Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr09 ID=Chr09-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 70713020
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 1142373 characters in sequence are not A, C, G, or T
File 53 of 226
Found at i:21585395 original size:21 final size:20
Alignment explanation
Indices: 21585369--21585458 Score: 81
Period size: 21 Copynumber: 4.3 Consensus size: 20
21585359 ATATTGCATC
21585369 ATTATTATTGTATTATTATTT
1 ATTATTATTGTATTATTA-TT
* *
21585390 ATTATTATTATAGTAGTTATT
1 ATTATTATTGTATTA-TTATT
* *
21585411 ATTATTATTACTATTCTTATT
1 ATTATTATT-GTATTATTATT
** *
21585432 GCTATTAATGATATTATTATT
1 ATTATTATTG-TATTATTATT
21585453 ATTATT
1 ATTATT
21585459 TATATATATT
Statistics
Matches: 54, Mismatches: 12, Indels: 6
0.75 0.17 0.08
Matches are distributed among these distances:
21 48 0.89
22 6 0.11
ACGTcount: A:0.31, C:0.03, G:0.06, T:0.60
Consensus pattern (20 bp):
ATTATTATTGTATTATTATT
Found at i:21585463 original size:18 final size:19
Alignment explanation
Indices: 21585369--21585469 Score: 64
Period size: 21 Copynumber: 5.1 Consensus size: 19
21585359 ATATTGCATC
*
21585369 ATTATTATTGTATTATTATTT
1 ATTATTATT-TACTATTA-TT
*
21585390 ATTATTATTATAGTAGTTATT
1 ATTATTATT-TACTA-TTATT
*
21585411 ATTATTA-TTACTATTCTT
1 ATTATTATTTACTATTATT
* *
21585429 ATTGCTATTAATGA-TATTATT
1 A-T--TATTATTTACTATTATT
21585450 ATTATTATTTA-TATATATT
1 ATTATTATTTACTAT-TATT
21585469 A
1 A
21585470 ATTTACTTAA
Statistics
Matches: 66, Mismatches: 8, Indels: 14
0.75 0.09 0.16
Matches are distributed among these distances:
18 15 0.23
19 10 0.15
20 2 0.03
21 34 0.52
22 5 0.08
ACGTcount: A:0.33, C:0.03, G:0.05, T:0.59
Consensus pattern (19 bp):
ATTATTATTTACTATTATT
Found at i:21585768 original size:2 final size:2
Alignment explanation
Indices: 21585761--21585793 Score: 59
Period size: 2 Copynumber: 17.0 Consensus size: 2
21585751 TACATAGTAT
21585761 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T- TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
21585794 ATTTATATCG
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 29 0.97
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:21591650 original size:19 final size:19
Alignment explanation
Indices: 21591623--21591661 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 19
21591613 GATTATAATA
*
21591623 TAATTTTTAAAATTTGAAT
1 TAATATTTAAAATTTGAAT
21591642 TAATATTTAAAATTTGAAT
1 TAATATTTAAAATTTGAAT
21591661 T
1 T
21591662 TCCTTTCAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.44, C:0.00, G:0.05, T:0.51
Consensus pattern (19 bp):
TAATATTTAAAATTTGAAT
Found at i:21596017 original size:16 final size:16
Alignment explanation
Indices: 21595996--21596029 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
21595986 ATACGAGAGA
21595996 TTACCAAAATTCTGCT
1 TTACCAAAATTCTGCT
21596012 TTACCAAAATTCTGCT
1 TTACCAAAATTCTGCT
21596028 TT
1 TT
21596030 GGTTGTGGCA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.29, C:0.24, G:0.06, T:0.41
Consensus pattern (16 bp):
TTACCAAAATTCTGCT
Found at i:21599903 original size:22 final size:22
Alignment explanation
Indices: 21599875--21600027 Score: 225
Period size: 22 Copynumber: 7.0 Consensus size: 22
21599865 TTTATTGTTC
*
21599875 AAACATGAGAGCTTAGTACGTG
1 AAACATGAGAGCTTAGTACGTT
21599897 AAACATGAGAGCTTAGTACGTT
1 AAACATGAGAGCTTAGTACGTT
**
21599919 AGCCATGAGAGCTTAGTACGTT
1 AAACATGAGAGCTTAGTACGTT
** * * *
21599941 AGCCATGAGGGTTTAGTTCGTT
1 AAACATGAGAGCTTAGTACGTT
21599963 AAACATGAGAGCTTAGTACGTT
1 AAACATGAGAGCTTAGTACGTT
*
21599985 AAACATGAGAGCTTAGTACGTG
1 AAACATGAGAGCTTAGTACGTT
21600007 AAACATGAGAGCTTAGTACGT
1 AAACATGAGAGCTTAGTACGT
21600028 ACTATCAACA
Statistics
