Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr09 ID=Chr09-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 70713020
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 1142373 characters in sequence are not A, C, G, or T
File 198 of 226
Found at i:62937635 original size:22 final size:22
Alignment explanation
Indices: 62937610--62938337 Score: 789
Period size: 22 Copynumber: 33.0 Consensus size: 22
62937600 TTTAATTGAC
* *
62937610 AAACCTTAAACCCTTAACCTAA
1 AAACCCTAAACCCTTAACTTAA
*
62937632 AAACGCTAACCCTAACCCTTAACTTAA
1 AAACCCTAA----A-CCCTTAACTTAA
* *
62937659 AACCCCT-AACCCTTAAATTAA
1 AAACCCTAAACCCTTAACTTAA
***
62937680 AAACCCTAAAATATTAACTTAA
1 AAACCCTAAACCCTTAACTTAA
*
62937702 AAACCATAAACCCTTAACTTAA
1 AAACCCTAAACCCTTAACTTAA
62937724 AAACCCT-AACCCTTAACTTAA
1 AAACCCTAAACCCTTAACTTAA
*
62937745 AAACCCCAAACCCTTAACTTAA
1 AAACCCTAAACCCTTAACTTAA
*
62937767 AAACCCTAACCCCTTAACTTAA
1 AAACCCTAAACCCTTAACTTAA
* * *
62937789 AAACCATAAACCTTTAACATAA
1 AAACCCTAAACCCTTAACTTAA
* *
62937811 AACCCCTAAACCCTAAACCTTTAAATTTA
1 AAACCCTAAACCCTTAA-C-TT--A---A
*
62937840 AAACCCTAAACCCTTAAATTAA
1 AAACCCTAAACCCTTAACTTAA
62937862 AAACCCT-AACCCTTAACTTAA
1 AAACCCTAAACCCTTAACTTAA
*
62937883 AAACCCTAAACCCTTAAATTAA
1 AAACCCTAAACCCTTAACTTAA
* *
62937905 AAATCCTAAACCTTTAACTTAA
1 AAACCCTAAACCCTTAACTTAA
*
62937927 AAACCCT-AACCCTTAACTTTA
1 AAACCCTAAACCCTTAACTTAA
62937948 AAACCCT-AACCTCTTAACTTAA
1 AAACCCTAAACC-CTTAACTTAA
*
62937970 AAACCCTAAACCCTTAAATTAA
1 AAACCCTAAACCCTTAACTTAA
* *
62937992 AAATCCTAAACCCTTAAATTAA
1 AAACCCTAAACCCTTAACTTAA
* **
62938014 AAACCTTAAACTTTTAACTTAA
1 AAACCCTAAACCCTTAACTTAA
* * *
62938036 AACCCCT-AACCTTTAACTTTA
1 AAACCCTAAACCCTTAACTTAA
*
62938057 AAACCC-AAACCCTGAAACTTAA
1 AAACCCTAAACCCT-TAACTTAA
*
62938079 AAACCCTAAACCCTTAAATTAA
1 AAACCCTAAACCCTTAACTTAA
* * *
62938101 AAACACTAAACCTTTAAATTAA
1 AAACCCTAAACCCTTAACTTAA
*
62938123 AAACCCTAAACCCTTAAATTAA
1 AAACCCTAAACCCTTAACTTAA
*
62938145 AAACCCTAAACCTTTAACTTAA
1 AAACCCTAAACCCTTAACTTAA
62938167 AAACCCT-AACCCTTAACTTAA
1 AAACCCTAAACCCTTAACTTAA
*
62938188 AAACCCT-AACCCTTAACTTTA
1 AAACCCTAAACCCTTAACTTAA
*
62938209 AAACCCTAAACCTTTAACTTAA
1 AAACCCTAAACCCTTAACTTAA
* * *
62938231 AAATCGT-AACCCTTAAATTAA
1 AAACCCTAAACCCTTAACTTAA
* *
62938252 AAACACTAAACCCTTAACTTTA
1 AAACCCTAAACCCTTAACTTAA
** * * *
62938274 AAACTGT-AACTCTTAAATAAA
1 AAACCCTAAACCCTTAACTTAA
*
62938295 AAACCCT-AACACTTAACTTAA
1 AAACCCTAAACCCTTAACTTAA
62938316 AAACCCT-AACCCTTAACTTAA
1 AAACCCTAAACCCTTAACTTAA
62938337 A
1 A
62938338 TATAATTTGA
Statistics
Matches: 596, Mismatches: 88, Indels: 45
0.82 0.12 0.06
Matches are distributed among these distances:
21 205 0.34
22 340 0.57
23 12 0.02
24 1 0.00
25 1 0.00
26 3 0.01
27 18 0.03
29 16 0.03
ACGTcount: A:0.46, C:0.28, G:0.01, T:0.25
Consensus pattern (22 bp):
AAACCCTAAACCCTTAACTTAA
Found at i:62937650 original size:27 final size:27
Alignment explanation
Indices: 62937618--62937671 Score: 81
Period size: 27 Copynumber: 2.0 Consensus size: 27
62937608 ACAAACCTTA
*
62937618 AACCCTTAACCTAAAAACGCTAACCCT
1 AACCCTTAACCTAAAAACCCTAACCCT
* *
62937645 AACCCTTAACTTAAAACCCCTAACCCT
1 AACCCTTAACCTAAAAACCCTAACCCT
62937672 TAAATTAAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.39, C:0.39, G:0.02, T:0.20
Consensus pattern (27 bp):
AACCCTTAACCTAAAAACCCTAACCCT
Found at i:62937703 original size:43 final size:44
Alignment explanation
Indices: 62937639--62938337 Score: 789
Period size: 43 Copynumber: 16.0 Consensus size: 44
62937629 TAAAAACGCT
*
62937639 AACCCT-AACCCTTAACTTAAAACCCCT-AACCCTTAAATTAAA
1 AACCCTAAACCCTTAACTTAAAAACCCTAAACCCTTAAATTAAA
*** * *
62937681 AACCCTAAAATATTAACTTAAAAACCATAAACCCTTAACTTAAA
1 AACCCTAAACCCTTAACTTAAAAACCCTAAACCCTTAAATTAAA
* *
62937725 AACCCT-AACCCTTAACTTAAAAACCCCAAACCCTTAACTTAAA
1 AACCCTAAACCCTTAACTTAAAAACCCTAAACCCTTAAATTAAA
* * *
62937768 AACCCTAACCCCTTAACTTAAAAACCATAAACCTTTAACA-TAAA
1 AACCCTAAACCCTTAACTTAAAAACCCTAAACCCTTAA-ATTAAA
* *
62937812 ACCCCTAAACCCTAAACCTTTAAATTTAAAACCCTAAACCCTTAAATTAAA
1 AACCCTAAACCCTTAA-C-TT--A---AAAACCCTAAACCCTTAAATTAAA
62937863 AACCCT-AACCCTTAACTTAAAAACCCTAAACCCTTAAATTAAA
1 AACCCTAAACCCTTAACTTAAAAACCCTAAACCCTTAAATTAAA
* * * *
62937906 AATCCTAAACCTTTAACTTAAAAACCCT-AACCCTTAACTTTAA
1 AACCCTAAACCCTTAACTTAAAAACCCTAAACCCTTAAATTAAA
62937949 AACCCT-AACCTCTTAACTTAAAAACCCTAAACCCTTAAATTAAA
1 AACCCTAAACC-CTTAACTTAAAAACCCTAAACCCTTAAATTAAA
* * * ** *
62937993 AATCCTAAACCCTTAAATTAAAAACCTTAAACTTTTAACTTAAA
1 AACCCTAAACCCTTAACTTAAAAACCCTAAACCCTTAAATTAAA
* * * *
62938037 ACCCCT-AACCTTTAACTTTAAAACCC-AAACCCTGAAACTTAAA
1 AACCCTAAACCCTTAACTTAAAAACCCTAAACCCTTAAA-TTAAA
* * *
62938080 AACCCTAAACCCTTAAATTAAAAACACTAAACCTTTAAATTAAA
1 AACCCTAAACCCTTAACTTAAAAACCCTAAACCCTTAAATTAAA
* * *
62938124 AACCCTAAACCCTTAAATTAAAAACCCTAAACCTTTAACTTAAA
1 AACCCTAAACCCTTAACTTAAAAACCCTAAACCCTTAAATTAAA
* *
62938168 AACCCT-AACCCTTAACTTAAAAACCCT-AACCCTTAACTTTAA
1 AACCCTAAACCCTTAACTTAAAAACCCTAAACCCTTAAATTAAA
* * *
62938210 AACCCTAAACCTTTAACTTAAAAATCGT-AACCCTTAAATTAAA
1 AACCCTAAACCCTTAACTTAAAAACCCTAAACCCTTAAATTAAA
* * ** * *
62938253 AACACTAAACCCTTAACTTTAAAACTGT-AACTCTTAAATAAAA
1 AACCCTAAACCCTTAACTTAAAAACCCTAAACCCTTAAATTAAA
* *
62938296 AACCCT-AACACTTAACTTAAAAACCCT-AACCCTTAACTTAAA
1 AACCCTAAACCCTTAACTTAAAAACCCTAAACCCTTAAATTAAA
62938338 TATAATTTGA
Statistics
Matches: 558, Mismatches: 79, Indels: 40
0.82 0.12 0.06
Matches are distributed among these distances:
42 65 0.12
43 235 0.42
44 203 0.36
45 14 0.03
46 3 0.01
48 3 0.01
49 1 0.00
50 9 0.02
51 25 0.04
ACGTcount: A:0.46, C:0.28, G:0.00, T:0.25
Consensus pattern (44 bp):
AACCCTAAACCCTTAACTTAAAAACCCTAAACCCTTAAATTAAA
Found at i:62937732 original size:65 final size:65
Alignment explanation
Indices: 62937639--62938337 Score: 784
Period size: 65 Copynumber: 10.7 Consensus size: 65
62937629 TAAAAACGCT
* * * *
62937639 AACCCT-AACCCTTAACTTAAAACCCCTAACCCTTAAATTAAAAACCCTAAAATATTAACTTAAA
1 AACCCTAAACCCTTAACTTAAAAACCCTAACCCTTAACTTAAAAACCCTAAACTCTTAACTTAAA
* * *
62937703 AACCATAAACCCTTAACTTAAAAACCCTAACCCTTAACTTAAAAACCCCAAACCCTTAACTTAAA
1 AACCCTAAACCCTTAACTTAAAAACCCTAACCCTTAACTTAAAAACCCTAAACTCTTAACTTAAA
* * * * *
62937768 AACCCTAACCCCTTAACTTAAAAACCATAAACCTTTAACATAAAACCCCTAAACCCTAAACCTTT
1 AACCCTAAACCCTTAACTTAAAAACCCT-AACCCTTAACTTAAAAACCCTAAA--CT----C-TT
* *
62937833 AAATTTAA
58 AACTTAAA
* * *
62937841 AACCCTAAACCCTTAAATTAAAAACCCTAACCCTTAACTTAAAAACCCTAAACCCTTAAATTAAA
1 AACCCTAAACCCTTAACTTAAAAACCCTAACCCTTAACTTAAAAACCCTAAACTCTTAACTTAAA
* * * *
62937906 AATCCTAAACCTTTAACTTAAAAACCCTAACCCTTAACTTTAAAACCCTAACCTCTTAACTTAAA
1 AACCCTAAACCCTTAACTTAAAAACCCTAACCCTTAACTTAAAAACCCTAAACTCTTAACTTAAA
* * * * *
62937971 AACCCTAAACCCTTAAATTAAAAATCCTAAACCCTTAAATTAAAAACCTTAAACTTTTAACTTAA
1 AACCCTAAACCCTTAACTTAAAAACCCT-AACCCTTAACTTAAAAACCCTAAACTCTTAACTTAA
62938036 A
65 A
* * * * * * *
62938037 ACCCCT-AACCTTTAACTTTAAAACCCAAACCCTGAAACTTAAAAACCCTAAACCCTTAAATTAA
1 AACCCTAAACCCTTAACTTAAAAACCCTAACCCT-TAACTTAAAAACCCTAAACTCTTAACTTAA
62938101 A
65 A
* * * *
62938102 AACACTAAACCTTTAAATTAAAAACCCTAAACCCTTAAATTAAAAACCCTAAAC-CTTTAACTTA
1 AACCCTAAACCCTTAACTTAAAAACCCT-AACCCTTAACTTAAAAACCCTAAACTC-TTAACTTA
62938166 AA
64 AA
*
62938168 AACCCT-AACCCTTAACTTAAAAACCCTAACCCTTAACTTTAAAACCCTAAAC-CTTTAACTTAA
1 AACCCTAAACCCTTAACTTAAAAACCCTAACCCTTAACTTAAAAACCCTAAACTC-TTAACTTAA
62938231 A
65 A
* * * * * ** * *
62938232 AATCGT-AACCCTTAAATTAAAAACACTAAACCCTTAACTTTAAAACTGT-AACTCTTAAATAAA
1 AACCCTAAACCCTTAACTTAAAAACCCT-AACCCTTAACTTAAAAACCCTAAACTCTTAACTTAA
62938295 A
65 A
*
62938296 AACCCT-AACACTTAACTTAAAAACCCTAACCCTTAACTTAAA
1 AACCCTAAACCCTTAACTTAAAAACCCTAACCCTTAACTTAAA
62938338 TATAATTTGA
Statistics
Matches: 539, Mismatches: 80, Indels: 33
0.83 0.12 0.05
Matches are distributed among these distances:
63 14 0.03
64 102 0.19
65 253 0.47
66 107 0.20
67 6 0.01
68 1 0.00
70 1 0.00
72 22 0.04
73 33 0.06
ACGTcount: A:0.46, C:0.28, G:0.00, T:0.25
Consensus pattern (65 bp):
AACCCTAAACCCTTAACTTAAAAACCCTAACCCTTAACTTAAAAACCCTAAACTCTTAACTTAAA
Found at i:62937852 original size:29 final size:29
Alignment explanation
Indices: 62937789--62937853 Score: 89
Period size: 29 Copynumber: 2.2 Consensus size: 29
62937779 CTTAACTTAA
*
62937789 AAACCATAAACCTTTAACATAAAACCCCT
1 AAACCCTAAACCTTTAACATAAAACCCCT
62937818 AAACCCTAAACCTTTAA-ATTTAAAA-CCCT
1 AAACCCTAAACCTTTAACA--TAAAACCCCT
62937847 AAACCCT
1 AAACCCT
62937854 TAAATTAAAA
Statistics
Matches: 33, Mismatches: 1, Indels: 4
0.87 0.03 0.11
Matches are distributed among these distances:
28 1 0.03
29 27 0.82
30 5 0.15
ACGTcount: A:0.46, C:0.31, G:0.00, T:0.23
Consensus pattern (29 bp):
AAACCCTAAACCTTTAACATAAAACCCCT
Found at i:62938315 original size:26 final size:26
Alignment explanation
Indices: 62938285--62938339 Score: 66
Period size: 21 Copynumber: 2.3 Consensus size: 26
62938275 AACTGTAACT
62938285 CTTAAATAAAAAACCCTAACACTTAA
1 CTTAAATAAAAAACCCTAACACTTAA
*
62938311 C-T---T-AAAAACCCTAACCCTTAA
1 CTTAAATAAAAAACCCTAACACTTAA
62938332 CTTAAATA
1 CTTAAATA
62938340 TAATTTGATA
Statistics
Matches: 23, Mismatches: 1, Indels: 10
0.68 0.03 0.29
Matches are distributed among these distances:
21 18 0.78
22 2 0.09
25 2 0.09
26 1 0.04
ACGTcount: A:0.49, C:0.25, G:0.00, T:0.25
Consensus pattern (26 bp):
CTTAAATAAAAAACCCTAACACTTAA
Found at i:62940467 original size:124 final size:124
Alignment explanation
Indices: 62940306--62940997 Score: 951
Period size: 124 Copynumber: 5.5 Consensus size: 124
62940296 CCCAAACATG
* * *
62940306 CTACTGTAGCAAAAGCGGGTCCATGTGGGTGCGATTTCACAAATTCTTCTCATAAAGCATCCTGC
1 CTACTGTAGCAAAAGCGCGTCCACGTGGGCGCGATTTCACAAATTCTTCTCATAAAGCATCCTGC
* * *
62940371 TAGAAGCGATTTTATACTATTTTCTCAGAAACGTCAAGTCGAAATTATTTTTCCAGGAC
66 TTGAAGCGATTTTATACTATTTGCTCAGAAACGTCAACTCGAAATTATTTTTCCAGGAC
62940430 CTACTGTAGCAAAAGCGCGTCCACGAT-GGCGCGATTTCACAAATTCTTCTCA-AATAGCATCCT
1 CTACTGTAGCAAAAGCGCGTCCACG-TGGGCGCGATTTCACAAATTCTTCTCATAA-AGCATCCT
* * * *
62940493 GCTTGCAGC-ATTGTTTTATACTATTTTCTTAGAAACGTCAACTCGAAATTATTTTTTCAGGAC
64 GCTTGAAGCGA---TTTTATACTATTTGCTCAGAAACGTCAACTCGAAATTATTTTTCCAGGAC
62940556 CTACTGTAGCAAAAGCGCGTCCACGTGGGCGCGATTTCACAAATTCTTCTCATAAAGCATCCTGC
1 CTACTGTAGCAAAAGCGCGTCCACGTGGGCGCGATTTCACAAATTCTTCTCATAAAGCATCCTGC
* * * **
62940621 TAT-AAGTGATTTTATACTATTTGCTTAGAAACATCATGTCGAAATTATTTTTCCAGGAC
66 T-TGAAGCGATTTTATACTATTTGCTCAGAAACGTCAACTCGAAATTATTTTTCCAGGAC
*
62940680 CTACTGTAGCAAAAGCGCGTCCACGAGGGCGCGATTTCACAAATTCTTCTCATAAAGCATCCTGC
1 CTACTGTAGCAAAAGCGCGTCCACGTGGGCGCGATTTCACAAATTCTTCTCATAAAGCATCCTGC
* * *
62940745 TTGAAGCGTTTTTTTAAACTATTTGCTCAGAAACATCAACTCGAAATTATTTCTTCCAGGAC
66 TTGAAGCG--ATTTTATACTATTTGCTCAGAAACGTCAACTCGAAATTATTT-TTCCAGGAC
* * * * * *
62940807 CAACTGTAGCAAAAGTGCGTCCATGAGGGCACGATTTCACAAATTCTTCTCATAAAGCATCCTGG
1 CTACTGTAGCAAAAGCGCGTCCACGTGGGCGCGATTTCACAAATTCTTCTCATAAAGCATCCTGC
** * *
62940872 TTGAAGCTTTTTTAAACTATTTGCTCAAAAACGTCAACTCGAAATTATTTTTCCAGGAC
66 TTGAAGCGATTTTATACTATTTGCTCAGAAACGTCAACTCGAAATTATTTTTCCAGGAC
* * * * * * *
62940931 CTACTATAGCAAAAGCGCGTACACGTGGGCGCGACTTCAAAAATCCTTCTAATAAATCATCCTGC
1 CTACTGTAGCAAAAGCGCGTCCACGTGGGCGCGATTTCACAAATTCTTCTCATAAAGCATCCTGC
62940996 TT
66 TT
62940998 TGATTTTATC
Statistics
Matches: 512, Mismatches: 43, Indels: 26
0.88 0.07 0.04
Matches are distributed among these distances:
123 4 0.01
124 239 0.47
125 42 0.08
126 147 0.29
127 80 0.16
ACGTcount: A:0.29, C:0.23, G:0.17, T:0.31
Consensus pattern (124 bp):
CTACTGTAGCAAAAGCGCGTCCACGTGGGCGCGATTTCACAAATTCTTCTCATAAAGCATCCTGC
TTGAAGCGATTTTATACTATTTGCTCAGAAACGTCAACTCGAAATTATTTTTCCAGGAC
Found at i:62940747 original size:250 final size:251
Alignment explanation
Indices: 62940306--62940997 Score: 1014
Period size: 250 Copynumber: 2.8 Consensus size: 251
62940296 CCCAAACATG
* *
62940306 CTACTGTAGCAAAAGCGGGTCCATGTGGGTGCGATTTCACAAATTCTTCTCATAAAGCATCCTGC
1 CTACTGTAGCAAAAGCGCGTCCATGTGGGCGCGATTTCACAAATTCTTCTCATAAAGCATCCTGC
* * *
62940371 TAGAAGCGATTTTATACTATTTTCTCAGAAACGTCAAGTCGAAATTATTTTTCCAGGACCTACTG
66 TATAAGTGATTTTATACTATTTGCTCAGAAACGTCAAGTCGAAATTATTTTTCCAGGACCTACTG
* *
62940436 TAGCAAAAGCGCGTCCACGATGGCGCGATTTCACAAATTCTTCTCA-AATAGCATCCTGCTTGCA
131 TAGCAAAAGCGCGTCCACGAGGGCGCGATTTCACAAATTCTTCTCATAA-AGCATCCTGCTTGAA
* * * * *
62940500 GCATTGTTTTATACTATTTTCTTAGAAACGTCAACTCGAAATTATTT-TTTCAGGAC
195 GCATTGTTTTAAACTATTTGCTCAGAAACATCAACTCGAAATTATTTCTTCCAGGAC
*
62940556 CTACTGTAGCAAAAGCGCGTCCACGTGGGCGCGATTTCACAAATTCTTCTCATAAAGCATCCTGC
1 CTACTGTAGCAAAAGCGCGTCCATGTGGGCGCGATTTCACAAATTCTTCTCATAAAGCATCCTGC
* * *
62940621 TATAAGTGATTTTATACTATTTGCTTAGAAACATCATGTCGAAATTATTTTTCCAGGACCTACTG
66 TATAAGTGATTTTATACTATTTGCTCAGAAACGTCAAGTCGAAATTATTTTTCCAGGACCTACTG
62940686 TAGCAAAAGCGCGTCCACGAGGGCGCGATTTCACAAATTCTTCTCATAAAGCATCCTGCTTGAAG
131 TAGCAAAAGCGCGTCCACGAGGGCGCGATTTCACAAATTCTTCTCATAAAGCATCCTGCTTGAAG
* *
62940751 CGTTTTTTTAAACTATTTGCTCAGAAACATCAACTCGAAATTATTTCTTCCAGGAC
196 CATTGTTTTAAACTATTTGCTCAGAAACATCAACTCGAAATTATTTCTTCCAGGAC
* * * * *
62940807 CAACTGTAGCAAAAGTGCGTCCATGAGGGCACGATTTCACAAATTCTTCTCATAAAGCATCCTGG
1 CTACTGTAGCAAAAGCGCGTCCATGTGGGCGCGATTTCACAAATTCTTCTCATAAAGCATCCTGC
* * * *
62940872 T-TGAAGCT-TTTTTAAACTATTTGCTCAAAAACGTCAACTCGAAATTATTTTTCCAGGACCTAC
66 TAT-AAG-TGATTTTATACTATTTGCTCAGAAACGTCAAGTCGAAATTATTTTTCCAGGACCTAC
* * * * * * * *
62940935 TATAGCAAAAGCGCGTACACGTGGGCGCGACTTCAAAAATCCTTCTAATAAATCATCCTGCTT
129 TGTAGCAAAAGCGCGTCCACGAGGGCGCGATTTCACAAATTCTTCTCATAAAGCATCCTGCTT
62940998 TGATTTTATC
Statistics
Matches: 399, Mismatches: 39, Indels: 7
0.90 0.09 0.02
Matches are distributed among these distances:
250 222 0.56
251 176 0.44
252 1 0.00
ACGTcount: A:0.29, C:0.23, G:0.17, T:0.31
Consensus pattern (251 bp):
CTACTGTAGCAAAAGCGCGTCCATGTGGGCGCGATTTCACAAATTCTTCTCATAAAGCATCCTGC
TATAAGTGATTTTATACTATTTGCTCAGAAACGTCAAGTCGAAATTATTTTTCCAGGACCTACTG
TAGCAAAAGCGCGTCCACGAGGGCGCGATTTCACAAATTCTTCTCATAAAGCATCCTGCTTGAAG
CATTGTTTTAAACTATTTGCTCAGAAACATCAACTCGAAATTATTTCTTCCAGGAC
Found at i:62942228 original size:63 final size:61
Alignment explanation
Indices: 62942161--62942328 Score: 238
Period size: 59 Copynumber: 2.8 Consensus size: 61
62942151 ACTAAAATCA
* * * *
62942161 TTAATTAAAAATTAGAAAATAAAAAAAATCTTGTAACAATA-TGAAATAAATTAATTAAAAACT
1 TTAATTAAAAATT--AAAATAAAAAAAAGCTT-AAACAAAATTAAAATAAATTAATTAAAAACT
62942224 TTAATTAAAAATTAAAAT--AAAAAAGCTTAAACAAAATTAAAATAAATTAATTAAAAACT
1 TTAATTAAAAATTAAAATAAAAAAAAGCTTAAACAAAATTAAAATAAATTAATTAAAAACT
62942283 TTAATTAAAAATTAAAAT--AAAAAAGCTTAAACAAAATTAAAATAAA
1 TTAATTAAAAATTAAAATAAAAAAAAGCTTAAACAAAATTAAAATAAA
62942329 AAGCTTCAAA
Statistics
Matches: 100, Mismatches: 4, Indels: 6
0.91 0.04 0.05
Matches are distributed among these distances:
58 6 0.06
59 76 0.76
61 5 0.05
63 13 0.13
ACGTcount: A:0.64, C:0.05, G:0.03, T:0.29
Consensus pattern (61 bp):
TTAATTAAAAATTAAAATAAAAAAAAGCTTAAACAAAATTAAAATAAATTAATTAAAAACT
Found at i:62942242 original size:34 final size:34
Alignment explanation
Indices: 62942204--62942303 Score: 112
Period size: 34 Copynumber: 3.2 Consensus size: 34
62942194 TAACAATATG
62942204 AAATAAATTAATTAAAAACTTTAATTAAAAATT-
1 AAATAAATTAATTAAAAACTTTAATTAAAAATTA
*
62942237 --A-AAA-TAA--AAAAGC-TTAA--ACAAAATTA
1 AAATAAATTAATTAAAAACTTTAATTA-AAAATTA
62942263 AAATAAATTAATTAAAAACTTTAATTAAAAATTA
1 AAATAAATTAATTAAAAACTTTAATTAAAAATTA
62942297 AAATAAA
1 AAATAAA
62942304 AAAGCTTAAA
Statistics
Matches: 54, Mismatches: 2, Indels: 21
0.70 0.03 0.27
Matches are distributed among these distances:
24 1 0.02
25 6 0.11
26 4 0.07
27 5 0.09
28 1 0.02
29 6 0.11
30 6 0.11
31 1 0.02
32 5 0.09
33 4 0.07
34 14 0.26
35 1 0.02
ACGTcount: A:0.65, C:0.04, G:0.01, T:0.30
Consensus pattern (34 bp):
AAATAAATTAATTAAAAACTTTAATTAAAAATTA
Found at i:62942275 original size:59 final size:59
Alignment explanation
Indices: 62942204--62942328 Score: 250
Period size: 59 Copynumber: 2.1 Consensus size: 59
62942194 TAACAATATG
62942204 AAATAAATTAATTAAAAACTTTAATTAAAAATTAAAATAAAAAAGCTTAAACAAAATTA
1 AAATAAATTAATTAAAAACTTTAATTAAAAATTAAAATAAAAAAGCTTAAACAAAATTA
62942263 AAATAAATTAATTAAAAACTTTAATTAAAAATTAAAATAAAAAAGCTTAAACAAAATTA
1 AAATAAATTAATTAAAAACTTTAATTAAAAATTAAAATAAAAAAGCTTAAACAAAATTA
62942322 AAATAAA
1 AAATAAA
62942329 AAGCTTCAAA
Statistics
Matches: 66, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
59 66 1.00
ACGTcount: A:0.66, C:0.05, G:0.02, T:0.28
Consensus pattern (59 bp):
AAATAAATTAATTAAAAACTTTAATTAAAAATTAAAATAAAAAAGCTTAAACAAAATTA
