGCTGCAT
1 ATCAGTGGTAGCTACGGCTACATATCAGTGGTAGCTTCGGCTACAT
58046816 ATCAGTG
1 ATCAGTG
58046823 TGGCACTTAT
Statistics
Matches: 49, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
46 49 1.00
ACGTcount: A:0.22, C:0.20, G:0.27, T:0.30
Consensus pattern (46 bp):
ATCAGTGGTAGCTACGGCTACATATCAGTGGTAGCTTCGGCTACAT
Found at i:58050294 original size:20 final size:20
Alignment explanation
Indices: 58050266--58050364 Score: 69
Period size: 20 Copynumber: 5.0 Consensus size: 20
58050256 TAGATGCATA
*
58050266 ACAGAGGCACCGAAGTGCAG
1 ACAGGGGCACCGAAGTGCAG
* *
58050286 ACAGGGGCA-CAAATGTGCAA
1 ACAGGGGCACCGAA-GTGCAG
58050306 ACAGGGGCACCGTAA-TGC-G
1 ACAGGGGCACCG-AAGTGCAG
* * * * *
58050325 AATAGGGACACCAAAGTGTAT
1 -ACAGGGGCACCGAAGTGCAG
*
58050346 ACAGGGGCATCGAAGTGCA
1 ACAGGGGCACCGAAGTGCA
58050365 AGTCCCGTAC
Statistics
Matches: 58, Mismatches: 15, Indels: 12
0.68 0.18 0.14
Matches are distributed among these distances:
19 5 0.09
20 50 0.86
21 1 0.02
22 2 0.03
ACGTcount: A:0.35, C:0.21, G:0.32, T:0.11
Consensus pattern (20 bp):
ACAGGGGCACCGAAGTGCAG
Found at i:58052776 original size:20 final size:20
Alignment explanation
Indices: 58052751--58052804 Score: 81
Period size: 20 Copynumber: 2.7 Consensus size: 20
58052741 TATTTAAGCT
58052751 AAAGTAAGTAAATGAAATGA
1 AAAGTAAGTAAATGAAATGA
* *
58052771 AAAGTAAGTAAATGCAATGG
1 AAAGTAAGTAAATGAAATGA
*
58052791 CAAGTAAGTAAATG
1 AAAGTAAGTAAATG
58052805 GAAAGATTCA
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.54, C:0.04, G:0.22, T:0.20
Consensus pattern (20 bp):
AAAGTAAGTAAATGAAATGA
Found at i:58056385 original size:20 final size:21
Alignment explanation
Indices: 58056339--58056393 Score: 76
Period size: 20 Copynumber: 2.7 Consensus size: 21
58056329 TATTTAAACT
*
58056339 AAAGTATGTAAATGCAATTGA
1 AAAGTAAGTAAATGCAATTGA
* *
58056360 AAAGTAAGTAAATGTAA-TGG
1 AAAGTAAGTAAATGCAATTGA
58056380 AAAGTAAGTAAATG
1 AAAGTAAGTAAATG
58056394 GAAGGGTTCA
Statistics
Matches: 31, Mismatches: 3, Indels: 1
0.89 0.09 0.03
Matches are distributed among these distances:
20 16 0.52
21 15 0.48
ACGTcount: A:0.51, C:0.02, G:0.22, T:0.25
Consensus pattern (21 bp):
AAAGTAAGTAAATGCAATTGA
Found at i:58091708 original size:51 final size:52
Alignment explanation
Indices: 58091643--58091865 Score: 188
Period size: 51 Copynumber: 4.4 Consensus size: 52
58091633 GCACGGACTG
* * ** * *
58091643 TGTGTAGGCAACTATGTGAAAGTGAAAGTGAT-GGTCACGTGTGTAATACTA
1 TGTGCAGGCTACTATGTGAAACAGAAAGTGATAGGTCACATGTGTAGTACTA
* * * *
58091694 TGTGTAGGCTACTATGTGTACCAG-AA-TGATAGGTCGCATGTGTAGTACTA
1 TGTGCAGGCTACTATGTGAAACAGAAAGTGATAGGTCACATGTGTAGTACTA
* * * * * * *
58091744 TGTGCAGGCTACTATGCGCACCAGATAGCT--TCGATCACGTGTGTAGTACTA
1 TGTGCAGGCTACTATGTGAAACAGAAAG-TGATAGGTCACATGTGTAGTACTA
* *** * *
58091795 TGTGCAGGCTACTATGTGTATTGGATAGTGAT-GGTCACATGTGCAGTACTA
1 TGTGCAGGCTACTATGTGAAACAGAAAGTGATAGGTCACATGTGTAGTACTA
58091846 TGTGCAGGCTACTATGTGAA
1 TGTGCAGGCTACTATGTGAA
58091866 CCGGTATCAT
Statistics
Matches: 141, Mismatches: 25, Indels: 12
0.79 0.14 0.07
Matches are distributed among these distances:
49 4 0.03
50 40 0.28
51 95 0.67
52 1 0.01
53 1 0.01
ACGTcount: A:0.26, C:0.15, G:0.28, T:0.30
Consensus pattern (52 bp):
TGTGCAGGCTACTATGTGAAACAGAAAGTGATAGGTCACATGTGTAGTACTA
Found at i:58091794 original size:101 final size:102
Alignment explanation
Indices: 58091677--58091861 Score: 284
Period size: 101 Copynumber: 1.8 Consensus size: 102
58091667 AAAGTGATGG
* * *
58091677 TCACGTGTGTAATACTATGTGTAGGCTACTATGTGTACCAGA-A-TGATAGGTCGCATGTGTAGT
1 TCACGTGTGTAATACTATGTGCAGGCTACTATGTGTACCAGATAGTGAT-GGTCACATGTGCAGT
58091740 ACTATGTGCAGGCTACTATGCGCACCAGATAGCTTCGA
65 ACTATGTGCAGGCTACTATGCGCACCAGATAGCTTCGA
* ***
58091778 TCACGTGTGTAGTACTATGTGCAGGCTACTATGTGTATTGGATAGTGATGGTCACATGTGCAGTA
1 TCACGTGTGTAATACTATGTGCAGGCTACTATGTGTACCAGATAGTGATGGTCACATGTGCAGTA
58091843 CTATGTGCAGGCTACTATG
66 CTATGTGCAGGCTACTATG
58091862 TGAACCGGTA
Statistics
Matches: 75, Mismatches: 7, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
101 37 0.49
102 34 0.45
103 4 0.05
ACGTcount: A:0.24, C:0.17, G:0.27, T:0.31
Consensus pattern (102 bp):
TCACGTGTGTAATACTATGTGCAGGCTACTATGTGTACCAGATAGTGATGGTCACATGTGCAGTA
CTATGTGCAGGCTACTATGCGCACCAGATAGCTTCGA
Found at i:58096698 original size:45 final size:45
Alignment explanation
Indices: 58096613--58096732 Score: 141
Period size: 45 Copynumber: 2.7 Consensus size: 45
58096603 TACTAAGTAT
* ** * ** *
58096613 CATTGATTATAAAGGTGGTTGCTATGTGCCGATTCCACCGGGTAC
1 CATTGATTATAAAGGTGGTTGCTATGTGCTGACACAACCGGAAAA
58096658 CATTGATTATAAAGGTGGTTGCTATGTGCTGACACAACCGGAAAA
1 CATTGATTATAAAGGTGGTTGCTATGTGCTGACACAACCGGAAAA
* ** *
58096703 CACTGAAAATAAAGGTGGTTGCTATATGCT
1 CATTGATTATAAAGGTGGTTGCTATGTGCT
58096733 AATGCCACCG
Statistics
Matches: 64, Mismatches: 11, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
45 64 1.00
ACGTcount: A:0.29, C:0.17, G:0.25, T:0.29
Consensus pattern (45 bp):
CATTGATTATAAAGGTGGTTGCTATGTGCTGACACAACCGGAAAA
Found at i:58101571 original size:45 final size:45
Alignment explanation
Indices: 58101507--58101724 Score: 253
Period size: 45 Copynumber: 4.9 Consensus size: 45
58101497 TACTGAGTAT
* *
58101507 CATTGATTATAAAGGTGGTTGCTATGTACTGATTCCACCGGGTAC
1 CATTGATTATAAAGGTGGTTGCTATGTGCTGATTCCACCGGATAC
*
58101552 CATTGATTATAAAGGTGGTTGCTATGTGCTGATTCCACCGGGTAC
1 CATTGATTATAAAGGTGGTTGCTATGTGCTGATTCCACCGGATAC
* * * *
58101597 CATTGACTATAAAGGTGGTTGCTATGTGCTGACTCCACCAGAAAC
1 CATTGATTATAAAGGTGGTTGCTATGTGCTGATTCCACCGGATAC
* ** * * * * *
58101642 CACTGAAAATAAAGGTGGTTGCTGTAG-GCTAATTTCACCGAATAT
1 CATTGATTATAAAGGTGGTTGCTAT-GTGCTGATTCCACCGGATAC
* *
58101687 AATTGATTATAAGGGTGG-TGCTATGTGCTGA-TCCACCG
1 CATTGATTATAAAGGTGGTTGCTATGTGCTGATTCCACCG
58101725 TGTAACCGTT
Statistics
Matches: 146, Mismatches: 25, Indels: 6
0.82 0.14 0.03
Matches are distributed among these distances:
43 7 0.05
44 9 0.06
45 129 0.88
46 1 0.01
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.31
Consensus pattern (45 bp):
CATTGATTATAAAGGTGGTTGCTATGTGCTGATTCCACCGGATAC
Found at i:58104785 original size:13 final size:14
Alignment explanation
Indices: 58104748--58104793 Score: 51
Period size: 13 Copynumber: 3.3 Consensus size: 14
58104738 AAAGGCTAAG
*
58104748 TAATGATAATATATA
1 TAATGAAAATA-ATA
58104763 TAAT-AAAATAATA
1 TAATGAAAATAATA
58104776 -AATGAAAATAATA
1 TAATGAAAATAATA
58104789 GTAAT
1 -TAAT
58104794 AACTAAAAGA
Statistics
Matches: 27, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
12 3 0.11
13 12 0.44
14 5 0.19
15 7 0.26
ACGTcount: A:0.61, C:0.00, G:0.07, T:0.33
Consensus pattern (14 bp):
TAATGAAAATAATA
Found at i:58104893 original size:18 final size:18
Alignment explanation
Indices: 58104860--58104916 Score: 69
Period size: 18 Copynumber: 3.2 Consensus size: 18
58104850 TAGAACTAAC
*
58104860 AATAAGAATAAGAATAAA
1 AATAAGAATAATAATAAA
* *
58104878 AATAATAATGATAATAAA
1 AATAAGAATAATAATAAA
* *
58104896 ACTAAGAATAATAAGAAA
1 AATAAGAATAATAATAAA
58104914 AAT
1 AAT
58104917 TAAACAACAA
Statistics
Matches: 31, Mismatches: 8, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
18 31 1.00
ACGTcount: A:0.68, C:0.02, G:0.09, T:0.21
Consensus pattern (18 bp):
AATAAGAATAATAATAAA
Found at i:58112407 original size:14 final size:15
Alignment explanation
Indices: 58112385--58112413 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
58112375 ATAGACCTTC
58112385 TATCATTTGCCATAG
1 TATCATTTGCCATAG
58112400 TATC-TTTGCCATAG
1 TATCATTTGCCATAG
58112414 CATTCTTAAG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 10 0.71
15 4 0.29
ACGTcount: A:0.24, C:0.21, G:0.14, T:0.41
Consensus pattern (15 bp):
TATCATTTGCCATAG
Found at i:58114011 original size:16 final size:17
Alignment explanation
Indices: 58113980--58114012 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
58113970 TATAATCCAG
58113980 CATATATCAAAACATAT
1 CATATATCAAAACATAT
*
58113997 CATATA-CAGAACATAT
1 CATATATCAAAACATAT
58114013 AACAAAACAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 9 0.60
17 6 0.40
ACGTcount: A:0.52, C:0.18, G:0.03, T:0.27
Consensus pattern (17 bp):
CATATATCAAAACATAT
Found at i:58116750 original size:13 final size:13
Alignment explanation
Indices: 58116732--58116758 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
58116722 CACAAACGAT
58116732 AAAATTTTCACAC
1 AAAATTTTCACAC
58116745 AAAATTTTCACAC
1 AAAATTTTCACAC
58116758 A
1 A
58116759 TATCACATAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.48, C:0.22, G:0.00, T:0.30
Consensus pattern (13 bp):
AAAATTTTCACAC
Found at i:58117479 original size:54 final size:54
Alignment explanation
Indices: 58117346--58117479 Score: 128
Period size: 54 Copynumber: 2.5 Consensus size: 54
58117336 TGGGTTGTCA
*
58117346 TGCTGATTTACGAA-CACGACCTTCTACTTTCGAGATTTTATGAATCTCACAGTC
1 TGCTGATTTAC-AATCACGACCTTCTACTTTCGAGATTTTACGAATCTCACAGTC
** * * ** * ** *
58117400 CACTGATTTACTATCACAATTTTCTACTTTTGAGATTTTACGAATCTTC-TGGTT
1 TGCTGATTTACAATCACGACCTTCTACTTTCGAGATTTTACGAATC-TCACAGTC
*
58117454 TGCTGATTTACAATTACGACCTTCTA
1 TGCTGATTTACAATCACGACCTTCTA
58117480 TATACAAGAT
Statistics
Matches: 60, Mismatches: 18, Indels: 4
0.73 0.22 0.05
Matches are distributed among these distances:
53 1 0.02
54 57 0.95
55 2 0.03
ACGTcount: A:0.25, C:0.22, G:0.13, T:0.40
Consensus pattern (54 bp):
TGCTGATTTACAATCACGACCTTCTACTTTCGAGATTTTACGAATCTCACAGTC
Found at i:58117602 original size:24 final size:24
Alignment explanation
Indices: 58117544--58117610 Score: 80
Period size: 24 Copynumber: 2.8 Consensus size: 24
58117534 TGTTTGGAAA
* *
58117544 ATTTATGCAAATACAATTCAAAAC
1 ATTTCTGCAAATACAGTTCAAAAC
* ** *
58117568 ATGTCAACAAATATAGTTCAAAAC
1 ATTTCTGCAAATACAGTTCAAAAC
58117592 ATTTCTGCAAATACAGTTC
1 ATTTCTGCAAATACAGTTC
58117611 GCAATATACT
Statistics
Matches: 33, Mismatches: 10, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
24 33 1.00
ACGTcount: A:0.45, C:0.18, G:0.07, T:0.30
Consensus pattern (24 bp):
ATTTCTGCAAATACAGTTCAAAAC
Found at i:58119766 original size:13 final size:13
Alignment explanation
Indices: 58119748--58119772 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
58119738 TTGAATAAAA
58119748 GGTAAAAGTTTAG
1 GGTAAAAGTTTAG
58119761 GGTAAAAGTTTA
1 GGTAAAAGTTTA
58119773 AAATGTTGAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.00, G:0.28, T:0.32
Consensus pattern (13 bp):
GGTAAAAGTTTAG
Found at i:58123134 original size:206 final size:206
Alignment explanation
Indices: 58122784--58123170 Score: 659
Period size: 206 Copynumber: 1.9 Consensus size: 206
58122774 AATTTTGATG
* * *
58122784 AATTAGTGACTAATTGAGGTGTAAGGACTAAATTGTAAAAGTGGTGAAAGTTAATTACTATGAAA
1 AATTAGTGACTAATTGAGGTGAAAGAACTAAATTGTAAAAGTGGTAAAAGTTAATTACTATGAAA
58122849 TTTTAATTAATTGAAGGACCAATTGAGAAATTGAACCACTAATATATTATCAAATGATGGCAGAT
66 TTTTAATTAATTGAAGGACCAATTGAGAAATTGAACCACTAATATATTATCAAATGATGGCAGAT
* *
58122914 ATCAAGTGTAATCCACTAACAAATGTTAATCTTGCTTAAGGTTTAATAATTGAATTTTGGATAAG
131 ATCAACTATAATCCACTAACAAATGTTAATCTTGCTTAAGGTTTAATAATTGAATTTTGGATAAG
58122979 TATTTTTGCTA
196 TATTTTTGCTA
58122990 AATTAGTGACTAATTGAGGTGAAAGAACTAAATTGTAAAAGTGGTAAAAGTTAATTACTATGAAA
1 AATTAGTGACTAATTGAGGTGAAAGAACTAAATTGTAAAAGTGGTAAAAGTTAATTACTATGAAA
* * ** *
58123055 TTTTAATTAATTGAAGGACCAATTGAGCAATTGAATCACTAATATATTATCAAACTG-TGGTGGT
66 TTTTAATTAATTGAAGGACCAATTGAGAAATTGAACCACTAATATATTATCAAA-TGATGGCAGA
*
58123119 TATTAACTATAATCCACTAACAAATGTTAATCTTGCTTAAGGTTTAATAATT
130 TATCAACTATAATCCACTAACAAATGTTAATCTTGCTTAAGGTTTAATAATT
58123171 AAAATTAATT
Statistics
Matches: 169, Mismatches: 11, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
206 167 0.99
207 2 0.01
ACGTcount: A:0.40, C:0.09, G:0.17, T:0.35
Consensus pattern (206 bp):
AATTAGTGACTAATTGAGGTGAAAGAACTAAATTGTAAAAGTGGTAAAAGTTAATTACTATGAAA
TTTTAATTAATTGAAGGACCAATTGAGAAATTGAACCACTAATATATTATCAAATGATGGCAGAT
ATCAACTATAATCCACTAACAAATGTTAATCTTGCTTAAGGTTTAATAATTGAATTTTGGATAAG
TATTTTTGCTA
Found at i:58123181 original size:10 final size:10
Alignment explanation
Indices: 58123166--58123213 Score: 53
Period size: 10 Copynumber: 4.8 Consensus size: 10
58123156 TAAGGTTTAA
58123166 TAATTAAAAT
1 TAATTAAAAT
*
58123176 TAATT-AAGT
1 TAATTAAAAT
*
58123185 TAATTAATTAT
1 TAATTAA-AAT
58123196 TAATTAAAAT
1 TAATTAAAAT
*
58123206 TAAATAAA
1 TAATTAAA
58123214 GTATAAAAGG
Statistics
