Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr09 ID=Chr09-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 70713020
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 1142373 characters in sequence are not A, C, G, or T
File 215 of 226
Found at i:67461360 original size:16 final size:17
Alignment explanation
Indices: 67461335--67461367 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
67461325 AAAAATATTA
*
67461335 TAAAATTATT-AAAATT
1 TAAAAATATTGAAAATT
67461351 TAAAAATATTGAAAATT
1 TAAAAATATTGAAAATT
67461368 AATTAATTTC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 9 0.60
17 6 0.40
ACGTcount: A:0.58, C:0.00, G:0.03, T:0.39
Consensus pattern (17 bp):
TAAAAATATTGAAAATT
Found at i:67466943 original size:16 final size:16
Alignment explanation
Indices: 67466919--67466960 Score: 66
Period size: 16 Copynumber: 2.6 Consensus size: 16
67466909 TTTGGTTCGC
* *
67466919 TGTATTGGATTAGAGG
1 TGTAATGGAATAGAGG
67466935 TGTAATGGAATAGAGG
1 TGTAATGGAATAGAGG
67466951 TGTAATGGAA
1 TGTAATGGAA
67466961 AAGCTGTGTA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 24 1.00
ACGTcount: A:0.33, C:0.00, G:0.36, T:0.31
Consensus pattern (16 bp):
TGTAATGGAATAGAGG
Found at i:67467326 original size:14 final size:15
Alignment explanation
Indices: 67467194--67467328 Score: 61
Period size: 15 Copynumber: 8.9 Consensus size: 15
67467184 TTTAAACATA
*
67467194 ATTATTATTAAATAT
1 ATTATAATTAAATAT
*
67467209 ATTTTAATTAAA-AT
1 ATTATAATTAAATAT
*
67467223 A-TATAATTTAATAT
1 ATTATAATTAAATAT
*
67467237 GAATTTACTCAAATCATAATAT
1 --A-TTA-T--AATTA-AATAT
* *
67467259 ATGATACTGTAAA-AT
1 ATTATAAT-TAAATAT
67467274 A-TA-AATTAACATA-
1 ATTATAATTAA-ATAT
*
67467287 ATTATTATTAAATAT
1 ATTATAATTAAATAT
67467302 ATTATAATTAAA-AT
1 ATTATAATTAAATAT
*
67467316 A-TATAATTTAATA
1 ATTATAATTAAATA
67467329 AAATTCTTAA
Statistics
Matches: 90, Mismatches: 14, Indels: 33
0.66 0.10 0.24
Matches are distributed among these distances:
12 3 0.03
13 21 0.23
14 16 0.18
15 29 0.32
16 5 0.06
17 1 0.01
18 3 0.03
19 3 0.03
20 1 0.01
21 3 0.03
22 5 0.06
ACGTcount: A:0.50, C:0.04, G:0.02, T:0.44
Consensus pattern (15 bp):
ATTATAATTAAATAT
Found at i:67467343 original size:44 final size:43
Alignment explanation
Indices: 67467254--67467344 Score: 103
Period size: 44 Copynumber: 2.1 Consensus size: 43
67467244 CTCAAATCAT
* * *
67467254 AATATATGATACTGTAAAATATAAATTAACATAATTATTATTA
1 AATATATGATAATGTAAAATATAAATTAACAAAATTATTAATA
* * *
67467297 AATATATTATAAT-TAAAATATATAATTTAATAAAATTCTTAATA
1 AATATATGATAATGTAAAATATA-AA-TTAACAAAATTATTAATA
67467341 AATA
1 AATA
67467345 AAATTCTTCT
Statistics
Matches: 40, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
42 9 0.22
43 13 0.32
44 18 0.45
ACGTcount: A:0.54, C:0.03, G:0.02, T:0.41
Consensus pattern (43 bp):
AATATATGATAATGTAAAATATAAATTAACAAAATTATTAATA
Found at i:67467433 original size:15 final size:16
Alignment explanation
Indices: 67467413--67467448 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 16
67467403 AATAATTAAT
67467413 ATTAA-ATATGATTTA
1 ATTAATATATGATTTA
67467428 ATTAAATATATGATTTA
1 ATT-AATATATGATTTA
67467445 ATTA
1 ATTA
67467449 TAACTAATAT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
15 3 0.16
16 3 0.16
17 13 0.68
ACGTcount: A:0.47, C:0.00, G:0.06, T:0.47
Consensus pattern (16 bp):
ATTAATATATGATTTA
Found at i:67467438 original size:17 final size:20
Alignment explanation
Indices: 67467417--67467462 Score: 71
Period size: 17 Copynumber: 2.5 Consensus size: 20
67467407 ATTAATATTA
67467417 AATATGATTTAATTA-AA-T
1 AATATGATTTAATTATAACT
67467435 -ATATGATTTAATTATAACT
1 AATATGATTTAATTATAACT
67467454 AATATGATT
1 AATATGATT
67467463 ATAGTTTATG
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
17 14 0.56
18 2 0.08
19 1 0.04
20 8 0.32
ACGTcount: A:0.46, C:0.02, G:0.07, T:0.46
Consensus pattern (20 bp):
AATATGATTTAATTATAACT
Found at i:67467579 original size:93 final size:92
Alignment explanation
Indices: 67467469--67467663 Score: 286
Period size: 93 Copynumber: 2.1 Consensus size: 92
67467459 GATTATAGTT
* * *
67467469 TATGAATTTGTATAATTTAAAATAA-TAATTATTACATATAATT-TAATAATAATATATAATTTC
1 TATGAATTTATACAATTTAAAATAATTAA-TATTAAATATAATTAT-ATAATAATATATAATTTC
* *
67467532 ATAAAATTCTTGATAATAAAAATTTTCTTA
64 ATAAAATTCTTAATAAT-AAAATGTTCTTA
* *
67467562 TATGAATTTATACAATTTAAAATAATTAATATTAAATATAATTATATAGTGATATATAATTTCAT
1 TATGAATTTATACAATTTAAAATAATTAATATTAAATATAATTATATAATAATATATAATTTCAT
67467627 AAAATTCTTAATAATAAAATGTTCTTA
66 AAAATTCTTAATAATAAAATGTTCTTA
67467654 TATGAATTTA
1 TATGAATTTA
67467664 CTAAAATCAA
Statistics
Matches: 93, Mismatches: 7, Indels: 5
0.89 0.07 0.05
Matches are distributed among these distances:
92 21 0.23
93 68 0.73
94 4 0.04
ACGTcount: A:0.47, C:0.04, G:0.04, T:0.45
Consensus pattern (92 bp):
TATGAATTTATACAATTTAAAATAATTAATATTAAATATAATTATATAATAATATATAATTTCAT
AAAATTCTTAATAATAAAATGTTCTTA
Found at i:67469298 original size:11 final size:11
Alignment explanation
Indices: 67469284--67469310 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
67469274 AAAAATCAAT
67469284 ACAAAAGTTTC
1 ACAAAAGTTTC
67469295 ACAAAAGTTTC
1 ACAAAAGTTTC
67469306 ACAAA
1 ACAAA
67469311 CTAATTTCTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.52, C:0.19, G:0.07, T:0.22
Consensus pattern (11 bp):
ACAAAAGTTTC
Found at i:67471209 original size:15 final size:15
Alignment explanation
Indices: 67471189--67471219 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
67471179 ATATTATGTA
67471189 TAATTGAGGTAAAAT
1 TAATTGAGGTAAAAT
67471204 TAATTGAGGTAAAAT
1 TAATTGAGGTAAAAT
67471219 T
1 T
67471220 TGAAGGTTGG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.45, C:0.00, G:0.19, T:0.35
Consensus pattern (15 bp):
TAATTGAGGTAAAAT
Found at i:67483869 original size:18 final size:19
Alignment explanation
Indices: 67483846--67483882 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
67483836 CATTGGCTAA
67483846 GCTACTT-AAGAAAAATGT
1 GCTACTTAAAGAAAAATGT
67483864 GCTACTTAAAGAAAAATGT
1 GCTACTTAAAGAAAAATGT
67483883 TAAGTTTGAG
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 7 0.39
19 11 0.61
ACGTcount: A:0.46, C:0.11, G:0.16, T:0.27
Consensus pattern (19 bp):
GCTACTTAAAGAAAAATGT
Found at i:67486797 original size:10 final size:9
Alignment explanation
Indices: 67486784--67486849 Score: 60
Period size: 10 Copynumber: 6.8 Consensus size: 9
67486774 TTATTAATTA
67486784 TTTTCTTTT
1 TTTTCTTTT
67486793 CTTTTCCTTTT
1 -TTTT-CTTTT
67486804 TCTTTCTTTT
1 T-TTTCTTTT
*
67486814 TTTTGTTTT
1 TTTTCTTTT
*
67486823 TTGTTTTTTGT
1 TT-TTCTTT-T
*
67486834 TTTTGTTTT
1 TTTTCTTTT
67486843 TTTTCTT
1 TTTTCTT
67486850 CCTCTTTTTT
Statistics
Matches: 48, Mismatches: 4, Indels: 9
0.79 0.07 0.15
Matches are distributed among these distances:
9 16 0.33
10 21 0.44
11 11 0.23
ACGTcount: A:0.00, C:0.11, G:0.06, T:0.83
Consensus pattern (9 bp):
TTTTCTTTT
Found at i:67486823 original size:20 final size:20
Alignment explanation
Indices: 67486785--67486844 Score: 68
Period size: 20 Copynumber: 3.0 Consensus size: 20
67486775 TATTAATTAT
**
67486785 TTTCTTTTCTTTTCCTTTTTC
1 TTTCTTTT-TTTTGTTTTTTC
*
67486806 TTTCTTTTTTTTGTTTTTTG
1 TTTCTTTTTTTTGTTTTTTC
67486826 TTT-TTTGTTTTTGTTTTTT
1 TTTCTTT-TTTTTGTTTTTT
67486845 TTCTTCCTCT
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
19 3 0.09
20 24 0.69
21 8 0.23
ACGTcount: A:0.00, C:0.10, G:0.07, T:0.83
Consensus pattern (20 bp):
TTTCTTTTTTTTGTTTTTTC
Found at i:67486829 original size:6 final size:7
Alignment explanation
Indices: 67486812--67486844 Score: 59
Period size: 7 Copynumber: 4.9 Consensus size: 7
67486802 TTTCTTTCTT
67486812 TTTTTTG
1 TTTTTTG
67486819 TTTTTTG
1 TTTTTTG
67486826 TTTTTTG
1 TTTTTTG
67486833 -TTTTTG
1 TTTTTTG
67486839 TTTTTT
1 TTTTTT
67486845 TTCTTCCTCT
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
6 6 0.24
7 19 0.76
ACGTcount: A:0.00, C:0.00, G:0.12, T:0.88
Consensus pattern (7 bp):
TTTTTTG
Found at i:67486829 original size:13 final size:14
Alignment explanation
Indices: 67486812--67486844 Score: 59
Period size: 13 Copynumber: 2.4 Consensus size: 14
67486802 TTTCTTTCTT
67486812 TTTTTTGTTTTTTG
1 TTTTTTGTTTTTTG
67486826 TTTTTTG-TTTTTG
1 TTTTTTGTTTTTTG
67486839 TTTTTT
1 TTTTTT
67486845 TTCTTCCTCT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 12 0.63
14 7 0.37
ACGTcount: A:0.00, C:0.00, G:0.12, T:0.88
Consensus pattern (14 bp):
TTTTTTGTTTTTTG
Found at i:67486845 original size:14 final size:13
Alignment explanation
Indices: 67486800--67486845 Score: 56
Period size: 14 Copynumber: 3.4 Consensus size: 13
67486790 TTTCTTTTCC
* *
67486800 TTTTTCTTTCTTT
1 TTTTTGTTTTTTT
67486813 TTTTTGTTTTTTGT
1 TTTTTGTTTTTT-T
67486827 TTTTTGTTTTTGTT
1 TTTTTGTTTTT-TT
67486841 TTTTT
1 TTTTT
67486846 TCTTCCTCTT
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
13 10 0.34
14 18 0.62
15 1 0.03
ACGTcount: A:0.00, C:0.04, G:0.09, T:0.87
Consensus pattern (13 bp):
TTTTTGTTTTTTT
Found at i:67487285 original size:23 final size:23
Alignment explanation
Indices: 67487232--67487285 Score: 56
Period size: 23 Copynumber: 2.4 Consensus size: 23
67487222 GTCTACCTGC
* **
67487232 AAAAT-AAAATAAAATAGAAGGA
1 AAAATAAAAATAAAATAAAACAA
* *
67487254 AGAAGAAAAATAAAATAAAACAA
1 AAAATAAAAATAAAATAAAACAA
67487277 AAAATAAAA
1 AAAATAAAA
67487286 TGTGCAATTT
Statistics
Matches: 24, Mismatches: 7, Indels: 1
0.75 0.22 0.03
Matches are distributed among these distances:
22 3 0.12
23 21 0.88
ACGTcount: A:0.78, C:0.02, G:0.09, T:0.11
Consensus pattern (23 bp):
AAAATAAAAATAAAATAAAACAA
Found at i:67500590 original size:9 final size:9
Alignment explanation
Indices: 67500561--67500590 Score: 51
Period size: 9 Copynumber: 3.3 Consensus size: 9
67500551 TGAATTTTAC
67500561 AATTCGAAT
1 AATTCGAAT
*
67500570 AACTCGAAT
1 AATTCGAAT
67500579 AATTCGAAT
1 AATTCGAAT
67500588 AAT
1 AAT
67500591 AGATTTGTGT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.47, C:0.13, G:0.10, T:0.30
Consensus pattern (9 bp):
AATTCGAAT
Found at i:67500701 original size:19 final size:21
Alignment explanation
Indices: 67500664--67500717 Score: 69
Period size: 20 Copynumber: 2.7 Consensus size: 21
67500654 CAAAAATTAC
*
67500664 CAAAAATTTAAAATAATTT-T
1 CAAAAATTCAAAATAATTTAT
67500684 CAAAAATTCAAAAT-ATTTAT
1 CAAAAATTCAAAATAATTTAT
67500704 -AAAAATTCTAAAAT
1 CAAAAATTC-AAAAT
67500718 TTATAGTTTT
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
19 12 0.39
20 19 0.61
ACGTcount: A:0.57, C:0.07, G:0.00, T:0.35
Consensus pattern (21 bp):
CAAAAATTCAAAATAATTTAT
Found at i:67500719 original size:18 final size:19
Alignment explanation
Indices: 67500665--67500722 Score: 66
Period size: 19 Copynumber: 3.1 Consensus size: 19
67500655 AAAAATTACC
*
67500665 AAAAATTTAAAATAATTT-T
1 AAAAATTCAAAAT-ATTTAT
67500684 CAAAAATTCAAAATATTTAT
1 -AAAAATTCAAAATATTTAT
*
67500704 AAAAATTCTAAA-ATTTAT
1 AAAAATTCAAAATATTTAT
67500722 A
1 A
67500723 GTTTTAAAAA
Statistics
Matches: 35, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
18 7 0.20
19 15 0.43
20 13 0.37
ACGTcount: A:0.57, C:0.05, G:0.00, T:0.38
Consensus pattern (19 bp):
AAAAATTCAAAATATTTAT
Found at i:67502408 original size:17 final size:18
Alignment explanation
Indices: 67502372--67502404 Score: 52
Period size: 16 Copynumber: 1.9 Consensus size: 18
67502362 TTAAGCGTCT
67502372 TTTTTCAAAAGATATTTA
1 TTTTTCAAAAGATATTTA
67502390 TTTTT-AAAA-ATATTT
1 TTTTTCAAAAGATATTT
67502405 TATTATATTA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
17 4 0.27
18 5 0.33
ACGTcount: A:0.39, C:0.03, G:0.03, T:0.55
Consensus pattern (18 bp):
TTTTTCAAAAGATATTTA
Found at i:67504421 original size:2 final size:2
Alignment explanation
Indices: 67504414--67504438 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
67504404 TAATTTTATG
67504414 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
67504439 CTTATCCCGA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:67504696 original size:27 final size:28
Alignment explanation
Indices: 67504645--67504701 Score: 71
Period size: 27 Copynumber: 2.1 Consensus size: 28