Found at i:62942334 original size:24 final size:26
Alignment explanation
Indices: 62942290--62942341 Score: 90
Period size: 25 Copynumber: 2.1 Consensus size: 26
62942280 ACTTTAATTA
62942290 AAAATTAAAATAAAAAAGCTT-AAAC
1 AAAATTAAAATAAAAAAGCTTCAAAC
62942315 AAAATTAAAAT-AAAAAGCTTCAAAC
1 AAAATTAAAATAAAAAAGCTTCAAAC
62942340 AA
1 AA
62942342 CATGAATAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
24 9 0.35
25 17 0.65
ACGTcount: A:0.67, C:0.10, G:0.04, T:0.19
Consensus pattern (26 bp):
AAAATTAAAATAAAAAAGCTTCAAAC
Found at i:62942353 original size:24 final size:23
Alignment explanation
Indices: 62942298--62942354 Score: 69
Period size: 24 Copynumber: 2.4 Consensus size: 23
62942288 TAAAAATTAA
*
62942298 AATAAAAAAGCTTAAACAAAATT
1 AATAAAAAAGCTTAAACAAAATG
* *
62942321 AAAATAAAAAGCTTCAAACAACATG
1 AATA-AAAAAGCTT-AAACAAAATG
62942346 AATAAAAAA
1 AATAAAAAA
62942355 AAAAGATCCA
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
23 3 0.11
24 14 0.50
25 11 0.39
ACGTcount: A:0.67, C:0.11, G:0.05, T:0.18
Consensus pattern (23 bp):
AATAAAAAAGCTTAAACAAAATG
Found at i:62942354 original size:25 final size:23
Alignment explanation
Indices: 62942301--62942355 Score: 65
Period size: 25 Copynumber: 2.3 Consensus size: 23
62942291 AAATTAAAAT
*
62942301 AAAAAAGCTTAAACAAAATTAAA
1 AAAAAAGCTTAAACAAAATGAAA
*
62942324 ATAAAAAGCTTCAAACAACATGAATA
1 A-AAAAAGCTT-AAACAAAATGAA-A
62942350 AAAAAA
1 AAAAAA
62942356 AAAGATCCAA
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
23 1 0.04
24 9 0.33
25 15 0.56
26 2 0.07
ACGTcount: A:0.67, C:0.11, G:0.05, T:0.16
Consensus pattern (23 bp):
AAAAAAGCTTAAACAAAATGAAA
Found at i:62943611 original size:3 final size:3
Alignment explanation
Indices: 62943603--62943653 Score: 102
Period size: 3 Copynumber: 17.0 Consensus size: 3
62943593 TGAAAACTAT
62943603 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
62943651 ATA
1 ATA
62943654 GTAACGAAGT
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 48 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:62945551 original size:44 final size:44
Alignment explanation
Indices: 62945490--62945915 Score: 189
Period size: 44 Copynumber: 9.7 Consensus size: 44
62945480 ACTGGATGCG
* *
62945490 ATCTACTCTACTGCAACTTCAGAGAGATAAGATCTGTTGTTTTA
1 ATCTGCTCCACTGCAACTTCAGAGAGATAAGATCTGTTGTTTTA
* * * * *
62945534 ATCCGCTCCACTGCAACTTCAGGGAGATAGGAT-TAGCTTCTTCT-
1 ATCTGCTCCACTGCAACTTCAGAGAGATAAGATCT-G-TTGTTTTA
* * ** *
62945578 GTCTGCTCCACTGCAACTTCAGGGAGATAAGAT-TCGTCATCTTCA
1 ATCTGCTCCACTGCAACTTCAGAGAGATAAGATCT-GTTGT-TTTA
* * * *
62945623 ATCTGC-CCTACTGCAACTTTAGGGGGATAAGATCTGTT-TGCTTA
1 ATCTGCTCC-ACTGCAACTTCAGAGAGATAAGATCTGTTGT-TTTA
* ** * * **
62945667 GTCTGCTCTGCTGCAACTTCAGAGTGATAAGA-CTAGATG---CG
1 ATCTGCTCCACTGCAACTTCAGAGAGATAAGATCT-GTTGTTTTA
* * **
62945708 ATCTGCT-CTCTGCAACTTCAGAGAGATAAGATCTATCATTTTA
1 ATCTGCTCCACTGCAACTTCAGAGAGATAAGATCTGTTGTTTTA
* * * * * *
62945751 ATCCGCTCCACTACAACTTCAGGGAGATAGGAT-TATTGGCTTTA
1 ATCTGCTCCACTGCAACTTCAGAGAGATAAGATCTGTT-GTTTTA
* * * *** *
62945795 ATCTACTCCACTACAACTTTA-AGGAGATAAGA-CTTGCCATCTTCA
1 ATCTGCTCCACTGCAACTTCAGA-GAGATAAGATC-TGTTGT-TTTA
* * * * * * * *
62945840 ATCCGTTCCATTGCAACTTCAGGGAGATAGGAT-TATTGGCTTCA
1 ATCTGCTCCACTGCAACTTCAGAGAGATAAGATCTGTT-GTTTTA
*
62945884 ATCTGCTCCGCTGCAACTTCA-AGGAGATAAGA
1 ATCTGCTCCACTGCAACTTCAGA-GAGATAAGA
62945916 CTTGCCATCT
Statistics
Matches: 280, Mismatches: 79, Indels: 46
0.69 0.20 0.11
Matches are distributed among these distances:
40 21 0.08
41 8 0.03
43 14 0.05
44 174 0.62
45 62 0.22
46 1 0.00
ACGTcount: A:0.27, C:0.23, G:0.19, T:0.31
Consensus pattern (44 bp):
ATCTGCTCCACTGCAACTTCAGAGAGATAAGATCTGTTGTTTTA
Found at i:62945681 original size:89 final size:88
Alignment explanation
Indices: 62945454--62945698 Score: 243
Period size: 89 Copynumber: 2.8 Consensus size: 88
62945444 CTTCTGTCCA
** * *
62945454 CTCCACTGCAACTTTAGGGAGATAAGA-CTGGATGC-GA-TCTACTCTACTGCAACTTCAGAGAG
1 CTCCACTGCAACTTTAGGGAGATAAGATCTGCTTGCTTAGTCTGCTCTACTGCAACTTCAGAGAG
** *
62945516 ATAAGATCTGTTGTTTTAATCCG
66 ATAAGATCTGTCATTTCAATCCG
* * * * *
62945539 CTCCACTGCAACTTCAGGGAGATAGGAT-TAGCTT-CTTCTGTCTGCTCCACTGCAACTTCAGGG
1 CTCCACTGCAACTTTAGGGAGATAAGATCT-GCTTGCTT-AGTCTGCTCTACTGCAACTTCAGAG
*
62945602 AGATAAGAT-TCGTCATCTTCAATCTG
64 AGATAAGATCT-GTCAT-TTCAATCCG
* * * *
62945628 C-CCTACTGCAACTTTAGGGGGATAAGATCTGTTTGCTTAGTCTGCTCTGCTGCAACTTCAGAGT
1 CTCC-ACTGCAACTTTAGGGAGATAAGATCTGCTTGCTTAGTCTGCTCTACTGCAACTTCAGAGA
62945692 GATAAGA
65 GATAAGA
62945699 CTAGATGCGA
Statistics
Matches: 128, Mismatches: 22, Indels: 16
0.77 0.13 0.10
Matches are distributed among these distances:
85 27 0.21
86 2 0.02
87 1 0.01
88 34 0.27
89 60 0.47
90 4 0.03
ACGTcount: A:0.25, C:0.23, G:0.22, T:0.30
Consensus pattern (88 bp):
CTCCACTGCAACTTTAGGGAGATAAGATCTGCTTGCTTAGTCTGCTCTACTGCAACTTCAGAGAG
ATAAGATCTGTCATTTCAATCCG
Found at i:62945838 original size:217 final size:217
Alignment explanation
Indices: 62945454--62945917 Score: 573
Period size: 217 Copynumber: 2.1 Consensus size: 217
62945444 CTTCTGTCCA
* * * *
62945454 CTCCACTGCAACTTTAGGGAGATAAGACTGGATGCGATCTACTCTACTGCAACTTCAGAGAGATA
1 CTCCGCTGCAACTTCAGAGAGATAAGACTAGATGCGATCTACTCTACTGCAACTTCAGAGAGATA
* ** * * *
62945519 AGATCTGTTGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTAGCTTCTTCTGTCTGC
66 AGATCTATCATTTTAATCCGCTCCACTACAACTTCAGGGAGATAGGATTA-CTTCTTCTATCTAC
* * * * * *
62945584 TCCACTGCAACTTCAGGGAGATAAGATTCGTCATCTTCAATCTG-CCCTACTGCAACTTTAGGGG
130 TCCACTACAACTTCAAGGAGATAAGATTCGCCATCTTCAATCCGTCCC-ACTGCAACTTCAGGGA
* * *
62945648 GATAAGATCTGTTTGCTT-AGTCTG
194 GATAAGAT-TATTGGCTTCAATCTG
* * *
62945672 CTCTGCTGCAACTTCAGAGTGATAAGACTAGATGCGATCTGCTCT-CTGCAACTTCAGAGAGATA
1 CTCCGCTGCAACTTCAGAGAGATAAGACTAGATGCGATCTACTCTACTGCAACTTCAGAGAGATA
62945736 AGATCTATCATTTTAATCCGCTCCACTACAACTTCAGGGAGATAGGATTA-TTGGCTT-TAATCT
66 AGATCTATCATTTTAATCCGCTCCACTACAACTTCAGGGAGATAGGATTACTT--CTTCT-ATCT
* * *
62945799 ACTCCACTACAACTTTAAGGAGATAAGACTT-GCCATCTTCAATCCGTTCCATTGCAACTTCAGG
128 ACTCCACTACAACTTCAAGGAGATAAGA-TTCGCCATCTTCAATCCGTCCCACTGCAACTTCAGG
*
62945863 GAGATAGGATTATTGGCTTCAATCTG
192 GAGATAAGATTATTGGCTTCAATCTG
62945889 CTCCGCTGCAACTTCA-AGGAGATAAGACT
1 CTCCGCTGCAACTTCAGA-GAGATAAGACT
62945918 TGCCATCTTC
Statistics
Matches: 211, Mismatches: 28, Indels: 15
0.83 0.11 0.06
Matches are distributed among these distances:
215 2 0.01
216 9 0.04
217 158 0.75
218 42 0.20
ACGTcount: A:0.27, C:0.23, G:0.20, T:0.30
Consensus pattern (217 bp):
CTCCGCTGCAACTTCAGAGAGATAAGACTAGATGCGATCTACTCTACTGCAACTTCAGAGAGATA
AGATCTATCATTTTAATCCGCTCCACTACAACTTCAGGGAGATAGGATTACTTCTTCTATCTACT
CCACTACAACTTCAAGGAGATAAGATTCGCCATCTTCAATCCGTCCCACTGCAACTTCAGGGAGA
TAAGATTATTGGCTTCAATCTG
Found at i:62945870 original size:89 final size:88
Alignment explanation
Indices: 62945750--62945962 Score: 318
Period size: 89 Copynumber: 2.4 Consensus size: 88
62945740 CTATCATTTT
* * *
62945750 AATCCGCTCCACTACAACTTCAGGGAGATAGGATTATTGGCTTTAATCTACTCCACTACAACTTT
1 AATCCGCTCCA-TTCAACTTCAGGGAGATAGGATTATTGGCTTCAATCTACTCCACTACAACTTC
62945815 AAGGAGATAAGACTTGCCATCTTC
65 AAGGAGATAAGACTTGCCATCTTC
* * * *
62945839 AATCCGTTCCATTGCAACTTCAGGGAGATAGGATTATTGGCTTCAATCTGCTCCGCTGCAACTTC
1 AATCCGCTCCATT-CAACTTCAGGGAGATAGGATTATTGGCTTCAATCTACTCCACTACAACTTC
62945904 AAGGAGATAAGACTTGCCATCTTC
65 AAGGAGATAAGACTTGCCATCTTC
* *
62945928 AATCCGCTCTACTTCAACTTCAGGGAAATAGGATT
1 AATCCGCTCCA-TTCAACTTCAGGGAGATAGGATT
62945963 TGTGGTTTTA
Statistics
Matches: 112, Mismatches: 10, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
88 1 0.01
89 109 0.97
90 2 0.02
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.29
Consensus pattern (88 bp):
AATCCGCTCCATTCAACTTCAGGGAGATAGGATTATTGGCTTCAATCTACTCCACTACAACTTCA
AGGAGATAAGACTTGCCATCTTC
Found at i:62946839 original size:26 final size:26
Alignment explanation
Indices: 62946810--62946863 Score: 81
Period size: 26 Copynumber: 2.1 Consensus size: 26
62946800 AGTATCTTGA
* *
62946810 AAAGAACAAAGTATTCCAAGAGCAAC
1 AAAGAACAAAATATTCCAAGAACAAC
*
62946836 AAAGAATAAAATATTCCAAGAACAAC
1 AAAGAACAAAATATTCCAAGAACAAC
62946862 AA
1 AA
62946864 GTAATATGAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.59, C:0.17, G:0.11, T:0.13
Consensus pattern (26 bp):
AAAGAACAAAATATTCCAAGAACAAC
Found at i:62958241 original size:26 final size:26
Alignment explanation
Indices: 62958202--62958252 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
62958192 AATTTGGCAT
62958202 AAAATATATAAATAATTAA-AATAATG
1 AAAATATATAAATAA-TAATAATAATG
62958228 AAAACTATAT-AATAATAATAATAAT
1 AAAA-TATATAAATAATAATAATAAT
62958253 AGTAACGAAG
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
25 3 0.13
26 15 0.65
27 5 0.22
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.31
Consensus pattern (26 bp):
AAAATATATAAATAATAATAATAATG
Found at i:62962421 original size:2 final size:2
Alignment explanation
Indices: 62962416--62962444 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
62962406 AAAATTACTC
62962416 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
62962445 ATGATAAAAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:62963198 original size:2 final size:2
Alignment explanation
Indices: 62963191--62963231 Score: 82
Period size: 2 Copynumber: 20.5 Consensus size: 2
62963181 TGTAATATGT
62963191 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
62963232 GATAAGTGTA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 39 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:62963274 original size:6 final size:6
Alignment explanation
Indices: 62963263--62963288 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
62963253 TTTAAGTAAA
62963263 TAAAAT TAAAAT TAAAAT TAAAAT TA
1 TAAAAT TAAAAT TAAAAT TAAAAT TA
62963289 TTATGAACGA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (6 bp):
TAAAAT
Found at i:62965795 original size:19 final size:19
Alignment explanation
Indices: 62965768--62965804 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
62965758 AAAATATACC
*
62965768 AACATTTATATACCAACAA
1 AACAATTATATACCAACAA
62965787 AACAATTATATACCAACA
1 AACAATTATATACCAACA
62965805 TTGGCTAAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.54, C:0.22, G:0.00, T:0.24
Consensus pattern (19 bp):
AACAATTATATACCAACAA
Found at i:62966332 original size:24 final size:25
Alignment explanation
Indices: 62966305--62966368 Score: 85
Period size: 25 Copynumber: 2.6 Consensus size: 25
62966295 GTACTTGTAT
62966305 GCTCATACGAGCTGTA-AACGGAAA
1 GCTCATACGAGCTGTATAACGGAAA
*
62966329 GCTCATACGAGCTGAATAACGGAAA
1 GCTCATACGAGCTGTATAACGGAAA
* * *
62966354 TCTCATGCAAGCTGT
1 GCTCATACGAGCTGT
62966369 GGTGTGTCCA
Statistics
Matches: 34, Mismatches: 5, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
24 15 0.44
25 19 0.56
ACGTcount: A:0.34, C:0.22, G:0.23, T:0.20
Consensus pattern (25 bp):
GCTCATACGAGCTGTATAACGGAAA
Found at i:62966358 original size:25 final size:24
Alignment explanation
Indices: 62966305--62966359 Score: 83
Period size: 24 Copynumber: 2.2 Consensus size: 24
62966295 GTACTTGTAT
*
62966305 GCTCATACGAGCTGTAAACGGAAA
1 GCTCATACGAGCTGAAAACGGAAA
62966329 GCTCATACGAGCTGAATAACGGAAA
1 GCTCATACGAGCTGAA-AACGGAAA
*
62966354 TCTCAT
1 GCTCAT
62966360 GCAAGCTGTG
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
24 15 0.54
25 13 0.46
ACGTcount: A:0.36, C:0.22, G:0.22, T:0.20
Consensus pattern (24 bp):
GCTCATACGAGCTGAAAACGGAAA
Found at i:62972204 original size:2 final size:2
Alignment explanation
Indices: 62972199--62972224 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
62972189 TATATATATA
62972199 AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG
62972225 GCAGAAAGCT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
AG
Found at i:62972535 original size:14 final size:16
Alignment explanation
Indices: 62972516--62972548 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
62972506 AAACTATAAG
62972516 TTAAATA-AA-TTAGA
1 TTAAATATAAGTTAGA
62972530 TTAAATATAAGTTAGA
1 TTAAATATAAGTTAGA
62972546 TTA
1 TTA
62972549 CTGATTTCTT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 7 0.41
15 2 0.12
16 8 0.47
ACGTcount: A:0.52, C:0.00, G:0.09, T:0.39
Consensus pattern (16 bp):
TTAAATATAAGTTAGA
Found at i:62972766 original size:28 final size:28
Alignment explanation
Indices: 62972720--62972777 Score: 75
Period size: 28 Copynumber: 2.1 Consensus size: 28
62972710 ACTTCGTACA
*
62972720 TTTAAAATTTAATCTTC-TTACTTTTATT
1 TTTAAAATTTAAACTTCTTTAC-TTTATT
62972748 TTTAAGAATTTAAAC-TCTTTACTTTATT
1 TTTAA-AATTTAAACTTCTTTACTTTATT
62972776 TT
1 TT
62972778 GTTTTAAAAA
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
28 15 0.56
29 12 0.44
ACGTcount: A:0.29, C:0.10, G:0.02, T:0.59
Consensus pattern (28 bp):
TTTAAAATTTAAACTTCTTTACTTTATT
Found at i:62974687 original size:42 final size:42
Alignment explanation
Indices: 62974628--62974738 Score: 170
Period size: 42 Copynumber: 2.6 Consensus size: 42
62974618 ATGACCTAGA
62974628 CACACGCCCATGTCCTTGCCTGTGTGGCTCACA-AGGCCTGGG
1 CACACGCCCATGTCCTTGCCTGTGTGGCTCACATA-GCCTGGG
* *
62974670 CACACGCTCATGTCCTTGCCTGTGTAGCTCACATAGCCTGGG
1 CACACGCCCATGTCCTTGCCTGTGTGGCTCACATAGCCTGGG
*
62974712 CACACGCCCATGTCATCTGCCTGTGTG
1 CACACGCCCATGTCCT-TGCCTGTGTG
62974739 ATTCTAAATC
Statistics
Matches: 62, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
42 52 0.84
43 10 0.16
ACGTcount: A:0.15, C:0.35, G:0.25, T:0.24
Consensus pattern (42 bp):
CACACGCCCATGTCCTTGCCTGTGTGGCTCACATAGCCTGGG
Found at i:62974790 original size:147 final size:147
Alignment explanation
Indices: 62974565--62974831 Score: 367
Period size: 147 Copynumber: 1.8 Consensus size: 147
62974555 CACGGCCTGA
* * * *
62974565 CACACGCCCATGTCGTCTACCCGTGTGGTTCTAAATCGTAAACAATGAGTTACATGACCTAGACA
1 CACACGCCCATGTCATCTACCCGTGTGATTCTAAATCATAAACAATGAGTTACACGACCTAGACA
* * * * *
62974630 CACGCCCATGTCCTTGCCTGTGTGGCTCACA-AGGCCTGGGCACACGCTCATGTCCTTGCCTGTG
66 CACGCCCATGTCCTTGCCCGTATGGCTCACACA-GCCTAGGCACACACCCATGTCCTTGCCTGTG
62974694 TAGCTCACATAGCCTGGG
130 TAGCTCACATAGCCTGGG
* * * * *
62974712 CACACGCCCATGTCATCTGCCTGTGTGATTCTAAATCATAAA-AAGTGAGTTACACGGCTTGGAC
1 CACACGCCCATGTCATCTACCCGTGTGATTCTAAATCATAAACAA-TGAGTTACACGACCTAGAC
*
62974776 ACACGCCTATGTCCTTGCCCGTATGGCTCACACAGCCTAGGCACACACCCATGTCC
65 ACACGCCCATGTCCTTGCCCGTATGGCTCACACAGCCTAGGCACACACCCATGTCC
62974832 CTGGCCATGT
Statistics
Matches: 103, Mismatches: 15, Indels: 4
0.84 0.12 0.03
Matches are distributed among these distances:
146 2 0.02
147 100 0.97
148 1 0.01
ACGTcount: A:0.23, C:0.32, G:0.21, T:0.24
Consensus pattern (147 bp):
CACACGCCCATGTCATCTACCCGTGTGATTCTAAATCATAAACAATGAGTTACACGACCTAGACA
CACGCCCATGTCCTTGCCCGTATGGCTCACACAGCCTAGGCACACACCCATGTCCTTGCCTGTGT
AGCTCACATAGCCTGGG
Found at i:62974892 original size:104 final size:105
Alignment explanation
Indices: 62974670--62974897 Score: 289
Period size: 104 Copynumber: 2.2 Consensus size: 105
62974660 AAGGCCTGGG
* * * * * * * *
62974670 CACACGCTCATGTCCTTGCCTGTGTAGCTCACATAGCCTGGGCACACGCCCATGTCATCTGCCTG
1 CACACGCCCATGTCCTTGCCCGTATAGCTCACACAGCCTAGGCACACACCCATGTCACCTGCCTA
* * *
62974735 TGTGATTCTAAATCATAAAAAGTGAGTTACACGGCTTGGA
66 TGTGATCCTAAATCATAAAAAGTGAGTTACACGGCCTAGA
* *
62974775 CACACGCCTATGTCCTTGCCCGTATGGCTCACACAGCCTAGGCACACACCCATGTC-CCTGGCC-
1 CACACGCCCATGTCCTTGCCCGTATAGCTCACACAGCCTAGGCACACACCCATGTCACCT-GCCT
* * *
62974838 ATGTGCTCCTAAATCATAAACAGTGAGTTACACGGCCTATA
65 ATGTGATCCTAAATCATAAAAAGTGAGTTACACGGCCTAGA
62974879 CACACGCCCATGTCCTTGC
1 CACACGCCCATGTCCTTGC
62974898 TCGTGTGAAC
Statistics
Matches: 105, Mismatches: 17, Indels: 3
0.84 0.14 0.02
Matches are distributed among these distances:
104 54 0.51
105 51 0.49
ACGTcount: A:0.24, C:0.32, G:0.20, T:0.24
Consensus pattern (105 bp):
CACACGCCCATGTCCTTGCCCGTATAGCTCACACAGCCTAGGCACACACCCATGTCACCTGCCTA
TGTGATCCTAAATCATAAAAAGTGAGTTACACGGCCTAGA
Found at i:62983044 original size:13 final size:14
Alignment explanation
Indices: 62983026--62983058 Score: 50
Period size: 13 Copynumber: 2.4 Consensus size: 14
62983016 TTTTTCCATA
62983026 TTAATTATT-TATT
1 TTAATTATTCTATT
*
62983039 TTAATTATTCTTTT
1 TTAATTATTCTATT
62983053 TTAATT
1 TTAATT
62983059 TATAGATCTA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 9 0.50
14 9 0.50
ACGTcount: A:0.27, C:0.03, G:0.00, T:0.70
Consensus pattern (14 bp):
TTAATTATTCTATT