Matches: 31, Mismatches: 5, Indels: 4
0.77 0.12 0.10
Matches are distributed among these distances:
9 8 0.26
10 15 0.48
11 8 0.26
ACGTcount: A:0.56, C:0.00, G:0.02, T:0.42
Consensus pattern (10 bp):
TAATTAAAAT
Found at i:58129606 original size:9 final size:9
Alignment explanation
Indices: 58129592--58129650 Score: 91
Period size: 9 Copynumber: 6.6 Consensus size: 9
58129582 TATTTTTTGA
*
58129592 TAATTCGGT
1 TAATTCGGG
*
58129601 TAATTCGGT
1 TAATTCGGG
58129610 TAATTCGGG
1 TAATTCGGG
*
58129619 TAATTCGGA
1 TAATTCGGG
58129628 TAATTCGGG
1 TAATTCGGG
58129637 TAATTCGGG
1 TAATTCGGG
58129646 TAATT
1 TAATT
58129651 TTTAACCAAA
Statistics
Matches: 47, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
9 47 1.00
ACGTcount: A:0.25, C:0.10, G:0.25, T:0.39
Consensus pattern (9 bp):
TAATTCGGG
Found at i:58137465 original size:66 final size:66
Alignment explanation
Indices: 58137384--58137517 Score: 223
Period size: 66 Copynumber: 2.0 Consensus size: 66
58137374 GAACATGGAG
* * * **
58137384 TAAAATTTTGAGTTTCATTTATTAAATAAATTGAATATAAATATTCCTTGTTAACATGTATTTAA
1 TAAAATTTTGAGTTTCATTTATTAAATAAATTGAACATAAATATTCCTCGTAAACATACATTTAA
58137449 T
66 T
58137450 TAAAATTTTGAGTTTCATTTATTAAATAAATTGAACATAAATATTCCTCGTAAACATACATTTAA
1 TAAAATTTTGAGTTTCATTTATTAAATAAATTGAACATAAATATTCCTCGTAAACATACATTTAA
58137515 T
66 T
58137516 TA
1 TA
58137518 TATATTCATG
Statistics
Matches: 63, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
66 63 1.00
ACGTcount: A:0.41, C:0.08, G:0.07, T:0.44
Consensus pattern (66 bp):
TAAAATTTTGAGTTTCATTTATTAAATAAATTGAACATAAATATTCCTCGTAAACATACATTTAA
T
Found at i:58137740 original size:14 final size:14
Alignment explanation
Indices: 58137721--58137748 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
58137711 GTGAAGAAGA
58137721 TTATTAATTAAGCT
1 TTATTAATTAAGCT
58137735 TTATTAATTAAGCT
1 TTATTAATTAAGCT
58137749 CATCATACAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.36, C:0.07, G:0.07, T:0.50
Consensus pattern (14 bp):
TTATTAATTAAGCT
Found at i:58139115 original size:2 final size:2
Alignment explanation
Indices: 58139108--58139132 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
58139098 AACAAAAAGA
58139108 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
58139133 AAGAAGTGAG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:58140334 original size:21 final size:19
Alignment explanation
Indices: 58140296--58140334 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 19
58140286 TGTAAATTTA
*
58140296 ATTTTATTTATTAAATATT
1 ATTTTATTTATAAAATATT
58140315 ATTTTAATTTAATAAAATAT
1 ATTTT-ATTT-ATAAAATAT
58140335 GATTAATAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 5 0.29
20 4 0.24
21 8 0.47
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (19 bp):
ATTTTATTTATAAAATATT
Found at i:58144164 original size:18 final size:19
Alignment explanation
Indices: 58144123--58144164 Score: 54
Period size: 18 Copynumber: 2.3 Consensus size: 19
58144113 TTTATTCATA
58144123 ACACATCAAATATTAGCAT
1 ACACATCAAATATTAGCAT
58144142 A-ACATCAACAT-TT-GCAT
1 ACACATCAA-ATATTAGCAT
58144159 ACACAT
1 ACACAT
58144165 ATTGAAATTC
Statistics
Matches: 21, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
17 5 0.24
18 13 0.62
19 3 0.14
ACGTcount: A:0.45, C:0.24, G:0.05, T:0.26
Consensus pattern (19 bp):
ACACATCAAATATTAGCAT
Found at i:58149145 original size:29 final size:29
Alignment explanation
Indices: 58149072--58149157 Score: 111
Period size: 29 Copynumber: 3.0 Consensus size: 29
58149062 AAGCTCATTG
* * *
58149072 AATATGAAAAGGGATAG-TTACGACCATTA
1 AATATGAAAAGGGATGGCTT-TGACCATCA
58149101 AATATGAAAAGGGATGGCTTTGACCATCA
1 AATATGAAAAGGGATGGCTTTGACCATCA
* *
58149130 AATATGGAAAGGGATGGTTTTGACCATC
1 AATATGAAAAGGGATGGCTTTGACCATC
58149158 GTTTAGCACA
Statistics
Matches: 51, Mismatches: 5, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
29 49 0.96
30 2 0.04
ACGTcount: A:0.38, C:0.12, G:0.24, T:0.26
Consensus pattern (29 bp):
AATATGAAAAGGGATGGCTTTGACCATCA
Found at i:58154457 original size:136 final size:136
Alignment explanation
Indices: 58154211--58154582 Score: 464
Period size: 136 Copynumber: 2.7 Consensus size: 136
58154201 CGGGTGTTGC
* * * * * *
58154211 TCTTGAATGTCCTAGCAGTGGCTGAGTTCTGGCATTTATTGCGGATACTTGATAGCTTGTGGAGC
1 TCTTGAATGTCCTACCAGTGGCTGAGTTTTGGCATTTGTTGCGGATACTAGACAGCTTGTGGAGT
* * * * *
58154276 AGCACCATGTAGCTACATTCCGA-CC-TACGACTTGTGTGAGTAGACCCAGGTTACCATATTTCC
66 AGCACCGTGTAGCTACGTTCCGACCCATA-G-CTTGTGTGAGCAGACCCAAGTTACAATATTT-C
58154339 GA-TGCTGG
128 GAGTGCTGG
*
58154347 TCTTGAATGTCCTACCAGTGGTTGAGTTTTGGCATTTGTTGCGGATACTAGACAGCTTGTGGAGT
1 TCTTGAATGTCCTACCAGTGGCTGAGTTTTGGCATTTGTTGCGGATACTAGACAGCTTGTGGAGT
* * *
58154412 GGCACTGTGTAGCTACGTTCCAACCCATAGCTTGTGTGAGCAGACCCAAGTTACAATATTTCGAG
66 AGCACCGTGTAGCTACGTTCCGACCCATAGCTTGTGTGAGCAGACCCAAGTTACAATATTTCGAG
58154477 TGCTGG
131 TGCTGG
* ** * * *
58154483 TCTTGAATGTCCTACC-GATAGCTGAGTTTCAGCATTTGTTGTGGATACTAGACAACTTGTGAAG
1 TCTTGAATGTCCTACCAG-TGGCTGAGTTTTGGCATTTGTTGCGGATACTAGACAGCTTGTGGAG
* * *
58154547 TAGCACCGTGTAACTACGTTCCGACCAACAGCTTGT
65 TAGCACCGTGTAGCTACGTTCCGACCCATAGCTTGT
58154583 CTGTGTAGGC
Statistics
Matches: 204, Mismatches: 28, Indels: 8
0.85 0.12 0.03
Matches are distributed among these distances:
135 4 0.02
136 195 0.96
137 3 0.01
138 2 0.01
ACGTcount: A:0.22, C:0.21, G:0.25, T:0.31
Consensus pattern (136 bp):
TCTTGAATGTCCTACCAGTGGCTGAGTTTTGGCATTTGTTGCGGATACTAGACAGCTTGTGGAGT
AGCACCGTGTAGCTACGTTCCGACCCATAGCTTGTGTGAGCAGACCCAAGTTACAATATTTCGAG
TGCTGG
Found at i:58162753 original size:23 final size:19
Alignment explanation
Indices: 58162704--58162740 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
58162694 CCCTGTTTTA
*
58162704 CCCTCTGCCTCTTCTGTTC
1 CCCTTTGCCTCTTCTGTTC
58162723 CCCTTTGCCTCTTCTGTT
1 CCCTTTGCCTCTTCTGTT
58162741 TCGCCCGATT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.00, C:0.43, G:0.11, T:0.46
Consensus pattern (19 bp):
CCCTTTGCCTCTTCTGTTC
Found at i:58162814 original size:33 final size:33
Alignment explanation
Indices: 58162777--58162844 Score: 109
Period size: 33 Copynumber: 2.1 Consensus size: 33
58162767 TTTCTTTTCT
* *
58162777 TTTCTGCCGATTTTCTCCCTCTGTTTCTCACAG
1 TTTCTGCCGATTTGCTCCCTCTATTTCTCACAG
*
58162810 TTTCTGCCGATTTGCTCCCTCTATTTCTCATAG
1 TTTCTGCCGATTTGCTCCCTCTATTTCTCACAG
58162843 TT
1 TT
58162845 CTCCACACGC
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
33 32 1.00
ACGTcount: A:0.10, C:0.31, G:0.12, T:0.47
Consensus pattern (33 bp):
TTTCTGCCGATTTGCTCCCTCTATTTCTCACAG
Found at i:58165393 original size:17 final size:16
Alignment explanation
Indices: 58165366--58165408 Score: 54
Period size: 16 Copynumber: 2.8 Consensus size: 16
58165356 ATATAAGAAC
*
58165366 ATTTTATTATTAAATT
1 ATTTTAATATTAAATT
58165382 ATATTTAATATT-AATT
1 AT-TTTAATATTAAATT
58165398 ATTTTAA-ATTA
1 ATTTTAATATTA
58165409 TATAAATTCA
Statistics
Matches: 24, Mismatches: 1, Indels: 5
0.80 0.03 0.17
Matches are distributed among these distances:
14 3 0.12
15 5 0.21
16 8 0.33
17 8 0.33
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (16 bp):
ATTTTAATATTAAATT
Found at i:58165488 original size:91 final size:91
Alignment explanation
Indices: 58165371--58165617 Score: 458
Period size: 91 Copynumber: 2.7 Consensus size: 91
58165361 AGAACATTTT
*
58165371 ATTATTAAATTATATTTAATATTAATTATTTTAAATTATATAAATTCATATAAGAAAATTTATTA
1 ATTATTAAATTATATTTAATAATAATTATTTTAAATTATATAAATTCATATAAGAAAATTTATTA
58165436 TCAAGAATTTTATGAAATTATATATC
66 TCAAGAATTTTATGAAATTATATATC
58165462 ATTATTAAATTATATTTAATAATAATTATTTTAAATTATATAAATTCATATAAGAAAATTTATTA
1 ATTATTAAATTATATTTAATAATAATTATTTTAAATTATATAAATTCATATAAGAAAATTTATTA
* *
58165527 TCATGAATTTTATGAAATTATATATT
66 TCAAGAATTTTATGAAATTATATATC
*
58165553 ATTATTAAATTATATTTAATAATAATTATTTTAAATTATACAAATTCATATAAGAAAATTTATTA
1 ATTATTAAATTATATTTAATAATAATTATTTTAAATTATATAAATTCATATAAGAAAATTTATTA
58165618 GTTATAATTA
Statistics
Matches: 152, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
91 152 1.00
ACGTcount: A:0.47, C:0.03, G:0.03, T:0.47
Consensus pattern (91 bp):
ATTATTAAATTATATTTAATAATAATTATTTTAAATTATATAAATTCATATAAGAAAATTTATTA
TCAAGAATTTTATGAAATTATATATC
Found at i:58165557 original size:101 final size:92
Alignment explanation
Indices: 58165503--58165694 Score: 185
Period size: 101 Copynumber: 2.0 Consensus size: 92
58165493 TAAATTATAT
58165503 AAATTCATATAAGAAAATTTATTA-TCATGAATT-TTATGA--AATTATATATTATTATTAAATT
1 AAATTCATATAAGAAAATTTATTAGTCAT-AATTATT-TGATTAATTATATA-TATTATTAAATT
*
58165564 ATATTTAATAATAATTATTTTAAATTATAC
63 ATATTTAATAATAATTATTTTAAATTATAT
* * *
58165594 AAATTCATATAAGAAAATTTATTAGTTATAATTATTTTAAATTTTATTAAATCATATATTTTAAT
1 AAATTCATATAAGAAAATTTATTAGTCATAATTA-TTT-GA-TTAATT--AT-ATATA--TT-AT
* * *
58165659 TAAAATATATTTAATATTAATTATTTCAAATTATAT
57 TAAATTATATTTAATAATAATTATTTTAAATTATAT
58165695 TTTATAGTAT
Statistics
Matches: 81, Mismatches: 7, Indels: 16
0.78 0.07 0.15
Matches are distributed among these distances:
91 28 0.35
92 4 0.05
93 3 0.04
96 3 0.04
98 4 0.05
99 3 0.04
100 2 0.02
101 34 0.42
ACGTcount: A:0.46, C:0.03, G:0.03, T:0.48
Consensus pattern (92 bp):
AAATTCATATAAGAAAATTTATTAGTCATAATTATTTGATTAATTATATATATTATTAAATTATA
TTTAATAATAATTATTTTAAATTATAT
Found at i:58165584 original size:47 final size:46
Alignment explanation
Indices: 58165371--58165592 Score: 157
Period size: 47 Copynumber: 4.9 Consensus size: 46
58165361 AGAACATTTT
*
58165371 ATTATTAAATTATATTTAATATTAATTA-TTT-TAAATTATATA-A
1 ATTATTAAATTATATTTAATAATAATTATTTTATAAATTATATATA
* * ** *
58165414 ATTCATATAAGA--AAATTT-ATTATCAAGAATTTTATGAAATTATATATC
1 ATT-AT-TAA-ATTATATTTAATAAT-AATTATTTTAT-AAATTATATATA
58165462 ATTATTAAATTATATTTAATAATAATTA-TTT-TAAATTATATA-A
1 ATTATTAAATTATATTTAATAATAATTATTTTATAAATTATATATA
* * * * *
58165505 ATTCATATAAGA--AAATTT-ATTATCATGAATTTTATGAAATTATATATT
1 ATT-AT-TAA-ATTATATTTAATAATAAT-TATTTTAT-AAATTATATATA
58165553 ATTATTAAATTATATTTAATAATAATTA-TTT-TAAATTATA
1 ATTATTAAATTATATTTAATAATAATTATTTTATAAATTATA
58165593 CAAATTCATA
Statistics
Matches: 137, Mismatches: 20, Indels: 43
0.69 0.10 0.22
Matches are distributed among these distances:
43 15 0.11
44 36 0.26
45 16 0.12
46 16 0.12
47 38 0.28
48 16 0.12
ACGTcount: A:0.46, C:0.02, G:0.03, T:0.49
Consensus pattern (46 bp):
ATTATTAAATTATATTTAATAATAATTATTTTATAAATTATATATA
Found at i:58165788 original size:16 final size:16
Alignment explanation
Indices: 58165749--58165808 Score: 54
Period size: 16 Copynumber: 3.8 Consensus size: 16
58165739 TTTTGATTAT
*
58165749 TAATA-ATTTTATTAAA
1 TAATATATTTTAAT-AA
* *
58165765 TTATATATTTTAATTA
1 TAATATATTTTAATAA
58165781 TAATATA-TTTAATAA
1 TAATATATTTTAATAA
58165796 TAAT-TATGTTTAA
1 TAATATAT-TTTAA
58165809 ATATGATTAA
Statistics
Matches: 36, Mismatches: 5, Indels: 6
0.77 0.11 0.13
Matches are distributed among these distances:
14 2 0.06
15 11 0.31
16 16 0.44
17 7 0.19
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.53
Consensus pattern (16 bp):
TAATATATTTTAATAA
Found at i:58165793 original size:15 final size:15
Alignment explanation
Indices: 58165758--58165799 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
58165748 TTAATAATTT
*
58165758 TATTAAATTAT-ATA
1 TATTTAATTATAATA
58165772 T-TTTAATTATAATA
1 TATTTAATTATAATA
*
58165786 TATTTAATAATAAT
1 TATTTAATTATAAT
58165800 TATGTTTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 8 0.33
14 5 0.21
15 11 0.46
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (15 bp):
TATTTAATTATAATA
Found at i:58166001 original size:39 final size:40
Alignment explanation
Indices: 58165948--58166035 Score: 108
Period size: 40 Copynumber: 2.2 Consensus size: 40
58165938 ATTGCACCTA
*
58165948 TATTTCATTCAACCAAACACA-AGA-ATACTATTACGCCTC
1 TATTCCATTCAACCAAACA-ATAGATATACTATTACGCCTC
* * * *
58165987 TATTCCATTTAACCAAACAATTGATTTGCTATTACGCCTC
1 TATTCCATTCAACCAAACAATAGATATACTATTACGCCTC
58166027 TATTCCATT
1 TATTCCATT
58166036 ACGCATCTAT
Statistics
Matches: 42, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
38 1 0.02
39 19 0.45
40 22 0.52
ACGTcount: A:0.33, C:0.26, G:0.06, T:0.35
Consensus pattern (40 bp):
TATTCCATTCAACCAAACAATAGATATACTATTACGCCTC
Found at i:58166038 original size:16 final size:16
Alignment explanation
Indices: 58166017--58166049 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