67504635 AATATTTTCA
* *
67504645 AATTTTTCAAAAAAAAATATTTAAACAT
1 AATTCTTCAAAAAAAAATATCTAAACAT
* *
67504673 AATTCTTC-AAAAAAGATATCTAAATAT
1 AATTCTTCAAAAAAAAATATCTAAACAT
67504700 AA
1 AA
67504702 AAAAAAAAAA
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
27 18 0.72
28 7 0.28
ACGTcount: A:0.56, C:0.09, G:0.02, T:0.33
Consensus pattern (28 bp):
AATTCTTCAAAAAAAAATATCTAAACAT
Found at i:67505202 original size:9 final size:10
Alignment explanation
Indices: 67505182--67505211 Score: 51
Period size: 10 Copynumber: 3.0 Consensus size: 10
67505172 TAAAATTGAG
67505182 AAACTAAAAA
1 AAACTAAAAA
67505192 AAACTAAAAA
1 AAACTAAAAA
*
67505202 AAATTAAAAA
1 AAACTAAAAA
67505212 GATTAAATCT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.80, C:0.07, G:0.00, T:0.13
Consensus pattern (10 bp):
AAACTAAAAA
Found at i:67513181 original size:63 final size:62
Alignment explanation
Indices: 67512969--67513186 Score: 242
Period size: 64 Copynumber: 3.4 Consensus size: 62
67512959 GATAATATCA
* * *
67512969 GTTGCGATCTTAAATCAGCTAACTTAAATAAAATTATTCATGATCTTAAATCAAATGAACTTAG
1 GTTGCAATCTTAAATCAGCTAAC-CAAATAAAATTGTTCATGATCTTAAATC-AATGAACTTAG
* * * * *
67513033 GTTGCGATCTTAAATCAACTAA-CATTAATAATATTAGTT-GTGATCTTAAATCAATGAGCTGTT
1 GTTGCAATCTTAAATCAGCTAACCA--AATAAAATT-GTTCATGATCTTAAATCAATGAAC---T
*
67513096 TGG
60 TAG
*
67513099 AGTTGCAATATTAAATCAGCTAACCAAATAAAATTGTTCATGATCTTAAATCGAATGAACTTAG
1 -GTTGCAATCTTAAATCAGCTAACCAAATAAAATTGTTCATGATCTTAAATC-AATGAACTTAG
67513163 GTTGCAATCTTAAATCAGCTAACC
1 GTTGCAATCTTAAATCAGCTAACC
67513187 GTAATAATAT
Statistics
Matches: 129, Mismatches: 15, Indels: 21
0.78 0.09 0.13
Matches are distributed among these distances:
62 1 0.01
63 29 0.22
64 44 0.34
65 5 0.04
66 23 0.18
67 25 0.19
68 2 0.02
ACGTcount: A:0.38, C:0.15, G:0.13, T:0.34
Consensus pattern (62 bp):
GTTGCAATCTTAAATCAGCTAACCAAATAAAATTGTTCATGATCTTAAATCAATGAACTTAG
Found at i:67513310 original size:131 final size:131
Alignment explanation
Indices: 67512968--67513375 Score: 548
Period size: 131 Copynumber: 3.1 Consensus size: 131
67512958 TGATAATATC
* * *
67512968 AGTTGCGATCTTAAATCAGCTAACTTAAATAAAATTATTCATGATCTTAAATCAAATGAACTTAG
1 AGTTGCGATATTAAATCAGCTAACTTAAATAAAATTGTTCATGATCTTAAATCGAATGAACTTAG
* * * * * * *
67513033 GTTGCGATCTTAAATCAACTAACATTAATAATATTAGTTGTGATCTTAAATCAATGAGCTGTTTG
66 GTTGCAATCTTAAATCAGCTAACCTTAATAATATCAGTTGTGATCTTAAATCAACGAGTTGTTCG
67513098 G
131 G
* *
67513099 AGTTGCAATATTAAATCAGCTAAC-CAAATAAAATTGTTCATGATCTTAAATCGAATGAACTTAG
1 AGTTGCGATATTAAATCAGCTAACTTAAATAAAATTGTTCATGATCTTAAATCGAATGAACTTAG
* * *
67513163 GTTGCAATCTTAAATCAGCTAACCGTAATAATATCAGTTGTGATGTTAAATCAACGAGTTGTTCA
66 GTTGCAATCTTAAATCAGCTAACCTTAATAATATCAGTTGTGATCTTAAATCAACGAGTTGTTCG
67513228 G
131 G
* ** * * *
67513229 AGTTGCGATATTAAATTAATTAACTTGAACAAAATTGTTCATGATCTTAAATCGAATGAAGTTAG
1 AGTTGCGATATTAAATCAGCTAACTTAAATAAAATTGTTCATGATCTTAAATCGAATGAACTTAG
*** * * *
67513294 GTTTTTATCTTAAATCAGCTAGCCTTGATAATATCAGTTGTGATCTTAAATCAACAAGTTGTTCG
66 GTTGCAATCTTAAATCAGCTAACCTTAATAATATCAGTTGTGATCTTAAATCAACGAGTTGTTCG
67513359 G
131 G
* *
67513360 AGTTGCTAAATTAAAT
1 AGTTGCGATATTAAAT
67513376 AAACTAACAC
Statistics
Matches: 242, Mismatches: 34, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
130 113 0.47
131 129 0.53
ACGTcount: A:0.37, C:0.13, G:0.15, T:0.35
Consensus pattern (131 bp):
AGTTGCGATATTAAATCAGCTAACTTAAATAAAATTGTTCATGATCTTAAATCGAATGAACTTAG
GTTGCAATCTTAAATCAGCTAACCTTAATAATATCAGTTGTGATCTTAAATCAACGAGTTGTTCG
G
Found at i:67520557 original size:29 final size:29
Alignment explanation
Indices: 67520497--67520558 Score: 72
Period size: 30 Copynumber: 2.1 Consensus size: 29
67520487 TTACTTTTCT
* * *
67520497 CCCAATACTTTTACTCCCCCCCACTTTCCA
1 CCCAAAACTTTTACTCCCCACCAC-TCCCA
67520527 CCCAAAACTTTTACTCCCCTACCA-TCCCA
1 CCCAAAACTTTTACTCCCC-ACCACTCCCA
67520556 CCC
1 CCC
67520559 CACCCCGCAT
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
29 7 0.25
30 18 0.64
31 3 0.11
ACGTcount: A:0.23, C:0.52, G:0.00, T:0.26
Consensus pattern (29 bp):
CCCAAAACTTTTACTCCCCACCACTCCCA
Found at i:67520752 original size:13 final size:13
Alignment explanation
Indices: 67520734--67520759 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
67520724 AATAGTAATA
67520734 ATATTATTTATAT
1 ATATTATTTATAT
67520747 ATATTATTTATAT
1 ATATTATTTATAT
67520760 TGTTAAATTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (13 bp):
ATATTATTTATAT
Found at i:67522329 original size:22 final size:22
Alignment explanation
Indices: 67522301--67522344 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
67522291 CTTATTAATG
67522301 GAATTTGTCTATTTCTCATTAA
1 GAATTTGTCTATTTCTCATTAA
67522323 GAATTTGTCTATTTCTCATTAA
1 GAATTTGTCTATTTCTCATTAA
67522345 ATTTCTTATT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.27, C:0.14, G:0.09, T:0.50
Consensus pattern (22 bp):
GAATTTGTCTATTTCTCATTAA
Found at i:67522502 original size:22 final size:23
Alignment explanation
Indices: 67522475--67522521 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 23
67522465 TCTAAATTCT
67522475 TATACA-TTTTTATTTTTATAAA
1 TATACATTTTTTATTTTTATAAA
*
67522497 TATACATTTTTTTATTTTTTTAAA
1 TATACA-TTTTTTATTTTTATAAA
67522521 T
1 T
67522522 TTAAAAAATT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 6 0.27
24 16 0.73
ACGTcount: A:0.32, C:0.04, G:0.00, T:0.64
Consensus pattern (23 bp):
TATACATTTTTTATTTTTATAAA
Found at i:67533653 original size:16 final size:17
Alignment explanation
Indices: 67533624--67533656 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
67533614 GATAAATAGA
67533624 TTTTTAATAATTTTAATT
1 TTTTTAAT-ATTTTAATT
67533642 TTTTTAAT-TTTTAAT
1 TTTTTAATATTTTAAT
67533657 AATTTATTTA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 7 0.47
18 8 0.53
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (17 bp):
TTTTTAATATTTTAATT
Found at i:67535113 original size:24 final size:24
Alignment explanation
Indices: 67535061--67535115 Score: 60
Period size: 24 Copynumber: 2.2 Consensus size: 24
67535051 TGAAAATGAG
*
67535061 TTTATTTTTTATGATTTGCATGAAC
1 TTTA-TTTTTATGATTTGCATGAAA
67535086 TTTATTTTTAT-ATTTAG-ATGGAAA
1 TTTATTTTTATGATTT-GCAT-GAAA
67535110 TTTATT
1 TTTATT
67535116 CATATACATA
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
23 6 0.22
24 17 0.63
25 4 0.15
ACGTcount: A:0.27, C:0.04, G:0.11, T:0.58
Consensus pattern (24 bp):
TTTATTTTTATGATTTGCATGAAA
Found at i:67536031 original size:9 final size:9
Alignment explanation
Indices: 67536019--67536249 Score: 59
Period size: 9 Copynumber: 24.8 Consensus size: 9
67536009 AATTAGAAAA
67536019 AAAAATTAT
1 AAAAATTAT
67536028 AAAAA-TA-
1 AAAAATTAT
67536035 AAAAATGT-T
1 AAAAAT-TAT
*
67536044 AAATATT-T
1 AAAAATTAT
*
67536052 AAAAATTTT
1 AAAAATTAT
67536061 AAAAA-TAT
1 AAAAATTAT
** *
67536069 TTACATTGAT
1 AAAAATT-AT
*
67536079 ATAAACTTATT
1 A-AAAATTA-T
*
67536090 AAAATTATTAA
1 AAAA--ATTAT
67536101 AAAAATTAT
1 AAAAATTAT
* *
67536110 ACAAACTTGT
1 A-AAAATTAT
*
67536120 AAATATTAT
1 AAAAATTAT
67536129 -AAAATTAT
1 AAAAATTAT
67536137 AAAAAAAATTAT
1 ---AAAAATTAT
67536149 -AAAATTAAT
1 AAAAATT-AT
* *
67536158 AGAACTTATTT
1 AAAAATTA--T
67536169 AAAATATT-T
1 AAAA-ATTAT
*
67536178 AAAATTTA-
1 AAAAATTAT
67536186 AAAAATGTAT
1 AAAAAT-TAT
* *
67536196 TAGAATTATT
1 AAAAATTA-T
*
67536206 AAAAATAAT
1 AAAAATTAT
* *
67536215 AAAATTTGT
1 AAAAATTAT
67536224 AAAAATGCTAT
1 AAAAAT--TAT
67536235 AAAAA-TAT
1 AAAAATTAT
*
67536243 TAAAATT
1 AAAAATT
67536250 GATTTAAGCT
Statistics
Matches: 159, Mismatches: 36, Indels: 54
0.64 0.14 0.22
Matches are distributed among these distances:
7 5 0.03
8 41 0.26
9 53 0.33
10 27 0.17
11 20 0.13
12 13 0.08
ACGTcount: A:0.58, C:0.03, G:0.03, T:0.36
Consensus pattern (9 bp):
AAAAATTAT
Found at i:67536205 original size:38 final size:38
Alignment explanation
Indices: 67536135--67536230 Score: 97
Period size: 38 Copynumber: 2.5 Consensus size: 38
67536125 TTATAAAATT
* * * *
67536135 ATAAAAAAAATTATAAAAT-TAATAGAACTTATTTAAA
1 ATAATAAAATTTAAAAAATGTAATAGAACTTATTAAAA
* *
67536172 ATATTTAAAATTTAAAAAATGTATTAGAA-TTATTAAAA
1 ATA-ATAAAATTTAAAAAATGTAATAGAACTTATTAAAA
*
67536210 ATAATAAAATTTGTAAAAATG
1 ATAATAAAATTT-AAAAAATG
67536231 CTATAAAAAT
Statistics
Matches: 48, Mismatches: 8, Indels: 5
0.79 0.13 0.08
Matches are distributed among these distances:
37 11 0.23
38 30 0.62
39 7 0.15
ACGTcount: A:0.58, C:0.01, G:0.05, T:0.35
Consensus pattern (38 bp):
ATAATAAAATTTAAAAAATGTAATAGAACTTATTAAAA
Found at i:67536734 original size:9 final size:9
Alignment explanation
Indices: 67536676--67536920 Score: 97
Period size: 10 Copynumber: 25.8 Consensus size: 9
67536666 CAAGTTCAAG
*
67536676 TTTTTATTA
1 TTTTTATAA
*
67536685 TTTTTTTAA
1 TTTTTATAA
67536694 -TTTTATAA
1 TTTTTATAA
*
67536702 GTTTATATCAA
1 -TTTTTAT-AA
*
67536713 TTTTAAT-A
1 TTTTTATAA
*
67536721 CTTTTATAA
1 TTTTTATAA
*
67536730 TTTTTTACAAA
1 -TTTTTA-TAA
*
67536741 TTTTTTATGAT
1 -TTTTTAT-AA
67536752 TTTTGTATAA
1 TTTT-TATAA
* *
67536762 TTTTAATATG
1 TTTTTATA-A
67536772 TTTTTATAAA
1 TTTTTAT-AA
*
67536782 ATTTTA-AA
1 TTTTTATAA
*
67536790 TATTTTAAATA
1 T-TTTTATA-A
67536801 TGTTTTATTAA
1 T-TTTTA-TAA
67536812 -TTTTATAA
1 TTTTTATAA
*
67536820 TTTTTATAG
1 TTTTTATAA
*
67536829 TTTATATCAA
1 TTTTTAT-AA
*
67536839 TTTTCAT-A
1 TTTTTATAA
*
67536847 TTTTTTTAA
1 TTTTTATAA
*
67536856 TTTTTTTAAA
1 TTTTTAT-AA
*
67536866 TTTTTTTAA
1 TTTTTATAA
* *
67536875 ATTTTAT-T
1 TTTTTATAA
67536883 TTTATTCATAA
1 TTT-TT-ATAA
67536894 TTTCTTATAA
1 TTT-TTATAA
*
67536904 TTTTTAATCA
1 TTTTT-ATAA
67536914 TTTTTAT
1 TTTTTAT
67536921 GAGAAATTAT
Statistics
Matches: 179, Mismatches: 35, Indels: 44
0.69 0.14 0.17
Matches are distributed among these distances:
8 26 0.15
9 55 0.31
10 68 0.38
11 29 0.16
12 1 0.01
ACGTcount: A:0.31, C:0.03, G:0.02, T:0.63
Consensus pattern (9 bp):
TTTTTATAA
Found at i:67536775 original size:21 final size:22
Alignment explanation
Indices: 67536729--67536795 Score: 63
Period size: 21 Copynumber: 3.2 Consensus size: 22
67536719 TACTTTTATA
*
67536729 ATTTTT-TACAAATTTT-TTATG
1 ATTTTTATA-AAATTTTAATATG
* *
67536750 ATTTTTGTATAATTTTAATATG
1 ATTTTTATAAAATTTTAATATG
67536772 -TTTTTATAAAATTTTAA-AT-
1 ATTTTTATAAAATTTTAATATG
67536791 ATTTT
1 ATTTT
67536796 AAATATGTTT
Statistics
Matches: 39, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
20 6 0.15
21 27 0.69
22 6 0.15
ACGTcount: A:0.33, C:0.01, G:0.04, T:0.61
Consensus pattern (22 bp):
ATTTTTATAAAATTTTAATATG
Found at i:67536861 original size:19 final size:20
Alignment explanation
Indices: 67536839--67536879 Score: 57
Period size: 19 Copynumber: 2.1 Consensus size: 20
67536829 TTTATATCAA
*
67536839 TTTTCATATTTTTTT-AATT
1 TTTTCAAATTTTTTTAAATT
*
67536858 TTTTTAAATTTTTTTAAATT
1 TTTTCAAATTTTTTTAAATT
67536878 TT
1 TT
67536880 ATTTTTATTC
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
19 13 0.68
20 6 0.32
ACGTcount: A:0.24, C:0.02, G:0.00, T:0.73
Consensus pattern (20 bp):
TTTTCAAATTTTTTTAAATT
Found at i:67537224 original size:21 final size:21
Alignment explanation
Indices: 67537191--67537234 Score: 52
Period size: 21 Copynumber: 2.1 Consensus size: 21
67537181 TTTTTCCCTC
* *
67537191 TCTTTTCCCTTTTTCTTCTTT
1 TCTTTTCCATTTTTCTTCCTT
* *
67537212 TCTTTTTCATTTTTTTTCCTT
1 TCTTTTCCATTTTTCTTCCTT
67537233 TC
1 TC
67537235 CAGCAAACCC
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.02, C:0.25, G:0.00, T:0.73
Consensus pattern (21 bp):
TCTTTTCCATTTTTCTTCCTT
Found at i:67539112 original size:256 final size:255
Alignment explanation
Indices: 67538653--67539165 Score: 848
Period size: 256 Copynumber: 2.0 Consensus size: 255
67538643 GGACCCAAAA
67538653 TGAATAATTCTGAATCCGTTTGTGAATTAATTCACTTGTGACATTCATGGTTTGATTTACCTAAA
1 TGAATAATTCTGAATCCGTTTGTGAATTAATTCACTTGTGACATTCATGGTTTGATTTACCTAAA
* * * *
67538718 TCCTAAGTTAGTCACTGACCATGCGTATGCAAATCATGTGCTTTGGTATAATTGGAGGCTTATGC
66 TCATAAGTTAGTCACTGACCATGCGTATGCAAATCATGTGCTTTGATATAAGTAGAGGCTTATGC
* * *
67538783 TTTAAAGACGACCGAGCCCATAGTCGGTATGTTGTGTACATGACTTGTGTATGGCATGACTTTAC
