Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr09 ID=Chr09-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 70713020
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 1142373 characters in sequence are not A, C, G, or T
File 29 of 226
Found at i:13023318 original size:45 final size:46
Alignment explanation
Indices: 13023183--13023366 Score: 307
Period size: 46 Copynumber: 4.0 Consensus size: 46
13023173 ACATAGCTAT
* * *
13023183 AACTCAGTATGGTTTTCTTCGCGGAAATACCATACCTACTTTTCAC
1 AACTCAGTATGGTTTTCTTCACTGAAACACCATACCTACTTTTCAC
*
13023229 AACTCAGTATGGTTTTCTTCACTGAAACACCAAACCTACTTTTCAC
1 AACTCAGTATGGTTTTCTTCACTGAAACACCATACCTACTTTTCAC
13023275 AACTCAGTATGGTTTTCTTCACTG-AACACCATACCTACTTTTCAC
1 AACTCAGTATGGTTTTCTTCACTGAAACACCATACCTACTTTTCAC
* *
13023320 AACTCAGTATGGTTTTCTTCACTGAAATACCATACCTACGTTTCAC
1 AACTCAGTATGGTTTTCTTCACTGAAACACCATACCTACTTTTCAC
13023366 A
1 A
13023367 CTTTTCCATG
Statistics
Matches: 130, Mismatches: 7, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
45 44 0.34
46 86 0.66
ACGTcount: A:0.28, C:0.27, G:0.10, T:0.34
Consensus pattern (46 bp):
AACTCAGTATGGTTTTCTTCACTGAAACACCATACCTACTTTTCAC
Found at i:13023339 original size:91 final size:92
Alignment explanation
Indices: 13023183--13023366 Score: 307
Period size: 91 Copynumber: 2.0 Consensus size: 92
13023173 ACATAGCTAT
* *
13023183 AACTCAGTATGGTTTTCTTCGCGGAAATACCATACCTACTTTTCACAACTCAGTATGGTTTTCTT
1 AACTCAGTATGGTTTTCTTCACGGAAACACCATACCTACTTTTCACAACTCAGTATGGTTTTCTT
*
13023248 CACTGAAACACCAAACCTACTTTTCAC
66 CACTGAAACACCAAACCTACGTTTCAC
*
13023275 AACTCAGTATGGTTTTCTTCACTG-AACACCATACCTACTTTTCACAACTCAGTATGGTTTTCTT
1 AACTCAGTATGGTTTTCTTCACGGAAACACCATACCTACTTTTCACAACTCAGTATGGTTTTCTT
* *
13023339 CACTGAAATACCATACCTACGTTTCAC
66 CACTGAAACACCAAACCTACGTTTCAC
13023366 A
1 A
13023367 CTTTTCCATG
Statistics
Matches: 86, Mismatches: 6, Indels: 1
0.92 0.06 0.01
Matches are distributed among these distances:
91 64 0.74
92 22 0.26
ACGTcount: A:0.28, C:0.27, G:0.10, T:0.34
Consensus pattern (92 bp):
AACTCAGTATGGTTTTCTTCACGGAAACACCATACCTACTTTTCACAACTCAGTATGGTTTTCTT
CACTGAAACACCAAACCTACGTTTCAC
Found at i:13024625 original size:16 final size:17
Alignment explanation
Indices: 13024579--13024626 Score: 71
Period size: 17 Copynumber: 2.9 Consensus size: 17
13024569 AAATTCTTTT
13024579 TAAATCACAAAATTCAA
1 TAAATCACAAAATTCAA
*
13024596 TAAATCACAAAATTCAC
1 TAAATCACAAAATTCAA
*
13024613 TAATTCA-AAAATTC
1 TAAATCACAAAATTC
13024627 TTATAAATTC
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
16 7 0.24
17 22 0.76
ACGTcount: A:0.54, C:0.19, G:0.00, T:0.27
Consensus pattern (17 bp):
TAAATCACAAAATTCAA
Found at i:13029223 original size:29 final size:29
Alignment explanation
Indices: 13029189--13029246 Score: 98
Period size: 29 Copynumber: 2.0 Consensus size: 29
13029179 CGATATTCCC
* *
13029189 TACTCATCATAGCTATATTATTATTCGAT
1 TACTCACCATAGCTATACTATTATTCGAT
13029218 TACTCACCATAGCTATACTATTATTCGAT
1 TACTCACCATAGCTATACTATTATTCGAT
13029247 AGATGTGCTT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 27 1.00
ACGTcount: A:0.31, C:0.21, G:0.07, T:0.41
Consensus pattern (29 bp):
TACTCACCATAGCTATACTATTATTCGAT
Found at i:13038142 original size:2 final size:2
Alignment explanation
Indices: 13038135--13038165 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
13038125 AAAACAAAGA
13038135 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
13038166 CATACTTCAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:13047217 original size:31 final size:29
Alignment explanation
Indices: 13047182--13047241 Score: 75
Period size: 29 Copynumber: 2.0 Consensus size: 29
13047172 GTGATCACTT
13047182 CGTAACACAATAATAACATAAGTGACTAAAA
1 CGTAACA-AATAA-AACATAAGTGACTAAAA
** *
13047213 CGTAACATTTCAAACATAAGTGACTAAAA
1 CGTAACAAATAAAACATAAGTGACTAAAA
13047242 TATGACCTGA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
29 17 0.65
30 2 0.08
31 7 0.27
ACGTcount: A:0.52, C:0.17, G:0.10, T:0.22
Consensus pattern (29 bp):
CGTAACAAATAAAACATAAGTGACTAAAA
Found at i:13049024 original size:2 final size:2
Alignment explanation
Indices: 13049017--13049065 Score: 89
Period size: 2 Copynumber: 24.5 Consensus size: 2
13049007 TTGAATTCTA
13049017 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
*
13049059 AT GT AT A
1 AT AT AT A
13049066 AAAATATCCT
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
2 45 1.00
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (2 bp):
AT
Found at i:13049323 original size:13 final size:13
Alignment explanation
Indices: 13049305--13049329 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
13049295 GAATTTACTT
13049305 GTGTGAAAATTTC
1 GTGTGAAAATTTC
13049318 GTGTGAAAATTT
1 GTGTGAAAATTT
13049330 TATCGTTTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.04, G:0.24, T:0.40
Consensus pattern (13 bp):
GTGTGAAAATTTC
Found at i:13050508 original size:41 final size:41
Alignment explanation
Indices: 13050398--13050509 Score: 154
Period size: 41 Copynumber: 2.7 Consensus size: 41
13050388 TTTTGTAAGT
* * *
13050398 TCAGGCTTTATGCCTAACAGAATTTATGCCGGTGAATTATA
1 TCAGGCTTTATGCCTAGCAGGATTTGTGCCGGTGAATTATA
*
13050439 TCAGGCTTTATGCCTAGCA-GACTCTGTGCCGGTGAATTATA
1 TCAGGCTTTATGCCTAGCAGGA-TTTGTGCCGGTGAATTATA
* *
13050480 TCAGACTTTATGTCTAGCAGGATTTGTGCC
1 TCAGGCTTTATGCCTAGCAGGATTTGTGCC
13050510 TAGCAGGCTT
Statistics
Matches: 62, Mismatches: 7, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
40 1 0.02
41 59 0.95
42 2 0.03
ACGTcount: A:0.24, C:0.20, G:0.22, T:0.34
Consensus pattern (41 bp):
TCAGGCTTTATGCCTAGCAGGATTTGTGCCGGTGAATTATA
Found at i:13050525 original size:16 final size:16
Alignment explanation
Indices: 13050485--13050525 Score: 55
Period size: 16 Copynumber: 2.6 Consensus size: 16
13050475 TTATATCAGA
*
13050485 CTTTATGTCTAGCAGG
1 CTTTATGCCTAGCAGG
* *
13050501 ATTTGTGCCTAGCAGG
1 CTTTATGCCTAGCAGG
13050517 CTTTATGCC
1 CTTTATGCC
13050526 AGTGTTTTAT
Statistics
Matches: 20, Mismatches: 5, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.17, C:0.22, G:0.24, T:0.37
Consensus pattern (16 bp):
CTTTATGCCTAGCAGG
Found at i:13051192 original size:2 final size:2
Alignment explanation
Indices: 13051185--13051218 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
13051175 GATCTATTTG
13051185 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
13051219 GATGTTTAAG
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:13051398 original size:22 final size:22
Alignment explanation
Indices: 13051373--13051541 Score: 90
Period size: 22 Copynumber: 7.4 Consensus size: 22
13051363 ATTTTGTATG
* *
13051373 TATATGCTGCCCATTTGTTGTA
1 TATATGCTGCCAATTTGGTGTA
**
13051395 TATATGCTGATAAATTTTGGTGTA
1 TATATGCTG-CCAA-TTTGGTGTA
* * * *
13051419 AAAATGCTGCTCAATTTGGTATG
1 TATATGCTGC-CAATTTGGTGTA
*
13051442 TATATGCTGTCC-ATTTGCTGTA
1 TATATGCTG-CCAATTTGGTGTA
**
13051464 TATATGCTGTTAAATTTTGGTGTA
1 TATATGCTG-CCAA-TTTGGTGTA
* ** * *
13051488 -AAAGTGCTGTTAAATTTGGTATG
1 TATA-TGCTG-CCAATTTGGTGTA
* *
13051511 TATATGCTGCCTATTTGCTGTA
1 TATATGCTGCCAATTTGGTGTA
13051533 TATATGCTG
1 TATATGCTG
13051542 TTAAATTTTG
Statistics
Matches: 111, Mismatches: 28, Indels: 16
0.72 0.18 0.10
Matches are distributed among these distances:
22 42 0.38
23 31 0.28
24 38 0.34
ACGTcount: A:0.24, C:0.11, G:0.21, T:0.44
Consensus pattern (22 bp):
TATATGCTGCCAATTTGGTGTA
Found at i:13051398 original size:69 final size:69
Alignment explanation
Indices: 13051316--13051674 Score: 592
Period size: 69 Copynumber: 5.2 Consensus size: 69
13051306 ATTTAAGCCT
* *
13051316 ATTTGATGTATATATGCTGTTAAATTTTGGTGTAAAAGTGCTGTTAAATTTTGTATGTATATGCT
1 ATTTGCTGTATATATGCTGTTAAATTTTGGTGTAAAAGTGCTGTTAAATTTGGTATGTATATGCT
13051381 GCCC
66 GCCC
* * * * *
13051385 ATTTGTTGTATATATGCTGATAAATTTTGGTGTAAAAATGCTGCTCAATTTGGTATGTATATGCT
1 ATTTGCTGTATATATGCTGTTAAATTTTGGTGTAAAAGTGCTGTTAAATTTGGTATGTATATGCT
*
13051450 GTCC
66 GCCC
13051454 ATTTGCTGTATATATGCTGTTAAATTTTGGTGTAAAAGTGCTGTTAAATTTGGTATGTATATGCT
1 ATTTGCTGTATATATGCTGTTAAATTTTGGTGTAAAAGTGCTGTTAAATTTGGTATGTATATGCT
*
13051519 GCCT
66 GCCC
13051523 ATTTGCTGTATATATGCTGTTAAATTTTGGTGTAAAAGTGCTGTTAAATTTGGTATGTATATGCT
1 ATTTGCTGTATATATGCTGTTAAATTTTGGTGTAAAAGTGCTGTTAAATTTGGTATGTATATGCT
*
13051588 GCCT
66 GCCC
* * *
13051592 ATTTACTGTATATATACTGTTAAATTTTGGTGTAAAAGTGCTATTAAATTTGGTATGTATATGCT
1 ATTTGCTGTATATATGCTGTTAAATTTTGGTGTAAAAGTGCTGTTAAATTTGGTATGTATATGCT
13051657 GCCC
66 GCCC
*
13051661 ATTTGTTGTATATA
1 ATTTGCTGTATATA
13051675 AGAGCTGTCC
Statistics
Matches: 270, Mismatches: 20, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
69 270 1.00
ACGTcount: A:0.26, C:0.09, G:0.20, T:0.45
Consensus pattern (69 bp):
ATTTGCTGTATATATGCTGTTAAATTTTGGTGTAAAAGTGCTGTTAAATTTGGTATGTATATGCT
GCCC
Found at i:13051403 original size:45 final size:45
Alignment explanation
Indices: 13051341--13051551 Score: 155
Period size: 45 Copynumber: 4.6 Consensus size: 45
13051331 GCTGTTAAAT
* *
13051341 TTTGGTGTA-AAAGTGCTGTTAAATTTTGTATGTATATGCTGCCCA
1 TTTGGTGTATATA-TGCTGTTAAATTTTGTATGTATATGCTGCCAA
* * * *
13051386 TTTGTTGTATATATGCTGATAAATTTTG-GTGTAAAAATGCTGCTCAA
1 TTTGGTGTATATATGCTGTTAAATTTTGTATGT--ATATGCTGC-CAA
* * ** **
13051433 TTTGGTATGTATATGCTG-TCCATTTGCTGTA--TATATGCTGTTAAA
1 TTTGGTGTATATATGCTGTTAAATTT--TGTATGTATATGCTG-CCAA
* * *
13051478 TTTTGGTGTA-AAAGTGCTGTTAAATTTGGTATGTATATGCTGCCTA
1 -TTTGGTGTATATA-TGCTGTTAAATTTTGTATGTATATGCTGCCAA
*
13051524 TTTGCTGTATATATGCTGTTAAATTTTG
1 TTTGGTGTATATATGCTGTTAAATTTTG
13051552 GTGTAAAAGT
Statistics
