Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr09 ID=Chr09-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 70713020
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 1142373 characters in sequence are not A, C, G, or T
File 217 of 226
Found at i:68038002 original size:34 final size:35
Alignment explanation
Indices: 68037927--68038002 Score: 84
Period size: 34 Copynumber: 2.2 Consensus size: 35
68037917 TTGTTCGTAC
* *
68037927 TTTTCTTATTTTCGGATTTTATTACTTTTAAAATA
1 TTTTATTATTTTCGGATTATATTACTTTTAAAATA
* * * *
68037962 -TATATTATTTTCGTATTATATTA-TTTTATATTA
1 TTTTATTATTTTCGGATTATATTACTTTTAAAATA
68037995 TTTTATTA
1 TTTTATTA
68038003 CATAAAGTTT
Statistics
Matches: 33, Mismatches: 7, Indels: 3
0.77 0.16 0.07
Matches are distributed among these distances:
33 8 0.24
34 25 0.76
ACGTcount: A:0.28, C:0.05, G:0.04, T:0.63
Consensus pattern (35 bp):
TTTTATTATTTTCGGATTATATTACTTTTAAAATA
Found at i:68038260 original size:158 final size:158
Alignment explanation
Indices: 68037913--68038440 Score: 628
Period size: 158 Copynumber: 3.4 Consensus size: 158
68037903 AGGCGGCACC
* * ** * * *
68037913 CCCTTTGTTCGTACTTTTCTTATTTTCGGATTTTATTACTTTTAAAATATATATTATTTTCGTAT
1 CCCTTTGTTCATATTTTTCTTATTTTTAGATTTTATTACTTTCAAAAAATATACTATTTTCGTAT
* * *
68037978 TATATTATTTTATATTATTTTATTACATAAAGTTTGAAATG-------TT-GTCTTTTTTTTATA
66 TTTATTATTTTATATTATTTTAGTACATAAAGTTTGAAATGTATTAATTTAGTGTTTTTTTTATA
*
68038035 TAAATTTAGTAAAAAACCCTCATTTTGG
131 TAAATTTAGTAAAAAACCCTTATTTTGG
* *
68038063 CCCTTTGTTCATATTTTTCTTATTTTAAAATTTTATTACTTTCAAAAAATATACTATTTTCGTAT
1 CCCTTTGTTCATATTTTTCTTATTTTTAGATTTTATTACTTTCAAAAAATATACTATTTTCGTAT
68038128 TTTATTATTTTATATTATTTTAGTACATAAAGTTTGAAATGTATTAATTTAGTGTGTTTTTTTTA
66 TTTATTATTTTATATTATTTTAGTACATAAAGTTTGAAATGTATTAATTTA--GTGTTTTTTTTA
* * *
68038193 TATAAA-GTA-AAAAAAACTCTTATTTTGG
129 TATAAATTTAGTAAAAAACCCTTATTTTGG
* * * **
68038221 CCATTTGTTCCTATTTTTCTTATTTTTGGATTTTATTACTTTCAAAAAATATACTATTTTTTTAT
1 CCCTTTGTTCATATTTTTCTTATTTTTAGATTTTATTACTTTCAAAAAATATACTATTTTCGTAT
* * * *
68038286 TTTTTTATTTTATATTATTTTAGTAGATAATGTTTGAAATGTATTATTTTAGTG-TTTTTTTATA
66 TTTATTATTTTATATTATTTTAGTACATAAAGTTTGAAATGTATTAATTTAGTGTTTTTTTTATA
* *
68038350 TAAATTTAGTGAAAAACCCTTATTTTGA
131 TAAATTTAGTAAAAAACCCTTATTTTGG
* * * * ** *
68038378 CCCTTTATTCGTATATTTCTTTTTTTCTTCAGATTTTATTACTTTCAGTAAATACACTATTTT
1 CCCTTTGTTCATATTTTTC-TTATTT-TT-AGATTTTATTACTTTCAAAAAATATACTATTTT
68038441 TGCTATTTAT
Statistics
Matches: 323, Mismatches: 40, Indels: 20
0.84 0.10 0.05
Matches are distributed among these distances:
150 96 0.30
155 14 0.04
156 5 0.02
157 32 0.10
158 126 0.39
159 4 0.01
160 46 0.14
ACGTcount: A:0.29, C:0.09, G:0.08, T:0.55
Consensus pattern (158 bp):
CCCTTTGTTCATATTTTTCTTATTTTTAGATTTTATTACTTTCAAAAAATATACTATTTTCGTAT
TTTATTATTTTATATTATTTTAGTACATAAAGTTTGAAATGTATTAATTTAGTGTTTTTTTTATA
TAAATTTAGTAAAAAACCCTTATTTTGG
Found at i:68039239 original size:28 final size:27
Alignment explanation
Indices: 68039203--68039261 Score: 66
Period size: 27 Copynumber: 2.1 Consensus size: 27
68039193 AGTTTTGTTC
*
68039203 AAAATCATT-TCTTGTTATTCTATTTACT
1 AAAAACATTATCTTGTT-TT-TATTTACT
* *
68039231 AAAAACATTATTTTGTTTTTATTTTCT
1 AAAAACATTATCTTGTTTTTATTTACT
68039258 AAAA
1 AAAA
68039262 CTTATAATTT
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
27 11 0.41
28 10 0.37
29 6 0.22
ACGTcount: A:0.34, C:0.10, G:0.03, T:0.53
Consensus pattern (27 bp):
AAAAACATTATCTTGTTTTTATTTACT
Found at i:68040283 original size:35 final size:36
Alignment explanation
Indices: 68040237--68040308 Score: 128
Period size: 35 Copynumber: 2.0 Consensus size: 36
68040227 AATCTCAAAA
68040237 TACGACATATCATTTATTTAAAAAA-AATTATGTAT
1 TACGACATATCATTTATTTAAAAAATAATTATGTAT
*
68040272 TACGACATATCATTTATTTAAAAAATATTTATGTAT
1 TACGACATATCATTTATTTAAAAAATAATTATGTAT
68040308 T
1 T
68040309 GAGTAATGAT
Statistics
Matches: 35, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
35 25 0.71
36 10 0.29
ACGTcount: A:0.43, C:0.08, G:0.06, T:0.43
Consensus pattern (36 bp):
TACGACATATCATTTATTTAAAAAATAATTATGTAT
Found at i:68040997 original size:6 final size:7
Alignment explanation
Indices: 68040981--68041014 Score: 50
Period size: 7 Copynumber: 4.7 Consensus size: 7
68040971 ATCATAGGAC
*
68040981 AAAATTA
1 AAAAATA
68040988 AAAAATA
1 AAAAATA
68040995 AAAAATAA
1 AAAAAT-A
68041003 AAAAATA
1 AAAAATA
68041010 AAAAA
1 AAAAA
68041015 CTTGATTGCA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
7 18 0.72
8 7 0.28
ACGTcount: A:0.85, C:0.00, G:0.00, T:0.15
Consensus pattern (7 bp):
AAAAATA
Found at i:68040998 original size:8 final size:8
Alignment explanation
Indices: 68040981--68041014 Score: 52
Period size: 8 Copynumber: 4.4 Consensus size: 8
68040971 ATCATAGGAC
*
68040981 AAAATTAA
1 AAAATAAA
68040989 AAAAT-AA
1 AAAATAAA
68040996 AAAATAAA
1 AAAATAAA
68041004 AAAATAAA
1 AAAATAAA
68041012 AAA
1 AAA
68041015 CTTGATTGCA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
7 7 0.28
8 18 0.72
ACGTcount: A:0.85, C:0.00, G:0.00, T:0.15
Consensus pattern (8 bp):
AAAATAAA
Found at i:68041005 original size:15 final size:15
Alignment explanation
Indices: 68040981--68041014 Score: 59
Period size: 15 Copynumber: 2.3 Consensus size: 15
68040971 ATCATAGGAC
*
68040981 AAAATTAAAAAATAA
1 AAAATAAAAAAATAA
68040996 AAAATAAAAAAATAA
1 AAAATAAAAAAATAA
68041011 AAAA
1 AAAA
68041015 CTTGATTGCA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.85, C:0.00, G:0.00, T:0.15
Consensus pattern (15 bp):
AAAATAAAAAAATAA
Found at i:68041875 original size:23 final size:23
Alignment explanation
Indices: 68041849--68041897 Score: 57
Period size: 23 Copynumber: 2.2 Consensus size: 23
68041839 TGGGCCTTTA
68041849 ATTTTTGGG-CTATAATTTTTATT
1 ATTTTTGGGTCTATAATTTTT-TT
* *
68041872 A-TTTTGGGTGTGTAATTTTTTT
1 ATTTTTGGGTCTATAATTTTTTT
68041894 ATTT
1 ATTT
68041898 GTAAATTAGG
Statistics
Matches: 22, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
22 10 0.45
23 12 0.55
ACGTcount: A:0.18, C:0.02, G:0.16, T:0.63
Consensus pattern (23 bp):
ATTTTTGGGTCTATAATTTTTTT
Found at i:68041879 original size:22 final size:22
Alignment explanation
Indices: 68041851--68041897 Score: 60
Period size: 22 Copynumber: 2.1 Consensus size: 22
68041841 GGCCTTTAAT
68041851 TTTTGGG-CTATAATTTTTATTA
1 TTTTGGGTCTATAATTTTT-TTA
* *
68041873 TTTTGGGTGTGTAATTTTTTTA
1 TTTTGGGTCTATAATTTTTTTA
68041895 TTT
1 TTT
68041898 GTAAATTAGG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
22 13 0.59
23 9 0.41
ACGTcount: A:0.17, C:0.02, G:0.17, T:0.64
Consensus pattern (22 bp):
TTTTGGGTCTATAATTTTTTTA
Found at i:68043687 original size:46 final size:46
Alignment explanation
Indices: 68043620--68043709 Score: 162
Period size: 46 Copynumber: 2.0 Consensus size: 46
68043610 TGACTAAAAA
*
68043620 AAATGCGGATATTGTTGTAGAACCGAGTCTTCAGGTTCCCATATGG
1 AAATGCAGATATTGTTGTAGAACCGAGTCTTCAGGTTCCCATATGG
*
68043666 AAATGCAGATATTGTTGTAGAACCGAGTCTTCAGGTTTCCATAT
1 AAATGCAGATATTGTTGTAGAACCGAGTCTTCAGGTTCCCATAT
68043710 AACTTCCTCA
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
46 42 1.00
ACGTcount: A:0.28, C:0.17, G:0.23, T:0.32
Consensus pattern (46 bp):
AAATGCAGATATTGTTGTAGAACCGAGTCTTCAGGTTCCCATATGG
Found at i:68049031 original size:28 final size:28
Alignment explanation
Indices: 68049000--68049054 Score: 85
Period size: 28 Copynumber: 2.0 Consensus size: 28
68048990 ATGACATATG
68049000 AAAA-ATTATAAAATTAAAAAATTCATTA
1 AAAACATTA-AAAATTAAAAAATTCATTA
*
68049028 AAAACATTAAAATTTAAAAAATTCATT
1 AAAACATTAAAAATTAAAAAATTCATT
68049055 CGATTCGATT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
28 21 0.84
29 4 0.16
ACGTcount: A:0.62, C:0.05, G:0.00, T:0.33
Consensus pattern (28 bp):
AAAACATTAAAAATTAAAAAATTCATTA
Found at i:68050850 original size:13 final size:13
Alignment explanation
Indices: 68050832--68050879 Score: 53
Period size: 13 Copynumber: 3.8 Consensus size: 13
68050822 TTCATATTTT
* *
68050832 TAAAATTTTTATA
1 TAAAATATTTAAA
68050845 TAAAATATTTAAA
1 TAAAATATTTAAA
*
68050858 TAAAA-ATTAAAA
1 TAAAATATTTAAA
*
68050870 TATAATATTT
1 TAAAATATTT
68050880 GAAAATCAAA
Statistics
Matches: 29, Mismatches: 5, Indels: 2
0.81 0.14 0.06
Matches are distributed among these distances:
12 10 0.34
13 19 0.66
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (13 bp):
TAAAATATTTAAA
Found at i:68053100 original size:2 final size:2
Alignment explanation
Indices: 68053095--68053121 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
68053085 AGTACTTTTC
68053095 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
68053122 AATTGAGGGA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:68053273 original size:31 final size:31
Alignment explanation
Indices: 68053229--68053288 Score: 77
Period size: 31 Copynumber: 1.9 Consensus size: 31
68053219 TTGGTGCAAT
*
68053229 TATAAACATGAAAC-TTGAATTGTGATTCATA
1 TATAAACAAGAAACTTTG-ATTGTGATTCATA
* *
68053260 TATATACAAGAAACTTTGATTTTGATTCA
1 TATAAACAAGAAACTTTGATTGTGATTCA
68053289 ATTGTACACA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
31 22 0.88
32 3 0.12
ACGTcount: A:0.40, C:0.10, G:0.12, T:0.38
Consensus pattern (31 bp):
TATAAACAAGAAACTTTGATTGTGATTCATA
Found at i:68053303 original size:14 final size:14
Alignment explanation
Indices: 68053284--68053314 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
68053274 TTTGATTTTG
68053284 ATTCAATTGTACAC
1 ATTCAATTGTACAC
68053298 ATTCAATTGTACAC
1 ATTCAATTGTACAC
68053312 ATT
1 ATT
68053315 TAAAGAAATA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.35, C:0.19, G:0.06, T:0.39
Consensus pattern (14 bp):
ATTCAATTGTACAC