131 TCTAAAGACGACCGAGCCCATAGTCGGTATGTTGGGTACAAGACTTGTGTATGGCATGACTTTAC
* * * * *
67538848 TAGCAACAGTGGAGTTCATAGCTCAATTAAAAAGTTAATGATTTCTTGTCATTGGCATTG
196 TAGCAACAGTAGAATTCATAGCTCAATTAAAAAGTTAATGATATCCTGCCATTGGCATTG
*
67538908 TGAATTAATTCTGAATCCGTTTGTGAATTAATTCACTTGTGACGTTCATGGTTTGATTTACCTAA
1 TGAA-TAATTCTGAATCCGTTTGTGAATTAATTCACTTGTGACATTCATGGTTTGATTTACCTAA
*
67538973 ATCATGAGTTAGTCACTGACCATGCGTATGCAAATCATGTGCTTTGATATAAGTAGAGGCTTATG
65 ATCATAAGTTAGTCACTGACCATGCGTATGCAAATCATGTGCTTTGATATAAGTAGAGGCTTATG
* * *
67539038 CTCTAAAGATGATCGGGCCCATAG-CTGGTATGTTGGGTACAAGACTTGTGTATGGCATGACTTT
130 CTCTAAAGACGACCGAGCCCATAGTC-GGTATGTTGGGTACAAGACTTGTGTATGGCATGACTTT
67539102 ACTAGCAACAGTAGAATTCATAGCTCAATTAAAAAGTTAATGATATCCTGCCATTGGCATTG
194 ACTAGCAACAGTAGAATTCATAGCTCAATTAAAAAGTTAATGATATCCTGCCATTGGCATTG
67539164 TG
1 TG
67539166 TGGATGGATA
Statistics
Matches: 239, Mismatches: 17, Indels: 3
0.92 0.07 0.01
Matches are distributed among these distances:
255 5 0.02
256 234 0.98
ACGTcount: A:0.28, C:0.16, G:0.21, T:0.35
Consensus pattern (255 bp):
TGAATAATTCTGAATCCGTTTGTGAATTAATTCACTTGTGACATTCATGGTTTGATTTACCTAAA
TCATAAGTTAGTCACTGACCATGCGTATGCAAATCATGTGCTTTGATATAAGTAGAGGCTTATGC
TCTAAAGACGACCGAGCCCATAGTCGGTATGTTGGGTACAAGACTTGTGTATGGCATGACTTTAC
TAGCAACAGTAGAATTCATAGCTCAATTAAAAAGTTAATGATATCCTGCCATTGGCATTG
Found at i:67543426 original size:18 final size:18
Alignment explanation
Indices: 67543403--67543441 Score: 78
Period size: 18 Copynumber: 2.2 Consensus size: 18
67543393 AAACTCGAGC
67543403 ACCAAATGATATATTTAA
1 ACCAAATGATATATTTAA
67543421 ACCAAATGATATATTTAA
1 ACCAAATGATATATTTAA
67543439 ACC
1 ACC
67543442 TATAAAGTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.49, C:0.15, G:0.05, T:0.31
Consensus pattern (18 bp):
ACCAAATGATATATTTAA
Found at i:67545761 original size:13 final size:13
Alignment explanation
Indices: 67545743--67545771 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
67545733 AAAATTAAGG
67545743 TTAAACTCTGCTA
1 TTAAACTCTGCTA
67545756 TTAAACTCTGCTA
1 TTAAACTCTGCTA
67545769 TTA
1 TTA
67545772 GTCCCTGCAC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.31, C:0.21, G:0.07, T:0.41
Consensus pattern (13 bp):
TTAAACTCTGCTA
Found at i:67548458 original size:13 final size:13
Alignment explanation
Indices: 67548442--67548466 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
67548432 AAAATCCAAA
67548442 ATGAAAAATTAAT
1 ATGAAAAATTAAT
67548455 ATGAAAAATTAA
1 ATGAAAAATTAA
67548467 AAACAAAACT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.64, C:0.00, G:0.08, T:0.28
Consensus pattern (13 bp):
ATGAAAAATTAAT
Found at i:67548878 original size:5 final size:5
Alignment explanation
Indices: 67548868--67548896 Score: 58
Period size: 5 Copynumber: 5.8 Consensus size: 5
67548858 TTTAATGAAA
67548868 ATATT ATATT ATATT ATATT ATATT ATAT
1 ATATT ATATT ATATT ATATT ATATT ATAT
67548897 GAGAAGAAGC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 24 1.00
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (5 bp):
ATATT
Found at i:67557254 original size:13 final size:13
Alignment explanation
Indices: 67557236--67557260 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
67557226 GTTTTTATAA
67557236 AAAAATAAAAAAT
1 AAAAATAAAAAAT
67557249 AAAAATAAAAAA
1 AAAAATAAAAAA
67557261 AAACTAAAGA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.88, C:0.00, G:0.00, T:0.12
Consensus pattern (13 bp):
AAAAATAAAAAAT
Found at i:67566454 original size:9 final size:9
Alignment explanation
Indices: 67566440--67566525 Score: 118
Period size: 9 Copynumber: 9.4 Consensus size: 9
67566430 TTTGGTTAAA
67566440 AATTACCCG
1 AATTACCCG
67566449 AATTACCCG
1 AATTACCCG
67566458 AATTACCCG
1 AATTACCCG
*
67566467 AATTAACCG
1 AATTACCCG
67566476 AATTACCCG
1 AATTACCCG
*
67566485 AATTAACCG
1 AATTACCCG
**
67566494 AATTACCATA
1 AATTACC-CG
*
67566504 AAATACCCG
1 AATTACCCG
67566513 AATTACCCG
1 AATTACCCG
67566522 AATT
1 AATT
67566526 TTTTTTTATT
Statistics
Matches: 66, Mismatches: 10, Indels: 2
0.85 0.13 0.03
Matches are distributed among these distances:
9 60 0.91
10 6 0.09
ACGTcount: A:0.40, C:0.28, G:0.09, T:0.23
Consensus pattern (9 bp):
AATTACCCG
Found at i:67570183 original size:17 final size:17
Alignment explanation
Indices: 67570163--67570198 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 17
67570153 TGTTTTCTTT
67570163 TTCAAATT-AGTCCCTAA
1 TTCAAATTAAG-CCCTAA
67570180 TTCAAATTAAGCCCTAA
1 TTCAAATTAAGCCCTAA
67570197 TT
1 TT
67570199 TTAAAATAAC
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 16 0.89
18 2 0.11
ACGTcount: A:0.36, C:0.22, G:0.06, T:0.36
Consensus pattern (17 bp):
TTCAAATTAAGCCCTAA
Found at i:67571356 original size:318 final size:303
Alignment explanation
Indices: 67570611--67571506 Score: 951
Period size: 308 Copynumber: 2.9 Consensus size: 303
67570601 AGGTGTGGGA
* * * * * * * *
67570611 TCCACTTTCACAAAAATT-TTAAAATATCCATAGCTCAGTTTTCATTTAATGTTGTTAAAATAAT
1 TCCACTTTGAC-AACATTCTTAAAATATCCACACCTCAATTTTCATTTAATATAGTTGAAATAA-
*** * *
67570675 TTTTTTTAAAACATCCATAGCTTAGTTATCATTTAATGTACTTGAATTTTGGGTTG-TTGAATCA
64 AAATTTTAAAATATGCATAGCTTAGTTATCATTTAATGTACTTGAATTTTGGGTTGTTTG-ATCA
* * *
67570739 AGTGAGGGAAATTGGATGGAATTCATATTCAATGTAATTATTATCAATTTTACCCACAATTGTGA
128 AGTAAGGGAAATTCGATGGAATTCATATTCAATGTAATTATTAT--ATTTTACTCACAATTGTGA
* * * * *
67570804 GGATAGTTTAGTTGGGAGAGTGTTAGACTGAAGATTTGAAGGTCATGTGTTCGATCCTCGCTCAT
191 GGATAGCTTAGTTGGGAGAGTGTTAGACTGAAGATTTGAAGGTCACGTGTTTGATCCACGTTCAT
* * * *
67570869 CACATTTAAAACTATCCATAAAGGAGTGTGTTAGACTAAATACTTGAAGGG
256 CGCATTTTAAA--A-CCATAAAGGAGAGTGTTAGACTAAATACTTCAAGGG
* * * *
67570920 TCCACTTTTACAACATTTTTAAAATATCCATACCTCAGTTTTCATTTAATATAGTTGAAATAAAA
1 TCCACTTTGACAACATTCTTAAAATATCCACACCTCAATTTTCATTTAATATAGTTGAAATAAAA
* * * *
67570985 ATTTTAAAATATTCATAGCTTAATTATCATCTAATGAACTTGAATTTTGGGTTGTTTGATCAAGT
66 ATTTTAAAATATGCATAGCTTAGTTATCATTTAATGTACTTGAATTTTGGGTTGTTTGATCAAGT
* * * *
67571050 AAGGGAAATTCGATGCAATTCATATTCAATGTAATTATTAT-TTATACTCACTATTGCGAGGATA
131 AAGGGAAATTCGATGGAATTCATATTCAATGTAATTATTATATTTTACTCACAATTGTGAGGATA
* * *
67571114 GCTTAGTTAGGAGAGCGTTAGACTGAAGATTTGAAGTTCACGTGTTTGATCCACGTTCATCGCAT
196 GCTTAGTTGGGAGAGTGTTAGACTGAAGATTTGAAGGTCACGTGTTTGATCCACGTTCATCGCAT
* *
67571179 TTTAAAA-CATAAAGGAGAGTGTTATACTAAATTCTTCAAGGGACATG
261 TTTAAAACCATAAAGGAGAGTGTTAGACTAAATACTTCAA-GG----G
67571226 TCTTCTATCCACTTTGACAACATTCTTAAAATATCCACACCTCAATTTTCA-TTACATTTATTGT
1 -------TCCACTTTGACAACATTCTTAAAATATCCACACCTCAATTTTCATTTA-A--TA---T
* * * *
67571290 AGTTGAAAT-AACATTTTGAAAATATGCATAGCTTCGTTACCATTTAATGTACATGAATTTTGGG
53 AGTTGAAATAAAAATTTT-AAAATATGCATAGCTTAGTTATCATTTAATGTACTTGAATTTTGGG
* * * * *
67571354 TTGTTGGATTAAGTAAGGGAAATTCGATGGAATTCATACTCAATCTAATTATTATTAATTTTAAT
117 TTGTTTGATCAAGTAAGGGAAATTCGATGGAATTCATATTCAATGTAATTATTA-T-ATTTTACT
* * * * * *
67571419 CACAATTGTGAGGATAGCTCAGTTGGGAGAGTGTCAAATTGATGATCT-AATGGTCACGTGTTTG
180 CACAATTGTGAGGATAGCTTAGTTGGGAGAGTGTTAGACTGAAGATTTGAA-GGTCACGTGTTTG
*
67571483 ATCCAAGTTCATCGCATTTTAAAA
244 ATCCACGTTCATCGCATTTTAAAA
67571507 ATATCGATAA
Statistics
Matches: 496, Mismatches: 66, Indels: 38
0.83 0.11 0.06
Matches are distributed among these distances:
301 28 0.06
302 2 0.00
303 1 0.00
305 80 0.16
306 1 0.00
308 98 0.20
309 54 0.11
312 3 0.01
313 41 0.08
315 2 0.00
317 7 0.01
318 98 0.20
319 1 0.00
320 2 0.00
321 78 0.16
ACGTcount: A:0.33, C:0.14, G:0.16, T:0.37
Consensus pattern (303 bp):
TCCACTTTGACAACATTCTTAAAATATCCACACCTCAATTTTCATTTAATATAGTTGAAATAAAA
ATTTTAAAATATGCATAGCTTAGTTATCATTTAATGTACTTGAATTTTGGGTTGTTTGATCAAGT
AAGGGAAATTCGATGGAATTCATATTCAATGTAATTATTATATTTTACTCACAATTGTGAGGATA
GCTTAGTTGGGAGAGTGTTAGACTGAAGATTTGAAGGTCACGTGTTTGATCCACGTTCATCGCAT
TTTAAAACCATAAAGGAGAGTGTTAGACTAAATACTTCAAGGG
Found at i:67576989 original size:26 final size:28
Alignment explanation
Indices: 67576955--67577007 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 28
67576945 AACAATCATT
67576955 GCATAGTCATGAACTAAGC-AATGAAAA
1 GCATAGTCATGAACTAAGCAAATGAAAA
* *
67576982 GCAT-GTCATGGATTAAGCAAATGAAA
1 GCATAGTCATGAACTAAGCAAATGAAA
67577008 GAAAATTACC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 12 0.52
27 11 0.48
ACGTcount: A:0.45, C:0.13, G:0.21, T:0.21
Consensus pattern (28 bp):
GCATAGTCATGAACTAAGCAAATGAAAA
Found at i:67577390 original size:3 final size:3
Alignment explanation
Indices: 67577382--67577411 Score: 60
Period size: 3 Copynumber: 10.0 Consensus size: 3
67577372 TCAATTGGAA
67577382 CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT
1 CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT
67577412 GGGAAAGTAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.33, C:0.33, G:0.00, T:0.33
Consensus pattern (3 bp):
CAT
Found at i:67577757 original size:29 final size:26
Alignment explanation
Indices: 67577705--67577761 Score: 71
Period size: 29 Copynumber: 2.1 Consensus size: 26
67577695 AAAATTTTAG
67577705 AAAATTATAAAATTAAAAATTAAATA
1 AAAATTATAAAATTAAAAATTAAATA
67577731 AAAATTGATAAAAATTTCAAAAA-TAAATA
1 AAAATT-AT-AAAA-TT-AAAAATTAAATA
67577760 AA
1 AA
67577762 GTGAGAGAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
26 6 0.22
27 2 0.07
28 4 0.15
29 10 0.37
30 5 0.19
ACGTcount: A:0.68, C:0.02, G:0.02, T:0.28
Consensus pattern (26 bp):
AAAATTATAAAATTAAAAATTAAATA
Found at i:67578512 original size:38 final size:39
Alignment explanation
Indices: 67578453--67578530 Score: 115
Period size: 38 Copynumber: 2.0 Consensus size: 39
67578443 CCAAATATAA
67578453 TAAATATATTTTTTAATTTTTTAATTTTAAAAT-ATTTT
1 TAAATATATTTTTTAATTTTTTAATTTTAAAATAATTTT
* *
67578491 TAAA-ATACTTTTTTATTTTTTTATTTTTAAAATAATTTT
1 TAAATATA-TTTTTTAATTTTTTAATTTTAAAATAATTTT
67578530 T
1 T
67578531 TGTATTTATT
Statistics
Matches: 36, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
37 3 0.08
38 27 0.75
39 6 0.17
ACGTcount: A:0.35, C:0.01, G:0.00, T:0.64
Consensus pattern (39 bp):
TAAATATATTTTTTAATTTTTTAATTTTAAAATAATTTT
Found at i:67581319 original size:39 final size:39
Alignment explanation
Indices: 67581286--67581368 Score: 123
Period size: 39 Copynumber: 2.1 Consensus size: 39
67581276 CTATATTTCT
*
67581286 TAAACCCTAAATCATAGAACATATATAAACTATAAACCC
1 TAAACCCTAAATCATAAAACATATATAAACTATAAACCC
* *
67581325 TAAACCCTGAATCATAAAACATATATAAACCT-TAAACCT
1 TAAACCCTAAATCATAAAACATATATAAA-CTATAAACCC
67581364 TAAAC
1 TAAAC
67581369 TTTAACCCTT
Statistics
Matches: 40, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
39 38 0.95
40 2 0.05
ACGTcount: A:0.51, C:0.23, G:0.02, T:0.24
Consensus pattern (39 bp):
TAAACCCTAAATCATAAAACATATATAAACTATAAACCC
Found at i:67581978 original size:127 final size:126
Alignment explanation
Indices: 67581752--67581989 Score: 298
Period size: 127 Copynumber: 1.9 Consensus size: 126
67581742 GCACTTTCGA
* * ** * **
67581752 TAAAGCACCGCTAATGTTTGACTTTTGTTGCGTTTTTTGTAAAGCGCCACTAATGTCTCTAAAGT
1 TAAAGCACCGCTAATGATTGACTTATGCGGCGTTTTTCGTAAAGCGCCACTAATGTCTCTAAACC
** *
67581817 TCAACAGAAAAACGACGCCGTTTGCTTAAAACTTTTTGCGGCGCTTTATGCGGCGCTTCCCT
66 TCAACAGAAAAACGACGCCGTTTAATAAAAAC-TTTTGCGGCGCTTTATGCGGCGCTTCCCT
* * *
67581879 TAAAGCGCCGCTAATGATTGACTTATGCGGCGTTTTTCGTAAAGCTCCACTAATGTGTCTAAACC
1 TAAAGCACCGCTAATGATTGACTTATGCGGCGTTTTTCGTAAAGCGCCACTAATGTCTCTAAACC
* ** *
67581944 TCAACATG-TAAACGACGTTGTTTAATAAAAACTTTTGTGGCGCTTT
66 TCAACA-GAAAAACGACGCCGTTTAATAAAAACTTTTGCGGCGCTTT
67581990 GAAGAAAGTG
Statistics
Matches: 93, Mismatches: 17, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
126 13 0.14
127 79 0.85
128 1 0.01
ACGTcount: A:0.26, C:0.21, G:0.19, T:0.34
Consensus pattern (126 bp):
TAAAGCACCGCTAATGATTGACTTATGCGGCGTTTTTCGTAAAGCGCCACTAATGTCTCTAAACC
TCAACAGAAAAACGACGCCGTTTAATAAAAACTTTTGCGGCGCTTTATGCGGCGCTTCCCT
Found at i:67582852 original size:50 final size:50
Alignment explanation
Indices: 67582758--67582852 Score: 118
Period size: 50 Copynumber: 1.9 Consensus size: 50
67582748 CTTTCACTAT
* * * * *
67582758 ATTTTTAGAATATCCATACCTCGGTTTTCATTTAATGTAGTTGAAATAAC
1 ATTTTTAAAATATCCATACCTCAGTTATCATTTAATGCACTTGAAATAAC
* * *
67582808 ATTTTTAAAATATGCATAGCTTAGTTATCATTTAATGCACTTGAA
