Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr09 ID=Chr09-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 70713020
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 1142373 characters in sequence are not A, C, G, or T
File 212 of 226
Found at i:66624288 original size:49 final size:49
Alignment explanation
Indices: 66624212--66624385 Score: 197
Period size: 49 Copynumber: 3.6 Consensus size: 49
66624202 GTTCAACAGC
* * ** * *
66624212 TTATTTGCAACGA-CAGTGGTTTATCCACAATGTATTTTAGTTAGCAGT
1 TTATCTGCAACGACCAGTGGTTCATCCACAACATATTTTAGTCAGTAGT
* * * *
66624260 TTGTCTGCAATGACTAGTGGTTCATCCACAACATATTTTAGTCAGTAAT
1 TTATCTGCAACGACCAGTGGTTCATCCACAACATATTTTAGTCAGTAGT
* * * * *
66624309 TTATCTGAAATGACCAGTGGTTCATTCACAACATATTTCAGTCAATAGT
1 TTATCTGCAACGACCAGTGGTTCATCCACAACATATTTTAGTCAGTAGT
*
66624358 TTATCTGCAACAACCAGTGGTTCATCCA
1 TTATCTGCAACGACCAGTGGTTCATCCA
66624386 TAACGTACTA
Statistics
Matches: 104, Mismatches: 21, Indels: 1
0.83 0.17 0.01
Matches are distributed among these distances:
48 10 0.10
49 94 0.90
ACGTcount: A:0.29, C:0.19, G:0.16, T:0.36
Consensus pattern (49 bp):
TTATCTGCAACGACCAGTGGTTCATCCACAACATATTTTAGTCAGTAGT
Found at i:66625648 original size:39 final size:39
Alignment explanation
Indices: 66625586--66625701 Score: 108
Period size: 45 Copynumber: 2.8 Consensus size: 39
66625576 TTACTGATCA
* * * *
66625586 GGCAC-TTATGTGCCGACTACTGTTACTGTTACCGATTC
1 GGCACTTTGTGTGTCGAATACTGTTACTGTTACAGATTC
66625624 GGCACTTTGTGTGTCGAATACTGTTACCGTTACTGTTACAGATTC
1 GGCACTTTGTGTGTCGAATAC---T---GTTACTGTTACAGATTC
* * *
66625669 AGCACTTTGTGTGTTGAATACTGTCACTGTTAC
1 GGCACTTTGTGTGTCGAATACTGTTACTGTTAC
66625702 TGTTACTGTT
Statistics
Matches: 64, Mismatches: 7, Indels: 13
0.76 0.08 0.15
Matches are distributed among these distances:
38 5 0.08
39 22 0.34
42 2 0.03
45 35 0.55
ACGTcount: A:0.20, C:0.22, G:0.22, T:0.37
Consensus pattern (39 bp):
GGCACTTTGTGTGTCGAATACTGTTACTGTTACAGATTC
Found at i:66625674 original size:45 final size:45
Alignment explanation
Indices: 66625607--66625707 Score: 157
Period size: 45 Copynumber: 2.2 Consensus size: 45
66625597 GCCGACTACT
* * *
66625607 GTTACTGTTACCGATTCGGCACTTTGTGTGTCGAATACTGTTACC
1 GTTACTGTTACAGATTCAGCACTTTGTGTGTCGAATACTGTCACC
* *
66625652 GTTACTGTTACAGATTCAGCACTTTGTGTGTTGAATACTGTCACT
1 GTTACTGTTACAGATTCAGCACTTTGTGTGTCGAATACTGTCACC
66625697 GTTACTGTTAC
1 GTTACTGTTAC
66625708 TGTTACCGTT
Statistics
Matches: 51, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
45 51 1.00
ACGTcount: A:0.20, C:0.20, G:0.21, T:0.40
Consensus pattern (45 bp):
GTTACTGTTACAGATTCAGCACTTTGTGTGTCGAATACTGTCACC
Found at i:66625728 original size:7 final size:6
Alignment explanation
Indices: 66625687--66625735 Score: 62
Period size: 6 Copynumber: 7.8 Consensus size: 6
66625677 GTGTGTTGAA
* *
66625687 TACTGT CACTGT TACTGT TACTGT TACCGT TACTGAT TACTGTT TACTG
1 TACTGT TACTGT TACTGT TACTGT TACTGT TACTG-T TACTG-T TACTG
66625736 GTGTGTTTGG
Statistics
Matches: 37, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
6 25 0.68
7 12 0.32
ACGTcount: A:0.18, C:0.20, G:0.16, T:0.45
Consensus pattern (6 bp):
TACTGT
Found at i:66627229 original size:2 final size:2
Alignment explanation
Indices: 66627222--66627258 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
66627212 CCATTTCATG
66627222 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
66627259 TAAAGTTGTA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:66627373 original size:9 final size:9
Alignment explanation
Indices: 66627349--66627381 Score: 50
Period size: 9 Copynumber: 3.7 Consensus size: 9
66627339 TACTTGGGTG
66627349 AAAAATA-A
1 AAAAATATA
66627357 AAATAATATA
1 AAA-AATATA
66627367 AAAAATATA
1 AAAAATATA
66627376 AAAAAT
1 AAAAAT
66627382 TTGGTTAATT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
8 3 0.13
9 16 0.70
10 4 0.17
ACGTcount: A:0.79, C:0.00, G:0.00, T:0.21
Consensus pattern (9 bp):
AAAAATATA
Found at i:66629998 original size:14 final size:16
Alignment explanation
Indices: 66629966--66629998 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
66629956 AATGAAATAC
66629966 ATACTTGTGCTTATAT
1 ATACTTGTGCTTATAT
66629982 ATACTTGTGCTTATAT
1 ATACTTGTGCTTATAT
66629998 A
1 A
66629999 GTTTACTATC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.27, C:0.12, G:0.12, T:0.48
Consensus pattern (16 bp):
ATACTTGTGCTTATAT
Found at i:66639594 original size:109 final size:110
Alignment explanation
Indices: 66639380--66639613 Score: 364
Period size: 112 Copynumber: 2.1 Consensus size: 110
66639370 NNNNNNNNNN
* * * *
66639380 CAAAAATTTTTTTTTTAATTTTTTTCGTATATTTATATTTGACTCTGACACGAAAAAAAAAGAAT
1 CAAAATTTTTTTTTTTAATTTTTTTCATATATTTATATCTGACTCTGACACGAAAAAAAAAGAAA
*
66639445 TTTTTTTTTAAATTGTACTGGGTGCCGGCCATTGACAGGCCAGCACC
66 TTTTTTTTT-AACTGTA-TGGGTGCCGGCCATTGACAGGCCAGCACC
*
66639492 CAAATTTTTTTTTTTTAATTTTTTTCATATATTTATATCTGACTCTGACACGAAAAAAAAAGTAA
1 CAAAATTTTTTTTTTTAATTTTTTTCATATATTTATATCTGACTCTGACACGAAAAAAAAAG-AA
*
66639557 ATTTTTTTTT-ACTGT-TGGGTGCCGGCCATTGACAGGCCTGCACC
65 ATTTTTTTTTAACTGTATGGGTGCCGGCCATTGACAGGCCAGCACC
66639601 CAAAATTTTTTTT
1 CAAAATTTTTTTT
66639614 CTTTCTTTTT
Statistics
Matches: 113, Mismatches: 8, Indels: 5
0.90 0.06 0.04
Matches are distributed among these distances:
109 40 0.35
111 4 0.04
112 58 0.51
113 11 0.10
ACGTcount: A:0.29, C:0.15, G:0.13, T:0.42
Consensus pattern (110 bp):
CAAAATTTTTTTTTTTAATTTTTTTCATATATTTATATCTGACTCTGACACGAAAAAAAAAGAAA
TTTTTTTTTAACTGTATGGGTGCCGGCCATTGACAGGCCAGCACC
Found at i:66648831 original size:19 final size:19
Alignment explanation
Indices: 66648807--66648843 Score: 74
Period size: 19 Copynumber: 1.9 Consensus size: 19
66648797 GCCGAAACTT
66648807 AAAAAACCATGTATGTTTA
1 AAAAAACCATGTATGTTTA
66648826 AAAAAACCATGTATGTTT
1 AAAAAACCATGTATGTTT
66648844 CTTTCCTTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.46, C:0.11, G:0.11, T:0.32
Consensus pattern (19 bp):
AAAAAACCATGTATGTTTA
Found at i:66648952 original size:16 final size:17
Alignment explanation
Indices: 66648919--66648952 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
66648909 TATAAAGTTA
*
66648919 ATATTTACCTTATTACT
1 ATATTAACCTTATTACT
66648936 ATATTAACCTT-TTACT
1 ATATTAACCTTATTACT
66648952 A
1 A
66648953 ATAATTTTGT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 6 0.38
17 10 0.62
ACGTcount: A:0.32, C:0.18, G:0.00, T:0.50
Consensus pattern (17 bp):
ATATTAACCTTATTACT
Found at i:66653600 original size:86 final size:86
Alignment explanation
Indices: 66653455--66653622 Score: 291
Period size: 86 Copynumber: 2.0 Consensus size: 86
66653445 GGATGGACGG
* *
66653455 TGCGTTTACCTATGGTTAATATAAAAATAACGATGGTGGTGAAATTAGATACTATAGCATATGAC
1 TGCGTTTACCTATGGTTAATATAAAAACAACGATAGTGGTGAAATTAGATACTATAGCATATGAC
*
66653520 AAAAAGAAAGATAAACAACGA
66 AAAAAGAAAAATAAACAACGA
* *
66653541 TGCGTTTACCTATGGTTAGTGTAAAAACAACGATAGTGGTGAAATTAGATACTATAGCATATGAC
1 TGCGTTTACCTATGGTTAATATAAAAACAACGATAGTGGTGAAATTAGATACTATAGCATATGAC
66653606 AAAAAGAAAAATAAACA
66 AAAAAGAAAAATAAACA
66653623 CATCGCATTG
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
86 77 1.00
ACGTcount: A:0.45, C:0.11, G:0.18, T:0.26
Consensus pattern (86 bp):
TGCGTTTACCTATGGTTAATATAAAAACAACGATAGTGGTGAAATTAGATACTATAGCATATGAC
AAAAAGAAAAATAAACAACGA
Found at i:66654142 original size:10 final size:9
Alignment explanation
Indices: 66654098--66654247 Score: 92
Period size: 9 Copynumber: 15.9 Consensus size: 9
66654088 ACCTAATTCT
66654098 ATTTTTATA
1 ATTTTTATA
66654107 ATTTTTTTATA
1 A--TTTTTATA
66654118 ATTTATT-TGA
1 ATTT-TTAT-A
66654128 ATTTTTATA
1 ATTTTTATA
66654137 AGTTTTTATA
1 A-TTTTTATA
* *
66654147 ATATTTAGA
1 ATTTTTATA
*
66654156 TATTTTTAGA
1 -ATTTTTATA
66654166 ATTTTTAATGA
1 ATTTTT-AT-A
66654177 A-TTTTATA
1 ATTTTTATA
*
66654185 ATTTTTTTA
1 ATTTTTATA
*
66654194 AGTTTATATA
1 A-TTTTTATA
*
66654204 AGATTTTA-A
1 A-TTTTTATA
*
66654213 TATTTTCATA
1 -ATTTTTATA
*
66654223 A-TTTCATA
1 ATTTTTATA
*
66654231 ATTTTTATG
1 ATTTTTATA
66654240 ATTTTTAT
1 ATTTTTAT
66654248 TTGAAAAATG
Statistics
Matches: 114, Mismatches: 13, Indels: 28
0.74 0.08 0.18
Matches are distributed among these distances:
8 10 0.09
9 49 0.43
10 44 0.39
11 11 0.10
ACGTcount: A:0.33, C:0.01, G:0.05, T:0.61
Consensus pattern (9 bp):
ATTTTTATA
Found at i:66654143 original size:29 final size:29
Alignment explanation
Indices: 66654098--66654204 Score: 89
Period size: 29 Copynumber: 3.7 Consensus size: 29
66654088 ACCTAATTCT
*
66654098 ATTTTTATAATTTTTTTATAATTTATTTGA
1 ATTTTTATAA-GTTTTTATAATTTATTTGA
66654128 ATTTTTATAAGTTTTTATAA--TATTTAGA
1 ATTTTTATAAGTTTTTATAATTTATTT-GA
* *
66654156 TATTTTTAGAA-TTTTTAATGAATTT-TAT-A
1 -ATTTTTATAAGTTTTT-AT-AATTTATTTGA
* *
66654185 ATTTTTTTAAGTTTATATAA
1 ATTTTTATAAGTTTTTATAA
66654205 GATTTTAATA
Statistics
Matches: 64, Mismatches: 6, Indels: 17
0.74 0.07 0.20
Matches are distributed among these distances:
27 7 0.11
28 17 0.27
29 25 0.39
30 12 0.19
31 2 0.03
32 1 0.02
ACGTcount: A:0.34, C:0.00, G:0.06, T:0.61
Consensus pattern (29 bp):
ATTTTTATAAGTTTTTATAATTTATTTGA
Found at i:66654153 original size:19 final size:17
Alignment explanation
Indices: 66654100--66654247 Score: 66
Period size: 19 Copynumber: 7.9 Consensus size: 17
66654090 CTAATTCTAT
66654100 TTTTATAATTTTTTTATAA
1 TTTTATAA--TTTTTATAA
*
66654119 TTTATTTGAATTTTTATAA
1 TTT-TAT-AATTTTTATAA
* *
66654138 GTTTTTATAATATTTAGATAT
1 --TTTTATAAT-TTT-TATAA
*
66654159 TTTTAGAATTTTTAATGAA
1 TTTTATAATTTTT-AT-AA
*
66654178 TTTTATAATTTTTTTAA
1 TTTTATAATTTTTATAA
*
66654195 GTTTATATAAGATTTTA-ATA
1 -TTT-TATAA-TTTTTATA-A
*
66654215 TTTTCATAA-TTTCATAA
1 TTTT-ATAATTTTTATAA
*
66654232 TTTTTATGATTTTTAT
1 -TTTTATAATTTTTAT
66654248 TTGAAAAATG
Statistics
Matches: 99, Mismatches: 14, Indels: 33
0.68 0.10 0.23
Matches are distributed among these distances:
17 10 0.10
18 20 0.20
19 49 0.49
20 12 0.12
21 8 0.08
ACGTcount: A:0.32, C:0.01, G:0.05, T:0.61
Consensus pattern (17 bp):
TTTTATAATTTTTATAA
Found at i:66655466 original size:15 final size:14
Alignment explanation
Indices: 66655438--66655464 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
66655428 TGACATGTGT
66655438 TTTTTTAATATTTA
1 TTTTTTAATATTTA
66655452 TTTTTTAATATTT
1 TTTTTTAATATTT
66655465 TACTATACCC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (14 bp):
TTTTTTAATATTTA
Found at i:66657673 original size:22 final size:21
Alignment explanation
Indices: 66657647--66657709 Score: 58
Period size: 22 Copynumber: 2.9 Consensus size: 21
66657637 AACTTTACAT
66657647 CTAAAAAAATTATAAAAAGAAA
1 CTAAAAAAATTATAAAAA-AAA
**
66657669 CT-AAAGGATATATAAAAAAAA
1 CTAAAAAAAT-TATAAAAAAAA
66657690 CTTAAAAAATATT-TAAAAAA
1 C-TAAAAAA-ATTATAAAAAA
66657710 CCCCCTAAAC
Statistics
Matches: 33, Mismatches: 4, Indels: 8
0.73 0.09 0.18
Matches are distributed among these distances:
21 9 0.27
22 18 0.55
23 4 0.12
24 2 0.06
ACGTcount: A:0.68, C:0.05, G:0.05, T:0.22
Consensus pattern (21 bp):
CTAAAAAAATTATAAAAAAAA
Found at i:66660834 original size:2 final size:2
Alignment explanation
Indices: 66660827--66660857 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
66660817 AAAATGTAAA
66660827 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
66660858 ATTTTTAACT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:66663359 original size:19 final size:20
Alignment explanation
Indices: 66663318--66663356 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 20
66663308 AATTTGTAAA
66663318 AAAATTATTAAAAAAATATT
1 AAAATTATTAAAAAAATATT
66663338 AAAA-TATTAAATAAAATAT
1 AAAATTATTAAA-AAAATAT
66663357 AAATAACTAC
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 7 0.39
20 11 0.61
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (20 bp):
AAAATTATTAAAAAAATATT
Found at i:66671938 original size:29 final size:29
Alignment explanation
Indices: 66671893--66672180 Score: 276
Period size: 29 Copynumber: 9.9 Consensus size: 29
66671883 AGTGTGCTAA
* * *
66671893 CGATGGTCGTAATCATCCCTTTTCGTATT
1 CGATGGTCGTCACCATCCCTTTTCATATT
*
66671922 CGATGGTCGTCACCATCCCTTTTCATTAAT
1 CGATGGTCGTCACCATCCCTTTTCA-TATT
*
66671952 CGATAGTCGTCACCATCCCTTTTCATAGTT
1 CGATGGTCGTCACCATCCCTTTTCATA-TT
* *
66671982 -GATGGTCGCCTCCATCCCTTTTCATAGTT
1 CGATGGTCGTCACCATCCCTTTTCATA-TT
*
66672011 -GATGGTCGTCACCATCCCTTTTCATAGT
1 CGATGGTCGTCACCATCCCTTTTCATATT
* * ** * *
66672039 CGATAGTTGAAACTATCCCTTTTCATATA
1 CGATGGTCGTCACCATCCCTTTTCATATT
* *
66672068 CTACGGTCGTCACCATCCCTTTTCATAGTT
1 CGATGGTCGTCACCATCCCTTTTCATA-TT
* *
66672098 -GATGGTTGTCACCATCCCTTTTCATAGT
1 CGATGGTCGTCACCATCCCTTTTCATATT
* *** * *
66672126 CGATAGTCAAAACTATCCCTTTTCATAAT
1 CGATGGTCGTCACCATCCCTTTTCATATT
***
66672155 CGATGGTCAAAACCATCCCTTTTCAT
1 CGATGGTCGTCACCATCCCTTTTCAT
66672181 TGATCGATAA
Statistics
Matches: 214, Mismatches: 40, Indels: 10
0.81 0.15 0.04
Matches are distributed among these distances:
28 2 0.01
29 183 0.86
30 29 0.14
ACGTcount: A:0.22, C:0.28, G:0.14, T:0.37
Consensus pattern (29 bp):
CGATGGTCGTCACCATCCCTTTTCATATT
Found at i:66672089 original size:87 final size:87
Alignment explanation
Indices: 66671897--66672180 Score: 340
Period size: 87 Copynumber: 3.3 Consensus size: 87
66671887 TGCTAACGAT
* * * *
66671897 GGTCGTAATCATCCCTTTTCGTA-TTCGATGGTCGTCACCATCCCTTTTCATTAATCGATAGTCG
1 GGTCGTCACCATCCCTTTTCATAGTT-GATGGTCGTCACCATCCCTTTTCA-TAGTCGATAGTCG
** * *
66671961 TCACCATCCCTTTTCATAGTTGAT
64 AAACTATCCCTTTTCATAGTTGAC
* * *
66671985 GGTCGCCTCCATCCCTTTTCATAGTTGATGGTCGTCACCATCCCTTTTCATAGTCGATAGTTGAA
1 GGTCGTCACCATCCCTTTTCATAGTTGATGGTCGTCACCATCCCTTTTCATAGTCGATAGTCGAA
66672050 ACTATCCCTTTTCATA-TACT-AC
66 ACTATCCCTTTTCATAGT--TGAC
* *
66672072 GGTCGTCACCATCCCTTTTCATAGTTGATGGTTGTCACCATCCCTTTTCATAGTCGATAGTCAAA
1 GGTCGTCACCATCCCTTTTCATAGTTGATGGTCGTCACCATCCCTTTTCATAGTCGATAGTCGAA
* * *
66672137 ACTATCCCTTTTCATAATCGAT
66 ACTATCCCTTTTCATAGTTGAC
***
66672159 GGTCAAAACCATCCCTTTTCAT
1 GGTCGTCACCATCCCTTTTCAT
66672181 TGATCGATAA
Statistics
Matches: 170, Mismatches: 21, Indels: 11
0.84 0.10 0.05
Matches are distributed among these distances:
86 1 0.01
87 123 0.72
88 44 0.26
89 2 0.01
ACGTcount: A:0.21, C:0.28, G:0.14, T:0.37
Consensus pattern (87 bp):
GGTCGTCACCATCCCTTTTCATAGTTGATGGTCGTCACCATCCCTTTTCATAGTCGATAGTCGAA
ACTATCCCTTTTCATAGTTGAC
Found at i:66675256 original size:41 final size:41
Alignment explanation
Indices: 66675222--66675393 Score: 281
Period size: 41 Copynumber: 4.2 Consensus size: 41
66675212 CTTTCCGACG
*
66675222 TTTTCATTTGTTATCCTTTTCAGATAACATCCTTTTCAACC
1 TTTTCATTTGATATCCTTTTCAGATAACATCCTTTTCAACC
* * *
66675263 TTTCCATTTGTTATCCTTTTCGGATAACATCCTTTTCAACC