Found at i:68069719 original size:13 final size:13
Alignment explanation
Indices: 68069685--68069726 Score: 57
Period size: 13 Copynumber: 3.1 Consensus size: 13
68069675 AGTGGGGTGG
68069685 TTGAAAAAGGGAAT
1 TTGAAAAA-GGAAT
*
68069699 TTGAAAAAAGAAAT
1 TTG-AAAAAGGAAT
68069713 TTGAAAAAGGAAT
1 TTGAAAAAGGAAT
68069726 T
1 T
68069727 GTAAATGGTA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 10 0.40
14 10 0.40
15 5 0.20
ACGTcount: A:0.55, C:0.00, G:0.21, T:0.24
Consensus pattern (13 bp):
TTGAAAAAGGAAT
Found at i:68072037 original size:19 final size:19
Alignment explanation
Indices: 68072008--68072057 Score: 68
Period size: 17 Copynumber: 2.7 Consensus size: 19
68071998 AAAAGATTAA
68072008 AAAATATTTTTATACTTTTT
1 AAAATATTTTTATA-TTTTT
*
68072028 AATA-ATTTTTA-ATTTTT
1 AAAATATTTTTATATTTTT
68072045 AAAATATTTTTAT
1 AAAATATTTTTAT
68072058 TTGTTTTATT
Statistics
Matches: 26, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
17 8 0.31
18 8 0.31
19 7 0.27
20 3 0.12
ACGTcount: A:0.38, C:0.02, G:0.00, T:0.60
Consensus pattern (19 bp):
AAAATATTTTTATATTTTT
Found at i:68074702 original size:33 final size:33
Alignment explanation
Indices: 68074594--68074709 Score: 112
Period size: 33 Copynumber: 3.5 Consensus size: 33
68074584 TGTGTAAATT
*
68074594 TAATGATACATGAAATATTT-TATAATTTTAAATA
1 TAATGATACATGAAATATTTAAATAA-TTT-AATA
* ** *
68074628 TAATGATAAAT--AATATTTAAATAACCTAAAA
1 TAATGATACATGAAATATTTAAATAATTTAATA
* *
68074659 TGATAATACATGAAATATTTAAATAATTTAATA
1 TAATGATACATGAAATATTTAAATAATTTAATA
* *
68074692 TAATGGTACATAAAATAT
1 TAATGATACATGAAATAT
68074710 AAATTAATCT
Statistics
Matches: 64, Mismatches: 15, Indels: 7
0.74 0.17 0.08
Matches are distributed among these distances:
31 11 0.17
32 8 0.12
33 35 0.55
34 10 0.16
ACGTcount: A:0.52, C:0.04, G:0.06, T:0.38
Consensus pattern (33 bp):
TAATGATACATGAAATATTTAAATAATTTAATA
Found at i:68076488 original size:31 final size:29
Alignment explanation
Indices: 68076453--68076515 Score: 74
Period size: 29 Copynumber: 2.1 Consensus size: 29
68076443 TCTTTATACT
* *
68076453 ATTTACTC-TTTAATTTAATATATAAAAATTA
1 ATTTACTCATTT--TTTAA-ATAAAAAAATAA
68076484 ATTTACTCATTTTTTAAATAAAAAAATAA
1 ATTTACTCATTTTTTAAATAAAAAAATAA
68076513 ATT
1 ATT
68076516 ATAATCTACT
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
29 13 0.45
30 5 0.17
31 8 0.28
32 3 0.10
ACGTcount: A:0.48, C:0.06, G:0.00, T:0.46
Consensus pattern (29 bp):
ATTTACTCATTTTTTAAATAAAAAAATAA
Found at i:68078718 original size:16 final size:19
Alignment explanation
Indices: 68078682--68078716 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
68078672 TATTATTGAA
68078682 ATTATATTATAAATATTTT
1 ATTATATTATAAATATTTT
68078701 ATTAT-TTATAAA-ATTT
1 ATTATATTATAAATATTT
68078717 ATCACATTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 4 0.25
18 7 0.44
19 5 0.31
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (19 bp):
ATTATATTATAAATATTTT
Found at i:68078864 original size:17 final size:16
Alignment explanation
Indices: 68078842--68078877 Score: 54
Period size: 17 Copynumber: 2.2 Consensus size: 16
68078832 ATATAATAAA
*
68078842 TAAAGTATGTTTTCTAT
1 TAAAGTATATTTTC-AT
68078859 TAAAGTATATTTTCAT
1 TAAAGTATATTTTCAT
68078875 TAA
1 TAA
68078878 CCACAAACGT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 5 0.28
17 13 0.72
ACGTcount: A:0.36, C:0.06, G:0.08, T:0.50
Consensus pattern (16 bp):
TAAAGTATATTTTCAT
Found at i:68082259 original size:2 final size:2
Alignment explanation
Indices: 68082252--68082285 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
68082242 ATAATAGTAG
68082252 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
68082286 ATAGGACTAA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:68083014 original size:19 final size:17
Alignment explanation
Indices: 68082990--68083025 Score: 54
Period size: 19 Copynumber: 2.0 Consensus size: 17
68082980 TCTATTTTTT
68082990 AACAGTTATTAAAGAAAAA
1 AACAGTT-TTAAA-AAAAA
68083009 AACAGTTTTAAAAAAAA
1 AACAGTTTTAAAAAAAA
68083026 TGATAAAAAC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 5 0.29
18 5 0.29
19 7 0.41
ACGTcount: A:0.64, C:0.06, G:0.08, T:0.22
Consensus pattern (17 bp):
AACAGTTTTAAAAAAAA
Found at i:68083025 original size:18 final size:19
Alignment explanation
Indices: 68082990--68083025 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
68082980 TCTATTTTTT
*
68082990 AACAGTTATTAAAGAAAAA
1 AACAGTTATTAAAAAAAAA
68083009 AACAGTT-TTAAAAAAAA
1 AACAGTTATTAAAAAAAA
68083026 TGATAAAAAC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 9 0.56
19 7 0.44
ACGTcount: A:0.64, C:0.06, G:0.08, T:0.22
Consensus pattern (19 bp):
AACAGTTATTAAAAAAAAA
Found at i:68084201 original size:2 final size:2
Alignment explanation
Indices: 68084194--68084228 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
68084184 AGCAAAATTG
68084194 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
68084229 AGCTAGATTT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:68089709 original size:14 final size:14
Alignment explanation
Indices: 68089690--68089731 Score: 50
Period size: 14 Copynumber: 3.0 Consensus size: 14
68089680 ATATAAACAC
68089690 ATATAATATTATTT
1 ATATAATATTATTT
*
68089704 ATATAA-ATATATAT
1 ATATAATAT-TATTT
*
68089718 AAATAATATTATTT
1 ATATAATATTATTT
68089732 TTGTATTTTT
Statistics
Matches: 23, Mismatches: 3, Indels: 4
0.77 0.10 0.13
Matches are distributed among these distances:
13 2 0.09
14 19 0.83
15 2 0.09
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (14 bp):
ATATAATATTATTT
Found at i:68089729 original size:24 final size:24
Alignment explanation
Indices: 68089680--68089727 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
68089670 TTATAAATAA
*
68089680 ATATAAACACATATAATATTATTT
1 ATATAAACACATATAATAATATTT
* *
68089704 ATATAAATATATATAAATAATATT
1 ATATAAACACATAT-AATAATATT
68089728 ATTTTTGTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
24 12 0.60
25 8 0.40
ACGTcount: A:0.54, C:0.04, G:0.00, T:0.42
Consensus pattern (24 bp):
ATATAAACACATATAATAATATTT
Found at i:68089980 original size:15 final size:15
Alignment explanation
Indices: 68089938--68089981 Score: 52
Period size: 16 Copynumber: 2.9 Consensus size: 15
68089928 TTTAACAGAG
68089938 AGTGACTAAAATAGA
1 AGTGACTAAAATAGA
* * *
68089953 AATGATTTAAAATATA
1 AGTGA-CTAAAATAGA
68089969 AGTGACTAAAATA
1 AGTGACTAAAATA
68089982 AAATGATTTA
Statistics
Matches: 23, Mismatches: 5, Indels: 2
0.77 0.17 0.07
Matches are distributed among these distances:
15 11 0.48
16 12 0.52
ACGTcount: A:0.55, C:0.05, G:0.14, T:0.27
Consensus pattern (15 bp):
AGTGACTAAAATAGA
Found at i:68089993 original size:15 final size:16
Alignment explanation
Indices: 68089944--68089994 Score: 61
Period size: 15 Copynumber: 3.3 Consensus size: 16
68089934 AGAGAGTGAC
68089944 TAAAATAGAAATGATT
1 TAAAATAGAAATGATT
* * *
68089960 TAAAATATAAGTGA-C
1 TAAAATAGAAATGATT
68089975 TAAAATA-AAATGATT
1 TAAAATAGAAATGATT
68089990 TAAAA
1 TAAAA
68089995 CGTTAATGAC
Statistics
Matches: 29, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
14 5 0.17
15 12 0.41
16 12 0.41
ACGTcount: A:0.59, C:0.02, G:0.10, T:0.29
Consensus pattern (16 bp):
TAAAATAGAAATGATT
Found at i:68090980 original size:40 final size:40
Alignment explanation
Indices: 68090925--68091005 Score: 162
Period size: 40 Copynumber: 2.0 Consensus size: 40
68090915 TTATTCAATA
68090925 CTGAAAAACAAAAGATTGAATTTTTTATTGTAAGTGGAAT
1 CTGAAAAACAAAAGATTGAATTTTTTATTGTAAGTGGAAT
68090965 CTGAAAAACAAAAGATTGAATTTTTTATTGTAAGTGGAAT
1 CTGAAAAACAAAAGATTGAATTTTTTATTGTAAGTGGAAT
68091005 C
1 C
68091006 ACTTTTTTTG
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 41 1.00
ACGTcount: A:0.42, C:0.06, G:0.17, T:0.35
Consensus pattern (40 bp):
CTGAAAAACAAAAGATTGAATTTTTTATTGTAAGTGGAAT
Found at i:68094922 original size:36 final size:37
Alignment explanation
Indices: 68094845--68094922 Score: 142
Period size: 36 Copynumber: 2.2 Consensus size: 37
68094835 ATGCGCATAC
68094845 TTTTGTTGCAACATAGAACCTGAAATTTGTGCATGTA
1 TTTTGTTGCAACATAGAACCTGAAATTTGTGCATGTA
68094882 -TTTGTTGCAACATAGAACCTG-AATTTGTGCATGTA
1 TTTTGTTGCAACATAGAACCTGAAATTTGTGCATGTA
68094917 TTTTGT
1 TTTTGT
68094923 GAAGTGACTG
Statistics
Matches: 40, Mismatches: 0, Indels: 3
0.93 0.00 0.07
Matches are distributed among these distances:
35 14 0.35
36 26 0.65
ACGTcount: A:0.27, C:0.13, G:0.19, T:0.41
Consensus pattern (37 bp):
TTTTGTTGCAACATAGAACCTGAAATTTGTGCATGTA
Found at i:68097437 original size:11 final size:11
Alignment explanation
Indices: 68097422--68097451 Score: 51
Period size: 11 Copynumber: 2.6 Consensus size: 11
68097412 AAAAAAATAA
68097422 AAAAAGTATTTT
1 AAAAA-TATTTT
68097434 AAAAATATTTT
1 AAAAATATTTT
68097445 AAAAATA
1 AAAAATA
68097452 AAAAATATTT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 13 0.72
12 5 0.28
ACGTcount: A:0.60, C:0.00, G:0.03, T:0.37
Consensus pattern (11 bp):
AAAAATATTTT
Found at i:68101828 original size:24 final size:24
Alignment explanation
Indices: 68101800--68101847 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
68101790 AGATACAATT
*
68101800 TTTTTCTGTATT-GTTTTAATTTGA
1 TTTTTCT-TATTAATTTTAATTTGA
*
68101824 TTTTTGTTATTAATTTTAATTTGA
1 TTTTTCTTATTAATTTTAATTTGA
68101848 ATTCTTTGAC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
23 4 0.19
24 17 0.81
ACGTcount: A:0.21, C:0.02, G:0.10, T:0.67
Consensus pattern (24 bp):
TTTTTCTTATTAATTTTAATTTGA
Found at i:68108817 original size:17 final size:17
Alignment explanation
Indices: 68108795--68108843 Score: 71
Period size: 17 Copynumber: 2.9 Consensus size: 17
68108785 AACTATGACA
*
