Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr09 ID=Chr09-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 70713020
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 1142373 characters in sequence are not A, C, G, or T
File 33 of 226
Found at i:14463121 original size:19 final size:19
Alignment explanation
Indices: 14463061--14463123 Score: 83
Period size: 19 Copynumber: 3.4 Consensus size: 19
14463051 AAAATAGTTC
14463061 AATTTAATAACTCTATTTT
1 AATTTAATAACTCTATTTT
* * *
14463080 AATGTAATAAAT-TATTCT
1 AATTTAATAACTCTATTTT
*
14463098 CATTTAATAACTCTATTTT
1 AATTTAATAACTCTATTTT
14463117 AATTTAA
1 AATTTAA
14463124 AAAAATTAAA
Statistics
Matches: 35, Mismatches: 8, Indels: 2
0.78 0.18 0.04
Matches are distributed among these distances:
18 14 0.40
19 21 0.60
ACGTcount: A:0.40, C:0.10, G:0.02, T:0.49
Consensus pattern (19 bp):
AATTTAATAACTCTATTTT
Found at i:14463300 original size:82 final size:82
Alignment explanation
Indices: 14463204--14463368 Score: 321
Period size: 82 Copynumber: 2.0 Consensus size: 82
14463194 AAAAGGAAAA
14463204 AAATAACGGAAACATAAACTATTTTATCTATTTATAAATTTAATATATTCTTAATAGACTTATAA
1 AAATAACGGAAACATAAACTATTTTATCTATTTATAAATTTAATATATTCTTAATAGACTTATAA
14463269 CATAAACATGTTAGACT
66 CATAAACATGTTAGACT
*
14463286 AAATAATGGAAACATAAACTATTTTATCTATTTATAAATTTAATATATTCTTAATAGACTTATAA
1 AAATAACGGAAACATAAACTATTTTATCTATTTATAAATTTAATATATTCTTAATAGACTTATAA
14463351 CATAAACATGTTAGACT
66 CATAAACATGTTAGACT
14463368 A
1 A
14463369 TTTTAATTAA
Statistics
Matches: 82, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
82 82 1.00
ACGTcount: A:0.45, C:0.10, G:0.06, T:0.38
Consensus pattern (82 bp):
AAATAACGGAAACATAAACTATTTTATCTATTTATAAATTTAATATATTCTTAATAGACTTATAA
CATAAACATGTTAGACT
Found at i:14463459 original size:19 final size:19
Alignment explanation
Indices: 14463437--14463495 Score: 77
Period size: 19 Copynumber: 3.2 Consensus size: 19
14463427 ATTTTATATT
14463437 TTAAATTAAAATAGAGTTA
1 TTAAATTAAAATAGAGTTA
* *
14463456 TTAAA-TGAGA-AGAGTTTA
1 TTAAATTAAAATAGAG-TTA
14463474 TTAAATTAAAATAGAGTTA
1 TTAAATTAAAATAGAGTTA
14463493 TTA
1 TTA
14463496 CTTAATTAGA
Statistics
Matches: 33, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
17 4 0.12
18 11 0.33
19 14 0.42
20 4 0.12
ACGTcount: A:0.49, C:0.00, G:0.14, T:0.37
Consensus pattern (19 bp):
TTAAATTAAAATAGAGTTA
Found at i:14468207 original size:73 final size:73
Alignment explanation
Indices: 14468130--14468303 Score: 217
Period size: 73 Copynumber: 2.4 Consensus size: 73
14468120 TGTATAACGA
* * *
14468130 GAAGCTCATAAGAGCCATA-ATCGGGAAGCTCATGCGAGCCAATAACGAGTAGCTCCAAATAGCC
1 GAAGCTCATAAGAGCCATATATCGGGAAGCTCAAGCGAGCC-ATAACGAGAAGCTCCAAAGAGCC
14468194 ATTAATCAG
65 ATTAATCAG
* * * * **
14468203 GAAGCTC-TAGATAGCCATATATCGGGAAGTTCAAGCGAGCCATATCGGGAAGCTCCGGAGAGCC
1 GAAGCTCATA-AGAGCCATATATCGGGAAGCTCAAGCGAGCCATAACGAGAAGCTCCAAAGAGCC
14468267 ATTAATCAG
65 ATTAATCAG
*
14468276 GAAGCTCACGAAGAGCCATATATCGGGA
1 GAAGCTCA-TAAGAGCCATATATCGGGA
14468304 CACTCATAAG
Statistics
Matches: 86, Mismatches: 11, Indels: 7
0.83 0.11 0.07
Matches are distributed among these distances:
72 2 0.02
73 48 0.56
74 35 0.41
75 1 0.01
ACGTcount: A:0.34, C:0.22, G:0.25, T:0.18
Consensus pattern (73 bp):
GAAGCTCATAAGAGCCATATATCGGGAAGCTCAAGCGAGCCATAACGAGAAGCTCCAAAGAGCCA
TTAATCAG
Found at i:14468209 original size:25 final size:24
Alignment explanation
Indices: 14468130--14468295 Score: 74
Period size: 25 Copynumber: 6.8 Consensus size: 24
14468120 TGTATAACGA
*
14468130 GAAGCT-CATAAGAGCCATAATCGG
1 GAAGCTCCA-AAGAGCCATAATCAG
**
14468154 GAAGCT-CATGCGAGCCAATAA-C-G
1 GAAGCTCCA-AAGAGCC-ATAATCAG
* *
14468177 AGTAGCTCCAAATAGCCATTAATCAG
1 -GAAGCTCCAAAGAGCCA-TAATCAG
* * * *
14468203 GAAGCTCTAGATAGCCATATATCGG
1 GAAGCTCCAAAGAGCCATA-ATCAG
* * *
14468228 GAAG-TTCAAGCGAGCCAT-ATCGG
1 GAAGCTCCAA-AGAGCCATAATCAG
**
14468251 GAAGCTCCGGAGAGCCATTAATCAG
1 GAAGCTCCAAAGAGCCA-TAATCAG
*
14468276 GAAGCTCACGAAGAGCCATA
1 GAAGCTC-CAAAGAGCCATA
14468296 TATCGGGACA
Statistics
Matches: 109, Mismatches: 21, Indels: 23
0.71 0.14 0.15
Matches are distributed among these distances:
23 17 0.16
24 34 0.31
25 48 0.44
26 10 0.09
ACGTcount: A:0.35, C:0.23, G:0.25, T:0.17
Consensus pattern (24 bp):
GAAGCTCCAAAGAGCCATAATCAG
Found at i:14468219 original size:49 final size:48
Alignment explanation
Indices: 14468123--14468295 Score: 113
Period size: 48 Copynumber: 3.5 Consensus size: 48
14468113 TCTAGGTTGT
* *
14468123 ATAACGAGAAGCTCATAAGAGCCATAATCGGGAAGCTCATGCGAGCCA
1 ATAACGAGAAGCTCATAAGAGCCATAATCAGGAAGCTCATGAGAGCCA
* * *
14468171 ATAACGAGTAGCTCCA-AATAGCCATTAATCAGGAAGCTC-TAGATAGCCA
1 ATAACGAGAAGCT-CATAAGAGCCA-TAATCAGGAAGCTCAT-GAGAGCCA
* * * * * **
14468220 TATATCGGGAAGTTCA-AGCGAGCCAT-ATCGGGAAGCTCCGGAGAGCCA
1 -ATAACGAGAAGCTCATA-AGAGCCATAATCAGGAAGCTCATGAGAGCCA
* *
14468268 TTAATC-AGGAAGCTCACGAAGAGCCATA
1 ATAA-CGA-GAAGCTCA-TAAGAGCCATA
14468296 TATCGGGACA
Statistics
Matches: 95, Mismatches: 19, Indels: 20
0.71 0.14 0.15
Matches are distributed among these distances:
47 2 0.02
48 46 0.48
49 32 0.34
50 15 0.16
ACGTcount: A:0.36, C:0.23, G:0.24, T:0.17
Consensus pattern (48 bp):
ATAACGAGAAGCTCATAAGAGCCATAATCAGGAAGCTCATGAGAGCCA
Found at i:14468265 original size:23 final size:23
Alignment explanation
Indices: 14468221--14468296 Score: 71
Period size: 23 Copynumber: 3.2 Consensus size: 23
14468211 AGATAGCCAT
* ** *
14468221 ATATCGGGAAGTTCAAGCGAGCC
1 ATATCGGGAAGCTCCGGAGAGCC
14468244 ATATCGGGAAGCTCCGGAGAGCC
1 ATATCGGGAAGCTCCGGAGAGCC
* *
14468267 ATTAATCAGGAAGCTCACGAAGAGCC
1 A-T-ATCGGGAAGCTC-CGGAGAGCC
14468293 ATAT
1 ATAT
14468297 ATCGGGACAC
Statistics
Matches: 44, Mismatches: 6, Indels: 5
0.80 0.11 0.09
Matches are distributed among these distances:
23 20 0.45
24 3 0.07
25 12 0.27
26 9 0.20
ACGTcount: A:0.33, C:0.22, G:0.28, T:0.17
Consensus pattern (23 bp):
ATATCGGGAAGCTCCGGAGAGCC
Found at i:14468406 original size:25 final size:25
Alignment explanation
Indices: 14468377--14468440 Score: 85
Period size: 25 Copynumber: 2.6 Consensus size: 25
14468367 GAAGAGCTAT
* *
14468377 TAACGGGAAGCTCGTAATAACCATA
1 TAACGGGAAGCTCGCAAGAACCATA
*
14468402 TAACGAGAAGCTCGCAAGAACCATA
1 TAACGGGAAGCTCGCAAGAACCATA
14468427 TAACGAGG-AGCTCG
1 TAACG-GGAAGCTCG
14468441 AAAGGGCCAA
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
25 33 0.97
26 1 0.03
ACGTcount: A:0.39, C:0.22, G:0.23, T:0.16
Consensus pattern (25 bp):
TAACGGGAAGCTCGCAAGAACCATA
Found at i:14470035 original size:17 final size:17
Alignment explanation
Indices: 14470004--14470043 Score: 55
Period size: 17 Copynumber: 2.4 Consensus size: 17
14469994 TTTTATATTG
14470004 AATTGAATGTATGTGA-
1 AATTGAATGTATGTGAT
*
14470020 AATTGTAATTTATGTGAT
1 AATTG-AATGTATGTGAT
14470038 AATTGA
1 AATTGA
14470044 GTATTGGATA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
16 5 0.24
17 11 0.52
18 5 0.24
ACGTcount: A:0.38, C:0.00, G:0.20, T:0.42
Consensus pattern (17 bp):
AATTGAATGTATGTGAT
Found at i:14478955 original size:43 final size:42
Alignment explanation
Indices: 14478818--14478978 Score: 159
Period size: 43 Copynumber: 3.8 Consensus size: 42
14478808 ATCACATACA
* * * * *
14478818 ATGCCATATCCCAGATATGGTCTTACATGTTATCACATATCG
1 ATGCCATGTCCCAGACATGGTCTTACACGTAATCTCATATCG
* *
14478860 ATG-CATGTATCCCAAACAGGGTCTTACACG-AA--TCATATACG
1 ATGCCATG--TCCCAGACATGGTCTTACACGTAATCTCATAT-CG
*
14478901 GTGCCAATGTCCCAGACATGGTCTTACACGTAATCTCATATCG
1 ATGCC-ATGTCCCAGACATGGTCTTACACGTAATCTCATATCG
* *
14478944 ATGCCAATGTCCTAGACATGGTCTTACACGAAATC
1 ATGCC-ATGTCCCAGACATGGTCTTACACGTAATC
14478979 ACACCTCGAA
Statistics
Matches: 98, Mismatches: 13, Indels: 15
0.78 0.10 0.12
Matches are distributed among these distances:
40 5 0.05
41 26 0.27
42 7 0.07
43 54 0.55
44 6 0.06
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (42 bp):
ATGCCATGTCCCAGACATGGTCTTACACGTAATCTCATATCG
Found at i:14480382 original size:33 final size:33
Alignment explanation
Indices: 14480340--14480538 Score: 148
Period size: 33 Copynumber: 5.5 Consensus size: 33
14480330 ATCGGTGGAT
*
14480340 TCAGCACTTAGCAACCACCAATGAGACGGGGAA
1 TCAGCACTTAGCAACCACCAATGATACGGGGAA
* * *
14480373 TCAGCACTTAGCAACCCCTTTCACATTTAAGATATGGTGGGA
1 TCAGCACTTAGCAACCAC---CA-A--T--GATACGG-GGAA
*
14480415 TCAGCACTTAGCAACCACCAATGATTCGGGGAA
1 TCAGCACTTAGCAACCACCAATGATACGGGGAA
* *
14480448 TCAGCACTTAGCAACCCCCTTCACATTTAAGATACGGTAGAA
1 TCAGCACTTAGCAA-CCAC--CA-A--T--GATACGG-GGAA
14480490 TCAGCACTTAGCAACCACCAATGAGT-CGGGGAA
1 TCAGCACTTAGCAACCACCAATGA-TACGGGGAA
*
14480523 TCAACACTTAGCAACC
1 TCAGCACTTAGCAACC
14480539 CCTTTCACAT
Statistics
Matches: 133, Mismatches: 14, Indels: 38
0.72 0.08 0.21
Matches are distributed among these distances:
33 52 0.39
34 13 0.10
35 1 0.01
36 6 0.05
37 2 0.02
38 2 0.02
39 6 0.05
41 14 0.11
42 37 0.28
ACGTcount: A:0.33, C:0.28, G:0.19, T:0.20
Consensus pattern (33 bp):
TCAGCACTTAGCAACCACCAATGATACGGGGAA
Found at i:14480456 original size:75 final size:75
Alignment explanation
Indices: 14480332--14480580 Score: 417
Period size: 75 Copynumber: 3.3 Consensus size: 75
14480322 TTACCGTTAT
* *
14480332 CGGTGGATTCAGCACTTAGCAACCACCAATGAGACGGGGAATCAGCACTTAGCAACCCCTTTCAC
1 CGGTGGAATCAGCACTTAGCAACCACCAATGAGTCGGGGAATCAGCACTTAGCAACCCCTTTCAC
14480397 ATTTAAGATA
66 ATTTAAGATA
* * * *
14480407 TGGTGGGATCAGCACTTAGCAACCACCAATGATTCGGGGAATCAGCACTTAGCAACCCCCTTCAC
1 CGGTGGAATCAGCACTTAGCAACCACCAATGAGTCGGGGAATCAGCACTTAGCAACCCCTTTCAC
14480472 ATTTAAGATA
66 ATTTAAGATA
* *
14480482 CGGTAGAATCAGCACTTAGCAACCACCAATGAGTCGGGGAATCAACACTTAGCAACCCCTTTCAC
1 CGGTGGAATCAGCACTTAGCAACCACCAATGAGTCGGGGAATCAGCACTTAGCAACCCCTTTCAC
14480547 ATTTAAGATA
66 ATTTAAGATA
*
14480557 CGGTGGAATCAGCACTTAGAAACC
1 CGGTGGAATCAGCACTTAGCAACC