1 TTTTCATTTGATATCCTTTTCAGATAACATCCTTTTCAACC
66675304 TTTTCATTTGATATCCTTTTCAGATAACATCCTTTTCAACC
1 TTTTCATTTGATATCCTTTTCAGATAACATCCTTTTCAACC
* **
66675345 TTTTCATTTGATATACTTTTTGGATAACATCCTTTTCAACC
1 TTTTCATTTGATATCCTTTTCAGATAACATCCTTTTCAACC
66675386 TTTTCATT
1 TTTTCATT
66675394 GATTCAGAAA
Statistics
Matches: 123, Mismatches: 8, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
41 123 1.00
ACGTcount: A:0.22, C:0.23, G:0.06, T:0.49
Consensus pattern (41 bp):
TTTTCATTTGATATCCTTTTCAGATAACATCCTTTTCAACC
Found at i:66683576 original size:27 final size:27
Alignment explanation
Indices: 66683546--66683603 Score: 89
Period size: 27 Copynumber: 2.1 Consensus size: 27
66683536 AAAAAATAGC
*
66683546 CCTTTGTGGCCAACTCTAAAAGGAATT
1 CCTTTGTGGCAAACTCTAAAAGGAATT
* *
66683573 CCTTTGTGGGAAACTCTAAATGGAATT
1 CCTTTGTGGCAAACTCTAAAAGGAATT
66683600 CCTT
1 CCTT
66683604 GATGGCACGT
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.33
Consensus pattern (27 bp):
CCTTTGTGGCAAACTCTAAAAGGAATT
Found at i:66686562 original size:28 final size:27
Alignment explanation
Indices: 66686521--66686591 Score: 72
Period size: 28 Copynumber: 2.6 Consensus size: 27
66686511 AACATCTAGG
*
66686521 AAAAGAATAGCTTT-CGAGGAAAACTCCA
1 AAAAGAATACCTTTAC-A-GAAAACTCCA
* **
66686549 AAAAGAATTCCTTTACAGAAAACTCTG
1 AAAAGAATACCTTTACAGAAAACTCCA
66686576 AAAAGAATAACCTTTA
1 AAAAGAAT-ACCTTTA
66686592 TATCAAACTT
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
27 16 0.44
28 19 0.53
29 1 0.03
ACGTcount: A:0.48, C:0.17, G:0.13, T:0.23
Consensus pattern (27 bp):
AAAAGAATACCTTTACAGAAAACTCCA
Found at i:66686670 original size:28 final size:28
Alignment explanation
Indices: 66686639--66686698 Score: 79
Period size: 27 Copynumber: 2.2 Consensus size: 28
66686629 GAAAAAAATA
*
66686639 GCCTTTTGTGGCTAACTCTAAAA-GGAAT
1 GCCTTTTGTGGCAAACTC-AAAATGGAAT
*
66686667 GCC-TTTGTGGGAAACTCAAAATGGAAT
1 GCCTTTTGTGGCAAACTCAAAATGGAAT
66686694 GCCTT
1 GCCTT
66686699 GATGGCACGT
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
26 4 0.14
27 20 0.71
28 4 0.14
ACGTcount: A:0.28, C:0.18, G:0.23, T:0.30
Consensus pattern (28 bp):
GCCTTTTGTGGCAAACTCAAAATGGAAT
Found at i:66688008 original size:18 final size:18
Alignment explanation
Indices: 66687982--66688016 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
66687972 TTATAAATAA
*
66687982 TATTTAAATAAAAAGAAT
1 TATTAAAATAAAAAGAAT
66688000 TATTAAAATAAAAAGAA
1 TATTAAAATAAAAAGAA
66688017 ACCTCCTAAC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.66, C:0.00, G:0.06, T:0.29
Consensus pattern (18 bp):
TATTAAAATAAAAAGAAT
Found at i:66699202 original size:30 final size:30
Alignment explanation
Indices: 66699157--66699231 Score: 82
Period size: 30 Copynumber: 2.5 Consensus size: 30
66699147 TTTTTTGCAA
* *
66699157 TTATTTTTATCTATATATATTTATGTATATTT
1 TTATTTTTA--TATATATACTTATATATATTT
*
66699189 GTT-TTTTTATATATATACTTATATTTATTT
1 -TTATTTTTATATATATACTTATATATATTT
66699219 TTATTTTTA-ATAT
1 TTATTTTTATATAT
66699232 TGTAATTATT
Statistics
Matches: 38, Mismatches: 3, Indels: 6
0.81 0.06 0.13
Matches are distributed among these distances:
29 6 0.16
30 24 0.63
32 6 0.16
33 2 0.05
ACGTcount: A:0.28, C:0.03, G:0.03, T:0.67
Consensus pattern (30 bp):
TTATTTTTATATATATACTTATATATATTT
Found at i:66699316 original size:16 final size:16
Alignment explanation
Indices: 66699295--66699349 Score: 55
Period size: 16 Copynumber: 3.6 Consensus size: 16
66699285 TATTTCCCTA
66699295 TATATATGTATATTTT
1 TATATATGTATATTTT
*
66699311 TATATAATGTA-ATTAT
1 TATAT-ATGTATATTTT
*
66699327 TATTTA-GT-T-TTTT
1 TATATATGTATATTTT
66699340 TATATATGTA
1 TATATATGTA
66699350 CATGTGTATA
Statistics
Matches: 31, Mismatches: 4, Indels: 9
0.70 0.09 0.20
Matches are distributed among these distances:
13 8 0.26
14 4 0.13
15 1 0.03
16 13 0.42
17 5 0.16
ACGTcount: A:0.33, C:0.00, G:0.07, T:0.60
Consensus pattern (16 bp):
TATATATGTATATTTT
Found at i:66699519 original size:2 final size:2
Alignment explanation
Indices: 66699512--66699539 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
66699502 ACGTATTGTT
66699512 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
66699540 AGTTCTATAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:66702466 original size:27 final size:27
Alignment explanation
Indices: 66702337--66702493 Score: 102
Period size: 27 Copynumber: 5.8 Consensus size: 27
66702327 CTGTCGAGGA
* * *** *
66702337 AAACTCCAAAAGGAATTCCTTTACAGA
1 AAACTCTAAAAGGAATGCCTTTGTGGC
* * * *
66702364 AAACTCTAAAAAGAATAACCTTTATGTC
1 AAACTCTAAAAGGAAT-GCCTTTGTGGC
* * * *
66702392 AAACT-TGAAAGAAATGTCTTTGTGGA
1 AAACTCTAAAAGGAATGCCTTTGTGGC
* *
66702418 AAACTCTGAAAA-AATATCCCTTTGTGGC
1 AAACTCT-AAAAGGA-ATGCCTTTGTGGC
* *
66702446 CAACTCTAAAAGGAATGCCTTTGTGGG
1 AAACTCTAAAAGGAATGCCTTTGTGGC
*
66702473 AAACTCTAAATGGAATGCCTT
1 AAACTCTAAAAGGAATGCCTT
66702494 GATGGCACGT
Statistics
Matches: 100, Mismatches: 25, Indels: 10
0.74 0.19 0.07
Matches are distributed among these distances:
26 11 0.11
27 58 0.58
28 31 0.31
ACGTcount: A:0.39, C:0.18, G:0.16, T:0.27
Consensus pattern (27 bp):
AAACTCTAAAAGGAATGCCTTTGTGGC
Found at i:66706907 original size:25 final size:25
Alignment explanation
Indices: 66706874--66706923 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
66706864 TAAAAGTTAG
66706874 TATATAATTAGCTCCACCTCTCGAA
1 TATATAATTAGCTCCACCTCTCGAA
66706899 TATATAATTAGCTCCACCTCTCGAA
1 TATATAATTAGCTCCACCTCTCGAA
66706924 GGTACTCTAG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.32, C:0.28, G:0.08, T:0.32
Consensus pattern (25 bp):
TATATAATTAGCTCCACCTCTCGAA
Found at i:66710441 original size:27 final size:27
Alignment explanation
Indices: 66710411--66710468 Score: 89
Period size: 27 Copynumber: 2.1 Consensus size: 27
66710401 AAAAAATAGC
*
66710411 CCTTTGTGGCCAACTCTAAAAGGAATT
1 CCTTTGTGGCAAACTCTAAAAGGAATT
* *
66710438 CCTTTGTGGGAAACTCTAAATGGAATT
1 CCTTTGTGGCAAACTCTAAAAGGAATT
66710465 CCTT
1 CCTT
66710469 GATGGCACGT
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.33
Consensus pattern (27 bp):
CCTTTGTGGCAAACTCTAAAAGGAATT
Found at i:66713354 original size:28 final size:27
Alignment explanation
Indices: 66713313--66713383 Score: 72
Period size: 28 Copynumber: 2.6 Consensus size: 27
66713303 AACATCTAGG
*
66713313 AAAAGAATAGCTTT-CGAGGAAAACTCCA
1 AAAAGAATACCTTTAC-A-GAAAACTCCA
* **
66713341 AAAAGAATTCCTTTACAGAAAACTCTG
1 AAAAGAATACCTTTACAGAAAACTCCA
66713368 AAAAGAATAACCTTTA
1 AAAAGAAT-ACCTTTA
66713384 TATCAAACTT
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
27 16 0.44
28 19 0.53
29 1 0.03
ACGTcount: A:0.48, C:0.17, G:0.13, T:0.23
Consensus pattern (27 bp):
AAAAGAATACCTTTACAGAAAACTCCA
Found at i:66713453 original size:27 final size:26
Alignment explanation
Indices: 66713360--66713490 Score: 75
Period size: 27 Copynumber: 4.8 Consensus size: 26
66713350 CCTTTACAGA
* * **
66713360 AAACTCTGAAAAGAATAACCTTTATATC
1 AAACTCT-AAAAGAAT-GCCTTTGTGGC
* * *
66713388 AAACT-TGAAAGAAATGTCTTTGTGGA
1 AAACTCTAAAAG-AATGCCTTTGTGGC
* *
66713414 AAAATCTGAAAAAAATAGCCTTTTGTGGC
1 AAACTCT-AAAAGAAT-GCC-TTTGTGGC
* *
66713443 TAACTCTAAAAGGAATGCCTTTGTGGG
1 AAACTCTAAAA-GAATGCCTTTGTGGC
*
66713470 AAACTCTAAATGGAATGCCTT
1 AAACTCTAAA-AGAATGCCTT
66713491 GATGGCACGT
Statistics
Matches: 78, Mismatches: 18, Indels: 15
0.70 0.16 0.14
Matches are distributed among these distances:
26 13 0.17
27 33 0.42
28 17 0.22
29 15 0.19
ACGTcount: A:0.39, C:0.15, G:0.18, T:0.29
Consensus pattern (26 bp):
AAACTCTAAAAGAATGCCTTTGTGGC
Found at i:66713453 original size:28 final size:27
Alignment explanation
Indices: 66713387--66713490 Score: 86
Period size: 27 Copynumber: 3.8 Consensus size: 27
66713377 ACCTTTATAT
* *
66713387 CAAACT-TGAAAGAAATGTCTTTGTGG
1 CAAACTCTAAAAGAAATGCCTTTGTGG
* *
66713413 AAAAATCTGAAAA-AAATAGCCTTTTGTGG
1 CAAACTCT-AAAAGAAAT-GCC-TTTGTGG
* *
66713442 CTAACTCTAAAAGGAATGCCTTTGTGG
1 CAAACTCTAAAAGAAATGCCTTTGTGG
* * *
66713469 GAAACTCTAAATGGAATGCCTT
1 CAAACTCTAAAAGAAATGCCTT
66713491 GATGGCACGT
Statistics
Matches: 62, Mismatches: 11, Indels: 9
0.76 0.13 0.11
Matches are distributed among these distances:
26 4 0.06
27 31 0.50
28 12 0.19
29 15 0.24
ACGTcount: A:0.37, C:0.14, G:0.20, T:0.29
Consensus pattern (27 bp):
CAAACTCTAAAAGAAATGCCTTTGTGG
Found at i:66714742 original size:18 final size:18
Alignment explanation
Indices: 66714716--66714750 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
66714706 TTATAAATAA
*
66714716 TATTTAAATAAAAAGAAT
1 TATTAAAATAAAAAGAAT
66714734 TATTAAAATAAAAAGAA
1 TATTAAAATAAAAAGAA
66714751 ACCTCCTAAC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.66, C:0.00, G:0.06, T:0.29
Consensus pattern (18 bp):
TATTAAAATAAAAAGAAT
Found at i:66716097 original size:6 final size:6
Alignment explanation
Indices: 66716065--66716096 Score: 55
Period size: 6 Copynumber: 5.3 Consensus size: 6
66716055 TAATAAAAAA
*
66716065 ATGTCT ATGTCT ATGTCT ATGTCT ATATCT AT
1 ATGTCT ATGTCT ATGTCT ATGTCT ATGTCT AT
66716097 AAGTCTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 25 1.00
ACGTcount: A:0.22, C:0.16, G:0.12, T:0.50
Consensus pattern (6 bp):
ATGTCT
Found at i:66717096 original size:54 final size:54
Alignment explanation
Indices: 66717050--66717171 Score: 145
Period size: 54 Copynumber: 2.3 Consensus size: 54
66717040 GTGTTCTCAT
* *
66717050 CCGTGTAAGTCACTAAGTTGCCCCGCACACTCGTGTGCCAGGCCGTGTGCTAGG
1 CCGTGTAAGTCACTAAGTTGCCACACACACTCGTGTGCCAGGCCGTGTGCTAGG
* * ** * * *
66717104 CTGTGTAATTCTTTGAGTTGCCACACACACTCGTGTGTCAGGCCGTGTGCTAAG
1 CCGTGTAAGTCACTAAGTTGCCACACACACTCGTGTGCCAGGCCGTGTGCTAGG
* *
66717158 CTGTGTAACTCACT
1 CCGTGTAAGTCACT
66717172 GACTTGGAAC
Statistics
Matches: 56, Mismatches: 12, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
54 56 1.00
ACGTcount: A:0.18, C:0.28, G:0.26, T:0.28
Consensus pattern (54 bp):
CCGTGTAAGTCACTAAGTTGCCACACACACTCGTGTGCCAGGCCGTGTGCTAGG
Found at i:66720700 original size:12 final size:12
Alignment explanation
Indices: 66720683--66720707 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
66720673 TTTGTGGGGA
66720683 TTATTTTATTTT
1 TTATTTTATTTT
66720695 TTATTTTATTTT
1 TTATTTTATTTT
66720707 T
1 T
66720708 GAGAACTAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.00, G:0.00, T:0.84
Consensus pattern (12 bp):
TTATTTTATTTT
Found at i:66731593 original size:26 final size:26
Alignment explanation
Indices: 66731564--66731620 Score: 62
Period size: 26 Copynumber: 2.2 Consensus size: 26
66731554 TTTTTGCAAT
* *
66731564 TATTT-TTATCTATATATATTTATGTA
1 TATTTGTT-TCTATATATATATACGTA
* *
66731590 TATTTGTTTTTTTATATATATACGTA
1 TATTTGTTTCTATATATATATACGTA
66731616 TATTT
1 TATTT
66731621 ATTTTTATTT
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
26 24 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.04, G:0.05, T:0.63
Consensus pattern (26 bp):
TATTTGTTTCTATATATATATACGTA
Found at i:66731625 original size:26 final size:26
Alignment explanation
Indices: 66731576--66731626 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
66731566 TTTTTATCTA
* * *
66731576 TATATATTTATGTATATTTGTTTTTT
1 TATATATATACGTATATTTATTTTTT
66731602 TATATATATACGTATATTTATTTTT
1 TATATATATACGTATATTTATTTTT
66731627 ATTTTTAATA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.27, C:0.02, G:0.06, T:0.65
Consensus pattern (26 bp):
TATATATATACGTATATTTATTTTTT
Found at i:66731722 original size:16 final size:16
Alignment explanation
Indices: 66731701--66731755 Score: 55
Period size: 16 Copynumber: 3.6 Consensus size: 16
66731691 TATTTCCCTA
66731701 TATATATGTATATTTT
1 TATATATGTATATTTT
*
66731717 TATATAATGTA-ATTAT
1 TATAT-ATGTATATTTT
*
66731733 TATTTA-GT-T-TTTT
1 TATATATGTATATTTT
66731746 TATATATGTA
1 TATATATGTA
66731756 CATGTGTATA
Statistics
Matches: 31, Mismatches: 4, Indels: 9
0.70 0.09 0.20
Matches are distributed among these distances:
13 8 0.26
14 4 0.13
15 1 0.03
16 13 0.42
17 5 0.16
ACGTcount: A:0.33, C:0.00, G:0.07, T:0.60
Consensus pattern (16 bp):
TATATATGTATATTTT
Found at i:66739267 original size:44 final size:44
Alignment explanation
Indices: 66739219--66739353 Score: 121
Period size: 44 Copynumber: 3.1 Consensus size: 44
66739209 AGATACCAGC
* *
66739219 CTTGCCTCCCTGGGTTGTAGTGGAGTAGGTTGAAAATAGTAGAT
1 CTTGCCTCCCTGGGTTGTAGTGGAGTAGGTTGAAGATAGCAGAT
* ** * * ** * * * *
66739263 CTTGCCT-TCTGCATCGACAACGAAGTAGATTGAAGATACCAGCT
1 CTTGCCTCCCTGGGTTG-TAGTGGAGTAGGTTGAAGATAGCAGAT
*
66739307 -TTGCCTCCCTGGGTTGTAGTGGAGCAGGTTGAAGATAGCAGAT
1 CTTGCCTCCCTGGGTTGTAGTGGAGTAGGTTGAAGATAGCAGAT
66739350 CTTG
1 CTTG
66739354 TCTTCATGTA
Statistics
Matches: 63, Mismatches: 25, Indels: 6
0.67 0.27 0.06
Matches are distributed among these distances:
43 30 0.48
44 33 0.52
ACGTcount: A:0.24, C:0.19, G:0.29, T:0.29
Consensus pattern (44 bp):
CTTGCCTCCCTGGGTTGTAGTGGAGTAGGTTGAAGATAGCAGAT
Found at i:66739311 original size:87 final size:87
Alignment explanation
Indices: 66739161--66739358 Score: 288
Period size: 87 Copynumber: 2.3 Consensus size: 87
66739151 AACAGATTAG
* * *
66739161 TGAAAATAGCAGATCTTGCCTTCCTGTACCGGCAGCGAAGCAGATCGAAGATACCAGCCTTGCCT
1 TGAAAATAGCAGATCTTGCCTT-CTGCACCGACAACGAAGCAGATCGAAGATACCAGCCTTGCCT
*
66739226 CCCTGGGTTGTAGTGGAGTAGGT
65 CCCTGGGTTGTAGTGGAGCAGGT
* * * * *
66739249 TGAAAATAGTAGATCTTGCCTTCTGCATCGACAACGAAGTAGATTGAAGATACCAGCTTTGCCTC
1 TGAAAATAGCAGATCTTGCCTTCTGCACCGACAACGAAGCAGATCGAAGATACCAGCCTTGCCTC
66739314 CCTGGGTTGTAGTGGAGCAGGT
66 CCTGGGTTGTAGTGGAGCAGGT
* *
66739336 TGAAGATAGCAGATCTTGTCTTC
1 TGAAAATAGCAGATCTTGCCTTC
66739359 ATGTATTGAC
Statistics
Matches: 98, Mismatches: 12, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
87 77 0.79
88 21 0.21
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (87 bp):
TGAAAATAGCAGATCTTGCCTTCTGCACCGACAACGAAGCAGATCGAAGATACCAGCCTTGCCTC
CCTGGGTTGTAGTGGAGCAGGT
Found at i:66739339 original size:43 final size:43
Alignment explanation
Indices: 66739207--66739343 Score: 114
Period size: 43 Copynumber: 3.2 Consensus size: 43
66739197 GAAGCAGATC
*
66739207 GAAGATACCAGCCTTGCCTCCCTGGGTTGTAGTGGAGTAGGTT
1 GAAGATACCAGCTTTGCCTCCCTGGGTTGTAGTGGAGTAGGTT
* ** * * ** * * ** * *
66739250 GAAAATAGTAGATCTTGCCT-TCTGCATCGACAACGAAGTAGATT
1 GAAGATACCAGCT-TTGCCTCCCTGGGTTG-TAGTGGAGTAGGTT
*
66739294 GAAGATACCAGCTTTGCCTCCCTGGGTTGTAGTGGAGCAGGTT
1 GAAGATACCAGCTTTGCCTCCCTGGGTTGTAGTGGAGTAGGTT
66739337 GAAGATA
1 GAAGATA
66739344 GCAGATCTTG
Statistics
Matches: 63, Mismatches: 28, Indels: 6
0.65 0.29 0.06
Matches are distributed among these distances:
43 34 0.54
44 29 0.46
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.27
Consensus pattern (43 bp):
GAAGATACCAGCTTTGCCTCCCTGGGTTGTAGTGGAGTAGGTT