Matches: 125, Mismatches: 27, Indels: 28
0.69 0.15 0.16
Matches are distributed among these distances:
44 3 0.02
45 58 0.46
46 30 0.24
47 32 0.26
48 2 0.02
ACGTcount: A:0.25, C:0.09, G:0.21, T:0.45
Consensus pattern (45 bp):
TTTGGTGTATATATGCTGTTAAATTTTGTATGTATATGCTGCCAA
Found at i:13053530 original size:25 final size:26
Alignment explanation
Indices: 13053469--13053550 Score: 71
Period size: 25 Copynumber: 3.3 Consensus size: 26
13053459 ACTTTAACGC
* ** *
13053469 GCTCTCTAATTATTATTACATC-AGT
1 GCTCTCTAATTACTAGCACGTCTAGT
* * * *
13053494 GCTCTTTGATTATTAGCATGT-TAGT
1 GCTCTCTAATTACTAGCACGTCTAGT
13053519 GCTCTCTAATTACTAGCACGTCT-GT
1 GCTCTCTAATTACTAGCACGTCTAGT
13053544 GCTCTCT
1 GCTCTCT
13053551 GTATAGCACT
Statistics
Matches: 45, Mismatches: 10, Indels: 4
0.76 0.17 0.07
Matches are distributed among these distances:
25 44 0.98
26 1 0.02
ACGTcount: A:0.21, C:0.22, G:0.15, T:0.43
Consensus pattern (26 bp):
GCTCTCTAATTACTAGCACGTCTAGT
Found at i:13053567 original size:22 final size:22
Alignment explanation
Indices: 13053532--13053574 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
13053522 CTCTAATTAC
*
13053532 TAGCACGTCTGTGCTCTCTGTA
1 TAGCACGTCAGTGCTCTCTGTA
*
13053554 TAGCACTTCAGTGCTCTCTGT
1 TAGCACGTCAGTGCTCTCTGT
13053575 TCATTAGTGC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.14, C:0.28, G:0.21, T:0.37
Consensus pattern (22 bp):
TAGCACGTCAGTGCTCTCTGTA
Found at i:13054352 original size:57 final size:58
Alignment explanation
Indices: 13054264--13054375 Score: 145
Period size: 57 Copynumber: 1.9 Consensus size: 58
13054254 TGGATCGTCA
** * **
13054264 ACAAATATTAAAGCCATCATTGTCAGGCAA-CCGAGATGGTAGAATAAAATAGTTTGG
1 ACAAATACCAAAGCCATCATTGCCAGGCAACCCGAGATGACAGAATAAAATAGTTTGG
** *
13054321 ACAAATACCAAAGCCATTGTTGCCAGGCAACCCGGGATGACAGAATAAAATAGTT
1 ACAAATACCAAAGCCATCATTGCCAGGCAACCCGAGATGACAGAATAAAATAGTT
13054376 CAAATTCCTA
Statistics
Matches: 46, Mismatches: 8, Indels: 1
0.84 0.15 0.02
Matches are distributed among these distances:
57 25 0.54
58 21 0.46
ACGTcount: A:0.40, C:0.18, G:0.21, T:0.21
Consensus pattern (58 bp):
ACAAATACCAAAGCCATCATTGCCAGGCAACCCGAGATGACAGAATAAAATAGTTTGG
Found at i:13064084 original size:326 final size:326
Alignment explanation
Indices: 13063491--13064148 Score: 1127
Period size: 326 Copynumber: 2.0 Consensus size: 326
13063481 ATGTAGTAGT
* *
13063491 CATACCCAATCATTTTAACAACCCATTATTGTTGGGATAGGGTGATAGCTTGCCGATTCGCTAAG
1 CATACCCAATCATTTTAACAACCCATTATTGTTGGAATAGGGTGATAGCTTGCCGATTCGCTAAA
* *
13063556 AACTTCAGGCTTTGGTGATCGGTCCTGATTTGAAACCTCTTCCCAACCAAGTACGTGTGCCATTT
66 AACTTCAGGCTTTGGCGATCGATCCTGATTTGAAACCTCTTCCCAACCAAGTACGTGTGCCATTT
* * * *
13063621 CTTGACTGCTATGAGAACCGTGAACATTTCTTTATTGTAGATGGAAAGTGCCTCATGTTTCACTC
131 CTTGACTACCATGAGAACCGTGAACATTTCCTTATCGTAGATGGAAAGTGCCTCATGTTTCACTC
* *
13063686 TTAGCCCTTTGCTGAAAAATGCCACGGGTCTTCTTTTCTGGTGTAACACAACCCCGACCCCTTGA
196 CTAGCCCTTTGCTGAAAAATGCCACGGGTCTTCCTTTCTGGTGTAACACAACCCCGACCCCTTGA
* **
13063751 CCACATGCATCAGTGTCGATGCAAAACTTTTCATTAAAATTGAGAAGACATAGTATTGGTGCTTG
261 CCACATGCATCAGTGTCGATGCAAAACTCTTCATTAAAATTGAGAAGACATAGTACCGGTGCTTG
13063816 G
326 G
* *
13063817 CATACCCAATCATTTTAACAACCTATTATTGTTGGAATGGGGTGATAGCTTGCCGATTCGCTAAA
1 CATACCCAATCATTTTAACAACCCATTATTGTTGGAATAGGGTGATAGCTTGCCGATTCGCTAAA
13063882 AACTTCAGGCTTTGGCGATCGATCCTGATTTGAAACCTCTTCCCAACCAAGTACGTGTGCCATTT
66 AACTTCAGGCTTTGGCGATCGATCCTGATTTGAAACCTCTTCCCAACCAAGTACGTGTGCCATTT
* * *
13063947 CTTGACTACCATGAGAACTGTGAACATTTCCTTATCGTATATGTAAAGTGCCTCATGTTTCACTC
131 CTTGACTACCATGAGAACCGTGAACATTTCCTTATCGTAGATGGAAAGTGCCTCATGTTTCACTC
*
13064012 CTAGCCCTTTGCTGAAAAATGCCACGGGTCTTCCTTTCTGGTTTAACACAACCCCGACCCCTTGA
196 CTAGCCCTTTGCTGAAAAATGCCACGGGTCTTCCTTTCTGGTGTAACACAACCCCGACCCCTTGA
* *
13064077 CCACATGCGTCAGTGTCGATGCAAAACTCTTCATTAAAATTGGGAAGACATAGTACCGGTGCTTG
261 CCACATGCATCAGTGTCGATGCAAAACTCTTCATTAAAATTGAGAAGACATAGTACCGGTGCTTG
13064142 G
326 G
13064143 CATACC
1 CATACC
13064149 GCTTGCTTTA
Statistics
Matches: 311, Mismatches: 21, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
326 311 1.00
ACGTcount: A:0.26, C:0.24, G:0.19, T:0.31
Consensus pattern (326 bp):
CATACCCAATCATTTTAACAACCCATTATTGTTGGAATAGGGTGATAGCTTGCCGATTCGCTAAA
AACTTCAGGCTTTGGCGATCGATCCTGATTTGAAACCTCTTCCCAACCAAGTACGTGTGCCATTT
CTTGACTACCATGAGAACCGTGAACATTTCCTTATCGTAGATGGAAAGTGCCTCATGTTTCACTC
CTAGCCCTTTGCTGAAAAATGCCACGGGTCTTCCTTTCTGGTGTAACACAACCCCGACCCCTTGA
CCACATGCATCAGTGTCGATGCAAAACTCTTCATTAAAATTGAGAAGACATAGTACCGGTGCTTG
G
Found at i:13064877 original size:84 final size:84
Alignment explanation
Indices: 13064736--13065000 Score: 458
Period size: 84 Copynumber: 3.2 Consensus size: 84
13064726 GAGAAAAAGA
* *
13064736 GAGCTTTTCCCAGGTCATCCAACAATTTTTCTATGATAGGTATGGGGAACCTATCTGTAACACCC
1 GAGCTTGTCCCAGGTCATCCAACAATTCTTCTATGATAGGTATGGGGAACCTATCTGTAACACCC
* *
13064801 CTATCTTGTATTCGTCACG
66 CTATCTCGTATTCGTCACC
* *
13064820 GAGCTTGTCCCAGGTCATCCAACAATTCTTCTATGATAGGTATGGGGAATCTATCTGTAATACCC
1 GAGCTTGTCCCAGGTCATCCAACAATTCTTCTATGATAGGTATGGGGAACCTATCTGTAACACCC
13064885 CTATCTCGTATTCGTCACC
66 CTATCTCGTATTCGTCACC
*
13064904 GAGCTTGTCCCAGGTCATCCAACAATTCTTCTATGATAGGTATGGGGAACCTATCTGTAACACTC
1 GAGCTTGTCCCAGGTCATCCAACAATTCTTCTATGATAGGTATGGGGAACCTATCTGTAACACCC
*
13064969 TTATCTCGTATTCGTCACC
66 CTATCTCGTATTCGTCACC
13064988 GAGCTTGTCCCAG
1 GAGCTTGTCCCAG
13065001 AGCACTACCG
Statistics
Matches: 171, Mismatches: 10, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
84 171 1.00
ACGTcount: A:0.23, C:0.26, G:0.18, T:0.32
Consensus pattern (84 bp):
GAGCTTGTCCCAGGTCATCCAACAATTCTTCTATGATAGGTATGGGGAACCTATCTGTAACACCC
CTATCTCGTATTCGTCACC
Found at i:13065747 original size:17 final size:17
Alignment explanation
Indices: 13065725--13065785 Score: 59
Period size: 17 Copynumber: 3.4 Consensus size: 17
13065715 ATTGAATCAC
13065725 TACATAATTAAAAACAT
1 TACATAATTAAAAACAT
** * *
13065742 TACATAAGTCTTTGAATCAC
1 TACATAA---TTAAAAACAT
13065762 TACATAATTAAAAACAT
1 TACATAATTAAAAACAT
13065779 TACATAA
1 TACATAA
13065786 GTCTTGAAAT
Statistics
Matches: 33, Mismatches: 8, Indels: 6
0.70 0.17 0.13
Matches are distributed among these distances:
17 20 0.61
20 13 0.39
ACGTcount: A:0.51, C:0.15, G:0.03, T:0.31
Consensus pattern (17 bp):
TACATAATTAAAAACAT
Found at i:13065762 original size:37 final size:36
Alignment explanation
Indices: 13065716--13065811 Score: 149
Period size: 37 Copynumber: 2.6 Consensus size: 36
13065706 ATTACCCGAA
13065716 TTGAATCACTACATAATTAAAAACATTACATAAGTC
1 TTGAATCACTACATAATTAAAAACATTACATAAGTC
13065752 TTTGAATCACTACATAATTAAAAACATTACATAAGTC
1 -TTGAATCACTACATAATTAAAAACATTACATAAGTC
*
13065789 TTGAAATTAAC-ACATAATTAAAA
1 TTG-AA-TCACTACATAATTAAAA
13065812 TGTAAGTATT
Statistics
Matches: 56, Mismatches: 1, Indels: 4
0.92 0.02 0.07
Matches are distributed among these distances:
36 3 0.05
37 50 0.89
38 3 0.05
ACGTcount: A:0.49, C:0.15, G:0.05, T:0.31
Consensus pattern (36 bp):
TTGAATCACTACATAATTAAAAACATTACATAAGTC
Found at i:13065969 original size:38 final size:39
Alignment explanation
Indices: 13065925--13066020 Score: 176
Period size: 39 Copynumber: 2.5 Consensus size: 39
13065915 CTTAGAGTTT
*
13065925 GACTTTAGTTTTATTTTTATTGGGTT-GGTAATTGGGTA
1 GACTTTAGTTTTAGTTTTATTGGGTTGGGTAATTGGGTA
13065963 GACTTTAGTTTTAGTTTTATTGGGTTGGGTAATTGGGTA
1 GACTTTAGTTTTAGTTTTATTGGGTTGGGTAATTGGGTA
13066002 GACTTTAGTTTTAGTTTTA
1 GACTTTAGTTTTAGTTTTA
13066021 GTTTTAGTTT
Statistics
Matches: 56, Mismatches: 1, Indels: 1
0.97 0.02 0.02
Matches are distributed among these distances:
38 25 0.45
39 31 0.55
ACGTcount: A:0.19, C:0.03, G:0.26, T:0.52
Consensus pattern (39 bp):
GACTTTAGTTTTAGTTTTATTGGGTTGGGTAATTGGGTA
Found at i:13066011 original size:33 final size:33
Alignment explanation
Indices: 13065933--13066014 Score: 94
Period size: 38 Copynumber: 2.3 Consensus size: 33
13065923 TTGACTTTAG
*
13065933 TTTTATTTTTATTGGGTTGGTAATTGGGTAGAC
1 TTTTAGTTTTATTGGGTTGGTAATTGGGTAGAC
13065966 TTTAGTTTTAGTTTTATTGGGTTGGGTAATTGGGTAGAC
1 -----TTTTAGTTTTATTGGGTT-GGTAATTGGGTAGAC
13066005 -TTTAGTTTTA
1 TTTTAGTTTTA
13066015 GTTTTAGTTT
Statistics
Matches: 42, Mismatches: 1, Indels: 7
0.84 0.02 0.14
Matches are distributed among these distances:
33 10 0.24
38 17 0.40
39 15 0.36
ACGTcount: A:0.18, C:0.02, G:0.27, T:0.52
Consensus pattern (33 bp):
TTTTAGTTTTATTGGGTTGGTAATTGGGTAGAC
Found at i:13066016 original size:6 final size:6
Alignment explanation
Indices: 13066005--13066032 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
13065995 TTGGGTAGAC
13066005 TTTAGT TTTAGT TTTAGT TTTAGT TTTA
1 TTTAGT TTTAGT TTTAGT TTTAGT TTTA
13066033 TTGGGTTGGG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.18, C:0.00, G:0.14, T:0.68
Consensus pattern (6 bp):
TTTAGT
Found at i:13066043 original size:5 final size:5
Alignment explanation
Indices: 13066033--13066074 Score: 57
Period size: 5 Copynumber: 7.8 Consensus size: 5
13066023 TTTAGTTTTA
13066033 TTGGG TTGGG TAATTGGG TTGGG TTGGG TTGGG TTGGG TTGG
1 TTGGG TTGGG T---TGGG TTGGG TTGGG TTGGG TTGGG TTGG
13066075 ATAATTTTAT
Statistics
Matches: 34, Mismatches: 0, Indels: 6
0.85 0.00 0.15
Matches are distributed among these distances:
5 29 0.85
8 5 0.15
ACGTcount: A:0.05, C:0.00, G:0.55, T:0.40
Consensus pattern (5 bp):
TTGGG
Found at i:13066050 original size:13 final size:13
Alignment explanation
Indices: 13066032--13066056 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
13066022 TTTTAGTTTT
13066032 ATTGGGTTGGGTA
1 ATTGGGTTGGGTA
13066045 ATTGGGTTGGGT
1 ATTGGGTTGGGT