14480581 CCTTGGGGGA
Statistics
Matches: 160, Mismatches: 14, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
75 160 1.00
ACGTcount: A:0.33, C:0.27, G:0.20, T:0.21
Consensus pattern (75 bp):
CGGTGGAATCAGCACTTAGCAACCACCAATGAGTCGGGGAATCAGCACTTAGCAACCCCTTTCAC
ATTTAAGATA
Found at i:14480504 original size:42 final size:42
Alignment explanation
Indices: 14480444--14480582 Score: 161
Period size: 42 Copynumber: 3.5 Consensus size: 42
14480434 AATGATTCGG
14480444 GGAATCAGCACTTAGCAACCCCCTTCACATTTAAGATACGGT
1 GGAATCAGCACTTAGCAACCCCCTTCACATTTAAGATACGGT
* * *
14480486 AGAATCAGCACTTAGCAA-CCAC--CA-A--TGAG-T-CGG-
1 GGAATCAGCACTTAGCAACCCCCTTCACATTTAAGATACGGT
* *
14480519 GGAATCAACACTTAGCAACCCCTTTCACATTTAAGATACGGT
1 GGAATCAGCACTTAGCAACCCCCTTCACATTTAAGATACGGT
*
14480561 GGAATCAGCACTTAGAAACCCC
1 GGAATCAGCACTTAGCAACCCC
14480583 TTGGGGGAAT
Statistics
Matches: 78, Mismatches: 10, Indels: 18
0.74 0.09 0.17
Matches are distributed among these distances:
33 16 0.21
34 5 0.06
35 1 0.01
36 5 0.06
37 1 0.01
38 1 0.01
39 5 0.06
40 1 0.01
41 6 0.08
42 37 0.47
ACGTcount: A:0.34, C:0.28, G:0.17, T:0.21
Consensus pattern (42 bp):
GGAATCAGCACTTAGCAACCCCCTTCACATTTAAGATACGGT
Found at i:14484067 original size:26 final size:26
Alignment explanation
Indices: 14484037--14484109 Score: 76
Period size: 26 Copynumber: 2.8 Consensus size: 26
14484027 GCAACTCTTA
*
14484037 TGAGCGTCCC-ATTATATGGCTCTTCG
1 TGAGCGTCCCGATTA-AAGGCTCTTCG
* *
14484063 TGAGCTTCCCGATTAAAGGCTCTTTG
1 TGAGCGTCCCGATTAAAGGCTCTTCG
* * *
14484089 TGAGCTTCCTGATTAATGGCT
1 TGAGCGTCCCGATTAAAGGCT
14484110 TTCCGAAGCT
Statistics
Matches: 41, Mismatches: 5, Indels: 2
0.85 0.10 0.04
Matches are distributed among these distances:
26 37 0.90
27 4 0.10
ACGTcount: A:0.18, C:0.23, G:0.23, T:0.36
Consensus pattern (26 bp):
TGAGCGTCCCGATTAAAGGCTCTTCG
Found at i:14486320 original size:21 final size:21
Alignment explanation
Indices: 14486296--14486496 Score: 183
Period size: 21 Copynumber: 9.6 Consensus size: 21
14486286 GAAGCCCGAA
* *
14486296 AGCTGAACATAAGCTCATAAG
1 AGCTGAACAGAAACTCATAAG
*
14486317 AGCTAAACAGAAACTCATAAG
1 AGCTGAACAGAAACTCATAAG
*
14486338 AGCTAAACAGAAACTCATAAG
1 AGCTGAACAGAAACTCATAAG
* * * *
14486359 GGTTGAACAGAAGCTTATAAG
1 AGCTGAACAGAAACTCATAAG
*
14486380 AGCTGAATAGAAAC-CTATAAG
1 AGCTGAACAGAAACTC-ATAAG
14486401 AGCTGAACAGAAAC-CATAAG
1 AGCTGAACAGAAACTCATAAG
* * * *
14486421 GGTTGAATAGAAGCTCGA-AAG
1 AGCTGAACAGAAACTC-ATAAG
* *
14486442 AGTTGAACAGAAACTCATATG
1 AGCTGAACAGAAACTCATAAG
* * *
14486463 AGTTAAACAGAAACTCGTAAG
1 AGCTGAACAGAAACTCATAAG
* *
14486484 AGCTAAATAGAAA
1 AGCTGAACAGAAA
14486497 GTAAAACATG
Statistics
Matches: 149, Mismatches: 27, Indels: 8
0.81 0.15 0.04
Matches are distributed among these distances:
20 16 0.11
21 132 0.89
22 1 0.01
ACGTcount: A:0.47, C:0.15, G:0.20, T:0.18
Consensus pattern (21 bp):
AGCTGAACAGAAACTCATAAG
Found at i:14486454 original size:62 final size:64
Alignment explanation
Indices: 14486299--14486483 Score: 227
Period size: 63 Copynumber: 3.0 Consensus size: 64
14486289 GCCCGAAAGC
* * *
14486299 TGAACATAAGCTCATAAGAGCTAAACAGAAA-CTCATAAGAGCTAAACAGAAACTCATAAGGGT
1 TGAACAGAAGCTGATAAGAGCTGAACAGAAACCTCATAAGAGCTAAACAGAAACTCATAAGGGT
* * *
14486362 TGAACAGAAGCTTATAAGAGCTGAATAGAAACCT-ATAAGAGCTGAACAGAAAC-CATAAGGGT
1 TGAACAGAAGCTGATAAGAGCTGAACAGAAACCTCATAAGAGCTAAACAGAAACTCATAAGGGT
* * * * *
14486424 TGAATAGAAGCTCGA-AAGAGTTGAACAGAAA-CTCATATGAGTTAAACAGAAACTCGTAAG
1 TGAACAGAAGCT-GATAAGAGCTGAACAGAAACCTCATAAGAGCTAAACAGAAACTCATAAG
14486484 AGCTAAATAG
Statistics
Matches: 105, Mismatches: 13, Indels: 8
0.83 0.10 0.06
Matches are distributed among these distances:
61 2 0.02
62 50 0.48
63 51 0.49
64 2 0.02
ACGTcount: A:0.46, C:0.15, G:0.21, T:0.18
Consensus pattern (64 bp):
TGAACAGAAGCTGATAAGAGCTGAACAGAAACCTCATAAGAGCTAAACAGAAACTCATAAGGGT
Found at i:14487631 original size:9 final size:9
Alignment explanation
Indices: 14487614--14487650 Score: 65
Period size: 9 Copynumber: 4.1 Consensus size: 9
14487604 TGAGTTTTCG
14487614 AATTCGAAT
1 AATTCGAAT
*
14487623 AACTCGAAT
1 AATTCGAAT
14487632 AATTCGAAT
1 AATTCGAAT
14487641 AATTCGAAT
1 AATTCGAAT
14487650 A
1 A
14487651 TCAAACTATA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
9 26 1.00
ACGTcount: A:0.46, C:0.14, G:0.11, T:0.30
Consensus pattern (9 bp):
AATTCGAAT
Found at i:14488687 original size:5 final size:5
Alignment explanation
Indices: 14488677--14488704 Score: 56
Period size: 5 Copynumber: 5.6 Consensus size: 5
14488667 GAAAATTTTT
14488677 GATTC GATTC GATTC GATTC GATTC GAT
1 GATTC GATTC GATTC GATTC GATTC GAT
14488705 CGAATGCTCA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.21, C:0.18, G:0.21, T:0.39
Consensus pattern (5 bp):
GATTC
Found at i:14499075 original size:44 final size:44
Alignment explanation
Indices: 14498999--14499082 Score: 116
Period size: 44 Copynumber: 1.9 Consensus size: 44
14498989 TAGAGTGTGG
* *
14498999 AATGCCATGTTATCTTAAGAAAAACGGTATCAAATTTATCACGA
1 AATGCCATATTATCTTAAGAAAAACGGTATCAAAATTATCACGA
* *
14499043 AATGTCATATTAT-TTAAGGAAAAATGGTATCAAAATTATC
1 AATGCCATATTATCTTAA-GAAAAACGGTATCAAAATTATC
14499083 GCTTGATCCA
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
43 4 0.11
44 31 0.89
ACGTcount: A:0.43, C:0.12, G:0.13, T:0.32
Consensus pattern (44 bp):
AATGCCATATTATCTTAAGAAAAACGGTATCAAAATTATCACGA
Found at i:14519071 original size:26 final size:26
Alignment explanation
Indices: 14518996--14519077 Score: 130
Period size: 26 Copynumber: 3.2 Consensus size: 26
14518986 GCACACCTTA
**
14518996 GCTCTTT-TGAGCTTCCTGATTAAAA
1 GCTCTTTGTGAGCTTCCTGATTAATG
*
14519021 GCTTTTTGTGAGCTTCCTGATTAATG
1 GCTCTTTGTGAGCTTCCTGATTAATG
14519047 GCTCTTTGTGAGCTTCCTGATTAATG
1 GCTCTTTGTGAGCTTCCTGATTAATG
14519073 GCTCT
1 GCTCT
14519078 CCGGAGCTTC
Statistics
Matches: 52, Mismatches: 4, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
25 6 0.12
26 46 0.88
ACGTcount: A:0.17, C:0.20, G:0.21, T:0.43
Consensus pattern (26 bp):
GCTCTTTGTGAGCTTCCTGATTAATG
Found at i:14519133 original size:23 final size:23
Alignment explanation
Indices: 14519084--14519140 Score: 60
Period size: 23 Copynumber: 2.5 Consensus size: 23
14519074 CTCTCCGGAG
* * *
14519084 CTTCCCGATACGACTCTCTAGAG
1 CTTCCCGATATGACTCGCTAGAA
* *
14519107 CTTCCCGATATGGCTCGCTTGAA
1 CTTCCCGATATGACTCGCTAGAA
*
14519130 CTTCCTGATAT
1 CTTCCCGATAT
14519141 AGGGCTATCT
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
23 28 1.00
ACGTcount: A:0.19, C:0.32, G:0.18, T:0.32
Consensus pattern (23 bp):
CTTCCCGATATGACTCGCTAGAA
Found at i:14521921 original size:15 final size:15
Alignment explanation
Indices: 14521885--14521924 Score: 62
Period size: 15 Copynumber: 2.7 Consensus size: 15
14521875 CAAAACTTAG
* *
14521885 ATTATTATTACTATT
1 ATTATTGTTACTATC
14521900 ATTATTGTTACTATC
1 ATTATTGTTACTATC
14521915 ATTATTGTTA
1 ATTATTGTTA
14521925 TTTATATTAG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
15 23 1.00
ACGTcount: A:0.30, C:0.07, G:0.05, T:0.57
Consensus pattern (15 bp):
ATTATTGTTACTATC
Found at i:14525997 original size:7 final size:7
Alignment explanation
Indices: 14525987--14526011 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
14525977 AAAAAAAGTA
14525987 AAAATAT
1 AAAATAT
14525994 AAAATAT
1 AAAATAT
14526001 AAAATAT
1 AAAATAT
14526008 AAAA
1 AAAA
14526012 AAATAATATT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (7 bp):
AAAATAT
Found at i:14526010 original size:22 final size:21
Alignment explanation
Indices: 14525985--14526025 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 21
14525975 CAAAAAAAAG
*
14525985 TAAAAATATAAAATATAAAATA
1 TAAAAAAATAAAAT-TAAAATA
*
14526007 TAAAAAAATAATATTAAAA
1 TAAAAAAATAAAATTAAAA
14526026 GCTAAAATAT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 5 0.29
22 12 0.71
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (21 bp):
TAAAAAAATAAAATTAAAATA
Found at i:14549078 original size:31 final size:31
Alignment explanation
Indices: 14548976--14549084 Score: 114
Period size: 31 Copynumber: 3.4 Consensus size: 31
14548966 TGAAATATAA
14548976 ATTTTAAATATTTTTAAGTAATAAATATTAATT
1 ATTTTAAATA--TTTAAGTAATAAATATTAATT
* * *
14549009 ATTTATAAA-ATTTAATTAGA-ATATATAAACTAT
1 ATTT-TAAATATTTAAGTA-ATAAATATTAA-T-T
14549042 ATTTTAAATATTTAAGTAATAAATATTAATT
1 ATTTTAAATATTTAAGTAATAAATATTAATT
*
14549073 ATTTTAGATATT
1 ATTTTAAATATT
14549085 AACACATTTG
Statistics
Matches: 63, Mismatches: 7, Indels: 14
0.75 0.08 0.17
Matches are distributed among these distances:
31 26 0.41
32 8 0.13
33 25 0.40
34 4 0.06
ACGTcount: A:0.47, C:0.01, G:0.04, T:0.49
Consensus pattern (31 bp):
ATTTTAAATATTTAAGTAATAAATATTAATT
Found at i:14553785 original size:2 final size:2
Alignment explanation
Indices: 14553778--14553805 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
14553768 CTAATGTACC
14553778 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
14553806 TTGTTATTTT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:14560648 original size:22 final size:22
Alignment explanation
Indices: 14560621--14560662 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
14560611 ATTATATATA
14560621 TATTTAATATGT-TATATTTTAT
1 TATTTAATATGTAT-TATTTTAT
*
14560643 TATTTATTATGTATTATTTT
1 TATTTAATATGTATTATTTT
14560663 TAAACACATA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
22 17 0.94
23 1 0.06
ACGTcount: A:0.29, C:0.00, G:0.05, T:0.67
Consensus pattern (22 bp):
TATTTAATATGTATTATTTTAT
Found at i:14560649 original size:14 final size:15
Alignment explanation
Indices: 14560610--14560661 Score: 54
Period size: 14 Copynumber: 3.5 Consensus size: 15
14560600 TTTATTTTAA
*
14560610 TATTATATATATATT
1 TATTATTTATATATT
*
14560625 TAATATGTTATAT-TT
1 TATTAT-TTATATATT
*