Found at i:62986579 original size:25 final size:25
Alignment explanation
Indices: 62986545--62986647 Score: 102
Period size: 25 Copynumber: 4.1 Consensus size: 25
62986535 TCATGTACAT
* *
62986545 GTATGCTCATACGAGCTGTGAATCA
1 GTATGCTCATACGAGCTATAAATCA
** *
62986570 GTATGCTCATTTGAGCTA-AAGATCG
1 GTATGCTCATACGAGCTATAA-ATCA
* *
62986595 GTATGCTC-TCACGAGCTATGAATCG
1 GTATGCTCAT-ACGAGCTATAAATCA
*
62986620 GTATGCTCTTACGAGCTATAAATCA
1 GTATGCTCATACGAGCTATAAATCA
62986645 GTA
1 GTA
62986648 ACCCTAATGA
Statistics
Matches: 64, Mismatches: 10, Indels: 8
0.78 0.12 0.10
Matches are distributed among these distances:
24 2 0.03
25 60 0.94
26 2 0.03
ACGTcount: A:0.28, C:0.19, G:0.22, T:0.30
Consensus pattern (25 bp):
GTATGCTCATACGAGCTATAAATCA
Found at i:62998001 original size:15 final size:15
Alignment explanation
Indices: 62997981--62998019 Score: 69
Period size: 15 Copynumber: 2.6 Consensus size: 15
62997971 ACTTAAGTAT
62997981 AAATCATTTGAGCCC
1 AAATCATTTGAGCCC
62997996 AAATCATTTGAGCCC
1 AAATCATTTGAGCCC
*
62998011 TAATCATTT
1 AAATCATTT
62998020 ATGTCCAATC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
15 23 1.00
ACGTcount: A:0.33, C:0.23, G:0.10, T:0.33
Consensus pattern (15 bp):
AAATCATTTGAGCCC
Found at i:63007166 original size:45 final size:45
Alignment explanation
Indices: 63007108--63007325 Score: 214
Period size: 45 Copynumber: 4.9 Consensus size: 45
63007098 AATTACACTG
* *
63007108 TGGAATCAACACTTAGCAACCACCTTTATATTCAAGGTTATCCGA
1 TGGAATCAGCACTTAGCAACCACCTTTATATTCAAGGATATCCGA
* * *
63007153 TGGAACCAGCACTTAGCAACCACC-TTACT-TACATGGATATCC-A
1 TGGAATCAGCACTTAGCAACCACCTTTA-TATTCAAGGATATCCGA
* ** *
63007196 GTGGAATCAGCACTTAGCAACCACCTTTATATTCGAGGATATTTGG
1 -TGGAATCAGCACTTAGCAACCACCTTTATATTCAAGGATATCCGA
* * * * *
63007242 TGGAATTAGCACTTAACAACCACC--TACT-TACATGGATATCCGG
1 TGGAATCAGCACTTAGCAACCACCTTTA-TATTCAAGGATATCCGA
* * *
63007285 TGGAATTAGCGCTTAGCAACCACCTTTATATTCGAGGATAT
1 TGGAATCAGCACTTAGCAACCACCTTTATATTCAAGGATAT
63007326 TTGGTCTAAT
Statistics
Matches: 140, Mismatches: 24, Indels: 18
0.77 0.13 0.10
Matches are distributed among these distances:
43 35 0.25
44 39 0.28
45 66 0.47
ACGTcount: A:0.31, C:0.24, G:0.17, T:0.28
Consensus pattern (45 bp):
TGGAATCAGCACTTAGCAACCACCTTTATATTCAAGGATATCCGA
Found at i:63007317 original size:88 final size:89
Alignment explanation
Indices: 63007107--63007330 Score: 333
Period size: 88 Copynumber: 2.5 Consensus size: 89
63007097 TAATTACACT
* * * ** * *
63007107 GTGGAATCAACACTTAGCAACCACCTTTATATTCAAGGTTATCCGATGGAACCAGCACTTAGCAA
1 GTGGAATCAGCACTTAGCAACCACCTTTATATTCGAGGATATTTGGTGGAACCAGCACTTAACAA
63007172 CCACCTTACTTACATGGATATCCA
66 CCACCTTACTTACATGGATATCCA
**
63007196 GTGGAATCAGCACTTAGCAACCACCTTTATATTCGAGGATATTTGGTGGAATTAGCACTTAACAA
1 GTGGAATCAGCACTTAGCAACCACCTTTATATTCGAGGATATTTGGTGGAACCAGCACTTAACAA
*
63007261 CCACC-TACTTACATGGATATCCG
66 CCACCTTACTTACATGGATATCCA
* *
63007284 GTGGAATTAGCGCTTAGCAACCACCTTTATATTCGAGGATATTTGGT
1 GTGGAATCAGCACTTAGCAACCACCTTTATATTCGAGGATATTTGGT
63007331 CTAATCCGAG
Statistics
Matches: 123, Mismatches: 12, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
88 62 0.50
89 61 0.50
ACGTcount: A:0.30, C:0.23, G:0.18, T:0.29
Consensus pattern (89 bp):
GTGGAATCAGCACTTAGCAACCACCTTTATATTCGAGGATATTTGGTGGAACCAGCACTTAACAA
CCACCTTACTTACATGGATATCCA
Found at i:63012032 original size:8 final size:8
Alignment explanation
Indices: 63012019--63012052 Score: 68
Period size: 8 Copynumber: 4.2 Consensus size: 8
63012009 AAAAAATCGG
63012019 AATAATAA
1 AATAATAA
63012027 AATAATAA
1 AATAATAA
63012035 AATAATAA
1 AATAATAA
63012043 AATAATAA
1 AATAATAA
63012051 AA
1 AA
63012053 GATGATAAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 26 1.00
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (8 bp):
AATAATAA
Found at i:63013859 original size:18 final size:19
Alignment explanation
Indices: 63013822--63013876 Score: 67
Period size: 20 Copynumber: 2.8 Consensus size: 19
63013812 ATTACAAAAT
*
63013822 AATTCAAAATAATTTTTAAA
1 AATTCAAAAT-ATTTATAAA
63013842 AA-TCAAAATATTTATAAA
1 AATTCAAAATATTTATAAA
*
63013860 AATTCCAAAATTTTTAT
1 AATT-CAAAATATTTAT
63013877 CTTTAAAAAA
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
18 10 0.32
19 8 0.26
20 13 0.42
ACGTcount: A:0.53, C:0.07, G:0.00, T:0.40
Consensus pattern (19 bp):
AATTCAAAATATTTATAAA
Found at i:63014725 original size:15 final size:16
Alignment explanation
Indices: 63014705--63014735 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
63014695 TATTTTTTTA
63014705 TGAATCAT-ATCACAT
1 TGAATCATAATCACAT
63014720 TGAATCATAATCACAT
1 TGAATCATAATCACAT
63014736 CATGTCTTAC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 8 0.53
16 7 0.47
ACGTcount: A:0.42, C:0.19, G:0.06, T:0.32
Consensus pattern (16 bp):
TGAATCATAATCACAT
Found at i:63017529 original size:19 final size:20
Alignment explanation
Indices: 63017494--63017591 Score: 137
Period size: 21 Copynumber: 4.8 Consensus size: 20
63017484 AATCATATCT
*
63017494 TCTAAGATTGTATATATCATA
1 TCTAAGATTG-CTATATCATA
63017515 TCTAAGATTGCATATATCATA
1 TCTAAGATTGC-TATATCATA
*
63017536 TCTAAGATTTCTTATATCATA
1 TCTAAGATTGC-TATATCATA
63017557 TCTAAGATTGC-ATATCATA
1 TCTAAGATTGCTATATCATA
63017576 TCTAAGATTG-TATATC
1 TCTAAGATTGCTATATC
63017592 CTCGAAAATT
Statistics
Matches: 71, Mismatches: 4, Indels: 6
0.88 0.05 0.07
Matches are distributed among these distances:
19 23 0.32
21 48 0.68
ACGTcount: A:0.36, C:0.13, G:0.09, T:0.42
Consensus pattern (20 bp):
TCTAAGATTGCTATATCATA
Found at i:63017544 original size:42 final size:40
Alignment explanation
Indices: 63017487--63017590 Score: 151
Period size: 42 Copynumber: 2.6 Consensus size: 40
63017477 ATTACAAAAT
63017487 CATATC-T-TCTAAGATTGTATATATCATATCTAAGATTG
1 CATATCATATCTAAGATTGTATATATCATATCTAAGATTG
*
63017525 CATATATCATATCTAAGATT-TCTTATATCATATCTAAGATTG
1 C--ATATCATATCTAAGATTGT-ATATATCATATCTAAGATTG
63017567 CATATCATATCTAAGATTGTATAT
1 CATATCATATCTAAGATTGTATAT
63017591 CCTCGAAAAT
Statistics
Matches: 58, Mismatches: 2, Indels: 10
0.83 0.03 0.14
Matches are distributed among these distances:
38 1 0.02
40 25 0.43
41 3 0.05
42 29 0.50
ACGTcount: A:0.36, C:0.13, G:0.09, T:0.42
Consensus pattern (40 bp):
CATATCATATCTAAGATTGTATATATCATATCTAAGATTG
Found at i:63017873 original size:44 final size:45
Alignment explanation
Indices: 63017805--63017921 Score: 129
Period size: 44 Copynumber: 2.7 Consensus size: 45
63017795 TCTCGATCCA
* *
63017805 CTCCACCGCAACATC-GGAGAGATAAGA-TTGGTTCA-TTCAGTCTG
1 CTCCACTGCAACTTCAGGAGAGATAAGACTT-GTTCACTT-AGTCTG
*
63017849 C-CTCACTGCAACTTCAGGAG-GATAAGACTTGTTTACTTAGTCTG
1 CTC-CACTGCAACTTCAGGAGAGATAAGACTTGTTCACTTAGTCTG
*
63017893 CTCCACTGCAACTTCAGG-GAAATAAGACT
1 CTCCACTGCAACTTCAGGAGAGATAAGACT
63017922 AGATGCGATT
Statistics
Matches: 63, Mismatches: 4, Indels: 12
0.80 0.05 0.15
Matches are distributed among these distances:
43 2 0.03
44 52 0.83
45 9 0.14
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (45 bp):
CTCCACTGCAACTTCAGGAGAGATAAGACTTGTTCACTTAGTCTG
Found at i:63020484 original size:44 final size:44
Alignment explanation
Indices: 63018193--63020487 Score: 183
Period size: 44 Copynumber: 52.2 Consensus size: 44
63018183 TATCTTGGAA
* **
63018193 AGATAAGATTTGCCGACTTTGATCTGCTCCACTACTGCTTAGGG
1 AGATAAGATTTGCCGTCTTCAATCTGCTCCACTACTGCTTAGGG
* * * ** * * * * * *
63018237 AAATAAGATCTACAATCTTCAACCTTCTCCGCTGCTGCTCAGAG
1 AGATAAGATTTGCCGTCTTCAATCTGCTCCACTACTGCTTAGGG
* * * *
63018281 AGACAAGACTTTG-TGGCTT-AATCTGCTTCCCACTA-T-CTT-GGAA
1 AGATAAGA-TTTGCCGTCTTCAATCTGC-T-CCACTACTGCTTAGG-G
* * ** *
63018324 AGATAAGATTTTCCATCTTTGATCTGCTCCACTACTGTTTAGGG
1 AGATAAGATTTGCCGTCTTCAATCTGCTCCACTACTGCTTAGGG
* * ** * * * * * * *
63018368 AGATAAGATCTACAATTTTCAACCTACTCCGCTGCTGCTCAAGG
1 AGATAAGATTTGCCGTCTTCAATCTGCTCCACTACTGCTTAGGG
* * ** * * * *
63018412 AGACAA-AGCTTGGTGGCTTAAATCCGCTTCCCACTA-T-CTT-GGAA
1 AGATAAGA-TTTGCCGTCTTCAATCTGC-T-CCACTACTGCTTAGG-G
* **
63018456 AGATAAGATTTGACGTCTTTGATCTGCTCCACTACTGCTTAGGG
1 AGATAAGATTTGCCGTCTTCAATCTGCTCCACTACTGCTTAGGG
* * ** * * * * * *
63018500 AGATAAGATCTACAATCCTCAATCTTCTCCGCTGCTGCTCAGAG
1 AGATAAGATTTGCCGTCTTCAATCTGCTCCACTACTGCTTAGGG
* * ** * * **
63018544 AGACAATG-CTTGGTGGCTTAAATCTGCTTCCTACTA-T-CTT-GAAA
1 AGATAA-GATTTGCCGTCTTCAATCTGC-TCC-ACTACTGCTTAG-GG
* * **
63018588 AGATAAGATTTGTCGACTTTGATCTGCTCCACTACTGCTTAGGG
1 AGATAAGATTTGCCGTCTTCAATCTGCTCCACTACTGCTTAGGG
* * * ** * * * * * *
63018632 AAATAAGATCTACAATCTTCAACCTTCTCCGCTGCTGCTCAGAG
1 AGATAAGATTTGCCGTCTTCAATCTGCTCCACTACTGCTTAGGG
* * * *
63018676 AGACAAGACTTTG-TGGCTT-AATCTGCTTCCCACTA-T-CTT-GGAA
1 AGATAAGA-TTTGCCGTCTTCAATCTGC-T-CCACTACTGCTTAGG-G
* * * ** *
63018719 AAATAAGATTTTCCATCTTTGATCTGCTCCACTATTGCTTAGGG
1 AGATAAGATTTGCCGTCTTCAATCTGCTCCACTACTGCTTAGGG
* **** * * * * *
63018763 AGATAAGATCTATAATTTTCAACCTACTCCGCTGCTGCTTAGGG
1 AGATAAGATTTGCCGTCTTCAATCTGCTCCACTACTGCTTAGGG
* * ** * * * *
63018807 AGACAA-AGCTTGGTGGCTTAAATCTACTTCCCACTA-T-CTT-GGAA
1 AGATAAGA-TTTGCCGTCTTCAATCTGC-T-CCACTACTGCTTAGG-G
* ** *
63018851 AGATAAGATTTGACGTCTTTGATCTGCTCTACTACTGCTTAGGG
1 AGATAAGATTTGCCGTCTTCAATCTGCTCCACTACTGCTTAGGG
* * ** * * * * *
63018895 AGATAAGATCTACAATCCTT-AATTTTCTCCGCTGCTGCTTAGAG
1 AGATAAGATTTGCCGT-CTTCAATCTGCTCCACTACTGCTTAGGG
* * * * * *
63018939 AGACAAGGCTTTG-TGGCTTAAATCTGCTTCCCACTA-T-CTT-GGAA
1 AGATAA-GATTTGCCGTCTTCAATCTGC-T-CCACTACTGCTTAGG-G
* * * **
63018983 AGATAATATTTACCATCTTTGATCTGCTCCACTACTGCTTAGGG
1 AGATAAGATTTGCCGTCTTCAATCTGCTCCACTACTGCTTAGGG
* * * ** * * ** * * **
63019027 AAATAAGATCTACAATCTTCAACCTTCTCCGTTGCTGCTCAAAG
1 AGATAAGATTTGCCGTCTTCAATCTGCTCCACTACTGCTTAGGG
* * * * * *
63019071 AGACAAGGCTTTG-TGGCTTAAATCTGCTTCCCACTA-T-CTT-GGAA
1 AGATAA-GATTTGCCGTCTTCAATCTGC-T-CCACTACTGCTTAGG-G
* ** * * *
63019115 AGATAAGATTTGCCATCTTTGATCTACTACACTACTGCTTAGAG
1 AGATAAGATTTGCCGTCTTCAATCTGCTCCACTACTGCTTAGGG
* * ** * * * *
63019159 AGATAAGATCTACAATCTTCAACCTACTCCACTGCTGCTCAGGG
1 AGATAAGATTTGCCGTCTTCAATCTGCTCCACTACTGCTTAGGG
* * * * * *
63019203 AGACAAGGCTTTG-TGGCTTAAATCTGCTTCCCACTA-T-CTT-GGAA
1 AGATAA-GATTTGCCGTCTTCAATCTGC-T-CCACTACTGCTTAGG-G
* *
63019247 ACATAAGATTTGCCGTCTTCGATCTGCTCCACTACTGCTTAGGG
1 AGATAAGATTTGCCGTCTTCAATCTGCTCCACTACTGCTTAGGG
* * ** * * ** * * *
63019291 AGATAAGATCTACAATCTTCAACCTTCTCCGTTGCTGCTCAGAG
1 AGATAAGATTTGCCGTCTTCAATCTGCTCCACTACTGCTTAGGG
* * * * * * * *
63019335 AAACAATGCTTTG-TGGCTTAAATCTACTTCCCACTA-T-CTT-GGAA
1 AGATAA-GATTTGCCGTCTTCAATCTGC-T-CCACTACTGCTTAGG-G
* * ** *
63019379 AGATAAGATTTTCCATCTTTGATCTACTCCACTACTGCTTAGGG
1 AGATAAGATTTGCCGTCTTCAATCTGCTCCACTACTGCTTAGGG
* * **** * * * ** * *
63019423 AGATGAGATCTATAATCTTTAACCTACTCTGCTGCTGCTCAGGG
1 AGATAAGATTTGCCGTCTTCAATCTGCTCCACTACTGCTTAGGG
** ** ** * * *
63019467 AGGCAAGGCTTGGTGGCTTAAATCTGCTTCCCACTA-T-CTT-GGAA
1 AGATAAGATTTGCCGTCTTCAATCTGC-T-CCACTACTGCTTAGG-G
* * *
63019511 AGATAAGATTTACCGTCTTCGATCTGCCCCACTACTGCTTAGGG
1 AGATAAGATTTGCCGTCTTCAATCTGCTCCACTACTGCTTAGGG
* * ** * * * ** * *
63019555 AGATAAGATCTACAATCTTCAATATTCTCCGCTGTTGCTCAGAG
1 AGATAAGATTTGCCGTCTTCAATCTGCTCCACTACTGCTTAGGG
* * * * ** * *
63019599 AGACAAGGCTTTG-TGGCTGAAATCTACTTCCCACTA-T-CTT-GGAA
1 AGATAA-GATTTGCCGTCTTCAATCTGC-T-CCACTACTGCTTAGG-G
* ** *
63019643 AGATAAGATTTGCCATCTTGGATCTACTCCACTACTGCTTAGGG
1 AGATAAGATTTGCCGTCTTCAATCTGCTCCACTACTGCTTAGGG
* * ** * * * * *
63019687 AGATAAGATCTACAATCTTCAACCTACTCCGCTGCTGCTCAGGG
1 AGATAAGATTTGCCGTCTTCAATCTGCTCCACTACTGCTTAGGG
* ** ** * * * *
63019731 AGACAAGGCTTGGTGGCTTAAATCTACTTCCCACTA-T-CTT-GGA
1 AGATAAGATTTGCCGTCTTCAATCTGC-T-CCACTACTGCTTAGGG
* **
63019774 AGGATAAGATTTGTCGTCTTTGATCTGCTCCACTACTGCTTAGGG
1 A-GATAAGATTTGCCGTCTTCAATCTGCTCCACTACTGCTTAGGG
* * ** * * * * *
63019819 AGATAAGATCTACAATCTTCAACCTTCTCCGCTGCTGCTTAGAG
1 AGATAAGATTTGCCGTCTTCAATCTGCTCCACTACTGCTTAGGG
* * * * * *
63019863 AGACAAGGCTTTG-TGGCTTAAATCTGCTTCCCACTA-T-CTT-GGAA
1 AGATAA-GATTTGCCGTCTTCAATCTGC-T-CCACTACTGCTTAGG-G
* ** *
63019907 AGATAAGATTTGCCATCTTTGATATGCTCCACTACTGCTTAGGG
1 AGATAAGATTTGCCGTCTTCAATCTGCTCCACTACTGCTTAGGG
* ** * * * * * * **
63019951 AGATAAG-TCTTACAATCTTCAACCTTCTTCGCTGCTGCTCAAAG
1 AGATAAGAT-TTGCCGTCTTCAATCTGCTCCACTACTGCTTAGGG
* * ** * * *
63019995 AGACAAGGCTTT-TTGGCTTAAATCTGCTTCCCACTA-T-CTT-GGAA
1 AGATAA-GATTTGCCGTCTTCAATCTGC-T-CCACTACTGCTTAGG-G
** * * **
63020039 AGATAAGATTTGCCCG-CTTTGATCTACTCCACTACTGTTTCCGG
1 AGATAAGATTTG-CCGTCTTCAATCTGCTCCACTACTGCTTAGGG
* * * ** * * * *
63020083 AGATAAGGTCTACAATCTTCAACCTACTCCGCTACTGCTCAGGG
1 AGATAAGATTTGCCGTCTTCAATCTGCTCCACTACTGCTTAGGG
** ** * * *
63020127 AGATAAGGCTTGGTGGCTTAAATCTGCTTCCCACTA-T-CTT-GGAA
1 AGATAAGATTTGCCGTCTTCAATCTGC-T-CCACTACTGCTTAGG-G
* *
63020171 AGATAAGATTTGTCGTCTTCGATCTGCTCCACTACTGCTTAGGG
1 AGATAAGATTTGCCGTCTTCAATCTGCTCCACTACTGCTTAGGG
* * ** * ** * ** * * * *
63020215 AGATAAGATCTACAATTTTTTACCTTTTCCGCTGCTGCTCAGAG
1 AGATAAGATTTGCCGTCTTCAATCTGCTCCACTACTGCTTAGGG
* * * * * *
63020259 AGACAAGGCTTTG-TGGCTTAAATCTGCTTCC-C-ACTGTCTT-GGAA
1 AGATAA-GATTTGCCGTCTTCAATCTGC-TCCACTACTG-CTTAGG-G
* ** *
63020303 AGATAATATTTGCCGTCTTTGATTTGCTCCACTACTGCTTAGGG
1 AGATAAGATTTGCCGTCTTCAATCTGCTCCACTACTGCTTAGGG
* * ** * * *** *
63020347 AGATAAGATCTACAATCTTCAACCTACTATGCTGCTGCTTAGGG
1 AGATAAGATTTGCCGTCTTCAATCTGCTCCACTACTGCTTAGGG
* ** ** * * * *
63020391 AGACAAGGCTTGGTGGCTTAAATTTGCTTCCCACTA-T-CTT-GGAA
1 AGATAAGATTTGCCGTCTTCAATCTGC-T-CCACTACTGCTTAGG-G
*
63020435 AGATAAGATTTGCCGTCTTCGATCTGCTCCACTACTGCTTAGGG
1 AGATAAGATTTGCCGTCTTCAATCTGCTCCACTACTGCTTAGGG
63020479 AGATAAGAT
1 AGATAAGAT
63020488 CTACAATCTT
Statistics
Matches: 1476, Mismatches: 639, Indels: 272
0.62 0.27 0.11
Matches are distributed among these distances:
42 100 0.07
43 135 0.09
44 1078 0.73
45 112 0.08
46 51 0.03
ACGTcount: A:0.26, C:0.24, G:0.19, T:0.32
Consensus pattern (44 bp):
AGATAAGATTTGCCGTCTTCAATCTGCTCCACTACTGCTTAGGG
Found at i:63020537 original size:132 final size:132
Alignment explanation
Indices: 63018118--63020533 Score: 3519
Period size: 132 Copynumber: 18.3 Consensus size: 132
63018108 TCCTCCACTG
* * * * *
63018118 CAAT-TTCAACCTACTCCACTGCTGCTCAGGGAGATAAGGCTTGGTGGCTTAAATCTGCTTCCCA
1 CAATCTTCAACCTTCTCCGCTGCTGCTCAAGGAGACAAGGCTTTGTGGCTTAAATCTGCTTCCCA
* *
63018182 CTATCTTGGAAAGATAAGATTTGCCGACTTTGATCTGCTCCACTACTGCTTAGGGAAATAAGATC
66 CTATCTTGGAAAGATAAGATTTGCCGTCTTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATC
63018247 TA
131 TA
*
63018249 CAATCTTCAACCTTCTCCGCTGCTGCTC-AGAGAGACAAGACTTTGTGGCTT-AATCTGCTTCCC
1 CAATCTTCAACCTTCTCCGCTGCTGCTCAAG-GAGACAAGGCTTTGTGGCTTAAATCTGCTTCCC
* * *
63018312 ACTATCTTGGAAAGATAAGATTTTCCATCTTTGATCTGCTCCACTACTGTTTAGGGAGATAAGAT
65 ACTATCTTGGAAAGATAAGATTTGCCGTCTTTGATCTGCTCCACTACTGCTTAGGGAGATAAGAT
63018377 CTA
130 CTA
* * * * *
63018380 CAATTTTCAACCTACTCCGCTGCTGCTCAAGGAGACAAAGCTTGGTGGCTTAAATCCGCTTCCCA
1 CAATCTTCAACCTTCTCCGCTGCTGCTCAAGGAGACAAGGCTTTGTGGCTTAAATCTGCTTCCCA
*
63018445 CTATCTTGGAAAGATAAGATTTGACGTCTTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATC
66 CTATCTTGGAAAGATAAGATTTGCCGTCTTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATC
63018510 TA
131 TA
* * * * *
63018512 CAATCCTCAATCTTCTCCGCTGCTGCTC-AGAGAGACAATGCTTGGTGGCTTAAATCTGCTTCCT
1 CAATCTTCAACCTTCTCCGCTGCTGCTCAAG-GAGACAAGGCTTTGTGGCTTAAATCTGCTTCCC
* * * *
63018576 ACTATCTTGAAAAGATAAGATTTGTCGACTTTGATCTGCTCCACTACTGCTTAGGGAAATAAGAT
65 ACTATCTTGGAAAGATAAGATTTGCCGTCTTTGATCTGCTCCACTACTGCTTAGGGAGATAAGAT
63018641 CTA
130 CTA
*
63018644 CAATCTTCAACCTTCTCCGCTGCTGCTC-AGAGAGACAAGACTTTGTGGCTT-AATCTGCTTCCC
1 CAATCTTCAACCTTCTCCGCTGCTGCTCAAG-GAGACAAGGCTTTGTGGCTTAAATCTGCTTCCC
* * * *
63018707 ACTATCTTGGAAAAATAAGATTTTCCATCTTTGATCTGCTCCACTATTGCTTAGGGAGATAAGAT
65 ACTATCTTGGAAAGATAAGATTTGCCGTCTTTGATCTGCTCCACTACTGCTTAGGGAGATAAGAT
63018772 CTA
130 CTA
* * * * * * * *
63018775 TAATTTTCAACCTACTCCGCTGCTGCTTAGGGAGACAAAGCTTGGTGGCTTAAATCTACTTCCCA
1 CAATCTTCAACCTTCTCCGCTGCTGCTCAAGGAGACAAGGCTTTGTGGCTTAAATCTGCTTCCCA
* *
63018840 CTATCTTGGAAAGATAAGATTTGACGTCTTTGATCTGCTCTACTACTGCTTAGGGAGATAAGATC
66 CTATCTTGGAAAGATAAGATTTGCCGTCTTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATC
63018905 TA
131 TA
** *
63018907 CAATCCTT-AATTTTCTCCGCTGCTGCT-TAGAGAGACAAGGCTTTGTGGCTTAAATCTGCTTCC
1 CAAT-CTTCAACCTTCTCCGCTGCTGCTCAAG-GAGACAAGGCTTTGTGGCTTAAATCTGCTTCC
* * * *
63018970 CACTATCTTGGAAAGATAATATTTACCATCTTTGATCTGCTCCACTACTGCTTAGGGAAATAAGA
64 CACTATCTTGGAAAGATAAGATTTGCCGTCTTTGATCTGCTCCACTACTGCTTAGGGAGATAAGA