13066057 TGGGTTGGGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.12, C:0.00, G:0.48, T:0.40
Consensus pattern (13 bp):
ATTGGGTTGGGTA
Found at i:13068663 original size:37 final size:37
Alignment explanation
Indices: 13068477--13068661 Score: 298
Period size: 37 Copynumber: 5.0 Consensus size: 37
13068467 AGCTGAAGCT
* *
13068477 ACCACTTATCACTTTATCACTTGATCAGATAAGTGTA
1 ACCACTTATCACTTTGTCTCTTGATCAGATAAGTGTA
*
13068514 TCCACTTATCACTTTGTCTCTTGATCAGATAAGTGTA
1 ACCACTTATCACTTTGTCTCTTGATCAGATAAGTGTA
* *
13068551 ACCACTTATCACTTTGTTTCTTGATTAGATAAGTGTA
1 ACCACTTATCACTTTGTCTCTTGATCAGATAAGTGTA
*
13068588 ACCACTTATCACTTTGTTTCTTGATCAGATAAGTGTA
1 ACCACTTATCACTTTGTCTCTTGATCAGATAAGTGTA
* *
13068625 GCCACTTATCACTTTGTCACTTGATCAGATAAGTGTA
1 ACCACTTATCACTTTGTCTCTTGATCAGATAAGTGTA
13068662 GCTAAAACTA
Statistics
Matches: 138, Mismatches: 10, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 138 1.00
ACGTcount: A:0.28, C:0.20, G:0.14, T:0.39
Consensus pattern (37 bp):
ACCACTTATCACTTTGTCTCTTGATCAGATAAGTGTA
Found at i:13073079 original size:51 final size:51
Alignment explanation
Indices: 13073006--13073107 Score: 177
Period size: 51 Copynumber: 2.0 Consensus size: 51
13072996 ATCACATTTA
13073006 TCACTTGTCACTGATCAAATAAGTGTAGCTAAAGCTACGACTTATCACTTG
1 TCACTTGTCACTGATCAAATAAGTGTAGCTAAAGCTACGACTTATCACTTG
* * *
13073057 TCACTTGTCACTGATCAGATAAGTGTAGCTGAAGCTACTACTTATCACTTG
1 TCACTTGTCACTGATCAAATAAGTGTAGCTAAAGCTACGACTTATCACTTG
13073108 CTACTGATCA
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
51 48 1.00
ACGTcount: A:0.29, C:0.22, G:0.17, T:0.32
Consensus pattern (51 bp):
TCACTTGTCACTGATCAAATAAGTGTAGCTAAAGCTACGACTTATCACTTG
Found at i:13075495 original size:21 final size:21
Alignment explanation
Indices: 13075435--13075496 Score: 79
Period size: 21 Copynumber: 3.0 Consensus size: 21
13075425 GAGTTCTTGT
* * *
13075435 TGCATCACCCCCATATCATTC
1 TGCATGACTCCCATATCTTTC
* *
13075456 TGCATGACTCCCGTGTCTTTC
1 TGCATGACTCCCATATCTTTC
13075477 TGCATGACTCCCATATCTTT
1 TGCATGACTCCCATATCTTT
13075497 TTGTAATCTC
Statistics
Matches: 34, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 34 1.00
ACGTcount: A:0.18, C:0.35, G:0.11, T:0.35
Consensus pattern (21 bp):
TGCATGACTCCCATATCTTTC
Found at i:13082317 original size:42 final size:42
Alignment explanation
Indices: 13082252--13082373 Score: 147
Period size: 42 Copynumber: 2.9 Consensus size: 42
13082242 TTAACTCATA
* * * *
13082252 TGAGTTTCCGTTTCACCCTAATGGGTTTCTGTTCAGCTCTTT
1 TGAGCTTCAGTTTAACCTTAATGGGTTTCTGTTCAGCTCTTT
**
13082294 TGAGCTTCAGTTTAACCTTAATGGGTTTCCATTCAGCTCTTT
1 TGAGCTTCAGTTTAACCTTAATGGGTTTCTGTTCAGCTCTTT
* * *
13082336 TGAGCTTCAATTTAACTTTTATGGGTTT-TCGTTCAGCT
1 TGAGCTTCAGTTTAACCTTAATGGGTTTCT-GTTCAGCT
13082374 TTTACGAGCT
Statistics
Matches: 68, Mismatches: 11, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
42 68 1.00
ACGTcount: A:0.16, C:0.20, G:0.18, T:0.45
Consensus pattern (42 bp):
TGAGCTTCAGTTTAACCTTAATGGGTTTCTGTTCAGCTCTTT
Found at i:13082377 original size:21 final size:21
Alignment explanation
Indices: 13082365--13082412 Score: 96
Period size: 21 Copynumber: 2.3 Consensus size: 21
13082355 TATGGGTTTT
13082365 CGTTCAGCTTTTACGAGCTTC
1 CGTTCAGCTTTTACGAGCTTC
13082386 CGTTCAGCTTTTACGAGCTTC
1 CGTTCAGCTTTTACGAGCTTC
13082407 CGTTCA
1 CGTTCA
13082413 ACCCTTATAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.15, C:0.29, G:0.19, T:0.38
Consensus pattern (21 bp):
CGTTCAGCTTTTACGAGCTTC
Found at i:13083472 original size:17 final size:17
Alignment explanation
Indices: 13083450--13083512 Score: 54
Period size: 17 Copynumber: 3.5 Consensus size: 17
13083440 ATTAAATCAC
13083450 TACATAATTAAAAACAT
1 TACATAATTAAAAACAT
** * *
13083467 TACATAAGTCTTTGAATCAC
1 TACATAA---TTAAAAACAT
*
13083487 TACATAATTAAAAATAT
1 TACATAATTAAAAACAT
13083504 TACATAATT
1 TACATAATT
13083513 CTTGAAATTA
Statistics
Matches: 34, Mismatches: 9, Indels: 6
0.69 0.18 0.12
Matches are distributed among these distances:
17 21 0.62
20 13 0.38
ACGTcount: A:0.49, C:0.13, G:0.03, T:0.35
Consensus pattern (17 bp):
TACATAATTAAAAACAT
Found at i:13083490 original size:37 final size:37
Alignment explanation
Indices: 13083444--13083515 Score: 126
Period size: 37 Copynumber: 1.9 Consensus size: 37
13083434 ACCAGAATTA
13083444 AATCACTACATAATTAAAAACATTACATAAGTCTTTG
1 AATCACTACATAATTAAAAACATTACATAAGTCTTTG
* *
13083481 AATCACTACATAATTAAAAATATTACATAATTCTT
1 AATCACTACATAATTAAAAACATTACATAAGTCTT
13083516 GAAATTAACA
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 33 1.00
ACGTcount: A:0.47, C:0.15, G:0.03, T:0.35
Consensus pattern (37 bp):
AATCACTACATAATTAAAAACATTACATAAGTCTTTG
Found at i:13083696 original size:38 final size:39
Alignment explanation
Indices: 13083645--13083741 Score: 151
Period size: 39 Copynumber: 2.5 Consensus size: 39
13083635 ACTTAGAATT
* *
13083645 AGACTTTAGTTTTATTTTTATCGGGTT-GGTAATTGGGC
1 AGACTTTAGTTTTAGTTTTATCGGGTTGGGTAATTGGAC
* *
13083683 AGACTTTAGTTTTAGTTTTATTGGGTTGGGTAATTGGAT
1 AGACTTTAGTTTTAGTTTTATCGGGTTGGGTAATTGGAC
13083722 AGACTTTAGTTTTAGTTTTA
1 AGACTTTAGTTTTAGTTTTA
13083742 GTTTTAGTTT
Statistics
Matches: 54, Mismatches: 4, Indels: 1
0.92 0.07 0.02
Matches are distributed among these distances:
38 25 0.46
39 29 0.54
ACGTcount: A:0.21, C:0.05, G:0.25, T:0.49
Consensus pattern (39 bp):
AGACTTTAGTTTTAGTTTTATCGGGTTGGGTAATTGGAC
Found at i:13083737 original size:6 final size:6
Alignment explanation
Indices: 13083726--13083759 Score: 68
Period size: 6 Copynumber: 5.7 Consensus size: 6
13083716 TTGGATAGAC
13083726 TTTAGT TTTAGT TTTAGT TTTAGT TTTAGT TTTA
1 TTTAGT TTTAGT TTTAGT TTTAGT TTTAGT TTTA
13083760 TTGGGTTGGG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 28 1.00
ACGTcount: A:0.18, C:0.00, G:0.15, T:0.68
Consensus pattern (6 bp):
TTTAGT
Found at i:13083777 original size:13 final size:13
Alignment explanation
Indices: 13083759--13083783 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
13083749 TTTTAGTTTT
13083759 ATTGGGTTGGGTA
1 ATTGGGTTGGGTA
13083772 ATTGGGTTGGGT
1 ATTGGGTTGGGT
13083784 TGGATAATTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.12, C:0.00, G:0.48, T:0.40
Consensus pattern (13 bp):
ATTGGGTTGGGTA
Found at i:13084858 original size:21 final size:21
Alignment explanation
Indices: 13084828--13084884 Score: 78
Period size: 21 Copynumber: 2.7 Consensus size: 21
13084818 GCTTCAGATT
13084828 AACCCTTATGGGTTTCCATTC
1 AACCCTTATGGGTTTCCATTC
* * *
13084849 AGCTCTTATGAGTTTCCATTC
1 AACCCTTATGGGTTTCCATTC
*
13084870 AACCCTTACGGGTTT
1 AACCCTTATGGGTTT
13084885 TCGTTTAGCA
Statistics
Matches: 29, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.19, C:0.26, G:0.16, T:0.39
Consensus pattern (21 bp):
AACCCTTATGGGTTTCCATTC
Found at i:13101052 original size:176 final size:175
Alignment explanation
Indices: 13100750--13101102 Score: 476
Period size: 176 Copynumber: 2.0 Consensus size: 175
13100740 ATCTTCCCCC
* * * * * *
13100750 TACCATCTCCCCTCTTCTCTCCCTCGTCTCTGCAAATCAGTTTTTTTTTTCTTTTCATCTCAGTT
1 TACCATCGCCCCTCTTCTCTCCCTCGTATCTACAAATCAGTTTTTATTCTCTTCTCATCTCAGTT
* * * *
13100815 CTCGCCCACCGCCGTGTCCGCTGATTTTTTCCTGATCTGACCCGTATTCCGTGTTGGATCGTGTT
66 CTCGCCCACCGCC--GTCCGCTGATTTTTTCCGGATCTGACCCGTATCCCGTGTCGGATCGTGTC
* *
13100880 GACACAGGTACTGCACCCCAAACTG-CCGAGTCAGGGTAACGAAGCT
129 GACACAAGTACTGCACCCCAAACTGCCCGAGCCAGGGTAACGAAGCT
**
13100926 TACCATCGCCCCTCTTCTCTTTCTCGTATCTACAAATCAGGTTTCTTCATTCTCTTCTCATCTCA
1 TACCATCGCCCCTCTTCTCTCCCTCGTATCTACAAATCA-GTTT-TT-ATTCTCTTCTCATCTCA
*
13100991 GTTCTCGCCCACCGCC-TCCGCTGTTTTTTTCCGGATCTGACCCGTATCCCGTGTCGGATCGTGT
63 GTTCTCGCCCACCGCCGTCCGCTGATTTTTTCCGGATCTGACCCGTATCCCGTGTCGGATCGTGT
* * *
13101055 CGACACAAGTACTGCATCCCAAATTGCTCCGAGCCCGGGTAACGAAGC
128 CGACACAAGTACTGCACCCCAAACTGC-CCGAGCCAGGGTAACGAAGC
13101103 CTATAATTAT
Statistics
Matches: 154, Mismatches: 18, Indels: 8
0.86 0.10 0.04
Matches are distributed among these distances:
176 100 0.65
177 4 0.03
178 20 0.13
179 30 0.19
ACGTcount: A:0.16, C:0.34, G:0.17, T:0.33
Consensus pattern (175 bp):
TACCATCGCCCCTCTTCTCTCCCTCGTATCTACAAATCAGTTTTTATTCTCTTCTCATCTCAGTT
CTCGCCCACCGCCGTCCGCTGATTTTTTCCGGATCTGACCCGTATCCCGTGTCGGATCGTGTCGA
CACAAGTACTGCACCCCAAACTGCCCGAGCCAGGGTAACGAAGCT
Found at i:13105814 original size:11 final size:11
Alignment explanation
Indices: 13105798--13105835 Score: 76
Period size: 11 Copynumber: 3.5 Consensus size: 11
13105788 AAATAAAAAA
13105798 TAAAAATATTT
1 TAAAAATATTT
13105809 TAAAAATATTT
1 TAAAAATATTT
13105820 TAAAAATATTT
1 TAAAAATATTT
13105831 TAAAA
1 TAAAA
13105836 TTAAAAAATA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 27 1.00
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (11 bp):
TAAAAATATTT
Found at i:13106289 original size:3 final size:3
Alignment explanation
Indices: 13106283--13106310 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
13106273 CGTCTATTTC
13106283 TCT TCT TCT TCT TCT TCT TCT TCT TCT T
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT T
13106311 TTTGGGTAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.00, C:0.32, G:0.00, T:0.68
Consensus pattern (3 bp):
TCT
Found at i:13122520 original size:9 final size:9
Alignment explanation
Indices: 13122506--13122533 Score: 56
Period size: 9 Copynumber: 3.1 Consensus size: 9
13122496 TGAGTTTTCG
13122506 AATTCGAAT
1 AATTCGAAT
13122515 AATTCGAAT
1 AATTCGAAT
13122524 AATTCGAAT
1 AATTCGAAT
13122533 A
1 A
13122534 TCAAACTATA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.46, C:0.11, G:0.11, T:0.32
Consensus pattern (9 bp):
AATTCGAAT