1 ATTTTTAAAATATCCATACCTCAGTTATCATTTAATGCACTTGAA
67582853 TTTTGTGTTG
Statistics
Matches: 37, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
50 37 1.00
ACGTcount: A:0.34, C:0.13, G:0.12, T:0.42
Consensus pattern (50 bp):
ATTTTTAAAATATCCATACCTCAGTTATCATTTAATGCACTTGAAATAAC
Found at i:67583174 original size:322 final size:319
Alignment explanation
Indices: 67582320--67583373 Score: 1270
Period size: 320 Copynumber: 3.3 Consensus size: 319
67582310 GTAGTGTGAT
* * * * *
67582320 GATCTAATGGTCACGTGTTTGATCCATGTTCATCGCATTTTAAAAATGTCGATAA-ATGGAGAGT
1 GATCTAAAGGTCACGTGTTCGATCCATGTTCATCACATTTTAAAAATATC--TAAGA-GGAGGGT
* * * ** * * *
67582384 GTTAGACTAAATTCTTCAAGGGTCACGTCTTC-AGTC-CGCTTTCATAGCCTTTATTTTTTAAAA
63 GTTAGACTAAATACTTGAAGGGTCACCTGGTCGATTCACG--TTCACA-AC---A-TTTTT-AAA
* * * *
67582447 ATATACATAGCGCACT-TGTCATTTAATGTAGTTGAAATAACATTTTTAAAATATGCATAGCTTA
120 ATATCCATACCTCAGTGT-TCATTTAATGTAGTTGAAATAACATTTTTAAAATATGCATAGCTTA
* * * * *
67582511 GTTATCATTTAATGTACTTGAATTTTGGGTTGTTGGATCAAGGAAGGGAAATTCGATGGAATTAA
184 GTTATCATTTAATGAACTTGAATTTTGTGTTGTTGGATCAAGTAAGGGAAATTCGATGCAATTCA
* *
67582576 TACTCAATGTAATTATTATTATTTTTACTTATAGTTGTGAGGATAGCTCA-TTGGGAGAGCGTCA
249 TACTCAATGTAATTATTA-TATTTTTACTTATAGTTGCGAGGATAGCTCAGTTGGGAGAGCGTAA
67582640 GAATGAA
313 GAATGAA
* * * * * *
67582647 GATCTGAAGATCATGTGTTCGGTCCACGTTCATCACATTTTAAAAATATCCATAGAGGAGGGTGT
1 GATCTAAAGGTCACGTGTTCGATCCATGTTCATCACATTTTAAAAATATCTA-AGAGGAGGGTGT
* * * * *
67582712 TAGACTAAATACTTGAAGAGTCACCTGGTCGATTCACTTTCACTATATTTTTAGAATATCCATAC
65 TAGACTAAATACTTGAAGGGTCACCTGGTCGATTCACGTTCACAACATTTTTAAAATATCCATAC
* *
67582777 CTCGGTTTTCATTTAATGTAGTTGAAATAACATTTTTAAAATATGCATAGCTTAGTTATCATTTA
130 CTCAGTGTTCATTTAATGTAGTTGAAATAACATTTTTAAAATATGCATAGCTTAGTTATCATTTA
* *
67582842 ATGCACTTGAATTTTGTGTTGTTGGATCAAGTAAGGGAAATTCGATGCAATTCATACTCAATATA
195 ATGAACTTGAATTTTGTGTTGTTGGATCAAGTAAGGGAAATTCGATGCAATTCATACTCAATGTA
* * * * *
67582907 ATTATTATCATTTTTACTTATAATTGCGAGGATAGCTTAGTTGGAAGAGTGTAAGAGTGAA
260 ATTATTAT-ATTTTTACTTATAGTTGCGAGGATAGCTCAGTTGGGAGAGCGTAAGAATGAA
* *
67582968 GATCTAAAGGTCCACGTGTTCGATCCATTTTCATCACATTTTAAAAATATCTGAAGAGGAGAGTG
1 GATCTAAAGGT-CACGTGTTCGATCCATGTTCATCACATTTTAAAAATATCT-AAGAGGAGGGTG
67583033 TTAGACTAAATACTTGAAGGGTCACCTGGTCGA-TCAACGTTCACAACATTTTTAAAATATCCAT
64 TTAGACTAAATACTTGAAGGGTCACCTGGTCGATTC-ACGTTCACAACATTTTTAAAATATCCAT
* * * * * *
67583097 ATCTCAGTGTTCATTTAATGTAGTCGAAATAAAAATTTTAAAATATTCATAGCTTATTTATCATT
128 ACCTCAGTGTTCATTTAATGTAGTTGAAATAACATTTTTAAAATATGCATAGCTTAGTTATCATT
* *
67583162 TATTGAACTTGAA-TTT-TGTTGTTCGATCAAGTAAGGGAAATTCGATGCAATTCATACTCAATG
193 TAATGAACTTGAATTTTGTGTTGTTGGATCAAGTAAGGGAAATTCGATGCAATTCATACTCAATG
* * * *
67583225 TAATTA-T-TATTTTTACTTACAGTTGCGAGTATAGCTCAGTTGGGAGAGCGTTAGACTGAA
258 TAATTATTATATTTTTACTTATAGTTGCGAGGATAGCTCAGTTGGGAGAGCGTAAGAATGAA
*
67583285 GATCAAAAGGTCACGTGTTCGATCC-TCGTTCATCACA-TTTAAAAGATATCCATAA-AGGAGGG
1 GATCTAAAGGTCACGTGTTCGATCCAT-GTTCATCACATTTTAAAA-ATAT-C-TAAGAGGAGGG
* *
67583347 TGTTAGACAAAATTCTTGAAGGGTCAC
62 TGTTAGACTAAATACTTGAAGGGTCAC
67583374 GTCTTCGATC
Statistics
Matches: 633, Mismatches: 80, Indels: 39
0.84 0.11 0.05
Matches are distributed among these distances:
315 8 0.01
316 58 0.09
317 57 0.09
318 2 0.00
319 2 0.00
320 214 0.34
321 37 0.06
322 170 0.27
323 1 0.00
325 1 0.00
326 37 0.06
327 45 0.07
328 1 0.00
ACGTcount: A:0.32, C:0.14, G:0.18, T:0.36
Consensus pattern (319 bp):
GATCTAAAGGTCACGTGTTCGATCCATGTTCATCACATTTTAAAAATATCTAAGAGGAGGGTGTT
AGACTAAATACTTGAAGGGTCACCTGGTCGATTCACGTTCACAACATTTTTAAAATATCCATACC
TCAGTGTTCATTTAATGTAGTTGAAATAACATTTTTAAAATATGCATAGCTTAGTTATCATTTAA
TGAACTTGAATTTTGTGTTGTTGGATCAAGTAAGGGAAATTCGATGCAATTCATACTCAATGTAA
TTATTATATTTTTACTTATAGTTGCGAGGATAGCTCAGTTGGGAGAGCGTAAGAATGAA
Found at i:67586151 original size:20 final size:20
Alignment explanation
Indices: 67586126--67586182 Score: 56
Period size: 20 Copynumber: 3.2 Consensus size: 20
67586116 ATGGGTTGTT
67586126 ATAAGTAATATGTGAAAATA
1 ATAAGTAATATGTGAAAATA
*
67586146 ATAAGT--TAT-TG----TT
1 ATAAGTAATATGTGAAAATA
67586159 ATAAGTAATATGTGAAAATA
1 ATAAGTAATATGTGAAAATA
67586179 ATAA
1 ATAA
67586183 ATTAACATGG
Statistics
Matches: 28, Mismatches: 2, Indels: 14
0.64 0.05 0.32
Matches are distributed among these distances:
13 7 0.25
15 3 0.11
16 2 0.07
17 2 0.07
18 3 0.11
20 11 0.39
ACGTcount: A:0.51, C:0.00, G:0.14, T:0.35
Consensus pattern (20 bp):
ATAAGTAATATGTGAAAATA
Found at i:67595650 original size:16 final size:16
Alignment explanation
Indices: 67595629--67595659 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
67595619 AGTTTGTTTT
*
67595629 TATAATATATAAATTA
1 TATAATATAAAAATTA
67595645 TATAATATAAAAATT
1 TATAATATAAAAATT
67595660 TTGAAAAATA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (16 bp):
TATAATATAAAAATTA
Found at i:67595690 original size:13 final size:14
Alignment explanation
Indices: 67595654--67595703 Score: 50
Period size: 14 Copynumber: 3.6 Consensus size: 14
67595644 ATATAATATA
67595654 AAAATTTTGAAAAAT
1 AAAA-TTTGAAAAAT
*
67595669 AAAATTTGAAAACT
1 AAAATTTGAAAAAT
* *
67595683 TAAA-TTGAAATAT
1 AAAATTTGAAAAAT
67595696 -AAATTTGA
1 AAAATTTGA
67595704 TTTGTCTTAT
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
12 3 0.10
13 11 0.37
14 12 0.40
15 4 0.13
ACGTcount: A:0.56, C:0.02, G:0.08, T:0.34
Consensus pattern (14 bp):
AAAATTTGAAAAAT
Found at i:67598635 original size:695 final size:695
Alignment explanation
Indices: 67597306--67598701 Score: 2612
Period size: 695 Copynumber: 2.0 Consensus size: 695
67597296 ACTTTCAGGG
67597306 AAATAATCCCCTGTCCTAAAACGCGGTGCTTCAGCGAGGATTAAAATGAAATCAGCATAAAATTT
1 AAATAATCCCCTGTCCTAAAACGCGGTGCTTCAGCGAGGATTAAAATGAAATCAGCATAAAATTT
67597371 ATGGGCCAAAACGAAAGAAAACAAAAGGGTCAGATTGCACTACACTATAAAAGCGGAGGGGCTGA
66 ATGGGCCAAAACGAAAGAAAACAAAAGGGTCAGATTGCACTACACTATAAAAGCGGAGGGGCTGA
*
67597436 GCGCGCAAATAGCCCCTCCAGGTGCAACACGCGGATCCTCAGGGCCATCGGGTCAGGTCATGCAC
131 GCGCGCAAATAGCCCCTCCAGGTGCAACACGCGGATCCTCAGGGCCATCGAGTCAGGTCATGCAC
67597501 GGGTACCCCCATACGACGCCGTTTTGAGGCCACTGAAACATACCTCAAACGGCGCCGTTTTGCAT
196 GGGTACCCCCATACGACGCCGTTTTGAGGCCACTGAAACATACCTCAAACGGCGCCGTTTTGCAT
*
67597566 CTATTATAAAGGTAATTTTTTTTAAAAATCATTCTGCCATTAGAAAATAGAAAAAAAAACTGTTA
261 CTATTATAAAGGTAATTTTTTTAAAAAATCATTCTGCCATTAGAAAATAGAAAAAAAAACTGTTA
**
67597631 AAAACTCTCTCACTCTCTTCTCTTCTTCCCCAAATCTGGCTAGAGTGCCGACGAGCTTTTGTGGT
326 AAAACTCTCTCACTCTCTTCTCTTCTTCCCCAAATCTGGCTAGAGCACCGACGAGCTTTTGTGGT
* ** * ***
67597696 GGCTCCGCCGCATCTCCGCCCTAGTGTTGCTGTGCCAGAAGGCTGACAGACGTCCAAAACCCCCC
391 GGCTCCGCCGCATCTCCGCCCTAGCGCCGCCGTGCCAGAAGGCTGACAGACGTCCAAAACCCAAA
67597761 AAAAAAATTATTTTTTAAAAAAACTCCTATTTTCTAAAATACCCAACCGATTTGGGTGTTTTTGA
456 AAAAAAATTATTTTTTAAAAAAACTCCTATTTTCTAAAATACCCAACCGATTTGGGTGTTTTTGA
*
67597826 AACAAAAGCAAAAAAAGGAAAAAAGAATGGCCTTTCGGCCTTACTGCCCTGTCGATTGTGACCCA
521 AACAAAAGCAAAAAAAGGAAAAAAGAATGGCCTTTCGGCCTTACTGCCCTGTCAATTGTGACCCA
*
67597891 GGAGAAACCCTAGAGGGCTCTCAGGGCCTTGACGAACGGAGGAGACCTCCGACGATGGTGCGCGA
586 GGAGAAACCCTAGAAGGCTCTCAGGGCCTTGACGAACGGAGGAGACCTCCGACGATGGTGCGCGA
67597956 TCCGGCCACAAGTACGTTTCCTTGTTTTTTTATATTTTTGAATGT
651 TCCGGCCACAAGTACGTTTCCTTGTTTTTTTATATTTTTGAATGT
67598001 AAATAATCCCCTGTCCTAAAACGCGGTGCTTCAGCGAGGATTAAAATGAAATCAGCATAAAATTT
1 AAATAATCCCCTGTCCTAAAACGCGGTGCTTCAGCGAGGATTAAAATGAAATCAGCATAAAATTT
* *
67598066 ATGGGCCAAAACGAAAGAAAACAAAAGGGTCAGATTGCATTGCACTATAAAAGCGGAGGGGCTGA
66 ATGGGCCAAAACGAAAGAAAACAAAAGGGTCAGATTGCACTACACTATAAAAGCGGAGGGGCTGA
*
67598131 GCGCGCAAATAGCCCCTCCAGGTGCAACACGCGGATCCTCGGGGCCATCGAGTCAGGTCATGCAC
131 GCGCGCAAATAGCCCCTCCAGGTGCAACACGCGGATCCTCAGGGCCATCGAGTCAGGTCATGCAC
*
67598196 GGGTACCCCCATACGACGTCGTTTTGAGGCCACTGAAACATACCTCAAACGGCGCCGTTTTGCAT
196 GGGTACCCCCATACGACGCCGTTTTGAGGCCACTGAAACATACCTCAAACGGCGCCGTTTTGCAT
67598261 CTATTATAAAGGTAATTTTTTTAAAAAATCATTCTGCCATTAGAAAATAGAAAAAAAAACTGTTA
261 CTATTATAAAGGTAATTTTTTTAAAAAATCATTCTGCCATTAGAAAATAGAAAAAAAAACTGTTA
67598326 AAAACTCTCTCACTCTCTTCTCTTCTTCCCCAAATCTGGCTAGAGCACCGACGAGCTTTTGTGGT
326 AAAACTCTCTCACTCTCTTCTCTTCTTCCCCAAATCTGGCTAGAGCACCGACGAGCTTTTGTGGT
*
67598391 GGCTCCGCCGCATCTCCGCCCTAGCGCCGCCGTGCCGGAAGGCTGACAGACGTCCAAAACCCAAA
391 GGCTCCGCCGCATCTCCGCCCTAGCGCCGCCGTGCCAGAAGGCTGACAGACGTCCAAAACCCAAA
*
67598456 AAAAAAATTATTTTTTAAAAAAACTCCTATTTTCTAAAATACCCAACTGATTTGGGTGTTTTTGA
456 AAAAAAATTATTTTTTAAAAAAACTCCTATTTTCTAAAATACCCAACCGATTTGGGTGTTTTTGA
67598521 AACAAAAGCAAAAAAAGGAAAAAAGAATGGCCTTTCGGCCTTACTGCCCTGTCAATTGTGACCCA
521 AACAAAAGCAAAAAAAGGAAAAAAGAATGGCCTTTCGGCCTTACTGCCCTGTCAATTGTGACCCA
67598586 GGAGAAACCCTAGAAGGCTCTCAGGGCCTTGACGAACGGAGGAGACCTCCGACGATGGTGCGCGA
586 GGAGAAACCCTAGAAGGCTCTCAGGGCCTTGACGAACGGAGGAGACCTCCGACGATGGTGCGCGA
67598651 TCCGGCCACAAGTACGTTTCCTTGTTTTTTTATATTTTTGAATGT
651 TCCGGCCACAAGTACGTTTCCTTGTTTTTTTATATTTTTGAATGT
*
67598696 ATATAA
1 AAATAA
67598702 AAGAATAATA
Statistics
Matches: 681, Mismatches: 20, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
695 681 1.00
ACGTcount: A:0.31, C:0.24, G:0.21, T:0.24
Consensus pattern (695 bp):
AAATAATCCCCTGTCCTAAAACGCGGTGCTTCAGCGAGGATTAAAATGAAATCAGCATAAAATTT
ATGGGCCAAAACGAAAGAAAACAAAAGGGTCAGATTGCACTACACTATAAAAGCGGAGGGGCTGA
GCGCGCAAATAGCCCCTCCAGGTGCAACACGCGGATCCTCAGGGCCATCGAGTCAGGTCATGCAC
GGGTACCCCCATACGACGCCGTTTTGAGGCCACTGAAACATACCTCAAACGGCGCCGTTTTGCAT
CTATTATAAAGGTAATTTTTTTAAAAAATCATTCTGCCATTAGAAAATAGAAAAAAAAACTGTTA
AAAACTCTCTCACTCTCTTCTCTTCTTCCCCAAATCTGGCTAGAGCACCGACGAGCTTTTGTGGT
GGCTCCGCCGCATCTCCGCCCTAGCGCCGCCGTGCCAGAAGGCTGACAGACGTCCAAAACCCAAA
AAAAAAATTATTTTTTAAAAAAACTCCTATTTTCTAAAATACCCAACCGATTTGGGTGTTTTTGA
AACAAAAGCAAAAAAAGGAAAAAAGAATGGCCTTTCGGCCTTACTGCCCTGTCAATTGTGACCCA
GGAGAAACCCTAGAAGGCTCTCAGGGCCTTGACGAACGGAGGAGACCTCCGACGATGGTGCGCGA
TCCGGCCACAAGTACGTTTCCTTGTTTTTTTATATTTTTGAATGT
Found at i:67599382 original size:72 final size:71
Alignment explanation
Indices: 67599204--67599434 Score: 250
Period size: 72 Copynumber: 3.2 Consensus size: 71
67599194 TTACAACATT
* * * * *
67599204 TTTGTAGGGAATCTCATTGTTCATTCTTGGTTG-TTTTTGCAGGGAATCTCACTATTCATTTTTG
1 TTTGTAGGGAATCTCAATGTTCATTCTTGGTTGCTTTTGGCAGGGAATCACTCTGTTCA-TTTTG
67599268 TCTTTGC
65 TCTTTGC
* * * * **
67599275 TTGGTGGGGAACCTTAATGTTCATTCTTGGTTGCTTTTGGCAAAGAATCACTCTCGTTCATATTT
1 TTTGTAGGGAATCTCAATGTTCATTCTTGGTTGCTTTTGGCAGGGAATCACTCT-GTTCAT-TTT
67599340 GTCTTTGC
64 GTCTTTGC
* * * *
67599348 TTTGTAAGGAATCTCACTATTC-TTCTTGGTTGCTTTTGGTAGGGAATCACTCTTGTTCATTTCT
1 TTTGTAGGGAATCTCAATGTTCATTCTTGGTTGCTTTTGGCAGGGAATCACTC-TGTTCATTT-T
* *
67599412 GTTTTTGA
64 GTCTTTGC
67599420 TTTGTAGGGAATCTC
1 TTTGTAGGGAATCTC
67599435 CCCTGTTCAT
Statistics
Matches: 131, Mismatches: 24, Indels: 9
0.80 0.15 0.05
Matches are distributed among these distances:
71 30 0.23
72 70 0.53
73 31 0.24
ACGTcount: A:0.17, C:0.16, G:0.21, T:0.46
Consensus pattern (71 bp):
TTTGTAGGGAATCTCAATGTTCATTCTTGGTTGCTTTTGGCAGGGAATCACTCTGTTCATTTTGT
CTTTGC
Found at i:67600413 original size:141 final size:141
Alignment explanation
Indices: 67600206--67601216 Score: 1794
Period size: 141 Copynumber: 7.2 Consensus size: 141
67600196 CTTTACACGA
67600206 TTGCGGGGATAGCTCAGTTGGGAGAGCGTCAGACTGAAGATCTGAAGGTCGCGTGTTCGATCCAC
1 TTGCGGGGATAGCTCAGTTGGGAGAGCGTCAGACTGAAGATCTGAAGGTCGCGTGTTCGATCCAC
* * * * * *
67600271 GCTCACCGCAATTTACTTTTATTTCTATTTAAAATATTTTGATTGAAATACTAGCCATTTCCTTA
66 GCTCACCGCAATTTACTTTTTTTTCTATTTAAAGTATTTAGATTGAAATAGTAACCGTTTCCTTA
67600336 AAGCAGAGTAC
131 AAGCAGAGTAC
*
67600347 TTGCGGGGATAGCTCAGTTGGGAGAGCGTCAGACTGAAGATCTGAAGGTCGCGTGTTCGATTCAC
1 TTGCGGGGATAGCTCAGTTGGGAGAGCGTCAGACTGAAGATCTGAAGGTCGCGTGTTCGATCCAC
* * * * * *
67600412 GCTCACCGCAATTTACTTTTATTTCTATTTAAAATATTTTGATTGAAATACTAGCCATTTCCTTA
66 GCTCACCGCAATTTACTTTTTTTTCTATTTAAAGTATTTAGATTGAAATAGTAACCGTTTCCTTA
67600477 AAGCAGAGTAC
131 AAGCAGAGTAC
67600488 TTGCGGGGATAGCTCAGTTGGGAGAGCGTCAGACTGAAGATCTGAAGGTCGCGTGTTCGATCCAC
1 TTGCGGGGATAGCTCAGTTGGGAGAGCGTCAGACTGAAGATCTGAAGGTCGCGTGTTCGATCCAC
67600553 GCTCACCGCAATTTACTTTTTTTTCTATTTAAAGTATTTAGATTGAAATAGTAACCGTTTCCTTA
66 GCTCACCGCAATTTACTTTTTTTTCTATTTAAAGTATTTAGATTGAAATAGTAACCGTTTCCTTA