Found at i:66739400 original size:44 final size:44
Alignment explanation
Indices: 66739337--66740061 Score: 449
Period size: 44 Copynumber: 16.6 Consensus size: 44
66739327 GGAGCAGGTT
* *
66739337 GAAGATAGCAGATCTTGTCTTCATGTATTGACGTGAAGTAGATC
1 GAAGATAACAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATC
* *
66739381 GAAGATAACAGATCTTGTCTTCCCATACTAGTGGC--GAAGTAGATC
1 GAAGATAACAGATCTTGTCTT--CAT-GTATTGGCGTGAAGTAGATC
* *
66739426 GAAGA-AAGCAGATCTTGTATTCATGTATTGGCGTGAAGTATATC
1 GAAGATAA-CAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATC
* * * *
66739470 AAAGATGACAAATCTTGTCTTCATGTATTGGC-TAAAGTAGATC
1 GAAGATAACAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATC
* ** * * * * * * *
66739513 AAAGATGGCAGATCTTGCCTTCTTGCATCGACAGCGAAGCAGATC
1 GAAGATAACAGATCTTGTCTTCATGTATTGGC-GTGAAGTAGATC
* * * * * ** ** * * * *
66739558 GAAGATACCAG-CCTTGCCTCCTTGGGTTGTAGTGGAGCAGGTT
1 GAAGATAACAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATC
* * * * *
66739601 GAATATAGCAGATATTTTCTTCACGTATTGGCGTGAAGTAGATC
1 GAAGATAACAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATC
*** * * *
66739645 GAAGATAACAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATC
1 GAAGATAACAGATCTTGTCTTCATGTATTGG-CGTGAAGTAGATC
* *
66739690 GAAGA-AAGCAGATCTTGTATTCATGTATTGGCGTGAAGTATATC
1 GAAGATAA-CAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATC
* * *
66739734 AAAGATGACAGATCTTGTCTTCATGTATTGGCAT-AA--AG-T-
1 GAAGATAACAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATC
* * * * * * *
66739773 --AGAT--CAAATCTTGCCTTCCTGCATCGACAGTGAAGCAGATC
1 GAAGATAACAGATCTTGTCTTCATGTATTGGC-GTGAAGTAGATC
* * * * * ** ** * * * *
66739814 GAAGATACCAG-CCTTGCCTCCTTGGGTTGTAGTGGAGCAGGTT
1 GAAGATAACAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATC
* *
66739857 GAAGATAGCAGATATTGTCTTCATGTATTGGCGTGAAGTAGATC
1 GAAGATAACAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATC
*** * * *
66739901 GAAGATAACAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATC
1 GAAGATAACAGATCTTGTCTTCATGTATTGG-CGTGAAGTAGATC
* * * *
66739946 GAAGA-AAGTAGATCTTGTATTCATGTATTGGTGTGAGGTAGATC
1 GAAGATAA-CAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATC
* * *
66739990 AAAGATGACAGATCTTGTCTTCATGTATTGGCATGAAGTAGATC
1 GAAGATAACAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATC
* * * *
66740034 AAAGATAGCAGATCTTGCCTTCCTGTAT
1 GAAGATAACAGATCTTGTCTTCATGTAT
66740062 CGACAGCGAA
Statistics
Matches: 516, Mismatches: 138, Indels: 54
0.73 0.19 0.08
Matches are distributed among these distances:
35 18 0.03
36 1 0.00
37 6 0.01
39 2 0.00
40 2 0.00
41 1 0.00
42 6 0.01
43 79 0.15
44 278 0.54
45 115 0.22
46 3 0.01
47 5 0.01
ACGTcount: A:0.29, C:0.17, G:0.25, T:0.30
Consensus pattern (44 bp):
GAAGATAACAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATC
Found at i:66739638 original size:264 final size:264
Alignment explanation
Indices: 66739259--66740143 Score: 1412
Period size: 256 Copynumber: 3.4 Consensus size: 264
66739249 TGAAAATAGT
* * * *
66739259 AGATCTTGCCTT-CTGCATCGACAACGAAGTAGATTGAAGATACCAGCTTTGCCTCCCTGGGTTG
1 AGATCTTGCCTTCCTGCATCGACAGCGAAGCAGATCGAAGATACCAGCCTTGCCTCCCTGGGTTG
* *
66739323 TAGTGGAGCAGGTTGAAGATAGCAGATCTTGTCTTCATGTATTGACGTGAAGTAGATCGAAGATA
66 TAGTGGAGCAGGTTGAAGATAGCAGATATTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATA
*
66739388 ACAGATCTTGTCTTCCCATACTAGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTATTCATGTA
131 ACAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTATTCATGTA
*
66739453 TTGGCGTGAAGTATATCAAAGATGACAAATCTTGTCTTCATGTATTGGC-TAAAGTAGATCAAAG
196 TTGGCGTGAAGTATATCAAAGATGACAGATCTTGTCTTCATGTATTGGCATAAAGTAGATCAAAG
66739517 ATGGC
261 AT-GC
* *
66739522 AGATCTTGCCTTCTTGCATCGACAGCGAAGCAGATCGAAGATACCAGCCTTGCCTCCTTGGGTTG
1 AGATCTTGCCTTCCTGCATCGACAGCGAAGCAGATCGAAGATACCAGCCTTGCCTCCCTGGGTTG
* * *
66739587 TAGTGGAGCAGGTTGAATATAGCAGATATTTTCTTCACGTATTGGCGTGAAGTAGATCGAAGATA
66 TAGTGGAGCAGGTTGAAGATAGCAGATATTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATA
66739652 ACAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTATTCATGTA
131 ACAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTATTCATGTA
66739717 TTGGCGTGAAGTATATCAAAGATGACAGATCTTGTCTTCATGTATTGGCATAAAGTAGATC----
196 TTGGCGTGAAGTATATCAAAGATGACAGATCTTGTCTTCATGTATTGGCATAAAGTAGATCAAAG
66739778 A---
261 ATGC
* *
66739779 A-ATCTTGCCTTCCTGCATCGACAGTGAAGCAGATCGAAGATACCAGCCTTGCCTCCTTGGGTTG
1 AGATCTTGCCTTCCTGCATCGACAGCGAAGCAGATCGAAGATACCAGCCTTGCCTCCCTGGGTTG
66739843 TAGTGGAGCAGGTTGAAGATAGCAGATATTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATA
66 TAGTGGAGCAGGTTGAAGATAGCAGATATTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATA
*
66739908 ACAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGAAAGTAGATCTTGTATTCATGTA
131 ACAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTATTCATGTA
* * * *
66739973 TTGGTGTGAGGTAGATCAAAGATGACAGATCTTGTCTTCATGTATTGGCATGAAGTAGATCAAAG
196 TTGGCGTGAAGTATATCAAAGATGACAGATCTTGTCTTCATGTATTGGCATAAAGTAGATCAAAG
66740038 ATAGC
261 AT-GC
* * *
66740043 AGATCTTGCCTTCCTGTATCGACAGCGAAGCAGATTGAAGATACCAGTCTTGCCTCCCTGGGTTG
1 AGATCTTGCCTTCCTGCATCGACAGCGAAGCAGATCGAAGATACCAGCCTTGCCTCCCTGGGTTG
* * * * * * *
66740108 TAGCGAAGTAGATTGAAAATAGCAGATCTTGCCTTC
66 TAGTGGAGCAGGTTGAAGATAGCAGATATTGTCTTC
66740144 CTGCACCGAC
Statistics
Matches: 576, Mismatches: 35, Indels: 20
0.91 0.06 0.03
Matches are distributed among these distances:
256 244 0.42
257 1 0.00
260 1 0.00
261 1 0.00
263 12 0.02
264 219 0.38
265 98 0.17
ACGTcount: A:0.28, C:0.18, G:0.25, T:0.29
Consensus pattern (264 bp):
AGATCTTGCCTTCCTGCATCGACAGCGAAGCAGATCGAAGATACCAGCCTTGCCTCCCTGGGTTG
TAGTGGAGCAGGTTGAAGATAGCAGATATTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATA
ACAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTATTCATGTA
TTGGCGTGAAGTATATCAAAGATGACAGATCTTGTCTTCATGTATTGGCATAAAGTAGATCAAAG
ATGC
Found at i:66740094 original size:44 final size:44
Alignment explanation
Indices: 66740035--66740146 Score: 136
Period size: 44 Copynumber: 2.5 Consensus size: 44
66740025 AAGTAGATCA
*
66740035 AAGATAGCAGATCTTGCCTTCCTGTATCGACAGCGAAGCAGATTG
1 AAGATAGCAGATCTTGCCTTCCTGGATCG-CAGCGAAGCAGATTG
* * * * * *
66740080 AAGATACCAG-TCTTGCCTCCCTGGGTTGTAGCGAAGTAGATTG
1 AAGATAGCAGATCTTGCCTTCCTGGATCGCAGCGAAGCAGATTG
*
66740123 AAAATAGCAGATCTTGCCTTCCTG
1 AAGATAGCAGATCTTGCCTTCCTG
66740147 CACCGACAAT
Statistics
Matches: 56, Mismatches: 10, Indels: 3
0.81 0.14 0.04
Matches are distributed among these distances:
43 21 0.38
44 26 0.46
45 9 0.16
ACGTcount: A:0.27, C:0.22, G:0.24, T:0.27
Consensus pattern (44 bp):
AAGATAGCAGATCTTGCCTTCCTGGATCGCAGCGAAGCAGATTG
Found at i:66740164 original size:45 final size:45
Alignment explanation
Indices: 66740024--66740165 Score: 128
Period size: 44 Copynumber: 3.2 Consensus size: 45
66740014 GTATTGGCAT
* * *
66740024 GAAGTAGA-TCAAAGATAGCAGATCTTGCCTTCCTGTATCGACAGC
1 GAAGTAGATTGAAA-ATAGCAGATCTTGCCTTCCTGCATCGACAAC
* * * * ** * * *
66740069 GAAGCAGATTGAAGATACCAG-TCTTGCCTCCCTGGGTTG-TAGC
1 GAAGTAGATTGAAAATAGCAGATCTTGCCTTCCTGCATCGACAAC
* *
66740112 GAAGTAGATTGAAAATAGCAGATCTTGCCTTCCTGCACCGACAAT
1 GAAGTAGATTGAAAATAGCAGATCTTGCCTTCCTGCATCGACAAC
66740157 GAAGTAGAT
1 GAAGTAGAT
66740166 CGATGACCCC
Statistics
Matches: 74, Mismatches: 20, Indels: 6
0.74 0.20 0.06
Matches are distributed among these distances:
43 21 0.28
44 27 0.36
45 23 0.31
46 3 0.04
ACGTcount: A:0.30, C:0.21, G:0.24, T:0.25
Consensus pattern (45 bp):
GAAGTAGATTGAAAATAGCAGATCTTGCCTTCCTGCATCGACAAC
Found at i:66740188 original size:88 final size:88
Alignment explanation
Indices: 66740024--66740191 Score: 194
Period size: 88 Copynumber: 1.9 Consensus size: 88
66740014 GTATTGGCAT
* * * * *
66740024 GAAGTAGATCAAAGATAGCAGATCTTGCCTTCCTGTATCGACAGCGAAGCAGATTGAAGATACCA
1 GAAGTAGATCAAAGATAGCAGATCTTGCCTTCCTGCACCGACAACGAAGCAGATCGAAGACACCA
* * *
66740089 GTCTTGCCTCCCTGGGTTGTAGC
66 GCCCTACCTCCCTGGGTTGTAGC
* * * * *
66740112 GAAGTAGATTGAAA-ATAGCAGATCTTGCCTTCCTGCACCGACAATGAAGTAGATCGATGACCCC
1 GAAGTAGA-TCAAAGATAGCAGATCTTGCCTTCCTGCACCGACAACGAAGCAGATCGAAGACACC
*
66740176 AGCCCTATCTCCCTGG
65 AGCCCTACCTCCCTGG
66740192 ACAGCAGTGG
Statistics
Matches: 65, Mismatches: 14, Indels: 2
0.80 0.17 0.02
Matches are distributed among these distances:
88 61 0.94
89 4 0.06
ACGTcount: A:0.28, C:0.25, G:0.23, T:0.24
Consensus pattern (88 bp):
GAAGTAGATCAAAGATAGCAGATCTTGCCTTCCTGCACCGACAACGAAGCAGATCGAAGACACCA
GCCCTACCTCCCTGGGTTGTAGC
Found at i:66740244 original size:44 final size:44
Alignment explanation
Indices: 66740179--66740311 Score: 221
Period size: 44 Copynumber: 3.0 Consensus size: 44
66740169 TGACCCCAGC
* *
66740179 CCTATCTCCCTGGACAGCAGTGGAATAGGCTGAAGATTGTGAAT
1 CCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAAT
* *
66740223 CCTATCTCCCTGGTCAACAGTGAAATAGGTTGAAGATTGTGAAT
1 CCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAAT
*
66740267 CATATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAAT
1 CCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAAT
66740311 C
1 C
66740312 TTACTTTCCT
Statistics
Matches: 82, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
44 82 1.00
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.28
Consensus pattern (44 bp):
CCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAAT
Found at i:66740666 original size:44 final size:43
Alignment explanation
Indices: 66740569--66740868 Score: 150
Period size: 44 Copynumber: 6.9 Consensus size: 43
66740559 GAAGATTGCA
* *
66740569 AATCTTATCTCGCTAAAGTTGCAGTGGAGCAGATTAAAGCCAAT
1 AATCTTATCTCCCT-AAGTTGCAGTGGAGCAGATTAAAACCAAT
* * *
66740613 AATCCTATCTCCCTAATGTTGCAGTGGAGCGGATTAAAATCACA-
1 AATCTTATCTCCCTAA-GTTGCAGTGGAGCAGATTAAAACCA-AT
* * * * *** *
66740657 GATCTTATCTCTCTGAAGTTGCAG-AGAACAGA-TCGCATC--T
1 AATCTTATCTCCCT-AAGTTGCAGTGGAGCAGATTAAAACCAAT
* * * * *
66740697 AGTCTTATCTCCCTGAAGTTGCAATGGAGAAGACTAAGTAAGC-A-
1 AATCTTATCTCCCT-AAGTTGCAGTGGAGCAGATTAA--AACCAAT
* * * * * *****
66740741 AGTCTTATC-CTCCTGAAGTTCCAGT-GAGGCAAACTGAAGATGGCG
1 AATCTTATCTC-CCT-AAGTTGCAGTGGA-GCAGA-TTAAAACCAAT
66740786 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAACCAAT
1 AATCTTATCTCCCT-AAGTTGCAGTGGAGCAGATTAAAACCAAT
* *
66740830 AATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAA
1 AATCTTATCTCCCT-AAGTTGCAGTGGAGCAGATTAAAA
66740869 GAGATCTTAT
Statistics
Matches: 193, Mismatches: 47, Indels: 32
0.71 0.17 0.12
Matches are distributed among these distances:
40 20 0.10
41 5 0.03
42 5 0.03
43 11 0.06
44 119 0.62
45 30 0.16
46 3 0.02
ACGTcount: A:0.31, C:0.21, G:0.21, T:0.27
Consensus pattern (43 bp):
AATCTTATCTCCCTAAGTTGCAGTGGAGCAGATTAAAACCAAT
Found at i:66741024 original size:45 final size:45
Alignment explanation
Indices: 66740911--66741035 Score: 153
Period size: 45 Copynumber: 2.8 Consensus size: 45
66740901 GATTGCATCT
* * * *
66740911 AGTCTTATCCCCCTGAGGTTGCAAT-GAGGCAAACTCAAGAAAGAA
1 AGTCTTATCCCCCTGAAGTTGCAGTGGA-GCAGACCCAAGAAAGAA
* * *
66740956 AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACCCAAGAGAGCA
1 AGTCTTATCCCCCTGAAGTTGCAGTGGAGCAGACCCAAGAAAGAA
* *
66741001 AGTCTTATCCCCCTGAAATTGCAGTGGGGCAGACC
1 AGTCTTATCCCCCTGAAGTTGCAGTGGAGCAGACC
66741036 GAATAAACAA
Statistics
Matches: 69, Mismatches: 10, Indels: 2
0.85 0.12 0.02
Matches are distributed among these distances:
45 67 0.97
46 2 0.03
ACGTcount: A:0.30, C:0.25, G:0.25, T:0.21
Consensus pattern (45 bp):
AGTCTTATCCCCCTGAAGTTGCAGTGGAGCAGACCCAAGAAAGAA
Found at i:66741051 original size:215 final size:216
Alignment explanation
Indices: 66740560--66741079 Score: 571
Period size: 215 Copynumber: 2.4 Consensus size: 216
66740550 TAAAAGACTG
* * * * ** **
66740560 AAGATTGCAAATCTTATCTCGCT-AAAGTTGCAGTGGAGCAGATTAAAGCCAATAATCCTATCTC
1 AAGATGGCGAATCTTATCCCCCTGAAA-TTGCAGTGGAGCAGACGAAAAACAATAATCCTATCTC
*
66740624 CCT-AATGTTGCAGTGGAGCGGATTAAAATCACAGATCTTATCTCTCTGAAGTTGCAGAGAACAG
65 CCTGAA-GTTGCAGTGGAGCGGATTAAAA-CACAGATCTTATCTCTCTGAAGTTACAGAGAACAG
* * *
66740688 ATCGCATCTAGTCTTATCTCCCTGAAGTTGCAATGGAGAAGACTAAGTAAGCAAGTCTTATCCTC
128 ATCGCATCTAGTCTTATCCCCCTGAAGTTGCAATGGAGAAGACTAAGAAAGAAAGTCTTATCCTC
**
66740753 CTGAAGTTCCAGTGAGGCAAACTG
193 CTGAAGTTCCAGTGAGGCAAACCC
* * ** *
66740777 AAGATGGCGAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAACCAATAATCCTATCTCC
1 AAGATGGCGAATCTTATCCCCCTGAAATTGCAGTGGAGCAGACGAAAAACAATAATCCTATCTCC
* * *
66740842 CTGAAGTTGCAGTGGAGCGGATT-AAA-AGAGATCTTATCTCTCTGAAGTTACAGAGAGCAGATT
66 CTGAAGTTGCAGTGGAGCGGATTAAAACACAGATCTTATCTCTCTGAAGTTACAGAGAACAGATC
*
66740905 GCATCTAGTCTTATCCCCCTGAGGTTGCAAT-GAGGCAA-ACTCAAGAAAGAAAGTCTTAT-CTC
131 GCATCTAGTCTTATCCCCCTGAAGTTGCAATGGA-G-AAGACT-AAGAAAGAAAGTCTTATCCT-
* *
66740967 CCTGAAGTTGCAGTG-GAGCAGACCC
192 CCTGAAGTTCCAGTGAG-GCAAACCC
*
66740992 AAGA-GAGC-AAGTCTTATCCCCCTGAAATTGCAGTGGGGCAGACCGAATAAAC-A-AATCCTAT
1 AAGATG-GCGAA-TCTTATCCCCCTGAAATTGCAGTGGAGCAGA-CGAA-AAACAATAATCCTAT
* * *
66741053 CTCCTTGGCA-TTGCAGTGGAGTGGATT
62 CTCCCT-GAAGTTGCAGTGGAGCGGATT
66741080 GAAGCATTAG
Statistics
Matches: 265, Mismatches: 26, Indels: 26
0.84 0.08 0.08
Matches are distributed among these distances:
213 2 0.01
214 72 0.27
215 99 0.37
216 8 0.03
217 80 0.30
218 4 0.02
ACGTcount: A:0.31, C:0.21, G:0.22, T:0.26
Consensus pattern (216 bp):
AAGATGGCGAATCTTATCCCCCTGAAATTGCAGTGGAGCAGACGAAAAACAATAATCCTATCTCC
CTGAAGTTGCAGTGGAGCGGATTAAAACACAGATCTTATCTCTCTGAAGTTACAGAGAACAGATC
GCATCTAGTCTTATCCCCCTGAAGTTGCAATGGAGAAGACTAAGAAAGAAAGTCTTATCCTCCTG
AAGTTCCAGTGAGGCAAACCC
Found at i:66742565 original size:16 final size:18
Alignment explanation
Indices: 66742529--66742565 Score: 51
Period size: 16 Copynumber: 2.2 Consensus size: 18
66742519 TATTTCCCTA
*
66742529 TATATATATGTATATTTT
1 TATATATATGTATATTAT
66742547 TATATA-ATGTA-ATTAT
1 TATATATATGTATATTAT
66742563 TAT
1 TAT
66742566 TCAGTTTTTC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
16 7 0.39
17 5 0.28
18 6 0.33
ACGTcount: A:0.38, C:0.00, G:0.05, T:0.57
Consensus pattern (18 bp):
TATATATATGTATATTAT
Found at i:66745684 original size:27 final size:27
Alignment explanation
Indices: 66745654--66745711 Score: 89
Period size: 27 Copynumber: 2.1 Consensus size: 27
66745644 AAAAAATAGC
*
66745654 CCTTTGTGGCCAACTCTAAAAGGAATT
1 CCTTTGTGGCAAACTCTAAAAGGAATT
* *
66745681 CCTTTGTGGGAAACTCTAAATGGAATT
1 CCTTTGTGGCAAACTCTAAAAGGAATT
66745708 CCTT
1 CCTT
66745712 GATGGCACGT
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.33
Consensus pattern (27 bp):
CCTTTGTGGCAAACTCTAAAAGGAATT
Found at i:66749486 original size:28 final size:27
Alignment explanation
Indices: 66749445--66749515 Score: 72