68108795 ATATGCGAGTTGTGTTT
1 ATATGCGAGCTGTGTTT
68108812 ATATGCGAGCTGTGTTT
1 ATATGCGAGCTGTGTTT
* *
68108829 ATATGTGAACTGTGT
1 ATATGCGAGCTGTGT
68108844 CAATGTGTGA
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
17 29 1.00
ACGTcount: A:0.20, C:0.08, G:0.29, T:0.43
Consensus pattern (17 bp):
ATATGCGAGCTGTGTTT
Found at i:68108852 original size:17 final size:17
Alignment explanation
Indices: 68108832--68108875 Score: 70
Period size: 17 Copynumber: 2.6 Consensus size: 17
68108822 TGTGTTTATA
*
68108832 TGTGAACTGTGTCAATG
1 TGTGAACTGTGTAAATG
*
68108849 TGTGAACCGTGTAAATG
1 TGTGAACTGTGTAAATG
68108866 TGTGAACTGT
1 TGTGAACTGT
68108876 CACTGTAACG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 24 1.00
ACGTcount: A:0.25, C:0.11, G:0.30, T:0.34
Consensus pattern (17 bp):
TGTGAACTGTGTAAATG
Found at i:68110504 original size:25 final size:25
Alignment explanation
Indices: 68110476--68110531 Score: 69
Period size: 25 Copynumber: 2.2 Consensus size: 25
68110466 AAGCTCTTCT
*
68110476 GAGCTGAATAACAG-AAAGCTCATGC
1 GAGCTGAATAAC-GTAAAGCTCATAC
* *
68110501 GAGCTAAATAACGTGAAGCTCATAC
1 GAGCTGAATAACGTAAAGCTCATAC
68110526 GAGCTG
1 GAGCTG
68110532 TGGTGTGTCC
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
24 1 0.04
25 25 0.96
ACGTcount: A:0.38, C:0.20, G:0.25, T:0.18
Consensus pattern (25 bp):
GAGCTGAATAACGTAAAGCTCATAC
Found at i:68114202 original size:20 final size:20
Alignment explanation
Indices: 68114174--68114211 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
68114164 TTAAATTCAA
68114174 ATAAGAATTCTTAAATTTAGG
1 ATAAGAATTC-TAAATTTAGG
68114195 ATAA-AATTCTAAATTTA
1 ATAAGAATTCTAAATTTA
68114212 AGAAAATGAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
19 8 0.47
20 5 0.29
21 4 0.24
ACGTcount: A:0.47, C:0.05, G:0.08, T:0.39
Consensus pattern (20 bp):
ATAAGAATTCTAAATTTAGG
Found at i:68118542 original size:17 final size:18
Alignment explanation
Indices: 68118520--68118554 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
68118510 TAACTCTATC
68118520 AAATTT-TGGAAAGTGAT
1 AAATTTGTGGAAAGTGAT
68118537 AAATTTGTGGAAAGTGAT
1 AAATTTGTGGAAAGTGAT
68118555 CTCATCTAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 6 0.35
18 11 0.65
ACGTcount: A:0.40, C:0.00, G:0.26, T:0.34
Consensus pattern (18 bp):
AAATTTGTGGAAAGTGAT
Found at i:68119552 original size:106 final size:107
Alignment explanation
Indices: 68119366--68119688 Score: 441
Period size: 106 Copynumber: 3.0 Consensus size: 107
68119356 ATTAAAATTC
* * * *
68119366 AAAAGGATATTTGGCAATTTGGTTAAACGAGAAATCGAAACCCAGCACCTTAGGGCACGTTCCTT
1 AAAAGGATATTTAGCAATTTGGTTGAACGAGAAATCGAAACCCAGCACCTTAGGGCACGTTTCTC
*
68119431 GAATTTCCAAACGCAAAACATTGCCTTATTTTG-TAATTTTT
66 GAATTTCCAAACGCAAAACATTGCCTTATTTTGAAAATTTTT
* * *
68119472 GAAAGGATATTTAGCTATTTGGTTGAACGAGAAATCGAAACCCAGCACCTTAGGGCACGTTTCTG
1 AAAAGGATATTTAGCAATTTGGTTGAACGAGAAATCGAAACCCAGCACCTTAGGGCACGTTTCTC
*
68119537 GAATTTTCAAACGCAAAACATTGCCTTATTTTGAAAATTTTT
66 GAATTTCCAAACGCAAAACATTGCCTTATTTTGAAAATTTTT
* * * *
68119579 AAAAGAATATTAAGCAATTTGGTTGAACGAGAAAAATCGACACCCAGCACCTTAGGGCATGTTTT
1 AAAAGGATATTTAGCAATTTGGTTGAACGAG--AAATCGAAACCCAGCACCTTAGGGCACG-TTT
* * * * * *
68119644 CTCGAATTTCCAAAAGCTAAATATTGCCTCATTTAGAAAAATTTT
63 CTCGAATTTCCAAACGCAAAACATTGCCTTATTTTGAAAATTTTT
68119689 CTTTTTTTTT
Statistics
Matches: 191, Mismatches: 22, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
106 91 0.48
107 34 0.18
109 26 0.14
110 40 0.21
ACGTcount: A:0.35, C:0.18, G:0.17, T:0.31
Consensus pattern (107 bp):
AAAAGGATATTTAGCAATTTGGTTGAACGAGAAATCGAAACCCAGCACCTTAGGGCACGTTTCTC
GAATTTCCAAACGCAAAACATTGCCTTATTTTGAAAATTTTT
Found at i:68119826 original size:4 final size:4
Alignment explanation
Indices: 68119819--68119912 Score: 55
Period size: 4 Copynumber: 21.8 Consensus size: 4
68119809 ATACAACAAC
* * ** * *
68119819 AAAT AAAT AAAT AAAT AAACT AAA- ACAT AAAA AAAT GGAC ATAT AAAT
1 AAAT AAAT AAAT AAAT AAA-T AAAT AAAT AAAT AAAT AAAT AAAT AAAT
68119867 AAAT AAAT GAACAT AAAGT AAAAT AAAAT AAAAT AAAAT AAAT AAA
1 AAAT AAAT -AA-AT AAA-T -AAAT -AAAT -AAAT -AAAT AAAT AAA
68119913 ATAATAATAA
Statistics
Matches: 73, Mismatches: 11, Indels: 12
0.76 0.11 0.12
Matches are distributed among these distances:
3 2 0.03
4 41 0.56
5 25 0.34
6 5 0.07
ACGTcount: A:0.71, C:0.04, G:0.04, T:0.20
Consensus pattern (4 bp):
AAAT
Found at i:68119890 original size:20 final size:21
Alignment explanation
Indices: 68119816--68119893 Score: 67
Period size: 20 Copynumber: 3.9 Consensus size: 21
68119806 TATATACAAC
* *
68119816 AACAAATAAAT-AAATAAATA
1 AACATATAAATAAAATAAATG
*
68119836 AAC-TAAAACATAAAA-AAATG
1 AACATATAA-ATAAAATAAATG
*
68119856 GACATATAAAT-AAATAAATG
1 AACATATAAATAAAATAAATG
*
68119876 AACATA-AAGTAAAATAAA
1 AACATATAAATAAAATAAA
68119894 ATAAAATAAA
Statistics
Matches: 46, Mismatches: 7, Indels: 10
0.73 0.11 0.16
Matches are distributed among these distances:
19 9 0.20
20 30 0.65
21 7 0.15
ACGTcount: A:0.69, C:0.06, G:0.05, T:0.19
Consensus pattern (21 bp):
AACATATAAATAAAATAAATG
Found at i:68119893 original size:5 final size:5
Alignment explanation
Indices: 68119879--68119929 Score: 68
Period size: 5 Copynumber: 10.0 Consensus size: 5
68119869 ATAAATGAAC
*
68119879 ATAAA GTAAA ATAAA ATAAA ATAAA AT-AA ATAAA ATAATA ATAACA ATAAA
1 ATAAA ATAAA ATAAA ATAAA ATAAA ATAAA ATAAA ATAA-A ATAA-A ATAAA
68119930 GGAAAATAGA
Statistics
Matches: 41, Mismatches: 3, Indels: 4
0.85 0.06 0.08
Matches are distributed among these distances:
4 4 0.10
5 27 0.66
6 10 0.24
ACGTcount: A:0.75, C:0.02, G:0.02, T:0.22
Consensus pattern (5 bp):
ATAAA
Found at i:68120279 original size:3 final size:3
Alignment explanation
Indices: 68120271--68120313 Score: 68
Period size: 3 Copynumber: 14.3 Consensus size: 3
68120261 ATAAAAGAAA
* *
68120271 AAT AAT AAT AAT AAT AAT AAT AGT AAT AAT AAT AGT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
68120314 TGAAATTTAT
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
3 36 1.00
ACGTcount: A:0.63, C:0.00, G:0.05, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:68120288 original size:12 final size:12
Alignment explanation
Indices: 68120271--68120313 Score: 77
Period size: 12 Copynumber: 3.6 Consensus size: 12
68120261 ATAAAAGAAA
*
68120271 AATAATAATAAT
1 AATAATAATAGT
68120283 AATAATAATAGT
1 AATAATAATAGT
68120295 AATAATAATAGT
1 AATAATAATAGT
68120307 AATAATA
1 AATAATA
68120314 TGAAATTTAT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
12 30 1.00
ACGTcount: A:0.63, C:0.00, G:0.05, T:0.33
Consensus pattern (12 bp):
AATAATAATAGT
Found at i:68129689 original size:17 final size:18
Alignment explanation
Indices: 68129667--68129700 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
68129657 TCACAGATCG
*
68129667 AATATG-CAAAGTTCATA
1 AATATGTCAAAATTCATA
68129684 AATATGTCAAAATTCAT
1 AATATGTCAAAATTCAT
68129701 TTAATATAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.47, C:0.12, G:0.09, T:0.32
Consensus pattern (18 bp):
AATATGTCAAAATTCATA
Found at i:68129722 original size:15 final size:15
Alignment explanation
Indices: 68129693--68129726 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
68129683 AAATATGTCA
68129693 AAATTCATTTAATAT
1 AAATTCATTTAATAT
68129708 AAATT-ATTTATATAT
1 AAATTCATTTA-ATAT
68129723 AAAT
1 AAAT
68129727 ATAAAATACT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 5 0.28
15 13 0.72
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (15 bp):
AAATTCATTTAATAT
Found at i:68133092 original size:27 final size:27
Alignment explanation
Indices: 68132987--68133133 Score: 109
Period size: 27 Copynumber: 5.4 Consensus size: 27
68132977 GTAGTCTGCT
* *
68132987 GGGACAGTAAACAC-GTGGTAATCTGTC
1 GGGACAGTAAACACAG-AGTAATCTTTC
* * **
68133014 AGGACAGTAAACACAGGGTAATCCATC
1 GGGACAGTAAACACAGAGTAATCTTTC
* * *
68133041 GGGACAGTAAACACAGAATAGTCTTTT
1 GGGACAGTAAACACAGAGTAATCTTTC
* *
68133068 GGGATAGTAAACACAGAGTAATCTTCC
1 GGGACAGTAAACACAGAGTAATCTTTC
** * ** *
68133095 GTAACAGTAAACA-TGAGGTAGCCTGTC
1 GGGACAGTAAACACAGA-GTAATCTTTC
68133122 GGGACAGTAAAC
1 GGGACAGTAAAC
68133134 CTAGGATAAT
Statistics
Matches: 93, Mismatches: 25, Indels: 4
0.76 0.20 0.03
Matches are distributed among these distances:
26 2 0.02
27 90 0.97
28 1 0.01
ACGTcount: A:0.36, C:0.18, G:0.25, T:0.20
Consensus pattern (27 bp):
GGGACAGTAAACACAGAGTAATCTTTC
Found at i:68134645 original size:13 final size:13
Alignment explanation
Indices: 68134627--68134651 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
68134617 TCGCCAGCCT
68134627 CCATTGACCACCG
1 CCATTGACCACCG
68134640 CCATTGACCACC
1 CCATTGACCACC
68134652 ATTATCGATT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.48, G:0.12, T:0.16
Consensus pattern (13 bp):
CCATTGACCACCG
Found at i:68136251 original size:13 final size:14
Alignment explanation
Indices: 68136234--68136274 Score: 59
Period size: 13 Copynumber: 3.1 Consensus size: 14
68136224 ATGGGGGTAG
68136234 GATTCTGTATATCT
1 GATTCTGTATATCT
*
68136248 -ATTCTGCATATCT
1 GATTCTGTATATCT
68136261 GATTCTGT-TATCT
1 GATTCTGTATATCT
68136274 G
1 G
68136275 TATCTATAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 18 0.75
14 6 0.25
ACGTcount: A:0.20, C:0.17, G:0.15, T:0.49
Consensus pattern (14 bp):
GATTCTGTATATCT
Found at i:68141189 original size:18 final size:18
Alignment explanation
Indices: 68141138--68141189 Score: 54
Period size: 18 Copynumber: 2.9 Consensus size: 18
68141128 TAAAATAAAA
*
68141138 CATATATATTCTAAAACT
1 CATAAATATTCTAAAACT
*
68141156 CATGAAAT-TTCAAAAACT
1 CAT-AAATATTCTAAAACT
68141174 GCATAAATATT-TAAAA
1 -CATAAATATTCTAAAA
68141190 GAATATGTAA