Found at i:13122747 original size:30 final size:31
Alignment explanation
Indices: 13122713--13122773 Score: 81
Period size: 30 Copynumber: 2.0 Consensus size: 31
13122703 AAACCTTTTA
*
13122713 TTTTCTCCC-AAAATTTTTACTCTC-TCCCAC
1 TTTTC-CCCTAAAACTTTTACTCTCTTCCCAC
*
13122743 TTTTCCCCTAAAACTTTTATTCTCTTCCCAC
1 TTTTCCCCTAAAACTTTTACTCTCTTCCCAC
13122774 CCCACCTCTC
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
29 3 0.11
30 18 0.67
31 6 0.22
ACGTcount: A:0.20, C:0.36, G:0.00, T:0.44
Consensus pattern (31 bp):
TTTTCCCCTAAAACTTTTACTCTCTTCCCAC
Found at i:13122881 original size:17 final size:17
Alignment explanation
Indices: 13122854--13122911 Score: 55
Period size: 17 Copynumber: 3.2 Consensus size: 17
13122844 CTCCCCCCTA
*
13122854 TTTATTTCCCCTCAAACT
1 TTTATTTCCCC-AAAACT
13122872 TTTA-TTCCCCAAAACTT
1 TTTATTTCCCCAAAAC-T
*
13122889 TTTATTTTCCACCTAAACT
1 TTTA-TTTCC-CCAAAACT
13122908 TTTA
1 TTTA
13122912 CTTCTCACCC
Statistics
Matches: 34, Mismatches: 2, Indels: 7
0.79 0.05 0.16
Matches are distributed among these distances:
16 4 0.12
17 11 0.32
18 4 0.12
19 9 0.26
20 6 0.18
ACGTcount: A:0.26, C:0.28, G:0.00, T:0.47
Consensus pattern (17 bp):
TTTATTTCCCCAAAACT
Found at i:13123430 original size:5 final size:5
Alignment explanation
Indices: 13123420--13123445 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
13123410 GAACAAATAT
13123420 ATTCG ATTCG ATTCG ATTCG ATTCG A
1 ATTCG ATTCG ATTCG ATTCG ATTCG A
13123446 ATTCCATCTC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.23, C:0.19, G:0.19, T:0.38
Consensus pattern (5 bp):
ATTCG
Found at i:13123545 original size:5 final size:5
Alignment explanation
Indices: 13123535--13123565 Score: 53
Period size: 5 Copynumber: 6.2 Consensus size: 5
13123525 CTCGAAAATT
*
13123535 TTCGA TTCGA TTCGA TTCAA TTCGA TTCGA T
1 TTCGA TTCGA TTCGA TTCGA TTCGA TTCGA T
13123566 CGAATACTCA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
5 24 1.00
ACGTcount: A:0.23, C:0.19, G:0.16, T:0.42
Consensus pattern (5 bp):
TTCGA
Found at i:13135196 original size:18 final size:18
Alignment explanation
Indices: 13135169--13135204 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
13135159 AATTCTAATA
*
13135169 CCTTTTCCTTTTACAAAC
1 CCTTTACCTTTTACAAAC
13135187 CCTTTACCTTTTACAAAC
1 CCTTTACCTTTTACAAAC
13135205 TCGTATTTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.25, C:0.33, G:0.00, T:0.42
Consensus pattern (18 bp):
CCTTTACCTTTTACAAAC
Found at i:13150150 original size:108 final size:108
Alignment explanation
Indices: 13149961--13150166 Score: 297
Period size: 108 Copynumber: 1.9 Consensus size: 108
13149951 TGGAAATCAT
** *
13149961 GTATTTAAAACACAGAGGTATATTTAAAAATAACATATGATAAATAATGAAATATTTGGTTTGAA
1 GTATTTAAAACACAGAGGTATATTTAAAAATAACATACAATAAATAATAAAATATTTGGTTTGAA
* *
13150026 ACTAATTAATATTAATAACACATGAAATATGTACAATTTTCAC
66 ACTAATTAATAATAATAACACATAAAATATGTACAATTTTCAC
** * * *
13150069 GTATTTAAAACATGGATGTGTATTTAAAAATAACATACAATAAATAATAAAATGTATT-GTTTGA
1 GTATTTAAAACACAGAGGTATATTTAAAAATAACATACAATAAATAATAAAATAT-TTGGTTTGA
*
13150133 AATTAATTAATAATAATAACACATAAAATATGTA
65 AACTAATTAATAATAATAACACATAAAATATGTA
13150167 TAATATTAAA
Statistics
Matches: 86, Mismatches: 11, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
108 84 0.98
109 2 0.02
ACGTcount: A:0.49, C:0.07, G:0.10, T:0.34
Consensus pattern (108 bp):
GTATTTAAAACACAGAGGTATATTTAAAAATAACATACAATAAATAATAAAATATTTGGTTTGAA
ACTAATTAATAATAATAACACATAAAATATGTACAATTTTCAC
Found at i:13153818 original size:33 final size:33
Alignment explanation
Indices: 13153776--13153926 Score: 126
Period size: 33 Copynumber: 4.4 Consensus size: 33
13153766 ACAATGTTTA
* *
13153776 AATG-TAAGACCATAGCTGGGTTATGGCATTTT
1 AATGATAAGACCATAACTGGGTTATGGCATTAT
*
13153808 AATGAAAAGACCATAACTGGGTTATGGCAGTATAGAT
1 AATGATAAGACCATAACTGGGTTATGGCA-T-T--AT
* * * *
13153845 ACATGTGTAAGACCATAGCTGGGCTATGGCATTCT
1 A-ATG-ATAAGACCATAACTGGGTTATGGCATTAT
* * * *
13153880 GATGATAAGACCATAACTGAGTTATGGCACTACA
1 AATGATAAGACCATAACTGGGTTATGGCATTA-T
13153914 AATG-TAAGACCAT
1 AATGATAAGACCAT
13153927 GGCAGGGTCA
Statistics
Matches: 94, Mismatches: 17, Indels: 15
0.75 0.13 0.12
Matches are distributed among these distances:
32 4 0.04
33 53 0.56
34 7 0.07
35 2 0.02
37 3 0.03
38 4 0.04
39 21 0.22
ACGTcount: A:0.34, C:0.15, G:0.23, T:0.27
Consensus pattern (33 bp):
AATGATAAGACCATAACTGGGTTATGGCATTAT
Found at i:13154458 original size:18 final size:18
Alignment explanation
Indices: 13154437--13154497 Score: 52
Period size: 18 Copynumber: 3.3 Consensus size: 18
13154427 TAAAATTTGA
13154437 TAAATCAATGAAATGAGT
1 TAAATCAATGAAATGAGT
* ** *
13154455 TAAAT-AGGTATAAAATTTGA
1 TAAATCA---ATGAAATGAGT
13154475 TAAATCAATGAAATGAGT
1 TAAATCAATGAAATGAGT
13154493 TAAAT
1 TAAAT
13154498 AGGTAGGTAT
Statistics
Matches: 31, Mismatches: 8, Indels: 8
0.66 0.17 0.17
Matches are distributed among these distances:
17 1 0.03
18 17 0.55
20 12 0.39
21 1 0.03
ACGTcount: A:0.51, C:0.03, G:0.15, T:0.31
Consensus pattern (18 bp):
TAAATCAATGAAATGAGT
Found at i:13154469 original size:38 final size:38
Alignment explanation
Indices: 13154427--13154502 Score: 152
Period size: 38 Copynumber: 2.0 Consensus size: 38
13154417 TAATTAGTAG
13154427 TAAAATTTGATAAATCAATGAAATGAGTTAAATAGGTA
1 TAAAATTTGATAAATCAATGAAATGAGTTAAATAGGTA
13154465 TAAAATTTGATAAATCAATGAAATGAGTTAAATAGGTA
1 TAAAATTTGATAAATCAATGAAATGAGTTAAATAGGTA
13154503 GGTATAAGTA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.50, C:0.03, G:0.16, T:0.32
Consensus pattern (38 bp):
TAAAATTTGATAAATCAATGAAATGAGTTAAATAGGTA
Found at i:13155738 original size:22 final size:22
Alignment explanation
Indices: 13155713--13155756 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
13155703 TTGTTTTACC
*
13155713 TATGCATAAAATAAAATAAATA
1 TATGCATAAAATAAAAAAAATA
* *
13155735 TATGTATAAATTAAAAAAAATA
1 TATGCATAAAATAAAAAAAATA
13155757 GATGAGGTGA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.64, C:0.02, G:0.05, T:0.30
Consensus pattern (22 bp):
TATGCATAAAATAAAAAAAATA
Found at i:13162887 original size:17 final size:17
Alignment explanation
Indices: 13162865--13162899 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
13162855 AATAAAAGAA
13162865 TAGGCACAATTAAATAT
1 TAGGCACAATTAAATAT
*
13162882 TAGGCACAATTGAATAT
1 TAGGCACAATTAAATAT
13162899 T
1 T
13162900 TAAAATTCAC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.43, C:0.11, G:0.14, T:0.31
Consensus pattern (17 bp):
TAGGCACAATTAAATAT
Found at i:13163291 original size:40 final size:40
Alignment explanation
Indices: 13163232--13163333 Score: 132
Period size: 40 Copynumber: 2.5 Consensus size: 40
13163222 AACACACTAG
* * * ***
13163232 TTTGGCACCTAGTGCCTCATCGGATAATTTGAAGTAATAA
1 TTTGACACCCAGTGTCTCATCGGATAAACCGAAGTAATAA
* *
13163272 TTTGACATCCAGTGTCTCATCGGCTAAACCGAAGTAATAA
1 TTTGACACCCAGTGTCTCATCGGATAAACCGAAGTAATAA
13163312 TTTGACACCCAGTGTCTCATCG
1 TTTGACACCCAGTGTCTCATCG
13163334 ACTCGAAGTC
Statistics
Matches: 53, Mismatches: 9, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 53 1.00
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (40 bp):
TTTGACACCCAGTGTCTCATCGGATAAACCGAAGTAATAA
Found at i:13166366 original size:18 final size:18
Alignment explanation
Indices: 13166343--13166387 Score: 90
Period size: 18 Copynumber: 2.5 Consensus size: 18
13166333 CCGTATCTTC
13166343 GATTTTGAAACTATTAAA
1 GATTTTGAAACTATTAAA
13166361 GATTTTGAAACTATTAAA
1 GATTTTGAAACTATTAAA
13166379 GATTTTGAA
1 GATTTTGAA
13166388 TGTTTCTATT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 27 1.00
ACGTcount: A:0.42, C:0.04, G:0.13, T:0.40
Consensus pattern (18 bp):
GATTTTGAAACTATTAAA
Found at i:13168059 original size:9 final size:9
Alignment explanation
Indices: 13168045--13168073 Score: 58
Period size: 9 Copynumber: 3.2 Consensus size: 9
13168035 TTTCAAATCA
13168045 CAACCAATT
1 CAACCAATT
13168054 CAACCAATT
1 CAACCAATT
13168063 CAACCAATT
1 CAACCAATT
13168072 CA
1 CA
13168074 TTTCACATTC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.45, C:0.34, G:0.00, T:0.21
Consensus pattern (9 bp):
CAACCAATT
Found at i:13168733 original size:45 final size:45
Alignment explanation
Indices: 13168675--13168827 Score: 227
Period size: 45 Copynumber: 3.4 Consensus size: 45
13168665 CACCAGTATA
* *
13168675 CAGTAATCAGTAACAGTAACAGTATTCAACACACAAAGTGCTGAAC
1 CAGTAA-CAGTAACAGTAACAGTATTCGACACACAAAGTGCTGAAT
* *
13168721 CTGTAACAGTAACAGTAACAGTATTCGACACACAAAGTG-TCGAGT
1 CAGTAACAGTAACAGTAACAGTATTCGACACACAAAGTGCT-GAAT
* *
13168766 CGGTAACAGTAACAGTAACAGTATTCGACACACAAAGTGCCGAAT
1 CAGTAACAGTAACAGTAACAGTATTCGACACACAAAGTGCTGAAT
13168811 CAGTAACAGTAACAGTA
1 CAGTAACAGTAACAGTA
13168828 GTCGGCACAT
Statistics
Matches: 97, Mismatches: 8, Indels: 5
0.88 0.07 0.05
Matches are distributed among these distances:
44 1 0.01
45 91 0.94
46 5 0.05
ACGTcount: A:0.41, C:0.21, G:0.18, T:0.20
Consensus pattern (45 bp):
CAGTAACAGTAACAGTAACAGTATTCGACACACAAAGTGCTGAAT
Found at i:13168851 original size:38 final size:39
Alignment explanation
Indices: 13168679--13168854 Score: 142
Period size: 45 Copynumber: 4.2 Consensus size: 39
13168669 AGTATACAGT
* * *
13168679 AATCAGTAACAGTAACAGTATTCAACACACAAAGTGCTG
1 AATCAGTAACAGTAACAGTAGTCGACACACAAAGTGCCG
*
13168718 AACCTGTAACAGTAACAGTAACAGTATTCGACACACAAAGTGTCGAGTCGG
1 AA----T--CAGTAACAGTAACAGTAGTCGACACACAAAGTG-C----C-G
*
13168769 TAA-CAGTAACAGTAACAGTATTCGACACACAAAGTGCCG
1 -AATCAGTAACAGTAACAGTAGTCGACACACAAAGTGCCG
* *
13168808 AATCAGTAACAGTAACAGTAGTCGGCACA-TAAGTGCCTG
1 AATCAGTAACAGTAACAGTAGTCGACACACAAAGTGCC-G