63019035 TCTA
129 TCTA
* *
63019039 CAATCTTCAACCTTCTCCGTTGCTGCTCAAAGAGACAAGGCTTTGTGGCTTAAATCTGCTTCCCA
1 CAATCTTCAACCTTCTCCGCTGCTGCTCAAGGAGACAAGGCTTTGTGGCTTAAATCTGCTTCCCA
* * * *
63019104 CTATCTTGGAAAGATAAGATTTGCCATCTTTGATCTACTACACTACTGCTTAGAGAGATAAGATC
66 CTATCTTGGAAAGATAAGATTTGCCGTCTTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATC
63019169 TA
131 TA
* * *
63019171 CAATCTTCAACCTACTCCACTGCTGCTCAGGGAGACAAGGCTTTGTGGCTTAAATCTGCTTCCCA
1 CAATCTTCAACCTTCTCCGCTGCTGCTCAAGGAGACAAGGCTTTGTGGCTTAAATCTGCTTCCCA
* *
63019236 CTATCTTGGAAACATAAGATTTGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATC
66 CTATCTTGGAAAGATAAGATTTGCCGTCTTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATC
63019301 TA
131 TA
* * * *
63019303 CAATCTTCAACCTTCTCCGTTGCTGCTC-AGAGAAACAATGCTTTGTGGCTTAAATCTACTTCCC
1 CAATCTTCAACCTTCTCCGCTGCTGCTCAAG-GAGACAAGGCTTTGTGGCTTAAATCTGCTTCCC
* * * *
63019367 ACTATCTTGGAAAGATAAGATTTTCCATCTTTGATCTACTCCACTACTGCTTAGGGAGATGAGAT
65 ACTATCTTGGAAAGATAAGATTTGCCGTCTTTGATCTGCTCCACTACTGCTTAGGGAGATAAGAT
63019432 CTA
130 CTA
* * * * * * *
63019435 TAATCTTTAACCTACTCTGCTGCTGCTCAGGGAGGCAAGGCTTGGTGGCTTAAATCTGCTTCCCA
1 CAATCTTCAACCTTCTCCGCTGCTGCTCAAGGAGACAAGGCTTTGTGGCTTAAATCTGCTTCCCA
* * *
63019500 CTATCTTGGAAAGATAAGATTTACCGTCTTCGATCTGCCCCACTACTGCTTAGGGAGATAAGATC
66 CTATCTTGGAAAGATAAGATTTGCCGTCTTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATC
63019565 TA
131 TA
** * * *
63019567 CAATCTTCAATATTCTCCGCTGTTGCTC-AGAGAGACAAGGCTTTGTGGCTGAAATCTACTTCCC
1 CAATCTTCAACCTTCTCCGCTGCTGCTCAAG-GAGACAAGGCTTTGTGGCTTAAATCTGCTTCCC
* * *
63019631 ACTATCTTGGAAAGATAAGATTTGCCATCTTGGATCTACTCCACTACTGCTTAGGGAGATAAGAT
65 ACTATCTTGGAAAGATAAGATTTGCCGTCTTTGATCTGCTCCACTACTGCTTAGGGAGATAAGAT
63019696 CTA
130 CTA
* * * *
63019699 CAATCTTCAACCTACTCCGCTGCTGCTCAGGGAGACAAGGCTTGGTGGCTTAAATCTACTTCCCA
1 CAATCTTCAACCTTCTCCGCTGCTGCTCAAGGAGACAAGGCTTTGTGGCTTAAATCTGCTTCCCA
* *
63019764 CTATCTTGGAAGGATAAGATTTGTCGTCTTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATC
66 CTATCTTGGAAAGATAAGATTTGCCGTCTTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATC
63019829 TA
131 TA
*
63019831 CAATCTTCAACCTTCTCCGCTGCTGCT-TAGAGAGACAAGGCTTTGTGGCTTAAATCTGCTTCCC
1 CAATCTTCAACCTTCTCCGCTGCTGCTCAAG-GAGACAAGGCTTTGTGGCTTAAATCTGCTTCCC
* *
63019895 ACTATCTTGGAAAGATAAGATTTGCCATCTTTGATATGCTCCACTACTGCTTAGGGAGATAAG-T
65 ACTATCTTGGAAAGATAAGATTTGCCGTCTTTGATCTGCTCCACTACTGCTTAGGGAGATAAGAT
63019959 CTTA
130 C-TA
* * *
63019963 CAATCTTCAACCTTCTTCGCTGCTGCTCAAAGAGACAAGGCTTTTTGGCTTAAATCTGCTTCCCA
1 CAATCTTCAACCTTCTCCGCTGCTGCTCAAGGAGACAAGGCTTTGTGGCTTAAATCTGCTTCCCA
* * ** *
63020028 CTATCTTGGAAAGATAAGATTTGCCCG-CTTTGATCTACTCCACTACTGTTTCCGGAGATAAGGT
66 CTATCTTGGAAAGATAAGATTTG-CCGTCTTTGATCTGCTCCACTACTGCTTAGGGAGATAAGAT
63020092 CTA
130 CTA
* * * * *
63020095 CAATCTTCAACCTACTCCGCTACTGCTCAGGGAGATAAGGCTTGGTGGCTTAAATCTGCTTCCCA
1 CAATCTTCAACCTTCTCCGCTGCTGCTCAAGGAGACAAGGCTTTGTGGCTTAAATCTGCTTCCCA
* *
63020160 CTATCTTGGAAAGATAAGATTTGTCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATC
66 CTATCTTGGAAAGATAAGATTTGCCGTCTTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATC
63020225 TA
131 TA
* ** *
63020227 CAATTTTTTACCTTTTCCGCTGCTGCTC-AGAGAGACAAGGCTTTGTGGCTTAAATCTGCTTCCC
1 CAATCTTCAACCTTCTCCGCTGCTGCTCAAG-GAGACAAGGCTTTGTGGCTTAAATCTGCTTCCC
* * *
63020291 ACTGTCTTGGAAAGATAATATTTGCCGTCTTTGATTTGCTCCACTACTGCTTAGGGAGATAAGAT
65 ACTATCTTGGAAAGATAAGATTTGCCGTCTTTGATCTGCTCCACTACTGCTTAGGGAGATAAGAT
63020356 CTA
130 CTA
* ** * * * *
63020359 CAATCTTCAACCTACTATGCTGCTGCTTAGGGAGACAAGGCTTGGTGGCTTAAATTTGCTTCCCA
1 CAATCTTCAACCTTCTCCGCTGCTGCTCAAGGAGACAAGGCTTTGTGGCTTAAATCTGCTTCCCA
*
63020424 CTATCTTGGAAAGATAAGATTTGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATC
66 CTATCTTGGAAAGATAAGATTTGCCGTCTTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATC
63020489 TA
131 TA
63020491 CAATCTTCAACCTTCTCCGCTGCTGCTCAAGGAGACAAGGCTT
1 CAATCTTCAACCTTCTCCGCTGCTGCTCAAGGAGACAAGGCTT
63020534 GGTGTTTCAC
Statistics
Matches: 2036, Mismatches: 226, Indels: 45
0.88 0.10 0.02
Matches are distributed among these distances:
131 249 0.12
132 1776 0.87
133 11 0.01
ACGTcount: A:0.26, C:0.24, G:0.19, T:0.32
Consensus pattern (132 bp):
CAATCTTCAACCTTCTCCGCTGCTGCTCAAGGAGACAAGGCTTTGTGGCTTAAATCTGCTTCCCA
CTATCTTGGAAAGATAAGATTTGCCGTCTTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATC
TA
Found at i:63021708 original size:22 final size:22
Alignment explanation
Indices: 63021682--63021733 Score: 72
Period size: 22 Copynumber: 2.4 Consensus size: 22
63021672 CTCCTTTTGC
63021682 TTTTCTTTTCCTT-TTTCTTTCT
1 TTTTCTTTTCCTTCTTTCTTT-T
*
63021704 TTTTCTTTTCTTTCTTTCTTTT
1 TTTTCTTTTCCTTCTTTCTTTT
63021726 TTTT-TTTT
1 TTTTCTTTT
63021734 GTTGAAAAAT
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
21 4 0.14
22 17 0.61
23 7 0.25
ACGTcount: A:0.00, C:0.17, G:0.00, T:0.83
Consensus pattern (22 bp):
TTTTCTTTTCCTTCTTTCTTTT
Found at i:63021714 original size:15 final size:16
Alignment explanation
Indices: 63021673--63021720 Score: 62
Period size: 15 Copynumber: 3.0 Consensus size: 16
63021663 CCTTGGCCTC
*
63021673 TCCTTTTGCTTTTCTTT
1 TCCTTTTTC-TTTCTTT
63021690 TCCTTTTTCTTTCTTT
1 TCCTTTTTCTTTCTTT
*
63021706 TTC-TTTTCTTTCTTT
1 TCCTTTTTCTTTCTTT
63021721 CTTTTTTTTT
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
15 12 0.41
16 9 0.31
17 8 0.28
ACGTcount: A:0.00, C:0.23, G:0.02, T:0.75
Consensus pattern (16 bp):
TCCTTTTTCTTTCTTT
Found at i:63021727 original size:15 final size:15
Alignment explanation
Indices: 63021683--63021727 Score: 56
Period size: 15 Copynumber: 2.9 Consensus size: 15
63021673 TCCTTTTGCT
*
63021683 TTTCTTTTCCTTTTTC
1 TTTC-TTTCTTTTTTC
63021699 TTTCTTT-TTCTTTTC
1 TTTCTTTCTT-TTTTC
63021714 TTTCTTTCTTTTTT
1 TTTCTTTCTTTTTT
63021728 TTTTTTGTTG
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
14 1 0.04
15 19 0.73
16 6 0.23
ACGTcount: A:0.00, C:0.20, G:0.00, T:0.80
Consensus pattern (15 bp):
TTTCTTTCTTTTTTC
Found at i:63021731 original size:19 final size:19
Alignment explanation
Indices: 63021695--63021730 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
63021685 TCTTTTCCTT
63021695 TTTCTTTCTTTTTCTTTTC
1 TTTCTTTCTTTTTCTTTTC
63021714 TTTCTTTCTTTTT-TTTT
1 TTTCTTTCTTTTTCTTTT
63021731 TTTGTTGAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
18 4 0.24
19 13 0.76
ACGTcount: A:0.00, C:0.17, G:0.00, T:0.83
Consensus pattern (19 bp):
TTTCTTTCTTTTTCTTTTC
Found at i:63027047 original size:3 final size:3
Alignment explanation
Indices: 63027039--63027081 Score: 52
Period size: 3 Copynumber: 14.3 Consensus size: 3
63027029 ATATGTAGGT
* *
63027039 ATA ATA ATA ATA ATA TATA AT- ACA ATA ATA AAA ATA ATA ATA A
1 ATA ATA ATA ATA ATA -ATA ATA ATA ATA ATA ATA ATA ATA ATA A
63027082 AAAATTAATA
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
2 1 0.03
3 30 0.88
4 3 0.09
ACGTcount: A:0.67, C:0.02, G:0.00, T:0.30
Consensus pattern (3 bp):
ATA
Found at i:63027104 original size:33 final size:33
Alignment explanation
Indices: 63027039--63027105 Score: 84
Period size: 33 Copynumber: 2.0 Consensus size: 33
63027029 ATATGTAGGT
* *
63027039 ATAATAATAATAATATATAATACAATAATAAAA
1 ATAATAATAATAAAATATAATAAAATAATAAAA
63027072 ATAATAATAA-AAAAT-TAATAAAATAGACTAAAA
1 ATAATAATAATAAAATATAATAAAATA-A-TAAAA
63027105 A
1 A
63027106 CCTAAAATGA
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
31 9 0.30
32 5 0.17
33 16 0.53
ACGTcount: A:0.69, C:0.03, G:0.01, T:0.27
Consensus pattern (33 bp):
ATAATAATAATAAAATATAATAAAATAATAAAA
Found at i:63027340 original size:19 final size:21
Alignment explanation
Indices: 63027302--63027340 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 21
63027292 CCTTTTTTAA
*
63027302 AATCGTAAATAAGTAAAAAAT
1 AATCGTAAATAAGAAAAAAAT
63027323 AATCG-AAA-AAGAAAAAAA
1 AATCGTAAATAAGAAAAAAA
63027341 GAAAACAGTA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 9 0.53
20 3 0.18
21 5 0.29
ACGTcount: A:0.69, C:0.05, G:0.10, T:0.15
Consensus pattern (21 bp):
AATCGTAAATAAGAAAAAAAT
Found at i:63027568 original size:21 final size:19
Alignment explanation
Indices: 63027542--63027596 Score: 83
Period size: 19 Copynumber: 2.8 Consensus size: 19
63027532 AATCATATCT
63027542 TCTAAGATTGTATATATCATA
1 TCTAAGATTGTATATA--ATA
*
63027563 TCTAAGATTGCATATAATA
1 TCTAAGATTGTATATAATA
63027582 TCTAAGATTGTATAT
1 TCTAAGATTGTATAT
63027597 CCTCGAAAAT
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
19 17 0.53
21 15 0.47
ACGTcount: A:0.38, C:0.09, G:0.11, T:0.42
Consensus pattern (19 bp):
TCTAAGATTGTATATAATA
Found at i:63027982 original size:42 final size:42
Alignment explanation
Indices: 63027883--63028090 Score: 265
Period size: 42 Copynumber: 4.9 Consensus size: 42
63027873 CTTTTCCAAC
* * ** * *
63027883 AAACGCCGCTAAAGTCCCTGCTCTTTAGC-AGCGCTTTTGTCG
1 AAACGCCGCTAAAGACCATTATCTTTAGCGA-CGCTTTTATAG
63027925 CAAACGCCGCTAAAGACCATTATCTTTAGCGACGCTTTTATAG
1 -AAACGCCGCTAAAGACCATTATCTTTAGCGACGCTTTTATAG
63027968 AAACGCCGCTAAAGACCATTATCTTTAGCGACGCTTTTATAG
1 AAACGCCGCTAAAGACCATTATCTTTAGCGACGCTTTTATAG
* ** * *
63028010 AAACGCCGCTAAAGACCATTACCTTTAGCGACATTTTTACCAC
1 AAACGCCGCTAAAGACCATTATCTTTAGCGACGCTTTTA-TAG
* *
63028053 AAACGCCGCTAAAGACCGTTATCTTTAGCGGCGCTTTT
1 AAACGCCGCTAAAGACCATTATCTTTAGCGACGCTTTT
63028091 TTTAAAAACG
Statistics
Matches: 147, Mismatches: 16, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
42 78 0.53
43 68 0.46
44 1 0.01
ACGTcount: A:0.27, C:0.27, G:0.17, T:0.28
Consensus pattern (42 bp):
AAACGCCGCTAAAGACCATTATCTTTAGCGACGCTTTTATAG
Found at i:63028102 original size:43 final size:42
Alignment explanation
Indices: 63027644--63028090 Score: 286
Period size: 43 Copynumber: 10.4 Consensus size: 42
63027634 AAGATAATGG
* ** * **
63027644 TCTTTAGCAGCGCTTTTAGAAATAAACGCTGCTAAAGACCAAGA
1 TCTTTAGCGGCGCTTTT-CCAA-AAACGCCGCTAAAGACCATTA
* * ** **
63027688 CCTTTAGCGGCGC-TTTCGCAACAAACGCCTCTAAAGGTCATGG
1 TCTTTAGCGGCGCTTTTC-CAA-AAACGCCGCTAAAGACCATTA
* * * * *
63027731 TCTTTAGCGGTG-TTTTTCAGACAAACGCCACTAAATACCATGA
1 TCTTTAGCGGCGCTTTTCCA-A-AAACGCCGCTAAAGACCATTA
* * ** * * * *
63027774 CCTTTTAGCGGCGCATTTCCTGCAAATGCCGCTAAATACCCTGA
1 TC-TTTAGCGGCGCTTTTCC-AAAAACGCCGCTAAAGACCATTA
* * * * *
63027818 TCTTTAGCGGCACTTTTCCAACAAACGCTGCTAAATACCCTGA
1 TCTTTAGCGGCGCTTTTCCAA-AAACGCCGCTAAAGACCATTA
* * * * **
63027861 TCTTTAGCAGCACTTTTCCAACAAACGCCGCTAAAGTCCCTGC
1 TCTTTAGCGGCGCTTTTCCAA-AAACGCCGCTAAAGACCATTA
* * **
63027904 TCTTTAGCAGCGCTTTTGTCGCAAACGCCGCTAAAGACCATTA
1 TCTTTAGCGGCGCTTTT-CCAAAAACGCCGCTAAAGACCATTA
* ** *
63027947 TCTTTAGCGACGCTTTTATAGAAACGCCGCTAAAGACCATTA
1 TCTTTAGCGGCGCTTTTCCAAAAACGCCGCTAAAGACCATTA
* ** *
63027989 TCTTTAGCGACGCTTTTATAGAAACGCCGCTAAAGACCATTA
1 TCTTTAGCGGCGCTTTTCCAAAAACGCCGCTAAAGACCATTA
* * ** * *
63028031 CCTTTAGCGACATTTTTACCACAAACGCCGCTAAAGACCGTTA
1 TCTTTAGCGGCGCTTTT-CCAAAAACGCCGCTAAAGACCATTA
63028074 TCTTTAGCGGCGCTTTT
1 TCTTTAGCGGCGCTTTT
63028091 TTTAAAAACG
Statistics
Matches: 329, Mismatches: 65, Indels: 19
0.80 0.16 0.05
Matches are distributed among these distances:
42 79 0.24
43 206 0.63
44 40 0.12
45 4 0.01
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.28
Consensus pattern (42 bp):
TCTTTAGCGGCGCTTTTCCAAAAACGCCGCTAAAGACCATTA
Found at i:63028457 original size:21 final size:21
Alignment explanation
Indices: 63028428--63028487 Score: 84
Period size: 21 Copynumber: 2.9 Consensus size: 21
63028418 TTTTATGTTG
* *
63028428 CTCTTCTTCCCTCGCTGTAGC
1 CTCTACTTCCCTCGCTGCAGC
63028449 CTCTACTTCCCTCGCTGCAGC
1 CTCTACTTCCCTCGCTGCAGC
* *
63028470 CTCTGCTTCTCTCGCTGC
1 CTCTACTTCCCTCGCTGC
63028488 CGCATCTGCT
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 35 1.00
ACGTcount: A:0.05, C:0.45, G:0.15, T:0.35
Consensus pattern (21 bp):
CTCTACTTCCCTCGCTGCAGC
Found at i:63028495 original size:21 final size:21
Alignment explanation
Indices: 63028433--63028498 Score: 78
Period size: 21 Copynumber: 3.1 Consensus size: 21
63028423 TGTTGCTCTT
* * *
63028433 CTTCCCTCGCTGTAGCCTCTA
1 CTTCCCTCGCTGCAGCATCTG
*
63028454 CTTCCCTCGCTGCAGCCTCTG
1 CTTCCCTCGCTGCAGCATCTG
* *
63028475 CTTCTCTCGCTGCCGCATCTG
1 CTTCCCTCGCTGCAGCATCTG
63028496 CTT
1 CTT
63028499 TAAGCTGCTG
Statistics
Matches: 40, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 40 1.00
ACGTcount: A:0.06, C:0.44, G:0.17, T:0.33
Consensus pattern (21 bp):
CTTCCCTCGCTGCAGCATCTG
Found at i:63033741 original size:9 final size:9
Alignment explanation
Indices: 63033724--63034008 Score: 224
Period size: 9 Copynumber: 32.8 Consensus size: 9
63033714 TATGTATTAA
*
63033724 GTAAATTAT
1 GTAAGTTAT
63033733 GTAAGTTAT
1 GTAAGTTAT
*
63033742 GTACGTGTA-
1 GTAAGT-TAT
*
63033751 -TAAGCTAT
1 GTAAGTTAT
63033759 GTAAGTTAT
1 GTAAGTTAT
*
63033768 GT-A-TTAA
1 GTAAGTTAT
*
63033775 GTAAGCTAT
1 GTAAGTTAT
*
63033784 GTAAGTTGT
1 GTAAGTTAT
63033793 GT-A-TTAT
1 GTAAGTTAT
63033800 GTAAGTTAT
1 GTAAGTTAT
63033809 GTAAGTTAT
1 GTAAGTTAT
** *
63033818 CAAAGTAAT
1 GTAAGTTAT
*
63033827 GTATGTTAT
1 GTAAGTTAT
63033836 GTAAG-T-T
1 GTAAGTTAT
63033843 GTAAGTTAT
1 GTAAGTTAT
*
63033852 -TATGTATTAT
1 GTAAG--TTAT
63033862 GTAAGTTAT
1 GTAAGTTAT
63033871 GTAAGTTAT
1 GTAAGTTAT
63033880 GT-A-TTAT
1 GTAAGTTAT
*
63033887 GTAGGTTAT
1 GTAAGTTAT
*
63033896 GTAAGTTGT
1 GTAAGTTAT
*
63033905 GTAAGATAT
1 GTAAGTTAT
*
63033914 TTAAGTTAT
1 GTAAGTTAT
*
63033923 GTAAGTTTT
1 GTAAGTTAT
63033932 GT-A-TTAT
1 GTAAGTTAT
63033939 GTAAGTTAT
1 GTAAGTTAT
63033948 GTAAGTTAT
1 GTAAGTTAT
* *
63033957 GTATGCTAT
1 GTAAGTTAT
63033966 GT-A-TTAT
1 GTAAGTTAT
63033973 GTAAGTTGTTAT
1 GTAA---GTTAT
*
63033985 GTTA-TTAT
1 GTAAGTTAT
63033993 GTAAGTTAT
1 GTAAGTTAT
*
63034002 GCAAGTT
1 GTAAGTT
63034009 TATATATAAG
Statistics
Matches: 216, Mismatches: 38, Indels: 44
0.72 0.13 0.15
Matches are distributed among these distances:
7 34 0.16
8 23 0.11
9 143 0.66
10 6 0.03
11 3 0.01
12 7 0.03
ACGTcount: A:0.31, C:0.02, G:0.21, T:0.46
Consensus pattern (9 bp):
GTAAGTTAT
Found at i:63033744 original size:25 final size:25
Alignment explanation
Indices: 63033713--63033817 Score: 124
Period size: 25 Copynumber: 4.2 Consensus size: 25
63033703 TGATATATAT
**
63033713 TTATGTATTAAGTAAATTATGTAAG
1 TTATGTATTAAGTAAGCTATGTAAG
63033738 TTATGTACGTGT-A-TAAGCTATGTAAG
1 TTATGTA--T-TAAGTAAGCTATGTAAG
63033764 TTATGTATTAAGTAAGCTATGTAAG
1 TTATGTATTAAGTAAGCTATGTAAG
* * *
63033789 TTGTGTATTATGTAAGTTATGTAAG
1 TTATGTATTAAGTAAGCTATGTAAG
63033814 TTAT
1 TTAT
63033818 CAAAGTAATG
Statistics
Matches: 69, Mismatches: 6, Indels: 10
0.81 0.07 0.12
Matches are distributed among these distances:
23 1 0.01
24 2 0.03
25 45 0.65
26 18 0.26
27 2 0.03
28 1 0.01
ACGTcount: A:0.33, C:0.03, G:0.20, T:0.44
Consensus pattern (25 bp):
TTATGTATTAAGTAAGCTATGTAAG
Found at i:63033830 original size:34 final size:35
Alignment explanation
Indices: 63033729--63033979 Score: 179
Period size: 34 Copynumber: 7.3 Consensus size: 35
63033719 ATTAAGTAAA
*
63033729 TTATGTAAGTTATGTACGTGTA--TAAGCT-ATGTAAG
1 TTATGTAAGTTATGTAAGT-TATGTAAG-TAATGT-AG
* * **
63033764 TTATGT-A-TTAAGTAAGCTATGTAAGTTGTGTA-
1 TTATGTAAGTTATGTAAGTTATGTAAGTAATGTAG
**
63033796 TTATGTAAGTTATGTAAGTTATCAAAGTAATGTATG
1 TTATGTAAGTTATGTAAGTTATGTAAGTAATGTA-G
*
63033832 TTATGTAAG-T-TGTAAGTTAT-TATGTATTATGTAAG
1 TTATGTAAGTTATGTAAGTTATGTAAGTA--ATGT-AG
* *
63033867 TTATGTAAGTTATGT-A-TTATGTAGGTTATGTAAG
1 TTATGTAAGTTATGTAAGTTATGTAAGTAATGT-AG
* * * **
63033901 TTGTGTAAGATATTTAAGTTATGTAAGTTTTGTA-
1 TTATGTAAGTTATGTAAGTTATGTAAGTAATGTAG
*
63033935 TTATGTAAGTTATGTAAGTTATGTATGCT-ATGTA-
1 TTATGTAAGTTATGTAAGTTATGTAAG-TAATGTAG
63033969 TTATGTAAGTT
1 TTATGTAAGTT
63033980 GTTATGTTAT
Statistics
Matches: 176, Mismatches: 24, Indels: 33
0.76 0.10 0.14
Matches are distributed among these distances:
32 8 0.05
33 14 0.08
34 94 0.53
35 28 0.16
36 29 0.16
37 3 0.02
ACGTcount: A:0.31, C:0.02, G:0.21, T:0.46
Consensus pattern (35 bp):
TTATGTAAGTTATGTAAGTTATGTAAGTAATGTAG
Found at i:63033847 original size:43 final size:43
Alignment explanation
Indices: 63033757--63033981 Score: 117
Period size: 43 Copynumber: 5.5 Consensus size: 43
63033747 TGTATAAGCT
* * *
63033757 ATGTAAGTTATGT-A-TTAAGTAAGCTATGTAAGTTGTGT-A-TT
1 ATGTAAGTTATGTAAGTT--GTAAGTTATGTAAGTTATGTAAGTA
* * *
63033798 ATGTAAGTTATGTAAGTTATCAAAGTAATGTATGTTATGTAAGT-
1 ATGTAAGTTATGTAAGTTGT--AAGTTATGTAAGTTATGTAAGTA
*
63033842 -TGTAAGTTAT-T-A--TGT-A-TTATGTAAGTTATGTAAGTT
1 ATGTAAGTTATGTAAGTTGTAAGTTATGTAAGTTATGTAAGTA