Period size: 28 Copynumber: 2.6 Consensus size: 27
66749435 AACATCTAGG
*
66749445 AAAAGAATAGCTTT-CGAGGAAAACTCCA
1 AAAAGAATACCTTTAC-A-GAAAACTCCA
* **
66749473 AAAAGAATTCCTTTACAGAAAACTCTG
1 AAAAGAATACCTTTACAGAAAACTCCA
66749500 AAAAGAATAACCTTTA
1 AAAAGAAT-ACCTTTA
66749516 TGTCAAACTT
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
27 16 0.44
28 19 0.53
29 1 0.03
ACGTcount: A:0.48, C:0.17, G:0.13, T:0.23
Consensus pattern (27 bp):
AAAAGAATACCTTTACAGAAAACTCCA
Found at i:66750847 original size:18 final size:18
Alignment explanation
Indices: 66750821--66750855 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
66750811 TTATAAATAA
*
66750821 TATTTAAATAAAAAGAAT
1 TATTAAAATAAAAAGAAT
66750839 TATTAAAATAAAAAGAA
1 TATTAAAATAAAAAGAA
66750856 ACCTCCTAAC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.66, C:0.00, G:0.06, T:0.29
Consensus pattern (18 bp):
TATTAAAATAAAAAGAAT
Found at i:66768778 original size:6 final size:6
Alignment explanation
Indices: 66768767--66768795 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
66768757 GTAATCCACG
66768767 ATTTTT ATTTTT ATTTTT ATTTTT ATTTT
1 ATTTTT ATTTTT ATTTTT ATTTTT ATTTT
66768796 AAACCAAAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.17, C:0.00, G:0.00, T:0.83
Consensus pattern (6 bp):
ATTTTT
Found at i:66769905 original size:24 final size:24
Alignment explanation
Indices: 66769878--66769941 Score: 83
Period size: 24 Copynumber: 2.7 Consensus size: 24
66769868 ATAAACACCA
66769878 AAAAAAATTTTAAAAAAGTATTTT
1 AAAAAAATTTTAAAAAAGTATTTT
* **
66769902 AAAAATATTAAAAAAAAGTATTTT
1 AAAAAAATTTTAAAAAAGTATTTT
* *
66769926 AAAATATTTTTAAAAA
1 AAAAAAATTTTAAAAA
66769942 TAAAAAATGA
Statistics
Matches: 32, Mismatches: 8, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
24 32 1.00
ACGTcount: A:0.61, C:0.00, G:0.03, T:0.36
Consensus pattern (24 bp):
AAAAAAATTTTAAAAAAGTATTTT
Found at i:66769916 original size:35 final size:34
Alignment explanation
Indices: 66769877--66769943 Score: 91
Period size: 35 Copynumber: 1.9 Consensus size: 34
66769867 AATAAACACC
66769877 AAAAAAA-ATTTTAAAAAAGTATTTTAAAAATATTA
1 AAAAAAAGATTTTAAAAAA-T-TTTTAAAAATATTA
*
66769912 AAAAAAAGTATTTTAAAATATTTTTAAAAATA
1 AAAAAAAG-ATTTTAAAAAATTTTTAAAAATA
66769944 AAAAATGAAA
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
35 18 0.62
36 1 0.03
37 10 0.34
ACGTcount: A:0.61, C:0.00, G:0.03, T:0.36
Consensus pattern (34 bp):
AAAAAAAGATTTTAAAAAATTTTTAAAAATATTA
Found at i:66773185 original size:10 final size:10
Alignment explanation
Indices: 66773170--66773221 Score: 50
Period size: 11 Copynumber: 5.0 Consensus size: 10
66773160 TTATCATACT
*
66773170 AAAATTATAA
1 AAAATTAAAA
66773180 AAAATTCAAAA
1 AAAATT-AAAA
66773191 AAAATCTAAAA
1 AAAAT-TAAAA
* *
66773202 AAAATTTAAG
1 AAAATTAAAA
*
66773212 AAAGTTAAAA
1 AAAATTAAAA
66773222 GATCAAAAAA
Statistics
Matches: 34, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
10 16 0.47
11 17 0.50
12 1 0.03
ACGTcount: A:0.69, C:0.04, G:0.04, T:0.23
Consensus pattern (10 bp):
AAAATTAAAA
Found at i:66775774 original size:11 final size:12
Alignment explanation
Indices: 66775751--66775776 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
66775741 CATTTGGTCC
66775751 TTTTACTATTTT
1 TTTTACTATTTT
66775763 TTTTACTATTTT
1 TTTTACTATTTT
66775775 TT
1 TT
66775777 CGGTCACTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.15, C:0.08, G:0.00, T:0.77
Consensus pattern (12 bp):
TTTTACTATTTT
Found at i:66780179 original size:19 final size:18
Alignment explanation
Indices: 66780148--66780199 Score: 61
Period size: 18 Copynumber: 2.9 Consensus size: 18
66780138 TTTGAAGTTC
*
66780148 TTTTATTTATTTATAAAA
1 TTTTATTTTTTTATAAAA
*
66780166 TTTTAATTTTTTTAT-TAA
1 TTTT-ATTTTTTTATAAAA
*
66780184 TTTTATATTTTTATAA
1 TTTTATTTTTTTATAA
66780200 TTTATTATAA
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
17 9 0.32
18 10 0.36
19 9 0.32
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (18 bp):
TTTTATTTTTTTATAAAA
Found at i:66780653 original size:16 final size:18
Alignment explanation
Indices: 66780626--66780658 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
66780616 TTCATTGCAA
66780626 ATTTTGAAATTA-TAAAG
1 ATTTTGAAATTAGTAAAG
66780643 ATTTT-AAATTAGTAAA
1 ATTTTGAAATTAGTAAA
66780659 TATAAAATTG
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
17 9 0.60
ACGTcount: A:0.48, C:0.00, G:0.09, T:0.42
Consensus pattern (18 bp):
ATTTTGAAATTAGTAAAG
Found at i:66783321 original size:59 final size:59
Alignment explanation
Indices: 66783215--66783326 Score: 140
Period size: 59 Copynumber: 1.9 Consensus size: 59
66783205 TGAACCTAAG
* **
66783215 AAAAAGCTTAGGTACCAAATTAGGAAAACATGCCAATTTCAGGTATCAAATTGGGCCCA
1 AAAAAGCTTAGGTACCAAATTAAGAAAACATGCCAATTTCAAATATCAAATTGGGCCCA
*
66783274 AAAAAG-TATAGGTACCAAATTAAGAAAA-AGTGTCAAGTTT-AAATATCAAATTG
1 AAAAAGCT-TAGGTACCAAATTAAGAAAACA-TGCCAA-TTTCAAATATCAAATTG
66783327 AGGTTACTTT
Statistics
Matches: 46, Mismatches: 4, Indels: 6
0.82 0.07 0.11
Matches are distributed among these distances:
58 2 0.04
59 41 0.89
60 3 0.07
ACGTcount: A:0.46, C:0.13, G:0.17, T:0.24
Consensus pattern (59 bp):
AAAAAGCTTAGGTACCAAATTAAGAAAACATGCCAATTTCAAATATCAAATTGGGCCCA
Found at i:66783527 original size:21 final size:21
Alignment explanation
Indices: 66783502--66783542 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
66783492 TCATAAAGCT
66783502 TATTTATA-TTTTAATTAATCA
1 TATTT-TAGTTTTAATTAATCA
66783523 TATTTTAGTTTTAATTAATC
1 TATTTTAGTTTTAATTAATC
66783543 TTAATTTACT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 2 0.11
21 17 0.89
ACGTcount: A:0.34, C:0.05, G:0.02, T:0.59
Consensus pattern (21 bp):
TATTTTAGTTTTAATTAATCA
Found at i:66783550 original size:21 final size:20
Alignment explanation
Indices: 66783508--66783567 Score: 68
Period size: 21 Copynumber: 3.0 Consensus size: 20
66783498 AGCTTATTTA
* *
66783508 TATTTTAATTAATCATATTT
1 TATTTTAATTAATCTTAATT
66783528 TAGTTTTAATTAATCTTAATT
1 TA-TTTTAATTAATCTTAATT
* *
66783549 TA-CTTAATTAAGCTTAATT
1 TATTTTAATTAATCTTAATT
66783568 GTTAATTTCG
Statistics
Matches: 35, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
19 15 0.43
20 2 0.06
21 18 0.51
ACGTcount: A:0.35, C:0.07, G:0.03, T:0.55
Consensus pattern (20 bp):
TATTTTAATTAATCTTAATT
Found at i:66791326 original size:2 final size:2
Alignment explanation
Indices: 66791316--66791346 Score: 55
Period size: 2 Copynumber: 16.0 Consensus size: 2
66791306 CATACCACAC
66791316 AT AT A- AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
66791347 CAATTCATTC
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 27 0.96
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:66792975 original size:42 final size:42
Alignment explanation
Indices: 66792928--66793140 Score: 119
Period size: 42 Copynumber: 5.0 Consensus size: 42
66792918 TAGTGGCATT
*
66792928 TTTGTACAAAAACGCTGCTAAAGAATATGTTCTTTAGCGGCG
1 TTTGTACAAAAACGCCGCTAAAGAATATGTTCTTTAGCGGCG
* * * * * * * *
66792970 TTTGTAAAAAAACTGCCACAAAATATTATGATCTCTAGCGGCAT
1 TTTGTACAAAAAC-GCCGCTAAAGAATATGTTCTTTAGCGGC-G
* * * *
66793014 TTTCTAC-AAAGCGCCGTTAAAGAACATGTTCTTTAGCGGCG
1 TTTGTACAAAAACGCCGCTAAAGAATATGTTCTTTAGCGGCG
** * * * * * * * *
66793055 CATATTCACAAACACCACTAAAG-ATCATATCCTTTAGCGGCAC
1 TTTGTACAAAAACGCCGCTAAAGAAT-ATGTTCTTTAGCGGC-G
* * *
66793098 TTAG-AAAAAAACGCCGCTAAAG-ATCATGTTCTTTAGCAGCG
1 TTTGTACAAAAACGCCGCTAAAGAAT-ATGTTCTTTAGCGGCG
66793139 TT
1 TT
66793141 CTTTAGCGGC
Statistics
Matches: 119, Mismatches: 47, Indels: 11
0.67 0.27 0.06
Matches are distributed among these distances:
41 6 0.05
42 83 0.70
43 25 0.21
44 5 0.04
ACGTcount: A:0.34, C:0.21, G:0.17, T:0.28
Consensus pattern (42 bp):
TTTGTACAAAAACGCCGCTAAAGAATATGTTCTTTAGCGGCG
Found at i:66793471 original size:41 final size:41
Alignment explanation
Indices: 66793412--66793520 Score: 137
Period size: 41 Copynumber: 2.7 Consensus size: 41
66793402 AATACCACAT
* * *
66793412 CGGCATAAAGCCTTCTAGGTACAAAGCCAGATATGATACAC
1 CGGCATGAAGCCTGCTAGGCACAAAGCCAGATATGATACAC
* * *
66793453 CGGCATGAAGCCTGCTAGGCATAAAGCCTGATATGGTACAC
1 CGGCATGAAGCCTGCTAGGCACAAAGCCAGATATGATACAC
* * *
66793494 CGACACGAAGCCTGCTAGGCATAAAGC
1 CGGCATGAAGCCTGCTAGGCACAAAGC
66793521 ATAAAGCCTG
Statistics
Matches: 60, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
41 60 1.00
ACGTcount: A:0.33, C:0.26, G:0.24, T:0.17
Consensus pattern (41 bp):
CGGCATGAAGCCTGCTAGGCACAAAGCCAGATATGATACAC
Found at i:66799742 original size:35 final size:35
Alignment explanation
Indices: 66799696--66799802 Score: 135
Period size: 35 Copynumber: 3.1 Consensus size: 35
66799686 CACTCTCTAT
* *
66799696 TTGGCGTGTTTCGATTGGACTTGCTCTTATGAACA
1 TTGGCGTGTTTCGATTGGACTAGCTCTTATGAGCA
* * *
66799731 TTGGCGTGTTTCGGTTGGACTAGCTTTTATGAGTA
1 TTGGCGTGTTTCGATTGGACTAGCTCTTATGAGCA
* *
66799766 TTGGCGTGTTAT-GTTTGGACTAGCTCTTGTGAGCA
1 TTGGCGTGTT-TCGATTGGACTAGCTCTTATGAGCA
66799801 TT
1 TT
66799803 TGATGTGTTT
Statistics
Matches: 62, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
35 61 0.98
36 1 0.02
ACGTcount: A:0.15, C:0.14, G:0.29, T:0.42
Consensus pattern (35 bp):
TTGGCGTGTTTCGATTGGACTAGCTCTTATGAGCA
Found at i:66803019 original size:23 final size:24
Alignment explanation
Indices: 66802970--66803019 Score: 68
Period size: 24 Copynumber: 2.1 Consensus size: 24
66802960 ATATAAACAT
*
66802970 AATGGTTAAAAACTGTAAATTTAA
1 AATGGTTAAAAACTATAAATTTAA
66802994 AATGGTTAAAAA-TAT-AATTTATA
1 AATGGTTAAAAACTATAAATTTA-A
66803017 AAT
1 AAT
66803020 TCATATCAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
22 6 0.25
23 6 0.25
24 12 0.50
ACGTcount: A:0.52, C:0.02, G:0.10, T:0.36
Consensus pattern (24 bp):
AATGGTTAAAAACTATAAATTTAA
Found at i:66805096 original size:24 final size:24
Alignment explanation
Indices: 66805069--66805127 Score: 118
Period size: 24 Copynumber: 2.5 Consensus size: 24
66805059 TGGGAAACAA
66805069 GAAAGCTTTAAACTTGAGAAGAAG
1 GAAAGCTTTAAACTTGAGAAGAAG
66805093 GAAAGCTTTAAACTTGAGAAGAAG
1 GAAAGCTTTAAACTTGAGAAGAAG
66805117 GAAAGCTTTAA
1 GAAAGCTTTAA
66805128 GAAATCAGAT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 35 1.00
ACGTcount: A:0.46, C:0.08, G:0.24, T:0.22
Consensus pattern (24 bp):
GAAAGCTTTAAACTTGAGAAGAAG
Found at i:66805243 original size:38 final size:38
Alignment explanation
Indices: 66805192--66805270 Score: 149
Period size: 38 Copynumber: 2.1 Consensus size: 38
66805182 GACAAAGGCG
66805192 GTTTAGAAGTATTGGATTAGGAAAAGGAAACCTCATTT
1 GTTTAGAAGTATTGGATTAGGAAAAGGAAACCTCATTT
*
66805230 GTTTAGAAGTATTGGATTAGGAAAAGGAAATCTCATTT
1 GTTTAGAAGTATTGGATTAGGAAAAGGAAACCTCATTT
66805268 GTT
1 GTT
66805271 AAAGGGCTAT
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
38 40 1.00
ACGTcount: A:0.35, C:0.06, G:0.24, T:0.34
Consensus pattern (38 bp):
GTTTAGAAGTATTGGATTAGGAAAAGGAAACCTCATTT
Found at i:66809362 original size:880 final size:886
Alignment explanation
Indices: 66807645--66809386 Score: 2818
Period size: 880 Copynumber: 2.0 Consensus size: 886
66807635 GTGACCATCA
** * *
66807645 CACATTCGAAATATCAAAAGGTATCATTTTTAAAACCTGAATATCGATATTTTTGCTTCAGATAA
1 CACATTCGAAATATCAAAAGGTATCATTTTTAAAACCTGAATATCGATACCTTTGCTCCAGACAA
* *
66807710 CAAAAATACAGCATAATAAGGCATTGAATTCATTCTAACTAATAAATATTCAACATGCGTCAATT
66 CAAAAATACAGCATAACAAGGCATTGAATTCATTCTAACTAATAAATATTCAACATGCATCAATT
*
66807775 ACCTCATTAAACCATCGTCAAAACGACCAAAATGACAATTCAAAACATCGAAAATATATCCGACC
131 ACCTCATCAAACCATCGTCAAAACGACCAAAATGACAATTCAAAACATCGAAAATATATCCGACC
* *
66807840 AAGAATCAACCTGACAGGGTCCAAGTCTTTAAATCCTAAAAGCAATATGATCTGACAGCTAGACT
196 AAGAATCAACCTAACAGGGTCCAAGTCCTTAAATCCTAAAAGCAATATGATCTGACAGCTAGACT
* * * * *
66807905 GCATTTCAGTAAATGTGTCAGACTGACACTATATGGTGTGTAGCTTTGGATGGGTATTAAATGCC
261 ACATTTAAGTAAATGTGTCAGACTGAAACTATATGGTGTGTAGCGTTGGACGGGTATTAAATGCC
66807970 CTTAACGGTGTGTTGGGATGGTCGGAGATGGTGTGTAGCAGATGGGGGTAGGAATAACTGCATAT
326 CTTAACGGTGTGTTGGGATGGTCGGAGATGGTGTGTAGCAGATGGGGGTAGGAATAACTGCATAT
* * ** **
66808035 GTTTCTGATATGTTTTGTATCTGAACTGAAACTGTTCTGTTATATAGTTGTTACGCTAATCATGT
391 GTTTCTGATATATTCTGTATCTGAACTGAAACTGTTCTGTTATATAACTGTTACGCTAATCATAC
* * *
66808100 ACGGAATATTATCTGATTCTGATTCTGATTGGAACTTGAGATTTGAGAACCTTTAATTAAATTGT
456 ACAGAATATTATCTGATTCTGATTCTGATTGGAACTTGAAATTTGAGAACCTTTAATTAAACTGT
*
66808165 GTTTCTAATTAAATCTATATTGATTACACACTGAGTTCTCTACTCACTGTGTGGTTGACTGAATT
521 GTTTCTAATTAAATCTATATTGATTACACACTGAGTTCTCTACTCACCGTGTGGTTGACTGAATT
* * * *
66808230 TCAGGTAACTCACAGACTTGATCGGGTCAACGTAGGGGAAGCTCGGTCAATCTAAGTTATTATCG
586 TCAGGTAACTCACAGACTTGATCGGGTCAACGTAGGGAAACCGCGGTCAACCTAAGTTATTATCG
*
66808295 TATTATTTAATTGTCATGTAGTTATGGTATTTCTTAGTGCTATGACTTTTCTAAGATTTTTGAAC
651 TATTATTTAATTGTCATGTAGTTATGGTATTTCTTAGTGCTATGACTTTTCTAAGATTGTTGAAC
*
66808360 CGTCTGTTAGATTTAATGGTTTTTATGACTTGATATTGGGTTTATCTATACTTATGAAAGTAGGT
716 CGTCTGTTAGATTTAATGGTTTTTATGACTCGATATTGGGTTTATCTATACTTATGAAAGTAGGT
* *
66808425 TTCCTTGATAACGTTAATGTAACTTTTCGGACTTGGTCTAGATGCCTAGGACGGGTTTAGGGTGT
781 TTCCTTGATAACGTTAATGTAACTCTTCGGACTTGGTCTAGATGCCTAGGACGGGTTTAGAGTGT
66808490 TACATTTAGTGGTATCATTAAATTGTGTTACTAACTTCCTG
846 TACATTTAGTGGTATCATTAAATTGTGTTACTAACTTCCTG
*
66808531 CACATTTGAAATATCAAAAGGTATCATTTTTAAAACCTGAATATCGATACCTTTGCTCCAGACAA
1 CACATTCGAAATATCAAAAGGTATCATTTTTAAAACCTGAATATCGATACCTTTGCTCCAGACAA
* * *
66808596 CAAAACTACAAG-ATAACAAGGCATTGGATTCATTCTAACTAATAACTATTCAACATGCATCAAT
66 CAAAAATAC-AGCATAACAAGGCATTGAATTCATTCTAACTAATAAATATTCAACATGCATCAAT
* *
66808660 TACCTCATCAAACCATCGTCAAAACGACCAAAATGACAATTCAAAACATCGAAAATATATTCGAG
130 TACCTCATCAAACCATCGTCAAAACGACCAAAATGACAATTCAAAACATCGAAAATATATCCGAC
* *
66808725 CAAGAATCAACCTAACAGGGTCCAAGTCCTTAAATCCTAAGAGCAATATGATCTGGCAGCTAGAC
195 CAAGAATCAACCTAACAGGGTCCAAGTCCTTAAATCCTAAAAGCAATATGATCTGACAGCTAGAC
* *
66808790 TACATTTTAAGTAAATGTGTCAGACTGAAACTATATGTTGTGTAGGGTTGGACGGGTATTAAATG
260 TACA-TTTAAGTAAATGTGTCAGACTGAAACTATATGGTGTGTAGCGTTGGACGGGTATTAAATG
* * *
66808855 CCCTTAACGGTGTGTTGGGATGGTCGGAGATGGTGTGTGGCGGAT-GGGGTAGGAATAATTGCAT
324 CCCTTAACGGTGTGTTGGGATGGTCGGAGATGGTGTGTAGCAGATGGGGGTAGGAATAACTGCAT
* * * * * *
66808919 ATGTTTCTGATCTATTCTGTATCTTAACTGGAACTGTTCTGTTATATAACTGTTATGTTAATCCT
389 ATGTTTCTGATATATTCTGTATCTGAACTGAAACTGTTCTGTTATATAACTGTTACGCTAATCAT
66808984 ACACAG-A-A-TAT-T-A-TCTGATTCTGATTGGAACTTGAAATTTGAGAACCTTTAATTAAACT
454 ACACAGAATATTATCTGATTCTGATTCTGATTGGAACTTGAAATTTGAGAACCTTTAATTAAACT
*
66809043 GTGTTTCTAATTGAATCTATATTGATTACACACTGAGTTCTCTACTCACCGTGTGGTTGACTGAA
519 GTGTTTCTAATTAAATCTATATTGATTACACACTGAGTTCTCTACTCACCGTGTGGTTGACTGAA
* * ** * *
66809108 TTTCAGGTAACTCACAGACTTGCTCGGGTTAGGGTAGGGAAACCGCGGTCGACCTACGTTATTAT
584 TTTCAGGTAACTCACAGACTTGATCGGGTCAACGTAGGGAAACCGCGGTCAACCTAAGTTATTAT