67600618 AAGCAGAGTAC
131 AAGCAGAGTAC
*
67600629 TTGCGGGGATAGCTCAGTTGGGAGAGCGTCAGACTGAAGATCTGAAGGTCGCGTCTTCGATCCAC
1 TTGCGGGGATAGCTCAGTTGGGAGAGCGTCAGACTGAAGATCTGAAGGTCGCGTGTTCGATCCAC
67600694 GCTCACCGCAATTTACTTTTTTTTCTATTTAAAGTATTTAGATTGAAATAGTAACCGTTTCCTTA
66 GCTCACCGCAATTTACTTTTTTTTCTATTTAAAGTATTTAGATTGAAATAGTAACCGTTTCCTTA
67600759 AAGCAGAGTAC
131 AAGCAGAGTAC
*
67600770 TTGCGGGGATAGCTCAGTTGGGAGAGCGTCAGACTGAAGATCTGAAGGTCGCGTCTTCGATCCAC
1 TTGCGGGGATAGCTCAGTTGGGAGAGCGTCAGACTGAAGATCTGAAGGTCGCGTGTTCGATCCAC
67600835 GCTCACCGCAATTTACTTTTTTTTCTATTTAAAGTATTTAGATTGAAATAGTAACCGTTTCCTTA
66 GCTCACCGCAATTTACTTTTTTTTCTATTTAAAGTATTTAGATTGAAATAGTAACCGTTTCCTTA
67600900 AAGCAGAGTAC
131 AAGCAGAGTAC
67600911 TTGCGGGGATAGCTCAGTTGGGAGAGCGTCAGACTGAAGATCTGAAGGTCGCGTGTTCGATCCAC
1 TTGCGGGGATAGCTCAGTTGGGAGAGCGTCAGACTGAAGATCTGAAGGTCGCGTGTTCGATCCAC
67600976 GCTCACCGCAATTTACTTTTTTTTCTATTTAAAGTATTTAGATTGAAATAGTAACCGTTTCCTTA
66 GCTCACCGCAATTTACTTTTTTTTCTATTTAAAGTATTTAGATTGAAATAGTAACCGTTTCCTTA
67601041 AAGCAGAGTAC
131 AAGCAGAGTAC
67601052 TTGCGGGGATAGCTCAGTTGGGAGAGCGTCAGACTGAAGATCTGAAGGTCGCGTGTTCGATCCAC
1 TTGCGGGGATAGCTCAGTTGGGAGAGCGTCAGACTGAAGATCTGAAGGTCGCGTGTTCGATCCAC
* * * *
67601117 GCTCACCGCAATTTAC-TTTTTTT-TGTTTAAAATATTTAAATTGAAATACTAACCGTTTCC-TA
66 GCTCACCGCAATTTACTTTTTTTTCTATTTAAAGTATTTAGATTGAAATAGTAACCGTTTCCTTA
**
67601179 ATAATAGAGTAC
131 A-AGCAGAGTAC
*
67601191 TCGCGGGGATAGCTCAGTTGGGAGAG
1 TTGCGGGGATAGCTCAGTTGGGAGAG
67601217 GGTCGCGTGT
Statistics
Matches: 852, Mismatches: 17, Indels: 4
0.98 0.02 0.00
Matches are distributed among these distances:
138 3 0.00
139 66 0.08
140 7 0.01
141 776 0.91
ACGTcount: A:0.27, C:0.19, G:0.23, T:0.32
Consensus pattern (141 bp):
TTGCGGGGATAGCTCAGTTGGGAGAGCGTCAGACTGAAGATCTGAAGGTCGCGTGTTCGATCCAC
GCTCACCGCAATTTACTTTTTTTTCTATTTAAAGTATTTAGATTGAAATAGTAACCGTTTCCTTA
AAGCAGAGTAC
Found at i:67615856 original size:18 final size:18
Alignment explanation
Indices: 67615835--67615879 Score: 90
Period size: 18 Copynumber: 2.5 Consensus size: 18
67615825 CATTCTTCTC
67615835 CCCTTTCCCCTTCTCCTT
1 CCCTTTCCCCTTCTCCTT
67615853 CCCTTTCCCCTTCTCCTT
1 CCCTTTCCCCTTCTCCTT
67615871 CCCTTTCCC
1 CCCTTTCCC
67615880 GTTTCGAAGC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 27 1.00
ACGTcount: A:0.00, C:0.58, G:0.00, T:0.42
Consensus pattern (18 bp):
CCCTTTCCCCTTCTCCTT
Found at i:67617076 original size:14 final size:14
Alignment explanation
Indices: 67617053--67617092 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 14
67617043 ACAGAAATGT
*
67617053 AAAACATTTTCCAG
1 AAAACATTTTACAG
* *
67617067 AAATCATTTTACGG
1 AAAACATTTTACAG
67617081 AAAACATTTTAC
1 AAAACATTTTAC
67617093 TGCCAATCAA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.42, C:0.17, G:0.07, T:0.33
Consensus pattern (14 bp):
AAAACATTTTACAG
Found at i:67617078 original size:34 final size:35
Alignment explanation
Indices: 67617018--67617083 Score: 98
Period size: 34 Copynumber: 1.9 Consensus size: 35
67617008 CAAACACCAG
* *
67617018 AAAATATTTTCCAGTAAGTCATTTTACAGAAATGT
1 AAAACATTTTCCAGTAAATCATTTTACAGAAATGT
*
67617053 AAAACATTTTCCAG-AAATCATTTTACGGAAA
1 AAAACATTTTCCAGTAAATCATTTTACAGAAA
67617084 ACATTTTACT
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
34 15 0.54
35 13 0.46
ACGTcount: A:0.42, C:0.14, G:0.11, T:0.33
Consensus pattern (35 bp):
AAAACATTTTCCAGTAAATCATTTTACAGAAATGT
Found at i:67621779 original size:2 final size:2
Alignment explanation
Indices: 67621772--67621803 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
67621762 AGCAACAACA
67621772 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
67621804 TAAAAATTAA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:67623722 original size:22 final size:24
Alignment explanation
Indices: 67623679--67623722 Score: 56
Period size: 24 Copynumber: 1.9 Consensus size: 24
67623669 ACAACAACAA
* *
67623679 TATATTTGAATATTAATATTAATT
1 TATAATTGAATATAAATATTAATT
67623703 TATAATTGAAT-TAAAT-TTAA
1 TATAATTGAATATAAATATTAA
67623723 AAATATTTTT
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
22 4 0.22
23 4 0.22
24 10 0.56
ACGTcount: A:0.45, C:0.00, G:0.05, T:0.50
Consensus pattern (24 bp):
TATAATTGAATATAAATATTAATT
Found at i:67624920 original size:20 final size:19
Alignment explanation
Indices: 67624895--67624940 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
67624885 TAGCAACTAA
67624895 TATTTAATAATTTAATAATT
1 TATTTAATAATTT-ATAATT
* *
67624915 TATTTATTTATTTATAATT
1 TATTTAATAATTTATAATT
*
67624934 TTTTTAA
1 TATTTAA
67624941 AAATAGTGAT
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
19 11 0.50
20 11 0.50
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (19 bp):
TATTTAATAATTTATAATT
Found at i:67628135 original size:22 final size:25
Alignment explanation
Indices: 67628108--67628166 Score: 72
Period size: 22 Copynumber: 2.5 Consensus size: 25
67628098 AGGCCCGACC
67628108 ATATTATTTTTAA-ATTT-AT-ATT
1 ATATTATTTTTAATATTTAATAATT
*
67628130 ATATTA-TTTTAATGTTTAATAATT
1 ATATTATTTTTAATATTTAATAATT
67628154 ATATATATTTTTA
1 ATAT-TATTTTTA
67628167 TTTATTGAAA
Statistics
Matches: 31, Mismatches: 1, Indels: 6
0.82 0.03 0.16
Matches are distributed among these distances:
21 6 0.19
22 9 0.29
23 2 0.06
24 7 0.23
25 2 0.06
26 5 0.16
ACGTcount: A:0.37, C:0.00, G:0.02, T:0.61
Consensus pattern (25 bp):
ATATTATTTTTAATATTTAATAATT
Found at i:67635123 original size:88 final size:88
Alignment explanation
Indices: 67635031--67635193 Score: 292
Period size: 88 Copynumber: 1.9 Consensus size: 88
67635021 TAAGTGAGAA
* *
67635031 TTTTTACTTTTAGTGACGTTAAAAAGTGTCACAAAAAGAGCACATTTTTTGATGTTCTAAAGCGT
1 TTTTTACTTTTAGTGACATTAAAAAGTGTCACAAAAAGAGCACATTTTGTGATGTT-TAAAGCGT
67635096 CAC-AAAATTTGATTTTTAATTTT
65 CACGAAAATTTGATTTTTAATTTT
67635119 TTTTTACTTTTAGTGACATTAAAAAGTGTCACAAAAAGAGCACATTTTGTGATGTTTAAAGCGTC
1 TTTTTACTTTTAGTGACATTAAAAAGTGTCACAAAAAGAGCACATTTTGTGATGTTTAAAGCGTC
67635184 ACGAAAATTT
66 ACGAAAATTT
67635194 TTTTTGTTAC
Statistics
Matches: 72, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
87 11 0.15
88 61 0.85
ACGTcount: A:0.34, C:0.12, G:0.15, T:0.39
Consensus pattern (88 bp):
TTTTTACTTTTAGTGACATTAAAAAGTGTCACAAAAAGAGCACATTTTGTGATGTTTAAAGCGTC
ACGAAAATTTGATTTTTAATTTT
Found at i:67648010 original size:18 final size:18
Alignment explanation
Indices: 67647987--67648025 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
67647977 CATTTAAAAC
67647987 ATATATATCTAAATATAA
1 ATATATATCTAAATATAA
* * *
67648005 ATATATTTTTATATATAA
1 ATATATATCTAAATATAA
67648023 ATA
1 ATA
67648026 AATGAAATAT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.51, C:0.03, G:0.00, T:0.46
Consensus pattern (18 bp):
ATATATATCTAAATATAA
Found at i:67653384 original size:5 final size:5
Alignment explanation
Indices: 67653352--67653412 Score: 83
Period size: 5 Copynumber: 12.8 Consensus size: 5
67653342 ATTTAACATC
**
67653352 TATAA T-TAA TATAA -ATAA T-TTT TATAA TATAA TATAA TATAA TATAA
1 TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA
67653399 TATAA TATAA TATA
1 TATAA TATAA TATA
67653413 TATTCAGGTC
Statistics
Matches: 49, Mismatches: 4, Indels: 6
0.83 0.07 0.10
Matches are distributed among these distances:
4 10 0.20
5 39 0.80
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (5 bp):
TATAA
Found at i:67669099 original size:107 final size:107
Alignment explanation
Indices: 67668867--67669179 Score: 466
Period size: 107 Copynumber: 2.9 Consensus size: 107
67668857 GAGATTTAAT
* *
67668867 AGGATATTTGGCTATTTGGTCAAATGAGAAATCGAAACCCAGCACGTTAGGGCACGTTCCCTCGA
1 AGGATATTTGGCTATTTGGTCAAACGAGAAATCGAAACCCAGCACGTTAGGGCACGTTTCCTCGA
* ** **
67668932 A-TTTCCAAACGCAAAATATTGCCTTACCTTGAAAATTTGAA
66 ATTTTCCAAACGAAAAATATTGCCTTATTTTGAAAATTAAAA
* * *
67668973 AGGATATTTGGCTATTTGGTCGAGCGAGAAATCGAAACCCAGCACGTTAGGGCACGTTTTCTCGA
1 AGGATATTTGGCTATTTGGTCAAACGAGAAATCGAAACCCAGCACGTTAGGGCACGTTTCCTCGA
* * *
67669038 ATTTTTCAAACGTAAAATATTGCCTTATTTTGAAAGTTAAAA
66 ATTTTCCAAACGAAAAATATTGCCTTATTTTGAAAATTAAAA
* *
67669080 ATGATATTTGGCTATTTGGTCAAACGAGAAATCGAAACCCAGCACGTTAGGGCACGTTTGCTCGA
1 AGGATATTTGGCTATTTGGTCAAACGAGAAATCGAAACCCAGCACGTTAGGGCACGTTTCCTCGA
*
67669145 ATTTTCCAAACGCAAAAATATTGCATTATTTTGAA
66 ATTTTCCAAACG-AAAAATATTGCCTTATTTTGAA
67669180 TTTGAATGAA
Statistics
Matches: 186, Mismatches: 19, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
106 61 0.33
107 105 0.56
108 20 0.11
ACGTcount: A:0.33, C:0.18, G:0.19, T:0.30
Consensus pattern (107 bp):
AGGATATTTGGCTATTTGGTCAAACGAGAAATCGAAACCCAGCACGTTAGGGCACGTTTCCTCGA
ATTTTCCAAACGAAAAATATTGCCTTATTTTGAAAATTAAAA
Found at i:67671616 original size:22 final size:21
Alignment explanation
Indices: 67671591--67671655 Score: 53
Period size: 22 Copynumber: 3.1 Consensus size: 21
67671581 CAATAACAAT
67671591 AAAACAGTAATAATATAATAGC
1 AAAACAGTAA-AATATAATAGC
* * * * *
67671613 AAAATAATGAAAAAATAGTGGC
1 AAAACAGT-AAAATATAATAGC
67671635 AAAACAGTAAAA-AT-ATAGC
1 AAAACAGTAAAATATAATAGC
67671654 AA
1 AA
67671656 CAAATTTTTT
Statistics
Matches: 33, Mismatches: 9, Indels: 5
0.70 0.19 0.11
Matches are distributed among these distances:
19 5 0.15
20 2 0.06
21 4 0.12
22 20 0.61
23 2 0.06
ACGTcount: A:0.62, C:0.08, G:0.12, T:0.18
Consensus pattern (21 bp):
AAAACAGTAAAATATAATAGC
Found at i:67681437 original size:14 final size:14
Alignment explanation
Indices: 67681418--67681447 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
67681408 TATATCACTT
67681418 TCACTCAAATCATG
1 TCACTCAAATCATG
67681432 TCACTCAAATCATG
1 TCACTCAAATCATG
67681446 TC
1 TC
67681448 GGTGAGTAAG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.33, C:0.30, G:0.07, T:0.30
Consensus pattern (14 bp):
TCACTCAAATCATG
Found at i:67683647 original size:31 final size:29
Alignment explanation
Indices: 67683574--67683647 Score: 76
Period size: 29 Copynumber: 2.5 Consensus size: 29
67683564 GACTCAAGTT
*
67683574 ACATTTTAGTCACTTATGTTTGAAATGTT
1 ACATTTTAGTCACTTATGTTTGAAATGTA
* * * **
67683603 ACGTTTTACTCACTTATGTTATTATGTTGTA
1 ACATTTTAGTCACTTATGTT-TGA-AATGTA
67683634 ACATTTTAGTCACT
1 ACATTTTAGTCACT
67683648 GAGCTGTTAA
Statistics
Matches: 35, Mismatches: 8, Indels: 2
0.78 0.18 0.04
Matches are distributed among these distances:
29 18 0.51
30 2 0.06
31 15 0.43
ACGTcount: A:0.26, C:0.14, G:0.12, T:0.49
Consensus pattern (29 bp):
ACATTTTAGTCACTTATGTTTGAAATGTA
Found at i:67684656 original size:26 final size:26
Alignment explanation
Indices: 67684626--67684682 Score: 80
Period size: 26 Copynumber: 2.2 Consensus size: 26
67684616 TATTATTTTA
67684626 ATTTAATAT-TTAATAATTTTATATAT
1 ATTTAATATATTAA-AATTTTATATAT
* *
67684652 TTTTAATTTATTAAAATTTTATATAT
1 ATTTAATATATTAAAATTTTATATAT
67684678 ATTTA
1 ATTTA
67684683 TCTTACCATT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
26 23 0.85
27 4 0.15
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (26 bp):
ATTTAATATATTAAAATTTTATATAT
Found at i:67684658 original size:16 final size:16
Alignment explanation
Indices: 67684612--67684660 Score: 50
Period size: 16 Copynumber: 3.1 Consensus size: 16
67684602 AAACAATATA
67684612 TTTATAT-TATTTTAA-
1 TTTATATAT-TTTTAAT
*
67684627 TTTA-ATATTTAATAAT
1 TTTATATATTT-TTAAT
67684643 TTTATATATTTTTAAT
1 TTTATATATTTTTAAT
67684659 TT
1 TT
67684661 ATTAAAATTT
Statistics
Matches: 28, Mismatches: 2, Indels: 7
0.76 0.05 0.19
Matches are distributed among these distances:
14 4 0.14
15 8 0.29
16 10 0.36
17 6 0.21
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (16 bp):
TTTATATATTTTTAAT
Found at i:67684661 original size:15 final size:15
Alignment explanation
Indices: 67684611--67684662 Score: 54
Period size: 15 Copynumber: 3.4 Consensus size: 15
67684601 TAAACAATAT
67684611 ATTTATAT-TATTTTA
1 ATTTATATAT-TTTTA
*
67684626 ATTTA-ATATTTAATA
1 ATTTATATATTT-TTA
67684641 ATTTTATATATTTTTA
1 A-TTTATATATTTTTA
67684657 ATTTAT
1 ATTTAT
67684663 TAAAATTTTA
Statistics
Matches: 31, Mismatches: 2, Indels: 8
0.76 0.05 0.20
Matches are distributed among these distances:
14 4 0.13
15 14 0.45
16 7 0.23
17 6 0.19
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (15 bp):