14560640 TATTATTTAT-TATG
1 TATTATTTATATATT
14560654 TATTATTT
1 TATTATTT
14560662 TTAAACACAT
Statistics
Matches: 31, Mismatches: 4, Indels: 5
0.77 0.10 0.12
Matches are distributed among these distances:
13 1 0.03
14 13 0.42
15 12 0.39
16 5 0.16
ACGTcount: A:0.33, C:0.00, G:0.04, T:0.63
Consensus pattern (15 bp):
TATTATTTATATATT
Found at i:14561614 original size:30 final size:31
Alignment explanation
Indices: 14561573--14561652 Score: 121
Period size: 30 Copynumber: 2.7 Consensus size: 31
14561563 AAAAAAATAG
*
14561573 AAAATTAAAAAAGTATTTTTAAAATATTTTT
1 AAAAATAAAAAAGTATTTTTAAAATATTTTT
14561604 -AAAATAAAAAAGTA-TTTTAAAATATTTTT
1 AAAAATAAAAAAGTATTTTTAAAATATTTTT
*
14561633 AAAAATAAAAAA-TATATTTA
1 AAAAATAAAAAAGTATTTTTA
14561653 TTATATTCGG
Statistics
Matches: 45, Mismatches: 2, Indels: 5
0.87 0.04 0.10
Matches are distributed among these distances:
29 17 0.38
30 28 0.62
ACGTcount: A:0.57, C:0.00, G:0.03, T:0.40
Consensus pattern (31 bp):
AAAAATAAAAAAGTATTTTTAAAATATTTTT
Found at i:14561621 original size:19 final size:17
Alignment explanation
Indices: 14561593--14561627 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 17
14561583 AAGTATTTTT
14561593 AAAATATTTTTAAAATAA
1 AAAATA-TTTTAAAATAA
14561611 AAAAGTATTTTAAAATA
1 AAAA-TATTTTAAAATA
14561628 TTTTTAAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 14 0.88
19 2 0.12
ACGTcount: A:0.60, C:0.00, G:0.03, T:0.37
Consensus pattern (17 bp):
AAAATATTTTAAAATAA
Found at i:14561638 original size:12 final size:11
Alignment explanation
Indices: 14561581--14561636 Score: 50
Period size: 11 Copynumber: 5.4 Consensus size: 11
14561571 AGAAAATTAA
14561581 AAAAGTATTTTT
1 AAAA-TATTTTT
14561593 AAAATATTTTT
1 AAAATATTTTT
*
14561604 AAAATA----A
1 AAAATATTTTT
14561611 AAAAGTA-TTTT
1 AAAA-TATTTTT
14561622 AAAATATTTTT
1 AAAATATTTTT
14561633 AAAA
1 AAAA
14561637 ATAAAAAATA
Statistics
Matches: 37, Mismatches: 2, Indels: 11
0.74 0.04 0.22
Matches are distributed among these distances:
7 4 0.11
8 2 0.05
10 2 0.05
11 25 0.68
12 4 0.11
ACGTcount: A:0.54, C:0.00, G:0.04, T:0.43
Consensus pattern (11 bp):
AAAATATTTTT
Found at i:14562143 original size:2 final size:2
Alignment explanation
Indices: 14562136--14562163 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
14562126 TGAAAATCAC
14562136 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
14562164 TTGGCAATGG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:14562507 original size:16 final size:17
Alignment explanation
Indices: 14562480--14562511 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
14562470 GAAACAACAT
14562480 AATTAAACAATTAAATA
1 AATTAAACAATTAAATA
14562497 AATTAAA-AATTAAAT
1 AATTAAACAATTAAAT
14562512 TGGAAATTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 8 0.53
17 7 0.47
ACGTcount: A:0.66, C:0.03, G:0.00, T:0.31
Consensus pattern (17 bp):
AATTAAACAATTAAATA
Found at i:14563911 original size:27 final size:27
Alignment explanation
Indices: 14563858--14563911 Score: 65
Period size: 27 Copynumber: 2.0 Consensus size: 27
14563848 CATTTAATTT
**
14563858 TTATTAATTATAAAAATATTTTTAATA
1 TTATTAATTATAAAAATATTTAAAATA
*
14563885 TTATTAATTGTTAAAAA-ATTTAAAATA
1 TTATTAATT-ATAAAAATATTTAAAATA
14563912 AAATCATACT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
27 17 0.74
28 6 0.26
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (27 bp):
TTATTAATTATAAAAATATTTAAAATA
Found at i:14565441 original size:3 final size:3
Alignment explanation
Indices: 14565425--14565466 Score: 50
Period size: 3 Copynumber: 14.3 Consensus size: 3
14565415 GGAAGAAGGT
* * *
14565425 GAA GGA GAA G-A GAA GAA GAA GAA GAA AAA GAA GGA GAA GAA G
1 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA G
14565467 GGACTGAAAG
Statistics
Matches: 32, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
2 2 0.06
3 30 0.94
ACGTcount: A:0.62, C:0.00, G:0.38, T:0.00
Consensus pattern (3 bp):
GAA
Found at i:14565665 original size:6 final size:6
Alignment explanation
Indices: 14565649--14565684 Score: 63
Period size: 6 Copynumber: 6.0 Consensus size: 6
14565639 AGGCCAGTAG
*
14565649 CCCAGC TCCAGC CCCAGC CCCAGC CCCAGC CCCAGC
1 CCCAGC CCCAGC CCCAGC CCCAGC CCCAGC CCCAGC
14565685 AGCTGAGCCC
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
6 28 1.00
ACGTcount: A:0.17, C:0.64, G:0.17, T:0.03
Consensus pattern (6 bp):
CCCAGC
Found at i:14576641 original size:17 final size:17
Alignment explanation
Indices: 14576619--14576652 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
14576609 AATGGTTTTG
14576619 GGATGCAAACAATGACA
1 GGATGCAAACAATGACA
14576636 GGATGCAAACAATGACA
1 GGATGCAAACAATGACA
14576653 ATGTTACTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.47, C:0.18, G:0.24, T:0.12
Consensus pattern (17 bp):
GGATGCAAACAATGACA
Found at i:14590605 original size:18 final size:18
Alignment explanation
Indices: 14590582--14590622 Score: 55
Period size: 18 Copynumber: 2.3 Consensus size: 18
14590572 AATGAGCATA
* *
14590582 AATTTTGTATTTCAATTT
1 AATTTTATATTTCAATAT
*
14590600 AATTTTATATTTTAATAT
1 AATTTTATATTTCAATAT
14590618 AATTT
1 AATTT
14590623 ATTTCGTCTA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.34, C:0.02, G:0.02, T:0.61
Consensus pattern (18 bp):
AATTTTATATTTCAATAT
Found at i:14613124 original size:26 final size:26
Alignment explanation
Indices: 14613062--14613118 Score: 73
Period size: 26 Copynumber: 2.2 Consensus size: 26
14613052 GCACACAACA
* *
14613062 GCTCTT-ATGAGCGTCCCGTTATATG
1 GCTCTTCATGAGCTTCCCGTTATAAG
14613087 GCTCTTCATGAGCTTCCCGATTA-AAG
1 GCTCTTCATGAGCTTCCCG-TTATAAG
14613113 GCTCTT
1 GCTCTT
14613119 TGTGAGATTC
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
25 6 0.21
26 19 0.68
27 3 0.11
ACGTcount: A:0.18, C:0.26, G:0.21, T:0.35
Consensus pattern (26 bp):
GCTCTTCATGAGCTTCCCGTTATAAG
Found at i:14617889 original size:42 final size:42
Alignment explanation
Indices: 14617825--14617929 Score: 120
Period size: 42 Copynumber: 2.5 Consensus size: 42
14617815 TCGTGTTTAT
* * * * *
14617825 TTTCCATTTAGTTCTCACGAGCTTCTGTTTAACTCATATGAG
1 TTTCCATTCAGCTCTTATGAGCTTCTGTTTAACCCATATGAG
* * * *
14617867 TTTCCGTTCAGCTCTTTTGAGCTTCTGTTTAACCCTTATGGG
1 TTTCCATTCAGCTCTTATGAGCTTCTGTTTAACCCATATGAG
*
14617909 TTTCCATTTAGCTCTTATGAG
1 TTTCCATTCAGCTCTTATGAG
14617930 TTTCCGTTCA
Statistics
Matches: 51, Mismatches: 12, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
42 51 1.00
ACGTcount: A:0.17, C:0.22, G:0.16, T:0.45
Consensus pattern (42 bp):
TTTCCATTCAGCTCTTATGAGCTTCTGTTTAACCCATATGAG
Found at i:14617961 original size:42 final size:42
Alignment explanation
Indices: 14617866--14617967 Score: 114
Period size: 42 Copynumber: 2.4 Consensus size: 42
14617856 ACTCATATGA
* * * * *
14617866 GTTTCCGTTCAGCTCTTTTGAGCTTCTGTTTAACCCTTATGG
1 GTTTCCGTTTAGCTCTTATGAGCTTCCGTTCAACCCTTACGG
* * *
14617908 GTTTCCATTTAGCTCTTATGAGTTTCCGTTCAACCTTTACGG
1 GTTTCCGTTTAGCTCTTATGAGCTTCCGTTCAACCCTTACGG
* *
14617950 GTTTCTGTTTAGCACTTA
1 GTTTCCGTTTAGCTCTTA
14617968 CGTGCTTCTG
Statistics
Matches: 49, Mismatches: 11, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
42 49 1.00
ACGTcount: A:0.15, C:0.23, G:0.18, T:0.45
Consensus pattern (42 bp):
GTTTCCGTTTAGCTCTTATGAGCTTCCGTTCAACCCTTACGG
Found at i:14617968 original size:21 final size:21
Alignment explanation
Indices: 14617944--14617996 Score: 65
Period size: 21 Copynumber: 2.6 Consensus size: 21
14617934 CGTTCAACCT
*
14617944 TTACGGGTTTCTGTTTAGCAC
1 TTACGGGCTTCTGTTTAGCAC
*
14617965 TTACGTGCTTCTGTTTAGC-C
1 TTACGGGCTTCTGTTTAGCAC
*
14617985 TT-CAGGCTTCTG
1 TTACGGGCTTCTG
14617997 AAAATGATGC
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
19 8 0.29
20 3 0.11
21 17 0.61
ACGTcount: A:0.11, C:0.23, G:0.23, T:0.43
Consensus pattern (21 bp):
TTACGGGCTTCTGTTTAGCAC
Found at i:14617982 original size:63 final size:63
Alignment explanation
Indices: 14617845--14617983 Score: 145
Period size: 63 Copynumber: 2.2 Consensus size: 63
14617835 GTTCTCACGA
* * * * *
14617845 GCTTCTGTTTAACTCATATGAGTTTCCGTTCAGCTCTTTTGAGCTTCTGTTTAACCCTTATGG
1 GCTTCTGTTTAGCTCATATGAGTTTCCGTTCAACTCTTTCGAGCTTCTGTTTAACACTTACGG
* ** * * * * *
14617908 GTTTCCATTTAGCTCTTATGAGTTTCCGTTCAAC-CTTTACGGGTTTCTGTTTAGCACTTACGT
1 GCTTCTGTTTAGCTCATATGAGTTTCCGTTCAACTCTTT-CGAGCTTCTGTTTAACACTTACGG
14617971 GCTTCTGTTTAGC
1 GCTTCTGTTTAGC
14617984 CTTCAGGCTT
Statistics
Matches: 59, Mismatches: 16, Indels: 2
0.77 0.21 0.03
Matches are distributed among these distances:
62 4 0.07
63 55 0.93
ACGTcount: A:0.15, C:0.22, G:0.18, T:0.45
Consensus pattern (63 bp):
GCTTCTGTTTAGCTCATATGAGTTTCCGTTCAACTCTTTCGAGCTTCTGTTTAACACTTACGG
Found at i:14622232 original size:67 final size:67
Alignment explanation
Indices: 14622123--14622430 Score: 287
Period size: 67 Copynumber: 4.6 Consensus size: 67
14622113 ATGGGCTGTA
* * * * *
14622123 ATGGGGTATAATGTGCAAGACCATAGCTCGACTATGGTAACATAAAGAGTCCATTAGGACATTAA
1 ATGGGGTATAATGTGTAAGACCATAGCTCGATTATGGCAACATAGAGAGTCCACTAGGACATTAA
14622188 ACT
66 A-T
* * ** *
14622191 -TGGGGTATAATATGTAAGTCCGGAGCTCGATTATGGCAACATAGAGAGTCCGCTAGGACATTAA
1 ATGGGGTATAATGTGTAAGACCATAGCTCGATTATGGCAACATAGAGAGTCCACTAGGACATTAA
14622255 AT
66 AT
* * * ** *
14622257 ATAGAGTATAATGTGTAAGACCTTAGCTCGATTATGGCAACATAGAGAG-CCTGTCAAGACATTA
1 ATGGGGTATAATGTGTAAGACCATAGCTCGATTATGGCAACATAGAGAGTCCACT-AGGACATTA
*
14622321 AAC
65 AAT
* * * * * * * * * *
14622324 ATGGGCTATGATGTGTAAGACCACAGCTCAACTAAGGCAACATTGAGAGTCTACCAGAACATTAA
1 ATGGGGTATAATGTGTAAGACCATAGCTCGATTATGGCAACATAGAGAGTCCACTAGGACATTAA
*
14622389 AC
66 AT
* * * * *
14622391 ATTGGGTATGATTTGTAAGACTATAGCTCGACTATGGCAA
1 ATGGGGTATAATGTGTAAGACCATAGCTCGATTATGGCAA
14622431 AATATGAAGT
Statistics
Matches: 194, Mismatches: 43, Indels: 7
0.80 0.18 0.03