58166007 TTGATTTGCT
*
58166017 ATTACGCCTCTATTCC
1 ATTACGCATCTATTCC
58166033 ATTACGCATCTATTCC
1 ATTACGCATCTATTCC
58166049 A
1 A
58166050 ATATAGCGAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.24, C:0.33, G:0.06, T:0.36
Consensus pattern (16 bp):
ATTACGCATCTATTCC
Found at i:58172546 original size:18 final size:18
Alignment explanation
Indices: 58172497--58172547 Score: 75
Period size: 18 Copynumber: 2.8 Consensus size: 18
58172487 TTAAAGGACT
58172497 AGGTGTGTAATCACAAAC
1 AGGTGTGTAATCACAAAC
* **
58172515 AGGTGCGTTTTCACAAAC
1 AGGTGTGTAATCACAAAC
58172533 AGGTGTGTAATCACA
1 AGGTGTGTAATCACA
58172548 CCCTCTCTCA
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
18 27 1.00
ACGTcount: A:0.33, C:0.18, G:0.24, T:0.25
Consensus pattern (18 bp):
AGGTGTGTAATCACAAAC
Found at i:58172751 original size:27 final size:27
Alignment explanation
Indices: 58172712--58172935 Score: 261
Period size: 27 Copynumber: 8.3 Consensus size: 27
58172702 GTAATGGGCC
*
58172712 TAAAATGATCGAAATACCCTCGAAGGG
1 TAAAATGACCGAAATACCCTCGAAGGG
* ** *
58172739 TAAAATGACCGAACTACCGACAAAGGG
1 TAAAATGACCGAAATACCCTCGAAGGG
* * *
58172766 TAAAATGGCTGAAATA-CCTCGAATGG
1 TAAAATGACCGAAATACCCTCGAAGGG
* *
58172792 TAAAATGATCGAAATACCCCCGAAGGG
1 TAAAATGACCGAAATACCCTCGAAGGG
* *
58172819 TAAAATGAACGAAATGCCCTCGAAGGG
1 TAAAATGACCGAAATACCCTCGAAGGG
* * * *
58172846 TAAAATGACTGAAATACCTTTGAAGGA
1 TAAAATGACCGAAATACCCTCGAAGGG
* *
58172873 TAAAATGATCGAAATACCCTTGAAGGG
1 TAAAATGACCGAAATACCCTCGAAGGG
* *
58172900 TAAAATAACCGAAATACCCTCAAAGGG
1 TAAAATGACCGAAATACCCTCGAAGGG
58172927 TAAAATGAC
1 TAAAATGAC
58172936 TGTTATACCC
Statistics
Matches: 161, Mismatches: 35, Indels: 2
0.81 0.18 0.01
Matches are distributed among these distances:
26 19 0.12
27 142 0.88
ACGTcount: A:0.43, C:0.18, G:0.21, T:0.18
Consensus pattern (27 bp):
TAAAATGACCGAAATACCCTCGAAGGG
Found at i:58172845 original size:80 final size:81
Alignment explanation
Indices: 58172712--58172937 Score: 323
Period size: 80 Copynumber: 2.8 Consensus size: 81
58172702 GTAATGGGCC
* * ** *
58172712 TAAAATGATCGAAATACCCTCGAAGGGTAAAATGACCGAACTACCGACAAAGGGTAAAATGGCTG
1 TAAAATGATCGAAATACCCTCGAAGGGTAAAATGAACGAAATACCCTCAAAGGGTAAAATGACTG
58172777 AAATACC-TCGAATGG-
66 AAATACCTTCGAA-GGA
* * *
58172792 TAAAATGATCGAAATACCCCCGAAGGGTAAAATGAACGAAATGCCCTCGAAGGGTAAAATGACTG
1 TAAAATGATCGAAATACCCTCGAAGGGTAAAATGAACGAAATACCCTCAAAGGGTAAAATGACTG
*
58172857 AAATACCTTTGAAGGA
66 AAATACCTTCGAAGGA
*
58172873 TAAAATGATCGAAATACCCTTGAAGGGTAAAAT-AACCGAAATACCCTCAAAGGGTAAAATGACT
1 TAAAATGATCGAAATACCCTCGAAGGGTAAAATGAA-CGAAATACCCTCAAAGGGTAAAATGACT
58172937 G
65 G
58172938 TTATACCCCT
Statistics
Matches: 130, Mismatches: 13, Indels: 5
0.88 0.09 0.03
Matches are distributed among these distances:
80 68 0.52
81 62 0.48
ACGTcount: A:0.42, C:0.18, G:0.21, T:0.19
Consensus pattern (81 bp):
TAAAATGATCGAAATACCCTCGAAGGGTAAAATGAACGAAATACCCTCAAAGGGTAAAATGACTG
AAATACCTTCGAAGGA
Found at i:58173149 original size:26 final size:26
Alignment explanation
Indices: 58173113--58173173 Score: 113
Period size: 26 Copynumber: 2.3 Consensus size: 26
58173103 CCACATATAT
*
58173113 TGTTACTGGCAGCTTTGTTGCGTTAC
1 TGTTACTGGCAGCTTTGTTACGTTAC
58173139 TGTTACTGGCAGCTTTGTTACGTTAC
1 TGTTACTGGCAGCTTTGTTACGTTAC
58173165 TGTTACTGG
1 TGTTACTGG
58173174 TAGCGTTACT
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 34 1.00
ACGTcount: A:0.13, C:0.18, G:0.26, T:0.43
Consensus pattern (26 bp):
TGTTACTGGCAGCTTTGTTACGTTAC
Found at i:58173211 original size:26 final size:26
Alignment explanation
Indices: 58173113--58173212 Score: 110
Period size: 26 Copynumber: 3.8 Consensus size: 26
58173103 CCACATATAT
*
58173113 TGTTACTGGCAGCTTTGTTGCGTTAC
1 TGTTACTGGCAGCTTTGCTGCGTTAC
* *
58173139 TGTTACTGGCAGCTTTGTTACGTTAC
1 TGTTACTGGCAGCTTTGCTGCGTTAC
* * * * **
58173165 TGTTACTGGTAGCGTTACTGCATCGC
1 TGTTACTGGCAGCTTTGCTGCGTTAC
*
58173191 TATTACTGGCAGCTTTGCTGCG
1 TGTTACTGGCAGCTTTGCTGCG
58173213 ATATTGGTGT
Statistics
Matches: 60, Mismatches: 14, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
26 60 1.00
ACGTcount: A:0.14, C:0.21, G:0.26, T:0.39
Consensus pattern (26 bp):
TGTTACTGGCAGCTTTGCTGCGTTAC
Found at i:58174213 original size:18 final size:17
Alignment explanation
Indices: 58174180--58174215 Score: 54
Period size: 18 Copynumber: 2.1 Consensus size: 17
58174170 CTAAATTAGA
*
58174180 GAAAACTAAGACTGTAG
1 GAAAACTAAAACTGTAG
58174197 GAAAACTGAAAACTGTAG
1 GAAAACT-AAAACTGTAG
58174215 G
1 G
58174216 GAGACTCTTG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 7 0.41
18 10 0.59
ACGTcount: A:0.47, C:0.11, G:0.25, T:0.17
Consensus pattern (17 bp):
GAAAACTAAAACTGTAG
Found at i:58180654 original size:54 final size:54
Alignment explanation
Indices: 58180596--58180718 Score: 167
Period size: 54 Copynumber: 2.3 Consensus size: 54
58180586 TGTCCCCACT
* * * **
58180596 CGTGTAACTCACTGAGTTGCCCCACACGCCTGCGTG-CTAGGCTGTGTGCTAGGC
1 CGTGTAACTCACTGAGTTGCCACACACGCCGGCGTGTC-AAGCCCTGTGCTAGGC
* *
58180650 CGTGTAACTCTCTGAGTTGCCACACACGCCGGTGTGTCAAGCCCTGTGCTAGGC
1 CGTGTAACTCACTGAGTTGCCACACACGCCGGCGTGTCAAGCCCTGTGCTAGGC
58180704 CGTGTAACTCACTGA
1 CGTGTAACTCACTGA
58180719 CTTGAAAGAC
Statistics
Matches: 60, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
54 59 0.98
55 1 0.02
ACGTcount: A:0.17, C:0.31, G:0.28, T:0.24
Consensus pattern (54 bp):
CGTGTAACTCACTGAGTTGCCACACACGCCGGCGTGTCAAGCCCTGTGCTAGGC
Found at i:58181479 original size:40 final size:40
Alignment explanation
Indices: 58181421--58181626 Score: 225
Period size: 40 Copynumber: 5.2 Consensus size: 40
58181411 ATACTATTTG
* * * * * *
58181421 ATTCAAGGTTACCAAAGTATAAACATGGGCATGTATGTGC
1 ATTCAGGGGTACCGAAGTACAAACAGGGGCACGTATGTGC
* *
58181461 ATTCAGGTGTACCGAAGTACAAACAGGGGCACGTATGTAC
1 ATTCAGGGGTACCGAAGTACAAACAGGGGCACGTATGTGC
* * * **
58181501 ATTCAGGGGTACCGAAGTACATATAGGGGTACGTATGTAT
1 ATTCAGGGGTACCGAAGTACAAACAGGGGCACGTATGTGC
* * * *
58181541 ATTCAGGGGTACCGAAGTA-AATACAAGGCCACATATGTGT
1 ATTCAGGGGTACCGAAGTACAA-ACAGGGGCACGTATGTGC
* *
58181581 ATTCAGGGATACCGAAGTACAAATAGGGGCACGTATGTGC
1 ATTCAGGGGTACCGAAGTACAAACAGGGGCACGTATGTGC
58181621 ATTCAG
1 ATTCAG
58181627 ACAATAATTA
Statistics
Matches: 138, Mismatches: 26, Indels: 4
0.82 0.15 0.02
Matches are distributed among these distances:
39 1 0.01
40 135 0.98
41 2 0.01
ACGTcount: A:0.33, C:0.17, G:0.27, T:0.24
Consensus pattern (40 bp):
ATTCAGGGGTACCGAAGTACAAACAGGGGCACGTATGTGC
Found at i:58181507 original size:20 final size:20
Alignment explanation
Indices: 58181453--58181552 Score: 80
Period size: 20 Copynumber: 5.0 Consensus size: 20
58181443 ACATGGGCAT
* *
58181453 GTATGTGCATTCAGGTGTACC
1 GTATGTACATTCAGGGGTA-C
* ** *
58181474 G-AAGTACAAACAGGGGCAC
1 GTATGTACATTCAGGGGTAC
58181493 GTATGTACATTCAGGGGTACC
1 GTATGTACATTCAGGGGTA-C
*
58181514 G-AAGTACATAT-AGGGGTAC
1 GTATGTACAT-TCAGGGGTAC
*
58181533 GTATGTATATTCAGGGGTAC
1 GTATGTACATTCAGGGGTAC
58181553 CGAAGTAAAT
Statistics
Matches: 61, Mismatches: 13, Indels: 11
0.72 0.15 0.13
Matches are distributed among these distances:
19 5 0.08
20 52 0.85
21 4 0.07
ACGTcount: A:0.29, C:0.16, G:0.30, T:0.25
Consensus pattern (20 bp):
GTATGTACATTCAGGGGTAC
Found at i:58186940 original size:27 final size:27
Alignment explanation
Indices: 58186869--58187281 Score: 461
Period size: 27 Copynumber: 15.4 Consensus size: 27
58186859 ACCGAGTCAT
* * *
58186869 CGAAATA-CCCCATAAGATAAAATGAT
1 CGAAATACCCCCATAGGGTAAAATGAC
*
58186895 CGAAATA-CCCCGTAGGGTAAAATGAC
1 CGAAATACCCCCATAGGGTAAAATGAC
* *
58186921 CGAAATACCCCCATAGGGTAAATTAAC
1 CGAAATACCCCCATAGGGTAAAATGAC
*
58186948 CGAAATACCCCCATAGGGTAAAATGAT
1 CGAAATACCCCCATAGGGTAAAATGAC
* *
58186975 TGAAATACACCCATAGGGTAAAATGAC
1 CGAAATACCCCCATAGGGTAAAATGAC
* * *
58187002 TGAAATACCCTCATAAGGTAAAATGAC
1 CGAAATACCCCCATAGGGTAAAATGAC
* * *
58187029 CAAAATACCCCCATAAGGTAAAATGGC
1 CGAAATACCCCCATAGGGTAAAATGAC
* *
58187056 CGAAACACCCCTATAGGGTAAAATGAC
1 CGAAATACCCCCATAGGGTAAAATGAC
* ** * *
58187083 CAAAATACCCTTATGGGGTAAAATAAC
1 CGAAATACCCCCATAGGGTAAAATGAC
* *** *
58187110 TGAAATACCTTTATAGGGTAAAATGAT
1 CGAAATACCCCCATAGGGTAAAATGAC
* * * *
58187137 CGAATTACCCTCGTAAGGTAAAATGAC
1 CGAAATACCCCCATAGGGTAAAATGAC
*
58187164 CGAAATACCCCCATAGGGTAAAATGAT
1 CGAAATACCCCCATAGGGTAAAATGAC
* * *
58187191 CGAAATATCGCCATAGGTTAAAATGAC
1 CGAAATACCCCCATAGGGTAAAATGAC
*
58187218 CGAAATACCCCTATAGGGTAAAATGAC
1 CGAAATACCCCCATAGGGTAAAATGAC
*
58187245 CGAAATACCCCTATAGGGTAAAATGAC
1 CGAAATACCCCCATAGGGTAAAATGAC
**
58187272 TAAAATACCC
1 CGAAATACCC
58187282 ACACTGTACT
Statistics
Matches: 328, Mismatches: 58, Indels: 1
0.85 0.15 0.00
Matches are distributed among these distances:
26 29 0.09
27 299 0.91
ACGTcount: A:0.42, C:0.21, G:0.17, T:0.20
Consensus pattern (27 bp):
CGAAATACCCCCATAGGGTAAAATGAC
Found at i:58189320 original size:27 final size:27
Alignment explanation
Indices: 58189289--58189661 Score: 371
Period size: 27 Copynumber: 13.9 Consensus size: 27
58189279 TGAGACATCA
* **
58189289 AAATACCCCGATAGGGTAAAATGATTG
1 AAATACCCCCATAGGGTAAAATGACCG
* * *
58189316 AAATACCCCCGTAAGATAAAATGACCG
1 AAATACCCCCATAGGGTAAAATGACCG
*
58189343 AAATACCCCC-TAGGGTAAATTGACCG
1 AAATACCCCCATAGGGTAAAATGACCG
* ** ***
58189369 AAATACCCCCATTGGGTAAAAACATTA
1 AAATACCCCCATAGGGTAAAATGACCG
**
58189396 AAATA-CCCCATA-GGTAAAATGACTA
1 AAATACCCCCATAGGGTAAAATGACCG
** *
58189421 AAATACCTTCGTAGGGTAAAATGACCG
1 AAATACCCCCATAGGGTAAAATGACCG
* * * *
58189448 AAATACCCTCATTGGGTAGAATGACCA
1 AAATACCCCCATAGGGTAAAATGACCG
*
58189475 AAAT-CCCCCATAGGGTAAAATGATCG
1 AAATACCCCCATAGGGTAAAATGACCG
*
58189501 AAATACCCCTCCATAGGGTAAAATGATCG
1 AAATA-CCC-CCATAGGGTAAAATGACCG
** * * *
58189530 AAATACCCCTGTATGGTAGAATGACTG
1 AAATACCCCCATAGGGTAAAATGACCG
*
58189557 AAATACCCCCATA-GGTAAAATGACTG
1 AAATACCCCCATAGGGTAAAATGACCG
*
58189583 AAATACCCCCATAGGGTAAAATGACTG
1 AAATACCCCCATAGGGTAAAATGACCG
* *
58189610 AAATACCCCCGTTA-GGTAGAATGACCG
1 AAATACCCCC-ATAGGGTAAAATGACCG
*
58189637 AAATACCCCCATAAGGTAAAATGAC
1 AAATACCCCCATAGGGTAAAATGAC
58189662 TATTATACCC
Statistics
Matches: 288, Mismatches: 49, Indels: 18
0.81 0.14 0.05
Matches are distributed among these distances:
25 15 0.05
26 81 0.28
27 160 0.56
28 8 0.03
29 24 0.08
ACGTcount: A:0.40, C:0.22, G:0.18, T:0.20
Consensus pattern (27 bp):
AAATACCCCCATAGGGTAAAATGACCG
Found at i:58189628 original size:80 final size:80
Alignment explanation
Indices: 58189289--58189662 Score: 391
Period size: 80 Copynumber: 4.7 Consensus size: 80
58189279 TGAGACATCA
* * * * * *
58189289 AAATA-CCCCGATAGGGTAAAATGATTGAAATACCCCCGTAAGATAAAATGACCGAAATACCCCC
1 AAATACCCCCGTTA-GGTAGAATGACTGAAATACCCCCAT-AGGTAAAATGACTGAAATACCCCC
*
58189353 -TAGGGTAAATTGACCG
64 ATAGGGTAAAATGACCG
* * * ** * * * ** *
58189369 AAATACCCCCATTGGGTAAAAACATTAAAATA-CCCCATAGGTAAAATGACTAAAATACCTTCGT
1 AAATACCCCCGTTAGGTAGAATGACTGAAATACCCCCATAGGTAAAATGACTGAAATACCCCCAT
58189433 AGGGTAAAATGACCG
66 AGGGTAAAATGACCG
* * * **
58189448 AAATACCCTCATTGGGTAGAATGACCAAAAT-CCCCCATAGGGTAAAATGA-TCGAAATACCCCT
1 AAATACCCCCGTTAGGTAGAATGACTGAAATACCCCCATA-GGTAAAATGACT-GAAATA-CCC-
*
58189511 CCATAGGGTAAAATGATCG
62 CCATAGGGTAAAATGACCG
*
58189530 AAATACCCCTG-TATGGTAGAATGACTGAAATACCCCCATAGGTAAAATGACTGAAATACCCCCA
1 AAATACCCCCGTTA-GGTAGAATGACTGAAATACCCCCATAGGTAAAATGACTGAAATACCCCCA
*
58189594 TAGGGTAAAATGACTG
65 TAGGGTAAAATGACCG
*
58189610 AAATACCCCCGTTAGGTAGAATGACCGAAATACCCCCATAAGGTAAAATGACT
1 AAATACCCCCGTTAGGTAGAATGACTGAAATACCCCCAT-AGGTAAAATGACT
58189663 ATTATACCCC
Statistics
Matches: 248, Mismatches: 34, Indels: 23
0.81 0.11 0.08
Matches are distributed among these distances:
78 19 0.08
79 53 0.21
80 86 0.35
81 26 0.10
82 55 0.22
83 9 0.04
ACGTcount: A:0.40, C:0.22, G:0.18, T:0.20
Consensus pattern (80 bp):
AAATACCCCCGTTAGGTAGAATGACTGAAATACCCCCATAGGTAAAATGACTGAAATACCCCCAT
AGGGTAAAATGACCG
Found at i:58189672 original size:54 final size:53
Alignment explanation
Indices: 58189289--58189662 Score: 360
Period size: 53 Copynumber: 7.0 Consensus size: 53
58189279 TGAGACATCA
* ** * * * *
58189289 AAATACCCCGATAGGGTAAAATGATTGAAATACCCCCGTAAGATAAAATGACCG
1 AAATACCCCCATA-GGTAAAATGACCGAAATACCCCCATAGGGTAAAATGACTG
* * ** * *
58189343 AAATACCCCC-TAGGGTAAATTGACCGAAATACCCCCATTGGGTAAAAACATTA
1 AAATACCCCCATA-GGTAAAATGACCGAAATACCCCCATAGGGTAAAATGACTG