ATTTATATATTTTTA
Found at i:67687220 original size:5 final size:5
Alignment explanation
Indices: 67687210--67687244 Score: 52
Period size: 5 Copynumber: 7.0 Consensus size: 5
67687200 TTGGATTTGT
* *
67687210 CTAGC CTAGC CTAGC CTAGC CTAAC CTAGC GTAGC
1 CTAGC CTAGC CTAGC CTAGC CTAGC CTAGC CTAGC
67687245 AGTAGTATTC
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
5 27 1.00
ACGTcount: A:0.23, C:0.37, G:0.20, T:0.20
Consensus pattern (5 bp):
CTAGC
Found at i:67694341 original size:19 final size:19
Alignment explanation
Indices: 67694317--67694358 Score: 59
Period size: 19 Copynumber: 2.2 Consensus size: 19
67694307 TATATAATTA
67694317 AATTTC-TATATAAATATTT
1 AATTTCGTA-ATAAATATTT
*
67694336 AATTTCGTAATAAATTTTT
1 AATTTCGTAATAAATATTT
67694355 AATT
1 AATT
67694359 AAAATAAAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 19 0.90
20 2 0.10
ACGTcount: A:0.40, C:0.05, G:0.02, T:0.52
Consensus pattern (19 bp):
AATTTCGTAATAAATATTT
Found at i:67694364 original size:17 final size:17
Alignment explanation
Indices: 67694344--67694378 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
67694334 TTAATTTCGT
* *
67694344 AATAAATTTTTAATTAA
1 AATAAAATTTTAACTAA
67694361 AATAAAATTTTAACTAA
1 AATAAAATTTTAACTAA
67694378 A
1 A
67694379 CTGTATTAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.57, C:0.03, G:0.00, T:0.40
Consensus pattern (17 bp):
AATAAAATTTTAACTAA
Found at i:67696818 original size:19 final size:19
Alignment explanation
Indices: 67696766--67696820 Score: 76
Period size: 19 Copynumber: 2.9 Consensus size: 19
67696756 ATCCTATTTC
*
67696766 TAAATATGT-AAAAATAAA
1 TAAATAAGTAAAAAATAAA
**
67696784 TAAATAAGTACCAAATAAA
1 TAAATAAGTAAAAAATAAA
67696803 TAAATAAGTAAAAAATAA
1 TAAATAAGTAAAAAATAA
67696821 TTTGTAAAAA
Statistics
Matches: 31, Mismatches: 5, Indels: 1
0.84 0.14 0.03
Matches are distributed among these distances:
18 8 0.26
19 23 0.74
ACGTcount: A:0.67, C:0.04, G:0.05, T:0.24
Consensus pattern (19 bp):
TAAATAAGTAAAAAATAAA
Found at i:67696990 original size:11 final size:11
Alignment explanation
Indices: 67696970--67697007 Score: 58
Period size: 11 Copynumber: 3.5 Consensus size: 11
67696960 AGTCCGGCCC
67696970 ATATTAAATAT
1 ATATTAAATAT
*
67696981 ATATTTAATAT
1 ATATTAAATAT
*
67696992 ATATAAAATAT
1 ATATTAAATAT
67697003 ATATT
1 ATATT
67697008 TAATTAAAAA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
11 23 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (11 bp):
ATATTAAATAT
Found at i:67721425 original size:19 final size:20
Alignment explanation
Indices: 67721401--67721438 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
67721391 TTAGGTAAAT
67721401 AAAT-AAAAATTACATAATA
1 AAATAAAAAATTACATAATA
67721420 AAATAAAAAATTACATAAT
1 AAATAAAAAATTACATAAT
67721439 TTTAAATTTA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 4 0.22
20 14 0.78
ACGTcount: A:0.68, C:0.05, G:0.00, T:0.26
Consensus pattern (20 bp):
AAATAAAAAATTACATAATA
Found at i:67722895 original size:17 final size:16
Alignment explanation
Indices: 67722862--67722895 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
67722852 ATTGATAATA
*
67722862 TTAATTTTTAATTGAT
1 TTAATTTTTAATGGAT
67722878 TTAATTTTTCAATGGAT
1 TTAATTTTT-AATGGAT
67722895 T
1 T
67722896 ATCAAATAGG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 9 0.56
17 7 0.44
ACGTcount: A:0.29, C:0.03, G:0.09, T:0.59
Consensus pattern (16 bp):
TTAATTTTTAATGGAT
Found at i:67723045 original size:24 final size:24
Alignment explanation
Indices: 67723000--67723046 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
67722990 CTTAATATAG
* *
67723000 TTTTGCATGTCATGTATGTTTTAT
1 TTTTGCATGTCATCTATATTTTAT
67723024 TTTTGC-TGTCATCTCATATTTTA
1 TTTTGCATGTCATCT-ATATTTTA
67723047 ATTAAATTTC
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 7 0.35
24 13 0.65
ACGTcount: A:0.17, C:0.13, G:0.13, T:0.57
Consensus pattern (24 bp):
TTTTGCATGTCATCTATATTTTAT
Found at i:67726307 original size:15 final size:16
Alignment explanation
Indices: 67726287--67726327 Score: 66
Period size: 15 Copynumber: 2.6 Consensus size: 16
67726277 ATAATAGGGG
67726287 TTTTAATTAGAAAG-A
1 TTTTAATTAGAAAGAA
67726302 TTTTAATTAGAAAGAAA
1 TTTTAATTAGAAAG-AA
67726319 TTTTAATTA
1 TTTTAATTA
67726328 ATCAACCTAG
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
15 14 0.58
17 10 0.42
ACGTcount: A:0.46, C:0.00, G:0.10, T:0.44
Consensus pattern (16 bp):
TTTTAATTAGAAAGAA
Found at i:67726888 original size:5 final size:5
Alignment explanation
Indices: 67726878--67726916 Score: 78
Period size: 5 Copynumber: 7.8 Consensus size: 5
67726868 TTAAATAATA
67726878 TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATA
1 TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATA
67726917 AAATAAGATT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 34 1.00
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (5 bp):
TATAT
Found at i:67730271 original size:18 final size:18
Alignment explanation
Indices: 67730248--67730283 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
67730238 AATTAATCAA
67730248 CCTAGAGCCAATTTCTCT
1 CCTAGAGCCAATTTCTCT
* *
67730266 CCTAGAGTCAGTTTCTCT
1 CCTAGAGCCAATTTCTCT
67730284 TGCTCTGGAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.19, C:0.31, G:0.14, T:0.36
Consensus pattern (18 bp):
CCTAGAGCCAATTTCTCT
Found at i:67731990 original size:109 final size:109
Alignment explanation
Indices: 67731787--67732101 Score: 469
Period size: 108 Copynumber: 2.9 Consensus size: 109
67731777 AAAATTCAAG
* *
67731787 AGGATATTTGGCTATTTGGTTAAACGAG--AAATCGAAACCCAGCACATTAGGGCACG-TTCCTC
1 AGGATATTTGGCTATTTGGTTGAACGAGAAAAATCGAAACCCAGCACATTAGGGCACGTTTTCTC
* *
67731849 GAATTTTCAAATGCAAAACATTGCCTTATTTTGAAATTTTTGAAA
66 GAATTTCCAAACGCAAAACATTGCCTTATTTTGAAATTTTT-AAA
*
67731894 A-GATATTTGGCTATTTGGTTGAACGAGAAAAATCGAAACCCAGCACATTAGGGTACGTTTTCTC
1 AGGATATTTGGCTATTTGGTTGAACGAGAAAAATCGAAACCCAGCACATTAGGGCACGTTTTCTC
*
67731958 GAATTTCCAAACGCAAAACATTACCTTATTTTGAAATTTTTAAA
66 GAATTTCCAAACGCAAAACATTGCCTTATTTTGAAATTTTTAAA
* *
67732002 AGGATACTTAGCTATTTGGTTGAACGA-AAAAATCGAAACCCAGCACATTAGGGCACGTTTTCTC
1 AGGATATTTGGCTATTTGGTTGAACGAGAAAAATCGAAACCCAGCACATTAGGGCACGTTTTCTC
* * * * *
67732066 GAATTTCTAAACACAAAATATTGCCTCATTTAGAAA
66 GAATTTCCAAACGCAAAACATTGCCTTATTTTGAAA
67732102 AATTTTCCTT
Statistics
Matches: 189, Mismatches: 15, Indels: 7
0.90 0.07 0.03
Matches are distributed among these distances:
106 25 0.13
107 1 0.01
108 97 0.51
109 66 0.35
ACGTcount: A:0.35, C:0.17, G:0.17, T:0.31
Consensus pattern (109 bp):
AGGATATTTGGCTATTTGGTTGAACGAGAAAAATCGAAACCCAGCACATTAGGGCACGTTTTCTC
GAATTTCCAAACGCAAAACATTGCCTTATTTTGAAATTTTTAAA
Found at i:67733771 original size:23 final size:21
Alignment explanation
Indices: 67733721--67733771 Score: 50
Period size: 23 Copynumber: 2.3 Consensus size: 21
67733711 ATTTGGGCTG
67733721 TGGGTTAGTTTGGGCTGTTAAT
1 TGGGTTAGTTTGGGCTGTT-AT
*
67733743 TTGGTTATGTTTAGGGTCTGTT-T
1 TGGGTTA-GTTT-GGG-CTGTTAT
67733766 TGGGTT
1 TGGGTT
67733772 GGGGTGTTTA
Statistics
Matches: 24, Mismatches: 2, Indels: 5
0.77 0.06 0.16
Matches are distributed among these distances:
22 6 0.25
23 10 0.42
24 3 0.12
25 5 0.21
ACGTcount: A:0.10, C:0.04, G:0.35, T:0.51
Consensus pattern (21 bp):
TGGGTTAGTTTGGGCTGTTAT
Found at i:67734236 original size:47 final size:47
Alignment explanation
Indices: 67734140--67734236 Score: 106
Period size: 47 Copynumber: 2.1 Consensus size: 47
67734130 CTTGATTTTA
* * * * * **
67734140 GCAAGTGAAATACCTTAAAGGCTAATAGTTTTGTTAAAGGGATTTTT
1 GCAAGTGAAATACCTTAAAGGCTAAAAGTTGTATTAAAAGCATAATT
*
67734187 GCAAGTGAAATACCTTAAAGGCTAAAAGTTGTATTAGAAATCA-AATT
1 GCAAGTGAAATACCTTAAAGGCTAAAAGTTGTATTA-AAAGCATAATT
67734234 GCA
1 GCA
67734237 TTTTGATGTT
Statistics
Matches: 41, Mismatches: 8, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
47 38 0.93
48 3 0.07
ACGTcount: A:0.39, C:0.10, G:0.20, T:0.31
Consensus pattern (47 bp):
GCAAGTGAAATACCTTAAAGGCTAAAAGTTGTATTAAAAGCATAATT
Found at i:67748031 original size:37 final size:37
Alignment explanation
Indices: 67747984--67748101 Score: 218
Period size: 37 Copynumber: 3.2 Consensus size: 37
67747974 CCGAATGCAC
67747984 ATATACACTTATATCCACCTATGCCGAATGCATACAT
1 ATATACACTTATATCCACCTATGCCGAATGCATACAT
67748021 ATATACACTTATATCCACCTATGCCGAATGCATACAT
1 ATATACACTTATATCCACCTATGCCGAATGCATACAT
* *
67748058 ATATATATTTATATCCACCTATGCCGAATGCATACAT
1 ATATACACTTATATCCACCTATGCCGAATGCATACAT
67748095 ATATACA
1 ATATACA
67748102 TATATATACA
Statistics
Matches: 78, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 78 1.00
ACGTcount: A:0.36, C:0.25, G:0.08, T:0.31
Consensus pattern (37 bp):
ATATACACTTATATCCACCTATGCCGAATGCATACAT
Found at i:67748108 original size:37 final size:36
Alignment explanation
Indices: 67747972--67748108 Score: 208
Period size: 37 Copynumber: 3.8 Consensus size: 36
67747962 CAACTATAAG
*
67747972 TGCCGAATGC--ACATATACAC-TTATATCCACCTA
1 TGCCGAATGCATACATATATACATTATATCCACCTA
67748005 TGCCGAATGCATACATATATACACTTATATCCACCTA
1 TGCCGAATGCATACATATATACA-TTATATCCACCTA
*
67748042 TGCCGAATGCATACATATATATATTTATATCCACCTA
1 TGCCGAATGCATACATATATACA-TTATATCCACCTA
67748079 TGCCGAATGCATACATATATACATATATAT
1 TGCCGAATGCATACATATATACAT-TATAT
67748109 ACATCCAACA
Statistics
Matches: 95, Mismatches: 4, Indels: 6
0.90 0.04 0.06
Matches are distributed among these distances:
33 10 0.11
35 9 0.09
36 1 0.01
37 75 0.79
ACGTcount: A:0.36, C:0.24, G:0.09, T:0.31
Consensus pattern (36 bp):
TGCCGAATGCATACATATATACATTATATCCACCTA
Found at i:67748350 original size:41 final size:41
Alignment explanation
Indices: 67748285--67748512 Score: 300
Period size: 41 Copynumber: 5.6 Consensus size: 41
67748275 TTTAAACAGA
* * * *
67748285 TTCACTGGCACTTCA-CCTGATAGGCTTATAGTCTAATTTC-G
1 TTCACCGGCACTT-AGCCTGCTAGGCTTATAGCCTGA-TTCAG
* * * *
67748326 TTCACTGTCACTTAGCGTGCTAGGCCTATAGCCTGATTCAG
1 TTCACCGGCACTTAGCCTGCTAGGCTTATAGCCTGATTCAG
*
67748367 TTCACCGGCACTTAGCCTGCTAGGCTTGTAGCCTGATTCAG
1 TTCACCGGCACTTAGCCTGCTAGGCTTATAGCCTGATTCAG
*
67748408 TTCACCGGCACTTAGCCTGCTAGGCTTGTAGCCTGATTCAG
1 TTCACCGGCACTTAGCCTGCTAGGCTTATAGCCTGATTCAG
* *
67748449 TTCACCGGCACTTAGCCTGCTAGACGTATAGTCC-GATTCAG
1 TTCACCGGCACTTAGCCTGCTAGGCTTATAG-CCTGATTCAG
67748490 TTCACCGGCACTTAGCCTGCTAG
1 TTCACCGGCACTTAGCCTGCTAG
67748513 ACGTATAGTC
Statistics
Matches: 170, Mismatches: 14, Indels: 6
0.89 0.07 0.03
Matches are distributed among these distances:
40 4 0.02
41 164 0.96
42 2 0.01
ACGTcount: A:0.19, C:0.29, G:0.22, T:0.30
Consensus pattern (41 bp):
TTCACCGGCACTTAGCCTGCTAGGCTTATAGCCTGATTCAG
Found at i:67748535 original size:123 final size:123
Alignment explanation
Indices: 67748285--67748540 Score: 311
Period size: 123 Copynumber: 2.1 Consensus size: 123
67748275 TTTAAACAGA
* * * * *
67748285 TTCACTGGCACTTCACCTGATAGGCTTATAGTCTAATTTCGTTCACTGTCACTTAGCGTGCTAGG
1 TTCACTGGCACTTCACCTGATAGGCTTATAGCCTAATTTCGTTCACCGGCACTTAGCCTGCTAGA
* * * * *
67748350 CCTATAGCCTGATTCAGTTCACCGGCACTTAGCCTGCTAGGCTTGTAGCCTGATTCAG
66 CCTATAGCCTGATTCAGTTCACCGGCACTTAGCCTGCTAGACGTATAGCCTGAATAAG
* * * *
67748408 TTCACCGGCACTT-AGCCTGCTAGGCTTGTAGCCTGA-TTCAGTTCACCGGCACTTAGCCTGCTA
1 TTCACTGGCACTTCA-CCTGATAGGCTTATAGCCTAATTTC-GTTCACCGGCACTTAGCCTGCTA
* * *
67748471 GACGTATAGTCC-GATTCAGTTCACCGGCACTTAGCCTGCTAGACGTATAGTCTGAATAAT
64 GACCTATAG-CCTGATTCAGTTCACCGGCACTTAGCCTGCTAGACGTATAGCCTGAATAAG
67748531 TTCACTGGCA
1 TTCACTGGCA
67748541 ATAAATTCGA
Statistics
Matches: 112, Mismatches: 18, Indels: 6
0.82 0.13 0.04
Matches are distributed among these distances:
122 4 0.04
123 106 0.95
124 2 0.02
ACGTcount: A:0.21, C:0.27, G:0.21, T:0.30
Consensus pattern (123 bp):
TTCACTGGCACTTCACCTGATAGGCTTATAGCCTAATTTCGTTCACCGGCACTTAGCCTGCTAGA
CCTATAGCCTGATTCAGTTCACCGGCACTTAGCCTGCTAGACGTATAGCCTGAATAAG
Found at i:67752975 original size:63 final size:63
Alignment explanation
Indices: 67752877--67753052 Score: 219
Period size: 63 Copynumber: 2.8 Consensus size: 63
67752867 TGTGGTAGGC
* * * * *
67752877 CGTGTGTCCAGGCCATGTGGCTCACTATTTGCCATT-AGGAACCACACGGGCCAGGGACACGGG