*
66809173 CGTATTATTTAATTGTCATGTAGTTCTGGTATTTCTTAGTGCTATGACTTTTCTAAGATTGTTGA
649 CGTATTATTTAATTGTCATGTAGTTATGGTATTTCTTAGTGCTATGACTTTTCTAAGATTGTTGA
*
66809238 ACCGTCTGTTAGATTTAATGGTTTTTATGACTCGATATTGGGTTTATCTATACTTAT-AGAAGTT
714 ACCGTCTGTTAGATTTAATGGTTTTTATGACTCGATATTGGGTTTATCTATACTTATGA-AAGTA
* * * *
66809302 GGTTTTCTTGATAATGTTAATGTAACTCTTCGGACTTGGTCTAGATGCCTAGGCCGGGTTTAGAT
778 GGTTTCCTTGATAACGTTAATGTAACTCTTCGGACTTGGTCTAGATGCCTAGGACGGGTTTAGAG
66809367 TGTTACATTTAGTGGTATCA
843 TGTTACATTTAGTGGTATCA
66809387 GAGTCAGATT
Statistics
Matches: 789, Mismatches: 64, Indels: 12
0.91 0.07 0.01
Matches are distributed among these distances:
879 1 0.00
880 364 0.46
881 1 0.00
882 1 0.00
883 3 0.00
884 1 0.00
885 1 0.00
886 318 0.40
887 99 0.13
ACGTcount: A:0.30, C:0.16, G:0.19, T:0.35
Consensus pattern (886 bp):
CACATTCGAAATATCAAAAGGTATCATTTTTAAAACCTGAATATCGATACCTTTGCTCCAGACAA
CAAAAATACAGCATAACAAGGCATTGAATTCATTCTAACTAATAAATATTCAACATGCATCAATT
ACCTCATCAAACCATCGTCAAAACGACCAAAATGACAATTCAAAACATCGAAAATATATCCGACC
AAGAATCAACCTAACAGGGTCCAAGTCCTTAAATCCTAAAAGCAATATGATCTGACAGCTAGACT
ACATTTAAGTAAATGTGTCAGACTGAAACTATATGGTGTGTAGCGTTGGACGGGTATTAAATGCC
CTTAACGGTGTGTTGGGATGGTCGGAGATGGTGTGTAGCAGATGGGGGTAGGAATAACTGCATAT
GTTTCTGATATATTCTGTATCTGAACTGAAACTGTTCTGTTATATAACTGTTACGCTAATCATAC
ACAGAATATTATCTGATTCTGATTCTGATTGGAACTTGAAATTTGAGAACCTTTAATTAAACTGT
GTTTCTAATTAAATCTATATTGATTACACACTGAGTTCTCTACTCACCGTGTGGTTGACTGAATT
TCAGGTAACTCACAGACTTGATCGGGTCAACGTAGGGAAACCGCGGTCAACCTAAGTTATTATCG
TATTATTTAATTGTCATGTAGTTATGGTATTTCTTAGTGCTATGACTTTTCTAAGATTGTTGAAC
CGTCTGTTAGATTTAATGGTTTTTATGACTCGATATTGGGTTTATCTATACTTATGAAAGTAGGT
TTCCTTGATAACGTTAATGTAACTCTTCGGACTTGGTCTAGATGCCTAGGACGGGTTTAGAGTGT
TACATTTAGTGGTATCATTAAATTGTGTTACTAACTTCCTG
Found at i:66818284 original size:25 final size:25
Alignment explanation
Indices: 66818238--66818286 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 25
66818228 AATGTGAAAG
* *
66818238 TCCAAACTGACACCGAATCTAAAAT
1 TCCAAACTGAAACCGAAACTAAAAT
* *
66818263 TCCAAACTGAAAGCTAAACTAAAA
1 TCCAAACTGAAACCGAAACTAAAA
66818287 CCTAAGTCGA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.49, C:0.24, G:0.08, T:0.18
Consensus pattern (25 bp):
TCCAAACTGAAACCGAAACTAAAAT
Found at i:66818933 original size:24 final size:25
Alignment explanation
Indices: 66818906--66818957 Score: 70
Period size: 25 Copynumber: 2.1 Consensus size: 25
66818896 AAATGCCTTG
*
66818906 GAAT-CAAAACCCTAAACAAAAACT
1 GAATCCAAAACCCAAAACAAAAACT
* *
66818930 GAATCCAAACCCCAAAACCAAAACT
1 GAATCCAAAACCCAAAACAAAAACT
66818955 GAA
1 GAA
66818958 AGTGAAAGCC
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
24 4 0.17
25 20 0.83
ACGTcount: A:0.56, C:0.29, G:0.06, T:0.10
Consensus pattern (25 bp):
GAATCCAAAACCCAAAACAAAAACT
Found at i:66819144 original size:728 final size:718
Alignment explanation
Indices: 66817164--66819721 Score: 3449
Period size: 726 Copynumber: 3.6 Consensus size: 718
66817154 AGTTCTAGTT
* ** **
66817164 CTTTAAATTAATATTCTTAAAACCACAAAATATTTGAATGAGCATAGAGTTTTGATGGCTTAAAA
1 CTTTAAAATAATATTCTTAAAACCGGAAAATATTTGAACAAGCATAGAGTTTTGATGGCTTAAAA
* * * * * *
66817229 TGATCCAAATAATCATGAAAATTATGAAATATAAAATACAATTTTT-TATTTTATTTCTTTTTAA
66 CGAGCCAAAAAATCATGAAAATTCTGAAATATAAAATACAATTTTTCAATTTTATTTCATTTTAA
*
66817293 TATTATTGTTATCCAAATTATGTTTTATTATATTAAGCATCATATTAAATTAATTTTCAAAATGT
131 TATTATTGTTATCCAAATTATGTTTTATTAAATTAAGCATCATATTAAATTAATTTTCAAAAT-T
* * *
66817358 TTTGTTGAATTTTTTATTTAAATATATTACAAAATTGTAGAATTATCACTCGTGTTAAGTTACTC
195 TTTGTTGAATTTTTTATTT--ATATATTACAAAATTGTAAAATTATCACACATGTTAAGTTACTC
* * * * * * ** *
66817423 GATAAGTTATTGTACTACCGAAATGCCTTGGAATCTAAATCCCAAACCGAAACCAAATCAAAAAC
258 GGTAAGTTATCGCACAATCGAAATGCCTTGGAATC-AAAACCCAAACAAAAACCAAATCCAAAAC
* *
66817488 CCAAAACCAAAACTGAAAGTGAAAGCCCAAACCTACACCGAGTCTAAAACTCCAAACTGAAAACT
322 CCAAAACCAAAACTGAAAGTGAAAGCCCAAACCGACACCGAATCTAAAACTCCAAACTGAAAACT
* *
66817553 AAACTAAAACCAAAATCGAAAACCCAAACTTAAGGCTTTTAACATATTTGGTAACTACATTTAAG
387 AAACTAAAACCTAAATCGAAAACCCAAACTTAAGGCTTTCAACATATTTGGTAACTACATTTAA-
* **
66817618 GGTTTTTAAAACCATCTATTGTTTCTCATTCTAGTCGAACTTTAAATGATTTCTACTGTATGAAA
451 GCTTTTTAAAACCATCTATTGTTTCTCATTCTAGTCGAACTTTAAATGATTTCTGTTGTATGAAA
* *
66817683 TGTGATC-TTTCAATTGGTTTGTTGTTCTAGCCAAATTGAATTCTGTCTTAGATGAACTAAGCTC
516 TGTGATCTTTTC-ATTGGTTTGTTTTTCTAGCCAAATTGAGTTCTGTCTTAGATGAACTAAGCTC
* *
66817747 CCAAACTAGCCTACTTGAAACAGAAAACCTAGAAATTCTGAGCAAATTGCGACCATTTGTAATAT
580 CCAAAATAGCCTA-TTGAGACAG-AAACCTAGAAATTCTGAGCAAATTGCGACCATTTGTAATAT
66817812 TTTGAGCCCGAAAATCTTAGGCTTTTGGTGATTGGTTTTCATGAAACAAAATTTCTAGTTTTAGA
643 TTTGAGCCC-AAAATCTTAGGCTTTTGGTGATTGGTTTTCATGAAACAAAATTTCTAGTTTTAGA
*
66817877 ATCTCATTTGAC
707 ATCACATTTGAC
* * *
66817889 CTTTAAAATAATATTCTTAAAACCGAAAAATATTTGAACGAGTATAGAGTTTTGATGGCTTAAAA
1 CTTTAAAATAATATTCTTAAAACCGGAAAATATTTGAACAAGCATAGAGTTTTGATGGCTTAAAA
* ** *
66817954 CGAGCCAAATAATCATGAAAATTCTGAAATATAAAATACAATTTTTTTATTTTATTTCTTTTTAA
66 CGAGCCAAAAAATCATGAAAATTCTGAAATATAAAATACAATTTTTCAATTTTATTTCATTTTAA
*
66818019 TATTATTGTTATCTAAATTATGTTTTATTAAATTAAGCATCATATTAAATTAATTTTCAAAATTT
131 TATTATTGTTATCCAAATTATGTTTTATTAAATTAAGCATCATATTAAATTAATTTTCAAAATTT
** * * *
66818084 TTAGTTGAATTTTTTAATTCCTATATTACAAAATTGTAGAATTATCACACATGTTAAGTTACCCA
196 TT-GTTGAATTTTTT-ATTTATATATTACAAAATTGTAAAATTATCACACATGTTAAGTTACTCG
* * *
66818149 GTAAGTTTTCGCACAA-CAGAAATGCCTTGAAATCAAAACCCGAAACAAAAACCAAATCTAAAAC
259 GTAAGTTATCGCACAATC-GAAATGCCTTGGAATCAAAACCC-AAACAAAAACCAAATCCAAAAC
* * * * * * *
66818213 CCAAAATCGAAACTGAATGTGAAAGTCCAAACTGACACCGAATCTAAAATTCCAAACTGAAAGCT
322 CCAAAACCAAAACTGAAAGTGAAAGCCCAAACCGACACCGAATCTAAAACTCCAAACTGAAAACT
* **
66818278 AAACTAAAACCTAAGTCGAAAACCCAAACTTATTGCTTTCAACATATTTGGTAACTACATTTAAA
387 AAACTAAAACCTAAATCGAAAACCCAAACTTAAGGCTTTCAACATATTTGGTAACTACATTT-AA
** *
66818343 GCGTTTCAAAAACCATCTATTGTTTCTTATTCTAGTCGAACTTTAAATGATTTCTGTTGTATGAA
451 GC-TTTTTAAAACCATCTATTGTTTCTCATTCTAGTCGAACTTTAAATGATTTCTGTTGTATGAA
*
66818408 ATGTGATCTTTTCATTGATTTGTTTTTCTAGCCAAATTGAGTTCTGTCTTAGATGAACTAAGCTC
515 ATGTGATCTTTTCATTGGTTTGTTTTTCTAGCCAAATTGAGTTCTGTCTTAGATGAACTAAGCTC
* *
66818473 CCAAAATAGCCTAATTGAGACAGGAAACCTAGAAATTCTGAGCAAATTGCGGCGATTTGTAATAT
580 CCAAAATAGCCT-ATTGAGACA-GAAACCTAGAAATTCTGAGCAAATTGCGACCATTTGTAATAT
* *
66818538 TTTTAGCACCAAAATCTTAGGCTTTTAGTGATTGGTTTTCATGAAACAAAATTTCTAGTTTTAGA
643 TTTGAGC-CCAAAATCTTAGGCTTTTGGTGATTGGTTTTCATGAAACAAAATTTCTAGTTTTAGA
66818603 ATCACATTTGAC
707 ATCACATTTGAC
*
66818615 CTTTAAAATAATATTCTTAAAACGGGAAAATATTTGAACAAGCATAGAGTTTTGATGGCTTAAAA
1 CTTTAAAATAATATTCTTAAAACCGGAAAATATTTGAACAAGCATAGAGTTTTGATGGCTTAAAA
66818680 CGAGCCAAAAAATCATGAAAATTCTGAAATATAAAATACAAAATTTTTCAATTTTATTTCATTTT
66 CGAGCCAAAAAATCATGAAAATTCTGAAATATAAAATAC--AATTTTTCAATTTTATTTCATTTT
* * * * *
66818745 CATATTATTTTTATCCAAATTATGCTTTATTAAATTAA-TATTCATATTAAATTAATTTCCAAAA
129 AATATTATTGTTATCCAAATTATGTTTTATTAAATTAAGCA-TCATATTAAATTAATTTTCAAAA
* *
66818809 TTTTTAGTTGAATTTCTTTATTTATATATTGCAAAATTGTAAAATTATCACACGTGTTAAGTTAC
193 TTTTT-GTTGAATTT-TTTATTTATATATTACAAAATTGTAAAATTATCACACATGTTAAGTTAC
* * **
66818874 TCGGTAGGTTATCACACAATCGAAATGCCTTGGAATCAAAACCCTAAACAAAAACTGAATCCAAA
256 TCGGTAAGTTATCGCACAATCGAAATGCCTTGGAATCAAAACCC-AAACAAAAACCAAATCCAAA
* * *
66818939 CCCCAAAACCAAAACTGAAAGTGAAAGCCCAAACCGACACCAAATCTAAAACTCTAAACTGAAAA
320 ACCCAAAACCAAAACTGAAAGTGAAAGCCCAAACCGACACCGAATCTAAAACTCCAAACTGAAAA
* *
66819004 CTAAACT-AAACCTAAGTTGAAAACCCAAACTTAAGGGCTTTCAACATATTTGGGTAACTACATT
385 CTAAACTAAAACCTAAATCGAAAACCCAAACTTAA-GGCTTTCAACATATTT-GGTAACTACATT
* *
66819068 TAAGTCTTTTTAAAACCATCTATTGTTTCTCATTCTTGTCAAACTTTAAATGATTTCTGTTGTAT
448 TAAG-CTTTTTAAAACCATCTATTGTTTCTCATTCTAGTCGAACTTTAAATGATTTCTGTTGTAT
* * * *
66819133 GAAACGTGATCTTTCCATTGGTTTGTTTTTCTAGCTAAATTGAGTTTTGTCTTAGATGAACTAAG
512 GAAATGTGATCTTTTCATTGGTTTGTTTTTCTAGCCAAATTGAGTTCTGTCTTAGATGAACTAAG
* * *
66819198 CTCCC--AA-AG-----T-AG-C---TACCTAAAAATTATGAGCAAATTGCGACCATTTGTAATA
577 CTCCCAAAATAGCCTATTGAGACAGAAACCTAGAAATTCTGAGCAAATTGCGACCATTTGTAATA
* *
66819250 TTTTGAGCCCCAAAATCTTAGGCTTTTTGGTGATTGGTTTTCATGAAACGAAATTTCTAGCTTTA
642 TTTTGAG-CCCAAAATCTTAGGC-TTTTGGTGATTGGTTTTCATGAAACAAAATTTCTAGTTTTA
66819315 GAATCACATTTGAC
705 GAATCACATTTGAC
*
66819329 CTTTAAAATAATATTCTTAAAACGGGAAAATATTTGAACAAGCATAGAGTTTTGATGGCTT-AAA
1 CTTTAAAATAATATTCTTAAAACCGGAAAATATTTGAACAAGCATAGAGTTTTGATGGCTTAAAA
* * *
66819393 CGAGCCAAAAAAATCATGAAAATTCTAAAATATAAAATATAATTTTTTCCATTTTTATTTCATTT
66 CGAGCC-AAAAAATCATGAAAATTCTGAAATATAAAATACAA-TTTTT-CAATTTTATTTCATTT
66819458 TAATATTATTGTTATCCAAATTATGTTTTATTAAATT-A--AT--T-TT-AATT--TTTT-----
128 TAATATTATTGTTATCCAAATTATGTTTTATTAAATTAAGCATCATATTAAATTAATTTTCAAAA
* ** ** * *
66819509 TTGTTGAATTTTATCATTTATATATATATTACAAAATTATAAAATTATCACACATGTTAAGTTAC
193 TTTTTG--TTGAATTTTTTATTTATATATTACAAAATTGTAAAATTATCACACATGTTAAGTTAC
* * * * * *
66819574 TCGGTAGGTTATCGCACAATCAAAATGTCTTAGAATCAAAACCCCAAACAAAAATCGAATCC-AA
256 TCGGTAAGTTATCGCACAATCGAAATGCCTTGGAATCAAAA-CCCAAACAAAAACCAAATCCAAA
* * * * *
66819638 ACTCCAAAACCGAAACTGAAATTGAAAACCCAAATCGACACCGTATCTAAAACTCCAAACCT-AA
320 AC-CCAAAACCAAAACTGAAAGTGAAAGCCCAAACCGACACCGAATCTAAAACTCCAAA-CTGAA
*
66819702 AACTAAACTGAAACCTAAAT
383 AACTAAACTAAAACCTAAAT
66819722 TGACAACCGG
Statistics
Matches: 1655, Mismatches: 148, Indels: 84
0.88 0.08 0.04
Matches are distributed among these distances:
699 4 0.00
700 161 0.10
701 18 0.01
705 3 0.00
707 4 0.00
708 2 0.00
709 1 0.00
711 1 0.00
712 3 0.00
713 69 0.04
714 194 0.12
717 1 0.00
718 2 0.00
719 1 0.00
724 7 0.00
725 308 0.19
726 436 0.26
727 37 0.02
728 385 0.23
729 18 0.01
ACGTcount: A:0.38, C:0.16, G:0.11, T:0.35
Consensus pattern (718 bp):
CTTTAAAATAATATTCTTAAAACCGGAAAATATTTGAACAAGCATAGAGTTTTGATGGCTTAAAA
CGAGCCAAAAAATCATGAAAATTCTGAAATATAAAATACAATTTTTCAATTTTATTTCATTTTAA
TATTATTGTTATCCAAATTATGTTTTATTAAATTAAGCATCATATTAAATTAATTTTCAAAATTT
TTGTTGAATTTTTTATTTATATATTACAAAATTGTAAAATTATCACACATGTTAAGTTACTCGGT
AAGTTATCGCACAATCGAAATGCCTTGGAATCAAAACCCAAACAAAAACCAAATCCAAAACCCAA
AACCAAAACTGAAAGTGAAAGCCCAAACCGACACCGAATCTAAAACTCCAAACTGAAAACTAAAC
TAAAACCTAAATCGAAAACCCAAACTTAAGGCTTTCAACATATTTGGTAACTACATTTAAGCTTT
TTAAAACCATCTATTGTTTCTCATTCTAGTCGAACTTTAAATGATTTCTGTTGTATGAAATGTGA
TCTTTTCATTGGTTTGTTTTTCTAGCCAAATTGAGTTCTGTCTTAGATGAACTAAGCTCCCAAAA
TAGCCTATTGAGACAGAAACCTAGAAATTCTGAGCAAATTGCGACCATTTGTAATATTTTGAGCC
CAAAATCTTAGGCTTTTGGTGATTGGTTTTCATGAAACAAAATTTCTAGTTTTAGAATCACATTT
GAC
Found at i:66819779 original size:2 final size:2
Alignment explanation
Indices: 66819772--66819799 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
66819762 ACCATCTTAC
66819772 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
66819800 TCTTCTCCCT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:66820181 original size:14 final size:15
Alignment explanation
Indices: 66820152--66820187 Score: 56
Period size: 14 Copynumber: 2.5 Consensus size: 15
66820142 AGGATCTGCT
*
66820152 TGATTGCCAGTAAAA
1 TGATTTCCAGTAAAA
66820167 TGATTTCCA-TAAAA
1 TGATTTCCAGTAAAA
66820181 TGATTTC
1 TGATTTC
66820188 TGGAAAATGT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
14 12 0.60
15 8 0.40
ACGTcount: A:0.36, C:0.14, G:0.14, T:0.36
Consensus pattern (15 bp):
TGATTTCCAGTAAAA
Found at i:66820209 original size:20 final size:20
Alignment explanation
Indices: 66820184--66820223 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
66820174 CATAAAATGA
*
66820184 TTTCTGGAAAATGTTTTACT
1 TTTCTGGAAAATGATTTACT
*
66820204 TTTCTGTAAAATGATTTACT
1 TTTCTGGAAAATGATTTACT
66820224 GGAAAATATT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.28, C:0.10, G:0.12, T:0.50
Consensus pattern (20 bp):
TTTCTGGAAAATGATTTACT
Found at i:66821766 original size:76 final size:76
Alignment explanation
Indices: 66821674--66821834 Score: 304
Period size: 76 Copynumber: 2.1 Consensus size: 76
66821664 TTATTGAAAA
66821674 TTTTATTTACACGTGATTTTTATCCTCTTCGGAACAGTTTTTCACATTAATTTTGTGTGTTCGAT
1 TTTTATTTACACGTGATTTTTATCCTCTTCGGAACAGTTTTTCACATTAATTTTGTGTGTTCGAT
66821739 TTTCTTTACCT
66 TTTCTTTACCT
*
66821750 TTTTATTTGCACGTGATTTTTATCCTCTTCGGAACAGTTTTTCACATTAATTTTGTGTGTTCGAT
1 TTTTATTTACACGTGATTTTTATCCTCTTCGGAACAGTTTTTCACATTAATTTTGTGTGTTCGAT
66821815 TTTCTTTACCT
66 TTTCTTTACCT
66821826 TTTCTATTT
1 TTT-TATTT
66821835 TGTTGTTTAT
Statistics
Matches: 83, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
76 78 0.94
77 5 0.06
ACGTcount: A:0.17, C:0.17, G:0.12, T:0.54
Consensus pattern (76 bp):
TTTTATTTACACGTGATTTTTATCCTCTTCGGAACAGTTTTTCACATTAATTTTGTGTGTTCGAT
TTTCTTTACCT
Found at i:66822086 original size:14 final size:14
Alignment explanation
Indices: 66822067--66822098 Score: 64
Period size: 14 Copynumber: 2.3 Consensus size: 14
66822057 CTAGATTTAG
66822067 GGTTAAAAGTTCAA
1 GGTTAAAAGTTCAA
66822081 GGTTAAAAGTTCAA
1 GGTTAAAAGTTCAA
66822095 GGTT
1 GGTT
66822099 CAAGGTTTAG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.38, C:0.06, G:0.25, T:0.31
Consensus pattern (14 bp):
GGTTAAAAGTTCAA
Found at i:66822124 original size:21 final size:21
Alignment explanation
Indices: 66822100--66822165 Score: 64
Period size: 21 Copynumber: 3.1 Consensus size: 21
66822090 TTCAAGGTTC
66822100 AAGGTTTAGGATCCAAAGTCT
1 AAGGTTTAGGATCCAAAGTCT
*
66822121 AAGGTTTTAAGG-TCTAAAGTCT
1 AAGG-TTT-AGGATCCAAAGTCT
* *
66822143 AAGATTTA-GAGTCCAAGGTCT
1 AAGGTTTAGGA-TCCAAAGTCT
66822164 AA
1 AA
66822166 AGTTCATGGT
Statistics
Matches: 37, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
19 1 0.03
20 1 0.03
21 17 0.46
22 15 0.41
23 3 0.08
ACGTcount: A:0.35, C:0.12, G:0.23, T:0.30
Consensus pattern (21 bp):
AAGGTTTAGGATCCAAAGTCT
Found at i:66823818 original size:12 final size:12
Alignment explanation
Indices: 66823801--66823827 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
66823791 ATTCCTCTTT
66823801 TTTATTTTTATC
1 TTTATTTTTATC
66823813 TTTATTTTTATC
1 TTTATTTTTATC
66823825 TTT
1 TTT
66823828 TTCAAAAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.15, C:0.07, G:0.00, T:0.78
Consensus pattern (12 bp):
TTTATTTTTATC
Found at i:66826099 original size:313 final size:313
Alignment explanation
Indices: 66825531--66826163 Score: 1212
Period size: 313 Copynumber: 2.0 Consensus size: 313
66825521 TACCTATATT
66825531 AGTGTTTCAATTGCTTAATTTTATTGAAAAAGCAAAATGCTTCTGTTTAGTACTAAATCTTTTGC
1 AGTGTTTCAATTGCTTAATTTTATTGAAAAAGCAAAATGCTTCTGTTTAGTACTAAATCTTTTGC
66825596 AAGATGATCCTTGCTTTGCCCTGAAGCTTTTTACTATCTGCAAGCTTAAAATTGCACTTTAAATG
66 AAGATGATCCTTGCTTTGCCCTGAAGCTTTTTACTATCTGCAAGCTTAAAATTGCACTTTAAATG
*
66825661 CCCAAAATAGAGTCTGTCTGAAAACTTTAAGATGAGCTAATACTGTTGTGCCCTATATATTTTGA