** ** * *
58189396 AAATA-CCCCATAGGTAAAATGACTAAAATACCTTCGTAGGGTAAAATGACCG
1 AAATACCCCCATAGGTAAAATGACCGAAATACCCCCATAGGGTAAAATGACTG
* * * *
58189448 AAATACCCTCATTGGGTAGAATGACCAAAAT-CCCCCATAGGGTAAAATGA-TCG
1 AAATACCCCCA-TAGGTAAAATGACCGAAATACCCCCATAGGGTAAAATGACT-G
* ** * *
58189501 AAATACCCCTCCATAGGGTAAAATGATCGAAATACCCCTGTATGGTAGAATGACTG
1 AAATA-CCC-CCATA-GGTAAAATGACCGAAATACCCCCATAGGGTAAAATGACTG
*
58189557 AAATACCCCCATAGGTAAAATGACTGAAATACCCCCATAGGGTAAAATGACTG
1 AAATACCCCCATAGGTAAAATGACCGAAATACCCCCATAGGGTAAAATGACTG
* * *
58189610 AAATACCCCCGTTAGGTAGAATGACCGAAATACCCCCATAAGGTAAAATGACT
1 AAATACCCCC-ATAGGTAAAATGACCGAAATACCCCCATAGGGTAAAATGACT
58189663 ATTATACCCC
Statistics
Matches: 258, Mismatches: 52, Indels: 20
0.78 0.16 0.06
Matches are distributed among these distances:
52 37 0.14
53 108 0.42
54 72 0.28
55 19 0.07
56 21 0.08
57 1 0.00
ACGTcount: A:0.40, C:0.22, G:0.18, T:0.20
Consensus pattern (53 bp):
AAATACCCCCATAGGTAAAATGACCGAAATACCCCCATAGGGTAAAATGACTG
Found at i:58189908 original size:26 final size:26
Alignment explanation
Indices: 58189855--58189911 Score: 78
Period size: 26 Copynumber: 2.2 Consensus size: 26
58189845 TTTGACACAT
* *
58189855 ATATTGTTACTGGCAGCTTCACTGCG
1 ATATTATTACTGGCAGCTTCACTACG
**
58189881 ATATTATTACTGGCAGCTTTGCTACG
1 ATATTATTACTGGCAGCTTCACTACG
58189907 ATATT
1 ATATT
58189912 GGTGTGTTGG
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.23, C:0.19, G:0.19, T:0.39
Consensus pattern (26 bp):
ATATTATTACTGGCAGCTTCACTACG
Found at i:58190053 original size:28 final size:28
Alignment explanation
Indices: 58190016--58190134 Score: 168
Period size: 28 Copynumber: 4.3 Consensus size: 28
58190006 CATTGTATTG
* * *
58190016 GTTACTGTATTGGGCTAAGACCCACATT
1 GTTACTATATTGGGCTAAGGCCCACACT
*
58190044 GTTACTGTATTGGGCTAAGGCCCACACT
1 GTTACTATATTGGGCTAAGGCCCACACT
*
58190072 GTTACTATATTGGGCTAAGGCCCACACA
1 GTTACTATATTGGGCTAAGGCCCACACT
* *
58190100 GTTACTATATCGAGCTAAGGCCCACACT
1 GTTACTATATTGGGCTAAGGCCCACACT
58190128 G-TACTAT
1 GTTACTAT
58190135 TACTGAATAG
Statistics
Matches: 84, Mismatches: 7, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
27 6 0.07
28 78 0.93
ACGTcount: A:0.26, C:0.24, G:0.21, T:0.29
Consensus pattern (28 bp):
GTTACTATATTGGGCTAAGGCCCACACT
Found at i:58192549 original size:27 final size:27
Alignment explanation
Indices: 58192511--58192577 Score: 84
Period size: 27 Copynumber: 2.5 Consensus size: 27
58192501 TCTTGACAGT
*
58192511 ACATAAAATAGTCATGATGGAGC-TTCC
1 ACATAAAATAGTCATGATAGA-CTTTCC
*
58192538 ACATAAAATAGTCTTGATAGACTTTCC
1 ACATAAAATAGTCATGATAGACTTTCC
58192565 ACA-AAAGATAGTC
1 ACATAAA-ATAGTC
58192578 CTAAAAAACT
Statistics
Matches: 36, Mismatches: 2, Indels: 4
0.86 0.05 0.10
Matches are distributed among these distances:
26 4 0.11
27 32 0.89
ACGTcount: A:0.40, C:0.18, G:0.15, T:0.27
Consensus pattern (27 bp):
ACATAAAATAGTCATGATAGACTTTCC
Found at i:58202141 original size:28 final size:28
Alignment explanation
Indices: 58202101--58202246 Score: 206
Period size: 28 Copynumber: 5.2 Consensus size: 28
58202091 CAGTGACAGT
58202101 ACAGTGTGGGCCTTAGCCCAATACAATA
1 ACAGTGTGGGCCTTAGCCCAATACAATA
*
58202129 ACAGTGTGGGCCTTAGCCCAATACAGTA
1 ACAGTGTGGGCCTTAGCCCAATACAATA
*
58202157 ACAGTGTGGGCCTTAGCTCAATACAGA-A
1 ACAGTGTGGGCCTTAGCCCAATACA-ATA
*
58202185 TCAGTGTGGGCCTTAGCCCAATACAGA-A
1 ACAGTGTGGGCCTTAGCCCAATACA-ATA
* * *
58202213 TCAGTGTGGGCCTTAGTCCAATACAGTA
1 ACAGTGTGGGCCTTAGCCCAATACAATA
58202241 ACAGTG
1 ACAGTG
58202247 CAGTGCAATA
Statistics
Matches: 108, Mismatches: 8, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
28 108 1.00
ACGTcount: A:0.29, C:0.23, G:0.25, T:0.23
Consensus pattern (28 bp):
ACAGTGTGGGCCTTAGCCCAATACAATA
Found at i:58202654 original size:27 final size:26
Alignment explanation
Indices: 58202609--58202768 Score: 144
Period size: 27 Copynumber: 5.9 Consensus size: 26
58202599 GGGATAATAA
* * *
58202609 TCATTTTATCCTATGGGGGTATTTTG
1 TCATTTTACCCTATAGGGGTATTTAG
* *
58202635 TTCATTTTATCTTATAGGGGTATTTAGG
1 -TCATTTTACCCTATAGGGGTATTTA-G
*
58202663 TCATTTTACCCTATGGGGGTATTTCAG
1 TCATTTTACCCTATAGGGGTATTT-AG
58202690 TCATTTTACCCTATAGGGGTATTTCAG
1 TCATTTTACCCTATAGGGGTATTT-AG
* * **
58202717 TCATTTT-CATCTATTAGAGGTAAAATAG
1 TCATTTTAC-CCTA-TAGGGGT-ATTTAG
58202745 TCATTTTACCCT-TCAGGGGTATTT
1 TCATTTTACCCTAT-AGGGGTATTT
58202769 TGGTTATTTT
Statistics
Matches: 111, Mismatches: 15, Indels: 15
0.79 0.11 0.11
Matches are distributed among these distances:
26 4 0.04
27 85 0.77
28 19 0.17
29 3 0.03
ACGTcount: A:0.22, C:0.14, G:0.19, T:0.44
Consensus pattern (26 bp):
TCATTTTACCCTATAGGGGTATTTAG
Found at i:58202680 original size:54 final size:53
Alignment explanation
Indices: 58202581--58202723 Score: 173
Period size: 54 Copynumber: 2.7 Consensus size: 53
58202571 GAGGCCATAA
* * * * *
58202581 CAGTCATTTTATCTCATAGGGATA-ATAATCATTTTATCCTATGGGGGTATTT
1 CAGTCATTTTATCTTATAGGGGTATTTAGTCATTTTACCCTATGGGGGTATTT
*
58202633 -TGTTCATTTTATCTTATAGGGGTATTTAGGTCATTTTACCCTATGGGGGTATTT
1 CAG-TCATTTTATCTTATAGGGGTATTTA-GTCATTTTACCCTATGGGGGTATTT
* *
58202687 CAGTCATTTTACCCTATAGGGGTATTTCAGTCATTTT
1 CAGTCATTTTATCTTATAGGGGTATTT-AGTCATTTT
58202724 CATCTATTAG
Statistics
Matches: 77, Mismatches: 9, Indels: 8
0.82 0.10 0.09
Matches are distributed among these distances:
51 1 0.01
52 19 0.25
53 2 0.03
54 53 0.69
55 2 0.03
ACGTcount: A:0.22, C:0.14, G:0.19, T:0.45
Consensus pattern (53 bp):
CAGTCATTTTATCTTATAGGGGTATTTAGTCATTTTACCCTATGGGGGTATTT
Found at i:58206560 original size:26 final size:25
Alignment explanation
Indices: 58206528--58206593 Score: 78
Period size: 26 Copynumber: 2.6 Consensus size: 25
58206518 CTATAAACAC
* *
58206528 TTCATATAACCATTCATATATTTAT
1 TTCATATAACCATTCATATAGTAAT
*
58206553 TTCTATATAAACATTTCATATAGTAAT
1 TTC-ATATAACCA-TTCATATAGTAAT
*
58206580 TTCATAAAACCATT
1 TTCATATAACCATT
58206594 TATCACATAA
Statistics
Matches: 34, Mismatches: 5, Indels: 4
0.79 0.12 0.09
Matches are distributed among these distances:
25 5 0.15
26 15 0.44
27 14 0.41
ACGTcount: A:0.39, C:0.15, G:0.02, T:0.44
Consensus pattern (25 bp):
TTCATATAACCATTCATATAGTAAT
Found at i:58210439 original size:26 final size:26
Alignment explanation
Indices: 58210406--58210590 Score: 174
Period size: 26 Copynumber: 7.1 Consensus size: 26
58210396 CAATGTTTGT
58210406 TAAATAAACACTGGCTCAAAGCCTGC
1 TAAATAAACACTGGCTCAAAGCCTGC
* *
58210432 TAAGTAAACAAC-GGCTCAAAGCCAGC
1 TAAATAAAC-ACTGGCTCAAAGCCTGC
* * *
58210458 TAAATAATCAATGACTCAAAGCCTGC
1 TAAATAAACACTGGCTCAAAGCCTGC
* * *
58210484 TAAATAAACACTAGCTCATAGACTGC
1 TAAATAAACACTGGCTCAAAGCCTGC
* * * * *
58210510 TAAGTAATCACCGGCTCAAAACCTAC
1 TAAATAAACACTGGCTCAAAGCCTGC
* * * *
58210536 AAAATAAACACTGACTCAAGGCCTAC
1 TAAATAAACACTGGCTCAAAGCCTGC
* * *
58210562 TAAATGAACACTCGCTCAAGGCCTGC
1 TAAATAAACACTGGCTCAAAGCCTGC
58210588 TAA
1 TAA
58210591 TCAGGTACAT
Statistics
Matches: 124, Mismatches: 33, Indels: 4
0.77 0.20 0.02
Matches are distributed among these distances:
25 1 0.01
26 121 0.98
27 2 0.02
ACGTcount: A:0.41, C:0.26, G:0.14, T:0.19
Consensus pattern (26 bp):
TAAATAAACACTGGCTCAAAGCCTGC
Found at i:58210525 original size:78 final size:78
Alignment explanation
Indices: 58210406--58210590 Score: 219
Period size: 78 Copynumber: 2.4 Consensus size: 78
58210396 CAATGTTTGT
* * * * *
58210406 TAAATAAACACTGGCTCAAAGCCTGCTAAGTAAACAACGGCTCAAAGCC-AGCTAAATAATCAAT
1 TAAATAAACACTAGCTCAAAGACTGCTAAGTAAACAACGGCTCAAAACCTA-CAAAATAAACAAT
*
58210470 GACTCAAAGCCTGC
65 GACTCAAAGCCTAC
* * * *
58210484 TAAATAAACACTAGCTCATAGACTGCTAAGTAATCACCGGCTCAAAACCTACAAAATAAACACTG
1 TAAATAAACACTAGCTCAAAGACTGCTAAGTAAACAACGGCTCAAAACCTACAAAATAAACAATG
*
58210549 ACTCAAGGCCTAC
66 ACTCAAAGCCTAC
* * * *
58210562 TAAATGAACACTCGCTCAAGGCCTGCTAA
1 TAAATAAACACTAGCTCAAAGACTGCTAA
58210591 TCAGGTACAT
Statistics
Matches: 90, Mismatches: 16, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
78 89 0.99
79 1 0.01
ACGTcount: A:0.41, C:0.26, G:0.14, T:0.19
Consensus pattern (78 bp):
TAAATAAACACTAGCTCAAAGACTGCTAAGTAAACAACGGCTCAAAACCTACAAAATAAACAATG
ACTCAAAGCCTAC
Found at i:58214934 original size:18 final size:20
Alignment explanation
Indices: 58214900--58214938 Score: 64
Period size: 18 Copynumber: 2.0 Consensus size: 20
58214890 TAATCCTCTC
58214900 AACCTTTTCAAATCTCTTAA
1 AACCTTTTCAAATCTCTTAA
58214920 AACCTTTT-AAA-CTCTTAA
1 AACCTTTTCAAATCTCTTAA
58214938 A
1 A
58214939 CCCATTTTTC
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 8 0.42
19 3 0.16
20 8 0.42
ACGTcount: A:0.38, C:0.23, G:0.00, T:0.38
Consensus pattern (20 bp):
AACCTTTTCAAATCTCTTAA
Found at i:58217599 original size:40 final size:41
Alignment explanation
Indices: 58217549--58217672 Score: 166
Period size: 43 Copynumber: 3.1 Consensus size: 41
58217539 AGGGTAAATC
* * *
58217549 CAACAGCCCAAGTTTATCTTCTCTTTTTTTAATT-TTTTTT
1 CAACAACCCAAGATTATCTTCTCTTTTTTAAATTCTTTTTT
58217589 CAACAACCCAAGATTATCTTCTCCTCTTTTTAAATTCTTTTTT
1 CAACAACCCAAGATTATCTTCT-CT-TTTTTAAATTCTTTTTT
*
58217632 CAACAACCCAAGATTATC-T-TC-TTTTTAAATTATTTTTT
1 CAACAACCCAAGATTATCTTCTCTTTTTTAAATTCTTTTTT
58217670 CAA
1 CAA
58217673 GGATAAAAAC
Statistics
Matches: 77, Mismatches: 4, Indels: 8
0.87 0.04 0.09
Matches are distributed among these distances:
38 19 0.25
40 21 0.27
41 3 0.04
42 10 0.13
43 24 0.31
ACGTcount: A:0.27, C:0.22, G:0.03, T:0.48
Consensus pattern (41 bp):
CAACAACCCAAGATTATCTTCTCTTTTTTAAATTCTTTTTT
Found at i:58217617 original size:43 final size:42
Alignment explanation
Indices: 58217549--58217672 Score: 161
Period size: 40 Copynumber: 3.1 Consensus size: 42
58217539 AGGGTAAATC
* * *
58217549 CAACAGCCCAAGTTTATCTTCTCT-TTTTTTAATT-TTTTTT
1 CAACAACCCAAGATTATCTTCTCTCTTTTTAAATTCTTTTTT
58217589 CAACAACCCAAGATTATCTTCTCCTCTTTTTAAATTCTTTTTT
1 CAACAACCCAAGATTATCTTCT-CTCTTTTTAAATTCTTTTTT
*
58217632 CAACAACCCAAGATTA---TCT-TCTTTTTAAATTATTTTTT
1 CAACAACCCAAGATTATCTTCTCTCTTTTTAAATTCTTTTTT
58217670 CAA
1 CAA
58217673 GGATAAAAAC
Statistics
Matches: 77, Mismatches: 4, Indels: 8
0.87 0.04 0.09
Matches are distributed among these distances:
38 21 0.27
40 23 0.30
41 2 0.03
42 9 0.12
43 22 0.29
ACGTcount: A:0.27, C:0.22, G:0.03, T:0.48
Consensus pattern (42 bp):
CAACAACCCAAGATTATCTTCTCTCTTTTTAAATTCTTTTTT
Found at i:58228745 original size:36 final size:36
Alignment explanation
Indices: 58228652--58228754 Score: 102
Period size: 36 Copynumber: 2.8 Consensus size: 36
58228642 TGAGCTTCAC
*
58228652 TCAGTATAACAATAGAATTTGCTCGATTGAACATCAT
1 TCAGTATAACAATA-AATTTGCTCGATTGAACACCAT
** * *
58228689 TCAGTATAACGGTAAGATTTGTTC-AGTT-AAGACCAT
1 TCAGTATAACAATAA-ATTTGCTCGA-TTGAACACCAT
*
58228725 TCAGTATAACAATATAATTTGCTTGATTGA
1 TCAGTATAACAATA-AATTTGCTCGATTGA
58228755 GCTTTACTCA
Statistics
Matches: 52, Mismatches: 9, Indels: 10
0.73 0.13 0.14
Matches are distributed among these distances:
36 28 0.54
37 24 0.46
ACGTcount: A:0.36, C:0.14, G:0.16, T:0.35
Consensus pattern (36 bp):
TCAGTATAACAATAAATTTGCTCGATTGAACACCAT
Found at i:58228782 original size:37 final size:37
Alignment explanation
Indices: 58228641--58228782 Score: 105
Period size: 37 Copynumber: 3.9 Consensus size: 37
58228631 TTCAACTCAT
*
58228641 TTGAGCTTCACTCAGTATAACAAT-AGAATTTGCTCGA
1 TTGAGCTTCACTCAGTATAACAATAAG-ATTTGCTTGA
* * * ** *
58228678 TTGAACATCATTCAGTATAACGGTAAGATTTG-TTCA
1 TTGAGCTTCACTCAGTATAACAATAAGATTTGCTTGA
* *
58228714 GTTAAGAC--CATTCAGTATAACAATATA-ATTTGCTTGA
1 -TTGAG-CTTCACTCAGTATAACAATA-AGATTTGCTTGA
* **
58228751 TTGAGCTTTACTCAGTATAACGGTAAGATTTG
1 TTGAGCTTCACTCAGTATAACAATAAGATTTG
58228783 GCTCAATAGA
Statistics
Matches: 80, Mismatches: 17, Indels: 16
0.71 0.15 0.14
Matches are distributed among these distances:
35 1 0.01
36 27 0.34
37 49 0.61
38 3 0.04
ACGTcount: A:0.33, C:0.15, G:0.17, T:0.35
Consensus pattern (37 bp):
TTGAGCTTCACTCAGTATAACAATAAGATTTGCTTGA
Found at i:58238087 original size:20 final size:18
Alignment explanation
Indices: 58238070--58238104 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
58238060 TGCCTTTATC
*
58238070 ACACTCACGATGCTTTTA
1 ACACTCACAATGCTTTTA
*
58238088 ACCCTCACAATGCTTTT
1 ACACTCACAATGCTTTT
58238105 GTTCCCAAAA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.26, C:0.31, G:0.09, T:0.34
Consensus pattern (18 bp):
ACACTCACAATGCTTTTA
Found at i:58238752 original size:22 final size:24
Alignment explanation
Indices: 58238716--58238763 Score: 73