Matches: 119, Mismatches: 12, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 119 1.00
ACGTcount: A:0.33, C:0.14, G:0.26, T:0.27
Consensus pattern (22 bp):
AAACATGAGAGCTTAGTACGTT
Found at i:21600978 original size:15 final size:16
Alignment explanation
Indices: 21600948--21600980 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
21600938 GGTTCCAGAA
*
21600948 CTCTCTTTTTTCATAT
1 CTCTCTTTTTTAATAT
21600964 CTCTC-TTTTTAATAT
1 CTCTCTTTTTTAATAT
21600979 CT
1 CT
21600981 TGATTTTTTC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 11 0.69
16 5 0.31
ACGTcount: A:0.15, C:0.24, G:0.00, T:0.61
Consensus pattern (16 bp):
CTCTCTTTTTTAATAT
Found at i:21621359 original size:76 final size:72
Alignment explanation
Indices: 21621098--21621356 Score: 285
Period size: 69 Copynumber: 3.5 Consensus size: 72
21621088 TTTTTGGTAA
* * * *
21621098 ATTGTAAATAAGTATATATCATTGATGTAAAGTACAATAAAATACAATATAAACAATTTTTCATA
1 ATTGTAAATAAGTATAT-T-ATTGATGTAAAATACAATAAAATACAATACAAACAATTTTTTATT
21621163 TTTTT-T--
64 TTTTTCTAG
* * *
21621169 ATTGTAAATAAGTATATTATTGA-G-AAGACATGCGATAAAATACAATACAAATAATTTTTTATT
1 ATTGTAAATAAGTATATTATTGATGTAA-A-ATACAATAAAATACAATACAAACAATTTTTTATT
21621232 TTTTTCTTAG
64 TTTTTC-TAG
* * * *
21621242 ATTGTAAATAAGTATATATTATTAATATAAAATACAATAGAATACAAAACAAACAATTTTTTTAA
1 ATTGTAAATAAG--TATATTATTGATGTAAAATACAATAAAATACAATACAAACAA-TTTTTT--
21621307 ATTTTTTTCATAG
61 ATTTTTTTC-TAG
21621320 ATTGTAAATAAGTATATTATTGATGTAAAATACAATA
1 ATTGTAAATAAGTATATTATTGATGTAAAATACAATA
21621357 GAAAATCTTT
Statistics
Matches: 158, Mismatches: 17, Indels: 21
0.81 0.09 0.11
Matches are distributed among these distances:
67 2 0.01
68 2 0.01
69 37 0.23
70 1 0.01
71 18 0.11
73 12 0.08
75 30 0.19
76 30 0.19
77 2 0.01
78 24 0.15
ACGTcount: A:0.46, C:0.06, G:0.08, T:0.40
Consensus pattern (72 bp):
ATTGTAAATAAGTATATTATTGATGTAAAATACAATAAAATACAATACAAACAATTTTTTATTTT
TTTCTAG
Found at i:21624833 original size:9 final size:9
Alignment explanation
Indices: 21624819--21624903 Score: 109
Period size: 9 Copynumber: 9.4 Consensus size: 9
21624809 TTTGGTTAAA
*
21624819 AATTAACTG
1 AATTAACCG
21624828 AATTAACCG
1 AATTAACCG
*
21624837 AATTACCCG
1 AATTAACCG
*
21624846 AATTAACTG
1 AATTAACCG
21624855 AATTAACCG
1 AATTAACCG
* *
21624864 GATTACCCG
1 AATTAACCG
21624873 AATTAACCG
1 AATTAACCG
21624882 AATT-ACCTG
1 AATTAACC-G
21624891 AATTAACCG
1 AATTAACCG
21624900 AATT
1 AATT
21624904 GAATCACTAC
Statistics
Matches: 65, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
8 3 0.05
9 59 0.91
10 3 0.05
ACGTcount: A:0.40, C:0.21, G:0.12, T:0.27
Consensus pattern (9 bp):
AATTAACCG
Found at i:21624857 original size:27 final size:27
Alignment explanation
Indices: 21624819--21624903 Score: 127
Period size: 27 Copynumber: 3.1 Consensus size: 27
21624809 TTTGGTTAAA
21624819 AATTAACTGAATTAACCGAATTACCCG
1 AATTAACTGAATTAACCGAATTACCCG
*
21624846 AATTAACTGAATTAACCGGATTACCCG
1 AATTAACTGAATTAACCGAATTACCCG
* *
21624873 AATTAACCGAATT-ACCTGAATTAACCG
1 AATTAACTGAATTAACC-GAATTACCCG
21624900 AATT
1 AATT
21624904 GAATCACTAC
Statistics
Matches: 53, Mismatches: 4, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
26 3 0.06
27 50 0.94
ACGTcount: A:0.40, C:0.21, G:0.12, T:0.27
Consensus pattern (27 bp):
AATTAACTGAATTAACCGAATTACCCG
Found at i:21629088 original size:2 final size:2
Alignment explanation
Indices: 21629081--21629109 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
21629071 CAACAAGAGG
21629081 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
21629110 CAAGAGAAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:21635874 original size:13 final size:13
Alignment explanation
Indices: 21635853--21635907 Score: 51
Period size: 13 Copynumber: 4.3 Consensus size: 13
21635843 TTAAAGTTAG
*
21635853 ATTATTATATTAT