131 CCCAAAATAGAGTCTGTCAGAAAACTTTAAGATGAGCTAATACTGTTGTGCCCTATATATTTTGA
*
66825726 ATTTCATATGAAAATATTTTTTATGCTAAATAAAATGAAGTACATCACACCGTTTCATGCCGGAT
196 ATTTCATATGAAAATATTTTTTATGCTAAATAAAATGAAGTACATCACACCATTTCATGCCGGAT
66825791 ATTGTTTGTATTTGACCGTAATACTTTTCATTATTCATTCTTCAAGAAGCCTG
261 ATTGTTTGTATTTGACCGTAATACTTTTCATTATTCATTCTTCAAGAAGCCTG
*
66825844 AGTGTTTCAATTGCTTAATTTTATTGAAAAAGCAAAATGCTTCTGTTTAGTAGTAAATCTTTTGC
1 AGTGTTTCAATTGCTTAATTTTATTGAAAAAGCAAAATGCTTCTGTTTAGTACTAAATCTTTTGC
*
66825909 AAGATGATCCTTGCTTTGCTCTGAAGCTTTTTACTATCTGCAAGCTTAAAATTGCACTTTAAATG
66 AAGATGATCCTTGCTTTGCCCTGAAGCTTTTTACTATCTGCAAGCTTAAAATTGCACTTTAAATG
66825974 CCCAAAATAGAGTCTGTCAGAAAACTTTAAGATGAGCTAATACTGTTGTGCCCTATATATTTTGA
131 CCCAAAATAGAGTCTGTCAGAAAACTTTAAGATGAGCTAATACTGTTGTGCCCTATATATTTTGA
*
66826039 GTTTCATATGAAAATATTTTTTATGCTAAATAAAATGAAGTACATCACACCATTTCATGCCGGAT
196 ATTTCATATGAAAATATTTTTTATGCTAAATAAAATGAAGTACATCACACCATTTCATGCCGGAT
66826104 ATTGTTTGTATTTGACCGTAATACTTTTCATTATTCATTCTTCAAGAAGCCTG
261 ATTGTTTGTATTTGACCGTAATACTTTTCATTATTCATTCTTCAAGAAGCCTG
*
66826157 AATGTTT
1 AGTGTTT
66826164 TTCCTCAGCA
Statistics
Matches: 314, Mismatches: 6, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
313 314 1.00
ACGTcount: A:0.31, C:0.16, G:0.15, T:0.39
Consensus pattern (313 bp):
AGTGTTTCAATTGCTTAATTTTATTGAAAAAGCAAAATGCTTCTGTTTAGTACTAAATCTTTTGC
AAGATGATCCTTGCTTTGCCCTGAAGCTTTTTACTATCTGCAAGCTTAAAATTGCACTTTAAATG
CCCAAAATAGAGTCTGTCAGAAAACTTTAAGATGAGCTAATACTGTTGTGCCCTATATATTTTGA
ATTTCATATGAAAATATTTTTTATGCTAAATAAAATGAAGTACATCACACCATTTCATGCCGGAT
ATTGTTTGTATTTGACCGTAATACTTTTCATTATTCATTCTTCAAGAAGCCTG
Found at i:66841209 original size:54 final size:53
Alignment explanation
Indices: 66841122--66841279 Score: 244
Period size: 54 Copynumber: 2.9 Consensus size: 53
66841112 TTTTATGCAA
*
66841122 GCAAGTCCTTCAACTCAAGAACTCTTTCCATTCATCTTGTGATCACAGGCGCAG
1 GCAAGTCCTTCAACTCAAG-ACTCTTTCCATTCATCTTGTGATCACAGGCACAG
* * *
66841176 GCAACTCCTTCAACTCAGAGGCTCTTTCCATTCACCTTGTGATCACAGGCACAG
1 GCAAGTCCTTCAACTCA-AGACTCTTTCCATTCATCTTGTGATCACAGGCACAG
*
66841230 GCAAGTCCTTCAACTCAAAAACTCTTTCCATTCATCTTGTGATCACAGGC
1 GCAAGTCCTTCAACTC-AAGACTCTTTCCATTCATCTTGTGATCACAGGC
66841280 CAAGATAACA
Statistics
Matches: 94, Mismatches: 8, Indels: 4
0.89 0.08 0.04
Matches are distributed among these distances:
54 91 0.97
55 3 0.03
ACGTcount: A:0.26, C:0.31, G:0.15, T:0.28
Consensus pattern (53 bp):
GCAAGTCCTTCAACTCAAGACTCTTTCCATTCATCTTGTGATCACAGGCACAG
Found at i:66842816 original size:24 final size:24
Alignment explanation
Indices: 66842754--66842825 Score: 67
Period size: 24 Copynumber: 3.0 Consensus size: 24
66842744 AGAAAAATTT
*
66842754 TAAATTTT-AAATTTTTTTATATA
1 TAAATTTTGAAATTTTTTTAAATA
** * *
66842777 T-TCTTTAGAATTTTTTTTTAAATA
1 TAAATTTTGAA-ATTTTTTTAAATA
*
66842801 TAAATTTTGAAATTTTTATAAATA
1 TAAATTTTGAAATTTTTTTAAATA
66842825 T
1 T
66842826 TTTCTAATTT
Statistics
Matches: 36, Mismatches: 10, Indels: 5
0.71 0.20 0.10
Matches are distributed among these distances:
22 3 0.08
23 3 0.08
24 24 0.67
25 6 0.17
ACGTcount: A:0.38, C:0.01, G:0.03, T:0.58
Consensus pattern (24 bp):
TAAATTTTGAAATTTTTTTAAATA
Found at i:66845391 original size:21 final size:21
Alignment explanation
Indices: 66845367--66845406 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
66845357 AATATCATGT
* *
66845367 TAAAATATAAAAATTAATATG
1 TAAAAGATAAAAATAAATATG
66845388 TAAAAGATAAAAATAAATA
1 TAAAAGATAAAAATAAATA
66845407 AATGGAAATA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.68, C:0.00, G:0.05, T:0.28
Consensus pattern (21 bp):
TAAAAGATAAAAATAAATATG
Found at i:66848995 original size:16 final size:16
Alignment explanation
Indices: 66848961--66849001 Score: 55
Period size: 16 Copynumber: 2.6 Consensus size: 16
66848951 GTTTAAGATC
**
66848961 AAACAAAAGCCAATTA
1 AAACAAAAGCCAAAAA
66848977 AAACAAAAGCCAAAAA
1 AAACAAAAGCCAAAAA
*
66848993 AAAAAAAAG
1 AAACAAAAG
66849002 TTTTAAAAAG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.73, C:0.15, G:0.07, T:0.05
Consensus pattern (16 bp):
AAACAAAAGCCAAAAA
Found at i:66855270 original size:9 final size:9
Alignment explanation
Indices: 66855256--66855312 Score: 87
Period size: 9 Copynumber: 6.3 Consensus size: 9
66855246 TTGGTTAAAC
66855256 ATTAACCGA
1 ATTAACCGA
66855265 ATTAACCGA
1 ATTAACCGA
*
66855274 ATTAACTGA
1 ATTAACCGA
*
66855283 ATTATCCGA
1 ATTAACCGA
*
66855292 ATTATCCGA
1 ATTAACCGA
66855301 ATTAACCGA
1 ATTAACCGA
66855310 ATT
1 ATT
66855313 GAATCACTAC
Statistics
Matches: 44, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
9 44 1.00
ACGTcount: A:0.40, C:0.19, G:0.11, T:0.30
Consensus pattern (9 bp):
ATTAACCGA
Found at i:66855392 original size:20 final size:20
Alignment explanation
Indices: 66855344--66855381 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
66855334 ATTTTTAGAC
66855344 TTTTAG-ATTTTAGTTTTAG
1 TTTTAGAATTTTAGTTTTAG
*
66855363 TTTTAGAATTTTATTTTTA
1 TTTTAGAATTTTAGTTTTA
66855382 TTTATTAAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 6 0.35
20 11 0.65
ACGTcount: A:0.24, C:0.00, G:0.11, T:0.66
Consensus pattern (20 bp):
TTTTAGAATTTTAGTTTTAG
Found at i:66867219 original size:32 final size:32
Alignment explanation
Indices: 66867178--66867242 Score: 121
Period size: 32 Copynumber: 2.0 Consensus size: 32
66867168 TGCATCGTAT
66867178 ATCTAAACCTATCTAAACCCACCCACCATTTG
1 ATCTAAACCTATCTAAACCCACCCACCATTTG
*
66867210 ATCTAAACCTATCTAAACTCACCCACCATTTG
1 ATCTAAACCTATCTAAACCCACCCACCATTTG
66867242 A
1 A
66867243 GAGTAACAAT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.35, C:0.35, G:0.03, T:0.26
Consensus pattern (32 bp):
ATCTAAACCTATCTAAACCCACCCACCATTTG
Found at i:66867694 original size:29 final size:29
Alignment explanation
Indices: 66867629--66867696 Score: 75
Period size: 29 Copynumber: 2.3 Consensus size: 29
66867619 CTGATACATT
*
66867629 TATTATTATATATATATATTTAAAATATT
1 TATTATTATATATATATATTTAAAATATA
* * *
66867658 TGTCTATT-TTTATATATATTTAAATTTATA
1 TAT-TATTATATATATATATTTAAA-ATATA
66867688 TATTATTAT
1 TATTATTAT
66867697 TTCTTTATCA
Statistics
Matches: 31, Mismatches: 5, Indels: 5
0.76 0.12 0.12
Matches are distributed among these distances:
29 21 0.68
30 10 0.32
ACGTcount: A:0.38, C:0.01, G:0.01, T:0.59
Consensus pattern (29 bp):
TATTATTATATATATATATTTAAAATATA
Found at i:66868459 original size:10 final size:10
Alignment explanation
Indices: 66868445--66868478 Score: 50
Period size: 10 Copynumber: 3.4 Consensus size: 10
66868435 AAACACACTG
*
66868445 CACCGCACCG
1 CACCGCACCA
66868455 CACCGCACCA
1 CACCGCACCA
*
66868465 CACCACACCA
1 CACCGCACCA
66868475 CACC
1 CACC
66868479 CAACCACCCA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
10 22 1.00
ACGTcount: A:0.29, C:0.62, G:0.09, T:0.00
Consensus pattern (10 bp):
CACCGCACCA
Found at i:66870309 original size:117 final size:116
Alignment explanation
Indices: 66870128--66870360 Score: 448
Period size: 117 Copynumber: 2.0 Consensus size: 116
66870118 ACATTATTTG
66870128 ATTCTCCCTCCATCTTCCAATCTATCTAATTCCTTCCCTATGACAAATTAATTTTCCATCCAAAC
1 ATTCTCCCTCCATCTTCCAATCTATCTAATTCCTTCCCTATGACAAATTAATTTTCCATCCAAAC
66870193 CCTAACAAAAATCCCAATTTTCCTTTTTTTTTTCATCTCAAATGGCACCTT
66 CCTAACAAAAATCCCAATTTTCCTTTTTTTTTTCATCTCAAATGGCACCTT
*
66870244 ATTCTCCCTCCATCTTCCAATCTATCTAATTCCCTTCCCTATGGCAAATTAATTTTCCATCCAAA
1 ATTCTCCCTCCATCTTCCAATCTATCTAATT-CCTTCCCTATGACAAATTAATTTTCCATCCAAA
66870309 CCCTAACAAAAATCCCAATTTTCCTTTTTTTTTTCATCTCAAATGGCACCTT
65 CCCTAACAAAAATCCCAATTTTCCTTTTTTTTTTCATCTCAAATGGCACCTT
66870361 TGGACCCTCA
Statistics
Matches: 115, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
116 31 0.27
117 84 0.73
ACGTcount: A:0.27, C:0.31, G:0.03, T:0.39
Consensus pattern (116 bp):
ATTCTCCCTCCATCTTCCAATCTATCTAATTCCTTCCCTATGACAAATTAATTTTCCATCCAAAC
CCTAACAAAAATCCCAATTTTCCTTTTTTTTTTCATCTCAAATGGCACCTT
Found at i:66871669 original size:23 final size:24
Alignment explanation
Indices: 66871629--66871675 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 24
66871619 AAATTTTAAA
**
66871629 ATATTTATAAAATTTTAT-ATTTT
1 ATATTTATAAAAGATTATAATTTT
*
66871652 ATATTTTTAAAAGATTATAATTTT
1 ATATTTATAAAAGATTATAATTTT
66871676 TTTAAAAGAA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
23 15 0.75
24 5 0.25
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.57
Consensus pattern (24 bp):
ATATTTATAAAAGATTATAATTTT
Found at i:66877041 original size:24 final size:24
Alignment explanation
Indices: 66877014--66877061 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
66877004 AAATTAGTAA
66877014 GTCAAATAAACTACACTAATAAAT
1 GTCAAATAAACTACACTAATAAAT
* * *
66877038 GTCAAATATATTATACTAATAAAT
1 GTCAAATAAACTACACTAATAAAT
66877062 ACTAAATCTT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.52, C:0.12, G:0.04, T:0.31
Consensus pattern (24 bp):
GTCAAATAAACTACACTAATAAAT
Found at i:66879006 original size:24 final size:24
Alignment explanation
Indices: 66878979--66879026 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
66878969 AAATTAGTAA
66878979 GTCAAATAAACTACACTAATAAAT
1 GTCAAATAAACTACACTAATAAAT
* * *
66879003 GTCAAATATATTATACTAATAAAT
1 GTCAAATAAACTACACTAATAAAT
66879027 ACTAAATCTT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.52, C:0.12, G:0.04, T:0.31
Consensus pattern (24 bp):
GTCAAATAAACTACACTAATAAAT
Found at i:66882036 original size:456 final size:456
Alignment explanation
Indices: 66881214--66882722 Score: 1440
Period size: 456 Copynumber: 3.3 Consensus size: 456
66881204 CAACTGCTTC
* * * * *
66881214 CCAGCAAATATCAACCTCTGCTGGTCTGGTGGAATCCCCTCCTTGTCCTGAATCTTCGCTTTCAC
1 CCAGCAAAAATCAACCTCTGCTGATCTGGTGGAATCCCTTCCTTGTCCTGGATCTTAGCTTTCAC
* * * *
66881279 ATTGTCGATCGTGTCTGAGCTCTCCACCTCCAGGGTGATTGT-TTTCCCGGTCAAG-GTCTTCAC
66 ATTGTCGATAGTGTCAGAGCTCTCCACCTCCAAGGTGATAGTCTTT-CCGGT-AAGAGTCTTCAC
* * * * * * *
66881342 GAATATCTGCATCCCTCCTCGAAGTCGTAAAACCAAATGCAGGGTCGATTCCTTTTGGATGTTAT
129 AAAAATCTGCATCCCACCACGAAGACGTAAAACCAAATGGAGGGTCGATTCCTTCTGGATGTTAT
* * * ** * *
66881407 AGTCTGCAAGTGTCCTCCCATCCTCAAGCTGCTTTCCGGCAAAAATCAACCTCTGCTGGTCTGGA
194 AGTCCGCAAGAGTTCGGCCATCTTCAAGCTGCTTTCCGGCAAAAATCAACCTCTGCTGGTCTGGT
* * * * * * * * * * *
66881472 GGAATCCCCTCCTTGTCCTGAATTTTCGCTTTGACATTGTCAATGGTGTCCGAGCTCTCGACCTC
259 GGGATCCCTTCCTTGTCCTGAATCTTGGCCTTGACATTATCAATCGTATCAGAACTCTCCACCTC
** * * * * * * * *
66881537 CAGGGTGATGGTTTTACCGGTCAAGGTCTTCACGAATATCTGCATCCCTCCTCGAAGTCGGAGCA
324 CAACGTAATAGTTTTACCGGTCAAGGTCTTCACAAAAATCTGCATCCCACCCCGAAGACGAAGCA
66881602 CCAA-GTGGAGGGTAGACTCTTTCTGGATATTATAATCTGCAAGTGTCCTACCATCTTCGAGCTG
389 -CAAGGTGGAGGGTAGACTCTTTCTGGATATTATAATCTGCAAGTGTCCTACCATCTTCGAGCTG
66881666 TTTG
453 TTTG
*
66881670 CCAGCAAAAATCAACCTCTGCTGATCTGGTGGAATCCCTTCCTTGTCCTGGATCTTAGCTTTTAC
1 CCAGCAAAAATCAACCTCTGCTGATCTGGTGGAATCCCTTCCTTGTCCTGGATCTTAGCTTTCAC
* * * * * * * *
66881735 ATTGTCAATGGTGTCAGAACTCTCAACTTCCAAAGTAATAGTCTTTCCGGTGAGAGTCTTCACAA
66 ATTGTCGATAGTGTCAGAGCTCTCCACCTCCAAGGTGATAGTCTTTCCGGTAAGAGTCTTCACAA
* * * * *
66881800 AAATTTGCATGCCACCACGGAGACGTAACACCAAATGGAGGGTCGATTCCTTCTGAATGTTATAG
131 AAATCTGCATCCCACCACGAAGACGTAAAACCAAATGGAGGGTCGATTCCTTCTGGATGTTATAG
* *
66881865 TCCGCAAGAGTTCGGCCATCTTCAAGCTGCTTTCCAGCAAAAATCAACCTCTGCTGGTCCGGTGG
196 TCCGCAAGAGTTCGGCCATCTTCAAGCTGCTTTCCGGCAAAAATCAACCTCTGCTGGTCTGGTGG
* *
66881930 GATCCCTTCCTTATCCTGAATCTTGGCCTTAACATTATCAATCGTATCAGAACTCTCCACCTCCA
261 GATCCCTTCCTTGTCCTGAATCTTGGCCTTGACATTATCAATCGTATCAGAACTCTCCACCTCCA
* * * * * * *
66881995 ACGTAATAGTTTTTCCGGTGAGGGTTTTTACAAAAATCTGCATCCCACCCCTAAGACGAAGGACA
326 ACGTAATAGTTTTACCGGTCAAGGTCTTCACAAAAATCTGCATCCCACCCCGAAGACGAAGCACA
* * *
66882060 AGGTGGAGGGTAGACTCTTTCTGGATGTTGTAATCTGCAAGTGTCCTACCATCTTCGAGTTGTTT
391 AGGTGGAGGGTAGACTCTTTCTGGATATTATAATCTGCAAGTGTCCTACCATCTTCGAGCTGTTT
*
66882125 T
456 G
* * * * *
66882126 CCGGCAAAAATCAACCTCTGCTGATCTGGTGGAATCCCTTCCTTGTCTTGGATCTTGGCCTTGAC
1 CCAGCAAAAATCAACCTCTGCTGATCTGGTGGAATCCCTTCCTTGTCCTGGATCTTAGCTTTCAC
* * * * * * * * *
66882191 ATTATCGATAGTATCGGAGCTCTCCACCT-CAAGGGTGATGGTCTTACCAGTAAGGGTTTTTACA
66 ATTGTCGATAGTGTCAGAGCTCTCCACCTCCAA-GGTGATAGTCTTTCCGGTAAGAGTCTTCACA
* * * * * * * * *
66882255 AAGATCTGCATCCCACCCCTAAGACG-AAGGA-CAAGGTGGAGGGTAGACTCTTTCTGGATGTTG
130 AAAATCTGCATCCCACCACGAAGACGTAA-AACCAA-ATGGAGGGTCGATTCCTTCTGGATGTTA
* * *
66882318 TAATCCGCAAGAGTTCGGCCATCTTCAAGCTG-TTTACCGGCAAAGAT-AAGCCTCTGTTGGTCT
193 TAGTCCGCAAGAGTTCGGCCATCTTCAAGCTGCTTT-CCGGCAAAAATCAA-CCTCTGCTGGTCT
* * * * *
66882381 GGTGGGATCCCTTCCTTGTCTTGGATCTTGGCCTTGACATTATCAATTGTATCGGAACTTTCCAC
256 GGTGGGATCCCTTCCTTGTCCTGAATCTTGGCCTTGACATTATCAATCGTATCAGAACTCTCCAC
* ** * * * * * * * * **
66882446 CTCGAGGGTGATAGTCTTGCCAGT-AAGAGTTTTCACGAATATCTGCATGCCACCCCTTAGACGA
321 CTCCAACGTAATAGTTTTACCGGTCAAG-GTCTTCACAAAAATCTGCATCCCACCCCGAAGACGA
* * * * * * * * * ** *
66882510 AGGACTAGATGGAGGGTGGACTCCTTT-TGGATATTGTAGTCGGCAAGAGTTCGGCCATCCTCGA
385 AGCACAAGGTGGAGGGTAGACT-CTTTCTGGATATTATAATCTGCAAGTGTCCTACCATCTTCGA
* *
66882574 GTTGTTTT
449 GCTGTTTG
* * * * * * * * * * * *
66882582 CCGGCAAAGAT-AAGCCTTTGCTGGTCAGGAGGGATCCCTTCTTTGTCTTGGATTTTAGCCTTGA
1 CCAGCAAAAATCAA-CCTCTGCTGATCTGGTGGAATCCCTTCCTTGTCCTGGATCTTAGCTTTCA
* * * * * * * * * *
66882646 CATTATCGATAGTATCAGAACTTTCTACCT-CAAGGGTGATGGTCTTACCAGTAAGGGTTTTCAC
65 CATTGTCGATAGTGTCAGAGCTCTCCACCTCCAA-GGTGATAGTCTTTCCGGTAAGAGTCTTCAC
*
66882710 AAAGATCTGCATC
129 AAAAATCTGCATC
66882723 TGCTGTCAAC
Statistics
Matches: 885, Mismatches: 157, Indels: 22
0.83 0.15 0.02
Matches are distributed among these distances:
455 22 0.02
456 856 0.97
457 7 0.01
ACGTcount: A:0.23, C:0.25, G:0.22, T:0.30
Consensus pattern (456 bp):
CCAGCAAAAATCAACCTCTGCTGATCTGGTGGAATCCCTTCCTTGTCCTGGATCTTAGCTTTCAC
ATTGTCGATAGTGTCAGAGCTCTCCACCTCCAAGGTGATAGTCTTTCCGGTAAGAGTCTTCACAA
AAATCTGCATCCCACCACGAAGACGTAAAACCAAATGGAGGGTCGATTCCTTCTGGATGTTATAG
TCCGCAAGAGTTCGGCCATCTTCAAGCTGCTTTCCGGCAAAAATCAACCTCTGCTGGTCTGGTGG
GATCCCTTCCTTGTCCTGAATCTTGGCCTTGACATTATCAATCGTATCAGAACTCTCCACCTCCA
ACGTAATAGTTTTACCGGTCAAGGTCTTCACAAAAATCTGCATCCCACCCCGAAGACGAAGCACA
AGGTGGAGGGTAGACTCTTTCTGGATATTATAATCTGCAAGTGTCCTACCATCTTCGAGCTGTTT
G
Found at i:66882462 original size:684 final size:684
Alignment explanation
Indices: 66881127--66882676 Score: 1653
Period size: 684 Copynumber: 2.3 Consensus size: 684
66881117 CGATTAGAAA
* * * * * *
66881127 CCACCACGGAGGCGAAGGA-CAAGATGCAGTGTGGACTCCTTCTGGATATTGTAGTCGGCTAGAG
1 CCACCACGGAGACGAAGCACCAA-ATGGAGGGTCGACTCCTTCTGGATATTGTAGTCGGCAAGAG
* * * * * * *
66881191 TTCGACCATCCTCCAA-CTGCTTCCCAGCAAATATCAACCTCTGCTGGTCTGGTGGAATCCCCTC
65 TTCGGCCAT-CTTCAAGCTGCTTTCCAGCAAAAATCAACCTCTGCTGGTCAGGTGGGATCCCTTC
* * * * * * * ** * *