* * * * *
63033878 ATGT-A-TTATGTAGGTTATGTAAGTTGTGTAAGATATTTAAGTT
1 ATGTAAGTTATGTAAG-T-TGTAAGTTATGTAAGTTATGTAAGTA
* * *
63033921 ATGTAAGTTTTGT-ATTATGTAAGTTATGTAAGTTATGTATGCT-
1 ATGTAAGTTATGTAAGT-TGTAAGTTATGTAAGTTATGTAAG-TA
63033964 ATGT-A-TTATGTAAGTTGT
1 ATGTAAGTTATGTAAGTTGT
63033982 TATGTTATTA
Statistics
Matches: 143, Mismatches: 21, Indels: 40
0.70 0.10 0.20
Matches are distributed among these distances:
35 21 0.15
36 3 0.02
37 3 0.02
39 2 0.01
41 26 0.18
42 6 0.04
43 73 0.51
44 3 0.02
45 6 0.04
ACGTcount: A:0.31, C:0.01, G:0.21, T:0.46
Consensus pattern (43 bp):
ATGTAAGTTATGTAAGTTGTAAGTTATGTAAGTTATGTAAGTA
Found at i:63033856 original size:19 final size:19
Alignment explanation
Indices: 63033832--63033870 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
63033822 GTAATGTATG
63033832 TTATGTAAGT-TGTAAGTTA
1 TTATGT-AGTATGTAAGTTA
*
63033851 TTATGTATTATGTAAGTTA
1 TTATGTAGTATGTAAGTTA
63033870 T
1 T
63033871 GTAAGTTATG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 2 0.11
19 16 0.89
ACGTcount: A:0.31, C:0.00, G:0.18, T:0.51
Consensus pattern (19 bp):
TTATGTAGTATGTAAGTTA
Found at i:63033885 original size:25 final size:25
Alignment explanation
Indices: 63033728--63034008 Score: 193
Period size: 25 Copynumber: 10.8 Consensus size: 25
63033718 TATTAAGTAA
* *
63033728 ATTATGTAAGTTATGTACGTGTAT-A
1 ATTATGTAAGTTATGTAAGT-TATGT
* *
63033753 AGCTATGTAAGTTATGT-A-TTAAGT
1 A-TTATGTAAGTTATGTAAGTTATGT
* *
63033777 AAGCTATGTAAGTTGTGT-A-TTATGT
1 -A-TTATGTAAGTTATGTAAGTTATGT
** *
63033802 AAGTTATGTAAGTTATCAAAGTAATGT
1 -A-TTATGTAAGTTATGTAAGTTATGT
63033829 ATGTTATGTAAG-T-TGTAAGTTATTATGT
1 A--TTATGTAAGTTATGTAAG---TTATGT
63033857 ATTATGTAAGTTATGTAAGTTATGT
1 ATTATGTAAGTTATGTAAGTTATGT
* *
63033882 ATTATGTAGGTTATGTAAGTTGTGT
1 ATTATGTAAGTTATGTAAGTTATGT
* * *
63033907 AAGATATTTAAGTTATGTAAGTTTTGT
1 -A-TTATGTAAGTTATGTAAGTTATGT
63033934 ATTATGTAAGTTATGTAAGTTATGT
1 ATTATGTAAGTTATGTAAGTTATGT
63033959 ATGCTATGT-A-TTATGTAAGTTGTTATGTT
1 AT--TATGTAAGTTATGTAA---GTTATG-T
*
63033988 ATTATGTAAGTTATGCAAGTT
1 ATTATGTAAGTTATGTAAGTT
63034009 TATATATAAG
Statistics
Matches: 211, Mismatches: 24, Indels: 41
0.76 0.09 0.15
Matches are distributed among these distances:
23 2 0.01
24 1 0.00
25 101 0.48
26 32 0.15
27 46 0.22
28 19 0.09
29 10 0.05
ACGTcount: A:0.31, C:0.02, G:0.21, T:0.46
Consensus pattern (25 bp):
ATTATGTAAGTTATGTAAGTTATGT
Found at i:63034106 original size:16 final size:16
Alignment explanation
Indices: 63034082--63034136 Score: 55
Period size: 16 Copynumber: 3.7 Consensus size: 16
63034072 TATAAAATTT
*
63034082 TTATATAAGTTATGTA
1 TTATGTAAGTTATGTA
63034098 TTATGTAAG----GTA
1 TTATGTAAGTTATGTA
**
63034110 ACATGTAAGTTATGTA
1 TTATGTAAGTTATGTA
63034126 TTATGTAAGTT
1 TTATGTAAGTT
63034137 TACATATAAG
Statistics
Matches: 30, Mismatches: 5, Indels: 8
0.70 0.12 0.19
Matches are distributed among these distances:
12 10 0.33
16 20 0.67
ACGTcount: A:0.35, C:0.02, G:0.18, T:0.45
Consensus pattern (16 bp):
TTATGTAAGTTATGTA
Found at i:63034119 original size:28 final size:28
Alignment explanation
Indices: 63034084--63034153 Score: 104
Period size: 28 Copynumber: 2.5 Consensus size: 28
63034074 TAAAATTTTT
63034084 ATATAAGTTATGTATTATGTAAGGTAAC
1 ATATAAGTTATGTATTATGTAAGGTAAC
* * *
63034112 ATGTAAGTTATGTATTATGTAAGTTTAC
1 ATATAAGTTATGTATTATGTAAGGTAAC
63034140 ATATAAGTTTATGT
1 ATATAAG-TTATGT
63034154 GATAGTTATG
Statistics
Matches: 37, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
28 31 0.84
29 6 0.16
ACGTcount: A:0.36, C:0.03, G:0.17, T:0.44
Consensus pattern (28 bp):
ATATAAGTTATGTATTATGTAAGGTAAC
Found at i:63034389 original size:53 final size:53
Alignment explanation
Indices: 63034331--63034480 Score: 255
Period size: 53 Copynumber: 2.8 Consensus size: 53
63034321 ATATATACTT
*
63034331 AAATTTTAGTAAGTAATGCATTTAAGTAACATATTTAAGTAATAAATTTAAAC
1 AAATTTTAGTAAGTAATGTATTTAAGTAACATATTTAAGTAATAAATTTAAAC
*
63034384 AAATTTTAGTAAGTAATGTATTTAAGTAACATATTTAAGTAATAAATTTAACC
1 AAATTTTAGTAAGTAATGTATTTAAGTAACATATTTAAGTAATAAATTTAAAC
* **
63034437 AAATTTTAGTAAGTAGTGTATTTAAGTAATTTATTTAAGTAATA
1 AAATTTTAGTAAGTAATGTATTTAAGTAACATATTTAAGTAATA
63034481 TATTCAAGTA
Statistics
Matches: 92, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
53 92 1.00
ACGTcount: A:0.45, C:0.04, G:0.11, T:0.41
Consensus pattern (53 bp):
AAATTTTAGTAAGTAATGTATTTAAGTAACATATTTAAGTAATAAATTTAAAC
Found at i:63034411 original size:13 final size:13
Alignment explanation
Indices: 63034393--63034504 Score: 100
Period size: 13 Copynumber: 8.5 Consensus size: 13
63034383 CAAATTTTAG
*
63034393 TAAGTAATGTATT
1 TAAGTAATATATT
*
63034406 TAAGTAACATATT
1 TAAGTAATATATT
*
63034419 TAAGTAATAAATT
1 TAAGTAATATATT
** *
63034432 TAACCAA-ATTTT
1 TAAGTAATATATT
* *
63034444 AGTAAGTAGTGTATT
1 --TAAGTAATATATT
*
63034459 TAAGTAATTTATT
1 TAAGTAATATATT
63034472 TAAGTAATATATT
1 TAAGTAATATATT
*
63034485 CAAGTAATATATT
1 TAAGTAATATATT
*
63034498 AAAGTAA
1 TAAGTAA
63034505 ATTTTAGTAA
Statistics
Matches: 78, Mismatches: 18, Indels: 6
0.76 0.18 0.06
Matches are distributed among these distances:
12 3 0.04
13 68 0.87
14 4 0.05
15 3 0.04
ACGTcount: A:0.45, C:0.04, G:0.11, T:0.41
Consensus pattern (13 bp):
TAAGTAATATATT
Found at i:63034531 original size:66 final size:66
Alignment explanation
Indices: 63034393--63034531 Score: 161
Period size: 66 Copynumber: 2.1 Consensus size: 66
63034383 CAAATTTTAG
* * ** * *
63034393 TAAGTAATGTATTTAAGTAACATATTTAAGTAATAAATTTAACCAAATTTTAGTAAGTAGTGTAT
1 TAAGTAATGTATTTAAGTAACATATTCAAGTAATAAATTAAACCAAATTTTAGTAAAAAATATAT
63034458 T
66 T
* * * ** *
63034459 TAAGTAATTTATTTAAGTAATATATTCAAGTAATATATTAAAGTAAATTTTAGTAAAAAATATGT
1 TAAGTAATGTATTTAAGTAACATATTCAAGTAATAAATTAAACCAAATTTTAGTAAAAAATATAT
63034524 T
66 T
*
63034525 TTAGTAA
1 TAAGTAA
63034532 GTAATGTAAG
Statistics
Matches: 60, Mismatches: 13, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
66 60 1.00
ACGTcount: A:0.45, C:0.03, G:0.11, T:0.42
Consensus pattern (66 bp):
TAAGTAATGTATTTAAGTAACATATTCAAGTAATAAATTAAACCAAATTTTAGTAAAAAATATAT
T
Found at i:63035366 original size:229 final size:227
Alignment explanation
Indices: 63034982--63035479 Score: 572
Period size: 229 Copynumber: 2.2 Consensus size: 227
63034972 AAATCTCAAG
* * * * **
63034982 ACCAACACGCAGCGTTCTGGTCTTGATGTATATTAGAATTAGTGGCGTTTACGAACAAACGCCGG
1 ACCAAAACGCAGCGTTTTGGTCTTGATGTATACTAGAATTAGTGGCGTTTAAGAACAAACGCCAC
* * * * *
63035047 TAATGCATAGTATTAGCGGCGCTTAGCAAAAGCGTCGCAAAAGATGTTAACCAAAACGCAGAGTT
66 TAAAGCATAGTAATAGCAGCGCTTAGCAAAAGCGCCGCAAAAGATCTTAACCAAAACGCAGAGTT
* * *
63035112 TGGTCTTGATGTATATTACAATTAGTGGCGCTTATAAAGAAAACACCGCTAATGTATAGTATTAG
131 TGGTCTTGAGGTATATTACAATTAGTGGCGCTTAT-AAGAAAACACCGCTAAAGTATAGTAGTAG
63035177 CGGCG-CAGAGCGTTAAA-CGCCGCAAAACATCTTA
195 CGGCGTCAGAG-G--AAAGCGCCGCAAAACATCTTA
* *
63035211 ACCAAAACGCAGCGTTTTGGTCTTGATGTATACTATAATTAGTGGCGTTTAAGGA-AAACGCCAC
1 ACCAAAACGCAGCGTTTTGGTCTTGATGTATACTAGAATTAGTGGCGTTTAAGAACAAACGCCAC
* * *** * * **
63035275 TAAAGCATAGTAATAGCAGCGTTTGGTGGTAAGCGCCTCAAAATATCTTAACCAAAACGTGGAGT
66 TAAAGCATAGTAATAGCAGCGCTTAG-CAAAAGCGCCGCAAAAGATCTTAACCAAAACGCAGAGT
* ** *
63035340 TTGGTCTTGAGGTATATTAGAATTAGTGGCGCTTATTGGAAAACGCCGCTAAAGTATAGTAGTAG
130 TTGGTCTTGAGGTATATTACAATTAGTGGCGCTTATAAGAAAACACCGCTAAAGTATAGTAGTAG
** * **
63035405 CGGCGTTTGTGGAAAGCGCCGCAAAGTATCTTA
195 CGGCGTCAGAGGAAAGCGCCGCAAAACATCTTA
* * * * *
63035438 ACCAAAACGCAGAG-TTTGGCCTTGACGTATATTAGAGTTAGT
1 ACCAAAACGCAGCGTTTTGGTCTTGATGTATACTAGAATTAGT
63035480 TCTTGATGTA
Statistics
Matches: 226, Mismatches: 40, Indels: 9
0.82 0.15 0.03
Matches are distributed among these distances:
226 26 0.12
227 28 0.12
228 58 0.26
229 114 0.50
ACGTcount: A:0.32, C:0.18, G:0.24, T:0.27
Consensus pattern (227 bp):
ACCAAAACGCAGCGTTTTGGTCTTGATGTATACTAGAATTAGTGGCGTTTAAGAACAAACGCCAC
TAAAGCATAGTAATAGCAGCGCTTAGCAAAAGCGCCGCAAAAGATCTTAACCAAAACGCAGAGTT
TGGTCTTGAGGTATATTACAATTAGTGGCGCTTATAAGAAAACACCGCTAAAGTATAGTAGTAGC
GGCGTCAGAGGAAAGCGCCGCAAAACATCTTA
Found at i:63035440 original size:113 final size:112
Alignment explanation
Indices: 63034963--63035479 Score: 511
Period size: 114 Copynumber: 4.5 Consensus size: 112
63034953 TTTACTACAC
* * * *
63034963 AGCGCCGCAAAATCTC-AAGACCAACACGCAGCGTTCTGGTCTTGATGTATATTAGAATTAGTGG
1 AGCGCCGCAAAATATCTTA-ACCAAAACGCAGAGTT-TGGTCTTGATGTATATTAGAATTAGTGG
* * * * * **
63035027 CGTTTACGAACAAACGCCGGTAATGCATAGTATTAGCGGCGCTTAG-CAAA
64 CGCTTAAGGA-AAACGCCGCTAAAGCATAGTATTAGCGGCG-TTAGTGGAA
* * * *
63035077 AGCGTCGCAAAAGATGTTAACCAAAACGCAGAGTTTGGTCTTGATGTATATTACAATTAGTGGCG
1 AGCGCCGCAAAATATCTTAACCAAAACGCAGAGTTTGGTCTTGATGTATATTAGAATTAGTGGCG
* * * * * *
63035142 CTTATAAAGAAAACACCGCTAATGTATAGTATTAGCGGCG-CAGAGCGTTAA
66 C-T-TAAGGAAAACGCCGCTAAAGCATAGTATTAGCGGCGTTAGTG-G--AA
* * * *
63035193 A-CGCCGCAAAACATCTTAACCAAAACGCAGCGTTTTGGTCTTGATGTATACTATAATTAGTGGC
1 AGCGCCGCAAAATATCTTAACCAAAACGCAGAG-TTTGGTCTTGATGTATATTAGAATTAGTGGC
* * * * * *
63035257 GTTTAAGGAAAACGCCACTAAAGCATAGTAATAGCAGCGTTTGGTGGTA
65 GCTTAAGGAAAACGCCGCTAAAGCATAGTATTAGCGGCG-TTAGTGGAA
* ** *
63035306 AGCGCCTCAAAATATCTTAACCAAAACGTGGAGTTTGGTCTTGAGGTATATTAGAATTAGTGGCG
1 AGCGCCGCAAAATATCTTAACCAAAACGCAGAGTTTGGTCTTGATGTATATTAGAATTAGTGGCG
* * * *
63035371 CTTATTGGAAAACGCCGCTAAAGTATAGTAGTAGCGGCGTTTGTGGAA
66 CTTA-AGGAAAACGCCGCTAAAGCATAGTATTAGCGGCGTTAGTGGAA
* * * *
63035419 AGCGCCGCAAAGTATCTTAACCAAAACGCAGAGTTTGGCCTTGACGTATATTAGAGTTAGT
1 AGCGCCGCAAAATATCTTAACCAAAACGCAGAGTTTGGTCTTGATGTATATTAGAATTAGT
63035480 TCTTGATGTA
Statistics
Matches: 332, Mismatches: 59, Indels: 25
0.80 0.14 0.06
Matches are distributed among these distances:
112 2 0.01
113 124 0.37
114 138 0.42
115 33 0.10
116 35 0.11
ACGTcount: A:0.32, C:0.18, G:0.24, T:0.26
Consensus pattern (112 bp):
AGCGCCGCAAAATATCTTAACCAAAACGCAGAGTTTGGTCTTGATGTATATTAGAATTAGTGGCG
CTTAAGGAAAACGCCGCTAAAGCATAGTATTAGCGGCGTTAGTGGAA
Found at i:63037282 original size:21 final size:21
Alignment explanation
Indices: 63037256--63037323 Score: 93
Period size: 21 Copynumber: 3.3 Consensus size: 21
63037246 CAACAACTTA
* *
63037256 AAGCAGAGGCGGCAGCGAGGG
1 AAGCAGAGGCCGCAGCGAGAG
**
63037277 AAGCAGAGGCTACAGCGAGAG
1 AAGCAGAGGCCGCAGCGAGAG
63037298 AA-CAGAGGCCGCAGCGAGAG
1 AAGCAGAGGCCGCAGCGAGAG
63037318 AAGCAG
1 AAGCAG
63037324 CGATAGAAGC
Statistics
Matches: 41, Mismatches: 5, Indels: 2
0.85 0.10 0.04
Matches are distributed among these distances:
20 18 0.44
21 23 0.56
ACGTcount: A:0.35, C:0.21, G:0.43, T:0.01
Consensus pattern (21 bp):
AAGCAGAGGCCGCAGCGAGAG
Found at i:63037824 original size:42 final size:42
Alignment explanation
Indices: 63037771--63037978 Score: 196
Period size: 42 Copynumber: 4.9 Consensus size: 42
63037761 GTTTATGAAA
* *
63037771 TAAGCGACGCTAAATAACACTACTTTTAGCGGCGTTTT-TGACC
1 TAAGCGCCGCTAAAGAACA-TACTTTTAGCGGCGTTTTCT-ACC
* *
63037814 -AAGCGCCGCTATAGAACATTACTTTTAGCGGCGTTTTCTTCC
1 TAAGCGCCGCTAAAGAACA-TACTTTTAGCGGCGTTTTCTACC
* *
63037856 TAAGCGCCACTAAAGAACATGA-TCTTTAGCGGCGTTTTCT-CG
1 TAAGCGCCGCTAAAGAACAT-ACT-TTTAGCGGCGTTTTCTACC
* *
63037898 TAAGCGTCGCTAAAGAACATGA-TCTTTAGCGGCGTTTGT-TTCC
1 TAAGCGCCGCTAAAGAACAT-ACT-TTTAGCGGCGTTT-TCTACC
*
63037941 TTAGCGCCGCTAAAGAACATGA-TCTTTAGCGGCGTTTT
1 TAAGCGCCGCTAAAGAACAT-ACT-TTTAGCGGCGTTTT
63037979 TTTCTGTAAG
Statistics
Matches: 146, Mismatches: 13, Indels: 13
0.85 0.08 0.08
Matches are distributed among these distances:
42 75 0.51
43 71 0.49
ACGTcount: A:0.25, C:0.23, G:0.21, T:0.31
Consensus pattern (42 bp):
TAAGCGCCGCTAAAGAACATACTTTTAGCGGCGTTTTCTACC
Found at i:63037869 original size:85 final size:84
Alignment explanation
Indices: 63037795--63037979 Score: 250
Period size: 85 Copynumber: 2.2 Consensus size: 84
63037785 TAACACTACT
* *
63037795 TTTAGCGGCGTTTTT-GACCAAGCGCCGCTATAGAACATTA-CTTTTAGCGGCGTTT-TCTTCCT
1 TTTAGCGGCGTTTTTCG--CAAGCGCCGCTAAAGAACATGATC-TTTAGCGGCGTTTGT-TTCCT
*
63037857 AAGCGCCACTAAAGAACATGATC
62 AAGCGCCGCTAAAGAACATGATC
* * *
63037880 TTTAGCGGCGTTTTCTCGTAAGCGTCGCTAAAGAACATGATCTTTAGCGGCGTTTGTTTCCTTAG
1 TTTAGCGGCGTTTT-TCGCAAGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTTGTTTCCTAAG
63037945 CGCCGCTAAAGAACATGATC
65 CGCCGCTAAAGAACATGATC
63037965 TTTAGCGGCGTTTTT
1 TTTAGCGGCGTTTTT
63037980 TTCTGTAAGC
Statistics
Matches: 90, Mismatches: 6, Indels: 9
0.86 0.06 0.09
Matches are distributed among these distances:
84 1 0.01
85 85 0.94
86 3 0.03
87 1 0.01
ACGTcount: A:0.22, C:0.23, G:0.22, T:0.33
Consensus pattern (84 bp):
TTTAGCGGCGTTTTTCGCAAGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTTGTTTCCTAAGC
GCCGCTAAAGAACATGATC
Found at i:63037875 original size:43 final size:42
Alignment explanation
Indices: 63037795--63037999 Score: 252
Period size: 43 Copynumber: 4.8 Consensus size: 42
63037785 TAACACTACT
* * *
63037795 TTTAGCGGCGTTTTTGACC-AAGCGCCGCTATAGAACATTA-C
1 TTTAGCGGCGTTTTT-TCCTAAGCGCCGCTAAAGAACATGATC
*
63037836 TTTTAGCGGCGTTTTCTTCCTAAGCGCCACTAAAGAACATGATC
1 -TTTAGCGGCGTTTT-TTCCTAAGCGCCGCTAAAGAACATGATC
* * *
63037880 TTTAGCGGCGTTTTCTCGTAAGCGTCGCTAAAGAACATGATC
1 TTTAGCGGCGTTTTTTCCTAAGCGCCGCTAAAGAACATGATC
*
63037922 TTTAGCGGCGTTTGTTTCCTTAGCGCCGCTAAAGAACATGATC
1 TTTAGCGGCGTTT-TTTCCTAAGCGCCGCTAAAGAACATGATC
* *
63037965 TTTAGCGGCGTTTTTTTCTGTAAGCGCCGCAAAAG
1 TTTAGCGGCG-TTTTTTC-CTAAGCGCCGCTAAAG
63038000 TTAGCGACGT
Statistics
Matches: 142, Mismatches: 15, Indels: 10
0.85 0.09 0.06
Matches are distributed among these distances:
42 53 0.37
43 72 0.51
44 17 0.12
ACGTcount: A:0.23, C:0.23, G:0.22, T:0.32
Consensus pattern (42 bp):
TTTAGCGGCGTTTTTTCCTAAGCGCCGCTAAAGAACATGATC
Found at i:63039319 original size:9 final size:9
Alignment explanation
Indices: 63039305--63039335 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
63039295 GTTAAACGAA
63039305 TCGAGTTAT
1 TCGAGTTAT
*
63039314 TCGAGTTAA
1 TCGAGTTAT
63039323 TCGAGTTAT
1 TCGAGTTAT
63039332 TCGA
1 TCGA
63039336 ATCAACTCGA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.26, C:0.13, G:0.23, T:0.39
Consensus pattern (9 bp):
TCGAGTTAT
Found at i:63039405 original size:9 final size:9
Alignment explanation
Indices: 63039388--63039424 Score: 65
Period size: 9 Copynumber: 4.1 Consensus size: 9
63039378 TGAGTTTTTG
63039388 AATTCGAAT
1 AATTCGAAT
*
63039397 AACTCGAAT
1 AATTCGAAT
63039406 AATTCGAAT
1 AATTCGAAT
63039415 AATTCGAAT
1 AATTCGAAT
63039424 A
1 A
63039425 TCAAACTATA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
9 26 1.00
ACGTcount: A:0.46, C:0.14, G:0.11, T:0.30
Consensus pattern (9 bp):
AATTCGAAT
Found at i:63041961 original size:84 final size:82
Alignment explanation
Indices: 63041809--63042071 Score: 252
Period size: 83 Copynumber: 3.2 Consensus size: 82
63041799 GGCATTTCTC
* * * * * *
63041809 AAAAAACGCCAGTATCCAAATTTTTT-CACTAAAGAAACGGCGTCGCATTGAGAGACTTAATAAA
1 AAAAAACGCCACTATCC-AATTTTTTCCA-TAAATAAACGGCGACGCATTGGGAAATTTAATAAA
63041873 TCATTTGCGGCGTTTTCCT
64 TCATTTGCGGCGTTTTCCT
* *
63041892 AAAAAACGCCACTATCCAATTTTATTTCCAGTACATAAACGGCGCCG-ATTGGGAAATTTAATAA
1 AAAAAACGCCACTATCCAA-TTT-TTTCCA-TAAATAAACGGCGACGCATTGGGAAATTTAATAA
**
63041956 ATCATTTGC--CGAATTCCAT
63 ATCATTTGCGGCGTTTTCC-T
* *
63041975 AAAAAACGCCACTAT-CAATTTTGTCCA-AATATGGAAACGGCGACGCATTGGCAAAATTTAATA
1 AAAAAACGCCACTATCCAATTTTTTCCATAA-AT--AAACGGCGACGCATTGG-GAAATTTAATA
* *
63042038 AGT-ATTTGCGGCGTTTTCTT
62 AATCATTTGCGGCGTTTTCCT
*
63042058 ACAAAACGCCACTA
1 AAAAAACGCCACTA
63042072 AAATATTTCA
Statistics
Matches: 150, Mismatches: 19, Indels: 22
0.79 0.10 0.12
Matches are distributed among these distances:
78 1 0.01
79 2 0.01
80 5 0.03
81 13 0.09
82 22 0.15
83 61 0.41
84 31 0.21
85 15 0.10
ACGTcount: A:0.35, C:0.21, G:0.16, T:0.28
Consensus pattern (82 bp):
AAAAAACGCCACTATCCAATTTTTTCCATAAATAAACGGCGACGCATTGGGAAATTTAATAAATC
ATTTGCGGCGTTTTCCT
Found at i:63043695 original size:108 final size:106
Alignment explanation
Indices: 63043501--63043700 Score: 292
Period size: 108 Copynumber: 1.9 Consensus size: 106
63043491 TGGATTGAGA
* * *
63043501 TTTAAGAGAATATTTGGCTATTTGGTCAAACGAGAAATCAAAACCTAGCACATTAGGGCACGTTT
1 TTTAAAAGAATATTTGGCTATTTGATCAAACGAGAAATCAAAACCTAGAACATTAGGGCACGTTT
* *
63043566 CCTCGAATTTCCAAACACAAAATATTGTCTTACTTCGAAAT
66 CCTCGAATCTCCAAACACAAAACATTGTCTTACTTCGAAAT
* *
63043607 TTTAAAAGGATATTTGGCTATTTGATCGAACGAGAAAAATCAAAACCTAGAACATTAGGGCACGT
1 TTTAAAAGAATATTTGGCTATTTGATCAAACGAG--AAATCAAAACCTAGAACATTAGGGCACGT
* **
63043672 TTTCTCGAATCTCCAAATGCAAAACATTG