Period size: 23 Copynumber: 2.1 Consensus size: 24
58238706 TATACCTATT
58238716 AAATTAAAAAAATCTAA-TCTTAA
1 AAATTAAAAAAATCTAAGTCTTAA
*
58238739 AAATT-AAAATATCTAAGTCTTAA
1 AAATTAAAAAAATCTAAGTCTTAA
58238762 AA
1 AA
58238764 TAAATAATAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 10 0.43
23 13 0.57
ACGTcount: A:0.58, C:0.08, G:0.02, T:0.31
Consensus pattern (24 bp):
AAATTAAAAAAATCTAAGTCTTAA
Found at i:58238772 original size:23 final size:21
Alignment explanation
Indices: 58238714--58238772 Score: 64
Period size: 22 Copynumber: 2.7 Consensus size: 21
58238704 AATATACCTA
* *
58238714 TTAAATTAAAAAAATCTAATC
1 TTAAAATAAAAATATCTAATC
*
58238735 TTAAAAATTAAAATATCTAAGTC
1 TT-AAAATAAAAATATCTAA-TC
58238758 TTAAAATAAATAATA
1 TTAAAATAAA-AATA
58238773 ATAAGGAAGT
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
21 2 0.06
22 21 0.68
23 8 0.26
ACGTcount: A:0.58, C:0.07, G:0.02, T:0.34
Consensus pattern (21 bp):
TTAAAATAAAAATATCTAATC
Found at i:58254724 original size:24 final size:24
Alignment explanation
Indices: 58254697--58254742 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
58254687 AGAACAATCC
* *
58254697 CAAAAGGAAATGCAGGAGCAGCTT
1 CAAAAGCAAATGAAGGAGCAGCTT
*
58254721 CAAAAGCAAATGAATGAGCAGC
1 CAAAAGCAAATGAAGGAGCAGC
58254743 AAAAGATGAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.46, C:0.17, G:0.26, T:0.11
Consensus pattern (24 bp):
CAAAAGCAAATGAAGGAGCAGCTT
Found at i:58262839 original size:44 final size:45
Alignment explanation
Indices: 58262776--58263106 Score: 203
Period size: 45 Copynumber: 7.6 Consensus size: 45
58262766 TAACAGATCG
*
58262776 AGTCTTATCTCCCTGAAGTTGTAGTGGAGCAGACT-AAG-TAGGCA
1 AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGAT-GGCA
*
58262820 AGTCTTATC-CTCCTGAAGTTGCAGTGAAGCAGACTGAAGATGGCA
1 AGTCTTATCTC-CCTGAAGTTGCAGTGGAGCAGACTGAAGATGGCA
* * * * *
58262865 AATCTTATCTCCCTGAAGTTGCAGTAGAGCAGATTAAAG-TCGGTA
1 AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGAT-GGCA
* * * * * ** *
58262910 A-TCCTATCTCGCTGAAGTTGCA-AGGAGCGGA-TTAA-A-ACCTT
1 AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATGGC-A
* * * **
58262951 AGATCTTATCTCTCTGAAGTTGCAG-AGAGCAGA-TCG--CAT--TT
1 AG-TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACT-GAAGATGGCA
*
58262992 AGTCTTATC-CTTCTGAAGTTGCAGT-GAGGCAGACTGAAGATGGCA
1 AGTCTTATCTC-CCTGAAGTTGCAGTGGA-GCAGACTGAAGATGGCA
* * * ** *
58263037 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCGGTA
1 AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATGGCA
* *
58263082 A-TCCTATCTCGCTGAAGTTGCAGTG
1 AGTCTTATCTCCCTGAAGTTGCAGTG
58263107 AGGGGATTAA
Statistics
Matches: 228, Mismatches: 36, Indels: 46
0.74 0.12 0.15
Matches are distributed among these distances:
39 1 0.00
40 22 0.10
41 10 0.04
42 4 0.02
43 36 0.16
44 73 0.32
45 77 0.34
46 5 0.02
ACGTcount: A:0.28, C:0.20, G:0.25, T:0.28
Consensus pattern (45 bp):
AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATGGCA
Found at i:58262961 original size:43 final size:43
Alignment explanation
Indices: 58262822--58263458 Score: 308
Period size: 44 Copynumber: 14.7 Consensus size: 43
58262812 AGTAGGCAAG
* * ** * *
58262822 TCTTATC-CTCCTGAAGTTGCAGTGAAGCAGACTGAAGATGGCAAA
1 TCTTATCTCT-CTGAAGTTGCAGTG-AGCAGA-TTAAAACCGTAGA
* * *
58262867 TCTTATCTCCCTGAAGTTGCAGTAGAGCAGATTAAAGTCGGTA-A
1 TCTTATCTCTCTGAAGTTGCAGT-GAGCAGATTAAA-ACCGTAGA
* * * *
58262911 TCCTATCTCGCTGAAGTTGCAAG-GAGCGGATTAAAACCTTAGA
1 TCTTATCTCTCTGAAGTTGC-AGTGAGCAGATTAAAACCGTAGA
* *** **
58262954 TCTTATCTCTCTGAAGTTGCAGAGAGCAGA-TCGCA-TTTAG-
1 TCTTATCTCTCTGAAGTTGCAGTGAGCAGATTAAAACCGTAGA
* * ** * *
58262994 TCTTATC-CTTCTGAAGTTGCAGTGAGGCAGACTGAAGATGGCAAA
1 TCTTATCTC-TCTGAAGTTGCAGTGA-GCAGA-TTAAAACCGTAGA
* *
58263039 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCGGTA-A
1 TCTTATCTCTCTGAAGTTGCAGT-GAGCAGATTAAAACC-GTAGA
* * ** *
58263083 TCCTATCTCGCTGAAGTTGCAGTGAGGGGATTAAAACCTTAGA
1 TCTTATCTCTCTGAAGTTGCAGTGAGCAGATTAAAACCGTAGA
* *** *
58263126 TCTTATCTCTCTGAAGTTGCAGAGAGCAGA-TCGCATC-TAG-
1 TCTTATCTCTCTGAAGTTGCAGTGAGCAGATTAAAACCGTAGA
* * * * ** * *
58263166 TCTTGTC-CTTCTAAAGTTGCAGTGAGGCAGGCTGAAAATGGCAAA
1 TCTTATCTC-TCTGAAGTTGCAGTGA-GCA-GATTAAAACCGTAGA
*
58263211 TCTTATCT-TCCTGAAGTTGCAGTGGAGCAGATTAAAGCCGATA-A
1 TCTTATCTCT-CTGAAGTTGCAGT-GAGCAGATTAAAACCG-TAGA
* ** * *
58263255 TCCTATAT-TC-CTGAAGTTGTAAGTTGAGTGGATTAAAACCTTGGA
1 T-CT-TATCTCTCTGAAGTTG-CAG-TGAGCAGATTAAAACCGTAGA
* * *** **
58263300 TCTTATCTCTCTAAAGTTGCAGAGAGCAGA-TCGTA-TTTAG-
1 TCTTATCTCTCTGAAGTTGCAGTGAGCAGATTAAAACCGTAGA
* *
58263340 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAACCCGATA-A
1 TCTTATCTCTCTGAAGTTGCAGT-GAGCAGATTAAAACCG-TAGA
* ** * *
58263384 TCCTATCT-TCCTGAAGTTGCAGTGGAGTGGATTAAAACCTTGGA
1 TCTTATCTCT-CTGAAGTTGCAGT-GAGCAGATTAAAACCGTAGA
*
58263428 TCTTATCTCTCTGAAGTTGCAGAGAGCAGAT
1 TCTTATCTCTCTGAAGTTGCAGTGAGCAGAT
58263459 CGTATTTAGT
Statistics
Matches: 445, Mismatches: 105, Indels: 86
0.70 0.17 0.14
Matches are distributed among these distances:
39 2 0.00
40 62 0.14
41 25 0.06
42 16 0.04
43 92 0.21
44 129 0.29
45 108 0.24
46 11 0.02
ACGTcount: A:0.28, C:0.19, G:0.24, T:0.29
Consensus pattern (43 bp):
TCTTATCTCTCTGAAGTTGCAGTGAGCAGATTAAAACCGTAGA
Found at i:58263069 original size:172 final size:173
Alignment explanation
Indices: 58262820--58263363 Score: 862
Period size: 172 Copynumber: 3.2 Consensus size: 173
58262810 TAAGTAGGCA
*
58262820 AGTCTTATCCTCCTGAAGTTGCAGTGAAGCAGACTGAAGATGGCAAATCTTATCTCCCTGAAGTT
1 AGTCTTATCCTCCTGAAGTTGCAGTGAGGCAGACTGAAGATGGCAAATCTTATCTCCCTGAAGTT
* *
58262885 GCAGTAGAGCAGATTAAAGTCGGTAATCCTATCTCGCTGAAGTTGCAAG-GAGCGGATTAAAACC
66 GCAGTGGAGCAGATTAAAGCCGGTAATCCTATCTCGCTGAAGTTGCAAGTGAGCGGATTAAAACC
58262949 TTAGATCTTATCTCTCTGAAGTTGCAGAGAGCAGATCGCATTT
131 TTAGATCTTATCTCTCTGAAGTTGCAGAGAGCAGATCGCATTT
*
58262992 AGTCTTATCCTTCTGAAGTTGCAGTGAGGCAGACTGAAGATGGCAAATCTTATCTCCCTGAAGTT
1 AGTCTTATCCTCCTGAAGTTGCAGTGAGGCAGACTGAAGATGGCAAATCTTATCTCCCTGAAGTT
*
58263057 GCAGTGGAGCAGATTAAAGCCGGTAATCCTATCTCGCTGAAGTTGC-AGTGAGGGGATTAAAACC
66 GCAGTGGAGCAGATTAAAGCCGGTAATCCTATCTCGCTGAAGTTGCAAGTGAGCGGATTAAAACC
*
58263121 TTAGATCTTATCTCTCTGAAGTTGCAGAGAGCAGATCGCATCT
131 TTAGATCTTATCTCTCTGAAGTTGCAGAGAGCAGATCGCATTT
* * * * * *
58263164 AGTCTTGTCCTTCTAAAGTTGCAGTGAGGCAGGCTGAAAATGGCAAATCTTATCTTCCTGAAGTT
1 AGTCTTATCCTCCTGAAGTTGCAGTGAGGCAGACTGAAGATGGCAAATCTTATCTCCCTGAAGTT
* * * *
58263229 GCAGTGGAGCAGATTAAAGCCGATAATCCTATATTC-CTGAAGTTGTAAGTTGAGTGGATTAAAA
66 GCAGTGGAGCAGATTAAAGCCGGTAATCCTAT-CTCGCTGAAGTTGCAAG-TGAGCGGATTAAAA
* * *
58263293 CCTTGGATCTTATCTCTCTAAAGTTGCAGAGAGCAGATCGTATTT
129 CCTTAGATCTTATCTCTCTGAAGTTGCAGAGAGCAGATCGCATTT
58263338 AGTCTTAT-CTCCCTGAAGTTGCAGTG
1 AGTCTTATCCT-CCTGAAGTTGCAGTG
58263364 GAGCAGATTA
Statistics
Matches: 345, Mismatches: 22, Indels: 8
0.92 0.06 0.02
Matches are distributed among these distances:
171 2 0.01
172 263 0.76
173 6 0.02
174 74 0.21
ACGTcount: A:0.28, C:0.19, G:0.24, T:0.29
Consensus pattern (173 bp):
AGTCTTATCCTCCTGAAGTTGCAGTGAGGCAGACTGAAGATGGCAAATCTTATCTCCCTGAAGTT
GCAGTGGAGCAGATTAAAGCCGGTAATCCTATCTCGCTGAAGTTGCAAGTGAGCGGATTAAAACC
TTAGATCTTATCTCTCTGAAGTTGCAGAGAGCAGATCGCATTT
Found at i:58263468 original size:128 final size:129
Alignment explanation
Indices: 58263211--58263504 Score: 500
Period size: 129 Copynumber: 2.3 Consensus size: 129
58263201 AAATGGCAAA
* *
58263211 TCTTATCTTCCTGAAGTTGCAGTGGAGCAGATTAAAGCCGATAATCCTATATTCCTGAAGTTGTA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAACCCGATAATCCTATATTCCTGAAGTTGTA
*
58263276 AGTTGAGTGGATTAAAACCTTGGATCTTATCTCTCTAAAGTTGCAGAGAGCAGATCGTATTTAG
66 AGTGGAGTGGATTAAAACCTTGGATCTTATCTCTCTAAAGTTGCAGAGAGCAGATCGTATTTAG
* *
58263340 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAACCCGATAATCCTATCTTCCTGAAGTTG-C
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAACCCGATAATCCTATATTCCTGAAGTTGTA
*
58263404 AGTGGAGTGGATTAAAACCTTGGATCTTATCTCTCTGAAGTTGCAGAGAGCAGATCGTATTTAG
66 AGTGGAGTGGATTAAAACCTTGGATCTTATCTCTCTAAAGTTGCAGAGAGCAGATCGTATTTAG
* *
58263468 TCTTATCTCCTTGAAAGTTGCAGTGGAGTAGATTAAA
1 TCTTATCTCCCTG-AAGTTGCAGTGGAGCAGATTAAA
58263505 GCACTAGTTT
Statistics
Matches: 156, Mismatches: 8, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
128 74 0.47
129 82 0.53
ACGTcount: A:0.28, C:0.17, G:0.22, T:0.33
Consensus pattern (129 bp):
TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAACCCGATAATCCTATATTCCTGAAGTTGTA
AGTGGAGTGGATTAAAACCTTGGATCTTATCTCTCTAAAGTTGCAGAGAGCAGATCGTATTTAG
Found at i:58269393 original size:3 final size:3
Alignment explanation
Indices: 58269385--58269432 Score: 96
Period size: 3 Copynumber: 16.0 Consensus size: 3
58269375 GTCAAAGTTG
58269385 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
58269433 AGATGAATCT
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 45 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:58269956 original size:23 final size:22
Alignment explanation
Indices: 58269904--58269961 Score: 68
Period size: 19 Copynumber: 2.7 Consensus size: 22
58269894 AATCTTCAAG
*
58269904 GATATGCAATTTTAG---ATAA
1 GATATGCAATCTTAGAATATAA
58269923 GATATGCAATCTTAGAATATAA
1 GATATGCAATCTTAGAATATAA
*
58269945 GATTTTGCAATCTTAGA
1 GA-TATGCAATCTTAGA
58269962 GATTTAATTC
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
19 14 0.42
22 6 0.18
23 13 0.39
ACGTcount: A:0.40, C:0.09, G:0.16, T:0.36
Consensus pattern (22 bp):
GATATGCAATCTTAGAATATAA
Found at i:58270827 original size:46 final size:46
Alignment explanation
Indices: 58270766--58270888 Score: 119
Period size: 45 Copynumber: 2.7 Consensus size: 46
58270756 ATCTTGTTTT
**
58270766 ATTATTTGT-AATTTATCAATATTATTATTTTAAATTCATTGTTAAC
1 ATTATTT-TAAATTTATCAATATTATTATTTTAAATTCATCATTAAC
* * *
58270812 ATTATTTTAAATTTATC-ATGTATATCTATTTTAAATTTATCATTAAT
1 ATTATTTTAAATTTATCAATAT-TAT-TATTTTAAATTCATCATTAAC
* *
58270859 A-T-TTTTAAATTTATTATATACTATTATTTT
1 ATTATTTTAAATTTATCA-ATATTATTATTTT
58270889 GGATTTATCA
Statistics
Matches: 64, Mismatches: 8, Indels: 11
0.77 0.10 0.13
Matches are distributed among these distances:
45 22 0.34
46 22 0.34
47 20 0.31
ACGTcount: A:0.35, C:0.06, G:0.02, T:0.57
Consensus pattern (46 bp):
ATTATTTTAAATTTATCAATATTATTATTTTAAATTCATCATTAAC
Found at i:58270846 original size:24 final size:23
Alignment explanation
Indices: 58270741--58270977 Score: 131
Period size: 24 Copynumber: 10.3 Consensus size: 23
58270731 TATTGTATAT
* * *
58270741 TATTATTTTAGATTTATCTTGTTT
1 TATTATTTTAAATTTATCATG-TA
*
58270765 TATTATTTGT-AATTTATCA-ATA
1 TATTATTT-TAAATTTATCATGTA
*
58270787 TTATTATTTTAAATTCAT--TGTTAA
1 -TATTATTTTAAATTTATCATG-T-A
*
58270811 CATTATTTTAAATTTATCATGTA
1 TATTATTTTAAATTTATCATGTA
58270834 TATCTATTTTAAATTTATCAT-TA
1 TAT-TATTTTAAATTTATCATGTA
* *
58270857 -A-TATTTTTAAATTTATTATATA
1 TATTA-TTTTAAATTTATCATGTA
**
58270879 CTATTATTTTGGATTTATCATGTA
1 -TATTATTTTAAATTTATCATGTA
* *
58270903 TGATTATTCTAGAA-TTATCAT-CA
1 T-ATTATTTTA-AATTTATCATGTA
* *
58270926 AAAT-TTTTAAATTTTAT-ATGTA
1 TATTATTTTAAA-TTTATCATGTA
* *
58270948 TTATTATTTCAAATTTAT--TATA
1 -TATTATTTTAAATTTATCATGTA
58270970 TATTATTT
1 TATTATTT
58270978 ATTGTAAATT
Statistics
Matches: 166, Mismatches: 26, Indels: 45
0.70 0.11 0.19
Matches are distributed among these distances:
20 4 0.02
21 28 0.17
22 15 0.09
23 44 0.27
24 69 0.42
25 6 0.04
ACGTcount: A:0.33, C:0.05, G:0.05, T:0.57
Consensus pattern (23 bp):
TATTATTTTAAATTTATCATGTA
Found at i:58270898 original size:69 final size:68
Alignment explanation
Indices: 58270694--58270977 Score: 204
Period size: 69 Copynumber: 4.1 Consensus size: 68
58270684 TGTTTATACT
* * * *** * *
58270694 TATTATTATTAAATTAACCATTAATATTATCTAAGCGTATTGTATATTATTATTTTAGATTTATC
1 TATTATT-TTAAATTTATCATTAATATT-TTTAAATTTATTATATACTATTATTTTAGATTTATC
* *
58270759 TTGTTT
64 ATG-TA
* * * * *
58270765 TATTATTTGT-AATTTATCAATATTATTATTTTAAATTCATTGT-TAAC-ATTATTTTAAATTTA
1 TATTATTT-TAAATTTATCATTAATA-T-TTTTAAATTTATTATAT-ACTATTATTTTAGATTTA
58270827 TCATGTA
62 TCATGTA
*
58270834 TATCTATTTTAAATTTATCATTAATATTTTTAAATTTATTATATACTATTATTTTGGATTTATCA
1 TAT-TATTTTAAATTTATCATTAATATTTTTAAATTTATTATATACTATTATTTTAGATTTATCA
58270899 TGTA
65 TGTA
* * * * * * *
58270903 TGATTATTCTAGAA-TTATCATCAAAATTTTTAAATTT-TATATGTATTATTATTTCAAATTTAT
1 T-ATTATTTTA-AATTTATCATTAATATTTTTAAATTTAT-TATATACTATTATTTTAGATTTAT