66881255 CTTGTCCTGAATCTTCGCTTTCACATTGTCGATCGTGTCTGAGCTCTCCACCTCCAGGGTGATTG
129 CTTGTCCTGAATCTTAGCCTTAACATTATCGATCGTATCAGAACTCTCCACCTCCAACGTAATAG
* * * * *
66881320 TTTTCCCGGTCAAGGTCTTCACGAATATCTGCATCCCTCCTCGAAGTCGTAAAACCAAATGCAGG
194 TTTTCCCGGTCAAGGTCTTCACAAAAATCTGCATCCCACCCCGAAGACGTAAAACCAAATGCAGG
* * * *
66881385 GTCGATTCCTTTTGGATGTTATAGTCTGCAAGTGTCCTCCCATCCTCAAGCTGCTTTCCGGCAAA
259 GTAGACTCCTTTTGGATGTTATAATCTGCAAGTGTCCTACCATCCTCAAGCTGCTTTCCGGCAAA
* * * *
66881450 AATCAACCTCTGCTGGTCTGGAGGAATCCCCTCCTTGTCCTGAATTTTCGCTTTGACATTGTCAA
324 AATCAACCTCTGCTGATCTGGAGGAATCCCCTCCTTGTCCTGAATCTTCGCCTTGACATTATCAA
* * * * * * * *
66881515 TGGTGTCCGAGCTCTCGACCTCCAGGGTGATGGTTTTACCGGTCAAGGTCTTCACGAATATCTGC
389 TAGTATCCGAGCTCTCCACCTCAAGGGTGATGGTCTTACCAGTCAAGGTCTTCACAAAGATCTGC
* * * * *
66881580 ATCCCTCCTCGAAGTCGGAGCACCAAGTGGAGGGTAGACTCTTTCTGGATATTATAATCTGCAAG
454 ATCCCACCCCGAAGACGAAGCACCAAGTGGAGGGTAGACTCTTTCTGGATATTATAATCCGCAAG
* * * *
66881645 TGTCCTACCATCTTCGAGCTGTTTGCCAGCAAAAATCAACCTCTGCTGATCTGGTGGAATCCCTT
519 AGTCCGACCATCTTCAAGCTGTTTACCAGCAAAAATCAACCTCTGCTGATCTGGTGGAATCCCTT
* * * * *
66881710 CCTTGTCCTGGATCTTAGCTTTTACATTGTCAATGGTGTCAGAACTCTCAACTTCCAAAGTAATA
584 CCTTGTCCTGGATCTTAGCCTTGACATTATCAATGGTATCAGAACTCTCAACCTCCAAAGTAATA
* * * *
66881775 GTCTTTCCGGTGAGAGTCTTCACAAAAATTTGCATG
649 GTCTTGCCAGTAAGAGTCTTCACAAAAATCTGCATG
* * * * *
66881811 CCACCACGGAGACGTAA-CACCAAATGGAGGGTCGATTCCTTCTGAATGTTATAGTCCGCAAGAG
1 CCACCACGGAGACG-AAGCACCAAATGGAGGGTCGACTCCTTCTGGATATTGTAGTCGGCAAGAG
*
66881875 TTCGGCCATCTTCAAGCTGCTTTCCAGCAAAAATCAACCTCTGCTGGTCCGGTGGGATCCCTTCC
65 TTCGGCCATCTTCAAGCTGCTTTCCAGCAAAAATCAACCTCTGCTGGTCAGGTGGGATCCCTTCC
* * *
66881940 TTATCCTGAATCTTGGCCTTAACATTATCAATCGTATCAGAACTCTCCACCTCCAACGTAATAGT
130 TTGTCCTGAATCTTAGCCTTAACATTATCGATCGTATCAGAACTCTCCACCTCCAACGTAATAGT
* * * * * * * * *
66882005 TTTTCCGGTGAGGGTTTTTACAAAAATCTGCATCCCACCCCTAAGACG-AAGGA-CAAGGTGGAG
195 TTTCCCGGTCAAGGTCTTCACAAAAATCTGCATCCCACCCCGAAGACGTAA-AACCAA-ATGCAG
* * * * *
66882068 GGTAGACT-CTTTCTGGATGTTGTAATCTGCAAGTGTCCTACCATCTTCGAGTTGTTTTCCGGCA
258 GGTAGACTCCTTT-TGGATGTTATAATCTGCAAGTGTCCTACCATCCTCAAGCTGCTTTCCGGCA
* * * * *
66882132 AAAATCAACCTCTGCTGATCTGGTGGAATCCCTTCCTTGTCTTGGATCTTGGCCTTGACATTATC
322 AAAATCAACCTCTGCTGATCTGGAGGAATCCCCTCCTTGTCCTGAATCTTCGCCTTGACATTATC
* * * *
66882197 GATAGTATCGGAGCTCTCCACCTCAAGGGTGATGGTCTTACCAGT-AAGGGTTTTTACAAAGATC
387 AATAGTATCCGAGCTCTCCACCTCAAGGGTGATGGTCTTACCAGTCAA-GGTCTTCACAAAGATC
* * * *
66882261 TGCATCCCACCCCTAAGACGAAGGA-CAAGGTGGAGGGTAGACTCTTTCTGGATGTTGTAATCCG
451 TGCATCCCACCCCGAAGACGAAGCACCAA-GTGGAGGGTAGACTCTTTCTGGATATTATAATCCG
* * * * * * *
66882325 CAAGAGTTCGGCCATCTTCAAGCTGTTTACCGGCAAAGAT-AAGCCTCTGTTGGTCTGGTGGGAT
515 CAAGAGTCCGACCATCTTCAAGCTGTTTACCAGCAAAAATCAA-CCTCTGCTGATCTGGTGGAAT
* * * * * * * **
66882389 CCCTTCCTTGTCTTGGATCTTGGCCTTGACATTATCAATTGTATCGGAACTTTCCACCTCGAGGG
579 CCCTTCCTTGTCCTGGATCTTAGCCTTGACATTATCAATGGTATCAGAACTCTCAACCTCCAAAG
* * * *
66882454 TGATAGTCTTGCCAGTAAGAGTTTTCACGAATATCTGCATG
644 TAATAGTCTTGCCAGTAAGAGTCTTCACAAAAATCTGCATG
* ** * * * * *
66882495 CCACCCCTTAGACGAAGGACTAGATGGAGGGTGGACTCCTTTTGGATATTGTAGTCGGCAAGAGT
1 CCACCACGGAGACGAAGCACCAAATGGAGGGTCGACTCCTTCTGGATATTGTAGTCGGCAAGAGT
* * * * * * * * *
66882560 TCGGCCATCCTCGAGTTGTTTTCCGGCAAAGAT-AAGCCTTTGCTGGTCAGGAGGGATCCCTTCT
66 TCGGCCATCTTCAAGCTGCTTTCCAGCAAAAATCAA-CCTCTGCTGGTCAGGTGGGATCCCTTCC
* * * * * * *
66882624 TTGTCTTGGATTTTAGCCTTGACATTATCGATAGTATCAGAACTTTCTACCTC
130 TTGTCCTGAATCTTAGCCTTAACATTATCGATCGTATCAGAACTCTCCACCTC
66882677 AAGGGTGATG
Statistics
Matches: 705, Mismatches: 150, Indels: 22
0.80 0.17 0.03
Matches are distributed among these distances:
683 25 0.04
684 675 0.96
685 5 0.01
ACGTcount: A:0.22, C:0.25, G:0.22, T:0.30
Consensus pattern (684 bp):
CCACCACGGAGACGAAGCACCAAATGGAGGGTCGACTCCTTCTGGATATTGTAGTCGGCAAGAGT
TCGGCCATCTTCAAGCTGCTTTCCAGCAAAAATCAACCTCTGCTGGTCAGGTGGGATCCCTTCCT
TGTCCTGAATCTTAGCCTTAACATTATCGATCGTATCAGAACTCTCCACCTCCAACGTAATAGTT
TTCCCGGTCAAGGTCTTCACAAAAATCTGCATCCCACCCCGAAGACGTAAAACCAAATGCAGGGT
AGACTCCTTTTGGATGTTATAATCTGCAAGTGTCCTACCATCCTCAAGCTGCTTTCCGGCAAAAA
TCAACCTCTGCTGATCTGGAGGAATCCCCTCCTTGTCCTGAATCTTCGCCTTGACATTATCAATA
GTATCCGAGCTCTCCACCTCAAGGGTGATGGTCTTACCAGTCAAGGTCTTCACAAAGATCTGCAT
CCCACCCCGAAGACGAAGCACCAAGTGGAGGGTAGACTCTTTCTGGATATTATAATCCGCAAGAG
TCCGACCATCTTCAAGCTGTTTACCAGCAAAAATCAACCTCTGCTGATCTGGTGGAATCCCTTCC
TTGTCCTGGATCTTAGCCTTGACATTATCAATGGTATCAGAACTCTCAACCTCCAAAGTAATAGT
CTTGCCAGTAAGAGTCTTCACAAAAATCTGCATG
Found at i:66882471 original size:228 final size:227
Alignment explanation
Indices: 66881139--66882722 Score: 1284
Period size: 228 Copynumber: 6.9 Consensus size: 227
66881129 ACCACGGAGG
* * * * * * * * * * *
66881139 CGAAGGACAAGATGCAGTGTGGACTCCTTCTGGATATTGTAGTCGGCTAGAGTTCGACCATCCTC
1 CGAAGGACAAGGTGGAGGGTAGACTCTTTCTGGATGTTGTAATCCGCAAGAGTTCGGCCAT-CTT
* * * * *
66881204 CAA-CTGCTTCCCAGCAAATATCAACCTCTGCTGGTCTGGTGGAATCCCCTCCTTGTCCTGAATC
65 CAAGCTG-TTTCCGGCAAAAATCAACCTCTGCTGGTCTGGTGGAATCCCTTCCTTGTCCTGGATC
* * * * * * * * * * * * *
66881268 TTCGCTTTCACATTGTCGATCGTGTCTGAGCTCTCCACCTCCAGGGTGATTGTTTTCCCGGTCAA
129 TTGGCCTTGACATTATCAATAGTATCAGAACTCTCCACCTCCAGGGTGATAGTCTTACCAGT-AA
* * * * * * *
66881333 -GGTCTTCACGAATATCTGCATCCCTCCTCGAAGT
193 GGGTTTTCACAAAAATCTGCATCCCACCCCTAAGA
* * * * * * * * * * **
66881367 CGTAA-AACCAA-ATGCAGGGTCGATTCCTTT-TGGATGTTATAGTCTGCAAGTGTCCTCCCATC
1 CG-AAGGA-CAAGGTGGAGGGTAGACT-CTTTCTGGATGTTGTAATCCGCAAGAGTTCGGCCATC
* * * *
66881429 CTCAAGCTGCTTTCCGGCAAAAATCAACCTCTGCTGGTCTGGAGGAATCCCCTCCTTGTCCTGAA
63 TTCAAGCTG-TTTCCGGCAAAAATCAACCTCTGCTGGTCTGGTGGAATCCCTTCCTTGTCCTGGA
* * * * * * * * * * * *
66881494 TTTTCGCTTTGACATTGTCAATGGTGTCCGAGCTCTCGACCTCCAGGGTGATGGTTTTACCGGTC
127 TCTTGGCCTTGACATTATCAATAGTATCAGAACTCTCCACCTCCAGGGTGATAGTCTTACCAGT-
* * * * * * *
66881559 AA-GGTCTTCACGAATATCTGCATCCCTCCTCGAAGT
191 AAGGGTTTTCACAAAAATCTGCATCCCACCCCTAAGA
* * * * * * * **
66881595 CGGAGCACCAA-GTGGAGGGTAGACTCTTTCTGGATATTATAATCTGCAAGTGTCCTACCATCTT
1 CGAAGGA-CAAGGTGGAGGGTAGACTCTTTCTGGATGTTGTAATCCGCAAGAGTTCGGCCATCTT
* * *
66881659 CGAGCTGTTTGCCAGCAAAAATCAACCTCTGCTGATCTGGTGGAATCCCTTCCTTGTCCTGGATC
65 CAAGCTGTTT-CCGGCAAAAATCAACCTCTGCTGGTCTGGTGGAATCCCTTCCTTGTCCTGGATC
* * * * * * * * ** * * * *
66881724 TTAGCTTTTACATTGTCAATGGTGTCAGAACTCTCAACTTCCAAAGTAATAGTCTTTCCGGTGAG
129 TTGGCCTTGACATTATCAATAGTATCAGAACTCTCCACCTCCAGGGTGATAGTCTTACCAGTAAG
* * * * * **
66881789 AGTCTTCACAAAAATTTGCATGCCACCACGGAGA
194 GGTTTTCACAAAAATCTGCATCCCACCCCTAAGA
* * * * * * * *
66881823 CGTAA-CACCAA-ATGGAGGGTCGATTCCTTCTGAATGTTATAGTCCGCAAGAGTTCGGCCATCT
1 CG-AAGGA-CAAGGTGGAGGGTAGACTCTTTCTGGATGTTGTAATCCGCAAGAGTTCGGCCATCT
* * * * *
66881886 TCAAGCTGCTTTCCAGCAAAAATCAACCTCTGCTGGTCCGGTGGGATCCCTTCCTTATCCTGAAT
64 TCAAGCTG-TTTCCGGCAAAAATCAACCTCTGCTGGTCTGGTGGAATCCCTTCCTTGTCCTGGAT
* * ** * * * * *
66881951 CTTGGCCTTAACATTATCAATCGTATCAGAACTCTCCACCTCCAACGTAATAGTTTTTCCGGTGA
128 CTTGGCCTTGACATTATCAATAGTATCAGAACTCTCCACCTCCAGGGTGATAGTCTTACCAGTAA
*
66882016 GGGTTTTTACAAAAATCTGCATCCCACCCCTAAGA
193 GGGTTTTCACAAAAATCTGCATCCCACCCCTAAGA
* * * **
66882051 CGAAGGACAAGGTGGAGGGTAGACTCTTTCTGGATGTTGTAATCTGCAAGTGTCCTACCATCTTC
1 CGAAGGACAAGGTGGAGGGTAGACTCTTTCTGGATGTTGTAATCCGCAAGAGTTCGGCCATCTTC
* * * *
66882116 GAGTTGTTTTCCGGCAAAAATCAACCTCTGCTGATCTGGTGGAATCCCTTCCTTGTCTTGGATCT
66 AAGCTG-TTTCCGGCAAAAATCAACCTCTGCTGGTCTGGTGGAATCCCTTCCTTGTCCTGGATCT
* * * * *
66882181 TGGCCTTGACATTATCGATAGTATCGGAGCTCTCCACCTCAAGGGTGATGGTCTTACCAGTAAGG
130 TGGCCTTGACATTATCAATAGTATCAGAACTCTCCACCTCCAGGGTGATAGTCTTACCAGTAAGG
* *
66882246 GTTTTTACAAAGATCTGCATCCCACCCCTAAGA
195 GTTTTCACAAAAATCTGCATCCCACCCCTAAGA
66882279 CGAAGGACAAGGTGGAGGGTAGACTCTTTCTGGATGTTGTAATCCGCAAGAGTTCGGCCATCTTC
1 CGAAGGACAAGGTGGAGGGTAGACTCTTTCTGGATGTTGTAATCCGCAAGAGTTCGGCCATCTTC
* * * *
66882344 AAGCTGTTTACCGGCAAAGAT-AAGCCTCTGTTGGTCTGGTGGGATCCCTTCCTTGTCTTGGATC
66 AAGCTGTTT-CCGGCAAAAATCAA-CCTCTGCTGGTCTGGTGGAATCCCTTCCTTGTCCTGGATC
* * * * *
66882408 TTGGCCTTGACATTATCAATTGTATCGGAACTTTCCACCTCGAGGGTGATAGTCTTGCCAGTAAG
129 TTGGCCTTGACATTATCAATAGTATCAGAACTCTCCACCTCCAGGGTGATAGTCTTACCAGTAAG
* * * * *
66882473 AGTTTTCACGAATATCTGCATGCCACCCCTTAGA
194 GGTTTTCACAAAAATCTGCATCCCACCCCTAAGA
* * * * * * *
66882507 CGAAGGACTAGATGGAGGGTGGACTCCTTT-TGGATATTGTAGTCGGCAAGAGTTCGGCCATCCT
1 CGAAGGACAAGGTGGAGGGTAGACT-CTTTCTGGATGTTGTAATCCGCAAGAGTTCGGCCATCTT
* * * * * * * * *
66882571 CGAGTTGTTTTCCGGCAAAGAT-AAGCCTTTGCTGGTCAGGAGGGATCCCTTCTTTGTCTTGGAT
65 CAAGCTG-TTTCCGGCAAAAATCAA-CCTCTGCTGGTCTGGTGGAATCCCTTCCTTGTCCTGGAT
* * * * * * *
66882635 TTTAGCCTTGACATTATCGATAGTATCAGAACTTTCTACCTCAAGGGTGATGGTCTTACCAGTAA
128 CTTGGCCTTGACATTATCAATAGTATCAGAACTCTCCACCTCCAGGGTGATAGTCTTACCAGTAA
*
66882700 GGGTTTTCACAAAGATCTGCATC
193 GGGTTTTCACAAAAATCTGCATC
66882723 TGCTGTCAAC
Statistics
Matches: 1148, Mismatches: 192, Indels: 32
0.84 0.14 0.02
Matches are distributed among these distances:
227 23 0.02
228 1106 0.96
229 19 0.02
ACGTcount: A:0.23, C:0.25, G:0.22, T:0.30
Consensus pattern (227 bp):
CGAAGGACAAGGTGGAGGGTAGACTCTTTCTGGATGTTGTAATCCGCAAGAGTTCGGCCATCTTC
AAGCTGTTTCCGGCAAAAATCAACCTCTGCTGGTCTGGTGGAATCCCTTCCTTGTCCTGGATCTT
GGCCTTGACATTATCAATAGTATCAGAACTCTCCACCTCCAGGGTGATAGTCTTACCAGTAAGGG
TTTTCACAAAAATCTGCATCCCACCCCTAAGA
Found at i:66885186 original size:9 final size:9
Alignment explanation
Indices: 66885172--66885206 Score: 52
Period size: 9 Copynumber: 3.8 Consensus size: 9
66885162 CATCCATGTG
66885172 TATTTTTAA
1 TATTTTTAA
66885181 TATTTTCTAA
1 TATTTT-TAA
*
66885191 TAATTTTAA
1 TATTTTTAA
66885200 TATTTTT
1 TATTTTT
66885207 TTAATTTTTA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
9 15 0.65
10 8 0.35
ACGTcount: A:0.31, C:0.03, G:0.00, T:0.66
Consensus pattern (9 bp):
TATTTTTAA
Found at i:66885213 original size:17 final size:19
Alignment explanation
Indices: 66885175--66885222 Score: 64
Period size: 17 Copynumber: 2.6 Consensus size: 19
66885165 CCATGTGTAT
66885175 TTTTAATATTTTCTAATAA
1 TTTTAATATTTTCTAATAA
*
66885194 TTTTAATATTTT-T-TTAA
1 TTTTAATATTTTCTAATAA
*
66885211 TTTTTATATTTT
1 TTTTAATATTTT
66885223 AAAAAATTAA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
17 14 0.52
18 1 0.04
19 12 0.44
ACGTcount: A:0.29, C:0.02, G:0.00, T:0.69
Consensus pattern (19 bp):
TTTTAATATTTTCTAATAA
Found at i:66885437 original size:2 final size:2
Alignment explanation
Indices: 66885430--66885470 Score: 82
Period size: 2 Copynumber: 20.5 Consensus size: 2
66885420 CTGCCCTTTT
66885430 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
66885471 TATTATTTAT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 39 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:66887932 original size:228 final size:228
Alignment explanation
Indices: 66887578--66888806 Score: 1045
Period size: 228 Copynumber: 5.4 Consensus size: 228
66887568 TAAAGTTCGA
* * *
66887578 CCATCCTCCAA-CTGCTTCCCAGCAAAGATCAACCTCTGCTGGTCTGGAGGAATCCCCTCCTTGT
1 CCATCCT-CAAGCTGCTTTCCAGCAAAAATCAACCTCTGCTGGTCTGGAGGAATACCCTCCTTGT
* * * * * * * * *
66887642 CCTGAATCTTAGCTTTCACATTGTCAATCGTGTCCGAGCTCTCCACCTCCAGGGTGATGGTTTTC
65 CCTGAATCTTGGCCTTAACATTATCAATGGTGTCCGAACTCTCCACCTCCAGTGTAATGGTTTTA
* * * *
66887707 CCAGTCAAAGTCTTCACGAATATCTGCATCCCTCCTCTAAGGCGCAAAACCAAATGCAGAGTGGA
130 CCAGTCAAAGTCTTCACGAATATCTGCATCCCTCCTCGAAGGCGCAGAACCAAATGCAGGGTTGA
* *
66887772 TTCCTTTTGGATGTTATAGTCCGCAAGCGTCCTC
195 CTCCTTTTGGATGTTATAATCCGCAAGCGTCCTC
* *
66887806 CCATCCTCAAGCTGCTTTCCGGCAAAAATCAACCTCTGCTGGTCTGGAGGAATCCCCTCCTTGTC
1 CCATCCTCAAGCTGCTTTCCAGCAAAAATCAACCTCTGCTGGTCTGGAGGAATACCCTCCTTGTC
* * * * * * *
66887871 CTGAATTTTCGCTTTAACATTGTCAATGGTGTCCGAGCTCTCGACCTCCAGTGTTATGGTTTTAC
66 CTGAATCTTGGCCTTAACATTATCAATGGTGTCCGAACTCTCCACCTCCAGTGTAATGGTTTTAC
* * *
66887936 CAGTCAAGGTCTTAACGAATATCTGCATCCCTCCTCGAAGGCGCAGAACCAAGTGCAGGGTTGAC
131 CAGTCAAAGTCTTCACGAATATCTGCATCCCTCCTCGAAGGCGCAGAACCAAATGCAGGGTTGAC
66888001 TCCTTTTGGATGTTATAATCCGCAAGCGTCCTC
196 TCCTTTTGGATGTTATAATCCGCAAGCGTCCTC
* * * * *
66888034 CCATCCTCGAGTTGCTTTCCAGCAAAAATCAACCTCTGCTGGTCAGGTGGGATACCCTCCTTGTC
1 CCATCCTCAAGCTGCTTTCCAGCAAAAATCAACCTCTGCTGGTCTGGAGGAATACCCTCCTTGTC
* * * * * * * * *
66888099 TTGGATCTTGGCCTTCACGTTATCAATTGTGTCTGAACTCTCCACCTCCAATGTAATAGTTTTTC
66 CTGAATCTTGGCCTTAACATTATCAATGGTGTCCGAACTCTCCACCTCCAGTGTAATGGTTTTAC
* * * * * * * * *
66888164 CAGTCAAAGTTTTCACAAAAATCTGCATTCCACCACGCAGTCGCAGCACCAAATGCAGGGTTGAC
131 CAGTCAAAGTCTTCACGAATATCTGCATCCCTCCTCGAAGGCGCAGAACCAAATGCAGGGTTGAC
* *
66888229 TCCTTTTGGATGTTATAATCCGCTAGTGTCCTC
196 TCCTTTTGGATGTTATAATCCGCAAGCGTCCTC
* * * * *
66888262 CCATCCTCGAGCTGCTTTCCGGCAAAAATCAGCCTCTGCTGATCTGGTGGAATACCCTCCTTGTC
1 CCATCCTCAAGCTGCTTTCCAGCAAAAATCAACCTCTGCTGGTCTGGAGGAATACCCTCCTTGTC
* * ** * *
66888327 CTGAATCTTGGCCTTAACATTATCAATGGTATCAGAACTCTCCACCTCCAAAGTGATGGTTTTTC
66 CTGAATCTTGGCCTTAACATTATCAATGGTGTCCGAACTCTCCACCTCCAGTGTAATGGTTTTAC
* * ** * * * * * * * * * * * * *
66888392 CGGTGAGGGTTTTTACAAATATCTGCATCCCACCCCTAAGACGAAGGA-CAAGGTGGAGCGTAGA
131 CAGTCAAAGTCTTCACGAATATCTGCATCCCTCCTCGAAGGCGCAGAACCAA-ATGCAGGGTTGA
* * * * **
66888456 CT-CTTTCTGGATGTTGTAATCAGCGAGGGTCCGG
195 CTCCTTT-TGGATGTTATAATCCGCAAGCGTCCTC
* * * * * *
66888490 CCATCTTCAAGTTG-TTTACCTGCAAAGAT-AAGCCTCTGTTGGTCTGGAGGGAT-CCCTTCCTT
1 CCATCCTCAAGCTGCTTT-CCAGCAAAAATCAA-CCTCTGCTGGTCTGGAGGAATACCC-TCCTT
* * * * * * * * * * *
66888552 GTCTTGGATCTTGGCCTTGACATTATCAATCGTATCAGAACTTTCCACCTCGAGGGTGATGGTCT
63 GTCCTGAATCTTGGCCTTAACATTATCAATGGTGTCCGAACTCTCCACCTCCAGTGTAATGGTTT
* * * * * * * ** * * * * ** *
66888617 TGCCAGT-AAGGGTTTTCACAAATATCTGCATGCCACCCCTTAGACGAAGGACTAGGTGGAGGGT
128 TACCAGTCAA-AGTCTTCACGAATATCTGCATCCCTCCTCGAAGGCGCAGAACCAAATGCAGGGT
* * * * * * **
66888681 GGACTCCTTTTGGATGTTGTAGTCGGCAAGAGTTCGG
192 TGACTCCTTTTGGATGTTATAATCCGCAAGCGTCCTC
* * * * * * *
66888718 CCATCCTCAAGTTGTTTTCCGGCAAAGAT-AAGCCTTTGTTGGTCTGGAGGAAT-CCCTTCTTTG
1 CCATCCTCAAGCTGCTTTCCAGCAAAAATCAA-CCTCTGCTGGTCTGGAGGAATACCC-TCCTTG
* * * *
66888781 TCTTGGATTTTGGCCTTGACATTATC
64 TCCTGAATCTTGGCCTTAACATTATC
66888807 GATAGTATCG
Statistics
Matches: 855, Mismatches: 136, Indels: 20
0.85 0.13 0.02
Matches are distributed among these distances:
227 18 0.02
228 829 0.97
229 8 0.01
ACGTcount: A:0.22, C:0.27, G:0.21, T:0.30
Consensus pattern (228 bp):
CCATCCTCAAGCTGCTTTCCAGCAAAAATCAACCTCTGCTGGTCTGGAGGAATACCCTCCTTGTC
CTGAATCTTGGCCTTAACATTATCAATGGTGTCCGAACTCTCCACCTCCAGTGTAATGGTTTTAC
CAGTCAAAGTCTTCACGAATATCTGCATCCCTCCTCGAAGGCGCAGAACCAAATGCAGGGTTGAC
TCCTTTTGGATGTTATAATCCGCAAGCGTCCTC
Found at i:66888634 original size:456 final size:455
Alignment explanation
Indices: 66887590--66888855 Score: 1238
Period size: 456 Copynumber: 2.8 Consensus size: 455