64 TTCCTCGAATCTCCAAACACAAAACATTG
63043701 CCTTTATTAT
Statistics
Matches: 82, Mismatches: 10, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
106 30 0.37
108 52 0.63
ACGTcount: A:0.37, C:0.18, G:0.16, T:0.29
Consensus pattern (106 bp):
TTTAAAAGAATATTTGGCTATTTGATCAAACGAGAAATCAAAACCTAGAACATTAGGGCACGTTT
CCTCGAATCTCCAAACACAAAACATTGTCTTACTTCGAAAT
Found at i:63046209 original size:44 final size:44
Alignment explanation
Indices: 63046113--63046212 Score: 107
Period size: 44 Copynumber: 2.3 Consensus size: 44
63046103 GTCTAATGTG
* * * *
63046113 ATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTATTACTTTA
1 ATCTGCTCCACTACAAATTCAGAGAGATAAGATCTATTACTTCA
*
63046157 ATCCGCTCCACTACAAATTCAG-GAAGAT-AGAAT-TATTGACTTCA
1 ATCTGCTCCACTACAAATTCAGAG-AGATAAG-ATCTATT-ACTTCA
63046201 ATCTGCTCCACT
1 ATCTGCTCCACT
63046213 GGAACCTCAG
Statistics
Matches: 47, Mismatches: 6, Indels: 6
0.80 0.10 0.10
Matches are distributed among these distances:
43 7 0.15
44 40 0.85
ACGTcount: A:0.32, C:0.24, G:0.13, T:0.31
Consensus pattern (44 bp):
ATCTGCTCCACTACAAATTCAGAGAGATAAGATCTATTACTTCA
Found at i:63046250 original size:44 final size:44
Alignment explanation
Indices: 63046202--63046365 Score: 204
Period size: 44 Copynumber: 3.7 Consensus size: 44
63046192 TTGACTTCAA
* * *
63046202 TCTGCTCCACTGGAACCTCAGGGAGATAAGATTTGCTTTT-TCAG
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGACTTG-TTTTCTCAG
* *** *
63046246 TCTGCCCCACTATGACTTCAGGGGGATAAGACTTGTTTTCTCAG
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTTTTCTCAG
* *
63046290 TCTGTTCCGCTGCAACTTCAGGGAGATAAGACTTGTTTTCTCAG
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTTTTCTCAG
* *
63046334 TCTGCTCCGCTGCAACTTCAAGGAGATAAGAC
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGAC
63046366 CAGATGCGAT
Statistics
Matches: 103, Mismatches: 16, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
43 4 0.04
44 99 0.96
ACGTcount: A:0.23, C:0.24, G:0.23, T:0.30
Consensus pattern (44 bp):
TCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTTTTCTCAG
Found at i:63046963 original size:87 final size:87
Alignment explanation
Indices: 63046813--63047028 Score: 362
Period size: 87 Copynumber: 2.5 Consensus size: 87
63046803 NNNNNNNNNN
*
63046813 TATCTTTAACCAGCTCCACTGCAACCGATGGAGGCAAGGCTTTGTTTTCGATCTGCTTCGCTGTT
1 TATCTTTAACCAGCTCCACTGCAACCGATGGAGGCAAGGCTTTGTTTTAGATCTGCTTCGCTGTT
63046878 AACGCAGGAAGGCAAGATCTGC
66 AACGCAGGAAGGCAAGATCTGC
* * *
63046900 TATCTTTAACCAGCTCCACTGCAATCGATGGAGGCAAGGCTTTATTTTTAG-TCTGCTTTGCTGT
1 TATCTTTAACCAGCTCCACTGCAACCGATGGAGGCAAGGCTTT-GTTTTAGATCTGCTTCGCTGT
* *
63046964 TAACGTAGGAAGGCAAGATCTGT
65 TAACGCAGGAAGGCAAGATCTGC
63046987 TATCTTTAACCAGCTCCACTGCAACCGATGGAGGCAAGGCTT
1 TATCTTTAACCAGCTCCACTGCAACCGATGGAGGCAAGGCTT
63047029 GATGTGATCT
Statistics
Matches: 121, Mismatches: 7, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
87 116 0.96
88 5 0.04
ACGTcount: A:0.24, C:0.24, G:0.23, T:0.29
Consensus pattern (87 bp):
TATCTTTAACCAGCTCCACTGCAACCGATGGAGGCAAGGCTTTGTTTTAGATCTGCTTCGCTGTT
AACGCAGGAAGGCAAGATCTGC
Found at i:63047107 original size:44 final size:43
Alignment explanation
Indices: 63047035--63047583 Score: 205
Period size: 44 Copynumber: 12.6 Consensus size: 43
63047025 GCTTGATGTG
* * *
63047035 ATCTACTCTACTGCAACTTCAGAGAGATAAGATCTATTATTTC
1 ATCTGCTCCACTGCAACTTCAGGGAGATAAGATCTATTATTTC
* ** *
63047078 AAT-TCGCTCCACTGCAACTTCAGGGAGATAGGAT-TATTGGCTAC
1 -ATCT-GCTCCACTGCAACTTCAGGGAGATAAGATCTATT-ATTTC
* * **
63047122 AATCTGCTCTACTGCAAAC-TCAGGGAGATAAGATTTACCATCTTC
1 -ATCTGCTCCACTGC-AACTTCAGGGAGATAAGATCTATTAT-TTC
* * * **
63047167 AGTCTGCCCCACTGCAACTTTAGGGGGATAAGA-CT-TGCTTCCTC
1 A-TCTGCTCCACTGCAACTTCAGGGAGATAAGATCTATTATT--TC
** * * * * * *
63047211 AGTCTGCTCGTCTGTAACCTCAGGGAGATAAGA-C-CTGATGTG
1 A-TCTGCTCCACTGCAACTTCAGGGAGATAAGATCTATTATTTC
* * *
63047253 ATCTACTCTACTGCAACTTCAGAGAGATAAGATCTATTATTTC
1 ATCTGCTCCACTGCAACTTCAGGGAGATAAGATCTATTATTTC
* **** *
63047296 GATCCGCTCCACTGCAACTTCAGGGAGATAAGAT-TACCGGCTAC
1 -ATCTGCTCCACTGCAACTTCAGGGAGATAAGATCTA-TTATTTC
* * **
63047340 AATCTGCTCCACTGTAAAC-TCAGAGAGATAAGAT-TCAACATCTTC
1 -ATCTGCTCCACTG-CAACTTCAGGGAGATAAGATCT-ATTAT-TTC
* *
63047385 AGTCTGCCCCACTGCAACTTCAGGGGGATAAGA-CT-TGCT-TCTTC
1 A-TCTGCTCCACTGCAACTTCAGGGAGATAAGATCTAT--TAT-TTC
* * ** * * * * * *
63047429 GGTCTGATCCGTTGCACCCTCAGGGAGATAAGA-C-CTGATGTG
1 -ATCTGCTCCACTGCAACTTCAGGGAGATAAGATCTATTATTTC
* ** * * *
63047471 ATCTACTTTACTGTAAAC-TCAGAGAGATAAAATCTATTATTTC
1 ATCTGCTCCACTG-CAACTTCAGGGAGATAAGATCTATTATTTC
* * ** *
63047514 AATCTGCTCCACTGCAACTTCAAGGAGATAGGAT-TATCGTCTAC
1 -ATCTGCTCCACTGCAACTTCAGGGAGATAAGATCTATTAT-TTC
*
63047558 AATCTGCTCCACTGCAACCTCAGGGA
1 -ATCTGCTCCACTGCAACTTCAGGGA
63047584 AAGAAAGATT
Statistics
Matches: 368, Mismatches: 105, Indels: 64
0.69 0.20 0.12
Matches are distributed among these distances:
41 43 0.12
42 8 0.02
43 24 0.07
44 232 0.63
45 61 0.17
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (43 bp):
ATCTGCTCCACTGCAACTTCAGGGAGATAAGATCTATTATTTC
Found at i:63047340 original size:218 final size:218
Alignment explanation
Indices: 63047028--63047583 Score: 873
Period size: 218 Copynumber: 2.6 Consensus size: 218
63047018 AGGCAAGGCT
*
63047028 TGATGTGATCTACTCTACTGCAACTTCAGAGAGATAAGATCTATTATTTCAATTCGCTCCACTGC
1 TGATGTGATCTACTCTACTGCAACTTCAGAGAGATAAGATCTATTATTTCAATCCGCTCCACTGC
* * *
63047093 AACTTCAGGGAGATAGGATTATTGGCTACAATCTGCTCTACTGCAAACTCAGGGAGATAAGATTT
66 AACTTCAGGGAGATAGGATTATCGGCTACAATCTGCTCCACTGCAAACTCAGGGAGATAAGATTC
* * *
63047158 ACCATCTTCAGTCTGCCCCACTGCAACTTTAGGGGGATAAGACTTGCTTCCTCAGTCTGCT-CGT
131 AACATCTTCAGTCTGCCCCACTGCAACTTCAGGGGGATAAGACTTGCTTCCTCAGTCTGATCCGT
*
63047222 CTGTAACCTCAGGGAGATAAGACC
196 -TGCAACCTCAGGGAGATAAGACC
*
63047246 TGATGTGATCTACTCTACTGCAACTTCAGAGAGATAAGATCTATTATTTCGATCCGCTCCACTGC
1 TGATGTGATCTACTCTACTGCAACTTCAGAGAGATAAGATCTATTATTTCAATCCGCTCCACTGC
* * * *
63047311 AACTTCAGGGAGATAAGATTACCGGCTACAATCTGCTCCACTGTAAACTCAGAGAGATAAGATTC
66 AACTTCAGGGAGATAGGATTATCGGCTACAATCTGCTCCACTGCAAACTCAGGGAGATAAGATTC
* *
63047376 AACATCTTCAGTCTGCCCCACTGCAACTTCAGGGGGATAAGACTTGCTTCTTCGGTCTGATCCGT
131 AACATCTTCAGTCTGCCCCACTGCAACTTCAGGGGGATAAGACTTGCTTCCTCAGTCTGATCCGT
*
63047441 TGCACCCTCAGGGAGATAAGACC
196 TGCAACCTCAGGGAGATAAGACC
* * * *
63047464 TGATGTGATCTACTTTACTGTAAAC-TCAGAGAGATAAAATCTATTATTTCAATCTGCTCCACTG
1 TGATGTGATCTACTCTACTG-CAACTTCAGAGAGATAAGATCTATTATTTCAATCCGCTCCACTG
* * *
63047528 CAACTTCAAGGAGATAGGATTATCGTCTACAATCTGCTCCACTGCAACCTCAGGGA
65 CAACTTCAGGGAGATAGGATTATCGGCTACAATCTGCTCCACTGCAAACTCAGGGA
63047584 AAGAAAGATT
Statistics
Matches: 308, Mismatches: 28, Indels: 4
0.91 0.08 0.01
Matches are distributed among these distances:
218 302 0.98
219 6 0.02
ACGTcount: A:0.28, C:0.24, G:0.19, T:0.28
Consensus pattern (218 bp):
TGATGTGATCTACTCTACTGCAACTTCAGAGAGATAAGATCTATTATTTCAATCCGCTCCACTGC
AACTTCAGGGAGATAGGATTATCGGCTACAATCTGCTCCACTGCAAACTCAGGGAGATAAGATTC
AACATCTTCAGTCTGCCCCACTGCAACTTCAGGGGGATAAGACTTGCTTCCTCAGTCTGATCCGT
TGCAACCTCAGGGAGATAAGACC
Found at i:63047658 original size:50 final size:50
Alignment explanation
Indices: 63047588--63047762 Score: 140
Period size: 50 Copynumber: 3.5 Consensus size: 50
63047578 CAGGGAAAGA
* * * * *
63047588 AAGATTCACTGTTGTGGCTTTAATCTTTTTAATTGCAATGTCAGAGAAAC
1 AAGATTCGCTGTCGTAGCTTTAATCTTTTTAACTGCAATATCAGAGAAAC
* * * * *
63047638 AAGATTCGCTGTCGTAGCTTTAATCTGTTTCACTAC-ATTTCCA-AGAAAGT
1 AAGATTCGCTGTCGTAGCTTTAATCTTTTTAACTGCAATAT-CAGAGAAA-C
* ** * * * * *
63047688 AAGATTCGCTGTTGCGGCTTTGATCTTTTAAACTGCAAAATCAGGGAAGC
1 AAGATTCGCTGTCGTAGCTTTAATCTTTTTAACTGCAATATCAGAGAAAC
*
63047738 AAGATT-GCCGTCGTAGCTTTAATCT
1 AAGATTCGCTGTCGTAGCTTTAATCT
63047763 GCTCCACTAC
Statistics
Matches: 94, Mismatches: 27, Indels: 9
0.72 0.21 0.07
Matches are distributed among these distances:
49 22 0.23
50 67 0.71
51 5 0.05
ACGTcount: A:0.28, C:0.18, G:0.19, T:0.35
Consensus pattern (50 bp):
AAGATTCGCTGTCGTAGCTTTAATCTTTTTAACTGCAATATCAGAGAAAC
Found at i:63047700 original size:100 final size:99
Alignment explanation
Indices: 63047582--63047773 Score: 258
Period size: 100 Copynumber: 1.9 Consensus size: 99
63047572 CAACCTCAGG
* * * **
63047582 GAAAGAAAGATTCACTGTTGTGGCTTTAATCTTTTTAATTGCAATGTCAGAGAAACAAGATTCGC
1 GAAAGAAAGATTCACTGTTGCGGCTTTAATCTTTTAAACTGCAAAATCAGAGAAACAAGATT-GC
* * *
63047647 TGTCGTAGCTTTAATCTGTTTCACTACATTTCCAA
65 CGTCGTAGCTTTAATCTGCTCCACTACATTTCCAA
* * * * *
63047682 GAAAGTAAGATTCGCTGTTGCGGCTTTGATCTTTTAAACTGCAAAATCAGGGAAGCAAGATTGCC
1 GAAAGAAAGATTCACTGTTGCGGCTTTAATCTTTTAAACTGCAAAATCAGAGAAACAAGATTGCC
63047747 GTCGTAGCTTTAATCTGCTCCACTACA
66 GTCGTAGCTTTAATCTGCTCCACTACA
63047774 CTGCCAGGGA
Statistics
Matches: 79, Mismatches: 13, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
99 27 0.34
100 52 0.66
ACGTcount: A:0.29, C:0.19, G:0.19, T:0.33
Consensus pattern (99 bp):
GAAAGAAAGATTCACTGTTGCGGCTTTAATCTTTTAAACTGCAAAATCAGAGAAACAAGATTGCC
GTCGTAGCTTTAATCTGCTCCACTACATTTCCAA
Found at i:63056525 original size:21 final size:22
Alignment explanation
Indices: 63056486--63056526 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
63056476 TTGCAGTGCG
*
63056486 TCTTCAAGCTCTCCTATCTTTT
1 TCTTCAAGCTCTCCAATCTTTT
*
63056508 TCTTCAA-CTCTTCAATCTT
1 TCTTCAAGCTCTCCAATCTT
63056527 ACTCAAACTT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 10 0.59
22 7 0.41
ACGTcount: A:0.17, C:0.32, G:0.02, T:0.49
Consensus pattern (22 bp):
TCTTCAAGCTCTCCAATCTTTT
Found at i:63059487 original size:108 final size:106
Alignment explanation
Indices: 63059300--63059493 Score: 307
Period size: 108 Copynumber: 1.8 Consensus size: 106
63059290 TGGATTGAGA
* * *
63059300 TTTAAGAGGATATTTGGCTATTTGGTCAAACAAGAAATCGAAACCCAACACATTAGGGCACGTTT
1 TTTAAAAGGATATTTGGCTATTTGATCAAACAAAAAATCGAAACCCAACACATTAGGGCACGTTT
*
63059365 CCTCGAATTTCCAAACGCAAAATATTGTCTTACTTTGAAAT
66 CCTCGAATCTCCAAACGCAAAATATTGTCTTACTTTGAAAT
* *
63059406 TTTAAAAGGATATTTGGCTATTTGATCGAACGAGAAAAATCGAAACCCAGCACATTAGGGCACGT
1 TTTAAAAGGATATTTGGCTATTTGATCAAAC-A-AAAAATCGAAACCCAACACATTAGGGCACGT
*
63059471 TTTCTCGAATCTCCAAACGCAAA
64 TTCCTCGAATCTCCAAACGCAAA
63059494 GCATTGCCTT
Statistics
Matches: 79, Mismatches: 7, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
106 28 0.35
107 1 0.01
108 50 0.63
ACGTcount: A:0.36, C:0.20, G:0.17, T:0.28
Consensus pattern (106 bp):
TTTAAAAGGATATTTGGCTATTTGATCAAACAAAAAATCGAAACCCAACACATTAGGGCACGTTT
CCTCGAATCTCCAAACGCAAAATATTGTCTTACTTTGAAAT
Found at i:63061815 original size:41 final size:41
Alignment explanation
Indices: 63061785--63062145 Score: 431
Period size: 41 Copynumber: 8.8 Consensus size: 41
63061775 GCACTTCCCC
* * *
63061785 AAAAACGCCGCTAAAGGTCTGCGCACTAGCGGCGCTTCTTA
1 AAAAACGCCGCTAAAGGTCTGCTCATTAGCGGCGCTTCTTG
* *
63061826 AAAAACGCCGCTAAAGGTCT-CTTCATTAACGGCGTTTCTTG
1 AAAAACGCCGCTAAAGGTCTGC-TCATTAGCGGCGCTTCTTG
* * *
63061867 AAAAATGCCGCTAAAGGTCTGCTCATTAGCGGCGCCTCATG
1 AAAAACGCCGCTAAAGGTCTGCTCATTAGCGGCGCTTCTTG
* * * *
63061908 AAAAAAGACGCTAAAGGTCTGCTCATTAGCGGCAC-TCAATG
1 AAAAACGCCGCTAAAGGTCTGCTCATTAGCGGCGCTTC-TTG
* * * *
63061949 AAAAACGCCGCTAAAGATCTACTCATTAGCGGCGTTTCTTA
1 AAAAACGCCGCTAAAGGTCTGCTCATTAGCGGCGCTTCTTG
* * * *
63061990 AAAAATGCCGCTAAAGGTCTGCTCATTAGCGACGCATCCT-
1 AAAAACGCCGCTAAAGGTCTGCTCATTAGCGGCGCTTCTTG
* * *
63062030 AAACAACGCCGCTAAAGGTCTGTTCATTAGCGGCGCATCCTG
1 AAA-AACGCCGCTAAAGGTCTGCTCATTAGCGGCGCTTCTTG
* **
63062072 AAAAACGCCGCTAAAGGTCTACTTGTTAGCGGCGCTTCTTG
1 AAAAACGCCGCTAAAGGTCTGCTCATTAGCGGCGCTTCTTG
*
63062113 AAAAACGCCGCTAAATGTCTGCTCATTAGCGGC
1 AAAAACGCCGCTAAAGGTCTGCTCATTAGCGGC
63062146 ACTTTTAAAG
Statistics
Matches: 273, Mismatches: 41, Indels: 12
0.84 0.13 0.04
Matches are distributed among these distances:
40 6 0.02
41 261 0.96
42 6 0.02
ACGTcount: A:0.29, C:0.26, G:0.22, T:0.23
Consensus pattern (41 bp):
AAAAACGCCGCTAAAGGTCTGCTCATTAGCGGCGCTTCTTG
Found at i:63063474 original size:43 final size:43
Alignment explanation
Indices: 63063396--63063478 Score: 105
Period size: 43 Copynumber: 1.9 Consensus size: 43
63063386 TTTTCGATAA
* **
63063396 GTGTTTTCGTGTAAGACCACGTCTAGGACGTTGGCATCGACTT
1 GTGTTTTCGTGTAAGACCACATCTAGGACAATGGCATCGACTT
* *
63063439 GTGTTTTCGTGTAAGACC-CTATTTGGGACAATGGCATCGA
1 GTGTTTTCGTGTAAGACCAC-ATCTAGGACAATGGCATCGA
63063479 TCTGGGATTA
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
42 1 0.03
43 33 0.97
ACGTcount: A:0.20, C:0.19, G:0.28, T:0.33
Consensus pattern (43 bp):
GTGTTTTCGTGTAAGACCACATCTAGGACAATGGCATCGACTT
Found at i:63063509 original size:43 final size:43
Alignment explanation
Indices: 63063405--63063509 Score: 97
Period size: 43 Copynumber: 2.4 Consensus size: 43
63063395 AGTGTTTTCG
* ** * * * *
63063405 TGTAAGACCACGTCTAGGACGTTGGCATCGACTTGTGTTTTCG
1 TGTAAGACCACGTCTGGGACAATGGCATCGACTTGGGATTACA
* *
63063448 TGTAAGACC-CTATTTGGGACAATGGCATCGA-TCTGGGATTACA
1 TGTAAGACCAC-GTCTGGGACAATGGCATCGACT-TGGGATTACA
63063491 TGTAAGACCACGTCTGGGA
1 TGTAAGACCACGTCTGGGA
63063510 TGTTGGCATT
Statistics
Matches: 48, Mismatches: 11, Indels: 6
0.74 0.17 0.09
Matches are distributed among these distances:
42 2 0.04
43 45 0.94
44 1 0.02
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.29
Consensus pattern (43 bp):
TGTAAGACCACGTCTGGGACAATGGCATCGACTTGGGATTACA
Found at i:63066486 original size:16 final size:17
Alignment explanation
Indices: 63066454--63066487 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
63066444 ATTATATAAT
63066454 TAATGATAATTAAATTA
1 TAATGATAATTAAATTA
*
63066471 TAATGAT-ATTAGATTA
1 TAATGATAATTAAATTA
63066487 T
1 T
63066488 TAAATAAATC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 9 0.56
17 7 0.44
ACGTcount: A:0.47, C:0.00, G:0.09, T:0.44
Consensus pattern (17 bp):
TAATGATAATTAAATTA
Found at i:63083329 original size:45 final size:45
Alignment explanation
Indices: 63083277--63083534 Score: 179
Period size: 45 Copynumber: 5.7 Consensus size: 45
63083267 AAGTTACAAA
* *
63083277 TCTTATCTCTCTGAAGTTGCAGTAGAGCAGACTAAAGAAAGCAAG
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAAGAAAGCAAG
* * *
63083322 TCTTATCTCCCTAAAGTTGCAGTGGAGCTGACTTAAGAAAGCAAG
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAAGAAAGCAAG
* * * * * *
63083367 TCTTATAC-CCCTGAAGTTGTAGTGGGGCAGACTGAGGATACCGAA-
1 TCTTAT-CTCCCTGAAGTTGCAGTGGAGCAGACTAAAGAAAGC-AAG
* ** * * *
63083412 TGTTA-CTTCCCTGAAGCCGCAGTGGAACAGATTAAAGCTATAAATCACAG
1 TCTTATC-TCCCTGAAGTTGCAGTGGAGCAGACTAAAG----AAAGCA-AG
* * * * * *
63083462 ATCTTATCTCTCTGAAGTTGCAGTAGAGCAGA-TCATG---GGAAA
1 -TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAAGAAAGCAAG
63083504 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGA
63083535 TTGAAGCCAC
Statistics
Matches: 164, Mismatches: 37, Indels: 28
0.72 0.16 0.12
Matches are distributed among these distances:
41 29 0.18
42 1 0.01
43 2 0.01
45 97 0.59
46 3 0.02
48 1 0.01
49 4 0.02
50 3 0.02
51 23 0.14
52 1 0.01
ACGTcount: A:0.31, C:0.20, G:0.24, T:0.26
Consensus pattern (45 bp):
TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAAGAAAGCAAG
Found at i:63083665 original size:181 final size:180
Alignment explanation
Indices: 63083458--63083941 Score: 591
Period size: 181 Copynumber: 2.7 Consensus size: 180
63083448 GCTATAAATC
* * *
63083458 ACAGATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATCATGGGAAATCTTATCTCCCTGAAGTTG
1 ACAGATCTTATCTCTCTAAAGTTGCAGTAGAACAGATCATGGCAAATCTTATCTCCCTGAAGTTG
* * * * **
63083523 CAGTGGAGCAGATTGAAGCCACTAATCCTATCTCCTTGAAGTTGCAAGTGGAGCGGATTAAAACG
66 CAGTGGAGCAGATTGAAACCACCAATCCTATCTCCCTAAAGTTGC-AGTGGAGCAAATTAAAACG
*
63083588 ATGAATCATATACCTCTGAAGTTGCAGTAGGTCAAATCAAATTCACCCAAG
130 ATGAATCATATACCTCTGAAGTTGCAGTAGGTCAAATCAAATTCACCAAAG
* *
63083639 ACAGATCTTATCTCTTTAAAGTTGCAGTAGAACAGATCATGGCAAATCTTATCTCCTTGAAGTTG
1 ACAGATCTTATCTCTCTAAAGTTGCAGTAGAACAGATCATGGCAAATCTTATCTCCCTGAAGTTG
* *
63083704 CAGTGGAGCAGATTGAAACCACCAATCCTATTTCCCTAAAGTTGCAGTGGAGTAAATTAAAACGA
66 CAGTGGAGCAGATTGAAACCACCAATCCTATCTCCCTAAAGTTGCAGTGGAGCAAATTAAAACGA
* * *
63083769 TGAATCCTATACCTCTGAAGTTGTAGTAGGTCAGATCAAATTCACCAAAG
131 TGAATCATATACCTCTGAAGTTGCAGTAGGTCAAATCAAATTCACCAAAG
* * * *
63083819 ACA-AGTCTTATCTCCCTAAA-TCTGCAGT-GAAGCAGACTGAAGATAGCAAATCTTA-CTTTCC
1 ACAGA-TCTTATCTCTCTAAAGT-TGCAGTAGAA-CAGA-T---CATGGCAAATCTTATC-TCCC
* * * * * * *
63083880 TGAAGTTGCAATAGAGCAGATTGAAGCCATC-AGCCTTATCTCTCTAAAGTTGCAGCGGAGCA
58 TGAAGTTGCAGTGGAGCAGATTGAAACCACCAATCC-TATCTCCCTAAAGTTGCAGTGGAGCA