*
58270966 --TATA
63 CATGTA
58270970 TATTATTT
1 TATTATTT
58270978 ATTGTAAATT
Statistics
Matches: 173, Mismatches: 29, Indels: 27
0.76 0.13 0.12
Matches are distributed among these distances:
66 6 0.03
67 4 0.02
68 16 0.09
69 74 0.43
70 53 0.31
71 19 0.11
72 1 0.01
ACGTcount: A:0.34, C:0.06, G:0.05, T:0.55
Consensus pattern (68 bp):
TATTATTTTAAATTTATCATTAATATTTTTAAATTTATTATATACTATTATTTTAGATTTATCAT
GTA
Found at i:58270989 original size:24 final size:23
Alignment explanation
Indices: 58270931--58270989 Score: 59
Period size: 24 Copynumber: 2.4 Consensus size: 23
58270921 CATCAAAATT
58270931 TTTAAATT-TTATATGTATTATTA
1 TTTAAATTATTATA-GTATTATTA
58270954 TTTCAAATTTATTATA-TATTATTTA
1 TTT-AAA-TTATTATAGTATTA-TTA
58270979 TTGTAAATTAT
1 TT-TAAATTAT
58270990 CCAATTCACT
Statistics
Matches: 31, Mismatches: 0, Indels: 9
0.77 0.00 0.22
Matches are distributed among these distances:
23 3 0.10
24 12 0.39
25 10 0.32
26 6 0.19
ACGTcount: A:0.36, C:0.02, G:0.03, T:0.59
Consensus pattern (23 bp):
TTTAAATTATTATAGTATTATTA
Found at i:58271063 original size:23 final size:23
Alignment explanation
Indices: 58271036--58271080 Score: 72
Period size: 23 Copynumber: 2.0 Consensus size: 23
58271026 AATTGTACAT
*
58271036 TCATATATATTATTTGTTTTAAC
1 TCATATATATTATTTATTTTAAC
*
58271059 TCATATATATTGTTTATTTTAA
1 TCATATATATTATTTATTTTAA
58271081 AATTTTGAAC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.31, C:0.07, G:0.04, T:0.58
Consensus pattern (23 bp):
TCATATATATTATTTATTTTAAC
Found at i:58272598 original size:17 final size:17
Alignment explanation
Indices: 58272573--58272607 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
58272563 TGTGTTTTGC
*
58272573 TTTGGCTGCATGACATT
1 TTTGACTGCATGACATT
*
58272590 TTTGACTGCATGGCATT
1 TTTGACTGCATGACATT
58272607 T
1 T
58272608 CATCATAGAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.17, C:0.17, G:0.23, T:0.43
Consensus pattern (17 bp):
TTTGACTGCATGACATT
Found at i:58273007 original size:14 final size:14
Alignment explanation
Indices: 58272988--58273014 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
58272978 AAGAGATCTG
58272988 TTTTCTAGTAAAGT
1 TTTTCTAGTAAAGT
58273002 TTTTCTAGTAAAG
1 TTTTCTAGTAAAG
58273015 AATTGAACCA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.30, C:0.07, G:0.15, T:0.48
Consensus pattern (14 bp):
TTTTCTAGTAAAGT
Found at i:58277829 original size:223 final size:225
Alignment explanation
Indices: 58277521--58278600 Score: 1200
Period size: 223 Copynumber: 4.8 Consensus size: 225
58277511 AGAGTAAGTT
** * *
58277521 GAAAATAGTAGATCTTGTCTTCCTGTACTGGCAGTGAAGTAGATCGAAGGTAGTAGATCTTGTCT
1 GAAAATAACAGATCTTGTCTTCCTGTACTGGCAGTGAAGTAGATCGAAGATAGCAGATCTTGTCT
* * *
58277586 TCCTGTACTGGAAGCGAAGTAGATCAAAGATAGCAGATCTTGTCTTCCTGTATTGACAGCGAAGT
66 TCCTGTACTGGCAGCGAAGTAGATCAAAGATAGCAGATCTTGTCTTCCTGTACTGGCAGCGAAGT
* * * * * *
58277651 AGATCAAAGATAGCAGATCTTGTCTTTCTGTATTGGCAGCAAAGTAGATCGAAGATACCA-ACCT
131 AGATCGAAGATAGCAGATCTTGTCTTCCTGTACTGGCAGCGAAGTAGATCGAAGATAGCAGATCT
* * *** * * * *
58277715 TATCTCCCTG-AGCAGCAGTGGAGTAGGTT
196 TGTCTTCCTGTATTGGCAGCGAAGTAGATC
*
58277744 GAAAATAACAGATCTTGTCTTCTTGTACTGGCAGTGAAGTAGATCGAAGATAGCAGATCTTGTCT
1 GAAAATAACAGATCTTGTCTTCCTGTACTGGCAGTGAAGTAGATCGAAGATAGCAGATCTTGTCT
* *
58277809 TCCTGTACTGGCAGCGAAGTAGATCGAAGATAGTAGATCTTGTCTTCCTGTACTGGCAGCGAAGT
66 TCCTGTACTGGCAGCGAAGTAGATCAAAGATAGCAGATCTTGTCTTCCTGTACTGGCAGCGAAGT
* * * *
58277874 AGATCAAAAATAGCAGATCTTGTCTTCCTATATTGGCAGCGAAGTAGATCGAAGATAGCAGATCT
131 AGATCGAAGATAGCAGATCTTGTCTTCCTGTACTGGCAGCGAAGTAGATCGAAGATAGCAGATCT
* *
58277939 TGTCTTTCTGTATTGGCAGCAAAGTAGATC
196 TGTCTTCCTGTATTGGCAGCGAAGTAGATC
* * * * * * * * * * *
58277969 GAAGATACCA-ACCTTATCTCCCTG-AGC-AGCAGTGGAGTAGGTTGAAAATAACAGATCTTGTC
1 GAAAATAACAGATCTTGTCTTCCTGTA-CTGGCAGTGAAGTAGATCGAAGATAGCAGATCTTGTC
* * *
58278031 TTCTTGTACTGGCAGTGAAGTAGATCGAAGATAGCAGATCTTGTCTTCCTGTACTGGCAGCGAAG
65 TTCCTGTACTGGCAGCGAAGTAGATCAAAGATAGCAGATCTTGTCTTCCTGTACTGGCAGCGAAG
* * *
58278096 TAGATCGAAGATAGTAGATCTTGTCTTCCTGTACTGGCAGCGAAGTAGATCAAAAATAGCAGATC
130 TAGATCGAAGATAGCAGATCTTGTCTTCCTGTACTGGCAGCGAAGTAGATCGAAGATAGCAGATC
58278161 TTGTCTTCCTGTATTGGCAGCGAAGTAGATC
195 TTGTCTTCCTGTATTGGCAGCGAAGTAGATC
* * * * * ** * * *
58278192 GAAGATAGCAGATCTTGCCTTTCTGTACTGGTAGCAAAGTAGATCGAAGATACCAG-CCTTATCT
1 GAAAATAACAGATCTTGTCTTCCTGTACTGGCAGTGAAGTAGATCGAAGATAGCAGATCTTGTCT
* * * *
58278256 CCCTG-A---GCAGCAGTAGAGTAGGTTGAAA-ATAGCAGATCTTGTATTCCTGTACTGGCAGCG
66 TCCTGTACTGGCAGC-G-A-AGTA-GATCAAAGATAGCAGATCTTGTCTTCCTGTACTGGCAGCG
* * * *
58278316 AAGTAGATCGAAGATAGCAGACCTTGTCTTCCTGTATTGGCAGTGAAGTAGATCGAAGATAGTAG
127 AAGTAGATCGAAGATAGCAGATCTTGTCTTCCTGTACTGGCAGCGAAGTAGATCGAAGATAGCAG
*
58278381 ATCTTGTCTTCCTGTATTGGAAGCGAAGTAGATC
192 ATCTTGTCTTCCTGTATTGGCAGCGAAGTAGATC
* * * * * * * ** * *
58278415 G-AAGTCACA-AGCCTTGTCTCCCTG-AGC-AGCAGTGGAGTAGGTTAAAAAAATAGCAGATTTT
1 GAAAATAACAGA-TCTTGTCTTCCTGTA-CTGGCAGTGAAGTA-GAT-CGAAGATAGCAGATCTT
* * ** * *
58278476 GTCTTCCTGTATTAGCAGTAAAGTAGATCAAAGATAGCAGATCTTGTCTTCCTATATTGGCAGCG
62 GTCTTCCTGTACTGGCAGCGAAGTAGATCAAAGATAGCAGATCTTGTCTTCCTGTACTGGCAGCG
* *
58278541 AAGTAGATCGAAGATAGCAGATCTTGTCTTCCTGTACTGGTAGCGCAGTAGATCGAAGAT
127 AAGTAGATCGAAGATAGCAGATCTTGTCTTCCTGTACTGGCAGCGAAGTAGATCGAAGAT
58278601 GGCCAATCTT
Statistics
Matches: 720, Mismatches: 117, Indels: 38
0.82 0.13 0.04
Matches are distributed among these distances:
220 4 0.01
221 10 0.01
222 17 0.02
223 499 0.69
224 58 0.08
225 127 0.18
226 1 0.00
228 4 0.01
ACGTcount: A:0.29, C:0.18, G:0.25, T:0.28
Consensus pattern (225 bp):
GAAAATAACAGATCTTGTCTTCCTGTACTGGCAGTGAAGTAGATCGAAGATAGCAGATCTTGTCT
TCCTGTACTGGCAGCGAAGTAGATCAAAGATAGCAGATCTTGTCTTCCTGTACTGGCAGCGAAGT
AGATCGAAGATAGCAGATCTTGTCTTCCTGTACTGGCAGCGAAGTAGATCGAAGATAGCAGATCT
TGTCTTCCTGTATTGGCAGCGAAGTAGATC
Found at i:58278007 original size:268 final size:268
Alignment explanation
Indices: 58277525--58278414 Score: 1582
Period size: 268 Copynumber: 3.3 Consensus size: 268
58277515 TAAGTTGAAA
* * *
58277525 ATAGTAGATCTTGTCTTCCTGTACTGGCAGTGAAGTAGATCGAAGGTAGTAGATCTTGTCTTCCT
1 ATAGCAGATCTTGTCTTCCTGTACTGGCAGCGAAGTAGATCGAAGATAGTAGATCTTGTCTTCCT
* *
58277590 GTACTGGAAGCGAAGTAGATCAAAGATAGCAGATCTTGTCTTCCTGTATTGACAGCGAAGTAGAT
66 GTACTGGAAGCGAAGTAGATCAAAAATAGCAGATCTTGTCTTCCTGTATTGGCAGCGAAGTAGAT
*
58277655 CAAAGATAGCAGATCTTGTCTTTCTGTATTGGCAGCAAAGTAGATCGAAGATACCAACCTTATCT
131 CGAAGATAGCAGATCTTGTCTTTCTGTATTGGCAGCAAAGTAGATCGAAGATACCAACCTTATCT
58277720 CCCTGAGCAGCAGTGGAGTAGGTTGAAAATAACAGATCTTGTCTTCTTGTACTGGCAGTGAAGTA
196 CCCTGAGCAGCAGTGGAGTAGGTTGAAAATAACAGATCTTGTCTTCTTGTACTGGCAGTGAAGTA
58277785 GATCGAAG
261 GATCGAAG
58277793 ATAGCAGATCTTGTCTTCCTGTACTGGCAGCGAAGTAGATCGAAGATAGTAGATCTTGTCTTCCT
1 ATAGCAGATCTTGTCTTCCTGTACTGGCAGCGAAGTAGATCGAAGATAGTAGATCTTGTCTTCCT
* *
58277858 GTACTGGCAGCGAAGTAGATCAAAAATAGCAGATCTTGTCTTCCTATATTGGCAGCGAAGTAGAT
66 GTACTGGAAGCGAAGTAGATCAAAAATAGCAGATCTTGTCTTCCTGTATTGGCAGCGAAGTAGAT
58277923 CGAAGATAGCAGATCTTGTCTTTCTGTATTGGCAGCAAAGTAGATCGAAGATACCAACCTTATCT
131 CGAAGATAGCAGATCTTGTCTTTCTGTATTGGCAGCAAAGTAGATCGAAGATACCAACCTTATCT
58277988 CCCTGAGCAGCAGTGGAGTAGGTTGAAAATAACAGATCTTGTCTTCTTGTACTGGCAGTGAAGTA
196 CCCTGAGCAGCAGTGGAGTAGGTTGAAAATAACAGATCTTGTCTTCTTGTACTGGCAGTGAAGTA
58278053 GATCGAAG
261 GATCGAAG
58278061 ATAGCAGATCTTGTCTTCCTGTACTGGCAGCGAAGTAGATCGAAGATAGTAGATCTTGTCTTCCT
1 ATAGCAGATCTTGTCTTCCTGTACTGGCAGCGAAGTAGATCGAAGATAGTAGATCTTGTCTTCCT
*
58278126 GTACTGGCAGCGAAGTAGATCAAAAATAGCAGATCTTGTCTTCCTGTATTGGCAGCGAAGTAGAT
66 GTACTGGAAGCGAAGTAGATCAAAAATAGCAGATCTTGTCTTCCTGTATTGGCAGCGAAGTAGAT
* * * *
58278191 CGAAGATAGCAGATCTTGCCTTTCTGTACTGGTAGCAAAGTAGATCGAAGATACCAGCCTTATCT
131 CGAAGATAGCAGATCTTGTCTTTCTGTATTGGCAGCAAAGTAGATCGAAGATACCAACCTTATCT
* * * * *
58278256 CCCTGAGCAGCAGTAGAGTAGGTTGAAAATAGCAGATCTTGTATTCCTGTACTGGCAGCGAAGTA
196 CCCTGAGCAGCAGTGGAGTAGGTTGAAAATAACAGATCTTGTCTTCTTGTACTGGCAGTGAAGTA
58278321 GATCGAAG
261 GATCGAAG
* * *
58278329 ATAGCAGACCTTGTCTTCCTGTATTGGCAGTGAAGTAGATCGAAGATAGTAGATCTTGTCTTCCT
1 ATAGCAGATCTTGTCTTCCTGTACTGGCAGCGAAGTAGATCGAAGATAGTAGATCTTGTCTTCCT
*
58278394 GTATTGGAAGCGAAGTAGATC
66 GTACTGGAAGCGAAGTAGATC
58278415 GAAGTCACAA
Statistics
Matches: 599, Mismatches: 23, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
268 599 1.00
ACGTcount: A:0.29, C:0.18, G:0.25, T:0.29
Consensus pattern (268 bp):
ATAGCAGATCTTGTCTTCCTGTACTGGCAGCGAAGTAGATCGAAGATAGTAGATCTTGTCTTCCT
GTACTGGAAGCGAAGTAGATCAAAAATAGCAGATCTTGTCTTCCTGTATTGGCAGCGAAGTAGAT
CGAAGATAGCAGATCTTGTCTTTCTGTATTGGCAGCAAAGTAGATCGAAGATACCAACCTTATCT
CCCTGAGCAGCAGTGGAGTAGGTTGAAAATAACAGATCTTGTCTTCTTGTACTGGCAGTGAAGTA
GATCGAAG
Found at i:58278470 original size:268 final size:268
Alignment explanation
Indices: 58277525--58278600 Score: 1502
Period size: 268 Copynumber: 4.0 Consensus size: 268
58277515 TAAGTTGAAA
* * *
58277525 ATAGTAGATCTTGTCTTCCTGTACTGGCAGTGAAGTAGATCGAAGGTAGTAGATCTTGTCTTCCT
1 ATAGCAGATCTTGTCTTCCTGTACTGGCAGCGAAGTAGATCGAAGATAGTAGATCTTGTCTTCCT
* *
58277590 GTACTGGAAGCGAAGTAGATCAAAGATAGCAGATCTTGTCTTCCTGTA-TTGACAGCGAAGTAGA
66 GTACTGGAAGCGAAGTAGATCAAAAATAGCAGATCTTGTCTTCCTGTAGTAG-CAGCGAAGTAGA
58277654 TCAAAGATAGCAGATCTTGTCTTTCTGTATTGGCAGCAAAGTAGATCGAAGATACCAACCTTATC
130 TCAAAGATAGCAGATCTTGTCTTTCTGTATTGGCAGCAAAGTAGATCGAAGATACCAACCTTATC
* * *
58277719 TCCCTGAGCAGCAGTGGAGTAGGTTGAAAATAACAGATCTTGTCTTCTTGTACTGGCAGTGAAGT
195 TCCCTGAGCAGCAGTAGAGTAGGTTGAAAATAACAGATCTTGTCTTCCTGTACTGGCAGCGAAGT
58277784 AGATCGAAG
260 AGATCGAAG
58277793 ATAGCAGATCTTGTCTTCCTGTACTGGCAGCGAAGTAGATCGAAGATAGTAGATCTTGTCTTCCT
1 ATAGCAGATCTTGTCTTCCTGTACTGGCAGCGAAGTAGATCGAAGATAGTAGATCTTGTCTTCCT
* * * *
58277858 GTACTGGCAGCGAAGTAGATCAAAAATAGCAGATCTTGTCTTCCTATATTGGCAGCGAAGTAGAT
66 GTACTGGAAGCGAAGTAGATCAAAAATAGCAGATCTTGTCTTCCTGTAGTAGCAGCGAAGTAGAT
*
58277923 CGAAGATAGCAGATCTTGTCTTTCTGTATTGGCAGCAAAGTAGATCGAAGATACCAACCTTATCT
131 CAAAGATAGCAGATCTTGTCTTTCTGTATTGGCAGCAAAGTAGATCGAAGATACCAACCTTATCT
* * *
58277988 CCCTGAGCAGCAGTGGAGTAGGTTGAAAATAACAGATCTTGTCTTCTTGTACTGGCAGTGAAGTA
196 CCCTGAGCAGCAGTAGAGTAGGTTGAAAATAACAGATCTTGTCTTCCTGTACTGGCAGCGAAGTA
58278053 GATCGAAG
261 GATCGAAG
58278061 ATAGCAGATCTTGTCTTCCTGTACTGGCAGCGAAGTAGATCGAAGATAGTAGATCTTGTCTTCCT
1 ATAGCAGATCTTGTCTTCCTGTACTGGCAGCGAAGTAGATCGAAGATAGTAGATCTTGTCTTCCT
* * *
58278126 GTACTGGCAGCGAAGTAGATCAAAAATAGCAGATCTTGTCTTCCTGTATTGGCAGCGAAGTAGAT
66 GTACTGGAAGCGAAGTAGATCAAAAATAGCAGATCTTGTCTTCCTGTAGTAGCAGCGAAGTAGAT
* * * * *
58278191 CGAAGATAGCAGATCTTGCCTTTCTGTACTGGTAGCAAAGTAGATCGAAGATACCAGCCTTATCT
131 CAAAGATAGCAGATCTTGTCTTTCTGTATTGGCAGCAAAGTAGATCGAAGATACCAACCTTATCT
* *
58278256 CCCTGAGCAGCAGTAGAGTAGGTTGAAAATAGCAGATCTTGTATTCCTGTACTGGCAGCGAAGTA
196 CCCTGAGCAGCAGTAGAGTAGGTTGAAAATAACAGATCTTGTCTTCCTGTACTGGCAGCGAAGTA
58278321 GATCGAAG
261 GATCGAAG
* * *
58278329 ATAGCAGACCTTGTCTTCCTGTATTGGCAGTGAAGTAGATCGAAGATAGTAGATCTTGTCTTCCT
1 ATAGCAGATCTTGTCTTCCTGTACTGGCAGCGAAGTAGATCGAAGATAGTAGATCTTGTCTTCCT
* * * * * * * *
58278394 GTATTGGAAGCGAAGTAGATC-GAAGTCA-CA-AGCCTTGTCTCCCTG-AGCAGCAGTGGAGTAG
66 GTACTGGAAGCGAAGTAGATCAAAAAT-AGCAGA-TCTTGTCTTCCTGTAGTAGCAGCGAAGTA-
* * * * * * * * * *
58278455 GTTAAAAAAATAGCAGATTTTGTCTTCCTGTATTAGCAGTAAAGTAGATCAAAGATAGCAGATCT
128 GAT-CAAAGATAGCAGATCTTGTCTTTCTGTATTGGCAGCAAAGTAGATCGAAGATACCA-ACCT
* * * * * * * *
58278520 TGTCTTCCTATATTGGCAGC-G-A-AGTAGATCGAAGATAGCAGATCTTGTCTTCCTGTACTGGT
191 TATCTCCCT-GA---GCAGCAGTAGAGTAGGTTGAAAATAACAGATCTTGTCTTCCTGTACTGGC
*
58278582 AGCGCAGTAGATCGAAG
252 AGCGAAGTAGATCGAAG
58278599 AT
1 AT
58278601 GGCCAATCTT
Statistics
Matches: 742, Mismatches: 56, Indels: 18
0.91 0.07 0.02
Matches are distributed among these distances:
266 11 0.01
267 18 0.02
268 641 0.86
269 11 0.01
270 54 0.07
271 1 0.00
272 1 0.00
273 5 0.01
ACGTcount: A:0.29, C:0.18, G:0.25, T:0.28
Consensus pattern (268 bp):
ATAGCAGATCTTGTCTTCCTGTACTGGCAGCGAAGTAGATCGAAGATAGTAGATCTTGTCTTCCT
GTACTGGAAGCGAAGTAGATCAAAAATAGCAGATCTTGTCTTCCTGTAGTAGCAGCGAAGTAGAT
CAAAGATAGCAGATCTTGTCTTTCTGTATTGGCAGCAAAGTAGATCGAAGATACCAACCTTATCT
CCCTGAGCAGCAGTAGAGTAGGTTGAAAATAACAGATCTTGTCTTCCTGTACTGGCAGCGAAGTA
GATCGAAG
Found at i:58278610 original size:45 final size:45
Alignment explanation
Indices: 58277441--58278600 Score: 1172
Period size: 45 Copynumber: 26.0 Consensus size: 45
58277431 GTAAAGTTAT
* * * * *
58277441 CAGATCTTGTCTTTCTATACTAGCAGCAAAGTAGATCGAAGATAC