1 CGTGTGTCCAGGCCATGTGACTCACTGTTTTCCATTAAGG-ACCACACGGGCCAGAGACACGAG
* * * * *
67752940 CGTGTATCCAGGCCGTGTGACTTACTGTTTTCCATTAAGGACCACACAGGCCATAGACACGAG
1 CGTGTGTCCAGGCCATGTGACTCACTGTTTTCCATTAAGGACCACACGGGCCAGAGACACGAG
* * *
67753003 TGTGTGTCCAAGCCATGTGACTCACTGTTTTCCATTAAGGACTACACGGG
1 CGTGTGTCCAGGCCATGTGACTCACTGTTTTCCATTAAGGACCACACGGG
67753053 AAAATGACAC
Statistics
Matches: 95, Mismatches: 17, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
63 92 0.97
64 3 0.03
ACGTcount: A:0.23, C:0.27, G:0.27, T:0.24
Consensus pattern (63 bp):
CGTGTGTCCAGGCCATGTGACTCACTGTTTTCCATTAAGGACCACACGGGCCAGAGACACGAG
Found at i:67755037 original size:14 final size:14
Alignment explanation
Indices: 67754996--67755037 Score: 54
Period size: 14 Copynumber: 3.1 Consensus size: 14
67754986 TTTCAATAAT
67754996 TTTTAATATAAATA
1 TTTTAATATAAATA
67755010 TTTT--TA-ACAATA
1 TTTTAATATA-AATA
67755022 TTTTAATATAAATA
1 TTTTAATATAAATA
67755036 TT
1 TT
67755038 ATATTAACCC
Statistics
Matches: 24, Mismatches: 0, Indels: 8
0.75 0.00 0.25
Matches are distributed among these distances:
11 1 0.04
12 10 0.42
14 12 0.50
15 1 0.04
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.52
Consensus pattern (14 bp):
TTTTAATATAAATA
Found at i:67760519 original size:20 final size:20
Alignment explanation
Indices: 67760494--67760563 Score: 61
Period size: 20 Copynumber: 3.4 Consensus size: 20
67760484 TAATGGAAAG
67760494 AAATCAAAAGATTGAGAATC
1 AAATCAAAAGATTGAGAATC
* **
67760514 AAATCAAAGCAAAATATG-GAAGG
1 AAATC-AA--AAGAT-TGAGAATC
*
67760537 AAATCAAGAGATTGAGAATC
1 AAATCAAAAGATTGAGAATC
67760557 AAATCAA
1 AAATCAA
67760564 TGTAAACATG
Statistics
Matches: 38, Mismatches: 7, Indels: 10
0.69 0.13 0.18
Matches are distributed among these distances:
19 2 0.05
20 18 0.47
21 2 0.05
22 2 0.05
23 12 0.32
24 2 0.05
ACGTcount: A:0.56, C:0.10, G:0.17, T:0.17
Consensus pattern (20 bp):
AAATCAAAAGATTGAGAATC
Found at i:67761455 original size:2 final size:2
Alignment explanation
Indices: 67761450--67761546 Score: 74
Period size: 2 Copynumber: 49.5 Consensus size: 2
67761440 TTTGTTACCT
* ** * * *
67761450 TA TA TA TA TA TA TA TG TA CG TA CA TA TA T- TA TA CTT TC TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA -TA TA TA TA
* * *
67761492 CA TA T- TT TA TA -A TT TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
*
67761532 TA TA TA TA CA TA TA T
1 TA TA TA TA TA TA TA T
67761547 GCAATCATTA
Statistics
Matches: 73, Mismatches: 18, Indels: 8
0.74 0.18 0.08
Matches are distributed among these distances:
1 3 0.04
2 69 0.95
3 1 0.01
ACGTcount: A:0.42, C:0.06, G:0.02, T:0.49
Consensus pattern (2 bp):
TA
Found at i:67762287 original size:98 final size:98
Alignment explanation
Indices: 67762173--67762369 Score: 340
Period size: 98 Copynumber: 2.0 Consensus size: 98
67762163 TTTAAAATCA
* * *
67762173 TAAAGGAAATATTCCGAGTTTGGGATTTTAAAGGAATTGTGCCCTAACGTATTGGGTGTGATTTC
1 TAAAGGAAATATTCCGAGTTTGGGATTCTAAAGGAATCGTGCCCTAACGTATTGGGTGTAATTTC
* *
67762238 TTAAATCTTGGATAAGTGGATGTTCTTTTAAAG
66 TTAAATCTTGGATAAGCGGATATTCTTTTAAAG
*
67762271 TAAAGGAAATATTCCGAGTTTGGGATTCTAGAGGAATCGTGCCCTAACGTATTGGGTGTAATTTC
1 TAAAGGAAATATTCCGAGTTTGGGATTCTAAAGGAATCGTGCCCTAACGTATTGGGTGTAATTTC
67762336 TTAAATCTTGGATAAGCGGATATTCTTTTAAAG
66 TTAAATCTTGGATAAGCGGATATTCTTTTAAAG
67762369 T
1 T
67762370 TTTATTGTAC
Statistics
Matches: 93, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
98 93 1.00
ACGTcount: A:0.29, C:0.11, G:0.24, T:0.37
Consensus pattern (98 bp):
TAAAGGAAATATTCCGAGTTTGGGATTCTAAAGGAATCGTGCCCTAACGTATTGGGTGTAATTTC
TTAAATCTTGGATAAGCGGATATTCTTTTAAAG
Found at i:67763099 original size:20 final size:20
Alignment explanation
Indices: 67763074--67763111 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
67763064 TTTTTTCCAA
*
67763074 TCATTAGGTTACATTTTAAT
1 TCATTACGTTACATTTTAAT
67763094 TCATTACGTTACATTTTA
1 TCATTACGTTACATTTTA
67763112 GTAAAGATTG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.29, C:0.13, G:0.08, T:0.50
Consensus pattern (20 bp):
TCATTACGTTACATTTTAAT
Found at i:67763702 original size:114 final size:114
Alignment explanation
Indices: 67763355--67763932 Score: 502
Period size: 113 Copynumber: 5.1 Consensus size: 114
67763345 CCTGAAGAAC
* *
67763355 TAGTGGCGTTTCTAAAAAAACGCCGTAAAAGAACATAATTAGTGGCGTTTA-TTGTAAGCGCCGC
1 TAGTGGCGTTTTTAAAAAAACGCCGTAAAAGAACATAATTAGTGGCGTTTATTTGGAAGCGCCGC
* *
67763419 AAAATACCTTAACCAAAACGCAGCG-TTGGTTCAATGTATATTAGA-AT
66 AAAATACCTTAACCAAAACGCAGCGTTTGGTTCAAGGTAGATTAGATAT
** * * *****
67763466 TCA-TGGCGTTTTTTATAAAAAACGCCGCGAAAGAATAGT-ATTAGCGGCGTTTAACAAAAAGCG
1 T-AGTGGCG-TTTTTA-AAAAAACGCCGTAAAAGAACA-TAATTAGTGGCGTTTATTTGGAAGCG
* ** * ** **
67763529 CCGC-AAATATCTTAAGGAAAACGCACCGTTTTATCTTGAGGTAGATTA-ATAT
62 CCGCAAAATACCTTAACCAAAACGCAGCGTTTGGT-TCAAGGTAGATTAGATAT
*
67763581 TAGTGGCGTTTTTAAAAAAACGCCGTAAAAGAACATAATTAGTGGCGTTTATTTGGATGCGCCGC
1 TAGTGGCGTTTTTAAAAAAACGCCGTAAAAGAACATAATTAGTGGCGTTTATTTGGAAGCGCCGC
* * *
67763646 AAAATACCTTAACCAAAACGCAGCGTTTGGTTCAATTGTATATTAGACAT
66 AAAATACCTTAACCAAAACGCAGCGTTTGGTTCAA-GGTAGATTAGATAT
* * * * * * *
67763696 T-GTGGCGTTTTCT-ATAAAACACCGCAAAAGAATAGT-ATTAGCGACG-TT-TTCGGTAAAGCG
1 TAGTGGCGTTTT-TAAAAAAACGCCGTAAAAGAACA-TAATTAGTGGCGTTTATTTGG--AAGCG
* * ** * * * **
67763756 CCAC-AAATATCTTAATGAAAATGCACCGTTTCGTCTTGAGGTAGATTAG-TAT
62 CCGCAAAATACCTTAACCAAAACGCAGCGTTTGGT-TCAAGGTAGATTAGATAT
* * ** *
67763808 TAGTGGCATTTTTAGAAAAACGCCGTAAAAGAACATAATTAGTGGCGTTTATTTTTATGCGCCGC
1 TAGTGGCGTTTTTAAAAAAACGCCGTAAAAGAACATAATTAGTGGCGTTTATTTGGAAGCGCCGC
** *
67763873 AAAATACCTTAACCAAAACGCAGCGTTTGGTTTTGAGGTATATTAGA-AT
66 AAAATACCTTAACCAAAACGCAGCGTTTGG-TTCAAGGTAGATTAGATAT
67763922 TAGTGGCGTTT
1 TAGTGGCGTTT
67763933 ACGATAAAAC
Statistics
Matches: 360, Mismatches: 81, Indels: 49
0.73 0.17 0.10
Matches are distributed among these distances:
111 6 0.02
112 16 0.04
113 166 0.46
114 146 0.41
115 26 0.07
ACGTcount: A:0.34, C:0.16, G:0.20, T:0.30
Consensus pattern (114 bp):
TAGTGGCGTTTTTAAAAAAACGCCGTAAAAGAACATAATTAGTGGCGTTTATTTGGAAGCGCCGC
AAAATACCTTAACCAAAACGCAGCGTTTGGTTCAAGGTAGATTAGATAT
Found at i:67763942 original size:227 final size:226
Alignment explanation
Indices: 67763355--67763942 Score: 862
Period size: 227 Copynumber: 2.6 Consensus size: 226
67763345 CCTGAAGAAC
* *
67763355 TAGTGGCGTTTCTAAAAAAACGCCGTAAAAGAACATAATTAGTGGCGTTTA-TTGTAAGCGCCGC
1 TAGTGGCGTTTTTAAAAAAACGCCGTAAAAGAACATAATTAGTGGCGTTTATTTGTATGCGCCGC
*
67763419 AAAATACCTTAACCAAAACGCAGCG-TTGGTTCAATGTATATTAGAATTCA-TGGCGTTTTTTAT
66 AAAATACCTTAACCAAAACGCAGCGTTTGGTTCAATGTATATTAGAATT-AGTGGCGTTTTCTAT
* * * *
67763482 AAAAAACGCCGCGAAAGAATAGTATTAGCGGCGTTTAACAAAAAGCGCCGCAAATATCTTAAGGA
130 --AAAACACCGCAAAAGAATAGTATTAGCGACGTTTAACAAAAAGCGCCACAAATATCTTAAGGA
*
67763547 AAACGCACCGTTTTATCTTGAGGTAGATTAATAT
193 AAACGCACCGTTTCATCTTGAGGTAGATTAATAT
*
67763581 TAGTGGCGTTTTTAAAAAAACGCCGTAAAAGAACATAATTAGTGGCGTTTATTTGGATGCGCCGC
1 TAGTGGCGTTTTTAAAAAAACGCCGTAAAAGAACATAATTAGTGGCGTTTATTTGTATGCGCCGC
67763646 AAAATACCTTAACCAAAACGCAGCGTTTGGTTCAATTGTATATTAGACATT-GTGGCGTTTTCTA
66 AAAATACCTTAACCAAAACGCAGCGTTTGGTTCAA-TGTATATTAGA-ATTAGTGGCGTTTTCTA
* ** *
67763710 TAAAACACCGCAAAAGAATAGTATTAGCGACGTTT-TCGGTAAAGCGCCACAAATATCTTAATGA
129 TAAAACACCGCAAAAGAATAGTATTAGCGACGTTTAAC-AAAAAGCGCCACAAATATCTTAAGGA
* * *
67763774 AAATGCACCGTTTCGTCTTGAGGTAGATTAGTAT
193 AAACGCACCGTTTCATCTTGAGGTAGATTAATAT
* * *
67763808 TAGTGGCATTTTTAGAAAAACGCCGTAAAAGAACATAATTAGTGGCGTTTATTTTTATGCGCCGC
1 TAGTGGCGTTTTTAAAAAAACGCCGTAAAAGAACATAATTAGTGGCGTTTATTTGTATGCGCCGC
** * * *
67763873 AAAATACCTTAACCAAAACGCAGCGTTTGGTTTTGAGGTATATTAGAATTAGTGGCGTTTACGAT
66 AAAATACCTTAACCAAAACGCAGCGTTTGG-TTCAATGTATATTAGAATTAGTGGCGTTTTCTAT
67763938 AAAAC
130 AAAAC
67763943 GCCACAAATA
Statistics
Matches: 329, Mismatches: 25, Indels: 15
0.89 0.07 0.04
Matches are distributed among these distances:
226 54 0.16
227 237 0.72
228 12 0.04
229 23 0.07
230 3 0.01
ACGTcount: A:0.34, C:0.16, G:0.20, T:0.29
Consensus pattern (226 bp):
TAGTGGCGTTTTTAAAAAAACGCCGTAAAAGAACATAATTAGTGGCGTTTATTTGTATGCGCCGC
AAAATACCTTAACCAAAACGCAGCGTTTGGTTCAATGTATATTAGAATTAGTGGCGTTTTCTATA
AAACACCGCAAAAGAATAGTATTAGCGACGTTTAACAAAAAGCGCCACAAATATCTTAAGGAAAA
CGCACCGTTTCATCTTGAGGTAGATTAATAT
Found at i:67763999 original size:188 final size:188
Alignment explanation
Indices: 67763740--67764132 Score: 624
Period size: 188 Copynumber: 2.1 Consensus size: 188
67763730 GTATTAGCGA
* * * * * *
67763740 CGTTTTCGGTAAAGCGCCACAAATATCTTAATGAAAATGCACCGTTTCGTCTTGAGGTAGATTAG
1 CGTTTACGGTAAAACGCCACAAATATCTTAACGAAAACGCACCGTTTCGTCCTGAGGTAGATTAA
* ** *
67763805 TATTAGTGGCATTTTTAGAAAAACGCCGTAAAAGAACATAATTAGTGGCGTTTATTTTTATGCGC
66 TATTAGTGGCATTTTTAAAAAAACGCCGTAAAAGAACATAATTAGTGGCGTTTATTTGGAAGCGC
*
67763870 CGCAAAATACCTTAACCAAAACGCAGCGTTTGGTTTTGAGGTATATTAGAATTAGTGG
131 CGCAAAATACCTTAACCAAAACACAGCGTTTGGTTTTGAGGTATATTAGAATTAGTGG
* *
67763928 CGTTTACGATAAAACGCCACAAATATCTTAACGAAAACGCACCGTTTGGTCCTGAGGTAGATTAA
1 CGTTTACGGTAAAACGCCACAAATATCTTAACGAAAACGCACCGTTTCGTCCTGAGGTAGATTAA
*
67763993 TATTAGTGGCGTTTTTAAAAAAACGCCGTAAAAGAACATAATTAGTGGCGTTTATTTGGAAGCGC
66 TATTAGTGGCATTTTTAAAAAAACGCCGTAAAAGAACATAATTAGTGGCGTTTATTTGGAAGCGC
* * *
67764058 CGCAAAATGCCTTAACCAAAACACAGTGTTTGGTTTTGATGTATATTAGAATTAGTGG
131 CGCAAAATACCTTAACCAAAACACAGCGTTTGGTTTTGAGGTATATTAGAATTAGTGG
*
67764116 CGTTTATGGTAAAACGC
1 CGTTTACGGTAAAACGC
67764133 TGCTAAAGAA
Statistics
Matches: 186, Mismatches: 19, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
188 186 1.00
ACGTcount: A:0.33, C:0.16, G:0.21, T:0.31
Consensus pattern (188 bp):
CGTTTACGGTAAAACGCCACAAATATCTTAACGAAAACGCACCGTTTCGTCCTGAGGTAGATTAA
TATTAGTGGCATTTTTAAAAAAACGCCGTAAAAGAACATAATTAGTGGCGTTTATTTGGAAGCGC
CGCAAAATACCTTAACCAAAACACAGCGTTTGGTTTTGAGGTATATTAGAATTAGTGG
Found at i:67764016 original size:74 final size:74
Alignment explanation
Indices: 67763874--67764019 Score: 186
Period size: 74 Copynumber: 2.0 Consensus size: 74
67763864 ATGCGCCGCA
* ** * * *
67763874 AAATACCTTAACCAAAACGCAGCGTTTGGTTTTGAGGTATATTAGAATTAGTGGCGTTTACGATA
1 AAATACCTTAACCAAAACGCACCGTTTGGTCCTGAGGTAGATTAGAATTAGTGGCGTTTACAAAA
67763939 AAACGCCAC
66 AAACGCCAC
* * **
67763948 AAATATCTTAACGAAAACGCACCGTTTGGTCCTGAGGTAGATTA-ATATTAGTGGCGTTTTTAAA
1 AAATACCTTAACCAAAACGCACCGTTTGGTCCTGAGGTAGATTAGA-ATTAGTGGCGTTTACAAA
67764012 AAAACGCC
65 AAAACGCC
67764020 GTAAAAGAAC
Statistics
Matches: 61, Mismatches: 10, Indels: 2
0.84 0.14 0.03
Matches are distributed among these distances:
73 1 0.02
74 60 0.98
ACGTcount: A:0.34, C:0.17, G:0.20, T:0.29
Consensus pattern (74 bp):
AAATACCTTAACCAAAACGCACCGTTTGGTCCTGAGGTAGATTAGAATTAGTGGCGTTTACAAAA
AAACGCCAC
Found at i:67764562 original size:7 final size:7
Alignment explanation
Indices: 67764552--67764584 Score: 52
Period size: 7 Copynumber: 5.0 Consensus size: 7
67764542 TATGGATTAT
67764552 GGGTTAG
1 GGGTTAG
67764559 GGGTTAG
1 GGGTTAG
67764566 GGGTTA-
1 GGGTTAG
67764572 -GGTTAG
1 GGGTTAG
67764578 GGGTTAG
1 GGGTTAG
67764585 ATGTTAAGAG
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
5 5 0.21
7 19 0.79
ACGTcount: A:0.15, C:0.00, G:0.55, T:0.30
Consensus pattern (7 bp):
GGGTTAG
Found at i:67764577 original size:12 final size:12
Alignment explanation
Indices: 67764560--67764584 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
67764550 ATGGGTTAGG
67764560 GGTTAGGGGTTA
1 GGTTAGGGGTTA
67764572 GGTTAGGGGTTA
1 GGTTAGGGGTTA
67764584 G
1 G
67764585 ATGTTAAGAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.00, G:0.52, T:0.32
Consensus pattern (12 bp):
GGTTAGGGGTTA
Found at i:67764590 original size:19 final size:20
Alignment explanation
Indices: 67764553--67764605 Score: 63
Period size: 19 Copynumber: 2.6 Consensus size: 20
67764543 ATGGATTATG
*
67764553 GGTTAGGGGTTAGGGGTT-A
1 GGTTAGGGGTTAGAGGTTAA
*
67764572 GGTTAGGGGTTAGATGTTAA
1 GGTTAGGGGTTAGAGGTTAA
*
67764592 GAGTTAGGGTTTAG
1 G-GTTAGGGGTTAG
67764606 GATTTATAAA
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
19 16 0.55
20 2 0.07
21 11 0.38
ACGTcount: A:0.21, C:0.00, G:0.45, T:0.34