Statistics
Matches: 28, Mismatches: 3, Indels: 6
0.76 0.08 0.16
Matches are distributed among these distances:
18 20 0.71
19 8 0.29
ACGTcount: A:0.50, C:0.13, G:0.04, T:0.33
Consensus pattern (18 bp):
CATAAATATTCTAAAACT
Found at i:68141766 original size:3 final size:3
Alignment explanation
Indices: 68141758--68141784 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
68141748 TGGATAAAGG
68141758 TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA
68141785 GTGACAACAG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:68143520 original size:98 final size:97
Alignment explanation
Indices: 68143336--68143925 Score: 396
Period size: 98 Copynumber: 6.1 Consensus size: 97
68143326 CCATTCTAGA
* * * * * * * **
68143336 TGGCCCAACAACAATGGCTTCCACTATCTGTATATTCTACCATCTCGGAT-GTCTCGACAACAAT
1 TGGCCCAACAACAATGGTTTTCATTATTTGCATATTCTACCATCCCGGATAG-CTCGACTATGAT
* * *** *
68143400 GGTTTTCACAGTTTATGTAATTTATCATCCTGAG
65 -GTTTTTACAATTTACACAATTTATCATCCCGAG
** * *
68143434 TGGCCTGACAGCAATGGTTTTCATTATTTGCATATTTTACCATCCCGGATAGCTCGACTATGATA
1 TGGCCCAACAACAATGGTTTTCATTATTTGCATATTCTACCATCCCGGATAGCTCGACTATGAT-
*
68143499 GTTTTTACAATTTACACAATTTA-CATCCCGGG
65 GTTTTTACAATTTACACAATTTATCATCCCGAG
* * * * * *
68143531 TGACCCAACAACGATGGTTTTCATTATTTGCATATTCTACCATCTCGGGTGGC-C-AGGTAATGA
1 TGGCCCAACAACAATGGTTTTCATTATTTGCATATTCTACCATCCCGGATAGCTCGA-CT-ATGA
* * * * * * *
68143594 TGGTTCT-C-ACTT-C-GATTTTCTACAAT-CCTAG
64 TGTTTTTACAATTTACACAATTTAT-C-ATCCCGAG
* * * * * * * *
68143625 ATGGCCCAACAACAATGGCTTCCACTATCTGTATATTCTACCATCTCGGAT-GTCTTGACAATGA
1 -TGGCCCAACAACAATGGTTTTCATTATTTGCATATTCTACCATCCCGGATAG-CTCGACTATGA
* ** * * *
68143689 TGGTTTT-CATAGTTTATGCAATTCATGATTCC-AGG
64 TGTTTTTACA-A-TTTACACAATTTATCATCCCGA-G
* * * * * *
68143724 TGGCACGACAGCAATGGTTTTCATTATTTGCACATTTTACCATCCCGGATAGCTCGACAATGATA
1 TGGCCCAACAACAATGGTTTTCATTATTTGCATATTCTACCATCCCGGATAGCTCGACTATGAT-
* *
68143789 GTTTTTACAATTTACAAAATTTACCATCCCGAG
65 GTTTTTACAATTTACACAATTTATCATCCCGAG
** * * * *
68143822 TGGCCCAACAATGATGGTTTTCATTATTTGAATATTCTACCATCCCGGGTGGCTC-AGTAATGAT
1 TGGCCCAACAACAATGGTTTTCATTATTTGCATATTCTACCATCCCGGATAGCTCGACT-ATGAT
*
68143886 GATTTTTACAATTTACACAATTTACCATCCCGAG
65 G-TTTTTACAATTTACACAATTTATCATCCCGAG
68143920 TGGCCC
1 TGGCCC
68143926 GTCAATGATG
Statistics
Matches: 378, Mismatches: 91, Indels: 46
0.73 0.18 0.09
Matches are distributed among these distances:
92 4 0.01
93 1 0.00
94 8 0.02
95 58 0.15
96 6 0.02
97 60 0.16
98 223 0.59
99 12 0.03
100 6 0.02
ACGTcount: A:0.26, C:0.23, G:0.17, T:0.34
Consensus pattern (97 bp):
TGGCCCAACAACAATGGTTTTCATTATTTGCATATTCTACCATCCCGGATAGCTCGACTATGATG
TTTTTACAATTTACACAATTTATCATCCCGAG
Found at i:68143752 original size:290 final size:290
Alignment explanation
Indices: 68143279--68143886 Score: 970
Period size: 290 Copynumber: 2.1 Consensus size: 290
68143269 TAAATGTTCC
** * *
68143279 ACCATCCTAGGTGGCCTAGTAATGATGGTTCTCACTTCGATTTTCTACCATTCTAGATGGCCCAA
1 ACCATCCCGGGTGGCC-AGTAATGATGGTTCTCACTTCGATTTTCTACAATCCTAGATGGCCCAA
68143344 CAACAATGGCTTCCACTATCTGTATATTCTACCATCTCGGATGTCTCGACAACAATGGTTTTCAC
65 CAACAATGGCTTCCACTATCTGTATATTCTACCATCTCGGATGTCTCGACAACAATGGTTTTCAC
* * * *
68143409 AGTTTATGTAATTTATCATCCTGAGTGGCCTGACAGCAATGGTTTTCATTATTTGCATATTTTAC
130 AGTTTATGCAATTCATCATCCAGAGTGGCCTGACAGCAATGGTTTTCATTATTTGCACATTTTAC
* * *
68143474 CATCCCGGATAGCTCGACTATGATAGTTTTTACAATTTACACAATTTA-CATCCCGGGTGACCCA
195 CATCCCGGATAGCTCGACAATGATAGTTTTTACAATTTACAAAATTTACCATCCCGAGTGACCCA
*
68143538 ACAACGATGGTTTTCATTATTTGCATATTCT
260 ACAACGATGGTTTTCATTATTTGAATATTCT
*
68143569 ACCATCTCGGGTGGCCAGGTAATGATGGTTCTCACTTCGATTTTCTACAATCCTAGATGGCCCAA
1 ACCATCCCGGGTGGCCA-GTAATGATGGTTCTCACTTCGATTTTCTACAATCCTAGATGGCCCAA
* ** *
68143634 CAACAATGGCTTCCACTATCTGTATATTCTACCATCTCGGATGTCTTGACAATGATGGTTTTCAT
65 CAACAATGGCTTCCACTATCTGTATATTCTACCATCTCGGATGTCTCGACAACAATGGTTTTCAC
*
68143699 AGTTTATGCAATTCATGATTCCAG-GTGGCAC-GACAGCAATGGTTTTCATTATTTGCACATTTT
130 AGTTTATGCAATTCATCA-TCCAGAGTGGC-CTGACAGCAATGGTTTTCATTATTTGCACATTTT
*
68143762 ACCATCCCGGATAGCTCGACAATGATAGTTTTTACAATTTACAAAATTTACCATCCCGAGTGGCC
193 ACCATCCCGGATAGCTCGACAATGATAGTTTTTACAATTTACAAAATTTACCATCCCGAGTGACC
*
68143827 CAACAATGATGGTTTTCATTATTTGAATATTCT
258 CAACAACGATGGTTTTCATTATTTGAATATTCT
68143860 ACCATCCCGGGTGGCTCAGTAATGATG
1 ACCATCCCGGGTGGC-CAGTAATGATG
68143887 ATTTTTACAA
Statistics
Matches: 292, Mismatches: 21, Indels: 9
0.91 0.07 0.03
Matches are distributed among these distances:
289 1 0.00
290 218 0.75
291 71 0.24
292 2 0.01
ACGTcount: A:0.26, C:0.23, G:0.17, T:0.34
Consensus pattern (290 bp):
ACCATCCCGGGTGGCCAGTAATGATGGTTCTCACTTCGATTTTCTACAATCCTAGATGGCCCAAC
AACAATGGCTTCCACTATCTGTATATTCTACCATCTCGGATGTCTCGACAACAATGGTTTTCACA
GTTTATGCAATTCATCATCCAGAGTGGCCTGACAGCAATGGTTTTCATTATTTGCACATTTTACC
ATCCCGGATAGCTCGACAATGATAGTTTTTACAATTTACAAAATTTACCATCCCGAGTGACCCAA
CAACGATGGTTTTCATTATTTGAATATTCT
Found at i:68143874 original size:49 final size:49
Alignment explanation
Indices: 68143447--68143941 Score: 161
Period size: 49 Copynumber: 10.2 Consensus size: 49
68143437 CCTGACAGCA
* * * * * * * *
68143447 ATGGTTTTCATTATTTGCATATTTTACCATCCCGGATAGCTCGACTATG
1 ATGGTTTTCACTATTTGAATATTCTACCATCCCGGGTGGCCCAACAATG
* * * * * *
68143496 ATAGTTTTTACAATTT-ACACAATT-TA-CATCCCGGGTGACCCAACAACG
1 ATGGTTTTCACTATTTGA-A-TATTCTACCATCCCGGGTGGCCCAACAATG
* * * **
68143544 ATGGTTTTCATTATTTGCATATTCTACCATCTCGGGTGG-CCAGGTAATG
1 ATGGTTTTCACTATTTGAATATTCTACCATCCCGGGTGGCCCA-ACAATG
* * * * ** * **
68143593 ATGGTTCTCAC--TTCG-ATTTTCTACAATCCTAGATGGCCCAACAACA
1 ATGGTTTTCACTATTTGAATATTCTACCATCCCGGGTGGCCCAACAATG
* * * * * * * ***
68143639 ATGGCTTCCACTATCTGTATATTCTACCATCTCGGATGTCTTGACAATG
1 ATGGTTTTCACTATTTGAATATTCTACCATCCCGGGTGGCCCAACAATG
* ** * * * * ***
68143688 ATGGTTTTCA-TAGTTTATGCA-ATTC-ATGATTCCAGGTGGCACGACAGCA
1 ATGGTTTTCACTA--TT-TGAATATTCTACCATCCCGGGTGGCCCAACAATG
* * * * * * * *
68143737 ATGGTTTTCATTATTTGCACATTTTACCATCCCGGATAGCTCGACAATG
1 ATGGTTTTCACTATTTGAATATTCTACCATCCCGGGTGGCCCAACAATG
* * * * * *
68143786 ATAGTTTTTACAATTTACAAAATT-TACCATCCCGAGTGGCCCAACAATG
1 ATGGTTTTCACTATTT-GAATATTCTACCATCCCGGGTGGCCCAACAATG
* * **
68143835 ATGGTTTTCATTATTTGAATATTCTACCATCCCGGGTGGCTCAGTAATG
1 ATGGTTTTCACTATTTGAATATTCTACCATCCCGGGTGGCCCAACAATG
* * * * * **
68143884 ATGATTTTTACAATTT-ACACAATT-TACCATCCCGAGTGGCCCGTCAATG
1 ATGGTTTTCACTATTTGA-A-TATTCTACCATCCCGGGTGGCCCAACAATG
68143933 ATGGTTTTC
1 ATGGTTTTC
68143942 CATATTTTGA
Statistics
Matches: 312, Mismatches: 114, Indels: 40
0.67 0.24 0.09
Matches are distributed among these distances:
46 25 0.08
47 13 0.04
48 48 0.15
49 206 0.66
50 17 0.05
51 3 0.01
ACGTcount: A:0.26, C:0.22, G:0.17, T:0.35
Consensus pattern (49 bp):
ATGGTTTTCACTATTTGAATATTCTACCATCCCGGGTGGCCCAACAATG
Found at i:68146836 original size:10 final size:10
Alignment explanation
Indices: 68146821--68146850 Score: 51
Period size: 10 Copynumber: 3.0 Consensus size: 10
68146811 ACGTTCTTTC
68146821 TGTTGTTCTT
1 TGTTGTTCTT
68146831 TGTTGTTCTT
1 TGTTGTTCTT
*
68146841 TATTGTTCTT
1 TGTTGTTCTT
68146851 CTTTTGGCAT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.03, C:0.10, G:0.17, T:0.70
Consensus pattern (10 bp):
TGTTGTTCTT
Found at i:68147078 original size:25 final size:25
Alignment explanation
Indices: 68147022--68147094 Score: 69
Period size: 25 Copynumber: 3.0 Consensus size: 25
68147012 ATACAAGCAT
* *
68147022 GTAAAT-GGGAAGCTCATGTGAGCT
1 GTAAATCGGGAAGCTCATGAGAGCC
*
68147046 G-AGTATCGGGAAGCTCATGAGAGCC
1 GTA-AATCGGGAAGCTCATGAGAGCC
* * *
68147071 GTAAATCGGGTAGCTGAGGAGAGC
1 GTAAATCGGGAAGCTCATGAGAGC
68147095 TATTAATCAG
Statistics
Matches: 39, Mismatches: 7, Indels: 5
0.76 0.14 0.10
Matches are distributed among these distances:
23 1 0.03
24 3 0.08
25 34 0.87
26 1 0.03
ACGTcount: A:0.29, C:0.15, G:0.37, T:0.19
Consensus pattern (25 bp):
GTAAATCGGGAAGCTCATGAGAGCC
Found at i:68149667 original size:30 final size:31
Alignment explanation
Indices: 68149633--68149801 Score: 156
Period size: 30 Copynumber: 5.7 Consensus size: 31
68149623 TTTTTTTTTG
*
68149633 CATTTTGACCCTTAAACTTTTCT-AAAATTA
1 CATTTTGACCCCTAAACTTTTCTCAAAATTA
*
68149663 CATTTTAACCCCTAAACTTTT-TCAAAATTA
1 CATTTTGACCCCTAAACTTTTCTCAAAATTA
** *
68149693 CATTTAAACCCCTAAA-TATTT-T-GAAATTA
1 CATTTTGACCCCTAAACT-TTTCTCAAAATTA
** *
68149722 CATTTCAACCTCTAAAC-TTTCTCAAAATTA
1 CATTTTGACCCCTAAACTTTTCTCAAAATTA
*
68149752 TATTTTGA-CCCTAAAC-TTTCTCAAAATTA
1 CATTTTGACCCCTAAACTTTTCTCAAAATTA
* * * *
68149781 CGTTTCGACCCCAAAAGTTTT
1 CATTTTGACCCCTAAACTTTT
68149802 GCTGCCATTA
Statistics
Matches: 116, Mismatches: 16, Indels: 13
0.80 0.11 0.09
Matches are distributed among these distances:
28 3 0.03
29 48 0.41
30 62 0.53
31 3 0.03
ACGTcount: A:0.35, C:0.22, G:0.04, T:0.39
Consensus pattern (31 bp):
CATTTTGACCCCTAAACTTTTCTCAAAATTA
Found at i:68149779 original size:59 final size:58
Alignment explanation
Indices: 68149633--68149792 Score: 178
Period size: 59 Copynumber: 2.7 Consensus size: 58
68149623 TTTTTTTTTG
* *
68149633 CATTTTGACCCTTAAACTTTTCTAAAATTACATTTTAACCCCTAAACTTTTTCAAAATTA
1 CATTTTGACCC-TAAACTTTTC-AAAATTACATTTCAACCCCTAAACTTTCTCAAAATTA
** ** *
68149693 CATTTAAACCCCTAAA-TATTTTGAAATTACATTTCAACCTCTAAACTTTCTCAAAATTA
1 CATTTTGA-CCCTAAACT-TTTCAAAATTACATTTCAACCCCTAAACTTTCTCAAAATTA
* * *
68149752 TATTTTGACCCTAAACTTTCTCAAAATTACGTTTCGACCCC
1 CATTTTGACCCTAAACTTT-TCAAAATTACATTTCAACCCC
68149793 AAAAGTTTTG
Statistics
Matches: 81, Mismatches: 15, Indels: 9
0.77 0.14 0.09
Matches are distributed among these distances:
58 9 0.11
59 56 0.69
60 13 0.16
61 3 0.04
ACGTcount: A:0.34, C:0.24, G:0.03, T:0.39
Consensus pattern (58 bp):