1 CAGATCTTGTCTTCCTGTACTGGCAGCGAAGTAGATCGAAGATAG
* * * * * * * *
58277486 CAG-CCTTATCTCCCTGAAC-AGCAG-TAGAGTA-AGTTGAAAATAG
1 CAGATCTTGTCTTCCTGTACTGGCAGCGA-AGTAGA-TCGAAGATAG
* * *
58277529 TAGATCTTGTCTTCCTGTACTGGCAGTGAAGTAGATCGAAGGTAG
1 CAGATCTTGTCTTCCTGTACTGGCAGCGAAGTAGATCGAAGATAG
* * *
58277574 TAGATCTTGTCTTCCTGTACTGGAAGCGAAGTAGATCAAAGATAG
1 CAGATCTTGTCTTCCTGTACTGGCAGCGAAGTAGATCGAAGATAG
* * *
58277619 CAGATCTTGTCTTCCTGTATTGACAGCGAAGTAGATCAAAGATAG
1 CAGATCTTGTCTTCCTGTACTGGCAGCGAAGTAGATCGAAGATAG
* * * *
58277664 CAGATCTTGTCTTTCTGTATTGGCAGCAAAGTAGATCGAAGATAC
1 CAGATCTTGTCTTCCTGTACTGGCAGCGAAGTAGATCGAAGATAG
* * * * * * * * * *
58277709 CA-ACCTTATCTCCCTG-AGC-AGCAGTGGAGTAGGTTGAAAATAA
1 CAGATCTTGTCTTCCTGTA-CTGGCAGCGAAGTAGATCGAAGATAG
* *
58277752 CAGATCTTGTCTTCTTGTACTGGCAGTGAAGTAGATCGAAGATAG
1 CAGATCTTGTCTTCCTGTACTGGCAGCGAAGTAGATCGAAGATAG
58277797 CAGATCTTGTCTTCCTGTACTGGCAGCGAAGTAGATCGAAGATAG
1 CAGATCTTGTCTTCCTGTACTGGCAGCGAAGTAGATCGAAGATAG
* * *
58277842 TAGATCTTGTCTTCCTGTACTGGCAGCGAAGTAGATCAAAAATAG
1 CAGATCTTGTCTTCCTGTACTGGCAGCGAAGTAGATCGAAGATAG
* *
58277887 CAGATCTTGTCTTCCTATATTGGCAGCGAAGTAGATCGAAGATAG
1 CAGATCTTGTCTTCCTGTACTGGCAGCGAAGTAGATCGAAGATAG
* * * *
58277932 CAGATCTTGTCTTTCTGTATTGGCAGCAAAGTAGATCGAAGATAC
1 CAGATCTTGTCTTCCTGTACTGGCAGCGAAGTAGATCGAAGATAG
* * * * * * * * * *
58277977 CA-ACCTTATCTCCCTG-AGC-AGCAGTGGAGTAGGTTGAAAATAA
1 CAGATCTTGTCTTCCTGTA-CTGGCAGCGAAGTAGATCGAAGATAG
* *
58278020 CAGATCTTGTCTTCTTGTACTGGCAGTGAAGTAGATCGAAGATAG
1 CAGATCTTGTCTTCCTGTACTGGCAGCGAAGTAGATCGAAGATAG
58278065 CAGATCTTGTCTTCCTGTACTGGCAGCGAAGTAGATCGAAGATAG
1 CAGATCTTGTCTTCCTGTACTGGCAGCGAAGTAGATCGAAGATAG
* * *
58278110 TAGATCTTGTCTTCCTGTACTGGCAGCGAAGTAGATCAAAAATAG
1 CAGATCTTGTCTTCCTGTACTGGCAGCGAAGTAGATCGAAGATAG
*
58278155 CAGATCTTGTCTTCCTGTATTGGCAGCGAAGTAGATCGAAGATAG
1 CAGATCTTGTCTTCCTGTACTGGCAGCGAAGTAGATCGAAGATAG
* * * * *
58278200 CAGATCTTGCCTTTCTGTACTGGTAGCAAAGTAGATCGAAGATAC
1 CAGATCTTGTCTTCCTGTACTGGCAGCGAAGTAGATCGAAGATAG
* * * * * *
58278245 CAG-CCTTATCTCCCTG-A---GCAGCAGTAGAGTAGGTTGAAAATAG
1 CAGATCTTGTCTTCCTGTACTGGCAGC-G-A-AGTAGATCGAAGATAG
*
58278288 CAGATCTTGTATTCCTGTACTGGCAGCGAAGTAGATCGAAGATAG
1 CAGATCTTGTCTTCCTGTACTGGCAGCGAAGTAGATCGAAGATAG
* * *
58278333 CAGACCTTGTCTTCCTGTATTGGCAGTGAAGTAGATCGAAGATAG
1 CAGATCTTGTCTTCCTGTACTGGCAGCGAAGTAGATCGAAGATAG
* * *
58278378 TAGATCTTGTCTTCCTGTATTGGAAGCGAAGTAGATCGAAG-TCA-
1 CAGATCTTGTCTTCCTGTACTGGCAGCGAAGTAGATCGAAGAT-AG
* * * * * * ** *
58278422 CA-AGCCTTGTCTCCCTG-AGC-AGCAGTGGAGTAGGTTAAAAAAATAG
1 CAGA-TCTTGTCTTCCTGTA-CTGGCAGCGAAGTA-GAT-CGAAGATAG
* * * ** *
58278468 CAGATTTTGTCTTCCTGTATTAGCAGTAAAGTAGATCAAAGATAG
1 CAGATCTTGTCTTCCTGTACTGGCAGCGAAGTAGATCGAAGATAG
* *
58278513 CAGATCTTGTCTTCCTATATTGGCAGCGAAGTAGATCGAAGATAG
1 CAGATCTTGTCTTCCTGTACTGGCAGCGAAGTAGATCGAAGATAG
* *
58278558 CAGATCTTGTCTTCCTGTACTGGTAGCGCAGTAGATCGAAGAT
1 CAGATCTTGTCTTCCTGTACTGGCAGCGAAGTAGATCGAAGAT
58278601 GGCCAATCTT
Statistics
Matches: 918, Mismatches: 165, Indels: 64
0.80 0.14 0.06
Matches are distributed among these distances:
40 4 0.00
42 3 0.00
43 82 0.09
44 96 0.10
45 697 0.76
46 18 0.02
47 13 0.01
48 5 0.01
ACGTcount: A:0.29, C:0.18, G:0.24, T:0.28
Consensus pattern (45 bp):
CAGATCTTGTCTTCCTGTACTGGCAGCGAAGTAGATCGAAGATAG
Found at i:58278697 original size:44 final size:44
Alignment explanation
Indices: 58278649--58278746 Score: 115
Period size: 44 Copynumber: 2.2 Consensus size: 44
58278639 TTAAGCCACT
* * * *
58278649 AATCTTATCTCCCTGAGCAGCAGTAGAATAGGTTAAAGATTGTA
1 AATCTTATCTCCCTAAGCAGCAGTAGAACAGATTAAAGATGGTA
* * * * *
58278693 AATCTTGTCTCCCTAAGCAGTAGTGGAGCAGATTGAAGATGGTA
1 AATCTTATCTCCCTAAGCAGCAGTAGAACAGATTAAAGATGGTA
58278737 AATCTTATCT
1 AATCTTATCT
58278747 TCCCAAGGTA
Statistics
Matches: 44, Mismatches: 10, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
44 44 1.00
ACGTcount: A:0.32, C:0.16, G:0.21, T:0.31
Consensus pattern (44 bp):
AATCTTATCTCCCTAAGCAGCAGTAGAACAGATTAAAGATGGTA
Found at i:58278834 original size:132 final size:132
Alignment explanation
Indices: 58278590--58279126 Score: 772
Period size: 132 Copynumber: 4.1 Consensus size: 132
58278580 GTAGCGCAGT
* * * * * *
58278590 AGATCGAAGATGGCCAATCTTATTTTCCCAAGGTAGTAGGGAAGC-GAATTTAAGCCACTAATCT
1 AGATCGAAGATAGCAAATCCTATCTTCCCAAGGTAGTAGGGAAGCAG-ATTTAAGCCACCAATCC
* * *
58278654 TATCTCCCTGAGCAGCAGTAGAATAGGTTAAAGATTGTAAATCTTGTCTCCCTAAGCAGTAGTGG
65 TATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAGATTGTAAATCTTGTCTCCCTAAGCAGTAGTGG
58278719 AGC
130 AGC
* * * * *
58278722 AGATTGAAGATGGTAAATCTTATCTTCCCAAGGTAGTAGGGAAGCAGATTTAAGCCACCAGTCCT
1 AGATCGAAGATAGCAAATCCTATCTTCCCAAGGTAGTAGGGAAGCAGATTTAAGCCACCAATCCT
* * * *
58278787 ATCTCCCTAAGCAGCAGTGGAGTAGGTTGAAGATTGTAGATCATGTCTCCCTAAACAGTAGTGGA
66 ATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAGATTGTAAATCTTGTCTCCCTAAGCAGTAGTGGA
58278852 GC
131 GC
** * *
58278854 AGATCGAAGGCAGCAAATCCTATCTTCCCAAGGTAGTAGGGAAGCAGATTTAAGCCATCAGTCCT
1 AGATCGAAGATAGCAAATCCTATCTTCCCAAGGTAGTAGGGAAGCAGATTTAAGCCACCAATCCT
* *
58278919 ATCTCCCTGAGCAGCGGTGGAGTAGGTTGAAGATTGTAAATCTTGTCTCCCTAAGCAGTCGTGGA
66 ATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAGATTGTAAATCTTGTCTCCCTAAGCAGTAGTGGA
58278984 GC
131 GC
*
58278986 AGATCGAATG-TAGCAAATCCTATCTTCCCAAGGTAGTAGGGAAGCAGATTTAAACCACCAATCC
1 AGATCGAA-GATAGCAAATCCTATCTTCCCAAGGTAGTAGGGAAGCAGATTTAAGCCACCAATCC
* * * * *
58279050 TTTCTCCCTGAGCAGCAGTGGAGTAGGTAGAAGATTGTAGATCCTGTATCCCTAAGCAGTAGTGG
65 TATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAGATTGTAAATCTTGTCTCCCTAAGCAGTAGTGG
58279115 AGC
130 AGC
58279118 AGATCGAAG
1 AGATCGAAG
58279127 GCAGTGAATC
Statistics
Matches: 365, Mismatches: 38, Indels: 5
0.89 0.09 0.01
Matches are distributed among these distances:
131 1 0.00
132 362 0.99
133 2 0.01
ACGTcount: A:0.30, C:0.20, G:0.25, T:0.25
Consensus pattern (132 bp):
AGATCGAAGATAGCAAATCCTATCTTCCCAAGGTAGTAGGGAAGCAGATTTAAGCCACCAATCCT
ATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAGATTGTAAATCTTGTCTCCCTAAGCAGTAGTGGA
GC
Found at i:58279316 original size:44 final size:43
Alignment explanation
Indices: 58279224--58279402 Score: 132
Period size: 44 Copynumber: 4.0 Consensus size: 43
58279214 AGATCAAGAC
* * * *
58279224 TGAAGATAACCAACCTTATCTCACTGAAGTTACAGT-GGAGCCGGT
1 TGAAGAT-A-CAATCTTATCTC-CTGAAGTTGCAGTGGGAGCAGAT
58279269 TGAAGATATCAATCTTATCTCCTTGAAGTTGCAGTGGGA-CAGAT
1 TGAAGATA-CAATCTTATCTCC-TGAAGTTGCAGTGGGAGCAGAT
* * * * *
58279313 TGAAGTTACAAGTGTTATCTCCCTGAAGTTGTAGT-GGAGTAGAC
1 TGAAGATACAA-TCTTATCT-CCTGAAGTTGCAGTGGGAGCAGAT
* * *
58279357 TGAGGATGGAGAATCTTGTCTCCCTGAAGTTGCAGT-GGAGCAGAT
1 TGAAGAT--ACAATCTTATCT-CCTGAAGTTGCAGTGGGAGCAGAT
58279402 T
1 T
58279403 AAAGCCAATA
Statistics
Matches: 109, Mismatches: 18, Indels: 14
0.77 0.13 0.10
Matches are distributed among these distances:
43 7 0.06
44 59 0.54
45 40 0.37
46 3 0.03
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.29
Consensus pattern (43 bp):
TGAAGATACAATCTTATCTCCTGAAGTTGCAGTGGGAGCAGAT
Found at i:58280763 original size:24 final size:24
Alignment explanation
Indices: 58280563--58280798 Score: 84
Period size: 24 Copynumber: 10.0 Consensus size: 24
58280553 TTTGAATGTT
*
58280563 TATACTTATTATTATTAAATTAATCA
1 TATAC-TATTATT-TTAAATTTATCA
* * * * **
58280589 T-TAATATTA-TCTAAGTGTATTG
1 TATACTATTATTTTAAATTTATCA
* *
58280611 TATATTATTATTTTAGATTTATCA
1 TATACTATTATTTTAAATTTATCA
* **
58280635 TTTTTTATTATTTGT-AATTTATCA
1 TATACTATTATTT-TAAATTTATCA
* * * **
58280659 -ATATTATTATTTTCAATTCATTG
1 TATACTATTATTTTAAATTTATCA
58280682 T-TAAC-ATTATTTTAAATTTATCA
1 TAT-ACTATTATTTTAAATTTATCA
* * *
58280705 TGTA-TATCTACTTCAAATTTATCA
1 TATACTAT-TATTTTAAATTTATCA
*
58280729 T-TAAC-A-T-TTTTAAATTTATTA
1 TAT-ACTATTATTTTAAATTTATCA
**
58280750 TATACTATTATTTTGGATTTATCA
1 TATACTATTATTTTAAATTTATCA
**
58280774 CGTA-TGATTATTTTAGAA-TTATCA
1 TATACT-ATTATTTTA-AATTTATCA
58280798 T
1 T
58280799 CAAAATTTCT
Statistics
Matches: 153, Mismatches: 40, Indels: 36
0.67 0.17 0.16
Matches are distributed among these distances:
21 14 0.09
22 11 0.07
23 46 0.30
24 77 0.50
25 4 0.03
26 1 0.01
ACGTcount: A:0.33, C:0.08, G:0.05, T:0.54
Consensus pattern (24 bp):
TATACTATTATTTTAAATTTATCA
Found at i:58280942 original size:23 final size:23
Alignment explanation
Indices: 58280912--58280955 Score: 70
Period size: 23 Copynumber: 1.9 Consensus size: 23
58280902 ATTGTACATT
*
58280912 CATATATATTATTTGTTTTAACC
1 CATATATATTATTTATTTTAACC
*
58280935 CATATATATTGTTTATTTTAA
1 CATATATATTATTTATTTTAA
58280956 AATTTTGAAC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.32, C:0.09, G:0.05, T:0.55
Consensus pattern (23 bp):
CATATATATTATTTATTTTAACC
Found at i:58282351 original size:125 final size:125
Alignment explanation
Indices: 58282015--58282390 Score: 477
Period size: 126 Copynumber: 3.0 Consensus size: 125
58282005 GGGTTTTTAA
* * *
58282015 GTCCTGGAATAAAAT-ATTTCGAGTTGACGTTTCTGA-TCAAATAGTATAAATTCGCTTCTAGCA
1 GTCCCGGAA-AAAATAATTTTGAGTTGACGTTTCTGAGT-AAATAGTATAAAATCGCTTCTAGCA
* * * * *
58282078 GGATGCCATTTAAGAAGAATTTATGAAATCGTGCCCTCGTGGACACGCTTTTGCTACAGTAG
64 GGATGCTATTTGAGAAGAATTTGTGAAATCGAGCCCTCGTGGACGCGCTTTTGCTACAGTAG
* * *** * * * *
58282140 GTCACGGAAGAAATAATTATTTTTTTGACATTTTTGAGAAAATAGTATAAAATCGCTTGTAGCAG
1 GTCCCGGAAAAAATAATT-TTGAGTTGACGTTTCTGAGTAAATAGTATAAAATCGCTTCTAGCAG
* * *
58282205 GATGCTGTTTGAGAAGAATTTGTGATATCGCGCCCTCGTGGACGCGCTTTTGCTACAGTAG
65 GATGCTATTTGAGAAGAATTTGTGAAATCGAGCCCTCGTGGACGCGCTTTTGCTACAGTAG
* *
58282266 GTCCCGGAAAAAATAATTTTGGGTTGACGTTTCTGAGTAAATAGTGTAAAATCGCTTCTAGCAGG
1 GTCCCGGAAAAAATAATTTTGAGTTGACGTTTCTGAGTAAATAGTATAAAATCGCTTCTAGCAGG
* * * *
58282331 ATGCTATTTGAGAAGAATTTGTGAAATCAAACCGTCGTGGACGCGATTTTGCTACAGTAG
66 ATGCTATTTGAGAAGAATTTGTGAAATCGAGCCCTCGTGGACGCGCTTTTGCTACAGTAG
58282391 CATGTTTGGG
Statistics
Matches: 212, Mismatches: 36, Indels: 6
0.83 0.14 0.02
Matches are distributed among these distances:
124 4 0.02
125 102 0.48
126 106 0.50
ACGTcount: A:0.30, C:0.15, G:0.23, T:0.32
Consensus pattern (125 bp):
GTCCCGGAAAAAATAATTTTGAGTTGACGTTTCTGAGTAAATAGTATAAAATCGCTTCTAGCAGG
ATGCTATTTGAGAAGAATTTGTGAAATCGAGCCCTCGTGGACGCGCTTTTGCTACAGTAG
Found at i:58285675 original size:23 final size:23
Alignment explanation
Indices: 58285640--58285698 Score: 73
Period size: 23 Copynumber: 2.6 Consensus size: 23
58285630 CATTGTTAAC
* * *
58285640 TTAGTTTAGGGTTTTTAAATAAT
1 TTAGGTTAGGGTTTTGAAATAAA
* *
58285663 TTAGGTTAAGGTTTTGAATTAAA
1 TTAGGTTAGGGTTTTGAAATAAA
58285686 TTAGGTTAGGGTT
1 TTAGGTTAGGGTT
58285699 AGGGTCTTTA
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
23 30 1.00
ACGTcount: A:0.29, C:0.00, G:0.24, T:0.47
Consensus pattern (23 bp):
TTAGGTTAGGGTTTTGAAATAAA
Found at i:58285711 original size:29 final size:30
Alignment explanation
Indices: 58285666--58285847 Score: 173
Period size: 33 Copynumber: 6.1 Consensus size: 30
58285656 AAATAATTTA
* *
58285666 GGTTAAGGTTTTGAATTAAATTAGG-TTAG
1 GGTTAGGGTTTTTAATTAAATTAGGATTAG
*
58285695 GGTTAGGGTCTTTAATTAAATTAGGATTAG
1 GGTTAGGGTTTTTAATTAAATTAGGATTAG
* *
58285725 GATTTTTACGGTTTTTAATTAAATTAGG-TTAG
1 G---GTTAGGGTTTTTAATTAAATTAGGATTAG
* * *
58285757 GGTTAGGGTATTTAATT--A--GGGTTTA-
1 GGTTAGGGTTTTTAATTAAATTAGGATTAG
58285782 GGTTAGGGTTTTTAATTAAATTAGGATTAG
1 GGTTAGGGTTTTTAATTAAATTAGGATTAG
*
58285812 GGTTTTTAGTGTTTTTAATTAAATTAGG-TTAG
1 GG---TTAGGGTTTTTAATTAAATTAGGATTAG
58285844 GGTT
1 GGTT
58285848 TTTAATTAGG
Statistics
Matches: 126, Mismatches: 14, Indels: 26
0.76 0.08 0.16
Matches are distributed among these distances:
25 18 0.14
26 3 0.02
27 2 0.02
29 42 0.33
30 7 0.06
32 11 0.09
33 43 0.34
ACGTcount: A:0.27, C:0.01, G:0.26, T:0.46
Consensus pattern (30 bp):
GGTTAGGGTTTTTAATTAAATTAGGATTAG
Found at i:58285771 original size:62 final size:60
Alignment explanation
Indices: 58285672--58285851 Score: 185
Period size: 62 Copynumber: 3.0 Consensus size: 60
58285662 TTTAGGTTAA
* *
58285672 GGTTTTGAATTAAATTAGGTTAGGGTTAGGGTCTTTAATTAAATTAGGATTAGGATTTTTAC
1 GGTTTTTAATTAAATTAGGTTAGGGTTAGGGTATTTAATTAAATTAGG-TTAGG-TTTTTAC
* *
58285734 GGTTTTTAATTAAATTAGGTTAGGGTTAGGGTATTTAATT--A--GGGTTTAGG---TTAG
1 GGTTTTTAATTAAATTAGGTTAGGGTTAGGGTATTTAATTAAATTAGG-TTAGGTTTTTAC
* *
58285788 GGTTTTTAATTAAATTAGGATTAGGGTTTTTAGTGTTTTTAATTAAATTAGGTTAGGGTTTTTA