Matches are distributed among these distances:
66 4 0.02
67 189 0.97
68 1 0.01
ACGTcount: A:0.35, C:0.17, G:0.23, T:0.25
Consensus pattern (67 bp):
ATGGGGTATAATGTGTAAGACCATAGCTCGATTATGGCAACATAGAGAGTCCACTAGGACATTAA
AT
Found at i:14622372 original size:134 final size:134
Alignment explanation
Indices: 14622128--14622430 Score: 324
Period size: 134 Copynumber: 2.3 Consensus size: 134
14622118 CTGTAATGGG
* * * * *
14622128 GTATAATGTGCAAGACCATAGCTCGACTATGGTAACATAAAGAGTCCATTAGGACATTAAACTTG
1 GTATAATGTGTAAGACCTTAGCTCGACTATGGCAACATAAAGAGTCCATTAAGACATTAAACATG
* * ** * * * * * * *
14622193 GGGTATAATATGTAAGTCCGGAGCTCGATTATGGCAACATAGAGAGTCCGCTAGGACATTAAATA
66 GGCTATAATATGTAAGACCACAGCTCAACTAAGGCAACATAGAGAGTCCACCAGAACATTAAACA
14622258 TAGA
131 TAGA
* *
14622262 GTATAATGTGTAAGACCTTAGCTCGATTATGGCAACATAGAGAG-CC-TGTCAAGACATTAAACA
1 GTATAATGTGTAAGACCTTAGCTCGACTATGGCAACATAAAGAGTCCAT-T-AAGACATTAAACA
* * * *
14622325 TGGGCTATGATGTGTAAGACCACAGCTCAACTAAGGCAACATTGAGAGTCTACCAGAACATTAAA
64 TGGGCTATAATATGTAAGACCACAGCTCAACTAAGGCAACATAGAGAGTCCACCAGAACATTAAA
* *
14622390 CATTGG
129 CATAGA
* *
14622396 GTATGATTTGTAAGA-CTATAGCTCGACTATGGCAA
1 GTATAATGTGTAAGACCT-TAGCTCGACTATGGCAA
14622431 AATATGAAGT
Statistics
Matches: 139, Mismatches: 27, Indels: 6
0.81 0.16 0.03
Matches are distributed among these distances:
132 1 0.01
133 5 0.04
134 133 0.96
ACGTcount: A:0.35, C:0.17, G:0.22, T:0.25
Consensus pattern (134 bp):
GTATAATGTGTAAGACCTTAGCTCGACTATGGCAACATAAAGAGTCCATTAAGACATTAAACATG
GGCTATAATATGTAAGACCACAGCTCAACTAAGGCAACATAGAGAGTCCACCAGAACATTAAACA
TAGA
Found at i:14622468 original size:27 final size:27
Alignment explanation
Indices: 14622438--14622497 Score: 75
Period size: 27 Copynumber: 2.2 Consensus size: 27
14622428 CAAAATATGA
* **
14622438 AGTCCGTTGGGACAATAAATGTGGGAT
1 AGTCCGCTGGGACAATAAAAATGGGAT
* *
14622465 AGTCCACTGGGACAATAAAAATGGGGT
1 AGTCCGCTGGGACAATAAAAATGGGAT
14622492 AGTCCG
1 AGTCCG
14622498 ACAAGATAAT
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.32, C:0.15, G:0.32, T:0.22
Consensus pattern (27 bp):
AGTCCGCTGGGACAATAAAAATGGGAT
Found at i:14636571 original size:10 final size:10
Alignment explanation
Indices: 14636538--14636601 Score: 67
Period size: 10 Copynumber: 6.3 Consensus size: 10
14636528 AAGAATAAAT
14636538 AAAAAGAAAG
1 AAAAAGAAAG
*
14636548 AAAAAAAAACG
1 AAAAAGAAA-G
*
14636559 AAACAGAAAG
1 AAAAAGAAAG
14636569 AAAAAGAAAG
1 AAAAAGAAAG
* *
14636579 AAAGA-AAAT
1 AAAAAGAAAG
14636588 AAAAAGGAAAG
1 AAAAA-GAAAG
14636599 AAA
1 AAA
14636602 GGAAGGAGAA
Statistics
Matches: 43, Mismatches: 8, Indels: 5
0.77 0.14 0.09
Matches are distributed among these distances:
9 7 0.16
10 22 0.51
11 14 0.33
ACGTcount: A:0.78, C:0.03, G:0.17, T:0.02
Consensus pattern (10 bp):
AAAAAGAAAG
Found at i:14636581 original size:20 final size:20
Alignment explanation
Indices: 14636542--14636601 Score: 68
Period size: 21 Copynumber: 3.0 Consensus size: 20
14636532 ATAAATAAAA
*
14636542 AGAAAGAAAAAAAAACGAAAC
1 AGAAAGAAAAAGAAA-GAAAC
*
14636563 AGAAAGAAAAAGAAAGAAAG
1 AGAAAGAAAAAGAAAGAAAC
*
14636583 A-AAATAAAAAGGAAAGAAA
1 AGAAAGAAAAA-GAAAGAAA
14636602 GGAAGGAGAA
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
19 8 0.23
20 13 0.37
21 14 0.40
ACGTcount: A:0.77, C:0.03, G:0.18, T:0.02
Consensus pattern (20 bp):
AGAAAGAAAAAGAAAGAAAC
Found at i:14636602 original size:20 final size:18
Alignment explanation
Indices: 14636527--14636602 Score: 68
Period size: 17 Copynumber: 4.2 Consensus size: 18
14636517 ATTATAAAAT
* *
14636527 AAAGAATAAATAA-AAAG
1 AAAGAAAAAAAAAGAAAG
14636544 AAAGAAAAAAAAACG-AA-
1 AAAGAAAAAAAAA-GAAAG
* *
14636561 ACAGAAAGAAAAAGAAAG
1 AAAGAAAAAAAAAGAAAG
14636579 AAAGAAAATAAAAAGGAAAG
1 AAAGAAAA-AAAAA-GAAAG
14636599 AAAG
1 AAAG
14636603 GAAGGAGAAA
Statistics
Matches: 47, Mismatches: 6, Indels: 9
0.76 0.10 0.15
Matches are distributed among these distances:
16 1 0.02
17 24 0.51
18 8 0.17
19 5 0.11
20 9 0.19
ACGTcount: A:0.76, C:0.03, G:0.17, T:0.04
Consensus pattern (18 bp):
AAAGAAAAAAAAAGAAAG
Found at i:14637312 original size:2 final size:2
Alignment explanation
Indices: 14637305--14637344 Score: 80
Period size: 2 Copynumber: 20.0 Consensus size: 2
14637295 GATTGAATTG
14637305 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
14637345 TATGATTGTA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:14637572 original size:41 final size:40
Alignment explanation
Indices: 14637527--14637640 Score: 108
Period size: 38 Copynumber: 2.9 Consensus size: 40
14637517 CTTCGAGTCG
*
14637527 ATGAGACACTGGGTGTCAAATTATTACTTCGAATTAATTCA
1 ATGAGACACTGGGTGTCAAATTATTACTTCGAATTAACT-A
* * * ** * *
14637568 ATGAGGCACTGAGTG-CCAA-T-TTACTTCGGTTTAGCTG
1 ATGAGACACTGGGTGTCAAATTATTACTTCGAATTAACTA
* *
14637605 ATGAGAAACTGGGTGTCAAGTTATTACTTCGAATTA
1 ATGAGACACTGGGTGTCAAATTATTACTTCGAATTA
14637641 TCCGATTAGG
Statistics
Matches: 55, Mismatches: 15, Indels: 7
0.71 0.19 0.09
Matches are distributed among these distances:
37 12 0.22
38 14 0.25
39 2 0.04
40 14 0.25
41 13 0.24
ACGTcount: A:0.30, C:0.15, G:0.22, T:0.33
Consensus pattern (40 bp):
ATGAGACACTGGGTGTCAAATTATTACTTCGAATTAACTA
Found at i:14637656 original size:40 final size:39
Alignment explanation
Indices: 14637525--14637659 Score: 121
Period size: 40 Copynumber: 3.4 Consensus size: 39
14637515 GACTTCGAGT
* *
14637525 CGATGAGACACTGGGTGTCAAATTATTACTTCGAATTAATT
1 CGATGAGGCACTGGGTGTC-AATTATTACTTCGAATT-ATC
* * * ** *
14637566 CAATGAGGCACTGAGTGCCAA-T-TTACTTCGGTTTAGC
1 CGATGAGGCACTGGGTGTCAATTATTACTTCGAATTATC
* **
14637603 TGATGAGAAACTGGGTGTCAAGTTATTACTTCGAATTATC
1 CGATGAGGCACTGGGTGTCAA-TTATTACTTCGAATTATC
*
14637643 CGATTAGGCACTGGGTG
1 CGATGAGGCACTGGGTG
14637660 CCAAACTGGT
Statistics
Matches: 70, Mismatches: 21, Indels: 7
0.71 0.21 0.07
Matches are distributed among these distances:
37 16 0.23
38 10 0.14
39 2 0.03
40 27 0.39
41 15 0.21
ACGTcount: A:0.27, C:0.16, G:0.24, T:0.32
Consensus pattern (39 bp):
CGATGAGGCACTGGGTGTCAATTATTACTTCGAATTATC
Found at i:14638900 original size:19 final size:19
Alignment explanation
Indices: 14638878--14638962 Score: 66
Period size: 19 Copynumber: 4.3 Consensus size: 19
14638868 AAAATTAAAA
*
14638878 AAAAAGAAAAAAA-TATTTT
1 AAAAACAAAAAAATTA-TTT
**
14638897 AAAAATCATTAAAATTATTT
1 AAAAA-CAAAAAAATTATTT
*
14638917 AAAAATAAAAAAATTATTT
1 AAAAACAAAAAAATTATTT
14638936 AAAAA-AATCATTAAAATTATTT
1 AAAAACAA--A--AAAATTATTT
14638958 AAAAA
1 AAAAA
14638963 TTATAACTAA
Statistics
Matches: 54, Mismatches: 6, Indels: 9
0.78 0.09 0.13
Matches are distributed among these distances:
18 2 0.04
19 21 0.39
20 14 0.26
21 2 0.04
22 15 0.28
ACGTcount: A:0.65, C:0.02, G:0.01, T:0.32
Consensus pattern (19 bp):
AAAAACAAAAAAATTATTT
Found at i:14638910 original size:22 final size:20
Alignment explanation
Indices: 14638886--14638963 Score: 79
Period size: 20 Copynumber: 3.8 Consensus size: 20
14638876 AAAAAAAGAA
14638886 AAAAATATTTTAAAAATCATT
1 AAAAATA-TTTAAAAATCATT
* *
14638907 AAAATTATTTAAAAAT-A-A
1 AAAAATATTTAAAAATCATT
14638925 AAAAATTATTTAAAAAAATCATT
1 AAAAA-TATTT--AAAAATCATT
*
14638948 AAAATTATTTAAAAAT
1 AAAAATATTTAAAAAT
14638964 TATAACTAAA
Statistics
Matches: 47, Mismatches: 5, Indels: 11
0.75 0.08 0.17
Matches are distributed among these distances:
18 4 0.09
19 6 0.13
20 15 0.32
21 12 0.26
22 6 0.13
23 4 0.09
ACGTcount: A:0.62, C:0.03, G:0.00, T:0.36
Consensus pattern (20 bp):
AAAAATATTTAAAAATCATT
Found at i:14638911 original size:39 final size:41
Alignment explanation
Indices: 14638868--14638954 Score: 115
Period size: 39 Copynumber: 2.2 Consensus size: 41
14638858 TTAAATTTTA
*
14638868 AAAATTAAAAAAAAAGAAAAAAA-TATTT-TAAAAATCATT
1 AAAATTAAAAAAAAAGAAAAAAATTATTTAAAAAAATCATT
*** *
14638907 AAAATTATTTAAAAATAAAAAAATTATTTAAAAAAATCATT
1 AAAATTAAAAAAAAAGAAAAAAATTATTTAAAAAAATCATT
14638948 AAAATTA
1 AAAATTA
14638955 TTTAAAAATT
Statistics
Matches: 41, Mismatches: 5, Indels: 2
0.85 0.10 0.04
Matches are distributed among these distances:
39 19 0.46
40 5 0.12
41 17 0.41
ACGTcount: A:0.67, C:0.02, G:0.01, T:0.30
Consensus pattern (41 bp):
AAAATTAAAAAAAAAGAAAAAAATTATTTAAAAAAATCATT
Found at i:14638942 original size:41 final size:39
Alignment explanation
Indices: 14638878--14638963 Score: 136
Period size: 41 Copynumber: 2.2 Consensus size: 39
14638868 AAAATTAAAA
* *
14638878 AAAAAGAAAAAAATATTTTAAAAATCATTAAAATTATTT
1 AAAAATAAAAAAATATTTAAAAAATCATTAAAATTATTT
14638917 AAAAATAAAAAAATTATTTAAAAAAATCATTAAAATTATTT
1 AAAAATAAAAAAA-TATTT-AAAAAATCATTAAAATTATTT
14638958 AAAAAT
1 AAAAAT
14638964 TATAACTAAA
Statistics
Matches: 43, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
39 12 0.28
40 5 0.12
41 26 0.60
ACGTcount: A:0.64, C:0.02, G:0.01, T:0.33
Consensus pattern (39 bp):
AAAAATAAAAAAATATTTAAAAAATCATTAAAATTATTT
Found at i:14638974 original size:22 final size:20
Alignment explanation
Indices: 14638894--14638977 Score: 73
Period size: 22 Copynumber: 4.0 Consensus size: 20
14638884 AAAAAAATAT
*
14638894 TTTAAAAATCATTA-AAATTA
1 TTTAAAAAT-ATAATAAATTA
*
14638914 TTTAAAAATA-AAAAAATTA
1 TTTAAAAATATAATAAATTA
* *
14638933 TTTAAAAAAATCATTAAAATTA
1 TTTAAAAATAT-AAT-AAATTA
14638955 TTTAAAAATTATAACTAAATTA
1 TTTAAAAA-TATAA-TAAATTA
14638977 T
1 T
14638978 AAAAGTTGTA
Statistics
Matches: 52, Mismatches: 6, Indels: 10
0.76 0.09 0.15
Matches are distributed among these distances:
18 1 0.02
19 16 0.31
20 9 0.17
21 1 0.02
22 22 0.42
23 3 0.06
ACGTcount: A:0.58, C:0.04, G:0.00, T:0.38
Consensus pattern (20 bp):
TTTAAAAATATAATAAATTA
Found at i:14643722 original size:24 final size:23
Alignment explanation
Indices: 14643667--14643725 Score: 64
Period size: 24 Copynumber: 2.5 Consensus size: 23
14643657 TTAGTATATG
* *
14643667 AAATATAAATTTTAAATATTTTT