1 ATTAGTATATTAT
*
21635866 ATTAGTATATTTT
1 ATTAGTATATTAT
* *
21635879 ATTTATTATTTTA-
1 A-TTAGTATATTAT
21635892 ATTAG-ATATTAT
1 ATTAGTATATTAT
21635904 ATTA
1 ATTA
21635908 AGAAAGATGA
Statistics
Matches: 33, Mismatches: 7, Indels: 5
0.73 0.16 0.11
Matches are distributed among these distances:
11 5 0.15
12 7 0.21
13 13 0.39
14 8 0.24
ACGTcount: A:0.36, C:0.00, G:0.04, T:0.60
Consensus pattern (13 bp):
ATTAGTATATTAT
Found at i:21637050 original size:13 final size:11
Alignment explanation
Indices: 21637016--21637054 Score: 53
Period size: 11 Copynumber: 3.5 Consensus size: 11
21637006 TCAAACATTA
21637016 TTTCT-TCAAT
1 TTTCTCTCAAT
21637026 TTTCTCTCAAT
1 TTTCTCTCAAT
*
21637037 TTTCTCTCTAAA
1 TTTCTCTC-AAT
21637049 TTTCTC
1 TTTCTC
21637055 AAAGCTCTCT
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
10 5 0.19
11 13 0.50
12 8 0.31
ACGTcount: A:0.18, C:0.26, G:0.00, T:0.56
Consensus pattern (11 bp):
TTTCTCTCAAT
Found at i:21638844 original size:18 final size:18
Alignment explanation
Indices: 21638821--21638863 Score: 68
Period size: 18 Copynumber: 2.4 Consensus size: 18
21638811 TGTCAGGTGC
*
21638821 GTATCCTAGCCCTTATAT
1 GTATCCTAACCCTTATAT
21638839 GTATCCTAACCCTTATAT
1 GTATCCTAACCCTTATAT
*
21638857 GTTTCCT
1 GTATCCT
21638864 TTTCCCAGTC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.21, C:0.28, G:0.09, T:0.42
Consensus pattern (18 bp):
GTATCCTAACCCTTATAT
Found at i:21642507 original size:126 final size:125
Alignment explanation
Indices: 21642342--21642611 Score: 353
Period size: 126 Copynumber: 2.2 Consensus size: 125
21642332 GACCAAACAA
* *
21642342 GAACTACTGTAGAAAAAGAGCGTCCACGTGGGAACTTTTTTCAGTAATTTTGCTAACATTGCATC
1 GAACTACTGTAGAAAAAAAGCGTCCACGTGGGAACTTTTTTCAGTAATTTTGCTAACAGTGCATC
*
21642407 CTACTTGAAGCAATTTTGACACTATTTGTTCAGAATCATCTTCTCAAAAATATTTTTTCAG
66 CTACTTGAAGCAATTTTGACACTATTTGTTCAGAACCATCTTCTCAAAAATA-TTTTTCAG
* ** * *
21642468 GAACTACTGTAGAAAAAAAGTG-CCTACGTGGGAGTTTTTTTCAGTAATTTTGTTGACAGTGCAT
1 GAACTACTGTAGAAAAAAAGCGTCC-ACGTGGGAACTTTTTTCAGTAATTTTGCTAACAGTGCAT
* ** * * * * * *
21642532 CCTGCTTGAAGCGTTTTTTACATTATTTTTTCAGAACCGTCTTCTCAAAATTATTTTTCAT
65 CCTACTTGAAGCAATTTTGACACTATTTGTTCAGAACCATCTTCTCAAAAATATTTTTCAG
*
21642593 AAACTACTGTAGAAAAAAA
1 GAACTACTGTAGAAAAAAA
21642612 CAAAAGTTTT
Statistics
Matches: 125, Mismatches: 18, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
125 27 0.22
126 98 0.78
ACGTcount: A:0.31, C:0.17, G:0.16, T:0.37
Consensus pattern (125 bp):
GAACTACTGTAGAAAAAAAGCGTCCACGTGGGAACTTTTTTCAGTAATTTTGCTAACAGTGCATC
CTACTTGAAGCAATTTTGACACTATTTGTTCAGAACCATCTTCTCAAAAATATTTTTCAG
Found at i:21642717 original size:34 final size:34
Alignment explanation
Indices: 21642679--21642770 Score: 107
Period size: 34 Copynumber: 2.7 Consensus size: 34
21642669 TTAAAAAAAA
*
21642679 CTAAACCATAATTTAATTAATTT-TCTTAAAA-ACC
1 CTAAACC-TAATTTAATTTATTTAT-TTAAAATACC
*
21642713 CTAAACCTTAATTTAATTTATTTATTTAAAATTCC
1 CTAAACC-TAATTTAATTTATTTATTTAAAATACC
**
21642748 AAAAACCTAATTTAATTTATTTA
1 CTAAACCTAATTTAATTTATTTA
21642771 AAAAAAACCT
Statistics
Matches: 51, Mismatches: 5, Indels: 4
0.85 0.08 0.07
Matches are distributed among these distances:
34 43 0.84
35 8 0.16
ACGTcount: A:0.42, C:0.14, G:0.00, T:0.43
Consensus pattern (34 bp):
CTAAACCTAATTTAATTTATTTATTTAAAATACC
Found at i:21642819 original size:15 final size:15
Alignment explanation
Indices: 21642799--21642829 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
21642789 AACCTACCAA
21642799 AAACCAAAAAACCCT
1 AAACCAAAAAACCCT
21642814 AAACCAAAAAACCCT
1 AAACCAAAAAACCCT
21642829 A
1 A
21642830 GGGACTAATA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.61, C:0.32, G:0.00, T:0.06
Consensus pattern (15 bp):
AAACCAAAAAACCCT