1 GGTTTTTAATTAAATTAGG-TTAGGG---TTAGGGTATTTAATTAAATTAGGTTA-GGTTTTTA
58285852 ATTAGGGTAT
Statistics
Matches: 98, Mismatches: 8, Indels: 21
0.77 0.06 0.17
Matches are distributed among these distances:
54 22 0.22
55 6 0.06
58 20 0.20
60 2 0.02
61 3 0.03
62 42 0.43
65 3 0.03
ACGTcount: A:0.27, C:0.01, G:0.25, T:0.47
Consensus pattern (60 bp):
GGTTTTTAATTAAATTAGGTTAGGGTTAGGGTATTTAATTAAATTAGGTTAGGTTTTTAC
Found at i:58285775 original size:24 final size:24
Alignment explanation
Indices: 58285746--58285819 Score: 87
Period size: 25 Copynumber: 3.0 Consensus size: 24
58285736 TTTTTAATTA
*
58285746 AATTAGGTTAGGGTTAGGGTATTT
1 AATTAGGTTAGGGTTAGGGTTTTT
58285770 AATTAGGGTTTA-GGTTAGGGTTTTT
1 AATTA-GG-TTAGGGTTAGGGTTTTT
** *
58285795 AATTAAATTAGGATTAGGGTTTTT
1 AATTAGGTTAGGGTTAGGGTTTTT
58285819 A
1 A
58285820 GTGTTTTTAA
Statistics
Matches: 43, Mismatches: 4, Indels: 6
0.81 0.08 0.11
Matches are distributed among these distances:
23 3 0.07
24 18 0.42
25 19 0.44
26 3 0.07
ACGTcount: A:0.27, C:0.00, G:0.28, T:0.45
Consensus pattern (24 bp):
AATTAGGTTAGGGTTAGGGTTTTT
Found at i:58285799 original size:87 final size:84
Alignment explanation
Indices: 58285644--58285847 Score: 266
Period size: 87 Copynumber: 2.4 Consensus size: 84
58285634 GTTAACTTAG
* * * **
58285644 TTTAGGGTTTTTAAATAATTTAGGTTAAGGTTTTGAATTAAATTAGGTTAGGGTTAGGGTCTTTA
1 TTTA-GGTTTTTAATTAAATTAGGTTAGGGTTGGGAATTAAATTAGGTTAGGGTTAGGGTCTTTA
58285709 ATTAAATTAGGATTAGGATT
65 ATTAAATTAGGATTAGGATT
* * *
58285729 TTTACGGTTTTTAATTAAATTAGGTTAGGGTTAGGGTATTTAATTAGGGTTTA-GGTTAGGGTTT
1 TTTA-GGTTTTTAATTAAATTAGGTTAGGGTT-GGGAATTAAATTA-GG-TTAGGGTTAGGGTCT
*
58285793 TTAATTAAATTAGGATTAGGGTT
62 TTAATTAAATTAGGATTAGGATT
58285816 TTTAGTGTTTTTAATTAAATTAGGTTAGGGTT
1 TTTAG-GTTTTTAATTAAATTAGGTTAGGGTT
58285848 TTTAATTAGG
Statistics
Matches: 105, Mismatches: 10, Indels: 6
0.87 0.08 0.05
Matches are distributed among these distances:
85 28 0.27
86 10 0.10
87 64 0.61
88 3 0.03
ACGTcount: A:0.28, C:0.01, G:0.25, T:0.47
Consensus pattern (84 bp):
TTTAGGTTTTTAATTAAATTAGGTTAGGGTTGGGAATTAAATTAGGTTAGGGTTAGGGTCTTTAA
TTAAATTAGGATTAGGATT
Found at i:58285852 original size:81 final size:85
Alignment explanation
Indices: 58285644--58285892 Score: 250
Period size: 87 Copynumber: 3.0 Consensus size: 85
58285634 GTTAACTTAG
* * * * * * *
58285644 TTTAGGGTTTTTAAATAATTTAGGTTAAGGTTTTGAATTAAATTA-GG--TTAGGGTTAGGGTCT
1 TTTACGGTTTTTAATTAAATTAGGTT-AGG-GTTGTATTTAATTAGGGATTTA-GGTTAGGGTTT
58285706 TTAATTAAATTAGGATTAGGATT
63 TTAATTAAATTAGGATTAGGATT
58285729 TTTACGGTTTTTAATTAAATTAGGTTAGGGTTAGGGTATTTAATTAGGG-TTTAGGTTAGGGTTT
1 TTTACGGTTTTTAATTAAATTAGGTTAGGGTT---GTATTTAATTAGGGATTTAGGTTAGGGTTT
*
58285793 TTAATTAAATTAGGATTAGGGTT
63 TTAATTAAATTAGGATTAGGATT
*
58285816 TTTA-GTGTTTTTAATTAAATTAGGTTAGGG-T-T-TTTAATTAGGGTATTTA-ATTA-GGTTTT
1 TTTACG-GTTTTTAATTAAATTAGGTTAGGGTTGTATTTAATTAGGG-ATTTAGGTTAGGGTTTT
*
58285875 TGAATTAATTTAGG-TTAG
64 T-AATTAAATTAGGATTAG
58285893 AGTTAGGGTT
Statistics
Matches: 145, Mismatches: 10, Indels: 22
0.82 0.06 0.12
Matches are distributed among these distances:
81 22 0.15
82 15 0.10
83 6 0.04
84 3 0.02
85 23 0.16
86 11 0.08
87 62 0.43
88 3 0.02
ACGTcount: A:0.28, C:0.01, G:0.24, T:0.47
Consensus pattern (85 bp):
TTTACGGTTTTTAATTAAATTAGGTTAGGGTTGTATTTAATTAGGGATTTAGGTTAGGGTTTTTA
ATTAAATTAGGATTAGGATT
Found at i:58285853 original size:56 final size:53
Alignment explanation
Indices: 58285645--58285855 Score: 176
Period size: 62 Copynumber: 3.8 Consensus size: 53
58285635 TTAACTTAGT
* * * * *
58285645 TTAGGGTTTTTAAATA-ATTTAGGTTAAGGTTTTGAATTAAATTAGGTTAGGG
1 TTAGGGTATTTAATTAGAATTAGGTTAGGGTTTTTAATTAAATTAGGTTAGGG
*
58285697 TTAGGGTCTTTAATTA-AATTAGGATTAGGATTTTTACGGTTTTTAATTAAATTAGGTTAGGG
1 TTAGGGTATTTAATTAGAATTAGG-TTA-G--------GGTTTTTAATTAAATTAGGTTAGGG
**
58285759 TTAGGGTATTTAATTAGGGTTTAGGTTAGGGTTTTTAATTAAATTAGGATTAGGG
1 TTAGGGTATTTAATTA-GAATTAGGTTAGGGTTTTTAATTAAATTAGG-TTAGGG
* *
58285814 TTTTTAGTGTTTTTAATTA-AATTAGGTTAGGGTTTTTAATTA
1 ---TTAGGGTATTTAATTAGAATTAGGTTAGGGTTTTTAATTA
58285856 GGGTATTTAA
Statistics
Matches: 131, Mismatches: 12, Indels: 28
0.77 0.07 0.16
Matches are distributed among these distances:
52 20 0.15
53 3 0.02
54 19 0.15
55 6 0.05
56 21 0.16
58 14 0.11
62 40 0.31
63 3 0.02
64 5 0.04
ACGTcount: A:0.28, C:0.01, G:0.24, T:0.47
Consensus pattern (53 bp):
TTAGGGTATTTAATTAGAATTAGGTTAGGGTTTTTAATTAAATTAGGTTAGGG
Found at i:58285858 original size:13 final size:13
Alignment explanation
Indices: 58285840--58285881 Score: 59
Period size: 13 Copynumber: 3.2 Consensus size: 13
58285830 TTAAATTAGG
58285840 TTAGGGTTTTTAA
1 TTAGGGTTTTTAA
*
58285853 TTAGGGTATTTAA
1 TTAGGGTTTTTAA
58285866 TTA-GGTTTTTGAA
1 TTAGGGTTTTT-AA
58285879 TTA
1 TTA
58285882 ATTTAGGTTA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
12 6 0.23
13 20 0.77
ACGTcount: A:0.26, C:0.00, G:0.21, T:0.52
Consensus pattern (13 bp):
TTAGGGTTTTTAA
Found at i:58285916 original size:67 final size:63
Alignment explanation
Indices: 58285835--58286232 Score: 336
Period size: 61 Copynumber: 6.6 Consensus size: 63
58285825 TTTAATTAAA
*
58285835 TTAGGTTAGGGTTTTTAATTAGGGTATTTAATTAGGTTTTTGAATTAATTTAGGTTAGAGTTAGG
1 TTAGGTTAGGGTTTTTAATTAGGGTATTTAATTAGGTTTTTGAATTAA--T-GGTTAGGGTTAGG
58285900 G
63 G
* * *
58285901 TTAGGTTTAGGGTTTTTAATTAGGGT-TTTGA--A-----TT-AATTTA-GGTTATGGTTAGGG
1 TTAGG-TTAGGGTTTTTAATTAGGGTATTTAATTAGGTTTTTGAATTAATGGTTAGGGTTAGGG
58285955 TTAGGGTTAGGGTTTTTAATTAGGGTATTTAATTAGGTTTTTGAATTAAT--TTA-GGTTAGGG
1 TTA-GGTTAGGGTTTTTAATTAGGGTATTTAATTAGGTTTTTGAATTAATGGTTAGGGTTAGGG
*
58286016 TTAGGGTTAGGGTTTTTAACTAGGGTATTTAATTAGGTTTTTGAATTAAT--TTA-GGTTAGGG
1 TTA-GGTTAGGGTTTTTAATTAGGGTATTTAATTAGGTTTTTGAATTAATGGTTAGGGTTAGGG
* * *
58286077 TTAGGGTTAGGGTTTTTAATTAGGGT-TTTGAATTAGG-----G--TTTA-GGTTAGGATTAAGG
1 TTA-GGTTAGGGTTTTTAATTAGGGTATTT-AATTAGGTTTTTGAATTAATGGTTAGGGTTAGGG
* * * *
58286133 TTAGGGTTAGGGTTTTTAATTAGGGT-TTTGAATTA--ATTTAG-GTT-AGGGTTAGGGTTAGGG
1 TTA-GGTTAGGGTTTTTAATTAGGGTATTT-AATTAGGTTTTTGAATTAATGGTTAGGGTTAGGG
* *
58286193 TTTTTA-ATTAGGGTATTTAATTAGGGTATTTAATTAGGTT
1 ---TTAGGTTAGGGTTTTTAATTAGGGTATTTAATTAGGTT
58286233 AGAGTTTTTA
Statistics
Matches: 287, Mismatches: 16, Indels: 61
0.79 0.04 0.17
Matches are distributed among these distances:
54 38 0.13
55 9 0.03
56 42 0.15
57 1 0.00
58 5 0.02
59 4 0.01
60 17 0.06
61 124 0.43
62 8 0.03
63 9 0.03
64 1 0.00
66 9 0.03
67 20 0.07
ACGTcount: A:0.24, C:0.00, G:0.29, T:0.46
Consensus pattern (63 bp):
TTAGGTTAGGGTTTTTAATTAGGGTATTTAATTAGGTTTTTGAATTAATGGTTAGGGTTAGGG
Found at i:58285979 original size:13 final size:13
Alignment explanation
Indices: 58285961--58286002 Score: 59
Period size: 13 Copynumber: 3.2 Consensus size: 13
58285951 AGGGTTAGGG
58285961 TTAGGGTTTTTAA
1 TTAGGGTTTTTAA
*
58285974 TTAGGGTATTTAA
1 TTAGGGTTTTTAA
58285987 TTA-GGTTTTTGAA
1 TTAGGGTTTTT-AA
58286000 TTA
1 TTA
58286003 ATTTAGGTTA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
12 6 0.23
13 20 0.77
ACGTcount: A:0.26, C:0.00, G:0.21, T:0.52
Consensus pattern (13 bp):
TTAGGGTTTTTAA
Found at i:58286022 original size:61 final size:61
Alignment explanation
Indices: 58285838--58286167 Score: 377
Period size: 61 Copynumber: 5.5 Consensus size: 61
58285828 AATTAAATTA
58285838 GGTTAGGGTTTTTAATTAGGGTATTT-AATTAGGTTTTTGAATTAATTTAGGTTAGAGTTAGGGT
1 GGTTAGGGTTTTTAATTAGGGT-TTTGAATTAGGTTTTTGAATTAA--T---TTAG-GTTAGGGT
58285902 TAG
59 TAG
* * * *
58285905 GTTTAGGGTTTTTAATTAGGGTTTTGAATTA--ATTTAG-GTT-A--T-GGTTAGGGTTAG
1 GGTTAGGGTTTTTAATTAGGGTTTTGAATTAGGTTTTTGAATTAATTTAGGTTAGGGTTAG
58285959 GGTTAGGGTTTTTAATTAGGGTATTT-AATTAGGTTTTTGAATTAATTTAGGTTAGGGTTAG
1 GGTTAGGGTTTTTAATTAGGGT-TTTGAATTAGGTTTTTGAATTAATTTAGGTTAGGGTTAG
*
58286020 GGTTAGGGTTTTTAACTAGGGTATTT-AATTAGGTTTTTGAATTAATTTAGGTTAGGGTTAG
1 GGTTAGGGTTTTTAATTAGGGT-TTTGAATTAGGTTTTTGAATTAATTTAGGTTAGGGTTAG
* ** *
58286081 GGTTAGGGTTTTTAATTAGGGTTTTGAATTAGG-----G-TTTAGGTTAGGATTAAGGTTAG
1 GGTTAGGGTTTTTAATTAGGGTTTTGAATTAGGTTTTTGAATTAATTTAGG-TTAGGGTTAG
58286137 GGTTAGGGTTTTTAATTAGGGTTTTGAATTA
1 GGTTAGGGTTTTTAATTAGGGTTTTGAATTA
58286168 ATTTAGGTTA
Statistics
Matches: 238, Mismatches: 14, Indels: 33
0.84 0.05 0.12
Matches are distributed among these distances:
54 37 0.16
55 12 0.05
56 46 0.19
57 2 0.01
58 1 0.00
60 4 0.02
61 100 0.42
63 1 0.00
64 2 0.01
65 4 0.02
66 3 0.01
67 26 0.11
ACGTcount: A:0.24, C:0.00, G:0.29, T:0.46
Consensus pattern (61 bp):
GGTTAGGGTTTTTAATTAGGGTTTTGAATTAGGTTTTTGAATTAATTTAGGTTAGGGTTAG
Found at i:58286101 original size:13 final size:13
Alignment explanation
Indices: 58286083--58286117 Score: 61
Period size: 13 Copynumber: 2.7 Consensus size: 13
58286073 AGGGTTAGGG
*
58286083 TTAGGGTTTTTAA
1 TTAGGGTTTTGAA
58286096 TTAGGGTTTTGAA
1 TTAGGGTTTTGAA
58286109 TTAGGGTTT
1 TTAGGGTTT
58286118 AGGTTAGGAT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.20, C:0.00, G:0.29, T:0.51
Consensus pattern (13 bp):
TTAGGGTTTTGAA
Found at i:58286124 original size:12 final size:12
Alignment explanation
Indices: 58286065--58286140 Score: 57
Period size: 12 Copynumber: 6.2 Consensus size: 12
58286055 TTTGAATTAA
58286065 TTTAGGTTAGGG
1 TTTAGGTTAGGG
58286077 -TTAGGGTTAGGG
1 TTTA-GGTTAGGG
*
58286089 TTTTTA-ATTAGGG
1 --TTTAGGTTAGGG
* *
58286102 TTTTGAATTAGGG
1 TTTAG-GTTAGGG
*
58286115 TTTAGGTTAGGA
1 TTTAGGTTAGGG
*
58286127 TTAAGGTTAGGG
1 TTTAGGTTAGGG
58286139 TT
1 TT
58286141 AGGGTTTTTA
Statistics
Matches: 51, Mismatches: 7, Indels: 12
0.73 0.10 0.17
Matches are distributed among these distances:
11 6 0.12
12 25 0.49
13 17 0.33
15 3 0.06
ACGTcount: A:0.21, C:0.00, G:0.36, T:0.43
Consensus pattern (12 bp):
TTTAGGTTAGGG
Found at i:58286143 original size:43 final size:42
Alignment explanation
Indices: 58286096--58286188 Score: 125
Period size: 43 Copynumber: 2.2 Consensus size: 42
58286086 GGGTTTTTAA
*
58286096 TTAGGGTTTTGAATTAGGGTTTAG-GTTAGGATTAAGGTTAGGG
1 TTAGGGTTTTGAATTAGGGTTTAGAATTA--ATTAAGGTTAGGG
* * *
58286139 TTAGGGTTTTTAATTAGGGTTTTGAATTAATTTAGGTTAGGG
1 TTAGGGTTTTGAATTAGGGTTTAGAATTAATTAAGGTTAGGG
58286181 TTAGGGTT
1 TTAGGGTT
58286189 AGGGTTTTTA
Statistics
Matches: 45, Mismatches: 4, Indels: 3
0.87 0.08 0.06
Matches are distributed among these distances:
42 20 0.44
43 22 0.49
44 3 0.07
ACGTcount: A:0.23, C:0.00, G:0.33, T:0.44
Consensus pattern (42 bp):
TTAGGGTTTTGAATTAGGGTTTAGAATTAATTAAGGTTAGGG
Found at i:58286157 original size:13 final size:13
Alignment explanation
Indices: 58286139--58286230 Score: 52
Period size: 13 Copynumber: 7.4 Consensus size: 13
58286129 AAGGTTAGGG
*
58286139 TTAGGGTTTTTAA
1 TTAGGGTTTTGAA
58286152 TTAGGGTTTTGAA
1 TTAGGGTTTTGAA
* * *
58286165 TTA--ATTTAG-G
1 TTAGGGTTTTGAA
* **
58286175 TTAGGG-TTAGGG
1 TTAGGGTTTTGAA
*
58286187 TTAGGGTTTTTAA
1 TTAGGGTTTTGAA
58286200 TTAGGGTATTT-AA
1 TTAGGGT-TTTGAA
58286213 TTAGGGTATTT-AA
1 TTAGGGT-TTTGAA
58286226 TTAGG
1 TTAGG
58286231 TTAGAGTTTT
Statistics
Matches: 65, Mismatches: 9, Indels: 10
0.77 0.11 0.12
Matches are distributed among these distances:
10 3 0.05
11 8 0.12
12 7 0.11
13 44 0.68
14 3 0.05
ACGTcount: A:0.25, C:0.00, G:0.28, T:0.47
Consensus pattern (13 bp):
TTAGGGTTTTGAA
Found at i:58286163 original size:104 final size:106
Alignment explanation
Indices: 58285974--58286219 Score: 340
Period size: 104 Copynumber: 2.3 Consensus size: 106
58285964 GGGTTTTTAA
* * * * *
58285974 TTAGGGTATTTAATTAGGTTTTTGAATTA--ATTTAGGTTAGGGTTAGGGTTAGGGTTTTTAACT
1 TTAGGGTTTTTAATTAGGGTTTTGAATTAGGGTTTAGGTTAGGATTAAGGTTAGGG---TT-A-T
*
58286037 AGGGTATTTAATTAGGTTTTTGAATTAATTTAGGTTAGGGTTAGGG
61 AGGGTATTTAATTAGGGTTTTGAATTAATTTAGGTTAGGGTTAGGG
58286083 TTAGGGTTTTTAATTAGGGTTTTGAATTAGGGTTTAGGTTAGGATTAAGGTTAGGG-T-TAGGGT
1 TTAGGGTTTTTAATTAGGGTTTTGAATTAGGGTTTAGGTTAGGATTAAGGTTAGGGTTATAGGGT
*
58286146 TTTTAATTAGGGTTTTGAATTAATTTAGGTTAGGGTTAGGG
66 ATTTAATTAGGGTTTTGAATTAATTTAGGTTAGGGTTAGGG
58286187 TTAGGGTTTTTAATTAGGGTATTT-AATTAGGGT
1 TTAGGGTTTTTAATTAGGGT-TTTGAATTAGGGT
58286220 ATTTAATTAG
Statistics
Matches: 127, Mismatches: 7, Indels: 11
0.88 0.05 0.08
Matches are distributed among these distances:
104 74 0.58
105 3 0.02
107 1 0.01
109 27 0.21
111 22 0.17
ACGTcount: A:0.24, C:0.00, G:0.30, T:0.46
Consensus pattern (106 bp):
TTAGGGTTTTTAATTAGGGTTTTGAATTAGGGTTTAGGTTAGGATTAAGGTTAGGGTTATAGGGT
ATTTAATTAGGGTTTTGAATTAATTTAGGTTAGGGTTAGGG
Done.