1 AAATATAAATATTAAATATTTTA
* *
14643690 AAGTAATAAATATTAATTATTTATA
1 AAAT-ATAAATATTAAATATTT-TA
14643715 AAATATAAATA
1 AAATATAAATA
14643726 GAATATATAA
Statistics
Matches: 29, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
23 3 0.10
24 22 0.76
25 4 0.14
ACGTcount: A:0.54, C:0.00, G:0.02, T:0.44
Consensus pattern (23 bp):
AAATATAAATATTAAATATTTTA
Found at i:14643770 original size:33 final size:32
Alignment explanation
Indices: 14643675--14643770 Score: 81
Period size: 33 Copynumber: 2.9 Consensus size: 32
14643665 TGAAATATAA
14643675 ATTTTAAATATTTTTAAGTAATAAATATT-AATTAT
1 ATTTTAAATA--TTTAAGT-AT-AATATTAAATTAT
* * * *
14643710 -TTATAAA-ATATAAATAGAATATATAAATTAT
1 ATTTTAAATATTTAAGTATAATAT-TAAATTAT
14643741 ATTTTAAATATTTAAGTATAATTATTAAAT
1 ATTTTAAATATTTAAGTATAA-TATTAAAT
14643771 ATTTATAATT
Statistics
Matches: 48, Mismatches: 8, Indels: 12
0.71 0.12 0.18
Matches are distributed among these distances:
29 5 0.10
30 2 0.04
31 11 0.23
32 6 0.12
33 15 0.31
34 9 0.19
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (32 bp):
ATTTTAAATATTTAAGTATAATATTAAATTAT
Found at i:14649933 original size:26 final size:26
Alignment explanation
Indices: 14649873--14649934 Score: 90
Period size: 27 Copynumber: 2.4 Consensus size: 26
14649863 CTCGGCCCAT
* *
14649873 TTTTAAAAT-AAACATTAAAAAATTA
1 TTTTAAAATAAAAAAATAAAAAATTA
14649898 TTTTAAAAATAAAAAAATAAAAAATTA
1 TTTT-AAAATAAAAAAATAAAAAATTA
14649925 TTTTAAAATA
1 TTTTAAAATA
14649935 TTTTAAAATT
Statistics
Matches: 33, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
25 4 0.12
26 11 0.33
27 18 0.55
ACGTcount: A:0.63, C:0.02, G:0.00, T:0.35
Consensus pattern (26 bp):
TTTTAAAATAAAAAAATAAAAAATTA
Found at i:14649948 original size:28 final size:27
Alignment explanation
Indices: 14649879--14649952 Score: 85
Period size: 28 Copynumber: 2.6 Consensus size: 27
14649869 CCATTTTTAA
14649879 AATAAACATTAAAAAATTATTTTAAAAAT
1 AATAAA-ATT-AAAAATTATTTTAAAAAT
* *
14649908 AAAAAAATAAAAAATTATTTTAAAATAT
1 AATAAAATTAAAAATTATTTTAAAA-AT
**
14649936 TTTAAAATTAAAAATTA
1 AATAAAATTAAAAATTA
14649953 AAAATTAAAA
Statistics
Matches: 38, Mismatches: 6, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
27 16 0.42
28 17 0.45
29 5 0.13
ACGTcount: A:0.64, C:0.01, G:0.00, T:0.35
Consensus pattern (27 bp):
AATAAAATTAAAAATTATTTTAAAAAT
Found at i:14649955 original size:13 final size:13
Alignment explanation
Indices: 14649937--14649977 Score: 64
Period size: 13 Copynumber: 3.1 Consensus size: 13
14649927 TTAAAATATT
14649937 TTAAAATTAAAAA
1 TTAAAATTAAAAA
14649950 TTAAAAATTAAAAA
1 TT-AAAATTAAAAA
*
14649964 TTAAAATAAAAAA
1 TTAAAATTAAAAA
14649977 T
1 T
14649978 ATATTTATTA
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
13 13 0.50
14 13 0.50
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (13 bp):
TTAAAATTAAAAA
Found at i:14649976 original size:14 final size:14
Alignment explanation
Indices: 14649939--14649977 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 14
14649929 AAAATATTTT
*
14649939 AAAATTAAAAATTA
1 AAAATAAAAAATTA
*
14649953 AAAATTAAAAATT-
1 AAAATAAAAAATTA
14649966 AAAATAAAAAAT
1 AAAATAAAAAAT
14649978 ATATTTATTA
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
13 11 0.46
14 13 0.54
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (14 bp):
AAAATAAAAAATTA
Found at i:14649978 original size:7 final size:7
Alignment explanation
Indices: 14649939--14649969 Score: 62
Period size: 7 Copynumber: 4.4 Consensus size: 7
14649929 AAAATATTTT
14649939 AAAATTA
1 AAAATTA
14649946 AAAATTA
1 AAAATTA
14649953 AAAATTA
1 AAAATTA
14649960 AAAATTA
1 AAAATTA
14649967 AAA
1 AAA
14649970 TAAAAAATAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 24 1.00
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (7 bp):
AAAATTA
Found at i:14665950 original size:18 final size:19
Alignment explanation
Indices: 14665927--14665967 Score: 59
Period size: 18 Copynumber: 2.3 Consensus size: 19
14665917 TTTAAATACA
14665927 TTTATTTTAT-TATATCAT
1 TTTATTTTATCTATATCAT
*
14665945 TTTA-TTTATCTATATCCT
1 TTTATTTTATCTATATCAT
14665963 TTTAT
1 TTTAT
14665968 ATAATTTTTA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
17 5 0.25
18 15 0.75
ACGTcount: A:0.24, C:0.10, G:0.00, T:0.66
Consensus pattern (19 bp):
TTTATTTTATCTATATCAT
Found at i:14666005 original size:3 final size:3
Alignment explanation
Indices: 14665990--14666079 Score: 99
Period size: 3 Copynumber: 30.0 Consensus size: 3
14665980 TTTAAGATTT
* * ** * * *
14665990 TTA TTA TTG TTA TTA TTA TTA TTA TTA ATA CCA TCA TCA TCA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
**
14666038 TTA TTA TTA TTA TTA TTA TTA CCA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
14666080 AATTGTTTTA
Statistics
Matches: 76, Mismatches: 11, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
3 76 1.00
ACGTcount: A:0.33, C:0.08, G:0.01, T:0.58
Consensus pattern (3 bp):
TTA
Found at i:14670905 original size:5 final size:5
Alignment explanation
Indices: 14670871--14670931 Score: 58
Period size: 5 Copynumber: 12.4 Consensus size: 5
14670861 ATGTTTTAAA
*
14670871 TATAT TAT-T T-TAT TATAT AATATAA TATAT TATAT TA-AT TATAT TATAT
1 TATAT TATAT TATAT TATAT --TATAT TATAT TATAT TATAT TATAT TATAT
14670920 TAT-T ATATAT TA
1 TATAT -TATAT TA
14670932 AATAAACTAA
Statistics
Matches: 47, Mismatches: 2, Indels: 14
0.75 0.03 0.22
Matches are distributed among these distances:
3 1 0.02
4 9 0.19
5 32 0.68
6 1 0.02
7 4 0.09
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (5 bp):
TATAT
Found at i:14670923 original size:22 final size:23
Alignment explanation
Indices: 14670871--14670927 Score: 73
Period size: 22 Copynumber: 2.6 Consensus size: 23
14670861 ATGTTTTAAA
*
14670871 TATATTATTTTATTATATAATAT
1 TATATTATTATATTATATAATAT
* *
14670894 AATA-TATTATATTA-ATTATAT
1 TATATTATTATATTATATAATAT
14670915 TATATTATTATAT
1 TATATTATTATAT
14670928 ATTAAATAAA
Statistics
Matches: 29, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
21 9 0.31
22 17 0.59
23 3 0.10
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (23 bp):
TATATTATTATATTATATAATAT
Found at i:14670928 original size:24 final size:26
Alignment explanation
Indices: 14670869--14670932 Score: 80
Period size: 26 Copynumber: 2.6 Consensus size: 26
14670859 TTATGTTTTA
*
14670869 AATATATTAT-TTTATTATATAATAT
1 AATATATTATATTAATTATATAATAT
*
14670894 AATATATTATATTAATTATATTATAT
1 AATATATTATATTAATTATATAATAT
*
14670920 TAT-TA-TATATTAA
1 AATATATTATATTAA
14670933 ATAAACTAAA
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
24 8 0.23
25 12 0.34
26 15 0.43
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (26 bp):
AATATATTATATTAATTATATAATAT
Found at i:14671069 original size:3 final size:3
Alignment explanation
Indices: 14671063--14671100 Score: 76
Period size: 3 Copynumber: 12.7 Consensus size: 3
14671053 TTATAAAATA
14671063 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
14671101 GTTAAAATAA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 35 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:14671576 original size:22 final size:24
Alignment explanation
Indices: 14671548--14671591 Score: 74
Period size: 23 Copynumber: 1.9 Consensus size: 24
14671538 TATGGCAAGA
14671548 AATTAAG-TAGAAAAG-AAGTATG
1 AATTAAGCTAGAAAAGTAAGTATG
14671570 AATTAAGCTAGAAAAGTAAGTA
1 AATTAAGCTAGAAAAGTAAGTA
14671592 AGCTTAGTTA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
22 7 0.35
23 8 0.40
24 5 0.25
ACGTcount: A:0.55, C:0.02, G:0.20, T:0.23
Consensus pattern (24 bp):
AATTAAGCTAGAAAAGTAAGTATG
Found at i:14672396 original size:17 final size:17
Alignment explanation
Indices: 14672324--14672449 Score: 57
Period size: 17 Copynumber: 7.4 Consensus size: 17
14672314 AAAAAGAAGA
*
14672324 AATTTTTGAAACACGAA
1 AATTTTTGAAACACGAG
14672341 AATTTTAT-AAACACG-G
1 AATTTT-TGAAACACGAG
* ** *
14672357 -TTTGTTTTTAACACGAC
1 AATT-TTTGAAACACGAG
*
14672374 AGTTTTTGAAACACGAG
1 AATTTTTGAAACACGAG
* **
14672391 AATTTTTTTCAAAACATAAG
1 AA--TTTTT-GAAACACGAG
*
14672411 AA-TTTTAAAACACGA-
1 AATTTTTGAAACACGAG
*
14672426 ACATTTGTGAAACAC-AG
1 A-ATTTTTGAAACACGAG
14672443 AATTTTT
1 AATTTTT
14672450 TTTTGAAAAA
Statistics
Matches: 81, Mismatches: 17, Indels: 23
0.67 0.14 0.19
Matches are distributed among these distances:
15 4 0.05
16 22 0.27
17 38 0.47
18 3 0.04
19 5 0.06
20 9 0.11
ACGTcount: A:0.40, C:0.13, G:0.12, T:0.35
Consensus pattern (17 bp):
AATTTTTGAAACACGAG
Found at i:14672576 original size:18 final size:16
Alignment explanation
Indices: 14672529--14672700 Score: 74
Period size: 17 Copynumber: 9.5 Consensus size: 16
14672519 AAATCACCGG
14672529 AATTTTTGAAAACACGAA
1 AATTTTTG-AAACACG-A
**
14672547 AATCCTTGAAACACTGA
1 AATTTTTGAAACAC-GA
*
14672564 AATTTTTGAAAACATGA
1 AATTTTTG-AAACACGA
* *
14672581 GGATTTTTGAAATACGA
1 -AATTTTTGAAACACGA
* *
14672598 AATTTTTTTGAGAATAGGA
1 AA--TTTTTGA-AACACGA
14672617 AGATTTTTTTTTTGAAAACACGGA
1 A-A-----TTTTTG-AAACAC-GA
* *
14672641 AATTTTTAAAACACGGG
1 AATTTTTGAAACAC-GA
14672658 AATTTTTGAAACACGA
1 AATTTTTGAAACACGA
*
14672674 AATTTTTTTTAAACACGA
1 AA--TTTTTGAAACACGA
14672692 CAATTTTTG
1 -AATTTTTG
14672701 GAATACGAGA
Statistics
Matches: 121, Mismatches: 18, Indels: 31
0.71 0.11 0.18
Matches are distributed among these distances:
16 4 0.03
17 47 0.39
18 44 0.36
19 9 0.07
20 1 0.01
23 12 0.10
24 4 0.03
ACGTcount: A:0.40, C:0.10, G:0.15, T:0.36
Consensus pattern (16 bp):
AATTTTTGAAACACGA
Found at i:14672591 original size:35 final size:34
Alignment explanation
Indices: 14672529--14672604 Score: 89
Period size: 35 Copynumber: 2.2 Consensus size: 34
14672519 AAATCACCGG
14672529 AATTTTTGAAAACACGAAAATCCTTGAAACACTGA
1 AATTTTTGAAAACACGAAAATCCTTGAAACAC-GA
* ** ** *