Found at i:21644053 original size:21 final size:21
Alignment explanation
Indices: 21644000--21644098 Score: 107
Period size: 21 Copynumber: 4.8 Consensus size: 21
21643990 TAGTGTTACG
*
21644000 ACATCAAAAGCCAATGTT-GC
1 ACATCAGAAGCCAATGTTGGC
*
21644020 ACA-CTAGAAGCCAATGTTGGT
1 ACATC-AGAAGCCAATGTTGGC
* *
21644041 ACATCATAAGCCAATG-TCGC
1 ACATCAGAAGCCAATGTTGGC
*
21644061 ACA-CTAGAAGCCAATGTTGGG
1 ACATC-AGAAGCCAATGTTGGC
21644082 ACATCAGAAGCCAATGT
1 ACATCAGAAGCCAATGT
21644099 CACAACATTA
Statistics
Matches: 65, Mismatches: 8, Indels: 11
0.77 0.10 0.13
Matches are distributed among these distances:
19 2 0.03
20 30 0.46
21 31 0.48
22 2 0.03
ACGTcount: A:0.36, C:0.23, G:0.20, T:0.20
Consensus pattern (21 bp):
ACATCAGAAGCCAATGTTGGC
Found at i:21644057 original size:41 final size:41
Alignment explanation
Indices: 21643999--21644099 Score: 166
Period size: 41 Copynumber: 2.5 Consensus size: 41
21643989 CTAGTGTTAC
*
21643999 GACATCAAAAGCCAATGTTGCACACTAGAAGCCAATGTTGG
1 GACATCAAAAGCCAATGTCGCACACTAGAAGCCAATGTTGG
* *
21644040 TACATCATAAGCCAATGTCGCACACTAGAAGCCAATGTTGG
1 GACATCAAAAGCCAATGTCGCACACTAGAAGCCAATGTTGG
*
21644081 GACATCAGAAGCCAATGTC
1 GACATCAAAAGCCAATGTC
21644100 ACAACATTAG
Statistics
Matches: 55, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
41 55 1.00
ACGTcount: A:0.36, C:0.24, G:0.21, T:0.20
Consensus pattern (41 bp):
GACATCAAAAGCCAATGTCGCACACTAGAAGCCAATGTTGG
Found at i:21645652 original size:37 final size:37
Alignment explanation
Indices: 21645454--21645649 Score: 347
Period size: 37 Copynumber: 5.3 Consensus size: 37
21645444 GATTTGTACT
** *
21645454 TCTGATCAAGTGACAAAGTGATAAGTGGCTACACTTA
1 TCTGATCAAGAAACAAAGTGATAAGTGGTTACACTTA
21645491 TCTGATCAAGAAACAAAGTGATAAGTGGTTACACTTA
1 TCTGATCAAGAAACAAAGTGATAAGTGGTTACACTTA
*
21645528 TCTGATCAAGAAACAAAGTGATAAGTGGCTACACTTA
1 TCTGATCAAGAAACAAAGTGATAAGTGGTTACACTTA
21645565 TCTGATCAAGAAACAAAGTGATAAGTGGTTACACTTA
1 TCTGATCAAGAAACAAAGTGATAAGTGGTTACACTTA
*
21645602 TCTGATCAAGAGACAAAGTGATAAGTGGTTACACTTA
1 TCTGATCAAGAAACAAAGTGATAAGTGGTTACACTTA
21645639 TCTGATCAAGA
1 TCTGATCAAGA
21645650 GACNNNNNNN
Statistics
Matches: 153, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 153 1.00
ACGTcount: A:0.39, C:0.15, G:0.20, T:0.27
Consensus pattern (37 bp):
TCTGATCAAGAAACAAAGTGATAAGTGGTTACACTTA
Found at i:21645839 original size:45 final size:45
Alignment explanation
Indices: 21645756--21645855 Score: 159
Period size: 45 Copynumber: 2.2 Consensus size: 45
21645746 NNNNNNNGAT
* *
21645756 AAAGTGATAAGTGGTAGCTTCAGCTACACTTATCTGATCAAGTGGC
1 AAAGTGATAAGTGGTAGCCTCAGCTACACTTATCTGATCAA-TGAC
21645802 AAAGTGATAAGTGGTAGCCT-AGCTACACTTATCTGATCAATGAC
1 AAAGTGATAAGTGGTAGCCTCAGCTACACTTATCTGATCAATGAC
21645846 -AAGTGATAAG
1 AAAGTGATAAG
21645856 AGGTCATATG
Statistics
Matches: 52, Mismatches: 2, Indels: 3
0.91 0.04 0.05
Matches are distributed among these distances:
43 10 0.19
44 3 0.06
45 20 0.38
46 19 0.37
ACGTcount: A:0.34, C:0.16, G:0.23, T:0.27
Consensus pattern (45 bp):
AAAGTGATAAGTGGTAGCCTCAGCTACACTTATCTGATCAATGAC
Found at i:21648014 original size:23 final size:23
Alignment explanation
Indices: 21647961--21648033 Score: 74
Period size: 23 Copynumber: 3.2 Consensus size: 23
21647951 GAAGTGCTAG
* ** *
21647961 AATGAATTGCACCGTAGTACCAG
1 AATGAATTGCACCGAAGTGTCAA
* *
21647984 AATAAATTGCACCAAAGTGTCAA
1 AATGAATTGCACCGAAGTGTCAA
**
21648007 AATGAATTGCATTGAAGTGTCAA
1 AATGAATTGCACCGAAGTGTCAA
21648030 AATG
1 AATG
21648034 CTCCCACCAA
Statistics
Matches: 40, Mismatches: 10, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
23 40 1.00
ACGTcount: A:0.41, C:0.15, G:0.19, T:0.25
Consensus pattern (23 bp):
AATGAATTGCACCGAAGTGTCAA
Found at i:21652992 original size:94 final size:94
Alignment explanation