66887580 ATCCTCCAAC
* * * * *
66887590 TGCTTCCCAGCAAAGATCAACCTCTGCTGGTCTGGAGGAATCCCCTCCTTGTCCTGAATCTTAGC
1 TGCTTTCCAGCAAAGATCAACCTCTGCTGGTCTGGAGGGAT-CCCTCCTTGTCTTGGATCTTGGC
* * * * *
66887655 TTTCACATTGTCAATCGTGTCCGAGCTCTCCACCTCCAGGGTGATGGTTTTCCCAGTCAAAGTCT
65 CTTCACATTATCAATCGTGTCAGAACTCTCCACCTCCAGGGTGATGGTTTTCCCAGTCAAAGTTT
* * * * *
66887720 TCACGAATATCTGCATCCCTCCTCTAAGGCGCAAAACCAAATGCAGAGTGGATTCCTTTTGGATG
130 TCACAAATATCTGCATCCCACCACGAAGGCGCAAAACCAAATGCAGAGTGGACTCCTTTTGGATG
* *
66887785 TTATAGTCCGCAAGCGTCCTCCCATCCTCAAGCTGCTTTCCGGCAAAAATCAACCTCTGCTGGTC
195 TTATAATCCGCAAGCGTCCTCCCATCCTCAAGCTGCTTTCCGGCAAAAATCAACCTCTGCTGATC
* * * * * * * *
66887850 TGGAGGAATCCCCTCCTTGTCCTGAATTTTCGCTTTAACATTGTCAATGGTGTCCGAGCTCTCGA
260 TGGAGGAATACCCTCCTTGTCCTGAATCTTCGCCTTAACATTATCAATGGTATCAGAACTCTCCA
** * * * * * *
66887915 CCTCCAGTGTTATGGTTTTACCAGTCAAGGTCTTAACGAATATCTGCATCCCTCCTCGAAGGCGC
325 CCTCCAAAGTGATGGTTTTACCAGTCAAGGTCTTAACAAATATCTGCATCCCACCCCGAAGACGA
* * * * *
66887980 AGAACCAAGTGCAGGGTTGACTCCTTTTGGATGTTATAATCCGCAAGCGTCCTCCCATCCTCGAG
390 AGAACCAAGTGCAGCGTAGACTCCTTTTGGATGTTATAATCAGCAAGCGTCCGCCCATCCTCAAG
66888045 T
455 T
* * *
66888046 TGCTTTCCAGCAAAAATCAACCTCTGCTGGTCAGGTGGGATACCCTCCTTGTCTTGGATCTTGGC
1 TGCTTTCCAGCAAAGATCAACCTCTGCTGGTCTGGAGGGAT-CCCTCCTTGTCTTGGATCTTGGC
* * * ** * * *
66888111 CTTCACGTTATCAATTGTGTCTGAACTCTCCACCTCCAATGTAATAGTTTTTCCAGTCAAAGTTT
65 CTTCACATTATCAATCGTGTCAGAACTCTCCACCTCCAGGGTGATGGTTTTCCCAGTCAAAGTTT
* * * * ** * *
66888176 TCACAAAAATCTGCATTCCACCACGCAGTCGCAGCACCAAATGCAGGGTTGACTCCTTTTGGATG
130 TCACAAATATCTGCATCCCACCACGAAGGCGCAAAACCAAATGCAGAGTGGACTCCTTTTGGATG
* * * *
66888241 TTATAATCCGCTAGTGTCCTCCCATCCTCGAGCTGCTTTCCGGCAAAAATCAGCCTCTGCTGATC
195 TTATAATCCGCAAGCGTCCTCCCATCCTCAAGCTGCTTTCCGGCAAAAATCAACCTCTGCTGATC
* *
66888306 TGGTGGAATACCCTCCTTGTCCTGAATCTTGGCCTTAACATTATCAATGGTATCAGAACTCTCCA
260 TGGAGGAATACCCTCCTTGTCCTGAATCTTCGCCTTAACATTATCAATGGTATCAGAACTCTCCA
* * * * * * *
66888371 CCTCCAAAGTGATGGTTTTTCCGGTGAGGGTTTTTACAAATATCTGCATCCCACCCCTAAGACGA
325 CCTCCAAAGTGATGGTTTTACCAGTCAAGGTCTTAACAAATATCTGCATCCCACCCCGAAGACGA
* * * * * * *
66888436 AGGA-CAAGGTGGAGCGTAGACT-CTTTCTGGATGTTGTAATCAGCGAGGGTCCGGCCATCTTCA
390 AGAACCAA-GTGCAGCGTAGACTCCTTT-TGGATGTTATAATCAGCAAGCGTCCGCCCATCCTCA
66888499 AGT
453 AGT
* *
66888502 TG-TTTACCTGCAAAGAT-AAGCCTCTGTTGGTCTGGAGGGATCCCTTCCTTGTCTTGGATCTTG
1 TGCTTT-CCAGCAAAGATCAA-CCTCTGCTGGTCTGGAGGGATCCC-TCCTTGTCTTGGATCTTG
* * * * * * *
66888565 GCCTTGACATTATCAATCGTATCAGAACTTTCCACCTCGAGGGTGATGGTCTTGCCAGT-AAGGG
63 GCCTTCACATTATCAATCGTGTCAGAACTCTCCACCTCCAGGGTGATGGTTTTCCCAGTCAA-AG
* * ** * * * ** * *
66888629 TTTTCACAAATATCTGCATGCCACCCCTTAGACG-AAGGACTAGGTGGAGGGTGGACTCCTTTTG
127 TTTTCACAAATATCTGCATCCCACCACGAAGGCGCAA-AACCAAATGCAGAGTGGACTCCTTTTG
* * * * * ** * * * * *
66888693 GATGTTGTAGTCGGCAAGAGTTCGGCCATCCTCAAGTTGTTTTCCGGCAAAGAT-AAGCCTTTGT
191 GATGTTATAATCCGCAAGCGTCCTCCCATCCTCAAGCTGCTTTCCGGCAAAAATCAA-CCTCTGC
* * * * * * * * * * *
66888757 TGGTCTGGAGGAAT-CCCTTCTTTGTCTTGGATTTTGGCCTTGACATTATCGATAGTATCGGAGC
255 TGATCTGGAGGAATACCC-TCCTTGTCCTGAATCTTCGCCTTAACATTATCAATGGTATCAGAAC
* * * *
66888821 TTTCTACCT-CAAGGGTGATGGTCTTACCAGT-AAGG
319 TCTCCACCTCCAA-AGTGATGGTTTTACCAGTCAAGG
66888856 GTTTTCACAA
Statistics
Matches: 658, Mismatches: 142, Indels: 21
0.80 0.17 0.03
Matches are distributed among these distances:
455 28 0.04
456 630 0.96
ACGTcount: A:0.22, C:0.26, G:0.22, T:0.30
Consensus pattern (455 bp):
TGCTTTCCAGCAAAGATCAACCTCTGCTGGTCTGGAGGGATCCCTCCTTGTCTTGGATCTTGGCC
TTCACATTATCAATCGTGTCAGAACTCTCCACCTCCAGGGTGATGGTTTTCCCAGTCAAAGTTTT
CACAAATATCTGCATCCCACCACGAAGGCGCAAAACCAAATGCAGAGTGGACTCCTTTTGGATGT
TATAATCCGCAAGCGTCCTCCCATCCTCAAGCTGCTTTCCGGCAAAAATCAACCTCTGCTGATCT
GGAGGAATACCCTCCTTGTCCTGAATCTTCGCCTTAACATTATCAATGGTATCAGAACTCTCCAC
CTCCAAAGTGATGGTTTTACCAGTCAAGGTCTTAACAAATATCTGCATCCCACCCCGAAGACGAA
GAACCAAGTGCAGCGTAGACTCCTTTTGGATGTTATAATCAGCAAGCGTCCGCCCATCCTCAAGT
Found at i:66903580 original size:346 final size:350
Alignment explanation
Indices: 66902915--66903589 Score: 952
Period size: 345 Copynumber: 1.9 Consensus size: 350
66902905 TACTTATAAT
**
66902915 ACTGTCACAAACTCTTAGGCTTAATTCTAGGATTTTATTTTATTTTCTTTCTTTATTTAGACTCG
1 ACTGTCACAAACTCTTAGGCTTAATTCTAGGATTTTATTTTATTTTCTTTCCGTATTTAGAC-CG
*
66902980 TTGTGAATATAATATTAGATAAATCATGTTAGAGTCTATATTAATGTCTACTTCTTTACCTAGTT
65 TTGTGAATATAATATTAGATAAATCATGTTAGAGTCTATATTAATGTCTACTTCTCTA-CTAGTT
* ** * *
66903045 AAACTCTTGTAACTTGTATATATGTACAATGTTCCCATGAGTAAATCTATGAGGTTTTCTTTCAA
129 AAACTCTTGTAACTTGTATATATCTACAATACTCCCATGAGTAAATCTATAAGGTTTTCTCTCAA
* *
66903110 ATTCAACTTTCGTTACATGGAATCAGAGCTAAGGGATCGATTTTAGAGTACAAGTCTCATCAAAT
194 ATTCAACTTTCATTACATGGAATCAGAGCTAAGGGATCAATTTTAGAGTACAAGTCTCATCAAAT
* * * ** * *
66903175 TAGTCGCAAATAGTGAGTTTTTTAGGGTATTTTCGTTGACTACCAAGGGTTGTC-TTTTTTATCT
259 TAGTCGCAAATAGCGAATTCTAAAGGGTATTTTCGTTGACCACCAAGGGTTGCCTTTTTTTATCT
66903239 CACCACCAGCCTAGGGAGGTGCGCAAG
324 CACCACCAGCCTAGGGAGGTGCGCAAG
*
66903266 ACTGTTACAAACTCTTAGGCTTAATTCTAGGATTTTATTTTATTTTCTTTCCGTATTTAGA-C-T
1 ACTGTCACAAACTCTTAGGCTTAATTCTAGGATTTTATTTTATTTTCTTTCCGTATTTAGACCGT
* * * * * *
66903329 TGTGAATATAATATTAGATATATGATGTTCGGGTTTATATTAACT-TTTACTTCTCT-CTAGTTA
66 TGTGAATATAATATTAGATAAATCATGTTAGAGTCTATATTAA-TGTCTACTTCTCTACTAGTTA
*
66903392 AACTCTTGTAACTTGTATATATCTA-AATACTCCCATGTGTAAATCTATAAGGTTTTCTCTCAAA
130 AACTCTTGTAACTTGTATATATCTACAATACTCCCATGAGTAAATCTATAAGGTTTTCTCTCAAA
* * * * * * *
66903456 TTCTACTTTCATTACATGGTA-CTAGAGTTAAGGGATCAATTTTAGAGTCCAAGTTTCATTGAAT
195 TTCAACTTTCATTACATGGAATC-AGAGCTAAGGGATCAATTTTAGAGTACAAGTCTCA-TCAAA
66903520 TTA-TCGCAAAATAGCGAATTCTAAAGGGTATTTTCGTTGACCACCAAGGGTTGCCTTTTTTTAT
258 TTAGTCGC-AAATAGCGAATTCTAAAGGGTATTTTCGTTGACCACCAAGGGTTGCCTTTTTTTAT
66903584 CTCACC
322 CTCACC
66903590 GCTGGGCCAC
Statistics
Matches: 287, Mismatches: 32, Indels: 14
0.86 0.10 0.04
Matches are distributed among these distances:
344 1 0.00
345 87 0.30
346 77 0.27
347 14 0.05
348 48 0.17
349 2 0.01
351 58 0.20
ACGTcount: A:0.28, C:0.16, G:0.15, T:0.41
Consensus pattern (350 bp):
ACTGTCACAAACTCTTAGGCTTAATTCTAGGATTTTATTTTATTTTCTTTCCGTATTTAGACCGT
TGTGAATATAATATTAGATAAATCATGTTAGAGTCTATATTAATGTCTACTTCTCTACTAGTTAA
ACTCTTGTAACTTGTATATATCTACAATACTCCCATGAGTAAATCTATAAGGTTTTCTCTCAAAT
TCAACTTTCATTACATGGAATCAGAGCTAAGGGATCAATTTTAGAGTACAAGTCTCATCAAATTA
GTCGCAAATAGCGAATTCTAAAGGGTATTTTCGTTGACCACCAAGGGTTGCCTTTTTTTATCTCA
CCACCAGCCTAGGGAGGTGCGCAAG
Found at i:66909048 original size:15 final size:15
Alignment explanation
Indices: 66909028--66909058 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
66909018 CACTATCCTG
66909028 TTAGCATTTTATTGT
1 TTAGCATTTTATTGT
66909043 TTAGCATTTTATTGT
1 TTAGCATTTTATTGT
66909058 T
1 T
66909059 GAAAAATAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.19, C:0.06, G:0.13, T:0.61
Consensus pattern (15 bp):
TTAGCATTTTATTGT
Found at i:66914960 original size:105 final size:104
Alignment explanation
Indices: 66914768--66914964 Score: 313
Period size: 104 Copynumber: 1.9 Consensus size: 104
66914758 AAGTGTCTAA
* * *
66914768 CTGAGTTGGTGTCACGAGTCAACTCGAAACTAACTCAGTTGTAAAATTACTAAAACACCCTTACT
1 CTGAGTTGGTCTCACAAGTCAACTCGAAACTAACTCAATTGTAAAATTACTAAAACACCCTTACT
*
66914833 TTAAAGGGTAATTAATATTATTATGAGAGTATTTTCATC
66 TTAAAGGATAATTAATATTATTATGAGAGTATTTTCATC
* * *
66914872 CTGAGTTGGTCTCACAAGTCAACTCGAAATTAAGTCAATTGTGAAATTACTAAAAACACCCTTAC
1 CTGAGTTGGTCTCACAAGTCAACTCGAAACTAACTCAATTGTAAAATTACT-AAAACACCCTTAC
*
66914937 TTTAAAGGATAATTAATTTTATTATGAG
65 TTTAAAGGATAATTAATATTATTATGAG
66914965 GACATTTTAA
Statistics
Matches: 84, Mismatches: 8, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
104 45 0.54
105 39 0.46
ACGTcount: A:0.36, C:0.16, G:0.15, T:0.34
Consensus pattern (104 bp):
CTGAGTTGGTCTCACAAGTCAACTCGAAACTAACTCAATTGTAAAATTACTAAAACACCCTTACT
TTAAAGGATAATTAATATTATTATGAGAGTATTTTCATC
Found at i:66915467 original size:17 final size:16
Alignment explanation
Indices: 66915435--66915465 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
66915425 TGTAATGTAT
66915435 TTTTTTTAAATATTTA
1 TTTTTTTAAATATTTA
*
66915451 TTTTTTTCAATATTT
1 TTTTTTTAAATATTT
66915466 TACCACATCC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.26, C:0.03, G:0.00, T:0.71
Consensus pattern (16 bp):
TTTTTTTAAATATTTA
Found at i:66917339 original size:9 final size:9
Alignment explanation
Indices: 66917321--66917357 Score: 56
Period size: 9 Copynumber: 4.1 Consensus size: 9
66917311 TATAGTTTGA
*
66917321 TATTCAAAT
1 TATTCGAAT
66917330 TATTCGAAT
1 TATTCGAAT
*
66917339 TATTCGAGT
1 TATTCGAAT
66917348 TATTCGAAT
1 TATTCGAAT
66917357 T
1 T
66917358 CGAAAACTTA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
9 25 1.00
ACGTcount: A:0.32, C:0.11, G:0.11, T:0.46
Consensus pattern (9 bp):
TATTCGAAT
Found at i:66917428 original size:9 final size:9
Alignment explanation
Indices: 66917411--66917441 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
66917401 TCGAGTTGAT
66917411 TCGAATAAC
1 TCGAATAAC
*
66917420 TCGATTAAC
1 TCGAATAAC
66917429 TCGAATAAC
1 TCGAATAAC
66917438 TCGA
1 TCGA
66917442 TTCGTTTAAC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.39, C:0.23, G:0.13, T:0.26
Consensus pattern (9 bp):
TCGAATAAC
Found at i:66924373 original size:36 final size:36
Alignment explanation
Indices: 66924304--66924389 Score: 118
Period size: 36 Copynumber: 2.4 Consensus size: 36
66924294 CTACCTTCAT
** *
66924304 CCGATTTGCTTCCTTGTTTCTTTACTTTTCTTTTCTG
1 CCGATTTGC-TCCCAGTTTATTTACTTTTCTTTTCTG
*
66924341 CCGATTTGCTCCCAGTTTATTTTCTTTTCTTTTCTG
1 CCGATTTGCTCCCAGTTTATTTACTTTTCTTTTCTG
*
66924377 CCAATTTGCTCCC
1 CCGATTTGCTCCC
66924390 CCGTTTCTTT
Statistics
Matches: 44, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
36 35 0.80
37 9 0.20
ACGTcount: A:0.08, C:0.28, G:0.10, T:0.53
Consensus pattern (36 bp):
CCGATTTGCTCCCAGTTTATTTACTTTTCTTTTCTG
Found at i:66927553 original size:18 final size:17
Alignment explanation
Indices: 66927527--66927576 Score: 59
Period size: 18 Copynumber: 3.0 Consensus size: 17
66927517 ATTAAGAATT
*
66927527 TTATGAAATTATATATTA
1 TTATTAAATTATAT-TTA
66927545 TTATTAAATTATATTTA
1 TTATTAAATTATATTTA
*
66927562 ATATT-AATTAT-TTTA
1 TTATTAAATTATATTTA
66927577 AATTGTATAA
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
15 4 0.13
16 6 0.20
17 7 0.23
18 13 0.43
ACGTcount: A:0.42, C:0.00, G:0.02, T:0.56
Consensus pattern (17 bp):
TTATTAAATTATATTTA
Found at i:66927617 original size:47 final size:45
Alignment explanation
Indices: 66927566--66927733 Score: 130
Period size: 47 Copynumber: 3.6 Consensus size: 45
66927556 TATTTAATAT
*
66927566 TAATTATTTTAAATTGTATAAATTCATATAAGAAAAATTATTATCAA
1 TAATTATTTTAAATT-TATAAATTCATATAAGAAAATTTATTAT-AA
* * **
66927613 TAATT-TTATGAAA-TTATATATT-AT-T-ATTAAATTATATGTAATAA
1 TAATTATT-TTAAATTTATAAATTCATATAAGAAAATT-TAT-T-ATAA
* * *
66927657 TAATTATTTTAAATTATACAAATTCATATAAGATAATTTATTAGTTA
1 TAATTATTTTAAATT-TATAAATTCATATAAGAAAATTTATTA-TAA
* *
66927704 TAATTATTTTAAATTTTATTAAGTCATATA
1 TAATTATTTTAAA-TTTATAAATTCATATA
66927734 TTTTAATTAA
Statistics
Matches: 94, Mismatches: 15, Indels: 24
0.71 0.11 0.18
Matches are distributed among these distances:
42 5 0.05
43 4 0.04
44 14 0.15
45 12 0.13
46 10 0.11
47 38 0.40
48 6 0.06
49 5 0.05
ACGTcount: A:0.45, C:0.03, G:0.04, T:0.48
Consensus pattern (45 bp):
TAATTATTTTAAATTTATAAATTCATATAAGAAAATTTATTATAA
Found at i:66927634 original size:91 final size:91
Alignment explanation
Indices: 66927492--66927699 Score: 326
Period size: 91 Copynumber: 2.3 Consensus size: 91
66927482 TTGATTTTAG
* *
66927492 TAAATTCATATAAGAACATTTTATTATTAAGAATTTTATGAAATTATATATTATTATTAAATTAT
1 TAAATTCATATAAGAA-AATTTATTATCAAGAATTTTATGAAATTATATATTATTATTAAATTAT
* * *
66927557 ATTTAATATTAATTATTTTAAATTGTA
65 ATGTAATAATAATTATTTTAAATTATA
* *
66927584 TAAATTCATATAAGAAAAATTATTATCAATAATTTTATGAAATTATATATTATTATTAAATTATA
1 TAAATTCATATAAGAAAATTTATTATCAAGAATTTTATGAAATTATATATTATTATTAAATTATA
66927649 TGTAATAATAATTATTTTAAATTATA
66 TGTAATAATAATTATTTTAAATTATA
* *
66927675 CAAATTCATATAAGATAATTTATTA
1 TAAATTCATATAAGAAAATTTATTA
66927700 GTTATAATTA
Statistics
Matches: 106, Mismatches: 10, Indels: 1
0.91 0.09 0.01
Matches are distributed among these distances:
91 90 0.85
92 16 0.15
ACGTcount: A:0.46, C:0.03, G:0.04, T:0.47
Consensus pattern (91 bp):
TAAATTCATATAAGAAAATTTATTATCAAGAATTTTATGAAATTATATATTATTATTAAATTATA
TGTAATAATAATTATTTTAAATTATA
Found at i:66927660 original size:44 final size:43
Alignment explanation
Indices: 66927513--66927674 Score: 125
Period size: 44 Copynumber: 3.6 Consensus size: 43
66927503 AAGAACATTT
* *
66927513 TATTATTAAGAATT-TTATGAAATTATATATTATTATTAAATTA
1 TATTAATAATAATTATT-TGAAATTATATATTATTATTAAATTA
* * * * *
66927556 TATTTAATATTAATTATTTTAAATTGTATA-AATTCATATAAGA-AA
1 TA-TTAATAATAATTATTTGAAATTATATATTATT-AT-TAA-ATTA
*
66927601 AATTATTATCAATAATT-TTATGAAATTATATATTATTATTAAATTA
1 TATTA--AT-AATAATTATT-TGAAATTATATATTATTATTAAATTA
*
66927647 TATGTAATAATAATTATTTTAAATTATA
1 TAT-TAATAATAATTATTTGAAATTATA
66927675 CAAATTCATA
Statistics
Matches: 91, Mismatches: 15, Indels: 25
0.69 0.11 0.19
Matches are distributed among these distances:
43 5 0.05
44 40 0.44
45 12 0.13
46 11 0.12
47 20 0.22
48 3 0.03
ACGTcount: A:0.46, C:0.01, G:0.04, T:0.49
Consensus pattern (43 bp):
TATTAATAATAATTATTTGAAATTATATATTATTATTAAATTA
Found at i:66927674 original size:26 final size:28
Alignment explanation
Indices: 66927512--66927588 Score: 61
Period size: 28 Copynumber: 2.8 Consensus size: 28
66927502 TAAGAACATT
* *
66927512 TTATTATTAAGAATTTTATGAAATTATATA
1 TTATTATT-A-AATTATATGAAATAATATA
** *
66927542 TTATTATTAAATTATATTTAATATTA-A
1 TTATTATTAAATTATATGAAATAATATA
*
66927569 TTATT-TTAAATTGTAT-AAAT
1 TTATTATTAAATTATATGAAAT
66927589 TCATATAAGA
Statistics
Matches: 40, Mismatches: 7, Indels: 5
0.77 0.13 0.10
Matches are distributed among these distances:
25 3 0.08
26 10 0.25
27 6 0.15
28 12 0.30
29 1 0.03
30 8 0.20
ACGTcount: A:0.43, C:0.00, G:0.04, T:0.53
Consensus pattern (28 bp):
TTATTATTAAATTATATGAAATAATATA
Found at i:66927881 original size:25 final size:26
Alignment explanation
Indices: 66927849--66927903 Score: 71
Period size: 24 Copynumber: 2.2 Consensus size: 26
66927839 TTATTAAATT
*
66927849 ATATATTTTAATTATAA-TATATTTA
1 ATATATTTTAATAATAATTATATTTA
*
66927874 ATATA-TTTAATAATAATTATGTTTA
1 ATATATTTTAATAATAATTATATTTA
66927899 A-ATAT
1 ATATAT
66927904 GATTAAATTA
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
24 13 0.50
25 13 0.50
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.53
Consensus pattern (26 bp):
ATATATTTTAATAATAATTATATTTA
Done.