14672564 AATTTTTGAAAACATGAGGATTTTTGAAATACGA
1 AATTTTTGAAAACACGAAAATCCTTGAAACACGA
14672598 AATTTTT
1 AATTTTT
14672605 TTGAGAATAG
Statistics
Matches: 35, Mismatches: 6, Indels: 1
0.83 0.14 0.02
Matches are distributed among these distances:
34 9 0.26
35 26 0.74
ACGTcount: A:0.42, C:0.11, G:0.13, T:0.34
Consensus pattern (34 bp):
AATTTTTGAAAACACGAAAATCCTTGAAACACGA
Found at i:14672606 original size:19 final size:20
Alignment explanation
Indices: 14672584--14672626 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
14672574 AACATGAGGA
14672584 TTTTTGA-AATACGAA-ATT
1 TTTTTGAGAATACGAAGATT
*
14672602 TTTTTGAGAATAGGAAGATT
1 TTTTTGAGAATACGAAGATT
14672622 TTTTT
1 TTTTT
14672627 TTTGAAAACA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 7 0.32
19 7 0.32
20 8 0.36
ACGTcount: A:0.33, C:0.02, G:0.16, T:0.49
Consensus pattern (20 bp):
TTTTTGAGAATACGAAGATT
Found at i:14672645 original size:23 final size:23
Alignment explanation
Indices: 14672600--14672647 Score: 62
Period size: 23 Copynumber: 2.1 Consensus size: 23
14672590 AAATACGAAA
* *
14672600 TTTTTTTGAGAATAGGAAGATTT
1 TTTTTTTGAAAACAGGAAGATTT
14672623 TTTTTTTGAAAACACGGAA-ATTT
1 TTTTTTTGAAAACA-GGAAGATTT
14672646 TT
1 TT
14672648 AAAACACGGG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
23 18 0.82
24 4 0.18
ACGTcount: A:0.31, C:0.04, G:0.17, T:0.48
Consensus pattern (23 bp):
TTTTTTTGAAAACAGGAAGATTT
Found at i:14672681 original size:111 final size:113
Alignment explanation
Indices: 14672508--14672719 Score: 261
Period size: 111 Copynumber: 1.9 Consensus size: 113
14672498 GAATTTTTTC
* *
14672508 TTTTTTTTTTTAAATCACCGGAATTTTTGAAAACACGAAAATCCTTGAAACACTGAAATTTTTGA
1 TTTTTTTTTTGAAAACACCGGAATTTTTGAAAACACGAAAATCCTTGAAACACTGAAATTTTTGA
* **
14672573 AAACATGAGGATTTTTGAAATAC-GAAATTTTTTTGAGAATAGGAAGA
66 AAACACGACAATTTTTGAAATACAGAAATTTTTTTGAGAATAGGAAGA
** **
14672620 TTTTTTTTTTGAAAACA-CGGAAATTTTT-AAAACACGGGAATTTTTGAAACAC-GAAATTTTTT
1 TTTTTTTTTTGAAAACACCGG-AATTTTTGAAAACACGAAAATCCTTGAAACACTGAAA-TTTTT
** *
14672682 TTAAACACGACAATTTTTGGAATACGAGAAATTTTTTT
64 GAAAACACGACAATTTTTGAAATAC-AGAAATTTTTTT
14672720 TTTAAACTAC
Statistics
Matches: 84, Mismatches: 12, Indels: 7
0.82 0.12 0.07
Matches are distributed among these distances:
110 4 0.05
111 47 0.56
112 22 0.26
113 11 0.13
ACGTcount: A:0.37, C:0.10, G:0.14, T:0.39
Consensus pattern (113 bp):
TTTTTTTTTTGAAAACACCGGAATTTTTGAAAACACGAAAATCCTTGAAACACTGAAATTTTTGA
AAACACGACAATTTTTGAAATACAGAAATTTTTTTGAGAATAGGAAGA
Found at i:14672682 original size:35 final size:35
Alignment explanation
Indices: 14672625--14672719 Score: 97
Period size: 35 Copynumber: 2.7 Consensus size: 35
14672615 GAAGATTTTT
**
14672625 TTTTTGAAAACACGGAAA--TTTTTAAAACACGGGAA
1 TTTTTG-AAACAC-GAAATTTTTTTAAAACACGACAA
*
14672660 TTTTTGAAACACGAAATTTTTTTTAAACACGACAA
1 TTTTTGAAACACGAAATTTTTTTAAAACACGACAA
14672695 TTTTTGGAATACGA-GAAATTTTTTT
1 TTTTT-GAA-AC-ACGAAATTTTTTT
14672720 TTTAAACTAC
Statistics
Matches: 52, Mismatches: 3, Indels: 8
0.83 0.05 0.13
Matches are distributed among these distances:
33 4 0.08
34 6 0.12
35 25 0.48
36 3 0.06
37 13 0.25
38 1 0.02
ACGTcount: A:0.38, C:0.11, G:0.14, T:0.38
Consensus pattern (35 bp):
TTTTTGAAACACGAAATTTTTTTAAAACACGACAA
Found at i:14672682 original size:94 final size:92
Alignment explanation
Indices: 14672531--14672763 Score: 217
Period size: 94 Copynumber: 2.5 Consensus size: 92
14672521 ATCACCGGAA
* ** * * * * *
14672531 TTTTTGAAAACACGAAAATCCTTGAAACACTGAAATTTTTGAAAACATGAGGATTTTTGAAATAC
1 TTTTTGAAAACACGGAAATTTTTGAAACACGGGAATTTTTG-AAACACGAGAATTTTTGAAACAC
14672596 GA-AATTTTTTTGAGAATA-G-GAAGATTTTT
65 GACAA--TTTTTG-GAATACGAGAA-ATTTTT
* *
14672625 TTTTTGAAAACACGGAAATTTTTAAAACACGGGAATTTTTGAAACACGA-AATTTTTTTTAAACA
1 TTTTTGAAAACACGGAAATTTTTGAAACACGGGAATTTTTGAAACACGAGAA--TTTTTGAAACA
14672689 CGACAATTTTTGGAATACGAGAAATTTTT
64 CGACAATTTTTGGAATACGAGAAATTTTT
* * * * *
14672718 TTTTT--AAACTACGGAATTTTTTGAAATACGAGAATATTAGAAACAC
1 TTTTTGAAAAC-ACGGAAATTTTTGAAACACGGGAATTTTTGAAACAC
14672764 TAAAATAATG
Statistics
Matches: 117, Mismatches: 16, Indels: 14
0.80 0.11 0.10
Matches are distributed among these distances:
91 4 0.03
92 36 0.31
93 25 0.21
94 50 0.43
95 2 0.02
ACGTcount: A:0.39, C:0.10, G:0.15, T:0.36
Consensus pattern (92 bp):
TTTTTGAAAACACGGAAATTTTTGAAACACGGGAATTTTTGAAACACGAGAATTTTTGAAACACG
ACAATTTTTGGAATACGAGAAATTTTT
Found at i:14672696 original size:19 final size:18
Alignment explanation
Indices: 14672584--14672699 Score: 69
Period size: 18 Copynumber: 6.2 Consensus size: 18
14672574 AACATGAGGA
*
14672584 TTTTTGAAATACGAAATT
1 TTTTTGAAACACGAAATT
* *
14672602 TTTTTGAGAATAGGAAGATTTTT
1 TTTTTGA-AACACGAA-A---TT
14672625 TTTTTGAAAACACGGAAA--
1 TTTTTG-AAACAC-GAAATT
* *
14672643 TTTTTAAAACACGGGAA--
1 TTTTTGAAACAC-GAAATT
14672660 TTTTTGAAACACGAAATT
1 TTTTTGAAACACGAAATT
*
14672678 TTTTTTAAACACGACAATT
1 TTTTTGAAACACGA-AATT
14672697 TTT
1 TTT
14672700 GGAATACGAG
Statistics
Matches: 80, Mismatches: 8, Indels: 19
0.75 0.07 0.18
Matches are distributed among these distances:
16 3 0.04
17 21 0.26
18 25 0.31
19 14 0.17
20 1 0.01
23 12 0.15
24 4 0.05
ACGTcount: A:0.37, C:0.09, G:0.14, T:0.41
Consensus pattern (18 bp):
TTTTTGAAACACGAAATT
Found at i:14672736 original size:39 final size:40
Alignment explanation
Indices: 14672676--14672751 Score: 111
Period size: 40 Copynumber: 1.9 Consensus size: 40
14672666 AAACACGAAA
*
14672676 TTTTTTTTAAACACGACAA-TTTTTGGAATACGAGAAATT
1 TTTTTTTTAAACACGACAATTTTTTGAAATACGAGAAATT
*
14672715 TTTTTTTTAAACTACG-GAATTTTTTGAAATACGAGAA
1 TTTTTTTTAAAC-ACGACAATTTTTTGAAATACGAGAA
14672752 TATTAGAAAC
Statistics
Matches: 33, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
39 14 0.42
40 19 0.58
ACGTcount: A:0.36, C:0.09, G:0.13, T:0.42
Consensus pattern (40 bp):
TTTTTTTTAAACACGACAATTTTTTGAAATACGAGAAATT
Found at i:14672739 original size:18 final size:18
Alignment explanation
Indices: 14672584--14672752 Score: 62
Period size: 18 Copynumber: 9.0 Consensus size: 18
14672574 AACATGAGGA
14672584 TTTTTGAAATACGA-AATT
1 TTTTTGAAATACGAGAA-T
* *
14672602 TTTTTGAGAATAGGAAGATTTTT
1 TTTTTGA-AATACG-AGA---AT
* *
14672625 TTTTTGAAAACACG-GAAA
1 TTTTTG-AAATACGAGAAT
* * *
14672643 TTTTTAAAACACGGGAA-
1 TTTTTGAAATACGAGAAT
*
14672660 TTTTTGAAACACGA-AATT
1 TTTTTGAAATACGAGAA-T
* * *
14672678 TTTTTTAAACACGACAA-
1 TTTTTGAAATACGAGAAT
*
14672695 TTTTTGGAATACGAGAAATTTT
1 TTTTTGAAATACGAG-AA---T
*
14672717 TTTTTTAAACTACG-GAAT
1 TTTTTGAAA-TACGAGAAT
14672735 TTTTTGAAATACGAGAAT
1 TTTTTGAAATACGAGAAT
14672753 ATTAGAAACA
Statistics
Matches: 116, Mismatches: 17, Indels: 36
0.69 0.10 0.21
Matches are distributed among these distances:
16 2 0.02
17 34 0.29
18 43 0.37
19 7 0.06
20 1 0.01
21 5 0.04
22 8 0.07
23 15 0.13
24 1 0.01
ACGTcount: A:0.37, C:0.08, G:0.15, T:0.40
Consensus pattern (18 bp):
TTTTTGAAATACGAGAAT
Found at i:14672739 original size:40 final size:39
Alignment explanation
Indices: 14672643--14672751 Score: 111
Period size: 35 Copynumber: 2.9 Consensus size: 39
14672633 AACACGGAAA
* ** *
14672643 TTTTTAAAACACGGGAATTTTTGAAACAC--GAAA--TT
1 TTTTTTAAACACGACAATTTTTGAAATACGAGAAATTTT
*
14672678 TTTTTTAAACACGACAATTTTTGGAATACGAGAAATTTT
1 TTTTTTAAACACGACAATTTTTGAAATACGAGAAATTTT
*
14672717 TTTTTTAAACTACGGA-ATTTTTTGAAATACGAGAA
1 TTTTTTAAAC-AC-GACAATTTTTGAAATACGAGAA
14672752 TATTAGAAAC
Statistics
Matches: 61, Mismatches: 7, Indels: 7
0.81 0.09 0.09
Matches are distributed among these distances:
35 24 0.39
37 4 0.07
39 12 0.20
40 19 0.31
41 2 0.03
ACGTcount: A:0.38, C:0.10, G:0.14, T:0.39
Consensus pattern (39 bp):
TTTTTTAAACACGACAATTTTTGAAATACGAGAAATTTT
Found at i:14673011 original size:25 final size:25
Alignment explanation
Indices: 14672980--14673058 Score: 74
Period size: 25 Copynumber: 3.2 Consensus size: 25
14672970 AAAACTCGAC
14672980 TATTTTTGAAATACGAGAAATTTAT
1 TATTTTTGAAATACGAGAAATTTAT
* * *
14673005 TATTTTTAAAAGAAC-ACG-AATATAT
1 TATTTTTGAAA-TACGA-GAAATTTAT
*
14673030 T-TTTTTGAAATACGAGAAGTTTTAT
1 TATTTTTGAAATACGAGAA-ATTTAT
14673055 TATT
1 TATT
14673059 ATTATTTTGA
Statistics
Matches: 41, Mismatches: 7, Indels: 11
0.69 0.12 0.19
Matches are distributed among these distances:
23 3 0.07
24 10 0.24
25 23 0.56
26 5 0.12
ACGTcount: A:0.39, C:0.05, G:0.11, T:0.44
Consensus pattern (25 bp):
TATTTTTGAAATACGAGAAATTTAT
Found at i:14673394 original size:3 final size:3
Alignment explanation
Indices: 14673386--14673425 Score: 80
Period size: 3 Copynumber: 13.3 Consensus size: 3
14673376 TGCATTAAAA
14673386 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
14673426 TAAAAAAATG
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 37 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TAT
Found at i:14673815 original size:10 final size:10
Alignment explanation
Indices: 14673808--14673870 Score: 58
Period size: 10 Copynumber: 6.3 Consensus size: 10
14673798 CCTTTTTTGT
14673808 TTTCTTTTTC
1 TTTCTTTTTC
14673818 TTTCTTTTTC
1 TTTCTTTTTC
14673828 TCTT-TTTTT-
1 T-TTCTTTTTC
14673837 TTTCTTTTTCC
1 TTTCTTTTT-C
* *
14673848 CTTCTTCTTC
1 TTTCTTTTTC
* *
14673858 TTCCCTTTTC
1 TTTCTTTTTC
14673868 TTT
1 TTT
14673871 TTTCTGTCTT
Statistics
Matches: 42, Mismatches: 7, Indels: 8
0.74 0.12 0.14
Matches are distributed among these distances:
8 2 0.05
9 6 0.14
10 25 0.60
11 9 0.21
ACGTcount: A:0.00, C:0.25, G:0.00, T:0.75
Consensus pattern (10 bp):
TTTCTTTTTC
Found at i:14673833 original size:23 final size:22
Alignment explanation
Indices: 14673799--14673843 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 22
14673789 TTATTATTCC
*
14673799 CTTTTTTGTTTTCTTTTTCTTT
1 CTTTTTTCTTTTCTTTTTCTTT
*
14673821 CTTTTTCTCTTTTTTTTTTCTTT
1 CTTTTT-TCTTTTCTTTTTCTTT