CATTTTGACCCTAAACTTTTCAAAATTACATTTCAACCCCTAAACTTTCTCAAAATTA
Found at i:68149790 original size:29 final size:28
Alignment explanation
Indices: 68149640--68149791 Score: 135
Period size: 29 Copynumber: 5.1 Consensus size: 28
68149630 TTGCATTTTG
*
68149640 ACCCTTAAACTTTTCTAAAATTACATTTTA
1 ACCC-TAAACTTTTC-AAAATTACATTTCA
*
68149670 ACCCCTAAACTTTTTCAAAATTACATTTAA
1 A-CCCTAAAC-TTTTCAAAATTACATTTCA
**
68149700 ACCCCTAAA-TATTTTGAAATTACATTTCA
1 A-CCCTAAACT-TTTCAAAATTACATTTCA
* **
68149729 ACCTCTAAACTTTCTCAAAATTATATTTTG
1 ACC-CTAAACTTT-TCAAAATTACATTTCA
* *
68149759 ACCCTAAACTTTCTCAAAATTACGTTTCG
1 ACCCTAAACTTT-TCAAAATTACATTTCA
68149788 ACCC
1 ACCC
68149792 CAAAAGTTTT
Statistics
Matches: 104, Mismatches: 12, Indels: 13
0.81 0.09 0.10
Matches are distributed among these distances:
28 3 0.03
29 50 0.48
30 43 0.41
31 8 0.08
ACGTcount: A:0.36, C:0.24, G:0.03, T:0.38
Consensus pattern (28 bp):
ACCCTAAACTTTTCAAAATTACATTTCA
Found at i:68150288 original size:16 final size:16
Alignment explanation
Indices: 68150267--68150333 Score: 63
Period size: 15 Copynumber: 4.4 Consensus size: 16
68150257 ATCGGGGAGG
68150267 AAGAAAGAAAGGAAGA
1 AAGAAAGAAAGGAAGA
68150283 AAGAAA-AAA-GAAGA
1 AAGAAAGAAAGGAAGA
*
68150297 AA-AAGAGAAAGAAAG-
1 AAGAA-AGAAAGGAAGA
*
68150312 AAG-AAGAAGAAGAAGA
1 AAGAAAGAA-AGGAAGA
68150328 AAGAAA
1 AAGAAA
68150334 AAGGAAAAAG
Statistics
Matches: 41, Mismatches: 3, Indels: 13
0.72 0.05 0.23
Matches are distributed among these distances:
13 2 0.05
14 12 0.29
15 13 0.32
16 12 0.29
17 2 0.05
ACGTcount: A:0.73, C:0.00, G:0.27, T:0.00
Consensus pattern (16 bp):
AAGAAAGAAAGGAAGA
Found at i:68150294 original size:19 final size:18
Alignment explanation
Indices: 68150270--68150353 Score: 72
Period size: 19 Copynumber: 4.8 Consensus size: 18
68150260 GGGGAGGAAG
68150270 AAAGAAAGGAAGAAAGAAA
1 AAAGAAA-GAAGAAAGAAA
*
68150289 AAAG-AAGAA-AAAG-AG
1 AAAGAAAGAAGAAAGAAA
68150304 AAAGAAAGAAG-AAGAAGA
1 AAAGAAAGAAGAAAGAA-A
68150322 AGAAGAAAGAA-AAAGGAAA
1 A-AAGAAAGAAGAAA-GAAA
*
68150341 AAGGAAA-AAGAAA
1 AAAGAAAGAAGAAA
68150354 AAGAAGAAAA
Statistics
Matches: 54, Mismatches: 3, Indels: 17
0.73 0.04 0.23
Matches are distributed among these distances:
15 5 0.09
16 12 0.22
17 6 0.11
18 11 0.20
19 17 0.31
20 3 0.06
ACGTcount: A:0.74, C:0.00, G:0.26, T:0.00
Consensus pattern (18 bp):
AAAGAAAGAAGAAAGAAA
Found at i:68150298 original size:22 final size:22
Alignment explanation
Indices: 68150271--68150362 Score: 102
Period size: 22 Copynumber: 4.3 Consensus size: 22
68150261 GGGAGGAAGA
68150271 AAGAAAGGAAGAAAGAAAAAAG
1 AAGAAAGGAAGAAAGAAAAAAG
* *
68150293 AAGAAA-AAGAGAAAGAAAGAAG
1 AAGAAAGGA-AGAAAGAAAAAAG
* *
68150315 AAGAAGAAGAAGAAAGAAAAAGG
1 AAGAA-AGGAAGAAAGAAAAAAG
68150338 AA-AAAGGAA-AAAG-AAAAAG
1 AAGAAAGGAAGAAAGAAAAAAG
68150357 AAGAAA
1 AAGAAA
68150363 AAAATAATAA
Statistics
Matches: 59, Mismatches: 7, Indels: 10
0.78 0.09 0.13
Matches are distributed among these distances:
19 7 0.12
20 7 0.12
21 5 0.08
22 25 0.42
23 14 0.24
24 1 0.02
ACGTcount: A:0.74, C:0.00, G:0.26, T:0.00
Consensus pattern (22 bp):
AAGAAAGGAAGAAAGAAAAAAG
Found at i:68150655 original size:13 final size:13
Alignment explanation
Indices: 68150637--68150678 Score: 68
Period size: 13 Copynumber: 3.3 Consensus size: 13
68150627 GCAGGCCAGA
68150637 AAAAAAAGAGAAG
1 AAAAAAAGAGAAG
*
68150650 AAAAAAAGGGAAG
1 AAAAAAAGAGAAG
68150663 AAAAAAAGAGAA-
1 AAAAAAAGAGAAG
68150675 AAAA
1 AAAA
68150679 GAAAAAAAGG
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
12 4 0.15
13 23 0.85
ACGTcount: A:0.79, C:0.00, G:0.21, T:0.00
Consensus pattern (13 bp):
AAAAAAAGAGAAG
Found at i:68150664 original size:16 final size:15
Alignment explanation
Indices: 68150634--68150702 Score: 63
Period size: 13 Copynumber: 4.6 Consensus size: 15
68150624 GAAGCAGGCC
* *
68150634 AGAAAAAAAAG-AGA
1 AGAAAAAAAGGAAAA
*
68150648 AGAAAAAAAGG--GA
1 AGAAAAAAAGGAAAA
68150661 AGAAAAAAAGAGAAAAA
1 AGAAAAAAAG-G-AAAA
68150678 AGAAAAAAAGGAAAA
1 AGAAAAAAAGGAAAA
68150693 ACGAAAAAAA
1 A-GAAAAAAA
68150703 AGGTTCAATT
Statistics
Matches: 48, Mismatches: 2, Indels: 8
0.83 0.03 0.14
Matches are distributed among these distances:
13 12 0.25
14 11 0.23
15 5 0.10
16 9 0.19
17 11 0.23
ACGTcount: A:0.78, C:0.01, G:0.20, T:0.00
Consensus pattern (15 bp):
AGAAAAAAAGGAAAA
Found at i:68150685 original size:8 final size:8
Alignment explanation
Indices: 68150660--68150702 Score: 59
Period size: 8 Copynumber: 5.2 Consensus size: 8
68150650 AAAAAAAGGG
68150660 AAGAAAAA
1 AAGAAAAA
68150668 AAGAGAAAA
1 AAGA-AAAA
68150677 AAGAAAAA
1 AAGAAAAA
*
68150685 AAGGAAAA
1 AAGAAAAA
*
68150693 ACGAAAAA
1 AAGAAAAA
68150701 AA
1 AA
68150703 AGGTTCAATT
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
8 22 0.73
9 8 0.27
ACGTcount: A:0.81, C:0.02, G:0.16, T:0.00
Consensus pattern (8 bp):
AAGAAAAA
Found at i:68150705 original size:17 final size:16
Alignment explanation
Indices: 68150660--68150702 Score: 68
Period size: 16 Copynumber: 2.6 Consensus size: 16
68150650 AAAAAAAGGG
68150660 AAGAAAAAAAGAGAAAA
1 AAGAAAAAAAG-GAAAA
68150677 AAGAAAAAAAGGAAAA
1 AAGAAAAAAAGGAAAA
*
68150693 ACGAAAAAAA
1 AAGAAAAAAA
68150703 AGGTTCAATT
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
16 14 0.56
17 11 0.44
ACGTcount: A:0.81, C:0.02, G:0.16, T:0.00
Consensus pattern (16 bp):
AAGAAAAAAAGGAAAA
Found at i:68150842 original size:6 final size:6
Alignment explanation
Indices: 68150833--68150884 Score: 58
Period size: 5 Copynumber: 9.0 Consensus size: 6
68150823 GTATTTATAT
68150833 TTTTAA TTTTTAA TTTTTAA -TTTAA -TTTAA TTTTAA TTTT-A TTTT-A
1 TTTTAA -TTTTAA -TTTTAA TTTTAA TTTTAA TTTTAA TTTTAA TTTTAA
68150879 TTTTAA
1 TTTTAA
68150885 ATACTTTTAA
Statistics
Matches: 43, Mismatches: 0, Indels: 5
0.90 0.00 0.10
Matches are distributed among these distances:
5 20 0.47
6 10 0.23
7 13 0.30
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (6 bp):
TTTTAA
Found at i:68150843 original size:7 final size:7
Alignment explanation
Indices: 68150826--68150855 Score: 51
Period size: 7 Copynumber: 4.1 Consensus size: 7
68150816 TATTTTTGTA
68150826 TTTATATT
1 TTTA-ATT
68150834 TTTAATT
1 TTTAATT
68150841 TTTAATT
1 TTTAATT
68150848 TTTAATT
1 TTTAATT
68150855 T
1 T
68150856 AATTTAATTT
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
7 18 0.82
8 4 0.18
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (7 bp):
TTTAATT
Found at i:68150868 original size:16 final size:16
Alignment explanation
Indices: 68150841--68150884 Score: 61
Period size: 16 Copynumber: 2.7 Consensus size: 16
68150831 ATTTTTAATT
68150841 TTTAATTTTTAATTTAA
1 TTTAA-TTTTAATTTAA
*
68150858 TTTAATTTTAATTTTA
1 TTTAATTTTAATTTAA
*
68150874 TTTTATTTTAA
1 TTTAATTTTAA
68150885 ATACTTTTAA
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
16 20 0.80
17 5 0.20
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (16 bp):
TTTAATTTTAATTTAA
Found at i:68151045 original size:18 final size:17
Alignment explanation
Indices: 68151010--68151072 Score: 54
Period size: 18 Copynumber: 3.5 Consensus size: 17
68151000 AAAATATTCA
* *
68151010 AAAAAATCTCATGATTTC
1 AAAAAATTTCAT-CTTTC
68151028 AAAAAATTTCTATCTTTC
1 AAAAAATTTC-ATCTTTC
** *
68151046 AAAATTTTTCATGTCTTC
1 AAAAAATTTCATCT-TTC
68151064 AAAAAATTT
1 AAAAAATTT
68151073 TTCTCGTGTT
Statistics
Matches: 36, Mismatches: 7, Indels: 4
0.77 0.15 0.09
Matches are distributed among these distances:
17 3 0.08
18 31 0.86
19 2 0.06
ACGTcount: A:0.41, C:0.14, G:0.03, T:0.41
Consensus pattern (17 bp):
AAAAAATTTCATCTTTC
Found at i:68151249 original size:18 final size:17
Alignment explanation
Indices: 68151229--68151322 Score: 107
Period size: 17 Copynumber: 5.4 Consensus size: 17
68151219 TTGTGTAAAA
68151229 AAAAATTCCCGTGTTTC
1 AAAAATTCCCGTGTTTC
***
68151246 AAAAATTTTTGTGTTTTC
1 AAAAATTCCCGTG-TTTC
*
68151264 AAAAATTCTCGTGTTTTC
1 AAAAATTCCCGTG-TTTC
* *
68151282 AAAAATTTCAGTGTTTC
1 AAAAATTCCCGTGTTTC
*
68151299 AAAAATTCCCGTGTTTT
1 AAAAATTCCCGTGTTTC
68151316 AAAAATT
1 AAAAATT
68151323 TCTGTATTTT
Statistics
Matches: 65, Mismatches: 11, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
17 35 0.54
18 30 0.46
ACGTcount: A:0.33, C:0.14, G:0.11, T:0.43
Consensus pattern (17 bp):
AAAAATTCCCGTGTTTC
Found at i:68151282 original size:36 final size:36
Alignment explanation
Indices: 68151229--68151563 Score: 224
Period size: 36 Copynumber: 9.2 Consensus size: 36
68151219 TTGTGTAAAA
* *
68151229 AAAAATTCCCGTG-TTTCAAAAATTTTTGTGTTTTC
1 AAAAATTCTCGTGTTTTCAAAAATTTCTGTGTTTTC
*
68151264 AAAAATTCTCGTGTTTTCAAAAATTTCAGTG-TTTC
1 AAAAATTCTCGTGTTTTCAAAAATTTCTGTGTTTTC
* *
68151299 AAAAATTCCCGTGTTTT-AAAAATTTCTGTATTTTC
1 AAAAATTCTCGTGTTTTCAAAAATTTCTGTGTTTTC
* * * **
68151334 AGAAATTTTCGTATTTTCAAAAAAAAATCTGTG-TTTC
1 AAAAATTCTCGTGTTTTC--AAAAATTTCTGTGTTTTC
* * *
68151371 AAAAATCCTCTTGTTTTCAAAAAAATTTGCTTTGTTTTC
1 AAAAATTCTCGTGTTTTC--AAAAATTT-CTGTGTTTTC
* * * * *
68151410 AAAAGTTTTCGT-ATTTCGGAAATTTTCT-TGTTTTC
1 AAAAATTCTCGTGTTTTC-AAAAATTTCTGTGTTTTC
* * *
68151445 AAAAAAATTC-CGTG-TTTCATAAATTTCCGTATTTTC
1 --AAAAATTCTCGTGTTTTCAAAAATTTCTGTGTTTTC
* *
68151481 AAAAAAATTC-CGTG-TTTCATAAATTTCCGTGTTTTC
1 --AAAAATTCTCGTGTTTTCAAAAATTTCTGTGTTTTC
* * *
68151517 AAAAAAAATTCCCGTTTTCTTAAAAAATTT-TCGTGTTTTC
1 ---AAAAATTCTCGTGTT-TTCAAAAATTTCT-GTGTTTTC
68151557 AAAAATT
1 AAAAATT
68151564 TTCTTAAAAA
Statistics
Matches: 243, Mismatches: 41, Indels: 30
0.77 0.13 0.10
Matches are distributed among these distances:
34 11 0.05
35 62 0.26
36 65 0.27
37 54 0.22
38 21 0.09
39 13 0.05
40 17 0.07
ACGTcount: A:0.32, C:0.14, G:0.10, T:0.44