13168847 -ATCAGTAA
1 AATCAGTAA
13168855 GCCGGCAAAT
Statistics
Matches: 117, Mismatches: 5, Indels: 31
0.76 0.03 0.20
Matches are distributed among these distances:
38 17 0.15
39 28 0.24
40 1 0.01
43 1 0.01
44 1 0.01
45 65 0.56
46 1 0.01
51 1 0.01
52 2 0.02
ACGTcount: A:0.40, C:0.21, G:0.19, T:0.20
Consensus pattern (39 bp):
AATCAGTAACAGTAACAGTAGTCGACACACAAAGTGCCG
Found at i:13171965 original size:10 final size:10
Alignment explanation
Indices: 13171950--13171980 Score: 62
Period size: 10 Copynumber: 3.1 Consensus size: 10
13171940 TAAAGTTTTC
13171950 TGCCGTACCA
1 TGCCGTACCA
13171960 TGCCGTACCA
1 TGCCGTACCA
13171970 TGCCGTACCA
1 TGCCGTACCA
13171980 T
1 T
13171981 TTCTCTTTTC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 21 1.00
ACGTcount: A:0.19, C:0.39, G:0.19, T:0.23
Consensus pattern (10 bp):
TGCCGTACCA
Found at i:13173307 original size:5 final size:5
Alignment explanation
Indices: 13173299--13173353 Score: 53
Period size: 5 Copynumber: 11.2 Consensus size: 5
13173289 TATTTAATTT
* *
13173299 ATATA ATATA ATACA ATATA ATATA TTATATT ATATA ATA-A A-ATA ATAT-
1 ATATA ATATA ATATA ATATA ATATA --ATATA ATATA ATATA ATATA ATATA
13173348 ATATA A
1 ATATA A
13173354 AACATAAAAA
Statistics
Matches: 41, Mismatches: 4, Indels: 10
0.75 0.07 0.18
Matches are distributed among these distances:
3 1 0.02
4 8 0.20
5 28 0.68
7 4 0.10
ACGTcount: A:0.58, C:0.02, G:0.00, T:0.40
Consensus pattern (5 bp):
ATATA
Found at i:13173328 original size:27 final size:25
Alignment explanation
Indices: 13173297--13173349 Score: 79
Period size: 27 Copynumber: 2.0 Consensus size: 25
13173287 TCTATTTAAT
13173297 TTATATAATATAATACAATATAATATA
1 TTATATAATATAATA-AA-ATAATATA
*
13173324 TTATATTATATAATAAAATAATATA
1 TTATATAATATAATAAAATAATATA
13173349 T
1 T
13173350 ATAAAACATA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 9 0.36
26 2 0.08
27 14 0.56
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.43
Consensus pattern (25 bp):
TTATATAATATAATAAAATAATATA
Found at i:13175189 original size:45 final size:44
Alignment explanation
Indices: 13175064--13175201 Score: 186
Period size: 45 Copynumber: 3.0 Consensus size: 44
13175054 CATGGCAAAG
* *
13175064 TGTGAAATGTAGGTATGATAATTCAGTAAAGAAAACCATACTGAGT
1 TGTGAAA-GTAGGTATGGTATTTCAGT-AAGAAAACCATACTGAGT
* *
13175110 AGTTGAACGTAGGTATGGTATTTCAGTAACGAAAACCATACTGAGT
1 TG-TGAAAGTAGGTATGGTATTTCAGTAA-GAAAACCATACTGAGT
*
13175156 TGTGAAAGTAAGTATGGTATTTCAGTGAAGAAAACCATACTGAGT
1 TGTGAAAGTAGGTATGGTATTTCAGT-AAGAAAACCATACTGAGT
13175201 T
1 T
13175202 TTAGCACTGT
Statistics
Matches: 82, Mismatches: 7, Indels: 7
0.85 0.07 0.07
Matches are distributed among these distances:
45 41 0.50
46 37 0.45
47 4 0.05
ACGTcount: A:0.38, C:0.10, G:0.23, T:0.29
Consensus pattern (44 bp):
TGTGAAAGTAGGTATGGTATTTCAGTAAGAAAACCATACTGAGT
Found at i:13180960 original size:26 final size:26
Alignment explanation
Indices: 13180931--13180981 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
13180921 GAATGATGAT
13180931 GTTAATTGAAATTAAGATAAGTTAAA
1 GTTAATTGAAATTAAGATAAGTTAAA
*
13180957 GTTAATTGAGATTAAGATAAGTTAA
1 GTTAATTGAAATTAAGATAAGTTAA
13180982 TTAAAGAATT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.47, C:0.00, G:0.18, T:0.35
Consensus pattern (26 bp):
GTTAATTGAAATTAAGATAAGTTAAA
Found at i:13180963 original size:20 final size:20
Alignment explanation
Indices: 13180940--13180985 Score: 58
Period size: 20 Copynumber: 2.3 Consensus size: 20
13180930 TGTTAATTGA
*
13180940 AATTAAGA-TAAGTTAAAGTT
1 AATTAAGATTAAGAT-AAGTT
*
13180960 AATTGAGATTAAGATAAGTT
1 AATTAAGATTAAGATAAGTT
13180980 AATTAA
1 AATTAA
13180986 AGAATTTATT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
20 17 0.77
21 5 0.23
ACGTcount: A:0.50, C:0.00, G:0.15, T:0.35
Consensus pattern (20 bp):
AATTAAGATTAAGATAAGTT
Found at i:13183012 original size:23 final size:23
Alignment explanation
Indices: 13182942--13183048 Score: 127
Period size: 23 Copynumber: 4.9 Consensus size: 23
13182932 CCTGATCAGT
13182942 ATACGACACAT-AAGTGCCTGA-
1 ATACGACACATAAAGTGCCTGAG
* ** *
13182963 A-ACGACAGACGAGGTGCCT--G
1 ATACGACACATAAAGTGCCTGAG
13182983 ATACGACACATAAAGTGCCTGAG
1 ATACGACACATAAAGTGCCTGAG
13183006 ATACGACACATAAAGTGCCTGATG
1 ATACGACACATAAAGTGCCTGA-G
13183030 -TACGACACATAAAGTGCCT
1 ATACGACACATAAAGTGCCT
13183049 AATCGGCAAA
Statistics
Matches: 73, Mismatches: 7, Indels: 10
0.81 0.08 0.11
Matches are distributed among these distances:
20 8 0.11
21 22 0.30
23 42 0.58
24 1 0.01
ACGTcount: A:0.36, C:0.23, G:0.22, T:0.18
Consensus pattern (23 bp):
ATACGACACATAAAGTGCCTGAG
Found at i:13184305 original size:3 final size:3
Alignment explanation
Indices: 13184297--13184334 Score: 60
Period size: 3 Copynumber: 13.0 Consensus size: 3
13184287 ATTTCACAAT
*
13184297 ATA ATA ATA ATA ATA ATA ATA ATA ATA AT- TTA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
13184335 TATTTTAACA
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
2 1 0.03
3 31 0.97
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (3 bp):
ATA
Found at i:13190108 original size:72 final size:72
Alignment explanation
Indices: 13189991--13190137 Score: 294
Period size: 72 Copynumber: 2.0 Consensus size: 72
13189981 GCGTCTATCA
13189991 AAGGCGAATTTAAAGAGTTGGCAGAGGCCTTGGCCCCCCCTAAATTTTGTAAAATTCTTTTGAAG
1 AAGGCGAATTTAAAGAGTTGGCAGAGGCCTTGGCCCCCCCTAAATTTTGTAAAATTCTTTTGAAG
13190056 GCCCTTT
66 GCCCTTT
13190063 AAGGCGAATTTAAAGAGTTGGCAGAGGCCTTGGCCCCCCCTAAATTTTGTAAAATTCTTTTGAAG
1 AAGGCGAATTTAAAGAGTTGGCAGAGGCCTTGGCCCCCCCTAAATTTTGTAAAATTCTTTTGAAG
13190128 GCCCTTT
66 GCCCTTT
13190135 AAG
1 AAG
13190138 TTTTAAATTT
Statistics
Matches: 75, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
72 75 1.00
ACGTcount: A:0.27, C:0.20, G:0.22, T:0.30
Consensus pattern (72 bp):
AAGGCGAATTTAAAGAGTTGGCAGAGGCCTTGGCCCCCCCTAAATTTTGTAAAATTCTTTTGAAG
GCCCTTT
Found at i:13199458 original size:2 final size:2
Alignment explanation
Indices: 13199453--13199484 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
13199443 TTTCTAATGA
13199453 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
13199485 TCTTAAAAAA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:13199739 original size:29 final size:29
Alignment explanation
Indices: 13199706--13199819 Score: 108
Period size: 29 Copynumber: 3.9 Consensus size: 29
13199696 CAAAAAGTAT
13199706 AAATTACATTTT-AGCCCCTAAACTTTTCA
1 AAATTACATTTTGA-CCCCTAAACTTTTCA
*
13199735 AAATTACATTTTGACCCCT-AACTTTTCTCT
1 AAATTACATTTTGACCCCTAAAC-TTT-TCA
* ** *
13199765 AATTTTTATTTTGACCCCTAATA-TTTTGA
1 AAATTACATTTTGACCCCTAA-ACTTTTCA
* *
13199794 AAATTACATTTGGGCCCCTAAACTTT
1 AAATTACATTTTGACCCCTAAACTTT
13199820 CTAGAGATTG
Statistics
Matches: 68, Mismatches: 11, Indels: 12
0.75 0.12 0.13
Matches are distributed among these distances:
28 4 0.06
29 40 0.59
30 22 0.32
31 1 0.01
32 1 0.01
ACGTcount: A:0.30, C:0.22, G:0.06, T:0.42
Consensus pattern (29 bp):
AAATTACATTTTGACCCCTAAACTTTTCA
Found at i:13200238 original size:13 final size:12
Alignment explanation
Indices: 13200220--13200283 Score: 58
Period size: 13 Copynumber: 4.9 Consensus size: 12
13200210 CACAATCAAT
13200220 CAAAAAAGAAAAG
1 CAAAAAA-AAAAG
13200233 CAAAAAAAAAAG
1 CAAAAAAAAAAG
*
13200245 ATAAAAAAAAAATG
1 -CAAAAAAAAAA-G
13200259 CAGCAAAAAAAAA-
1 CA--AAAAAAAAAG
13200272 CAAAAGAAAAAA
1 CAAAA-AAAAAA
13200284 AACTCAAAAA
Statistics
Matches: 44, Mismatches: 2, Indels: 11
0.77 0.04 0.19
Matches are distributed among these distances:
11 3 0.07
12 11 0.25
13 20 0.45
14 1 0.02
15 9 0.20
ACGTcount: A:0.80, C:0.08, G:0.09, T:0.03
Consensus pattern (12 bp):
CAAAAAAAAAAG
Found at i:13200585 original size:16 final size:16
Alignment explanation
Indices: 13200564--13200608 Score: 54
Period size: 16 Copynumber: 2.8 Consensus size: 16
13200554 AGAAGAAGAG
*
13200564 AAAAAAAAGAAATAAC
1 AAAAAAAAGAAAAAAC
* *
13200580 AAAAAAGAGAAAAAAG
1 AAAAAAAAGAAAAAAC
*
13200596 AAAAAAAGGAAAA
1 AAAAAAAAGAAAA
13200609 TTTTAAAAAA
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
16 24 1.00
ACGTcount: A:0.82, C:0.02, G:0.13, T:0.02
Consensus pattern (16 bp):
AAAAAAAAGAAAAAAC
Found at i:13200804 original size:18 final size:18
Alignment explanation
Indices: 13200744--13200807 Score: 78
Period size: 18 Copynumber: 3.5 Consensus size: 18
13200734 AGCTCCCCAG
13200744 CAGCAGGCCAGGCCCAAT
1 CAGCAGGCCAGGCCCAAT
*
13200762 C-CCAGG-CAGCAGCCCAAT
1 CAGCAGGCCAG--GCCCAAT
13200780 GCAGCAGGCCAGGCCCAAT
1 -CAGCAGGCCAGGCCCAAT
13200799 CAGCAGGCC
1 CAGCAGGCC
13200808 TAGCAGGCCA
Statistics
Matches: 39, Mismatches: 2, Indels: 10
0.76 0.04 0.20
Matches are distributed among these distances:
16 3 0.08
17 4 0.10
18 17 0.44
19 8 0.21
20 4 0.10
21 3 0.08
ACGTcount: A:0.27, C:0.41, G:0.28, T:0.05
Consensus pattern (18 bp):
CAGCAGGCCAGGCCCAAT
Found at i:13201492 original size:17 final size:18
Alignment explanation
Indices: 13201452--13201564 Score: 85
Period size: 18 Copynumber: 6.3 Consensus size: 18
13201442 TCGAAAAATT
13201452 CGTG-TTTCAAAAA--TC
1 CGTGTTTTCAAAAATTTC
*
13201467 TGTGTTTTCAAAAA-TTC
1 CGTGTTTTCAAAAATTTC
13201484 CG-GTATTTCAAAAATTTC
1 CGTGT-TTTCAAAAATTTC
*
13201502 CGTGTTTTCAAAAAAATTC
1 CGTGTTTTC-AAAAATTTC
* *
13201521 TGTG-TTTCAAAAAAAATTTT
1 CGTGTTTTC---AAAAATTTC
* *
13201541 CGTGTTTTCAACAATTTT
1 CGTGTTTTCAAAAATTTC
13201559 CGTGTT
1 CGTGTT
13201565 AAAAAAAATT
Statistics
Matches: 81, Mismatches: 8, Indels: 15
0.78 0.08 0.14
Matches are distributed among these distances:
15 3 0.04
16 11 0.14
17 12 0.15
18 27 0.33