Consensus pattern (20 bp):
GGTTAGGGGTTAGAGGTTAA
Found at i:67764695 original size:7 final size:7
Alignment explanation
Indices: 67764683--67764772 Score: 92
Period size: 7 Copynumber: 12.9 Consensus size: 7
67764673 TAAATAAGTT
67764683 TTAGGGG
1 TTAGGGG
67764690 TTAGGGG
1 TTAGGGG
*
67764697 TTAGAGG
1 TTAGGGG
* *
67764704 TCATGGG
1 TTAGGGG
*
67764711 TTAAGGGT
1 TT-AGGGG
67764719 TTA-GGG
1 TTAGGGG
*
67764725 TTAAGGG
1 TTAGGGG
*
67764732 TTAAGGG
1 TTAGGGG
67764739 TTAGGGG
1 TTAGGGG
*
67764746 TTAAGGG
1 TTAGGGG
67764753 TTAGGGG
1 TTAGGGG
*
67764760 TTATGGG
1 TTAGGGG
67764767 TTAGGG
1 TTAGGG
67764773 ATTGGGTTAT
Statistics
Matches: 68, Mismatches: 13, Indels: 4
0.80 0.15 0.05
Matches are distributed among these distances:
6 5 0.07
7 58 0.85
8 5 0.07
ACGTcount: A:0.20, C:0.01, G:0.48, T:0.31
Consensus pattern (7 bp):
TTAGGGG
Found at i:67764725 original size:14 final size:14
Alignment explanation
Indices: 67764708--67764781 Score: 73
Period size: 14 Copynumber: 5.4 Consensus size: 14
67764698 TAGAGGTCAT
67764708 GGGTTAAGGGTTTA
1 GGGTTAAGGGTTTA
*
67764722 GGGTTAAGGGTTAA
1 GGGTTAAGGGTTTA
* *
67764736 GGGTTAGGGGTTAA
1 GGGTTAAGGGTTTA
*
67764750 GGGTT-AGGGGTTA
1 GGGTTAAGGGTTTA
*
67764763 TGGGTT-AGGGATT-
1 -GGGTTAAGGGTTTA
67764776 GGGTTA
1 GGGTTA
67764782 TGGTTTAAGG
Statistics
Matches: 52, Mismatches: 6, Indels: 5
0.83 0.10 0.08
Matches are distributed among these distances:
12 5 0.10
13 5 0.10
14 42 0.81
ACGTcount: A:0.20, C:0.00, G:0.47, T:0.32
Consensus pattern (14 bp):
GGGTTAAGGGTTTA
Found at i:67766480 original size:10 final size:10
Alignment explanation
Indices: 67766465--67766489 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
67766455 TCGAAAATTG
67766465 CAAAATTGTT
1 CAAAATTGTT
67766475 CAAAATTGTT
1 CAAAATTGTT
67766485 CAAAA
1 CAAAA
67766490 CCATGTCGAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.48, C:0.12, G:0.08, T:0.32
Consensus pattern (10 bp):
CAAAATTGTT
Found at i:67767260 original size:18 final size:19
Alignment explanation
Indices: 67767237--67767283 Score: 60
Period size: 18 Copynumber: 2.5 Consensus size: 19
67767227 TCACAGAAAT
*
67767237 TTATGTTTCTCTAGCA-TG
1 TTATGTTTCTCTACCATTG
* *
67767255 TTATGTTTCTGTACCATTT
1 TTATGTTTCTCTACCATTG
67767274 TTATGTTTCT
1 TTATGTTTCT
67767284 TTATCCTTTA
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
18 14 0.56
19 11 0.44
ACGTcount: A:0.15, C:0.15, G:0.13, T:0.57
Consensus pattern (19 bp):
TTATGTTTCTCTACCATTG
Found at i:67767304 original size:7 final size:7
Alignment explanation
Indices: 67767294--67767380 Score: 111
Period size: 7 Copynumber: 12.3 Consensus size: 7
67767284 TTATCCTTTA
67767294 TTTTCTG
1 TTTTCTG
*
67767301 TTTTCTA
1 TTTTCTG
67767308 TTTTCTG
1 TTTTCTG
67767315 TTTTCTG
1 TTTTCTG
67767322 TTTTCTG
1 TTTTCTG
**
67767329 CATTCTG
1 TTTTCTG
67767336 TTTTCTG
1 TTTTCTG
*
67767343 TTTTCTA
1 TTTTCTG
*
67767350 TTTTTTG
1 TTTTCTG
67767357 TTTTCTG
1 TTTTCTG
*
67767364 TTTTGCTA
1 TTTT-CTG
67767372 TTTTCTG
1 TTTTCTG
67767379 TT
1 TT
67767381 GAATGAAGTG
Statistics
Matches: 67, Mismatches: 12, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
7 61 0.91
8 6 0.09
ACGTcount: A:0.05, C:0.14, G:0.11, T:0.70
Consensus pattern (7 bp):
TTTTCTG
Found at i:67767320 original size:21 final size:21
Alignment explanation
Indices: 67767294--67767380 Score: 129
Period size: 21 Copynumber: 4.1 Consensus size: 21
67767284 TTATCCTTTA
67767294 TTTTCTGTTTTCTATTTTCTG
1 TTTTCTGTTTTCTATTTTCTG
***
67767315 TTTTCTGTTTTCTGCATTCTG
1 TTTTCTGTTTTCTATTTTCTG
*
67767336 TTTTCTGTTTTCTATTTTTTG
1 TTTTCTGTTTTCTATTTTCTG
67767357 TTTTCTGTTTTGCTATTTTCTG
1 TTTTCTGTTTT-CTATTTTCTG
67767379 TT
1 TT
67767381 GAATGAAGTG
Statistics
Matches: 57, Mismatches: 8, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
21 46 0.81
22 11 0.19
ACGTcount: A:0.05, C:0.14, G:0.11, T:0.70
Consensus pattern (21 bp):
TTTTCTGTTTTCTATTTTCTG
Found at i:67767897 original size:100 final size:100
Alignment explanation
Indices: 67767783--67768395 Score: 988
Period size: 100 Copynumber: 6.1 Consensus size: 100
67767773 TAATATTAAA
67767783 AAAATATATATATGTTAATATTTTTACAATTTAATTTAACTTATTACTAATACATATATTGTTCG
1 AAAATATATATATGTTAATATTTTTACAATTTAATTTAACTTATTACTAATACATATATTGTTCG
67767848 AATATAATTTTTTAAAATTTATATATTACATTA-T
66 AATATAATTTTTTAAAATTTATATATTACATTACT
**
67767882 GGGAATATATATATGTTAATATTTTTACAATTTAATTTAACTTATTACTAATACATATATTGTTC
1 -AAAATATATATATGTTAATATTTTTACAATTTAATTTAACTTATTACTAATACATATATTGTTC
*
67767947 GAATATAATTTTTTAAAATTTATATATTACATGACT
65 GAATATAATTTTTTAAAATTTATATATTACATTACT
*
67767983 TAAATATATATATGTTAATATTTTTACAATTTAATTTAACTTATTACTAATACATATATTGTTCG
1 AAAATATATATATGTTAATATTTTTACAATTTAATTTAACTTATTACTAATACATATATTGTTCG
* * *
67768048 AATATAATTTTTCAAATTTTATATGTTACATTACT
66 AATATAATTTTTTAAAATTTATATATTACATTACT
*
67768083 TAAATATATATATGTTAATATTTTTACAATTTAATTTAACTTATTACTAATACATATATTGTTCG
1 AAAATATATATATGTTAATATTTTTACAATTTAATTTAACTTATTACTAATACATATATTGTTCG
67768148 AATATAATTTTTTAAAATTTATATATTACATTACTT
66 AATATAATTTTTTAAAATTTATATATTACATTAC-T
67768184 AAATATATATATATGTTAATATTTTTACAATTTAATTTAACTTATTACTAATACATATATTGTTC
1 AAA-ATATATATATGTTAATATTTTTACAATTTAATTTAACTTATTACTAATACATATATTGTTC
* *
67768249 GAAGATAATTTTTTAAAATTTATATATTACATGACTT
65 GAATATAATTTTTTAAAATTTATATATTACATTAC-T
67768286 AAATATATATATATATATGTTAATATTTTTACAATTTAATTTAAC----T--TAATACATATATT
1 --A-A-A-ATATATATATGTTAATATTTTTACAATTTAATTTAACTTATTACTAATACATATATT
*
67768345 GTTCGAATATAATTTTTCAAAATTTATATATTACATTACT
61 GTTCGAATATAATTTTTTAAAATTTATATATTACATTACT
*
67768385 TAAATATATAT
1 AAAATATATAT
67768396 TTTTAAGTAT
Statistics
Matches: 487, Mismatches: 19, Indels: 20
0.93 0.04 0.04
Matches are distributed among these distances:
94 8 0.02
95 1 0.00
96 1 0.00
99 1 0.00
100 334 0.69
101 4 0.01
102 97 0.20
104 1 0.00
105 1 0.00
106 39 0.08
ACGTcount: A:0.40, C:0.07, G:0.04, T:0.49
Consensus pattern (100 bp):
AAAATATATATATGTTAATATTTTTACAATTTAATTTAACTTATTACTAATACATATATTGTTCG
AATATAATTTTTTAAAATTTATATATTACATTACT
Found at i:67768338 original size:302 final size:296
Alignment explanation
Indices: 67767784--67768395 Score: 1048
Period size: 302 Copynumber: 2.0 Consensus size: 296
67767774 AATATTAAAA
67767784 AAATATATATATGTTAATATTTTTACAATTTAATTTAACTTATTACTAATACATATATTGTTCGA
1 AAATATATATATGTTAATATTTTTACAATTTAATTTAACTTATTACTAATACATATATTGTTCGA
**
67767849 ATATAATTTTTTAAAATTTATATATTACATTATGGGAATATATATATGTTAATATTTTTACAATT
66 ATATAATTTTTTAAAATTTATATATTACATTATGAAAATATATATATGTTAATATTTTTACAATT
*
67767914 TAATTTAACTTATTACTAATACATATATTGTTCGAATATAATTTTTTAAAATTTATATATTACAT
131 TAATTTAACTTATTACTAATACATATATTGTTCGAAGATAATTTTTTAAAATTTATATATTACAT
67767979 GACTTAAATATATATATGTTAATATTTTTACAATTTAATTTAACTTATTACTAATACATATATTG
196 GACTTAAATATATATATGTTAATATTTTTACAATTTAATTTAAC---TTA-TAATACATATATTG
* *
67768044 TTCGAATATAATTTTTCAAATTTTATATGTTACATTACTT
257 TTCGAATATAATTTTTCAAAATTTATATATTACATTACTT
67768084 AAATATATATATGTTAATATTTTTACAATTTAATTTAACTTATTACTAATACATATATTGTTCGA
1 AAATATATATATGTTAATATTTTTACAATTTAATTTAACTTATTACTAATACATATATTGTTCGA
*
67768149 ATATAATTTTTTAAAATTTATATATTACATTACTTAAATATATATATATGTTAATATTTTTACAA
66 ATATAATTTTTTAAAATTTATATATTACATTA-TGAAA-ATATATATATGTTAATATTTTTACAA
67768214 TTTAATTTAACTTATTACTAATACATATATTGTTCGAAGATAATTTTTTAAAATTTATATATTAC
129 TTTAATTTAACTTATTACTAATACATATATTGTTCGAAGATAATTTTTTAAAATTTATATATTAC
67768279 ATGACTTAAATATATATATATATATGTTAATATTTTTACAATTTAATTTAAC-T-TAATACATAT
194 ATGAC-T---TA-A-ATATATATATGTTAATATTTTTACAATTTAATTTAACTTATAATACATAT
67768342 ATTGTTCGAATATAATTTTTCAAAATTTATATATTACATTACTT
253 ATTGTTCGAATATAATTTTTCAAAATTTATATATTACATTACTT
67768386 AAATATATAT
1 AAATATATAT
67768396 TTTTAAGTAT
Statistics
Matches: 298, Mismatches: 6, Indels: 14
0.94 0.02 0.04
Matches are distributed among these distances:
300 97 0.33
301 2 0.01
302 157 0.53
303 1 0.00
304 1 0.00
306 2 0.01
307 1 0.00
308 37 0.12
ACGTcount: A:0.40, C:0.07, G:0.04, T:0.49
Consensus pattern (296 bp):
AAATATATATATGTTAATATTTTTACAATTTAATTTAACTTATTACTAATACATATATTGTTCGA
ATATAATTTTTTAAAATTTATATATTACATTATGAAAATATATATATGTTAATATTTTTACAATT
TAATTTAACTTATTACTAATACATATATTGTTCGAAGATAATTTTTTAAAATTTATATATTACAT
GACTTAAATATATATATGTTAATATTTTTACAATTTAATTTAACTTATAATACATATATTGTTCG
AATATAATTTTTCAAAATTTATATATTACATTACTT
Found at i:67768483 original size:13 final size:13
Alignment explanation
Indices: 67768465--67768516 Score: 77
Period size: 13 Copynumber: 4.0 Consensus size: 13
67768455 TTTTACTCTT
*
67768465 AATATATTACTTG
1 AATATATTACTTA
67768478 AATATATTACTTA
1 AATATATTACTTA
*
67768491 AATAAATTACTTA
1 AATATATTACTTA
*
67768504 AATACATTACTTA
1 AATATATTACTTA
67768517 CTAAAATTTC
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
13 36 1.00
ACGTcount: A:0.46, C:0.10, G:0.02, T:0.42
Consensus pattern (13 bp):
AATATATTACTTA
Found at i:67768541 original size:53 final size:53
Alignment explanation
Indices: 67768484--67768619 Score: 200
Period size: 53 Copynumber: 2.6 Consensus size: 53
67768474 CTTGAATATA
**
67768484 TTACTTAAATAAATTACTTAAATACATTACTTACTAAAATTTCGTTAAATTTT
1 TTACTTAAATATGTTACTTAAATACATTACTTACTAAAATTTCGTTAAATTTT
* ** * *
67768537 TTACTTAAATATGTTACTCAGTTACATTAATTACTAAAATTTGGTTAAATTTT
1 TTACTTAAATATGTTACTTAAATACATTACTTACTAAAATTTCGTTAAATTTT
*
67768590 TTACTTAAATATGTTACTTGAATACATTAC
1 TTACTTAAATATGTTACTTAAATACATTAC
67768620 CCGCTATAAA
Statistics
Matches: 71, Mismatches: 12, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
53 71 1.00
ACGTcount: A:0.38, C:0.11, G:0.05, T:0.46
Consensus pattern (53 bp):
TTACTTAAATATGTTACTTAAATACATTACTTACTAAAATTTCGTTAAATTTT
Found at i:67768859 original size:9 final size:9
Alignment explanation
Indices: 67768835--67769085 Score: 157
Period size: 9 Copynumber: 28.8 Consensus size: 9
67768825 TATGTACAAG
67768835 AACTTACAT
1 AACTTACAT
* *
67768844 AATTTACAC
1 AACTTACAT
*
67768853 AACTTACTT
1 AACTTACAT
*
67768862 AACCTACAT
1 AACTTACAT
67768871 AACTTACAT
1 AACTTACAT
67768880 AA--TACA-
1 AACTTACAT
67768886 AAGCTTACAT
1 AA-CTTACAT
* *
67768896 AACTAAAAT
1 AACTTACAT
* *
67768905 AGCTTACAC
1 AACTTACAT
67768914 AACTTACAT
1 AACTTACAT
67768923 AACTTACAT
1 AACTTACAT
*
67768932 AACTTACAG
1 AACTTACAT
* *
67768941 AAGTTATAT
1 AACTTACAT
*
67768950 AATACATA-AT
1 -A-ACTTACAT
67768960 AACTTAC--
1 AACTTACAT
67768967 AACTTACAT
1 AACTTACAT
*
67768976 AACATACAT
1 AACTTACAT
* **
67768985 TACTTTGAT
1 AACTTACAT
67768994 AACTTACAT
1 AACTTACAT
*
67769003 AAGTTACAT
1 AACTTACAT
*
67769012 AA--TACAC
1 AACTTACAT
67769019 AACTTACAT
1 AACTTACAT
** *
67769028 AGTTTACTT
1 AACTTACAT
*
67769037 AA--TACAA
1 AACTTACAT
67769044 AACTTACAT
1 AACTTACAT
67769053 AACTT--AT
1 AACTTACAT
*
67769060 ACACGTACAT
1 A-ACTTACAT
*
67769070 AACCTACAT
1 AACTTACAT
*
67769079 AATTTAC
1 AACTTAC
67769086 TTAATACATA
Statistics
Matches: 181, Mismatches: 45, Indels: 32
0.70 0.17 0.12
Matches are distributed among these distances:
6 2 0.01
7 25 0.14
8 7 0.04
9 136 0.75
10 8 0.04
11 3 0.02
ACGTcount: A:0.45, C:0.20, G:0.03, T:0.31
Consensus pattern (9 bp):
AACTTACAT
Found at i:67769028 original size:25 final size:25
Alignment explanation
Indices: 67768866--67769058 Score: 131
Period size: 25 Copynumber: 7.4 Consensus size: 25
67768856 TTACTTAACC
67768866 TACATAACTTACATAATACA-AAGCT
1 TACATAACTTACATAATACACAA-CT
* * *
67768891 TACATAACTAAAATAGCTTACACAACT
1 TACATAACTTACATA--ATACACAACT
* *
67768918 TACATAACTTACATAACTTACAGAAGT
1 TACATAACTTACATAA--TACACAACT
*
67768945 TATATAA--TACATAATAACTTACAACT
1 TACATAACTTACATAAT-AC--ACAACT
* * ** *
67768971 TACATAACATACATTACTTTGATAACT
1 TACATAACTTACA-TA-ATACACAACT
*
67768998 TACATAAGTTACATAATACACAACT
1 TACATAACTTACATAATACACAACT
** * *
67769023 TACATAGTTTACTTAATACAAAACT
1 TACATAACTTACATAATACACAACT
67769048 TACATAACTTA
1 TACATAACTTA
67769059 TACACGTACA
Statistics
Matches: 128, Mismatches: 28, Indels: 24
0.71 0.16 0.13
Matches are distributed among these distances:
23 1 0.01
24 2 0.02
25 56 0.44
26 12 0.09
27 48 0.38
28 6 0.05
29 2 0.02
30 1 0.01
ACGTcount: A:0.46, C:0.19, G:0.04, T:0.32
Consensus pattern (25 bp):
TACATAACTTACATAATACACAACT
Done.