Indices: 21652831--21653018 Score: 340
Period size: 94 Copynumber: 2.0 Consensus size: 94
21652821 TAATCAAGTC
* * *
21652831 AATTTGACTTTTCATATGTTAAAGGAGTTTAGTGGTCCAAAAAGAAAAATAAATGAAGCATTATG
1 AATTTGACTTTTCACATGTAAAAGGAGTTTAGTGGTCCAAAAAGAAAAACAAATGAAGCATTATG
21652896 GGCTTGACCAATTTGCATCCTTCAATGCT
66 GGCTTGACCAATTTGCATCCTTCAATGCT
21652925 AATTTGACTTTTCACATGTAAAAGGAGTTTAGTGGTCCAAAAAGAAAAACAAATGAAGCATTATG
1 AATTTGACTTTTCACATGTAAAAGGAGTTTAGTGGTCCAAAAAGAAAAACAAATGAAGCATTATG
*
21652990 GGCTTGACCAATTTGCATCCTTTAATGCT
66 GGCTTGACCAATTTGCATCCTTCAATGCT
21653019 TTCTCCACAC
Statistics
Matches: 90, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
94 90 1.00
ACGTcount: A:0.36, C:0.14, G:0.18, T:0.32
Consensus pattern (94 bp):
AATTTGACTTTTCACATGTAAAAGGAGTTTAGTGGTCCAAAAAGAAAAACAAATGAAGCATTATG
GGCTTGACCAATTTGCATCCTTCAATGCT
Found at i:21657491 original size:6 final size:6
Alignment explanation
Indices: 21657480--21657508 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
21657470 AACCCAACCC
21657480 AAAAAT AAAAAT AAAAAT AAAAAT AAAAA
1 AAAAAT AAAAAT AAAAAT AAAAAT AAAAA
21657509 CTTTTAATTA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.86, C:0.00, G:0.00, T:0.14
Consensus pattern (6 bp):
AAAAAT
Found at i:21658278 original size:15 final size:15
Alignment explanation
Indices: 21658258--21658291 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
21658248 CTTTCATACC
21658258 TTTTTTTGTTCTT-TT
1 TTTTTTTGTT-TTGTT
21658273 TTTTTTTGTTTTGTT
1 TTTTTTTGTTTTGTT
21658288 TTTT
1 TTTT
21658292 ACTCAAAATA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 2 0.11
15 16 0.89
ACGTcount: A:0.00, C:0.03, G:0.09, T:0.88
Consensus pattern (15 bp):
TTTTTTTGTTTTGTT
Found at i:21658622 original size:21 final size:18
Alignment explanation
Indices: 21658575--21658625 Score: 59
Period size: 20 Copynumber: 2.7 Consensus size: 18
21658565 ATTTTTTTAG
21658575 TTTT-TATTTTATTTTGT
1 TTTTCTATTTTATTTTGT
*
21658592 TTTTCCATTTTCATATTTGT
1 TTTTCTATTTT-AT-TTTGT
21658612 TTTCTCTATTTTAT
1 TTT-TCTATTTTAT
21658626 GTTTCTCTCC
Statistics
Matches: 28, Mismatches: 2, Indels: 5
0.80 0.06 0.14
Matches are distributed among these distances:
17 4 0.14
18 5 0.18
19 2 0.07
20 10 0.36
21 7 0.25
ACGTcount: A:0.14, C:0.10, G:0.04, T:0.73
Consensus pattern (18 bp):
TTTTCTATTTTATTTTGT
Found at i:21659491 original size:26 final size:28
Alignment explanation
Indices: 21659439--21659501 Score: 76
Period size: 26 Copynumber: 2.3 Consensus size: 28
21659429 TTTAAAATAC
* * *
21659439 TTTTAAAATAATTTTTTTATTTTTTTAT
1 TTTTAAAATAATATTTTTATATGTTTAT
21659467 TTTTAAAATAA-ATTTTTA-ATGTTTAT
1 TTTTAAAATAATATTTTTATATGTTTAT
*
21659493 TTTAAAAAT
1 TTTTAAAAT
21659502 GGGCCGGGCC
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
26 14 0.45
27 6 0.19
28 11 0.35
ACGTcount: A:0.37, C:0.00, G:0.02, T:0.62
Consensus pattern (28 bp):
TTTTAAAATAATATTTTTATATGTTTAT
Found at i:21661906 original size:19 final size:20
Alignment explanation
Indices: 21661863--21661923 Score: 61
Period size: 20 Copynumber: 3.0 Consensus size: 20
21661853 ATGTCACATC
* *
21661863 AAAAAATAATTTAAAAACTA
1 AAAAAATAATTCAAAAAATA
*
21661883 TAAAAAT-ATTCAAAAAATAA
1 AAAAAATAATTCAAAAAAT-A
*
21661903 AAAAAATCAATTTAAAAAATA
1 AAAAAAT-AATTCAAAAAATA
21661924 TTTAAAAAAA
Statistics
Matches: 33, Mismatches: 5, Indels: 5
0.77 0.12 0.12
Matches are distributed among these distances:
19 9 0.27
20 13 0.39
21 1 0.03
22 10 0.30
ACGTcount: A:0.70, C:0.05, G:0.00, T:0.25
Consensus pattern (20 bp):
AAAAAATAATTCAAAAAATA
Found at i:21661921 original size:13 final size:11
Alignment explanation
Indices: 21661863--21661932 Score: 51
Period size: 11 Copynumber: 6.5 Consensus size: 11
21661853 ATGTCACATC
21661863 AAAAAATAATTT
1 AAAAAAT-ATTT