Consensus pattern (36 bp):
AAAAATTCTCGTGTTTTCAAAAATTTCTGTGTTTTC
Found at i:68151493 original size:19 final size:18
Alignment explanation
Indices: 68151440--68151561 Score: 95
Period size: 17 Copynumber: 6.6 Consensus size: 18
68151430 AATTTTCTTG
68151440 TTTTCAAAAAAATTCCGT
1 TTTTCAAAAAAATTCCGT
* * *
68151458 GTTTC-ATAAATTTCCGT
1 TTTTCAAAAAAATTCCGT
68151475 ATTTTCAAAAAAATTCCGT
1 -TTTTCAAAAAAATTCCGT
* * *
68151494 GTTTC-ATAAATTTCCGT
1 TTTTCAAAAAAATTCCGT
68151511 GTTTTCAAAAAAAATTCCCGT
1 -TTTTC-AAAAAAATT-CCGT
* * *
68151532 TTTCTTAAAAAATTTTCGT
1 TTT-TCAAAAAAATTCCGT
68151551 GTTTTCAAAAA
1 -TTTTCAAAAA
68151562 TTTTCTTAAA
Statistics
Matches: 80, Mismatches: 16, Indels: 15
0.72 0.14 0.14
Matches are distributed among these distances:
17 20 0.25
18 16 0.20
19 19 0.24
20 20 0.25
21 5 0.06
ACGTcount: A:0.34, C:0.16, G:0.08, T:0.42
Consensus pattern (18 bp):
TTTTCAAAAAAATTCCGT
Found at i:68151560 original size:18 final size:18
Alignment explanation
Indices: 68151238--68151597 Score: 199
Period size: 18 Copynumber: 20.1 Consensus size: 18
68151228 AAAAAATTCC
68151238 CGTG-TTTCAAAAATTTT
1 CGTGTTTTCAAAAATTTT
* *
68151255 TGTGTTTTCAAAAATTCT
1 CGTGTTTTCAAAAATTTT
68151273 CGTGTTTTCAAAAA-TTT
1 CGTGTTTTCAAAAATTTT
**
68151290 CAGTG-TTTCAAAAATTCC
1 C-GTGTTTTCAAAAATTTT
68151308 CGTGTTTT-AAAAA-TTT
1 CGTGTTTTCAAAAATTTT
* *
68151324 CTGTATTTTCAGAAATTTT
1 C-GTGTTTTCAAAAATTTT
* ***
68151343 CGTATTTTCAAAAAAAAAT
1 CGTGTTTTC-AAAAATTTT
**
68151362 C-TGTGTTTCAAAAATCCT
1 CGTGT-TTTCAAAAATTTT
* *
68151380 CTTGTTTTCAAAAAAATTTG
1 CGTGTTTTC--AAAAATTTT
* *
68151400 CTTTGTTTTCAAAAGTTTT
1 C-GTGTTTTCAAAAATTTT
* **
68151419 CGT-ATTTCGGAAATTTT
1 CGTGTTTTCAAAAATTTT
* * *
68151436 CTTGTTTTCAAAAAAATTC
1 CGTGTTTTC-AAAAATTTT
* *
68151455 CGTG-TTTCATAAATTTC
1 CGTGTTTTCAAAAATTTT
* * *
68151472 CGTATTTTCAAAAAAATTC
1 CGTGTTTTC-AAAAATTTT
* *
68151491 CGTG-TTTCATAAATTTC
1 CGTGTTTTCAAAAATTTT
**
68151508 CGTGTTTTCAAAAAAAATTCC
1 CGTGTTTTC---AAAAATTTT
* *
68151529 CGTTTTCTTAAAAAATTTT
1 CGTGTT-TTCAAAAATTTT
68151548 CGTGTTTTCAAAAATTTT
1 CGTGTTTTCAAAAATTTT
*
68151566 C-----TTAAAAAATTTT
1 CGTGTTTTCAAAAATTTT
68151579 CGTGTTTTCAAAAATTTT
1 CGTGTTTTCAAAAATTTT
68151597 C
1 C
68151598 TTAAATCCTC
Statistics
Matches: 263, Mismatches: 53, Indels: 53
0.71 0.14 0.14
Matches are distributed among these distances:
13 12 0.05
16 2 0.01
17 62 0.24
18 103 0.39
19 55 0.21
20 7 0.03
21 20 0.08
22 2 0.01
ACGTcount: A:0.32, C:0.14, G:0.10, T:0.45
Consensus pattern (18 bp):
CGTGTTTTCAAAAATTTT
Found at i:68151566 original size:31 final size:31
Alignment explanation
Indices: 68151531--68151602 Score: 144
Period size: 31 Copynumber: 2.3 Consensus size: 31
68151521 AAAATTCCCG
68151531 TTTTCTTAAAAAATTTTCGTGTTTTCAAAAA
1 TTTTCTTAAAAAATTTTCGTGTTTTCAAAAA
68151562 TTTTCTTAAAAAATTTTCGTGTTTTCAAAAA
1 TTTTCTTAAAAAATTTTCGTGTTTTCAAAAA
68151593 TTTTCTTAAA
1 TTTTCTTAAA
68151603 TCCTCGTGTT
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 41 1.00
ACGTcount: A:0.35, C:0.10, G:0.06, T:0.50
Consensus pattern (31 bp):
TTTTCTTAAAAAATTTTCGTGTTTTCAAAAA
Found at i:68151666 original size:21 final size:21
Alignment explanation
Indices: 68151627--68151666 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
68151617 ATCTTATCAA
* *
68151627 AAATTTTATGTTTTCAAAAAC
1 AAATTTTATGTCTTAAAAAAC
*
68151648 AAATTTTGTGTCTTAAAAA
1 AAATTTTATGTCTTAAAAA
68151667 TTTTCGTGTT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.42, C:0.07, G:0.07, T:0.42
Consensus pattern (21 bp):
AAATTTTATGTCTTAAAAAAC
Found at i:68151704 original size:22 final size:20
Alignment explanation
Indices: 68151669--68151724 Score: 85
Period size: 21 Copynumber: 2.7 Consensus size: 20
68151659 CTTAAAAATT
*
68151669 TTCGTGTTTCAAAAAGAAAA
1 TTCGTGTTTCAAAAAAAAAA
68151689 TTCGTGTTTTCAAAAAAAAAA
1 TTCGTG-TTTCAAAAAAAAAA
68151710 TCTCGTGTTTCAAAA
1 T-TCGTGTTTCAAAA
68151725 TTTTCGTGTT
Statistics
Matches: 33, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
20 6 0.18
21 22 0.67
22 5 0.15
ACGTcount: A:0.41, C:0.12, G:0.12, T:0.34
Consensus pattern (20 bp):
TTCGTGTTTCAAAAAAAAAA
Found at i:68151742 original size:36 final size:35
Alignment explanation
Indices: 68151702--68151797 Score: 122
Period size: 36 Copynumber: 2.6 Consensus size: 35
68151692 GTGTTTTCAA
*
68151702 AAAAAAAATCTCGTGTTTCAAAATT-TTCGTGTTTTT
1 AAAAAAAAT-TCGTGTTTCAAAATTCTT-GTATTTTT
*
68151738 AAAAAAAGTTTCGTGTTTCTAAAATTCTTGTATTTTT
1 AAAAAAA-ATTCGTGTTTC-AAAATTCTTGTATTTTT
68151775 AAAAAAAATTCGTGTTTTCAAAA
1 AAAAAAAATTCGTG-TTTCAAAA
68151798 AAAAGAAAAA
Statistics
Matches: 53, Mismatches: 3, Indels: 8
0.83 0.05 0.12
Matches are distributed among these distances:
36 26 0.49
37 25 0.47
38 2 0.04
ACGTcount: A:0.38, C:0.09, G:0.10, T:0.43
Consensus pattern (35 bp):
AAAAAAAATTCGTGTTTCAAAATTCTTGTATTTTT
Found at i:68151762 original size:37 final size:35
Alignment explanation
Indices: 68151703--68151797 Score: 120
Period size: 37 Copynumber: 2.6 Consensus size: 35
68151693 TGTTTTCAAA
* *
68151703 AAAAAAATCTCGTGTTTCAAAATT-TTCGTGTTTTT
1 AAAAAAATTTCGTGTTTCAAAATTCTT-GTATTTTT
68151738 AAAAAAAGTTTCGTGTTTCTAAAATTCTTGTATTTTT
1 AAAAAAA-TTTCGTGTTTC-AAAATTCTTGTATTTTT
*
68151775 AAAAAAAATTCGTGTTTTCAAAA
1 AAAAAAATTTCGTG-TTTCAAAA
68151798 AAAAGAAAAA
Statistics
Matches: 53, Mismatches: 3, Indels: 7
0.84 0.05 0.11
Matches are distributed among these distances:
35 7 0.13
36 20 0.38
37 24 0.45
38 2 0.04
ACGTcount: A:0.37, C:0.09, G:0.11, T:0.43
Consensus pattern (35 bp):
AAAAAAATTTCGTGTTTCAAAATTCTTGTATTTTT
Found at i:68151798 original size:20 final size:20
Alignment explanation
Indices: 68151669--68151801 Score: 79
Period size: 20 Copynumber: 7.0 Consensus size: 20
68151659 CTTAAAAATT
68151669 TTCGTG-TTTCAAAAAGAAAA
1 TTCGTGTTTTCAAAAA-AAAA
68151689 TTCGTGTTTTCAAAAAAAAAA
1 TTCGTGTTTTC-AAAAAAAAA
**
68151710 TCTCGTG-TTTC---AAAATT
1 T-TCGTGTTTTCAAAAAAAAA
* **
68151727 TTCGTGTTTTTAAAAAAAGT
1 TTCGTGTTTTCAAAAAAAAA
*
68151747 TTCGTG-TTTC----TAAAA
1 TTCGTGTTTTCAAAAAAAAA
* **
68151762 TTCTTGTATTTTTAAAAAAAA
1 TTCGTGT-TTTCAAAAAAAAA
68151783 TTCGTGTTTTCAAAAAAAA
1 TTCGTGTTTTCAAAAAAAA
68151802 GAAAAAGTTG
Statistics
Matches: 86, Mismatches: 14, Indels: 26
0.68 0.11 0.21
Matches are distributed among these distances:
15 7 0.08
16 5 0.06
17 11 0.13
19 3 0.03
20 27 0.31
21 23 0.27
22 10 0.12
ACGTcount: A:0.38, C:0.10, G:0.11, T:0.41
Consensus pattern (20 bp):
TTCGTGTTTTCAAAAAAAAA
Found at i:68152485 original size:15 final size:15
Alignment explanation
Indices: 68152467--68152505 Score: 71
Period size: 15 Copynumber: 2.7 Consensus size: 15
68152457 TTACGTTTGA
68152467 GGGTTCTTTGTTTTC
1 GGGTTCTTTGTTTTC
68152482 GGGTTCTTTGTTTTC
1 GGGTTCTTTGTTTTC
68152497 GGGTT-TTTG
1 GGGTTCTTTG
68152506 GGGTTTAGTT
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
14 4 0.17
15 20 0.83
ACGTcount: A:0.00, C:0.10, G:0.31, T:0.59
Consensus pattern (15 bp):
GGGTTCTTTGTTTTC
Found at i:68154500 original size:21 final size:22
Alignment explanation
Indices: 68154476--68154518 Score: 61
Period size: 23 Copynumber: 2.0 Consensus size: 22
68154466 TATAAAATGT
68154476 ATTATA-AAAATTAAATAAAAA
1 ATTATATAAAATTAAATAAAAA
*
68154497 ATTATATTAATATTAAATAAAA
1 ATTATA-TAAAATTAAATAAAA
68154519 TAAAAACCCT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 6 0.32
23 13 0.68
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (22 bp):
ATTATATAAAATTAAATAAAAA
Found at i:68154962 original size:19 final size:20
Alignment explanation
Indices: 68154933--68154972 Score: 64
Period size: 19 Copynumber: 2.0 Consensus size: 20
68154923 GTTTATTTCA
*
68154933 TTTTATATTAATATAATTAT
1 TTTTATATTAATATAAATAT
68154953 TTTTAT-TTAATATAAATAT
1 TTTTATATTAATATAAATAT
68154972 T
1 T
68154973 AAAAAATTAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 13 0.68
20 6 0.32
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (20 bp):
TTTTATATTAATATAAATAT
Found at i:68155045 original size:25 final size:23
Alignment explanation
Indices: 68154992--68155051 Score: 70
Period size: 22 Copynumber: 2.6 Consensus size: 23
68154982 TATTACATTT
*
68154992 TATATTTT-TAATAATTTTAAAT
1 TATATTTTATAATAATTTTAAAA
68155014 TAT-TTTTATAATAATTATTAAGAA
1 TATATTTTATAATAATT-TTAA-AA
*
68155038 TATATTTTAAAATA
1 TATATTTTATAATA
68155052 TCATAATAAT
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
21 4 0.12
22 11 0.34
23 4 0.12
24 4 0.12
25 9 0.28
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.53
Consensus pattern (23 bp):
TATATTTTATAATAATTTTAAAA
Found at i:68155610 original size:24 final size:26
Alignment explanation
Indices: 68155564--68155613 Score: 77
Period size: 24 Copynumber: 2.0 Consensus size: 26
68155554 ATAAAAATTA
68155564 ACCAAAATATCATAACTTTTTTTATTT
1 ACCAAAATAT-ATAACTTTTTTTATTT
68155591 ACCAAAATAT-T-ACTTTTTTTATT
1 ACCAAAATATATAACTTTTTTTATT
68155614 ATTTACGAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
24 12 0.52
25 1 0.04
27 10 0.43
ACGTcount: A:0.36, C:0.14, G:0.00, T:0.50
Consensus pattern (26 bp):
ACCAAAATATATAACTTTTTTTATTT
Found at i:68155743 original size:27 final size:27
Alignment explanation
Indices: 68155712--68155782 Score: 97
Period size: 27 Copynumber: 2.6 Consensus size: 27
68155702 CACATTGGCT
* **
68155712 GCACCAAAGGTGCCAAAGAGATTGGTG
1 GCACCAATGGTGCCAAAGAGATTGCCG
*
68155739 GCACCAATGGTGCCAAAGTGATTGCCG
1 GCACCAATGGTGCCAAAGAGATTGCCG
*
68155766 GCTCCAATGGTGCCAAA
1 GCACCAATGGTGCCAAA
68155783 TGACTAAAAT
Statistics
Matches: 39, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 39 1.00
ACGTcount: A:0.30, C:0.24, G:0.30, T:0.17
Consensus pattern (27 bp):
GCACCAATGGTGCCAAAGAGATTGCCG