19 13 0.16
20 11 0.14
21 4 0.05
ACGTcount: A:0.31, C:0.14, G:0.12, T:0.42
Consensus pattern (18 bp):
CGTGTTTTCAAAAATTTC
Found at i:13201502 original size:18 final size:17
Alignment explanation
Indices: 13201445--13201533 Score: 89
Period size: 16 Copynumber: 5.3 Consensus size: 17
13201435 GGAAAAATCG
13201445 AAAAATT-CGTG-TTTC
1 AAAAATTCCGTGTTTTC
*
13201460 AAAAA-TCTGTGTTTTC
1 AAAAATTCCGTGTTTTC
13201476 AAAAATTCCG-GTATTTC
1 AAAAATTCCGTGT-TTTC
13201493 AAAAATTTCCGTGTTTTC
1 AAAAA-TTCCGTGTTTTC
*
13201511 AAAAAAATTCTGTG-TTTC
1 --AAAAATTCCGTGTTTTC
13201529 AAAAA
1 AAAAA
13201534 AAATTTTCGT
Statistics
Matches: 63, Mismatches: 3, Indels: 15
0.78 0.04 0.19
Matches are distributed among these distances:
14 1 0.02
15 8 0.13
16 16 0.25
17 12 0.19
18 13 0.21
19 8 0.13
20 5 0.08
ACGTcount: A:0.37, C:0.13, G:0.11, T:0.38
Consensus pattern (17 bp):
AAAAATTCCGTGTTTTC
Found at i:13201518 original size:20 final size:20
Alignment explanation
Indices: 13201493--13201551 Score: 77
Period size: 19 Copynumber: 3.0 Consensus size: 20
13201483 CCGGTATTTC
13201493 AAAAATTTCCGTGTTTTCAA
1 AAAAATTTCCGTGTTTTCAA
*
13201513 AAAAA-TTCTGTG-TTTCAAA
1 AAAAATTTCCGTGTTTTC-AA
*
13201532 AAAAATTTTCGTGTTTTCAA
1 AAAAATTTCCGTGTTTTCAA
13201552 CAATTTTCGT
Statistics
Matches: 33, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
18 4 0.12
19 13 0.39
20 12 0.36
21 4 0.12
ACGTcount: A:0.37, C:0.12, G:0.10, T:0.41
Consensus pattern (20 bp):
AAAAATTTCCGTGTTTTCAA
Found at i:13201587 original size:18 final size:18
Alignment explanation
Indices: 13201493--13201590 Score: 69
Period size: 18 Copynumber: 5.3 Consensus size: 18
13201483 CCGGTATTTC
13201493 AAAAATTTCCGTGTTTTCAA
1 AAAAATTT--GTGTTTTCAA
13201513 AAAAATTCTGTG-TTTCAAA
1 AAAAATT-TGTGTTTTC-AA
13201532 AAAAATTTTCGTGTTTTC--
1 AAAAA-TTT-GTGTTTTCAA
* * *
13201550 AACAATTT-TCGTGTTAAA
1 AAAAATTTGT-GTTTTCAA
*
13201568 AAAAATTTGAGTTTTCAA
1 AAAAATTTGTGTTTTCAA
13201586 AAAAA
1 AAAAA
13201591 AAAAATTCTC
Statistics
Matches: 62, Mismatches: 7, Indels: 20
0.70 0.08 0.22
Matches are distributed among these distances:
15 1 0.02
16 4 0.06
17 3 0.05
18 26 0.42
19 11 0.18
20 12 0.19
21 5 0.08
ACGTcount: A:0.41, C:0.10, G:0.10, T:0.39
Consensus pattern (18 bp):
AAAAATTTGTGTTTTCAA
Found at i:13201662 original size:18 final size:18
Alignment explanation
Indices: 13201604--13201715 Score: 85
Period size: 18 Copynumber: 6.5 Consensus size: 18
13201594 AATTCTCGCA
* *
13201604 TTTCATAAATTTTCGTAT
1 TTTCAAAAATTTTCGTGT
* * *
13201622 TTTCAAAAAAAATCTCATG-
1 TTTC--AAAAATTTTCGTGT
13201641 TTTCAAAAATTTTCGTGT
1 TTTCAAAAATTTTCGTGT
13201659 TTTCAAAAATTTTCGTGT
1 TTTCAAAAATTTTCGTGT
* *
13201677 TTT-AGAAA-TTT-GCG-
1 TTTCAAAAATTTTCGTGT
*
13201691 -TTC-AAAATTTCCGTGT
1 TTTCAAAAATTTTCGTGT
13201707 TTTCAAAAA
1 TTTCAAAAA
13201716 AAAATATTGT
Statistics
Matches: 72, Mismatches: 13, Indels: 18
0.70 0.13 0.17
Matches are distributed among these distances:
13 5 0.07
14 2 0.03
15 4 0.06
16 3 0.04
17 17 0.24
18 29 0.40
19 4 0.06
20 8 0.11
ACGTcount: A:0.33, C:0.12, G:0.10, T:0.45
Consensus pattern (18 bp):
TTTCAAAAATTTTCGTGT
Found at i:13209323 original size:24 final size:24
Alignment explanation
Indices: 13209295--13209344 Score: 100
Period size: 24 Copynumber: 2.1 Consensus size: 24
13209285 TGAGAGAAAA
13209295 ATAGTGGGACAAGAGAGGGAAACT
1 ATAGTGGGACAAGAGAGGGAAACT
13209319 ATAGTGGGACAAGAGAGGGAAACT
1 ATAGTGGGACAAGAGAGGGAAACT
13209343 AT
1 AT
13209345 GTAAAATAGA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.42, C:0.08, G:0.36, T:0.14
Consensus pattern (24 bp):
ATAGTGGGACAAGAGAGGGAAACT
Found at i:13210098 original size:27 final size:27
Alignment explanation
Indices: 13210068--13210122 Score: 67
Period size: 28 Copynumber: 2.0 Consensus size: 27
13210058 TACAATCGAC
13210068 TTTTCATTGAAAA-ATACATAATTTGAT
1 TTTTC-TTGAAAACATACATAATTTGAT
* *
13210095 TTTTCTTTAAAAGCATGCATAATTTGAT
1 TTTTCTTGAAAA-CATACATAATTTGAT
13210123 AGTTTAATTT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
26 6 0.25
27 5 0.21
28 13 0.54
ACGTcount: A:0.36, C:0.09, G:0.09, T:0.45
Consensus pattern (27 bp):
TTTTCTTGAAAACATACATAATTTGAT
Found at i:13213875 original size:3 final size:3
Alignment explanation
Indices: 13213867--13213900 Score: 59
Period size: 3 Copynumber: 11.3 Consensus size: 3
13213857 GAAAACTGAA
*
13213867 TTC TTC TTC TTC TTC TTC TTT TTC TTC TTC TTC T
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC T
13213901 GACAGGCGCT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.00, C:0.29, G:0.00, T:0.71
Consensus pattern (3 bp):
TTC
Found at i:13217283 original size:5 final size:5
Alignment explanation
Indices: 13217273--13217298 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
13217263 TGAGCATTCG
13217273 ATCGA ATCGA ATCGA ATCGA ATCGA A
1 ATCGA ATCGA ATCGA ATCGA ATCGA A
13217299 AATTTTCAAG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.42, C:0.19, G:0.19, T:0.19
Consensus pattern (5 bp):
ATCGA
Found at i:13217780 original size:19 final size:19
Alignment explanation
Indices: 13217747--13217794 Score: 57
Period size: 19 Copynumber: 2.6 Consensus size: 19
13217737 TAAACAATTC
13217747 AATAATATAAA--TAATAT
1 AATAATATAAATTTAATAT
*
13217764 AA-AATATGAAATTTAATTT
1 AATAATAT-AAATTTAATAT
13217783 AATAATATAAAT
1 AATAATATAAAT
13217795 AGTAGATATA
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
16 5 0.19
17 5 0.19
19 11 0.42
20 5 0.19
ACGTcount: A:0.60, C:0.00, G:0.02, T:0.38
Consensus pattern (19 bp):
AATAATATAAATTTAATAT
Found at i:13219843 original size:2 final size:2
Alignment explanation
Indices: 13219836--13219862 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
13219826 NNNNNNNNNN
13219836 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
13219863 GATTGTGTTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:13232059 original size:6 final size:6
Alignment explanation
Indices: 13232050--13232077 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
13232040 ATGAAGATGT
13232050 GGGTGA GGGTGA GGGTGA GGGTGA GGGT
1 GGGTGA GGGTGA GGGTGA GGGTGA GGGT
13232078 TCAATGAGGG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.14, C:0.00, G:0.68, T:0.18
Consensus pattern (6 bp):
GGGTGA
Found at i:13233123 original size:41 final size:41
Alignment explanation
Indices: 13233063--13233146 Score: 159
Period size: 41 Copynumber: 2.0 Consensus size: 41
13233053 TCATGGGAAT
*
13233063 TAAACACAACTTACTTTATCTTTCAATTAAACATTATAAGC
1 TAAACACAACTTACCTTATCTTTCAATTAAACATTATAAGC
13233104 TAAACACAACTTACCTTATCTTTCAATTAAACATTATAAGC
1 TAAACACAACTTACCTTATCTTTCAATTAAACATTATAAGC
13233145 TA
1 TA
13233147 TTTGGCTTGG
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 42 1.00
ACGTcount: A:0.42, C:0.20, G:0.02, T:0.36
Consensus pattern (41 bp):
TAAACACAACTTACCTTATCTTTCAATTAAACATTATAAGC
Found at i:13234011 original size:17 final size:18
Alignment explanation
Indices: 13233991--13234029 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
13233981 TGTAAAGAAC
13233991 AAAATTAT-TTAAAATAT
1 AAAATTATATTAAAATAT
* *
13234008 AAAATTATATTATAATTT
1 AAAATTATATTAAAATAT
13234026 AAAA
1 AAAA
13234030 AAAACACTCT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
17 8 0.42
18 11 0.58
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (18 bp):
AAAATTATATTAAAATAT
Found at i:13248881 original size:25 final size:25
Alignment explanation
Indices: 13248799--13248933 Score: 131
Period size: 25 Copynumber: 5.6 Consensus size: 25
13248789 TTGTTATGCA
*
13248799 CTAATGAA-CAGAGAGCACTGAAGTG
1 CTAAT-AATCAGAGAGCACTGACGTG
* * *
13248824 CT-AT-A-CAGAGAACACAGATGTG
1 CTAATAATCAGAGAGCACTGACGTG
*
13248846 CT-A-AA-CAGAGAGCATTGACGTG
1 CTAATAATCAGAGAGCACTGACGTG
* *
13248868 CTAGTAATCAGAGAGCACTAACGTG
1 CTAATAATCAGAGAGCACTGACGTG
* *
13248893 CTAATAATCAAAGAGCACTGATGTG
1 CTAATAATCAGAGAGCACTGACGTG
13248918 CTAATAATCAGAGAGC
1 CTAATAATCAGAGAGC
13248934 GTGCTAAATT
Statistics
Matches: 91, Mismatches: 15, Indels: 8
0.80 0.13 0.07
Matches are distributed among these distances:
22 34 0.37
24 4 0.04
25 53 0.58
ACGTcount: A:0.39, C:0.18, G:0.24, T:0.19
Consensus pattern (25 bp):
CTAATAATCAGAGAGCACTGACGTG
Found at i:13249844 original size:26 final size:27
Alignment explanation
Indices: 13249799--13249850 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 27
13249789 AAATCCCAAA
*
13249799 TTTTCTTTCTTTCCTTCCCT-TTTTCT
1 TTTTCTTTCTTTCCTCCCCTGTTTTCT
13249825 TTTTCTTTCCTTT-CTCCCCTGTTTTC
1 TTTTCTTT-CTTTCCTCCCCTGTTTTC
13249851 GATTTGCTAT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
26 14 0.61
27 9 0.39
ACGTcount: A:0.00, C:0.33, G:0.02, T:0.65
Consensus pattern (27 bp):
TTTTCTTTCTTTCCTCCCCTGTTTTCT
Found at i:13249974 original size:23 final size:23
Alignment explanation
Indices: 13249944--13249990 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 23
13249934 AATAAGCATG
13249944 TACATATATTAAATACAAATGTA
1 TACATATATTAAATACAAATGTA
* * *
13249967 TACATATATTGATTACACATGTA
1 TACATATATTAAATACAAATGTA
13249990 T
1 T
13249991 TTATAATTAC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.45, C:0.11, G:0.06, T:0.38
Consensus pattern (23 bp):
TACATATATTAAATACAAATGTA
Found at i:13267314 original size:21 final size:22
Alignment explanation
Indices: 13267289--13267329 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
13267279 AAATTTATTA
*
13267289 AAAAATAATTTG-AAAAAAGAT
1 AAAAATAATTAGTAAAAAAGAT
*
13267310 AAAAATTATTAGTAAAAAAG
1 AAAAATAATTAGTAAAAAAG
13267330 TTTTTAAAAT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 10 0.59