*
21661875 AAAAACTA--T
1 AAAAAATATTT
*
21661884 -AAAAATATTC
1 AAAAAATATTT
*
21661894 AAAAAATA--A
1 AAAAAATATTT
21661903 AAAAAATCAATTT
1 AAAAAAT--ATTT
21661916 AAAAAATATTT
1 AAAAAATATTT
21661927 AAAAAA
1 AAAAAA
21661933 AAATGATTTA
Statistics
Matches: 46, Mismatches: 5, Indels: 15
0.70 0.08 0.23
Matches are distributed among these distances:
8 6 0.13
9 8 0.17
11 19 0.41
12 6 0.13
13 7 0.15
ACGTcount: A:0.70, C:0.04, G:0.00, T:0.26
Consensus pattern (11 bp):
AAAAAATATTT
Found at i:21677266 original size:25 final size:24
Alignment explanation
Indices: 21677238--21677297 Score: 57
Period size: 25 Copynumber: 2.4 Consensus size: 24
21677228 TAAAGAACTA
* *
21677238 AATATATAAATTATTTTTATATGT
1 AATATATAAATTATTTGTATATAT
* * *
21677262 GAATAAATATAATTGTTTGTGTATAT
1 -AATATATA-AATTATTTGTATATAT
21677288 AATATATAAA
1 AATATATAAA
21677298 CATTAAATGA
Statistics
Matches: 28, Mismatches: 6, Indels: 3
0.76 0.16 0.08
Matches are distributed among these distances:
24 2 0.07
25 14 0.50
26 12 0.43
ACGTcount: A:0.45, C:0.00, G:0.08, T:0.47
Consensus pattern (24 bp):
AATATATAAATTATTTGTATATAT
Found at i:21684256 original size:3 final size:3
Alignment explanation
Indices: 21684248--21684285 Score: 76
Period size: 3 Copynumber: 12.7 Consensus size: 3
21684238 TCTATCTACT
21684248 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TT
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TT
21684286 TAATCTTGCT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 35 1.00
ACGTcount: A:0.00, C:0.32, G:0.00, T:0.68
Consensus pattern (3 bp):
TTC
Found at i:21690073 original size:4 final size:4
Alignment explanation
Indices: 21690064--21690090 Score: 54
Period size: 4 Copynumber: 6.8 Consensus size: 4
21690054 GGCAATTATA
21690064 AAAG AAAG AAAG AAAG AAAG AAAG AAA
1 AAAG AAAG AAAG AAAG AAAG AAAG AAA
21690091 ATACTGACAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 23 1.00
ACGTcount: A:0.78, C:0.00, G:0.22, T:0.00
Consensus pattern (4 bp):
AAAG
Found at i:21691308 original size:11 final size:11
Alignment explanation
Indices: 21691292--21691316 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
21691282 ATAAAAACTT
21691292 TTTTTAATATA
1 TTTTTAATATA
21691303 TTTTTAATATA
1 TTTTTAATATA
21691314 TTT
1 TTT
21691317 ATTTTAATGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (11 bp):
TTTTTAATATA
Found at i:21697775 original size:30 final size:27
Alignment explanation
Indices: 21697739--21697812 Score: 85
Period size: 29 Copynumber: 2.5 Consensus size: 27
21697729 AACAGAAAGG
21697739 GACCAAAAAAAACATATCGATTAGTTGGGT
1 GACCAAAAAAAA-A-ATCGA-TAGTTGGGT
*
21697769 GACCAAATTAAAAAAATTGATAGTTGGGT
1 GACCAAA--AAAAAAATCGATAGTTGGGT
21697798 GACCAAAAAAGAAAA
1 GACCAAAAAA-AAAA
21697813 AAGACACTAG
Statistics
Matches: 40, Mismatches: 1, Indels: 8
0.82 0.02 0.16
Matches are distributed among these distances:
27 3 0.08
28 4 0.10
29 16 0.40
30 11 0.28
31 1 0.03
32 5 0.12
ACGTcount: A:0.50, C:0.11, G:0.19, T:0.20
Consensus pattern (27 bp):
GACCAAAAAAAAAATCGATAGTTGGGT
Found at i:21700693 original size:2 final size:2
Alignment explanation
Indices: 21700686--21700720 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
21700676 CTAAAATTAA
21700686 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
21700721 AATTCTTAAT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:21711222 original size:32 final size:34
Alignment explanation
Indices: 21711158--21711224 Score: 93
Period size: 34 Copynumber: 2.0 Consensus size: 34
21711148 TTAGACATTT
* *
21711158 AGTATTTATATAATAAATATTTTTTTTATTTTAA
1 AGTATTTATAAAATAAATATTTTTTATATTTTAA
*
21711192 AGTATTTTTAAAATAAAT-TTTTTTAT-TTTTAA
1 AGTATTTATAAAATAAATATTTTTTATATTTTAA
21711224 A
1 A
21711225 ATACATTTCC