14673844 TTCCCTTCTT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
22 6 0.30
23 14 0.70
ACGTcount: A:0.00, C:0.16, G:0.02, T:0.82
Consensus pattern (22 bp):
CTTTTTTCTTTTCTTTTTCTTT
Found at i:14673853 original size:30 final size:30
Alignment explanation
Indices: 14673799--14673858 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
14673789 TTATTATTCC
* *
14673799 CTTTTTTGTTTTCTTTTTCTTTCTTTTTCT
1 CTTTTTTGTTTTCTTTTTCCTTCTTCTTCT
14673829 CTTTTTT-TTTTCTTTTTCCCTTCTTCTTCT
1 CTTTTTTGTTTTCTTTTT-CCTTCTTCTTCT
14673859 TCCCTTTTCT
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
29 10 0.37
30 17 0.63
ACGTcount: A:0.00, C:0.22, G:0.02, T:0.77
Consensus pattern (30 bp):
CTTTTTTGTTTTCTTTTTCCTTCTTCTTCT
Found at i:14673855 original size:14 final size:13
Alignment explanation
Indices: 14673836--14673872 Score: 56
Period size: 14 Copynumber: 2.8 Consensus size: 13
14673826 TCTCTTTTTT
14673836 TTTTCTTTTTCCC
1 TTTTCTTTTTCCC
*
14673849 TTCTTCTTCTTCCC
1 TT-TTCTTTTTCCC
14673863 TTTTCTTTTT
1 TTTTCTTTTT
14673873 TCTGTCTTTC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
13 9 0.43
14 12 0.57
ACGTcount: A:0.00, C:0.30, G:0.00, T:0.70
Consensus pattern (13 bp):
TTTTCTTTTTCCC
Found at i:14675042 original size:17 final size:17
Alignment explanation
Indices: 14675020--14675070 Score: 75
Period size: 17 Copynumber: 3.0 Consensus size: 17
14675010 GACTAATCCC
*
14675020 TATACATCACTTAGGTA
1 TATACATTACTTAGGTA
*
14675037 TATACATTACCTAGGTA
1 TATACATTACTTAGGTA
*
14675054 TATATATTACTTAGGTA
1 TATACATTACTTAGGTA
14675071 CATGCCACGT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 30 1.00
ACGTcount: A:0.35, C:0.14, G:0.12, T:0.39
Consensus pattern (17 bp):
TATACATTACTTAGGTA
Found at i:14677080 original size:13 final size:13
Alignment explanation
Indices: 14677055--14677090 Score: 56
Period size: 13 Copynumber: 2.8 Consensus size: 13
14677045 GTTTGCCTAT
14677055 TCTGTTTCT-TTC
1 TCTGTTTCTATTC
14677067 TCTGTTTCTATTC
1 TCTGTTTCTATTC
*
14677080 TCTTTTTCTAT
1 TCTGTTTCTAT
14677091 CCTTTCTTTG
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
12 9 0.41
13 13 0.59
ACGTcount: A:0.06, C:0.22, G:0.06, T:0.67
Consensus pattern (13 bp):
TCTGTTTCTATTC
Found at i:14677960 original size:30 final size:29
Alignment explanation
Indices: 14677926--14678053 Score: 96
Period size: 30 Copynumber: 4.3 Consensus size: 29
14677916 GGGGCCAAGC
*
14677926 ATAATTTTGAGAAAATTTAGGGGTCAAAAT
1 ATAATTTT-AGAAAATTGAGGGGTCAAAAT
* * * *
14677956 ATAATTTCA-AGAAGTTGATGGGCCAAAAT
1 ATAATTTTAGA-AAATTGAGGGGTCAAAAT
* * * *
14677985 GTAATTTTAGGAAAGTTTAGGGGTGAAAAT
1 ATAATTTTA-GAAAATTGAGGGGTCAAAAT
* *
14678015 ATAATTTTTAAAAAAGTTGAGGGGTTAAAAT
1 ATAA-TTTTAGAAAA-TTGAGGGGTCAAAAT
*
14678046 GTAATTTT
1 ATAATTTT
14678054 TATTTTTGTT
Statistics
Matches: 76, Mismatches: 17, Indels: 10
0.74 0.17 0.10
Matches are distributed among these distances:
28 1 0.01
29 22 0.29
30 31 0.41
31 22 0.29
ACGTcount: A:0.41, C:0.03, G:0.22, T:0.34
Consensus pattern (29 bp):
ATAATTTTAGAAAATTGAGGGGTCAAAAT
Found at i:14678008 original size:59 final size:60
Alignment explanation
Indices: 14677927--14678053 Score: 159
Period size: 59 Copynumber: 2.1 Consensus size: 60
14677917 GGGCCAAGCA
* * *
14677927 TAATTTTGAGAAAATTTAGGGGTCAAAATATAA-TTTCAAGAAGTTGATGGGCCAAAATG
1 TAATTTTGAGAAAATTTAGGGGTCAAAATATAATTTTAAAAAAGTTGAGGGGCCAAAATG
* * **
14677986 TAATTTT-AGGAAAGTTTAGGGGTGAAAATATAATTTTTAAAAAAGTTGAGGGGTTAAAATG
1 TAATTTTGA-GAAAATTTAGGGGTCAAAATATAA-TTTTAAAAAAGTTGAGGGGCCAAAATG
14678047 TAATTTT
1 TAATTTT
14678054 TATTTTTGTT
Statistics
Matches: 58, Mismatches: 7, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
58 1 0.02
59 29 0.50
61 28 0.48
ACGTcount: A:0.40, C:0.03, G:0.22, T:0.35
Consensus pattern (60 bp):
TAATTTTGAGAAAATTTAGGGGTCAAAATATAATTTTAAAAAAGTTGAGGGGCCAAAATG
Found at i:14678031 original size:31 final size:31
Alignment explanation
Indices: 14677926--14678055 Score: 106
Period size: 31 Copynumber: 4.3 Consensus size: 31
14677916 GGGGCCAAGC
* * *
14677926 ATAATTTTGAGAAAA-TTTAGGGGTCAAAAT
1 ATAATTTTTAAAAAAGTTGAGGGGTCAAAAT
* * * *
14677956 ATAA--TTTCAAGAAGTTGATGGGCCAAAAT
1 ATAATTTTTAAAAAAGTTGAGGGGTCAAAAT
* ** * *
14677985 GTAA-TTTTAGGAAAGTTTAGGGGTGAAAAT
1 ATAATTTTTAAAAAAGTTGAGGGGTCAAAAT
*
14678015 ATAATTTTTAAAAAAGTTGAGGGGTTAAAAT
1 ATAATTTTTAAAAAAGTTGAGGGGTCAAAAT
*
14678046 GTAATTTTTA
1 ATAATTTTTA
14678056 TTTTTGTTTT
Statistics
Matches: 75, Mismatches: 22, Indels: 5
0.74 0.22 0.05
Matches are distributed among these distances:
28 5 0.07
29 15 0.20
30 24 0.32
31 31 0.41
ACGTcount: A:0.41, C:0.03, G:0.22, T:0.35
Consensus pattern (31 bp):
ATAATTTTTAAAAAAGTTGAGGGGTCAAAAT
Found at i:14678390 original size:24 final size:26
Alignment explanation
Indices: 14678336--14678389 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 26
14678326 TCTAATGCTT
**
14678336 TATTGGTGTGTTTGGGAGGATATGATA
1 TATTGGTGTGTTAAGGAGGATAT-ATA
*
14678363 TATTGGTGTGTTAAGGAGGATTTATA
1 TATTGGTGTGTTAAGGAGGATATATA
14678389 T
1 T
14678390 TATCCCGGGT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
26 4 0.17
27 20 0.83
ACGTcount: A:0.24, C:0.00, G:0.33, T:0.43
Consensus pattern (26 bp):
TATTGGTGTGTTAAGGAGGATATATA
Found at i:14687777 original size:17 final size:17
Alignment explanation
Indices: 14687755--14687793 Score: 60
Period size: 17 Copynumber: 2.3 Consensus size: 17
14687745 AGATTATCGG
*
14687755 AAGCTCTGACGGGTTGA
1 AAGCTCGGACGGGTTGA
*
14687772 AAGCTCGGATGGGTTGA
1 AAGCTCGGACGGGTTGA
14687789 AAGCT
1 AAGCT
14687794 TGTCGGAGTT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.26, C:0.15, G:0.36, T:0.23
Consensus pattern (17 bp):
AAGCTCGGACGGGTTGA
Found at i:14689548 original size:12 final size:11
Alignment explanation
Indices: 14689521--14689558 Score: 53
Period size: 10 Copynumber: 3.5 Consensus size: 11
14689511 GAAAATAGTC
14689521 AAAATTAATA-
1 AAAATTAATAT
14689531 AAAATTAACTAT
1 AAAATTAA-TAT
14689543 AAAATTAAT-T
1 AAAATTAATAT
14689553 AAAATT
1 AAAATT
14689559 CATCATGTTT
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
10 15 0.58
11 3 0.12
12 8 0.31
ACGTcount: A:0.63, C:0.03, G:0.00, T:0.34
Consensus pattern (11 bp):
AAAATTAATAT
Found at i:14691071 original size:22 final size:25
Alignment explanation
Indices: 14691022--14691077 Score: 64
Period size: 25 Copynumber: 2.3 Consensus size: 25
14691012 TATATTATAT
* *
14691022 AATAATAATAATAATAAGTAAATGA
1 AATAATAATAACAATAAGCAAATGA
14691047 AATAATAATAACAA-AA-CAAAT-A
1 AATAATAATAACAATAAGCAAATGA
14691069 AATAGATAA
1 AATA-ATAA
14691078 AAGAAATAGA
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
22 5 0.18
23 8 0.29
24 2 0.07
25 13 0.46
ACGTcount: A:0.68, C:0.04, G:0.05, T:0.23
Consensus pattern (25 bp):
AATAATAATAACAATAAGCAAATGA
Found at i:14691093 original size:12 final size:12
Alignment explanation
Indices: 14691068--14691119 Score: 52
Period size: 12 Copynumber: 4.2 Consensus size: 12
14691058 CAAAACAAAT
14691068 AAATAGATAAAAG
1 AAATAGA-AAAAG
14691081 AAATAGAAAAAG
1 AAATAGAAAAAG
* * *
14691093 AAACAGAGATAG
1 AAATAGAAAAAG
14691105 AAAT-GAAAACAG
1 AAATAGAAAA-AG
14691117 AAA
1 AAA
14691120 GGCAAAGAAA
Statistics
Matches: 32, Mismatches: 6, Indels: 3
0.78 0.15 0.07
Matches are distributed among these distances:
11 3 0.09
12 22 0.69
13 7 0.22
ACGTcount: A:0.69, C:0.04, G:0.17, T:0.10
Consensus pattern (12 bp):
AAATAGAAAAAG
Found at i:14692040 original size:37 final size:38
Alignment explanation
Indices: 14691973--14692044 Score: 101
Period size: 37 Copynumber: 1.9 Consensus size: 38
14691963 GGTGTCAATT
** *
14691973 ATTTACTTTGGATTAATTCGATGAGGCACTGGGTGCCA
1 ATTTACTTTGGATTAAGCCGATGAGACACTGGGTGCCA
*
14692011 ATTTACTTTGG-TTTAGCCGATGAGACACTGGGTG
1 ATTTACTTTGGATTAAGCCGATGAGACACTGGGTG
14692045 TTTGTCAAAT
Statistics
Matches: 30, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
37 19 0.63
38 11 0.37
ACGTcount: A:0.22, C:0.15, G:0.28, T:0.35
Consensus pattern (38 bp):
ATTTACTTTGGATTAAGCCGATGAGACACTGGGTGCCA
Found at i:14695267 original size:12 final size:14
Alignment explanation
Indices: 14695227--14695258 Score: 64
Period size: 14 Copynumber: 2.3 Consensus size: 14
14695217 TCAATAATGG
14695227 CCTCCTTATGCAAA
1 CCTCCTTATGCAAA
14695241 CCTCCTTATGCAAA
1 CCTCCTTATGCAAA
14695255 CCTC
1 CCTC
14695259 TATGAAAACA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.25, C:0.41, G:0.06, T:0.28
Consensus pattern (14 bp):
CCTCCTTATGCAAA
Found at i:14701587 original size:24 final size:23
Alignment explanation
Indices: 14701560--14701613 Score: 63
Period size: 24 Copynumber: 2.3 Consensus size: 23
14701550 TTATTAACAT
14701560 TGTTCGTGAACATGTTCAATTATA
1 TGTTCGTGAACATGTTCAATTA-A
* * **
14701584 TGTTCATGAACGTGTTCGTTTAA
1 TGTTCGTGAACATGTTCAATTAA
14701607 TGTTCGT
1 TGTTCGT
14701614 AAATATTAAA
Statistics
Matches: 25, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
23 7 0.28
24 18 0.72
ACGTcount: A:0.22, C:0.13, G:0.20, T:0.44
Consensus pattern (23 bp):
TGTTCGTGAACATGTTCAATTAA
Found at i:14703908 original size:27 final size:25
Alignment explanation
Indices: 14703860--14703910 Score: 75
Period size: 25 Copynumber: 2.0 Consensus size: 25
14703850 ATTATATATT
*
14703860 AAATATATATTTTTTATTTTTAATC
1 AAATATATATTTTTTATATTTAATC
14703885 AAATATATATTTTATATATATTTAAT
1 AAATATATATTTT-T-TATATTTAAT
14703911 ATGGGCCGGG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 13 0.57
26 1 0.04
27 9 0.39
ACGTcount: A:0.41, C:0.02, G:0.00, T:0.57
Consensus pattern (25 bp):
AAATATATATTTTTTATATTTAATC
Found at i:14705128 original size:25 final size:25
Alignment explanation
Indices: 14705100--14705149 Score: 75
Period size: 25 Copynumber: 2.0 Consensus size: 25
14705090 ATATAGTTTT
*
14705100 TATATTAT-TTATAAATGTTATAATA
1 TATATTATATTAT-AATGTTAAAATA