22 7 0.41
ACGTcount: A:0.66, C:0.00, G:0.10, T:0.24
Consensus pattern (22 bp):
AAAAATAATTAGTAAAAAAGAT
Found at i:13270497 original size:39 final size:39
Alignment explanation
Indices: 13270438--13270518 Score: 153
Period size: 39 Copynumber: 2.1 Consensus size: 39
13270428 TTCTGTTCTT
13270438 TGTCGTGTGAAACGTGGTGGTCGATATGTATGCTCATAA
1 TGTCGTGTGAAACGTGGTGGTCGATATGTATGCTCATAA
*
13270477 TGTCTTGTGAAACGTGGTGGTCGATATGTATGCTCATAA
1 TGTCGTGTGAAACGTGGTGGTCGATATGTATGCTCATAA
13270516 TGT
1 TGT
13270519 AACCCATTTC
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
39 41 1.00
ACGTcount: A:0.22, C:0.12, G:0.30, T:0.36
Consensus pattern (39 bp):
TGTCGTGTGAAACGTGGTGGTCGATATGTATGCTCATAA
Found at i:13284764 original size:30 final size:30
Alignment explanation
Indices: 13284728--13284787 Score: 120
Period size: 30 Copynumber: 2.0 Consensus size: 30
13284718 ATGAAGAGTG
13284728 AAATTGATTTCATAGGTACTTGGGTCTTTC
1 AAATTGATTTCATAGGTACTTGGGTCTTTC
13284758 AAATTGATTTCATAGGTACTTGGGTCTTTC
1 AAATTGATTTCATAGGTACTTGGGTCTTTC
13284788 TATATCAAAA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.23, C:0.13, G:0.20, T:0.43
Consensus pattern (30 bp):
AAATTGATTTCATAGGTACTTGGGTCTTTC
Found at i:13286998 original size:2 final size:2
Alignment explanation
Indices: 13286991--13287018 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
13286981 CCGCCTGAAC
13286991 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
13287019 TTGGTTCATC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:13290147 original size:17 final size:19
Alignment explanation
Indices: 13290100--13290148 Score: 59
Period size: 17 Copynumber: 2.7 Consensus size: 19
13290090 TATATATTGC
*
13290100 ATATAAATTATTATTTTTAA
1 ATATACATTATT-TTTTTAA
13290120 ATATACA-TATTTTTTT-A
1 ATATACATTATTTTTTTAA
13290137 A-ATACATTATTT
1 ATATACATTATTT
13290149 CTGTGTAATA
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
16 5 0.19
17 7 0.26
18 5 0.19
19 4 0.15
20 6 0.22
ACGTcount: A:0.41, C:0.04, G:0.00, T:0.55
Consensus pattern (19 bp):
ATATACATTATTTTTTTAA
Found at i:13290675 original size:3 final size:3
Alignment explanation
Indices: 13290667--13290699 Score: 59
Period size: 3 Copynumber: 11.3 Consensus size: 3
13290657 GAGAGAAAGG
13290667 AGA AGA AG- AGA AGA AGA AGA AGA AGA AGA AGA A
1 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA A
13290700 AGATAAAAAA
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
2 2 0.07
3 27 0.93
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (3 bp):
AGA
Found at i:13290902 original size:62 final size:59
Alignment explanation
Indices: 13290835--13290995 Score: 171
Period size: 60 Copynumber: 2.6 Consensus size: 59
13290825 ATAGTTTTGG
* * * *
13290835 ATTAGTATTTTGTATGAATATTATAATTTTTTTGCTTTTTATAATTATTTTAAAATTAATTT
1 ATTAGTATTTAGGAT-AATATTATAA-ATTTTTG-TGTTTATAATTATTTTAAAATTAATTT
* * * *
13290897 GTTAGTAATTTAGGATTATGTTATAAATTTTTGTGTTTGTAATTATTTTAAAATTAATTT
1 ATTAGT-ATTTAGGATAATATTATAAATTTTTGTGTTTATAATTATTTTAAAATTAATTT
**
13290957 ATTAGTAATTTAGGATTAA-ATTATAAATTGATGTGTTTA
1 ATTAGT-ATTTAGGA-TAATATTATAAATTTTTGTGTTTA
13290996 GTTTAGTATT
Statistics
Matches: 83, Mismatches: 14, Indels: 6
0.81 0.14 0.06
Matches are distributed among these distances:
60 55 0.66
61 8 0.10
62 13 0.16
63 7 0.08
ACGTcount: A:0.34, C:0.01, G:0.11, T:0.55
Consensus pattern (59 bp):
ATTAGTATTTAGGATAATATTATAAATTTTTGTGTTTATAATTATTTTAAAATTAATTT
Found at i:13290952 original size:60 final size:60
Alignment explanation
Indices: 13290876--13290994 Score: 193
Period size: 60 Copynumber: 2.0 Consensus size: 60
13290866 TTGCTTTTTA
* ** **
13290876 TAATTATTTTAAAATTAATTTGTTAGTAATTTAGGATTATGTTATAAATTTTTGTGTTTG
1 TAATTATTTTAAAATTAATTTATTAGTAATTTAGGATTAAATTATAAATTGATGTGTTTG
13290936 TAATTATTTTAAAATTAATTTATTAGTAATTTAGGATTAAATTATAAATTGATGTGTTT
1 TAATTATTTTAAAATTAATTTATTAGTAATTTAGGATTAAATTATAAATTGATGTGTTT
13290995 AGTTTAGTAT
Statistics
Matches: 54, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
60 54 1.00
ACGTcount: A:0.35, C:0.00, G:0.12, T:0.53
Consensus pattern (60 bp):
TAATTATTTTAAAATTAATTTATTAGTAATTTAGGATTAAATTATAAATTGATGTGTTTG
Found at i:13291132 original size:16 final size:16
Alignment explanation
Indices: 13291108--13291146 Score: 69
Period size: 16 Copynumber: 2.4 Consensus size: 16
13291098 TTAACTCATT
13291108 TAATTTTTATATAATG
1 TAATTTTTATATAATG
*
13291124 TACTTTTTATATAATG
1 TAATTTTTATATAATG
13291140 TAATTTT
1 TAATTTT
13291147 ATTTGATTTT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.33, C:0.03, G:0.05, T:0.59
Consensus pattern (16 bp):
TAATTTTTATATAATG
Found at i:13293240 original size:2 final size:2
Alignment explanation
Indices: 13293233--13293275 Score: 77
Period size: 2 Copynumber: 21.5 Consensus size: 2
13293223 CTACTTCTTA
*
13293233 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT TT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
13293275 A
1 A
13293276 CTCTTCATAC
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 39 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
AT
Found at i:13303564 original size:45 final size:44
Alignment explanation
Indices: 13303498--13303595 Score: 133
Period size: 45 Copynumber: 2.2 Consensus size: 44
13303488 GGATTAAAGG
*
13303498 TGTAATGGAATAGAGGTGTAATAGCAAATCAACTGTTTGGTTGAA
1 TGTAATGGAATAGAGGCGTAATAGCAAA-CAACTGTTTGGTTGAA
* ***
13303543 TGTAATGGAATAGAGGCGTAATAGTAAACTTGTGTTTGGTTGAA
1 TGTAATGGAATAGAGGCGTAATAGCAAACAACTGTTTGGTTGAA
*
13303587 TGGAATGGA
1 TGTAATGGA
13303596 GTTGTAATAG
Statistics
Matches: 47, Mismatches: 6, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
44 21 0.45
45 26 0.55
ACGTcount: A:0.34, C:0.05, G:0.30, T:0.32
Consensus pattern (44 bp):
TGTAATGGAATAGAGGCGTAATAGCAAACAACTGTTTGGTTGAA
Found at i:13303761 original size:26 final size:26
Alignment explanation
Indices: 13303732--13303965 Score: 104
Period size: 26 Copynumber: 9.2 Consensus size: 26
13303722 TTAATCATAT
*
13303732 TTTAACATAATTATTATTAAATATAA
1 TTTAAAATAATTATTATTAAATATAA
* * * * *
13303758 TTTAATAAAAATATATGAATTTACTAAAA
1 TTTAA-AATAAT-TAT-TATTAAATATAA
*
13303787 TTATAATATATAA-TATTATAAAATATAA
1 TT-TAA-A-ATAATTATTATTAAATATAA
13303815 TTTAAAATAATTATTATTAAATATAA
1 TTTAAAATAATTATTATTAAATATAA
* *
13303841 TTTAACAA-AAATA-TA-T-AATTTAA
1 TTTAA-AATAATTATTATTAAATATAA
** *
13303864 --TAAAATTCTTAGTATTAAATAT--
1 TTTAAAATAATTATTATTAAATATAA
* *
13303886 TCTT-ATATGAA-T-TTACTAAAATCATAA
1 T-TTAAAAT-AATTATTA-TTAAAT-ATAA
* * *
13303913 --T-ATATAA-TACTATAAAATATAA
1 TTTAAAATAATTATTATTAAATATAA
13303935 TTTAAAATAATTATTATTAAATATAA
1 TTTAAAATAATTATTATTAAATATAA
13303961 TTTAA
1 TTTAA
13303966 CAAAAATATA
Statistics
Matches: 156, Mismatches: 28, Indels: 48
0.67 0.12 0.21
Matches are distributed among these distances:
20 2 0.01
21 5 0.03
22 6 0.04
23 18 0.12
24 22 0.14
25 14 0.09
26 47 0.30
27 9 0.06
28 12 0.08
29 13 0.08
30 5 0.03
31 3 0.02
ACGTcount: A:0.53, C:0.03, G:0.01, T:0.43
Consensus pattern (26 bp):
TTTAAAATAATTATTATTAAATATAA
Found at i:13303786 original size:18 final size:18
Alignment explanation
Indices: 13303752--13303868 Score: 63
Period size: 18 Copynumber: 6.9 Consensus size: 18
13303742 TTATTATTAA
13303752 ATATAATTTAATAAAAAT
1 ATATAATTTAATAAAAAT
*
13303770 ATATGAATTTACT-AAAAT
1 ATAT-AATTTAATAAAAAT
* * *
13303788 -TATAATAT-ATAATATT
1 ATATAATTTAATAAAAAT
* * *
13303804 ATAAAATATAATTTAAAAT
1 ATATAATTTAA-TAAAAAT
* *
13303823 A-ATTA-TT-AT--TAA-
1 ATATAATTTAATAAAAAT
*
13303835 ATATAATTTAACAAAAAT
1 ATATAATTTAATAAAAAT
13303853 ATATAATTTAATAAAA
1 ATATAATTTAATAAAA
13303869 TTCTTAGTAT
Statistics
Matches: 71, Mismatches: 17, Indels: 22
0.65 0.15 0.20
Matches are distributed among these distances:
12 1 0.01
13 5 0.07
14 2 0.03
15 3 0.04
16 8 0.11
17 13 0.18
18 27 0.38
19 12 0.17
ACGTcount: A:0.57, C:0.02, G:0.01, T:0.40
Consensus pattern (18 bp):
ATATAATTTAATAAAAAT
Found at i:13303797 original size:24 final size:22
Alignment explanation
Indices: 13303767--13303815 Score: 64
Period size: 24 Copynumber: 2.1 Consensus size: 22
13303757 ATTTAATAAA
13303767 AATATATGAAT-TTACTAAAATTAT
1 AATATAT-AATATTA-TAAAA-TAT
13303791 AATATATAATATTATAAAATAT
1 AATATATAATATTATAAAATAT
13303813 AAT
1 AAT
13303816 TTAAAATAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
22 6 0.25
23 8 0.33
24 10 0.42
ACGTcount: A:0.55, C:0.02, G:0.02, T:0.41
Consensus pattern (22 bp):
AATATATAATATTATAAAATAT
Found at i:13303806 original size:15 final size:15
Alignment explanation
Indices: 13303786--13303841 Score: 57
Period size: 15 Copynumber: 4.0 Consensus size: 15
13303776 ATTTACTAAA
*
13303786 ATTATAATATATAAT
1 ATTATAAAATATAAT
13303801 ATTATAAAATAT-A-
1 ATTATAAAATATAAT
*
13303814 ATT-TAAAATA-ATT
1 ATTATAAAATATAAT
*
13303827 ATTATTAAATATAAT
1 ATTATAAAATATAAT
13303842 TTAACAAAAA
Statistics
Matches: 33, Mismatches: 4, Indels: 8
0.73 0.09 0.18
Matches are distributed among these distances:
12 7 0.21
13 6 0.18
14 7 0.21
15 13 0.39
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (15 bp):
ATTATAAAATATAAT
Found at i:13303867 original size:59 final size:59
Alignment explanation
Indices: 13303791--13303989 Score: 210
Period size: 59 Copynumber: 3.3 Consensus size: 59
13303781 CTAAAATTAT
13303791 AATATATAATATTATAAAATATAATTTAAAATAATTATTATTAAATATAATTTAACAAA
1 AATATATAATATTATAAAATATAATTTAAAATAATTATTATTAAATATAATTTAACAAA
* * * * * * ** *
13303850 AATATATAAT-TTAATAAAATTCTTAGTATT-AAAT-ATTCTTATATGAATTTACTAAAATC-AT
1 AATATATAATATT-ATAAAA-T-ATAAT-TTAAAATAATTATTAT-TAAATATAATTTAA-CAAA
*