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
32 7 0.23
33 7 0.23
34 16 0.53
ACGTcount: A:0.39, C:0.00, G:0.03, T:0.58
Consensus pattern (34 bp):
AGTATTTATAAAATAAATATTTTTTATATTTTAA
Found at i:21736872 original size:41 final size:41
Alignment explanation
Indices: 21736785--21736882 Score: 115
Period size: 41 Copynumber: 2.4 Consensus size: 41
21736775 CTAACATTTA
* *
21736785 ATATATCAAGTTTTATACTTGAAAAGTATTTTTAATGTTCG
1 ATATGTCAAGTTTTATACTTGAAAAGTATTTTTAACGTTCG
* * * * *
21736826 ATATGTTAAGTTTTATAGTTGGAAAGTGTTTTTAACGTTTG
1 ATATGTCAAGTTTTATACTTGAAAAGTATTTTTAACGTTCG
* *
21736867 GTATGTCAAATTTTAT
1 ATATGTCAAGTTTTAT
21736883 TTACTTTTCC
Statistics
Matches: 47, Mismatches: 10, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
41 47 1.00
ACGTcount: A:0.31, C:0.05, G:0.16, T:0.48
Consensus pattern (41 bp):
ATATGTCAAGTTTTATACTTGAAAAGTATTTTTAACGTTCG
Found at i:21737986 original size:20 final size:20
Alignment explanation
Indices: 21737963--21738030 Score: 57
Period size: 21 Copynumber: 3.3 Consensus size: 20
21737953 AGTTTTTAAC
*
21737963 ACTTTTAATAGAATTT-TATA
1 ACTTTTAA-ACAATTTCTATA
21737983 ACTTTTTAAACAATTTCTATA
1 AC-TTTTAAACAATTTCTATA
* * * *
21738004 AATTTTATATATTTTTCTATA
1 ACTTTTAAACA-ATTTCTATA
21738025 ACTTTT
1 ACTTTT
21738031 CTTTATAGTT
Statistics
Matches: 39, Mismatches: 6, Indels: 5
0.78 0.12 0.10
Matches are distributed among these distances:
20 15 0.38
21 24 0.62
ACGTcount: A:0.35, C:0.09, G:0.01, T:0.54
Consensus pattern (20 bp):
ACTTTTAAACAATTTCTATA
Found at i:21738152 original size:10 final size:9
Alignment explanation
Indices: 21738133--21738197 Score: 67
Period size: 9 Copynumber: 7.0 Consensus size: 9
21738123 TGTTAATATC
21738133 TTATAATTT
1 TTATAATTT
21738142 TTATAATTT
1 TTATAATTT
21738151 TTATAATTT
1 TTATAATTT
*
21738160 TCTATTATTT
1 T-TATAATTT
* *
21738170 TCAAAATTT
1 TTATAATTT
*
21738179 TATATCATTT
1 T-TATAATTT
*
21738189 TAATAATTT
1 TTATAATTT
21738198 ATAGATTTAA
Statistics
Matches: 45, Mismatches: 9, Indels: 4
0.78 0.16 0.07
Matches are distributed among these distances:
9 31 0.69
10 14 0.31
ACGTcount: A:0.34, C:0.05, G:0.00, T:0.62
Consensus pattern (9 bp):
TTATAATTT
Found at i:21738156 original size:18 final size:19
Alignment explanation
Indices: 21738133--21738197 Score: 69
Period size: 19 Copynumber: 3.5 Consensus size: 19
21738123 TGTTAATATC
21738133 TTATAATTTT-TATAATTT
1 TTATAATTTTATATAATTT
* *
21738151 TTATAATTTTCTATTATTT
1 TTATAATTTTATATAATTT
* * *
21738170 TCAAAATTTTATATCATTT
1 TTATAATTTTATATAATTT
*
21738189 TAATAATTT
1 TTATAATTT
21738198 ATAGATTTAA
Statistics
Matches: 39, Mismatches: 7, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
18 10 0.26
19 29 0.74
ACGTcount: A:0.34, C:0.05, G:0.00, T:0.62
Consensus pattern (19 bp):
TTATAATTTTATATAATTT
Found at i:21740311 original size:2 final size:2
Alignment explanation
Indices: 21740304--21740341 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
21740294 CAAATATCAA
21740304 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
21740342 CACAATATAA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:21743915 original size:17 final size:17
Alignment explanation
Indices: 21743888--21743947 Score: 58
Period size: 17 Copynumber: 3.7 Consensus size: 17
21743878 AAATGAAGAA
21743888 AAAAAGTAAGAAAGAAAT
1 AAAAAG-AAGAAAGAAAT
21743906 AAAAAGAAG-AA-AAAT
1 AAAAAGAAGAAAGAAAT
*
21743921 -TAAAGAA-AAAGAAATT
1 AAAAAGAAGAAAGAAA-T
21743937 AAAAA-AAGAAA
1 AAAAAGAAGAAA
21743948 TGATATTATT
Statistics
Matches: 35, Mismatches: 2, Indels: 11
0.73 0.04 0.23
Matches are distributed among these distances:
14 8 0.23
15 7 0.20
16 5 0.14
17 9 0.26
18 6 0.17
ACGTcount: A:0.77, C:0.00, G:0.13, T:0.10
Consensus pattern (17 bp):
AAAAAGAAGAAAGAAAT