Found at i:68156131 original size:19 final size:19
Alignment explanation
Indices: 68156072--68156132 Score: 70
Period size: 19 Copynumber: 3.2 Consensus size: 19
68156062 TCTAATTAAG
68156072 TAATAACTCTATTTTAATTT
1 TAATAACTCTATTTTAA-TT
* * *
68156092 TATATAA-ACTATTCTCATT
1 TA-ATAACTCTATTTTAATT
68156111 TAATAACTCTATTTTAATT
1 TAATAACTCTATTTTAATT
68156130 TAA
1 TAA
68156133 ATGAGAATAG
Statistics
Matches: 33, Mismatches: 6, Indels: 5
0.75 0.14 0.11
Matches are distributed among these distances:
18 4 0.12
19 16 0.48
20 9 0.27
21 4 0.12
ACGTcount: A:0.38, C:0.11, G:0.00, T:0.51
Consensus pattern (19 bp):
TAATAACTCTATTTTAATT
Found at i:68156443 original size:37 final size:37
Alignment explanation
Indices: 68156396--68156466 Score: 133
Period size: 37 Copynumber: 1.9 Consensus size: 37
68156386 AGTATTACTT
68156396 AATAGTTTATTAAATTAAAATAGAGTTATTAAATGAG
1 AATAGTTTATTAAATTAAAATAGAGTTATTAAATGAG
*
68156433 AATATTTTATTAAATTAAAATAGAGTTATTAAAT
1 AATAGTTTATTAAATTAAAATAGAGTTATTAAAT
68156467 AAAAAAATGA
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 33 1.00
ACGTcount: A:0.49, C:0.00, G:0.10, T:0.41
Consensus pattern (37 bp):
AATAGTTTATTAAATTAAAATAGAGTTATTAAATGAG
Found at i:68156454 original size:18 final size:18
Alignment explanation
Indices: 68156396--68156470 Score: 71
Period size: 18 Copynumber: 4.1 Consensus size: 18
68156386 AGTATTACTT
*
68156396 AATAGTTTATTAAATTAA
1 AATAATTTATTAAATTAA
* * *
68156414 AATAGAGTTATTAAATGAG
1 AATA-ATTTATTAAATTAA
*
68156433 AATATTTTATTAAATTAA
1 AATAATTTATTAAATTAA
*
68156451 AATAGAGTTATTAAA-TAA
1 AATA-ATTTATTAAATTAA
68156469 AA
1 AA
68156471 AAATGAGTTG
Statistics
Matches: 45, Mismatches: 10, Indels: 4
0.76 0.17 0.07
Matches are distributed among these distances:
18 23 0.51
19 22 0.49
ACGTcount: A:0.52, C:0.00, G:0.09, T:0.39
Consensus pattern (18 bp):
AATAATTTATTAAATTAA
Found at i:68156471 original size:19 final size:19
Alignment explanation
Indices: 68156402--68156470 Score: 88
Period size: 19 Copynumber: 3.7 Consensus size: 19
68156392 ACTTAATAGT
68156402 TTATTAAATTAAAATAGAG
1 TTATTAAATTAAAATAGAG
* * **
68156421 TTATTAAATGAGAATA-TT
1 TTATTAAATTAAAATAGAG
68156439 TTATTAAATTAAAATAGAG
1 TTATTAAATTAAAATAGAG
68156458 TTATTAAA-TAAAA
1 TTATTAAATTAAAA
68156471 AAATGAGTTG
Statistics
Matches: 41, Mismatches: 8, Indels: 3
0.79 0.15 0.06
Matches are distributed among these distances:
18 19 0.46
19 22 0.54
ACGTcount: A:0.52, C:0.00, G:0.09, T:0.39
Consensus pattern (19 bp):
TTATTAAATTAAAATAGAG
Found at i:68156478 original size:20 final size:19
Alignment explanation
Indices: 68156402--68156479 Score: 59
Period size: 19 Copynumber: 4.1 Consensus size: 19
68156392 ACTTAATAGT
* *
68156402 TTATTAAATTAAAATAGAG
1 TTATTAAATAAAAAAAGAG
* * * **
68156421 TTATTAAATGAGAATA-TT
1 TTATTAAATAAAAAAAGAG
* *
68156439 TTATTAAATTAAAATAGAG
1 TTATTAAATAAAAAAAGAG
68156458 TTATTAAATAAAAAAATGAG
1 TTATTAAATAAAAAAA-GAG
68156478 TT
1 TT
68156480 GAAGGGGAAT
Statistics
Matches: 47, Mismatches: 10, Indels: 3
0.78 0.17 0.05
Matches are distributed among these distances:
18 14 0.30
19 28 0.60
20 5 0.11
ACGTcount: A:0.51, C:0.00, G:0.10, T:0.38
Consensus pattern (19 bp):
TTATTAAATAAAAAAAGAG
Found at i:68156622 original size:27 final size:27
Alignment explanation
Indices: 68156545--68156623 Score: 106
Period size: 27 Copynumber: 2.9 Consensus size: 27
68156535 AATTTTAGTC
* *
68156545 CTTTGGCACCATTGGTGCCGGCAGTCA
1 CTTTGGCACCATTGGTGCCGCCAATCA
* *
68156572 CTTTGGCACCATTGGTGCCACCAATCT
1 CTTTGGCACCATTGGTGCCGCCAATCA
68156599 CTTTGGCA-CATTTGGTGCCGCCAAT
1 CTTTGGCACCA-TTGGTGCCGCCAAT
68156624 GTAATTAGCC
Statistics
Matches: 46, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
26 2 0.04
27 44 0.96
ACGTcount: A:0.16, C:0.30, G:0.24, T:0.29
Consensus pattern (27 bp):
CTTTGGCACCATTGGTGCCGCCAATCA
Found at i:68156745 original size:26 final size:27
Alignment explanation
Indices: 68156687--68156753 Score: 86
Period size: 26 Copynumber: 2.6 Consensus size: 27
68156677 TTTTATTTTT
*
68156687 TTAT-ATATTTTCGTAAATAATAAAAA
1 TTATAATATTTTGGTAAATAATAAAAA
*
68156713 -AAGTAATATTTTGGTAAATAA-AAAAA
1 TTA-TAATATTTTGGTAAATAATAAAAA
68156739 TTATAATATTTTGGT
1 TTATAATATTTTGGT
68156754 TAATTTTTAT
Statistics
Matches: 35, Mismatches: 3, Indels: 6
0.80 0.07 0.14
Matches are distributed among these distances:
25 1 0.03
26 18 0.51
27 16 0.46
ACGTcount: A:0.48, C:0.01, G:0.09, T:0.42
Consensus pattern (27 bp):
TTATAATATTTTGGTAAATAATAAAAA
Found at i:68162658 original size:13 final size:13
Alignment explanation
Indices: 68162640--68162664 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
68162630 TTTTAAAATT
68162640 TTTATAACTTTTG
1 TTTATAACTTTTG
68162653 TTTATAACTTTT
1 TTTATAACTTTT
68162665 ATGCTTTTTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.08, G:0.04, T:0.64
Consensus pattern (13 bp):
TTTATAACTTTTG
Found at i:68164541 original size:2 final size:2
Alignment explanation
Indices: 68164534--68164582 Score: 98
Period size: 2 Copynumber: 24.5 Consensus size: 2
68164524 AAGCCACACT
68164534 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
68164576 TA TA TA T
1 TA TA TA T
68164583 CAATTTTTTT
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 47 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:68165223 original size:25 final size:25
Alignment explanation
Indices: 68165187--68165234 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
68165177 GCTCTCTCTC
**
68165187 GAGCCATATAATGGGAAGCTTATGT
1 GAGCCATATAATGAAAAGCTTATGT
*
68165212 GAGCCATGTAATGAAAAGCTTAT
1 GAGCCATATAATGAAAAGCTTAT
68165235 TCGGGCTGTA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.35, C:0.12, G:0.25, T:0.27
Consensus pattern (25 bp):
GAGCCATATAATGAAAAGCTTATGT
Found at i:68165361 original size:73 final size:74
Alignment explanation
Indices: 68165249--68165429 Score: 176
Period size: 72 Copynumber: 2.5 Consensus size: 74
68165239 GCTGTATAAC
* * * * **
68165249 AGGAAGCTCA-TAAGAGCCA--TAATCAGGAAGCTCATGCGAGCCAATAACGGGTAA-CTTTGAA
1 AGGAAGCTCACGAAGAGCCATTTAA-CGGGAAGTTCAAGCGAGCC-ATAACGGG-AAGCTCCGAA
*
68165310 GAGCCATTAA-T
63 GAGCCAATAATT
* * * * *
68165321 AGGAAGCTC-CGAATATCCATTTATCGGGAAGTTCAAGCGAGCCATATCGGGAAGCTCCGGAGAG
1 AGGAAGCTCACGAAGAGCCATTTAACGGGAAGTTCAAGCGAGCCATAACGGGAAGCTCCGAAGAG
68165385 CCAATAATT
66 CCAATAATT
*
68165394 AGGAAGCTCACGAAGAGCCATTTAACGGGACGTTCA
1 AGGAAGCTCACGAAGAGCCATTTAACGGGAAGTTCA
68165430 TAATAGCTGC
Statistics
Matches: 87, Mismatches: 16, Indels: 10
0.77 0.14 0.09
Matches are distributed among these distances:
71 2 0.02
72 35 0.40
73 26 0.30
74 24 0.28
ACGTcount: A:0.34, C:0.21, G:0.25, T:0.19
Consensus pattern (74 bp):
AGGAAGCTCACGAAGAGCCATTTAACGGGAAGTTCAAGCGAGCCATAACGGGAAGCTCCGAAGAG
CCAATAATT
Found at i:68173997 original size:25 final size:25
Alignment explanation
Indices: 68173967--68174016 Score: 91
Period size: 25 Copynumber: 2.0 Consensus size: 25
68173957 TTTCTAATAA
68173967 AAATATTAACTAAAATGTTAAATTT
1 AAATATTAACTAAAATGTTAAATTT
*
68173992 AAATATTGACTAAAATGTTAAATTT
1 AAATATTAACTAAAATGTTAAATTT
68174017 TTAAACACAA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.50, C:0.04, G:0.06, T:0.40
Consensus pattern (25 bp):
AAATATTAACTAAAATGTTAAATTT
Found at i:68183588 original size:26 final size:27
Alignment explanation
Indices: 68183559--68183612 Score: 83
Period size: 26 Copynumber: 2.0 Consensus size: 27
68183549 AGGTAATTTT
68183559 CTTTTATTTGCTTAGTTCATGAC-ATG
1 CTTTTATTTGCTTAGTTCATGACTATG
* *
68183585 CTTTTCTTTGCTTATTTCATGACTATG
1 CTTTTATTTGCTTAGTTCATGACTATG
68183612 C
1 C
68183613 AATGATTGTT
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.17, C:0.19, G:0.13, T:0.52
Consensus pattern (27 bp):
CTTTTATTTGCTTAGTTCATGACTATG
Found at i:68186927 original size:22 final size:22
Alignment explanation
Indices: 68186896--68186938 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
68186886 TATAAATCAA
*
68186896 ATTTGTTTTAATCATTCATGCT
1 ATTTGCTTTAATCATTCATGCT
68186918 ATTTGCTTTAATCATTCATGC
1 ATTTGCTTTAATCATTCATGC
68186939 ACTCAAATCG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.23, C:0.16, G:0.09, T:0.51
Consensus pattern (22 bp):
ATTTGCTTTAATCATTCATGCT
Found at i:68189633 original size:20 final size:20
Alignment explanation
Indices: 68189608--68189659 Score: 61
Period size: 20 Copynumber: 2.6 Consensus size: 20
68189598 GTGGGGGTCA
*
68189608 ACACGCCTGT-TGGAAGAGAC
1 ACACGCCCGTGTGGAA-AGAC
*
68189628 ACACGCCCGTGTGGAAAGGC
1 ACACGCCCGTGTGGAAAGAC
*
68189648 ACACGACCGTGT
1 ACACGCCCGTGT
68189660 AACTCTCTGT
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
20 23 0.82
21 5 0.18
ACGTcount: A:0.27, C:0.29, G:0.31, T:0.13
Consensus pattern (20 bp):
ACACGCCCGTGTGGAAAGAC
Found at i:68193925 original size:11 final size:11
Alignment explanation
Indices: 68193908--68193938 Score: 53
Period size: 11 Copynumber: 2.8 Consensus size: 11
68193898 AAACACTTAA
68193908 AAAAATAAATC
1 AAAAATAAATC
*
68193919 TAAAATAAATC
1 AAAAATAAATC
68193930 AAAAATAAA
1 AAAAATAAA
68193939 CTACTCCCTC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.74, C:0.06, G:0.00, T:0.19
Consensus pattern (11 bp):
AAAAATAAATC
Found at i:68195185 original size:19 final size:19
Alignment explanation
Indices: 68195144--68195186 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 19
68195134 ATTACGAAAT
*
68195144 AAAATAAAATAACTAGAAG
1 AAAATAAAATAACGAGAAG
*
68195163 AAAATAAATTAACGACGAA-
1 AAAATAAAATAACGA-GAAG
68195182 AAAAT
1 AAAAT
68195187 CAGTTAACAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
19 18 0.86
20 3 0.14
ACGTcount: A:0.67, C:0.07, G:0.09, T:0.16