63083942 GACTGAGGAC
Statistics
Matches: 262, Mismatches: 32, Indels: 15
0.85 0.10 0.05
Matches are distributed among these distances:
179 5 0.02
180 89 0.34
181 101 0.39
183 4 0.02
184 63 0.24
ACGTcount: A:0.32, C:0.21, G:0.20, T:0.27
Consensus pattern (180 bp):
ACAGATCTTATCTCTCTAAAGTTGCAGTAGAACAGATCATGGCAAATCTTATCTCCCTGAAGTTG
CAGTGGAGCAGATTGAAACCACCAATCCTATCTCCCTAAAGTTGCAGTGGAGCAAATTAAAACGA
TGAATCATATACCTCTGAAGTTGCAGTAGGTCAAATCAAATTCACCAAAG
Found at i:63083790 original size:44 final size:44
Alignment explanation
Indices: 63083696--63083791 Score: 104
Period size: 44 Copynumber: 2.2 Consensus size: 44
63083686 CTTATCTCCT
* * *
63083696 TGAAGTTGCAGTGGAGCAGATTGAAACCACCAATCCTATTTCCC
1 TGAAGTTGCAGTGGAGCAAATTAAAACCACCAATCCTATTACCC
* * * **
63083740 TAAAGTTGCAGTGGAGTAAATTAAAACGATGAATCCTA-TACCTC
1 TGAAGTTGCAGTGGAGCAAATTAAAACCACCAATCCTATTACC-C
63083784 TGAAGTTG
1 TGAAGTTG
63083792 TAGTAGGTCA
Statistics
Matches: 42, Mismatches: 9, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
43 3 0.07
44 39 0.93
ACGTcount: A:0.33, C:0.19, G:0.21, T:0.27
Consensus pattern (44 bp):
TGAAGTTGCAGTGGAGCAAATTAAAACCACCAATCCTATTACCC
Found at i:63083990 original size:89 final size:89
Alignment explanation
Indices: 63083825--63083995 Score: 211
Period size: 89 Copynumber: 1.9 Consensus size: 89
63083815 AAAGACAAGT
* * *
63083825 CTTATCTCCCTAAATCTGCAGTGAAGCAGACTGAAGATAGCAAATCTTACTTTCCTGAAGTTGCA
1 CTTATCTCCCTAAATCTGCAGCGAAGCAGACTGAAGACAGAAAATCTTACTTTCCTGAAGTTGCA
63083890 ATAGAGCAGATTGAAGCCATCAGC
66 ATAGAGCAGATTGAAGCCATCAGC
* * * *
63083914 CTTATCTCTCTAAAGT-TGCAGCGGAGCAGACTGAGGACAGAAAATCTTA-TTTCCCTGACGTTG
1 CTTATCTCCCTAAA-TCTGCAGCGAAGCAGACTGAAGACAGAAAATCTTACTTT-CCTGAAGTTG
* * * *
63083977 TAGTGGAGTAGATTGAAGC
64 CAATAGAGCAGATTGAAGC
63083996 GACAAATTCC
Statistics
Matches: 69, Mismatches: 11, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
88 3 0.04
89 65 0.94
90 1 0.01
ACGTcount: A:0.30, C:0.20, G:0.22, T:0.27
Consensus pattern (89 bp):
CTTATCTCCCTAAATCTGCAGCGAAGCAGACTGAAGACAGAAAATCTTACTTTCCTGAAGTTGCA
ATAGAGCAGATTGAAGCCATCAGC
Found at i:63085479 original size:605 final size:605
Alignment explanation
Indices: 63084291--63085501 Score: 1874
Period size: 605 Copynumber: 2.0 Consensus size: 605
63084281 GGCTCAACTT
* * * *
63084291 AGCCCAACACCCAGAAGCCCTAAAAATGTTTTTAGAAACCCTAGGGTTTCTGGAACCTTCAGCCA
1 AGCCCAACACCCAGAAGCCCGAAAAATGTTTTCAGAAAACCTAGGGTTTCTAGAACCTTCAGCCA
* * * * * * * ** * *
63084356 CCGCTCTTTCCCTCCGCACACCGTGCGTCTCTGCTCTCGCCACATCAATCGCCTCTGTACATCGC
66 CCACTCTTGCCCTCAGCACACCGCGCGCCTCTACTCTCGCCACATCAACCGCCTCCATACACCAC
* *
63084421 CAGCTGGCCTCCGTACCTACAAAAAGGACAAAAAAATAGCACAGAAAAAAACAAATATTGTATTT
131 CAACTGGCCTCCGTACCTACAAAAAGGACAAAAAAAGAGCACAGAAAAAAACAAATATTGTATTT
* * *
63084486 TTATTTATTTCAAATATTCGGCTATAAAACTAAATAGAAGACCTTTGTAAATTTTTTACACGGAC
196 TTATTTATTTCAAATATTCAGCTATAAAACTAAATAGAAGACCTTTGTAAATTTTATACACGGAA
* * *
63084551 GAATACGAAATCAAAAAAAATAGCAAAGAAATCTAAGCAAAAAAATATATTCGAAAGGTGATTTC
261 GAATACGAAATCAAAAAAAATACCAAAGAAATCTAAGCAAAAAAAGATATTCGAAAGGTGATTAC
* * * *
63084616 AGAGTTTTTTTTTCTTTTTTTTCTTCATTGGTTGTTCTTTTCTGTTTCTTTATTCATCAATCATG
326 AGAGTTTTTTTTTCTCTTTTTTCTTCATTAGTTGTTCTTTTCTGTTTCTTTATCCATCAATCATA
* *
63084681 TGCTAAAAAAGAAAAGGAAAAAGAAGAGTTAGAGGATAAAGAATTTACCTGGTGGCCGTCTTCGT
391 TGCTAAAAAAGAAAAGGAAAAAGAAAAGTTAGAGGATAAAGAATTTACCTAGTGGCCGTCTTCGT
* *
63084746 CTGCTCCATCGTAATCGGAGTCGAGCGAAGGTTGGGAGGCCATAGATTGGCCTGTTTGCTGAGCG
456 CTGCTCCACCATAATCGGAGTCGAGCGAAGGTTGGGAGGCCATAGATTGGCCTGTTTGCTGAGCG
* * *
63084811 GCGTATGGCTAGAGTTAGCCATTTATTTTCAAAAGTAGTCATTAGGTTTTTTTTATGTTTTTTAG
521 GCGCATGACTAGAGCTAGCCATTTATTTTCAAAAGTAGTCATTAGGTTTTTTTTATGTTTTTTAG
63084876 TTTATAAGTGCTAAGCAACG
586 TTTATAAGTGCTAAGCAACG
* * *
63084896 AGCCCAATACCCAGAAGCCCGAAAAATGTTTTCAGAAAACCTAGGGTTTTTAGAACCTTCAGCCG
1 AGCCCAACACCCAGAAGCCCGAAAAATGTTTTCAGAAAACCTAGGGTTTCTAGAACCTTCAGCCA
* * *
63084961 CCACTCTTGCCCTCAGCACACCGCGTGCCTCTACTCTCGCCACGTCCACCGCCTCCATACACCAC
66 CCACTCTTGCCCTCAGCACACCGCGCGCCTCTACTCTCGCCACATCAACCGCCTCCATACACCAC
* * * * *
63085026 CAACTTGCCTCCGTACCTACAAATAGGACGAAAAAAGAGTACAGAAAAAAACGAATATTGTATTT
131 CAACTGGCCTCCGTACCTACAAAAAGGACAAAAAAAGAGCACAGAAAAAAACAAATATTGTA-TT
63085091 TTTATTTATTTCAAATATTCAGCTATAAAACTAAATAGAAGACCTTTGTAAATTTTATACACGGA
195 TTTATTTATTTCAAATATTCAGCTATAAAACTAAATAGAAGACCTTTGTAAATTTTATACACGGA
*
63085156 AGAATACGAAATCAAAAAAAATACCAAAGGAATCTAAGCAAAAAAAAGATATTCGAAAGGTGA-T
260 AGAATACGAAATCAAAAAAAATACCAAAGAAATCTAAGC-AAAAAAAGATATTCGAAAGGTGATT
63085220 ACAGAGTTTTTTTTT-TCTTTTTTCTTC-TCTAGTTGTTCTTTTCTGTTTCTTTATCCATCAATC
324 ACAGAGTTTTTTTTTCTCTTTTTTCTTCAT-TAGTTGTTCTTTTCTGTTTCTTTATCCATCAATC
* *
63085283 ATATGCTAAAAAATAAAAGGAAAAAGAAAAGTTAGAGGATAAGGAATTTACCTAGTGGCCGAGTC
388 ATATGCTAAAAAAGAAAAGGAAAAAGAAAAGTTAGAGGATAAAGAATTTACCTAGTGGCC--GTC
*
63085348 TTCGTCTGCTCCACCATAATCGGTGTCGAGCGAAGGTTGGGAGGCCATAGATTGGCCTGTTTGCT
451 TTCGTCTGCTCCACCATAATCGGAGTCGAGCGAAGGTTGGGAGGCCATAGATTGGCCTGTTTGCT
* *
63085413 GAGCGGCGCATGACTAGGGCTAGCCATTTGTTTTCAAAAGTAGTCATTAGG-TTTTTTTAT-TTT
516 GAGCGGCGCATGACTAGAGCTAGCCATTTATTTTCAAAAGTAGTCATTAGGTTTTTTTTATGTTT
*
63085476 TTTAGTTTATAAGTGCTGAGCAACG
581 TTTAGTTTATAAGTGCTAAGCAACG
63085501 A
1 A
63085502 CACCGTTTGG
Statistics
Matches: 549, Mismatches: 52, Indels: 10
0.90 0.09 0.02
Matches are distributed among these distances:
604 1 0.00
605 290 0.53
606 125 0.23
607 133 0.24
ACGTcount: A:0.32, C:0.20, G:0.18, T:0.30
Consensus pattern (605 bp):
AGCCCAACACCCAGAAGCCCGAAAAATGTTTTCAGAAAACCTAGGGTTTCTAGAACCTTCAGCCA
CCACTCTTGCCCTCAGCACACCGCGCGCCTCTACTCTCGCCACATCAACCGCCTCCATACACCAC
CAACTGGCCTCCGTACCTACAAAAAGGACAAAAAAAGAGCACAGAAAAAAACAAATATTGTATTT
TTATTTATTTCAAATATTCAGCTATAAAACTAAATAGAAGACCTTTGTAAATTTTATACACGGAA
GAATACGAAATCAAAAAAAATACCAAAGAAATCTAAGCAAAAAAAGATATTCGAAAGGTGATTAC
AGAGTTTTTTTTTCTCTTTTTTCTTCATTAGTTGTTCTTTTCTGTTTCTTTATCCATCAATCATA
TGCTAAAAAAGAAAAGGAAAAAGAAAAGTTAGAGGATAAAGAATTTACCTAGTGGCCGTCTTCGT
CTGCTCCACCATAATCGGAGTCGAGCGAAGGTTGGGAGGCCATAGATTGGCCTGTTTGCTGAGCG
GCGCATGACTAGAGCTAGCCATTTATTTTCAAAAGTAGTCATTAGGTTTTTTTTATGTTTTTTAG
TTTATAAGTGCTAAGCAACG
Found at i:63086030 original size:22 final size:22
Alignment explanation
Indices: 63085992--63086070 Score: 81
Period size: 22 Copynumber: 3.5 Consensus size: 22
63085982 ATATATGTTG
63085992 TTTAAATTTATCACATATTATTAT
1 TTTAAATTTAT--CATATTATTAT
*
63086016 TTTAAATTTATCATATAATTAT
1 TTTAAATTTATCATATTATTAT
* *
63086038 TTTAAGTTT-TCAT-GTATTAT
1 TTTAAATTTATCATATTATTAT
63086058 TCTTCAAATTTAT
1 T-TT-AAATTTAT
63086071 TATGTATTGT
Statistics
Matches: 47, Mismatches: 5, Indels: 7
0.80 0.08 0.12
Matches are distributed among these distances:
20 6 0.13
21 6 0.13
22 23 0.49
23 1 0.02
24 11 0.23
ACGTcount: A:0.34, C:0.08, G:0.03, T:0.56
Consensus pattern (22 bp):
TTTAAATTTATCATATTATTAT
Found at i:63086111 original size:41 final size:41
Alignment explanation
Indices: 63086063--63086146 Score: 150
Period size: 41 Copynumber: 2.0 Consensus size: 41
63086053 ATTATTCTTC
**
63086063 AAATTTATTATGTATTGTTTTATATATTTTTATGTAAATTT
1 AAATTTATTACATATTGTTTTATATATTTTTATGTAAATTT
63086104 AAATTTATTACATATTGTTTTATATATTTTTATGTAAATTT
1 AAATTTATTACATATTGTTTTATATATTTTTATGTAAATTT
63086145 AA
1 AA
63086147 TATCATTTAT
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
41 41 1.00
ACGTcount: A:0.35, C:0.01, G:0.06, T:0.58
Consensus pattern (41 bp):
AAATTTATTACATATTGTTTTATATATTTTTATGTAAATTT
Found at i:63086370 original size:15 final size:16
Alignment explanation
Indices: 63086352--63086383 Score: 57
Period size: 15 Copynumber: 2.1 Consensus size: 16
63086342 TAGATTAACA
63086352 TATATATTA-TTATTT
1 TATATATTACTTATTT
63086367 TATATATTACTTATTT
1 TATATATTACTTATTT
63086383 T
1 T
63086384 GATTTTCTTC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 9 0.56
16 7 0.44
ACGTcount: A:0.31, C:0.03, G:0.00, T:0.66
Consensus pattern (16 bp):
TATATATTACTTATTT
Found at i:63088053 original size:43 final size:43
Alignment explanation
Indices: 63087992--63088078 Score: 174
Period size: 43 Copynumber: 2.0 Consensus size: 43
63087982 GGGGTGGGGG
63087992 TTGTTGAAAAGCCGGATTTGTTCGTACAAACTTCGTGAACCAC
1 TTGTTGAAAAGCCGGATTTGTTCGTACAAACTTCGTGAACCAC
63088035 TTGTTGAAAAGCCGGATTTGTTCGTACAAACTTCGTGAACCAC
1 TTGTTGAAAAGCCGGATTTGTTCGTACAAACTTCGTGAACCAC
63088078 T
1 T
63088079 CGTTCATCAT
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 44 1.00
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.31
Consensus pattern (43 bp):
TTGTTGAAAAGCCGGATTTGTTCGTACAAACTTCGTGAACCAC
Found at i:63090348 original size:42 final size:43
Alignment explanation
Indices: 63090240--63090358 Score: 125
Period size: 42 Copynumber: 2.8 Consensus size: 43
63090230 AGCTCGTACA
* *
63090240 ATGCCAACG-TCCTAGACATGGTCTTACATGTAATCAAACAATG
1 ATGCCAATGTTCC-AGACATGGTCTTACATGTAATCAAACAACG
* * * * * * * *
63090283 ATGCCACTATCCCAGATAGGGTCTTACACGTAATCATA-TACG
1 ATGCCAATGTTCCAGACATGGTCTTACATGTAATCAAACAACG
63090325 ATGCCAATGTTCCAGACATGGTCTTACATGTAAT
1 ATGCCAATGTTCCAGACATGGTCTTACATGTAAT
63090359 TCTCAAATTG
Statistics
Matches: 59, Mismatches: 16, Indels: 3
0.76 0.21 0.04
Matches are distributed among these distances:
42 30 0.51
43 27 0.46
44 2 0.03
ACGTcount: A:0.32, C:0.24, G:0.17, T:0.28
Consensus pattern (43 bp):
ATGCCAATGTTCCAGACATGGTCTTACATGTAATCAAACAACG
Found at i:63094640 original size:91 final size:90
Alignment explanation
Indices: 63094528--63094700 Score: 244
Period size: 91 Copynumber: 1.9 Consensus size: 90
63094518 AACAATAGGT
* * *
63094528 AAAATTCGTTTTGGGATTGATTCCCGCCGTTCAACAAATTTTATTCCATTAATTTGATTTTATTT
1 AAAATTCGTTTCGGGATTGATTCCCGCCATTCAAC-AATTTTATTCCA--AAATTG-TTTTATTT
*
63094593 CC-AAAACGAG-AAATTAAAAGTAAAATA
62 CCAAAAACGAGTAAAATAAAAGTAAAATA
*
63094620 AAAATT-GTTTCGGGATTGATTCCCGCCATTCAACTATTTTATTCCAAAATTGTTTTATTTCCAA
1 AAAATTCGTTTCGGGATTGATTCCCGCCATTCAACAATTTTATTCCAAAATTGTTTTATTTCCAA
63094684 AAACGAGTAAAATAAAA
66 AAACGAGTAAAATAAAA
63094701 TCGTTTCAGG
Statistics
Matches: 74, Mismatches: 5, Indels: 7
0.86 0.06 0.08
Matches are distributed among these distances:
87 10 0.14
88 13 0.18
89 8 0.11
90 11 0.15
91 26 0.35
92 6 0.08
ACGTcount: A:0.37, C:0.15, G:0.12, T:0.36
Consensus pattern (90 bp):
AAAATTCGTTTCGGGATTGATTCCCGCCATTCAACAATTTTATTCCAAAATTGTTTTATTTCCAA
AAACGAGTAAAATAAAAGTAAAATA
Found at i:63094825 original size:78 final size:78
Alignment explanation
Indices: 63094611--63094933 Score: 366
Period size: 77 Copynumber: 4.1 Consensus size: 78
63094601 AGAAATTAAA
* * * * *
63094611 AGTAAAATAAAAATTGTTTCGGGATTGATTCCCGCCATTCAACTATTTTATTCCAAAATTGTTTT
1 AGTAAAATAAAAATCGTTTCGAGATTGATTCCCGCCGTTCAACGATTTTATTCCAAATTTGTTTT
63094676 ATTTCCAAAAACG
66 ATTTCCAAAAACG
** *
63094689 AGTAAAAT-AAAATCGTTTC-AGGATCAATTCCCACCGTTCAACGATTTTATTCCAAATTTGTTT
1 AGTAAAATAAAAATCGTTTCGA-GATTGATTCCCGCCGTTCAACGATTTTATTCCAAATTTGTTT
63094752 TATTTCCAAAAACG
65 TATTTCCAAAAACG
* * * * *
63094766 AGTAATATAAAAATCATTTCGAGATTGTTTCTCGTCGTTCAACGATTTTATTCCAAATTTGTTTT
1 AGTAAAATAAAAATCGTTTCGAGATTGATTCCCGCCGTTCAACGATTTTATTCCAAATTTGTTTT
* *
63094831 ATTTTCAAAAAAATG
66 A-TTTC-CAAAAACG
* * ** * * * *
63094846 AGTTAAATAAATATCGTTTCG-GAATTGATTCCTACCGTTTAATGATTTCATTCCAAATTTGGTT
1 AGTAAAATAAAAATCGTTTCGAG-ATTGATTCCCGCCGTTCAACGATTTTATTCCAAATTTGTTT
63094910 TATTTCCAAAAACG
65 TATTTCCAAAAACG
*
63094924 AG-AAATTAAA
1 AGTAAAATAAA
63094934 TTAAATAAAA
Statistics
Matches: 204, Mismatches: 35, Indels: 13
0.81 0.14 0.05
Matches are distributed among these distances:
77 73 0.36
78 64 0.31
79 10 0.05
80 57 0.28
ACGTcount: A:0.35, C:0.15, G:0.11, T:0.38
Consensus pattern (78 bp):
AGTAAAATAAAAATCGTTTCGAGATTGATTCCCGCCGTTCAACGATTTTATTCCAAATTTGTTTT
ATTTCCAAAAACG
Found at i:63094925 original size:158 final size:155
Alignment explanation
Indices: 63094611--63094933 Score: 407
Period size: 158 Copynumber: 2.1 Consensus size: 155
63094601 AGAAATTAAA
* ** * *
63094611 AGTAAAATAAAAATTGTTTCGGGATTGATTCCCGCCATTCAACTATTTTATTCCAAAATTGTTTT
1 AGTAATATAAAAATCATTTCGAGATTGATTCCCGCCATTCAACGATTTTATTCCAAAATTGTTTT
* *
63094676 ATTTCCAAAAACGAGTAAAATAAAATCGTTTCAGGATCAATTCCCACCGTTCAACGATTTTATTC
66 ATTTCAAAAAACGAGTAAAATAAAATCGTTTCAGGATCAATTCCCACCGTTCAACGATTTCATTC
*
63094741 CAAATTTGTTTTATTTCCAAAAACG
131 CAAATTTGGTTTATTTCCAAAAACG
* * * * *
63094766 AGTAATATAAAAATCATTTCGAGATTGTTTCTCGTCGTTCAACGATTTTATTCCAAATTTGTTTT
1 AGTAATATAAAAATCATTTCGAGATTGATTCCCGCCATTCAACGATTTTATTCCAAAATTGTTTT
* * ** * * *
63094831 ATTTTCAAAAAAATGAGTTAAATAAATATCGTTTC-GGAATTGATTCCTACCGTTTAATGATTTC
66 A-TTTC-AAAAAACGAGTAAAATAAA-ATCGTTTCAGG-ATCAATTCCCACCGTTCAACGATTTC
63094895 ATTCCAAATTTGGTTTATTTCCAAAAACG
127 ATTCCAAATTTGGTTTATTTCCAAAAACG
*
63094924 AGAAAT-TAAA
1 AGTAATATAAA
63094934 TTAAATAAAA
Statistics
Matches: 143, Mismatches: 21, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
155 56 0.39
156 4 0.03
157 22 0.15
158 61 0.43
ACGTcount: A:0.35, C:0.15, G:0.11, T:0.38
Consensus pattern (155 bp):
AGTAATATAAAAATCATTTCGAGATTGATTCCCGCCATTCAACGATTTTATTCCAAAATTGTTTT
ATTTCAAAAAACGAGTAAAATAAAATCGTTTCAGGATCAATTCCCACCGTTCAACGATTTCATTC
CAAATTTGGTTTATTTCCAAAAACG
Found at i:63095078 original size:85 final size:84
Alignment explanation
Indices: 63094930--63095175 Score: 302
Period size: 85 Copynumber: 2.9 Consensus size: 84
63094920 AACGAGAAAT
* * * *
63094930 TAAATTAAATAAAATCTGTTTCGAGATTT-ATTCCGTTGTTTAACAGGATTTTATTTGATTTTAT
1 TAAATTAAATAAAATCTGTTTCGGGATTTAACTCCGTCGTTTAACAAGATTTTATTTGATTTTAT
63094994 TTTGTTTCCAAATT-AGAA-
66 TTTGTTTCCAAATTCA-AAC
* * *
63095012 TATAATTAAATAAAATCTGTTTTGGGATTTAACCTCCGCCGTTTAACAATATTTTATTTGATTTT
1 TA-AATTAAATAAAATCTGTTTCGGGATTTAA-CTCCGTCGTTTAACAAGATTTTATTTGATTTT
*
63095077 ATTTTGTTTCTAAATTCAAAC
64 ATTTTGTTTCCAAATTCAAAC
** * * *
63095098 TAAATTAAATAAAAAATGTTTCGGGATTT-ATTCCCGTCGTTTAACAAGATTTTATTTGATATTG
1 TAAATTAAATAAAATCTGTTTCGGGATTTAACT-CCGTCGTTTAACAAGATTTTATTTGATTTTA
*
63095162 TTTTGTTTTCAAAT
65 TTTTGTTTCCAAAT
63095176 AAAGACGTAA
Statistics
Matches: 140, Mismatches: 18, Indels: 10
0.83 0.11 0.06
Matches are distributed among these distances:
82 2 0.01
83 26 0.19
84 41 0.29
85 68 0.49
86 3 0.02
ACGTcount: A:0.32, C:0.10, G:0.11, T:0.47
Consensus pattern (84 bp):
TAAATTAAATAAAATCTGTTTCGGGATTTAACTCCGTCGTTTAACAAGATTTTATTTGATTTTAT
TTTGTTTCCAAATTCAAAC
Found at i:63105039 original size:20 final size:20
Alignment explanation
Indices: 63105014--63105064 Score: 102
Period size: 20 Copynumber: 2.5 Consensus size: 20
63105004 ACTTCAGCTG
63105014 AAGGAGAAGAAAGAAAAGGA
1 AAGGAGAAGAAAGAAAAGGA
63105034 AAGGAGAAGAAAGAAAAGGA
1 AAGGAGAAGAAAGAAAAGGA
63105054 AAGGAGAAGAA
1 AAGGAGAAGAA
63105065 GAAGGAGAAG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.65, C:0.00, G:0.35, T:0.00
Consensus pattern (20 bp):
AAGGAGAAGAAAGAAAAGGA
Found at i:63105148 original size:15 final size:16
Alignment explanation
Indices: 63105124--63105156 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
63105114 GGAGGGAAGG
63105124 AAAAAGAAAGAAAAAT
1 AAAAAGAAAGAAAAAT
*
63105140 AAAAA-AAAGAAAGAT
1 AAAAAGAAAGAAAAAT
63105155 AA
1 AA
63105157 TTTTTTTGTA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 11 0.69
16 5 0.31
ACGTcount: A:0.82, C:0.00, G:0.12, T:0.06
Consensus pattern (16 bp):
AAAAAGAAAGAAAAAT
Found at i:63105381 original size:34 final size:35
Alignment explanation
Indices: 63105317--63105395 Score: 90
Period size: 34 Copynumber: 2.3 Consensus size: 35
63105307 AAATAGCATT
* * *
63105317 AAAAATAAAAATACTAAAAAATTATGTTTA-TGAA
1 AAAAATAAAAAAACTAAAAAAGTATATTTATTGAA
63105351 AAAAATAAAAAAAC-AAAAATAGTATATTTATTGAA
1 AAAAATAAAAAAACTAAAAA-AGTATATTTATTGAA
**
63105386 AGTAATAAAA
1 AAAAATAAAA
63105396 TCCGGAAAAA
Statistics
Matches: 38, Mismatches: 5, Indels: 3
0.83 0.11 0.07
Matches are distributed among these distances:
33 5 0.13
34 21 0.55
35 12 0.32
ACGTcount: A:0.65, C:0.03, G:0.06, T:0.27
Consensus pattern (35 bp):
AAAAATAAAAAAACTAAAAAAGTATATTTATTGAA
Found at i:63105537 original size:159 final size:160
Alignment explanation
Indices: 63105352--63107185 Score: 2673
Period size: 159 Copynumber: 11.7 Consensus size: 160
63105342 GTTTATGAAA
* *
63105352 AAAATAA-AAAA-ACAAAAATAGTATATTTATTGAAAGTAATAAAATCCGGAAAAAAAGAAAAAT
1 AAAATAATAAAATACGAAAATAGTATATTTTTTGAAAGTAATAAAATCCGGAAAAAAAGAAAAAT
* *
63105415 ACGAACAAAGGGCCAAAATAAGAGTTTTTTACTAAATTTATATAAAAAAACACACT-AATTAATT
66 ACGAACAAAGGGCCAAAATAAGGGTTTTTTACTAAATTTATATAAAAAAACACACTAAATTAATA