13303911 AATATATAATACTATAAAATATAATTTAAAATAATTATTATTAAATATAATTTAACAAA
1 AATATATAATATTATAAAATATAATTTAAAATAATTATTATTAAATATAATTTAACAAA
13303970 AATATATAAT-TTAATAAAAT
1 AATATATAATATT-ATAAAAT
13303990 TCTTAGTATT
Statistics
Matches: 109, Mismatches: 20, Indels: 22
0.72 0.13 0.15
Matches are distributed among these distances:
58 6 0.06
59 50 0.46
60 16 0.15
61 33 0.30
62 4 0.04
ACGTcount: A:0.54, C:0.04, G:0.01, T:0.41
Consensus pattern (59 bp):
AATATATAATATTATAAAATATAATTTAAAATAATTATTATTAAATATAATTTAACAAA
Found at i:13303901 original size:120 final size:120
Alignment explanation
Indices: 13303769--13304011 Score: 468
Period size: 120 Copynumber: 2.0 Consensus size: 120
13303759 TTAATAAAAA
* *
13303769 TATATGAATTTACTAAAATTATAATATATAATATTATAAAATATAATTTAAAATAATTATTATTA
1 TATATGAATTTACTAAAATCATAATATATAATACTATAAAATATAATTTAAAATAATTATTATTA
13303834 AATATAATTTAACAAAAATATATAATTTAATAAAATTCTTAGTATTAAATATTCT
66 AATATAATTTAACAAAAATATATAATTTAATAAAATTCTTAGTATTAAATATTCT
13303889 TATATGAATTTACTAAAATCATAATATATAATACTATAAAATATAATTTAAAATAATTATTATTA
1 TATATGAATTTACTAAAATCATAATATATAATACTATAAAATATAATTTAAAATAATTATTATTA
13303954 AATATAATTTAACAAAAATATATAATTTAATAAAATTCTTAGTATTAAATATTCT
66 AATATAATTTAACAAAAATATATAATTTAATAAAATTCTTAGTATTAAATATTCT
13304009 TAT
1 TAT
13304012 GATTGTATCA
Statistics
Matches: 121, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
120 121 1.00
ACGTcount: A:0.51, C:0.04, G:0.02, T:0.43
Consensus pattern (120 bp):
TATATGAATTTACTAAAATCATAATATATAATACTATAAAATATAATTTAAAATAATTATTATTA
AATATAATTTAACAAAAATATATAATTTAATAAAATTCTTAGTATTAAATATTCT
Found at i:13307986 original size:9 final size:9
Alignment explanation
Indices: 13307972--13308014 Score: 68
Period size: 9 Copynumber: 4.8 Consensus size: 9
13307962 GTTTTCGAAT
13307972 TCGAATAAC
1 TCGAATAAC
13307981 TCGAATAAC
1 TCGAATAAC
*
13307990 TCGAATAAT
1 TCGAATAAC
*
13307999 TCGAATAAT
1 TCGAATAAC
13308008 TCGAATA
1 TCGAATA
13308015 TCAAATTATA
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
9 33 1.00
ACGTcount: A:0.44, C:0.16, G:0.12, T:0.28
Consensus pattern (9 bp):
TCGAATAAC
Found at i:13315541 original size:17 final size:17
Alignment explanation
Indices: 13315519--13315552 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
13315509 TCACATGGGC
13315519 AATCCAAAGCAAGAAGG
1 AATCCAAAGCAAGAAGG
13315536 AATCCAAAGCAAGAAGG
1 AATCCAAAGCAAGAAGG
13315553 CAAACGTGGC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.53, C:0.18, G:0.24, T:0.06
Consensus pattern (17 bp):
AATCCAAAGCAAGAAGG
Found at i:13327451 original size:18 final size:18
Alignment explanation
Indices: 13327419--13327462 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 18
13327409 AGTAAAATTT
*
13327419 TATTATGATTAAAAAATAA
1 TATTAT-ATTAAAAAACAA
*
13327438 TATTATATTTAAAAACAA
1 TATTATATTAAAAAACAA
*
13327456 TAATATA
1 TATTATA
13327463 AAAAATAAAT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
18 16 0.73
19 6 0.27
ACGTcount: A:0.57, C:0.02, G:0.02, T:0.39
Consensus pattern (18 bp):
TATTATATTAAAAAACAA
Found at i:13343187 original size:29 final size:29
Alignment explanation
Indices: 13343155--13343229 Score: 107
Period size: 29 Copynumber: 2.6 Consensus size: 29
13343145 TAATAACAGT
*
13343155 ATAAAACT-AGATCAAAATGTTTCCCATAA
1 ATAAAACTGAGAGC-AAATGTTTCCCATAA
*
13343184 ATAAAAGTGAGAGCAAATGTTTCCCATAA
1 ATAAAACTGAGAGCAAATGTTTCCCATAA
*
13343213 ATAAAAGTGAGAGCAAA
1 ATAAAACTGAGAGCAAA
13343230 AATGCATAAA
Statistics
Matches: 43, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
29 39 0.91
30 4 0.09
ACGTcount: A:0.49, C:0.13, G:0.15, T:0.23
Consensus pattern (29 bp):
ATAAAACTGAGAGCAAATGTTTCCCATAA
Found at i:13348392 original size:21 final size:22
Alignment explanation
Indices: 13348367--13348414 Score: 57
Period size: 21 Copynumber: 2.3 Consensus size: 22
13348357 AAAATATCTT
13348367 TTTAAAT-ATTA-ATTACAAATA
1 TTTAAATGATTATATT-CAAATA
*
13348388 TTT-AATGATTATATTTAAATA
1 TTTAAATGATTATATTCAAATA
13348409 TTTAAA
1 TTTAAA
13348415 ATATAGTTTA
Statistics
Matches: 23, Mismatches: 1, Indels: 5
0.79 0.03 0.17
Matches are distributed among these distances:
20 3 0.13
21 15 0.65
22 5 0.22
ACGTcount: A:0.48, C:0.02, G:0.02, T:0.48
Consensus pattern (22 bp):
TTTAAATGATTATATTCAAATA
Found at i:13348468 original size:24 final size:24
Alignment explanation
Indices: 13348441--13348486 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
13348431 CTAATTAAAT
* *
13348441 TTTATAAATAATTAATATTTATTG
1 TTTAAAAATAATTAAAATTTATTG
*
13348465 TTTAAAAATATTTAAAATTTAT
1 TTTAAAAATAATTAAAATTTAT
13348487 ATTTCATATA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.52
Consensus pattern (24 bp):
TTTAAAAATAATTAAAATTTATTG
Found at i:13356717 original size:13 final size:13
Alignment explanation
Indices: 13356699--13356724 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
13356689 AAGATTGGGA
13356699 GAAACCTTGTTCT
1 GAAACCTTGTTCT
13356712 GAAACCTTGTTCT
1 GAAACCTTGTTCT
13356725 TCCTTTTCAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.23, C:0.23, G:0.15, T:0.38
Consensus pattern (13 bp):
GAAACCTTGTTCT
Found at i:13361212 original size:22 final size:22
Alignment explanation
Indices: 13361169--13361217 Score: 55
Period size: 22 Copynumber: 2.2 Consensus size: 22
13361159 TTCTCCTTGT
*
13361169 ATTTTTATTTTTAGAATATTAA
1 ATTTTTATTTTCAGAATATTAA
* *
13361191 TTTTTTATCTTTCA-AATTTTAA
1 ATTTTTAT-TTTCAGAATATTAA
13361213 ATTTT
1 ATTTT
13361218 AAGTCCAGTT
Statistics
Matches: 22, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
22 18 0.82
23 4 0.18
ACGTcount: A:0.31, C:0.04, G:0.02, T:0.63
Consensus pattern (22 bp):
ATTTTTATTTTCAGAATATTAA
Found at i:13364391 original size:3 final size:3
Alignment explanation
Indices: 13364383--13364411 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
13364373 CATATTTTAA
13364383 TTC TTC TTC TTC TTC TTC TTC TTC TTC TT
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TT
13364412 TCTGTAACTA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.00, C:0.31, G:0.00, T:0.69
Consensus pattern (3 bp):
TTC
Found at i:13370383 original size:14 final size:14
Alignment explanation
Indices: 13370364--13370397 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
13370354 GTTTGGCAGT
*
13370364 AAAATGGTTTCCGG
1 AAAATGATTTCCGG
*
13370378 AAAATGATTTCTGG
1 AAAATGATTTCCGG
13370392 AAAATG
1 AAAATG
13370398 TTTTACTTTT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.38, C:0.09, G:0.24, T:0.29
Consensus pattern (14 bp):
AAAATGATTTCCGG
Found at i:13370410 original size:20 final size:20
Alignment explanation
Indices: 13370385--13370424 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
13370375 CGGAAAATGA
* *
13370385 TTTCTGGAAAATGTTTTACT
1 TTTCTGAAAAATGATTTACT
13370405 TTTCTGAAAAATGATTTACT
1 TTTCTGAAAAATGATTTACT
13370425 GGAAAATATT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.30, C:0.10, G:0.12, T:0.47
Consensus pattern (20 bp):
TTTCTGAAAAATGATTTACT
Found at i:13370440 original size:14 final size:15
Alignment explanation
Indices: 13370371--13370440 Score: 54
Period size: 14 Copynumber: 4.5 Consensus size: 15
13370361 AGTAAAATGG
*
13370371 TTTCCGGAAAATGA-
1 TTTCTGGAAAATGAT
13370385 TTTCTGGAAAATGTTTTACT
1 TTTCTGGAAAATG----A-T
*
13370405 TTTCTGAAAAATGAT
1 TTTCTGGAAAATGAT
*
13370420 TTACTGGAAAAT-AT
1 TTTCTGGAAAATGAT
13370434 TTTCTGG
1 TTTCTGG
13370441 TGTTTGAATT
Statistics
Matches: 45, Mismatches: 5, Indels: 12
0.73 0.08 0.19
Matches are distributed among these distances:
14 20 0.44
15 11 0.24
16 1 0.02
18 1 0.02
20 12 0.27
ACGTcount: A:0.31, C:0.10, G:0.17, T:0.41
Consensus pattern (15 bp):
TTTCTGGAAAATGAT
Found at i:13370551 original size:18 final size:18
Alignment explanation
Indices: 13370524--13370566 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 18
13370514 ATTTTACATA
13370524 TATATATTAATATT-TTTT
1 TATATATTAA-ATTGTTTT
*
13370542 TATATTTTAAATTGTTTT
1 TATATATTAAATTGTTTT
*
13370560 TACATAT
1 TATATAT
13370567 ATTGCAATGA
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
17 3 0.14
18 18 0.86
ACGTcount: A:0.33, C:0.02, G:0.02, T:0.63
Consensus pattern (18 bp):
TATATATTAAATTGTTTT
Found at i:13370614 original size:72 final size:71
Alignment explanation
Indices: 13370510--13370652 Score: 241
Period size: 72 Copynumber: 2.0 Consensus size: 71
13370500 TTCCGGAAAA
** *
13370510 GTTGATTTTACATATATATATTAATATTTTTTTATATTTTAAATTGTTTTTACATATATTGCAAT
1 GTTGATTTTACATATATATATTAATAAATTTTTATATTTTAAATTATTTTTACATATATTGCAAT
13370575 GATTTT
66 GATTTT
*
13370581 GTTGTTTTTACATAATATATATTAATAAATTTTTATATTTTAAATTATTTTTACATATATTGCAA
1 GTTGATTTTACAT-ATATATATTAATAAATTTTTATATTTTAAATTATTTTTACATATATTGCAA
13370646 TGATTTT
65 TGATTTT
13370653 ATAATTAAAT
Statistics
Matches: 67, Mismatches: 4, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
71 12 0.18
72 55 0.82
ACGTcount: A:0.33, C:0.04, G:0.06, T:0.57
Consensus pattern (71 bp):
GTTGATTTTACATATATATATTAATAAATTTTTATATTTTAAATTATTTTTACATATATTGCAAT
GATTTT
Found at i:13370772 original size:34 final size:32
Alignment explanation
Indices: 13370725--13370787 Score: 108
Period size: 34 Copynumber: 1.9 Consensus size: 32
13370715 TGAAAACAAC
13370725 TAATATCAATATTTGTAATTGTGTTAAAATAA
1 TAATATCAATATTTGTAATTGTGTTAAAATAA
13370757 TAATACTCAATTATTTGTAATTGTGTTAAAA
1 TAATA-TCAA-TATTTGTAATTGTGTTAAAA
13370788 ACAATAAAAA
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
32 5 0.17
33 4 0.14
34 20 0.69
ACGTcount: A:0.41, C:0.05, G:0.10, T:0.44
Consensus pattern (32 bp):
TAATATCAATATTTGTAATTGTGTTAAAATAA
Done.