Consensus pattern (19 bp):
AAAATAAAATAACGAGAAG
Found at i:68195738 original size:2 final size:2
Alignment explanation
Indices: 68195731--68195766 Score: 63
Period size: 2 Copynumber: 18.0 Consensus size: 2
68195721 GATAAACTAG
*
68195731 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AA AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
68195767 TGGATTTTCA
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:68196847 original size:54 final size:55
Alignment explanation
Indices: 68196726--68196856 Score: 140
Period size: 54 Copynumber: 2.4 Consensus size: 55
68196716 AAGACTAGTA
**
68196726 TTTGTGGAAAAATATGAAAGA-TTAGTTTTTGTGGTGAAATATGGAAGAATAGCC
1 TTTGTGGAAAAATATGAAAGAGTTAGTTTTTGTGGCAAAATATGGAAGAATAGCC
* ** * * * *
68196780 GTTGCCGTAAAATATGAAAGAGTT-GTTTTTGTGGCAAAATATGTAATAGTAGCC
1 TTTGTGGAAAAATATGAAAGAGTTAGTTTTTGTGGCAAAATATGGAAGAATAGCC
** *
68196834 TTTGTGGCGAAATATGTAAGAGT
1 TTTGTGGAAAAATATGAAAGAGT
68196857 AATGTTTGTC
Statistics
Matches: 61, Mismatches: 15, Indels: 2
0.78 0.19 0.03
Matches are distributed among these distances:
54 59 0.97
55 2 0.03
ACGTcount: A:0.34, C:0.06, G:0.26, T:0.34
Consensus pattern (55 bp):
TTTGTGGAAAAATATGAAAGAGTTAGTTTTTGTGGCAAAATATGGAAGAATAGCC
Found at i:68196865 original size:27 final size:27
Alignment explanation
Indices: 68196716--68196857 Score: 95
Period size: 27 Copynumber: 5.3 Consensus size: 27
68196706 CATGTCAGGA
* * * *
68196716 AAGACTAGTATTTGTGGAAAAATATGA
1 AAGAGTAGTCTTTGTGGCAAAATATGT
* * ** *
68196743 AAGATTAGTTTTTGTGGTGAAATATGG
1 AAGAGTAGTCTTTGTGGCAAAATATGT
* * * ** * *
68196770 AAGAATAGCCGTTGCCGTAAAATATGA
1 AAGAGTAGTCTTTGTGGCAAAATATGT
* *
68196797 AAGAGTTGTTTTTGTGGCAAAATATGT
1 AAGAGTAGTCTTTGTGGCAAAATATGT
* * *
68196824 AATAGTAGCCTTTGTGGCGAAATATGT
1 AAGAGTAGTCTTTGTGGCAAAATATGT
68196851 AAGAGTA
1 AAGAGTA
68196858 ATGTTTGTCA
Statistics
Matches: 87, Mismatches: 28, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
27 87 1.00
ACGTcount: A:0.36, C:0.06, G:0.25, T:0.32
Consensus pattern (27 bp):
AAGAGTAGTCTTTGTGGCAAAATATGT
Found at i:68201988 original size:19 final size:18
Alignment explanation
Indices: 68201953--68202001 Score: 62
Period size: 19 Copynumber: 2.6 Consensus size: 18
68201943 AGATGACAAG
*
68201953 GATGAAAAATGAATATGA
1 GATGAGAAATGAATATGA
68201971 GATGAGAAATGAAATATGA
1 GATGAGAAATG-AATATGA
*
68201990 AATGATGAAATG
1 GATGA-GAAATG
68202002 GGATATGAAT
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
18 10 0.37
19 11 0.41
20 6 0.22
ACGTcount: A:0.53, C:0.00, G:0.24, T:0.22
Consensus pattern (18 bp):
GATGAGAAATGAATATGA
Found at i:68201997 original size:27 final size:27
Alignment explanation
Indices: 68201954--68202021 Score: 70
Period size: 27 Copynumber: 2.6 Consensus size: 27
68201944 GATGACAAGG
* *
68201954 ATGAAAAATG-AAT-ATGAGATGAGAA
1 ATGAAATATGAAATGATGAAATGAGAA
* *
68201979 ATGAAATATGAAATGATGAAATGGGAT
1 ATGAAATATGAAATGATGAAATGAGAA
68202006 ATG-AATATTGAAATGA
1 ATGAAATA-TGAAATGA
68202022 ATTCATGTAT
Statistics
Matches: 36, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
25 9 0.25
26 7 0.19
27 20 0.56
ACGTcount: A:0.51, C:0.00, G:0.24, T:0.25
Consensus pattern (27 bp):
ATGAAATATGAAATGATGAAATGAGAA
Found at i:68212818 original size:6 final size:7
Alignment explanation
Indices: 68212790--68212817 Score: 56
Period size: 7 Copynumber: 4.0 Consensus size: 7
68212780 AATAAATATA
68212790 TATTTTT
1 TATTTTT
68212797 TATTTTT
1 TATTTTT
68212804 TATTTTT
1 TATTTTT
68212811 TATTTTT
1 TATTTTT
68212818 AAAATACTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 21 1.00
ACGTcount: A:0.14, C:0.00, G:0.00, T:0.86
Consensus pattern (7 bp):
TATTTTT
Found at i:68212869 original size:20 final size:20
Alignment explanation
Indices: 68212826--68212869 Score: 61
Period size: 20 Copynumber: 2.2 Consensus size: 20
68212816 TTAAAATACT
* * *
68212826 TTTAAAATAATTTTTTTATT
1 TTTAAAATAAATTTTTAATG
68212846 TTTAAAATAAATTTTTAATG
1 TTTAAAATAAATTTTTAATG
68212866 TTTA
1 TTTA
68212870 TTTTAAAAAT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.39, C:0.00, G:0.02, T:0.59
Consensus pattern (20 bp):
TTTAAAATAAATTTTTAATG
Found at i:68216694 original size:3 final size:3
Alignment explanation
Indices: 68216688--68216744 Score: 71
Period size: 3 Copynumber: 19.0 Consensus size: 3
68216678 AAAACTAATA
* *
68216688 TAT TAT TAT TAT TAT TAT TAT TAG TAT TAT TAT CTA- TAT TAT TGT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT -TAT TAT TAT TAT
*
68216733 TAT TAT TGT TAT
1 TAT TAT TAT TAT
68216745 ATTTCTATTT
Statistics
Matches: 46, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
2 2 0.04
3 42 0.91
4 2 0.04
ACGTcount: A:0.30, C:0.02, G:0.05, T:0.63
Consensus pattern (3 bp):
TAT
Found at i:68217009 original size:18 final size:18
Alignment explanation
Indices: 68216988--68217022 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
68216978 TATATACTTA
* *
68216988 TTTATATTTTTTATATAT
1 TTTATAATTTATATATAT
68217006 TTTATAATTTATATATA
1 TTTATAATTTATATATA
68217023 CATATATTTA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (18 bp):
TTTATAATTTATATATAT
Found at i:68217058 original size:43 final size:42
Alignment explanation
Indices: 68216956--68217050 Score: 104
Period size: 42 Copynumber: 2.3 Consensus size: 42
68216946 ACATATATAC
* * * *
68216956 ATACATATCTT-TGATTTATATATATATACTTATTTATATTTT
1 ATACATATTTTATAATTTATATATACATAC-TATTTATATTAT
* *
68216998 TTATATATTTTATAATTTATATATACATA-TATTTATATCTAT
1 ATACATATTTTATAATTTATATATACATACTATTTATAT-TAT
68217040 ATACATATTTT
1 ATACATATTTT
68217051 CTAAATTTTT
Statistics
Matches: 43, Mismatches: 8, Indels: 4
0.78 0.15 0.07
Matches are distributed among these distances:
41 9 0.21
42 19 0.44
43 15 0.35
ACGTcount: A:0.36, C:0.06, G:0.01, T:0.57
Consensus pattern (42 bp):
ATACATATTTTATAATTTATATATACATACTATTTATATTAT
Found at i:68223122 original size:25 final size:26
Alignment explanation
Indices: 68223094--68223151 Score: 82
Period size: 26 Copynumber: 2.3 Consensus size: 26
68223084 TACATACGCA
68223094 TATTTTTTTTAAAATAT-TATGTAAT
1 TATTTTTTTTAAAATATATATGTAAT
***
68223119 TATTTTTTTTATTTTATATATGTAAT
1 TATTTTTTTTAAAATATATATGTAAT
68223145 TATTTTT
1 TATTTTT
68223152 CATAATCTAT
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
25 14 0.48
26 15 0.52
ACGTcount: A:0.29, C:0.00, G:0.03, T:0.67
Consensus pattern (26 bp):
TATTTTTTTTAAAATATATATGTAAT
Found at i:68223162 original size:26 final size:26
Alignment explanation
Indices: 68223111--68223162 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
68223101 TTTAAAATAT
** * *
68223111 TATGTAATTATTTTTTTTATTTTATA
1 TATGTAATTATTTTTCATAATCTATA
68223137 TATGTAATTATTTTTCATAATCTATA
1 TATGTAATTATTTTTCATAATCTATA
68223163 CGTATATATT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.31, C:0.04, G:0.04, T:0.62
Consensus pattern (26 bp):
TATGTAATTATTTTTCATAATCTATA
Found at i:68223184 original size:14 final size:14
Alignment explanation
Indices: 68223165--68223228 Score: 51
Period size: 14 Copynumber: 4.5 Consensus size: 14
68223155 AATCTATACG
68223165 TATATATTTATTTT
1 TATATATTTATTTT
* * *
68223179 TATATATGTATGTA
1 TATATATTTATTTT
68223193 TATATATTGATATTTT
1 TATATATT--TATTTT
*
68223209 TA-ATCAATT-TTTT
1 TATAT-ATTTATTTT
68223222 TATATAT
1 TATATAT
68223229 ATGTATATGC
Statistics
Matches: 38, Mismatches: 8, Indels: 9
0.69 0.15 0.16
Matches are distributed among these distances:
13 7 0.18
14 21 0.55
15 2 0.05
16 8 0.21
ACGTcount: A:0.33, C:0.02, G:0.05, T:0.61
Consensus pattern (14 bp):
TATATATTTATTTT
Found at i:68232116 original size:17 final size:17
Alignment explanation
Indices: 68232088--68232136 Score: 71
Period size: 17 Copynumber: 2.9 Consensus size: 17
68232078 CTAATTCCTT
*
68232088 TACATCACTTAGGTATA
1 TACATTACTTAGGTATA
*
68232105 TATATTACTTAGGTATA
1 TACATTACTTAGGTATA
*
68232122 TACATTATTTAGGTA
1 TACATTACTTAGGTA
68232137 CATGCCACGT
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 28 1.00
ACGTcount: A:0.35, C:0.10, G:0.12, T:0.43
Consensus pattern (17 bp):
TACATTACTTAGGTATA
Found at i:68233236 original size:6 final size:6
Alignment explanation
Indices: 68233225--68233249 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
68233215 TAACGGAAGT
68233225 AGTAAC AGTAAC AGTAAC AGTAAC A
1 AGTAAC AGTAAC AGTAAC AGTAAC A
68233250 ATATTCAACA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.52, C:0.16, G:0.16, T:0.16
Consensus pattern (6 bp):
AGTAAC
Found at i:68233300 original size:45 final size:45
Alignment explanation
Indices: 68233232--68233336 Score: 147
Period size: 45 Copynumber: 2.3 Consensus size: 45
68233222 AGTAGTAACA
* * *
68233232 GTAACAGTAACAGTAACAATATTCAACACACAAAGTGCTGAATCT
1 GTAACAGTAACAGTAACAATATTCAACACACAAAGCGCCGAATCG
* * *
68233277 GTAACAGTAACGGTAACAGTATTCGACACACAAAGCGCCGAATCG
1 GTAACAGTAACAGTAACAATATTCAACACACAAAGCGCCGAATCG
*
68233322 GAAACAGTAACAGTA
1 GTAACAGTAACAGTA
68233337 GTCGGCACAT
Statistics
Matches: 52, Mismatches: 8, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
45 52 1.00
ACGTcount: A:0.43, C:0.21, G:0.18, T:0.18
Consensus pattern (45 bp):
GTAACAGTAACAGTAACAATATTCAACACACAAAGCGCCGAATCG
Found at i:68234609 original size:23 final size:23
Alignment explanation
Indices: 68234579--68234625 Score: 85
Period size: 23 Copynumber: 2.0 Consensus size: 23
68234569 AATAAGTATG
68234579 TACATATATTAATTACAAATGTA
1 TACATATATTAATTACAAATGTA
*
68234602 TACATATATTAATTACACATGTA
1 TACATATATTAATTACAAATGTA
68234625 T
1 T
68234626 TTATAATTAC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.45, C:0.11, G:0.04, T:0.40
Consensus pattern (23 bp):
TACATATATTAATTACAAATGTA
Done.