14705125 TATATTATATTATAATGTTAAAATA
1 TATATTATATTATAATGTTAAAATA
14705150 AAACAAATAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 19 0.83
26 4 0.17
ACGTcount: A:0.46, C:0.00, G:0.04, T:0.50
Consensus pattern (25 bp):
TATATTATATTATAATGTTAAAATA
Found at i:14705628 original size:43 final size:43
Alignment explanation
Indices: 14705555--14705683 Score: 158
Period size: 43 Copynumber: 3.0 Consensus size: 43
14705545 CATAGGATTC
*
14705555 CGATATGTGTTTTCGTGTAAGAC-CTCGTCTGGGACGTTGGCAT
1 CGATATGTGTTTACGTGTAAGACACT-GTCTGGGACGTTGGCAT
14705598 CGACT-TGTGTTTACGTGTAAGACACTGTCTGGGACAG-TGGCAT
1 CGA-TATGTGTTTACGTGTAAGACACTGTCTGGGAC-GTTGGCAT
* * *
14705641 CGATATGTGATTACATGTAAGACCAC-GTCCGGGACGTTGGCAT
1 CGATATGTGTTTACGTGTAAGA-CACTGTCTGGGACGTTGGCAT
14705684 TGTACGAGCC
Statistics
Matches: 76, Mismatches: 4, Indels: 12
0.83 0.04 0.13
Matches are distributed among these distances:
42 2 0.03
43 67 0.88
44 7 0.09
ACGTcount: A:0.21, C:0.19, G:0.29, T:0.30
Consensus pattern (43 bp):
CGATATGTGTTTACGTGTAAGACACTGTCTGGGACGTTGGCAT
Found at i:14708873 original size:71 final size:70
Alignment explanation
Indices: 14708742--14708898 Score: 208
Period size: 71 Copynumber: 2.2 Consensus size: 70
14708732 CAACTCTTAA
* * *
14708742 AACCGAATGTATATTCACTATAAACATGAATAGCCGAATGCTTATATACATATATGCTTAACAAG
1 AACCAAATGTATATACACTATAAACATGAATAGCCGAATGCTTATATACATATA-GCTTAACAAA
14708807 TATTAG
65 TATTAG
** * *
14708813 CTCCAAATGTATATACACTTTGAACATGAATAGCCGAATGCATATATATACATATA-CTTAACAA
1 AACCAAATGTATATACACTATAAACATGAATAGCCGAATGC-T-TATATACATATAGCTTAACAA
*
14708877 ATATTAT
64 ATATTAG
14708884 AACCAAATGTATATA
1 AACCAAATGTATATA
14708899 TGTATTTATC
Statistics
Matches: 74, Mismatches: 10, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
71 61 0.82
72 1 0.01
73 12 0.16
ACGTcount: A:0.43, C:0.16, G:0.10, T:0.31
Consensus pattern (70 bp):
AACCAAATGTATATACACTATAAACATGAATAGCCGAATGCTTATATACATATAGCTTAACAAAT
ATTAG
Found at i:14709544 original size:82 final size:82
Alignment explanation
Indices: 14709362--14709545 Score: 278
Period size: 82 Copynumber: 2.2 Consensus size: 82
14709352 ACCGACAATT
* * *
14709362 AGCCTGTTAGACGTAAAGCCCGAAATATTTCACCGGCATCAAGCCTGCTAGACATAAAGTCTGAA
1 AGCCTGCTAGACGTAAAGTCCAAAATATTTCACCGGCATCAAGCCTGCTAGACATAAAGTCTGAA
*
14709427 ACATTTCACCGGCATCA
66 ACATTTCACCAGCATCA
* * * **
14709444 AGCCTGCTAGACATAAAGTCCAAAATATTTCACTGGCATTAAGCCTGCTAGATGTAAAGTCTGAA
1 AGCCTGCTAGACGTAAAGTCCAAAATATTTCACCGGCATCAAGCCTGCTAGACATAAAGTCTGAA
*
14709509 ACATTTCACCAGCATTA
66 ACATTTCACCAGCATCA
14709526 AGCCTGCTAGACGTAAAGTC
1 AGCCTGCTAGACGTAAAGTC
14709546 TGAATCATCT
Statistics
Matches: 91, Mismatches: 11, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
82 91 1.00
ACGTcount: A:0.34, C:0.24, G:0.18, T:0.24
Consensus pattern (82 bp):
AGCCTGCTAGACGTAAAGTCCAAAATATTTCACCGGCATCAAGCCTGCTAGACATAAAGTCTGAA
ACATTTCACCAGCATCA
Found at i:14709546 original size:41 final size:41
Alignment explanation
Indices: 14709362--14709549 Score: 250
Period size: 41 Copynumber: 4.6 Consensus size: 41
14709352 ACCGACAATT
* * * *
14709362 AGCCTGTTAGACGTAAAGCCCGAAATATTTCACCGGCATCA
1 AGCCTGCTAGACGTAAAGTCTGAAACATTTCACCGGCATCA
*
14709403 AGCCTGCTAGACATAAAGTCTGAAACATTTCACCGGCATCA
1 AGCCTGCTAGACGTAAAGTCTGAAACATTTCACCGGCATCA
* ** * * *
14709444 AGCCTGCTAGACATAAAGTCCAAAATATTTCACTGGCATTA
1 AGCCTGCTAGACGTAAAGTCTGAAACATTTCACCGGCATCA
* * *
14709485 AGCCTGCTAGATGTAAAGTCTGAAACATTTCACCAGCATTA
1 AGCCTGCTAGACGTAAAGTCTGAAACATTTCACCGGCATCA
14709526 AGCCTGCTAGACGTAAAGTCTGAA
1 AGCCTGCTAGACGTAAAGTCTGAA
14709550 TCATCTTACT
Statistics
Matches: 129, Mismatches: 18, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
41 129 1.00
ACGTcount: A:0.34, C:0.24, G:0.18, T:0.24
Consensus pattern (41 bp):
AGCCTGCTAGACGTAAAGTCTGAAACATTTCACCGGCATCA
Found at i:14712904 original size:23 final size:23
Alignment explanation
Indices: 14712878--14712959 Score: 103
Period size: 23 Copynumber: 3.5 Consensus size: 23
14712868 TTAATGTTCA
*
14712878 CGAACATGTTCATTTAAC-TTAAT
1 CGAACATGTTCA-TGAACATTAAT
*
14712901 CGAACATGTTCATGAACATTAAA
1 CGAACATGTTCATGAACATTAAT
*
14712924 CAAACATGTTCATGAACATATAAT
1 CGAACATGTTCATGAACAT-TAAT
*
14712948 TGAACATGTTCA
1 CGAACATGTTCA
14712960 CGAATAATGT
Statistics
Matches: 51, Mismatches: 6, Indels: 3
0.85 0.10 0.05
Matches are distributed among these distances:
22 4 0.08
23 34 0.67
24 13 0.25
ACGTcount: A:0.40, C:0.17, G:0.11, T:0.32
Consensus pattern (23 bp):
CGAACATGTTCATGAACATTAAT
Found at i:14716439 original size:2 final size:2
Alignment explanation
Indices: 14716432--14716457 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
14716422 TTAATAAAAT
14716432 TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA
14716458 CATACACATT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:14717381 original size:42 final size:42
Alignment explanation
Indices: 14717295--14717372 Score: 115
Period size: 42 Copynumber: 1.9 Consensus size: 42
14717285 TAAATGTTAG
* *
14717295 TTTGAATACAAATAAATATAATTTTTCTTAAAAAAATAAATA
1 TTTGAATACAAATAAATATAATTTATCTGAAAAAAATAAATA
*
14717337 TTTGAATACAAATAAATATCA-TTAT-TGAAAAAAATA
1 TTTGAATACAAATAAATATAATTTATCTGAAAAAAATA
14717373 TTATTATTTA
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
40 10 0.30
41 3 0.09
42 20 0.61
ACGTcount: A:0.55, C:0.05, G:0.04, T:0.36
Consensus pattern (42 bp):
TTTGAATACAAATAAATATAATTTATCTGAAAAAAATAAATA
Found at i:14724460 original size:20 final size:21
Alignment explanation
Indices: 14724426--14724466 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 21
14724416 GACCGAAAGG
14724426 CTGTTCGGATCTCTG-CACAT
1 CTGTTCGGATCTCTGTCACAT
* *
14724446 CTGTTCGGTTTTCTGTCACAT
1 CTGTTCGGATCTCTGTCACAT
14724467 TTTATATAGG
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 13 0.72
21 5 0.28
ACGTcount: A:0.12, C:0.27, G:0.20, T:0.41
Consensus pattern (21 bp):
CTGTTCGGATCTCTGTCACAT
Found at i:14728281 original size:2 final size:2
Alignment explanation
Indices: 14728274--14728299 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
14728264 TGTCATACAT
14728274 TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA
14728300 CCATTTGCAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:14732215 original size:19 final size:19
Alignment explanation
Indices: 14732193--14732229 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
14732183 TCTCGAAAAT
*
14732193 TGACCAAATTACCATTTTA
1 TGACAAAATTACCATTTTA
14732212 TGACAAAATTACCATTTT
1 TGACAAAATTACCATTTT
14732230 GCCCCACCTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.38, C:0.19, G:0.05, T:0.38
Consensus pattern (19 bp):
TGACAAAATTACCATTTTA
Found at i:14733567 original size:3 final size:3
Alignment explanation
Indices: 14733559--14733595 Score: 74
Period size: 3 Copynumber: 12.3 Consensus size: 3
14733549 TCTTTATTAA
14733559 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG A
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG A
14733596 TATTGCTGCC
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 34 1.00
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:14758952 original size:42 final size:42
Alignment explanation
Indices: 14758875--14759121 Score: 363
Period size: 42 Copynumber: 5.9 Consensus size: 42
14758865 ACCGACACTT
* *
14758875 AGCCTGCTAGACATATAGTCTGAAA-TGTTTCACCGGCATTA
1 AGCCTGCTAGACGTAAAGTCTGAAATTGTTTCACCGGCATTA
* * * *
14758916 AGCCTCCTAGACGTAAAGCCTGATATTGTTTCACCGGTATTA
1 AGCCTGCTAGACGTAAAGTCTGAAATTGTTTCACCGGCATTA
*
14758958 AGCCTGCTAGACGTAAAGTCTGAAATTATTTCACCGGCATTA
1 AGCCTGCTAGACGTAAAGTCTGAAATTGTTTCACCGGCATTA
* * *
14759000 AGCCTGCTAGACGTAAAGTCTGATATTGTTTCACAGACATTA
1 AGCCTGCTAGACGTAAAGTCTGAAATTGTTTCACCGGCATTA
*
14759042 AGCCTGCTAGACGTAAAGTCTGAAATTATTTCACCGGCATTA
1 AGCCTGCTAGACGTAAAGTCTGAAATTGTTTCACCGGCATTA
* *
14759084 AGTCTGCTAGACGTAAAGTCTGAAA-TGTTTCACTGGCA
1 AGCCTGCTAGACGTAAAGTCTGAAATTGTTTCACCGGCA
14759122 ATAAACCTCA
Statistics
Matches: 183, Mismatches: 22, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
41 31 0.17
42 152 0.83
ACGTcount: A:0.30, C:0.21, G:0.20, T:0.30
Consensus pattern (42 bp):
AGCCTGCTAGACGTAAAGTCTGAAATTGTTTCACCGGCATTA
Found at i:14759495 original size:2 final size:2
Alignment explanation
Indices: 14759488--14759521 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
14759478 ATTACAGAAC
14759488 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
14759522 TTGCATATTT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:14759695 original size:12 final size:12
Alignment explanation
Indices: 14759674--14759704 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
14759664 AATCTTAAGT
*
14759674 ACACACACACAC
1 ACACATACACAC
14759686 ACACATACACAC
1 ACACATACACAC
14759698 ACACATA
1 ACACATA
14759705 TACCTTTTAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.52, C:0.42, G:0.00, T:0.06
Consensus pattern (12 bp):
ACACATACACAC
Found at i:14759697 original size:14 final size:14
Alignment explanation
Indices: 14759678--14759707 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
14759668 TTAAGTACAC
14759678 ACACACACACACAT
1 ACACACACACACAT
*
14759692 ACACACACACATAT
1 ACACACACACACAT
14759706 AC
1 AC
14759708 CTTTTATTAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.50, C:0.40, G:0.00, T:0.10
Consensus pattern (14 bp):
ACACACACACACAT
Found at i:14770146 original size:2 final size:2
Alignment explanation
Indices: 14770139--14770169 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
14770129 ATTTTAAATT
*
14770139 TA TA TA TA TA TA TA TA TG TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
14770170 CTCATTTTCT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.45, C:0.00, G:0.03, T:0.52
Consensus pattern (2 bp):
TA
Done.