63105479 CATTTCAAACATAATGTACTAAAATAATAT
131 CATTTCAAACATAATGTACTAAAATAATAT
* *
63105509 AAAATAATAAAATACGAAAATAGTATATTTTTTGAAAGTAATAAAATCTGGAAAAAAA-AAAGAT
1 AAAATAATAAAATACGAAAATAGTATATTTTTTGAAAGTAATAAAATCCGGAAAAAAAGAAAAAT
* * * * *
63105573 GCGAACAAATGGCCAAAATAAGAGTTTTTTACTAAA-TTATATAAAAAAACACACT-AATTGATT
66 ACGAACAAAGGGCCAAAATAAGGGTTTTTTACTAAATTTATATAAAAAAACACACTAAATTAATA
63105636 CATTTCAAACATAATGTACTAAAATAATAT
131 CATTTCAAACATAATGTACTAAAATAATAT
** *
63105666 AAAATAATAAAATACGAAAATAGTATATTTTTTGAAAGTAATAAAATTTGG--AAAAA-AAAGAT
1 AAAATAATAAAATACGAAAATAGTATATTTTTTGAAAGTAATAAAATCCGGAAAAAAAGAAAAAT
* * * *
63105728 GCGAACAAATGGCCAAAATAAGAGTTTTTTACTAAA-TTATAT--AAAAA-ATACTAAATTAATA
66 ACGAACAAAGGGCCAAAATAAGGGTTTTTTACTAAATTTATATAAAAAAACACACTAAATTAATA
*
63105789 CATTTCAAACATAATGTACTAAAATATTAT
131 CATTTCAAACATAATGTACTAAAATAATAT
*
63105819 AAAATAATAAAATACGAAAATAGTATATTTTTTGAAAGTAATAAAATCC-GAAAAAAAGAAAGAT
1 AAAATAATAAAATACGAAAATAGTATATTTTTTGAAAGTAATAAAATCCGGAAAAAAAGAAAAAT
*
63105883 ACGAAC-AAGTGGCCAAAATAAGAGTTTTTTACTAAATTTATAT-AAAAAACACACTAAATTAAT
66 ACGAACAAAG-GGCCAAAATAAGGGTTTTTTACTAAATTTATATAAAAAAACACACTAAATTAAT
63105946 ACATTTCAAACATAATGTACTAAAATAATAT
130 ACATTTCAAACATAATGTACTAAAATAATAT
*
63105977 AAAATAATAAAATACGAAAATAGTATATTTTTTGAAAGTAGTAAAATCC-----AAAA-AAAAAT
1 AAAATAATAAAATACGAAAATAGTATATTTTTTGAAAGTAATAAAATCCGGAAAAAAAGAAAAAT
* * *
63106036 ACGAACAAATGGCCAAAAGAAGGGTTTTTTACTAAATTTATATAAAAAAACACACTAAGTTAATA
66 ACGAACAAAGGGCCAAAATAAGGGTTTTTTACTAAATTTATATAAAAAAACACACTAAATTAATA
**
63106101 CATTTCAAACATTTTGTACTAAAATAATAT
131 CATTTCAAACATAATGTACTAAAATAATAT
**
63106131 AAAATAATAAAATACGAAAATAGTATATTTTTTGAAAGTAATAAAATCCAAAAAAAGAAAGAAAA
1 AAAATAATAAAATACGAAAATAGTATATTTTTTGAAAGTAATAAAATCC-GGAAAA-AAAGAAAA
* *
63106196 ATACGAACAAATGGCCAAAATAAGGGTTTTTTACTAAATTTATATAAAAAACCACACTAAATTAA
64 ATACGAACAAAGGGCCAAAATAAGGGTTTTTTACTAAATTTATATAAAAAAACACACTAAATTAA
* * * *
63106261 TACATTTTAACCCTTATGTACTAAAATAATAT
129 TACATTTCAAACATAATGTACTAAAATAATAT
* *
63106293 AAAATAATAAAATACAAAAATAG--TATTTTTTGAAAGTAATAAAATCCGAAAAAAAAAGAAAAA
1 AAAATAATAAAATACGAAAATAGTATATTTTTTGAAAGTAATAAAATCCG-GAAAAAAAGAAAAA
* *
63106356 TACGAACAAAGAGCCAAAATAAGGGTTTTTTACTAAATTTATAT-AAAAAACACACTAAATTACT
65 TACGAACAAAGGGCCAAAATAAGGGTTTTTTACTAAATTTATATAAAAAAACACACTAAATTAAT
*
63106420 ACATTTGAAACATAATGTACTAAAATAATAT
130 ACATTTCAAACATAATGTACTAAAATAATAT
* * *
63106451 AAAATAATAAAATACGAAAAATAGTATATTATTTGAAAGTAATAAAATTCGGGAAAAAAGAAAAA
1 AAAATAATAAAATACG-AAAATAGTATATTTTTTGAAAGTAATAAAATCCGGAAAAAAAGAAAAA
* *
63106516 TACGAACAAAGGGACAAAATAAGGGTTTTTTACTAAATTTATAT-AAAAAATACACTAAATTAAT
65 TACGAACAAAGGGCCAAAATAAGGGTTTTTTACTAAATTTATATAAAAAAACACACTAAATTAAT
* *
63106580 ATATTTGAAACATAATGTACTAAAATAATAT
130 ACATTTCAAACATAATGTACTAAAATAATAT
* ***
63106611 AAAATAATAAAATACGAAAATAATATATTTTTTGAAAGTAATAAAATTCAACAAAAAAAGAAAAA
1 AAAATAATAAAATACGAAAATAGTATATTTTTTGAAAGTAATAAAA-TCCGGAAAAAAAGAAAAA
*
63106676 TACGAACAAATGGCCAAAATAA-GGTTTTTTACTAAATTTATATAAAAAAAACACACTAAATTAA
65 TACGAACAAAGGGCCAAAATAAGGGTTTTTTACTAAATTTATAT-AAAAAAACACACTAAATTAA
*
63106740 TACATTTCAAACATTATGTACTAAAATAATAT
129 TACATTTCAAACATAATGTACTAAAATAATAT
* *
63106772 AATAA-AATAAAATACGAAAATAGTATATTTTTTGAAGGTAATAAAATCC-GAAAATAAGAAAAA
1 AA-AATAATAAAATACGAAAATAGTATATTTTTTGAAAGTAATAAAATCCGGAAAAAAAGAAAAA
* * * *
63106835 TCCGAACAAAAGGCCAAAATAAGGGCTTCTTACTAAATTTATATAAAAAAACACACTAAATTAAT
65 TACGAACAAAGGGCCAAAATAAGGGTTTTTTACTAAATTTATATAAAAAAACACACTAAATTAAT
* *
63106900 ACATTTCAAACATTATATACTAAAATAATAT
130 ACATTTCAAACATAATGTACTAAAATAATAT
** * *
63106931 AAAATAATAAAATACGAAAATAACATATTTTTTGTAAGTAATAAAATCC-GAAAATAAGAAAAAT
1 AAAATAATAAAATACGAAAATAGTATATTTTTTGAAAGTAATAAAATCCGGAAAAAAAGAAAAAT
* * *
63106995 TCAAACAAAGGGCCAAAATAAGGGTTTTTTACTAAATTTATATAAAAAAATACACTAAATTAATA
66 ACGAACAAAGGGCCAAAATAAGGGTTTTTTACTAAATTTATATAAAAAAACACACTAAATTAATA
* *
63107060 CATTTCAAACTTTATGTACTAAAATAATAT
131 CATTTCAAACATAATGTACTAAAATAATAT
* *
63107090 AAAATAATAAAATACAAAAATAGTAT-TTTTTTGAAAGTAATAAAATTCGG-----AA-AAAAA-
1 AAAATAATAAAATACGAAAATAGTATATTTTTTGAAAGTAATAAAATCCGGAAAAAAAGAAAAAT
*
63107147 ACGAACAAAAGGCCAAAATAAGGGTTTTTTACTAAATTT
66 ACGAACAAAGGGCCAAAATAAGGGTTTTTTACTAAATTT
63107186 GTTTTGAAGT
Statistics
Matches: 1549, Mismatches: 97, Indels: 67
0.90 0.06 0.04
Matches are distributed among these distances:
152 41 0.03
153 134 0.09
154 111 0.07
155 90 0.06
156 6 0.00
157 118 0.08
158 215 0.14
159 400 0.26
160 202 0.13
161 114 0.07
162 118 0.08
ACGTcount: A:0.54, C:0.09, G:0.09, T:0.28
Consensus pattern (160 bp):
AAAATAATAAAATACGAAAATAGTATATTTTTTGAAAGTAATAAAATCCGGAAAAAAAGAAAAAT
ACGAACAAAGGGCCAAAATAAGGGTTTTTTACTAAATTTATATAAAAAAACACACTAAATTAATA
CATTTCAAACATAATGTACTAAAATAATAT
Found at i:63106669 original size:320 final size:316
Alignment explanation
Indices: 63105352--63107185 Score: 2609
Period size: 320 Copynumber: 5.8 Consensus size: 316
63105342 GTTTATGAAA
* * *
63105352 AAAATAA-AAAA-ACAAAAATAGTATATTTATTGAAAGTAATAAAATC-CGGAAAAAAAGAAAAA
1 AAAATAATAAAATACGAAAATAATATATTTTTTGAAAGTAATAAAATCAC--AAAAAAAGAAAAA
* *
63105414 TACGAACAAAGGGCCAAAATAAGAGTTTTTTACTAAATTTATATAAAAAAACACACT-AATTAAT
64 TACGAACAAATGGCCAAAATAAGGGTTTTTTACTAAATTTATATAAAAAAACACACTAAATTAAT
*
63105478 TCATTTCAAACATAATGTACTAAAATAATATAAAATAATAAAATACGAAAATAGTATATTTTTTG
129 ACATTTCAAACATAATGTACTAAAATAATATAAAATAATAAAATACGAAAATAGTATATTTTTTG
* * *
63105543 AAAGTAATAAAATCTGGAAAAAA-AAAAGATGCGAACAAATGGCCAAAATAAGAGTTTTTTACTA
194 AAAGTAATAAAATC-GGAAAAAAGAAAA-ATACGAACAAAAGGCCAAAATAAGGGTTTTTTACTA
* *
63105607 AA-TTATATAAAAAAACACACT-AATTGATTCATTTCAAACATAATGTACTAAAATAATAT
257 AATTTATAT-AAAAAACACACTAAATTAATACATTTCAAACATAATGTACTAAAATAATAT
* **** * *
63105666 AAAATAATAAAATACGAAAATAGTATATTTTTTGAAAGTAATAAAAT-TTGGAAAAA-AAAGATG
1 AAAATAATAAAATACGAAAATAATATATTTTTTGAAAGTAATAAAATCACAAAAAAAGAAAAATA
* *
63105729 CGAACAAATGGCCAAAATAAGAGTTTTTTACTAAA-TTATAT--AAAAA-ATACTAAATTAATAC
66 CGAACAAATGGCCAAAATAAGGGTTTTTTACTAAATTTATATAAAAAAACACACTAAATTAATAC
*
63105790 ATTTCAAACATAATGTACTAAAATATTATAAAATAATAAAATACGAAAATAGTATATTTTTTGAA
131 ATTTCAAACATAATGTACTAAAATAATATAAAATAATAAAATACGAAAATAGTATATTTTTTGAA
* * ** *
63105855 AGTAATAAAATCCGAAAAAAAGAAAGATACGAACAAGTGGCCAAAATAAGAGTTTTTTACTAAAT
196 AGTAATAAAAT-CGGAAAAAAGAAAAATACGAACAAAAGGCCAAAATAAGGGTTTTTTACTAAAT
63105920 TTATATAAAAAACACACTAAATTAATACATTTCAAACATAATGTACTAAAATAATAT
260 TTATATAAAAAACACACTAAATTAATACATTTCAAACATAATGTACTAAAATAATAT
* *
63105977 AAAATAATAAAATACGAAAATAGTATATTTTTTGAAAGTAGTAAAATC-C---AAAA-AAAAATA
1 AAAATAATAAAATACGAAAATAATATATTTTTTGAAAGTAATAAAATCACAAAAAAAGAAAAATA
* *
63106037 CGAACAAATGGCCAAAAGAAGGGTTTTTTACTAAATTTATATAAAAAAACACACTAAGTTAATAC
66 CGAACAAATGGCCAAAATAAGGGTTTTTTACTAAATTTATATAAAAAAACACACTAAATTAATAC
**
63106102 ATTTCAAACATTTTGTACTAAAATAATATAAAATAATAAAATACGAAAATAGTATATTTTTTGAA
131 ATTTCAAACATAATGTACTAAAATAATATAAAATAATAAAATACGAAAATAGTATATTTTTTGAA
** *
63106167 AGTAATAAAATCCAAAAAAAGAAAGAAAAATACGAACAAATGGCCAAAATAAGGGTTTTTTACTA
196 AGTAATAAAAT-C--GGAAA-AAAGAAAAATACGAACAAAAGGCCAAAATAAGGGTTTTTTACTA
* * * *
63106232 AATTTATATAAAAAACCACACTAAATTAATACATTTTAACCCTTATGTACTAAAATAATAT
257 AATTTATATAAAAAA-CACACTAAATTAATACATTTCAAACATAATGTACTAAAATAATAT
*
63106293 AAAATAATAAAATAC--AAA-AATAGTATTTTTTGAAAGTAATAAAATCCGAAAAAAAAAGAAAA
1 AAAATAATAAAATACGAAAATAATA-TATTTTTTGAAAGTAATAAAAT-C-ACAAAAAAAGAAAA
63106355 ATACGAACAAA-GAGCCAAAATAAGGGTTTTTTACTAAATTTATAT-AAAAAACACACTAAATTA
63 ATACGAACAAATG-GCCAAAATAAGGGTTTTTTACTAAATTTATATAAAAAAACACACTAAATTA
* * *
63106418 CTACATTTGAAACATAATGTACTAAAATAATATAAAATAATAAAATACGAAAAATAGTATATTAT
127 ATACATTTCAAACATAATGTACTAAAATAATATAAAATAATAAAATACG-AAAATAGTATATTTT
* *
63106483 TTGAAAGTAATAAAATTCGGGAAAAAAGAAAAATACGAACAAAGGGACAAAATAAGGGTTTTTTA
191 TTGAAAGTAATAAAA-TC-GGAAAAAAGAAAAATACGAACAAAAGGCCAAAATAAGGGTTTTTTA
* * *
63106548 CTAAATTTATATAAAAAATACACTAAATTAATATATTTGAAACATAATGTACTAAAATAATAT
254 CTAAATTTATATAAAAAACACACTAAATTAATACATTTCAAACATAATGTACTAAAATAATAT
63106611 AAAATAATAAAATACGAAAATAATATATTTTTTGAAAGTAATAAAATTCAACAAAAAAAGAAAAA
1 AAAATAATAAAATACGAAAATAATATATTTTTTGAAAGTAATAAAA-TC-ACAAAAAAAGAAAAA
63106676 TACGAACAAATGGCCAAAATAA-GGTTTTTTACTAAATTTATATAAAAAAAACACACTAAATTAA
64 TACGAACAAATGGCCAAAATAAGGGTTTTTTACTAAATTTATAT-AAAAAAACACACTAAATTAA
*
63106740 TACATTTCAAACATTATGTACTAAAATAATATAATAA-AATAAAATACGAAAATAGTATATTTTT
128 TACATTTCAAACATAATGTACTAAAATAATATAA-AATAATAAAATACGAAAATAGTATATTTTT
* * * * *
63106804 TGAAGGTAATAAAATCCGAAAATAAGAAAAATCCGAACAAAAGGCCAAAATAAGGGCTTCTTACT
192 TGAAAGTAATAAAATCGGAAAA-AAGAAAAATACGAACAAAAGGCCAAAATAAGGGTTTTTTACT
* *
63106869 AAATTTATATAAAAAAACACACTAAATTAATACATTTCAAACATTATATACTAAAATAATAT
256 AAATTTATAT-AAAAAACACACTAAATTAATACATTTCAAACATAATGTACTAAAATAATAT
* * *
63106931 AAAATAATAAAATACGAAAATAACATATTTTTTGTAAGTAATAAAATC-CGAAAATAAGAAAAAT
1 AAAATAATAAAATACGAAAATAATATATTTTTTGAAAGTAATAAAATCAC-AAAAAAAGAAAAAT
* * * *
63106995 TCAAACAAAGGGCCAAAATAAGGGTTTTTTACTAAATTTATATAAAAAAATACACTAAATTAATA
65 ACGAACAAATGGCCAAAATAAGGGTTTTTTACTAAATTTATATAAAAAAACACACTAAATTAATA
* * *
63107060 CATTTCAAACTTTATGTACTAAAATAATATAAAATAATAAAATACAAAAATAGTAT-TTTTTTGA
130 CATTTCAAACATAATGTACTAAAATAATATAAAATAATAAAATACGAAAATAGTATATTTTTTGA
63107124 AAGTAATAAAATTCGG----AA-AAAAA-ACGAACAAAAGGCCAAAATAAGGGTTTTTTACTAAA
195 AAGTAATAAAA-TCGGAAAAAAGAAAAATACGAACAAAAGGCCAAAATAAGGGTTTTTTACTAAA
63107183 TTT
259 TTT
63107186 GTTTTGAAGT
Statistics
Matches: 1389, Mismatches: 89, Indels: 87
0.89 0.06 0.06
Matches are distributed among these distances:
308 42 0.03
309 10 0.01
310 143 0.10
311 133 0.10
312 99 0.07
313 44 0.03
314 40 0.03
315 61 0.04
316 88 0.06
317 21 0.02
318 165 0.12
319 150 0.11
320 247 0.18
321 143 0.10
322 3 0.00
ACGTcount: A:0.54, C:0.09, G:0.09, T:0.28
Consensus pattern (316 bp):
AAAATAATAAAATACGAAAATAATATATTTTTTGAAAGTAATAAAATCACAAAAAAAGAAAAATA
CGAACAAATGGCCAAAATAAGGGTTTTTTACTAAATTTATATAAAAAAACACACTAAATTAATAC
ATTTCAAACATAATGTACTAAAATAATATAAAATAATAAAATACGAAAATAGTATATTTTTTGAA
AGTAATAAAATCGGAAAAAAGAAAAATACGAACAAAAGGCCAAAATAAGGGTTTTTTACTAAATT
TATATAAAAAACACACTAAATTAATACATTTCAAACATAATGTACTAAAATAATAT
Found at i:63109401 original size:8 final size:8
Alignment explanation
Indices: 63109388--63109435 Score: 80
Period size: 8 Copynumber: 6.1 Consensus size: 8
63109378 TACTTTTTTG
63109388 CATTACAA
1 CATTACAA
63109396 CATTACAA
1 CATTACAA
63109404 CATTACAA
1 CATTACAA
63109412 CATTACAA
1 CATTACAA
63109420 CATTAC-A
1 CATTACAA
*
63109427 CATAACAA
1 CATTACAA
63109435 C
1 C
63109436 TATAAGTTAA
Statistics
Matches: 38, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
7 6 0.16
8 32 0.84
ACGTcount: A:0.50, C:0.27, G:0.00, T:0.23
Consensus pattern (8 bp):
CATTACAA
Found at i:63109470 original size:8 final size:8
Alignment explanation
Indices: 63109457--63109498 Score: 50
Period size: 8 Copynumber: 5.4 Consensus size: 8
63109447 GGGTGTTACA
63109457 ACAACATT
1 ACAACATT
63109465 ACAACATT
1 ACAACATT
*
63109473 ACAATATT
1 ACAACATT
*
63109481 AC-ACATA
1 ACAACATT
*
63109488 ACAACTTT
1 ACAACATT
63109496 ACA
1 ACA
63109499 GCATAAGCTC
Statistics
Matches: 28, Mismatches: 5, Indels: 2
0.80 0.14 0.06
Matches are distributed among these distances:
7 5 0.18
8 23 0.82
ACGTcount: A:0.50, C:0.24, G:0.00, T:0.26
Consensus pattern (8 bp):
ACAACATT
Found at i:63110007 original size:183 final size:183
Alignment explanation
Indices: 63109699--63110063 Score: 649
Period size: 183 Copynumber: 2.0 Consensus size: 183
63109689 CGTAGCCCTC
**
63109699 TGTCTGGGACAAGCTCGAAAGTTGTCGAAGGCACCTCCCACGTAGACAGGTCAGGTAGGACAGGA
1 TGTCTGGGACAAGCTCGAAAGTCATCGAAGGCACCTCCCACGTAGACAGGTCAGGTAGGACAGGA
* *
63109764 AACTCATTTTCCCAGACACGCAATGTGCGCTCGAGCGTGTACACATCATTGACAAATTGTTCAAC
66 AACTCATTTTCCCAGACACGCAATGTGCGCTCGAGCATGTACACATCATTGAAAAATTGTTCAAC
*
63109829 ATTAAGGTTCACTTTAGCACACGCTGTCACGACATGCGCACATGGATAATGAT
131 ATTAAGGTTCACTTTAGCACACACTGTCACGACATGCGCACATGGATAATGAT
* *
63109882 TGTCTGGGACAAGCTCGAAAGTCATCGGAGGCACCTCCCACGTAGACAGGTCAGGTAGGACAGGG
1 TGTCTGGGACAAGCTCGAAAGTCATCGAAGGCACCTCCCACGTAGACAGGTCAGGTAGGACAGGA
*
63109947 AACTCATTTTTCCAGACACGCAATGTGCGCTCGAGCATGTACACATCATTGAAAAATTGTTCAAC
66 AACTCATTTTCCCAGACACGCAATGTGCGCTCGAGCATGTACACATCATTGAAAAATTGTTCAAC
*
63110012 ATTAAGGTTCACTTTAGCACACACTGTCACGACATGCGCACGTGGATAATGA
131 ATTAAGGTTCACTTTAGCACACACTGTCACGACATGCGCACATGGATAATGA
63110064 AGTGTTTCGA
Statistics
Matches: 173, Mismatches: 9, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
183 173 1.00
ACGTcount: A:0.29, C:0.24, G:0.24, T:0.23
Consensus pattern (183 bp):
TGTCTGGGACAAGCTCGAAAGTCATCGAAGGCACCTCCCACGTAGACAGGTCAGGTAGGACAGGA
AACTCATTTTCCCAGACACGCAATGTGCGCTCGAGCATGTACACATCATTGAAAAATTGTTCAAC
ATTAAGGTTCACTTTAGCACACACTGTCACGACATGCGCACATGGATAATGAT
Found at i:63111529 original size:29 final size:29
Alignment explanation
Indices: 63111487--63111549 Score: 108
Period size: 29 Copynumber: 2.2 Consensus size: 29
63111477 CTACCTTCCA
* *
63111487 ACACTTCCCAATATATATTGTCGGTTTAG
1 ACACTCCCCAATATATACTGTCGGTTTAG
63111516 ACACTCCCCAATATATACTGTCGGTTTAG
1 ACACTCCCCAATATATACTGTCGGTTTAG
63111545 ACACT
1 ACACT
63111550 GCGACTTTAT
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
29 32 1.00
ACGTcount: A:0.29, C:0.25, G:0.13, T:0.33
Consensus pattern (29 bp):
ACACTCCCCAATATATACTGTCGGTTTAG
Found at i:63113146 original size:3 final size:3
Alignment explanation
Indices: 63113138--63113166 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
63113128 TTTTTAATCC
63113138 TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
63113167 NNNNNNNNNN
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:63115530 original size:3 final size:3
Alignment explanation
Indices: 63115522--63115588 Score: 134
Period size: 3 Copynumber: 22.3 Consensus size: 3
63115512 TAACTAACAC
63115522 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
63115570 AAT AAT AAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT A
63115589 GTTTTCTTAC
Statistics
Matches: 64, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 64 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:63115647 original size:76 final size:77
Alignment explanation
Indices: 63115567--63115787 Score: 198
Period size: 76 Copynumber: 2.8 Consensus size: 77
63115557 TAATAATAAT
63115567 AATAATAATAATAATAATAATAGTTTTCTTACTAAAAATAATACTAACTAACAATAATAATTAGG
1 AATAATAATAATAATAATAATAGTTTT-TTACTAAAAATAATACTAACTAACAATAATAATTAGG
63115632 G-TTTTACTAA-A
65 GTTTTTACTAACA
* * **** * **
63115643 AATAATAACTAACAATGAT-ATAGTGTAAAAACTAACAATCGTACTAACTAA-AATAATAATTAG
1 AATAATAA-TAATAATAATAATAGT-TTTTTACTAAAAATAATACTAACTAACAATAATAATTAG
*
63115706 GGTTTTTACTAATCCT
64 GGTTTTTACTAA--CA
* * * * *
63115722 AATAACTAACCATAATAATAATATTACTTTTTTACTAATAATAATACTAAGTAACAATAATTATT
1 AATAA-T-A--ATAATAATAATAATAGTTTTTTACTAAAAATAATACTAACTAACAATAATAATT
63115787 A
62 A
63115788 ATAACTAAAC
Statistics
Matches: 110, Mismatches: 23, Indels: 17
0.73 0.15 0.11
Matches are distributed among these distances:
75 14 0.13
76 40 0.36
77 9 0.08
79 5 0.05
80 1 0.01
81 1 0.01
82 26 0.24
83 14 0.13
ACGTcount: A:0.49, C:0.10, G:0.05, T:0.35
Consensus pattern (77 bp):
AATAATAATAATAATAATAATAGTTTTTTACTAAAAATAATACTAACTAACAATAATAATTAGGG
TTTTTACTAACA
Found at i:63115652 original size:37 final size:37
Alignment explanation
Indices: 63115567--63115658 Score: 107
Period size: 40 Copynumber: 2.4 Consensus size: 37
63115557 TAATAATAAT
* **
63115567 AATAATAA-TAATAATAATAATAGTTTTCTTACTAAA
1 AATAATAACTAACAATAATAATAGGGTTCTTACTAAA
63115603 AATAATACTAACTAACAATAATAATTAGGGTT-TTACTAAA
1 AAT-A-A-TAACTAACAATAATAA-TAGGGTTCTTACTAAA
63115643 AATAATAACTAACAAT
1 AATAATAACTAACAAT
63115659 GATATAGTGT
Statistics
Matches: 48, Mismatches: 3, Indels: 9
0.80 0.05 0.15
Matches are distributed among these distances:
36 3 0.06
37 12 0.25
38 2 0.04
39 4 0.08
40 22 0.46
41 5 0.10
ACGTcount: A:0.53, C:0.09, G:0.04, T:0.34
Consensus pattern (37 bp):
AATAATAACTAACAATAATAATAGGGTTCTTACTAAA
Found at i:63116009 original size:14 final size:13
Alignment explanation
Indices: 63115984--63116014 Score: 53
Period size: 14 Copynumber: 2.3 Consensus size: 13
63115974 TTTCTGTCTC
63115984 CTTTCTCTATTCT
1 CTTTCTCTATTCT
63115997 CTTTCTCTCATTCT
1 CTTTCTCT-ATTCT
63116011 CTTT
1 CTTT
63116015 TCTTTTTCCA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 8 0.47
14 9 0.53
ACGTcount: A:0.06, C:0.32, G:0.00, T:0.61
Consensus pattern (13 bp):
CTTTCTCTATTCT
Done.