Found at i:21743917 original size:13 final size:13
Alignment explanation
Indices: 21743898--21743948 Score: 50
Period size: 13 Copynumber: 3.6 Consensus size: 13
21743888 AAAAAGTAAG
21743898 AAAGAAA-TAAAA
1 AAAGAAATTAAAA
21743910 AGAAGAAAAATTAAAGAA
1 A-AAG--AAATT-AA-AA
21743928 AAAGAAATTAAAA
1 AAAGAAATTAAAA
21743941 AAAGAAAT
1 AAAGAAAT
21743949 GATATTATTC
Statistics
Matches: 33, Mismatches: 0, Indels: 11
0.75 0.00 0.25
Matches are distributed among these distances:
12 1 0.03
13 13 0.39
14 2 0.06
15 8 0.24
16 1 0.03
17 5 0.15
18 3 0.09
ACGTcount: A:0.76, C:0.00, G:0.12, T:0.12
Consensus pattern (13 bp):
AAAGAAATTAAAA
Found at i:21745907 original size:10 final size:10
Alignment explanation
Indices: 21745892--21745917 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
21745882 CTTACTGATC
21745892 TGTTAGTATT
1 TGTTAGTATT
21745902 TGTTAGTATT
1 TGTTAGTATT
21745912 TGTTAG
1 TGTTAG
21745918 CAGTTAATGA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.19, C:0.00, G:0.23, T:0.58
Consensus pattern (10 bp):
TGTTAGTATT
Found at i:21747346 original size:50 final size:50
Alignment explanation
Indices: 21747233--21747477 Score: 230
Period size: 50 Copynumber: 4.8 Consensus size: 50
21747223 ATTGGGGTAA
* *
21747233 AGAGATCCCATGTAATACCATGTCTGGGACATGGCATTGGCATCATTGAGATTATG
1 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA-C--CGAG---ATG
* * *
21747289 AGGGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
1 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
* ** * *
21747339 AGAGGTCCCCCGTAAGACCATGTCTGGGACATGGCATGGGCACCGATATG
1 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
* * * *
21747389 AGA-ACTCCCATGTAAGACCATATTTGGGATATGGCATTGGCA--GTA-A-A
1 AGAGA-TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCG-AGATG
* * *
21747436 AAAAATCCCATGTAAGACCATGTCTGGGACATGGCTTTGGCA
1 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA
21747478 TGTTATTATC
Statistics
Matches: 162, Mismatches: 24, Indels: 15
0.81 0.12 0.07
Matches are distributed among these distances:
47 35 0.22
48 3 0.02
49 1 0.01
50 81 0.50
53 3 0.02
55 1 0.01
56 38 0.23
ACGTcount: A:0.28, C:0.21, G:0.28, T:0.23
Consensus pattern (50 bp):
AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
Found at i:21749341 original size:35 final size:36
Alignment explanation
Indices: 21749264--21749344 Score: 146
Period size: 36 Copynumber: 2.3 Consensus size: 36
21749254 ATTTATAACA
*
21749264 TATATATAATCAAATTTCTGTTAATGTATATTTTTT
1 TATAAATAATCAAATTTCTGTTAATGTATATTTTTT
21749300 TATAAATAATCAAATTTCTGTTAATGTATA-TTTTT
1 TATAAATAATCAAATTTCTGTTAATGTATATTTTTT
21749335 TATAAATAAT
1 TATAAATAAT
21749345 ATGTTAAATA
Statistics
Matches: 44, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
35 15 0.34
36 29 0.66
ACGTcount: A:0.38, C:0.05, G:0.05, T:0.52
Consensus pattern (36 bp):
TATAAATAATCAAATTTCTGTTAATGTATATTTTTT
Found at i:21764274 original size:17 final size:17
Alignment explanation
Indices: 21764244--21764276 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
21764234 TTTTATTATT
21764244 TTTTAAAATATTTTAAA
1 TTTTAAAATATTTTAAA
21764261 TTTTATAAAT-TTTTAA
1 TTTTA-AAATATTTTAA
21764277 TAATTTATTT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (17 bp):
TTTTAAAATATTTTAAA
Found at i:21766192 original size:21 final size:20
Alignment explanation
Indices: 21766168--21766227 Score: 59
Period size: 21 Copynumber: 2.9 Consensus size: 20
21766158 CATCATGTAA
*
21766168 AAAATAATAAAAATATATTTT
1 AAAATAATAAAAATA-ATTAT
21766189 AAAA-ATATAAAAATAATTAT
1 AAAATA-ATAAAAATAATTAT
* *
21766209 AAAATTGATAAAAAAAATT
1 AAAA-TAATAAAAATAATT
21766228 TATATAAACG
Statistics
Matches: 33, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
20 9 0.27
21 24 0.73
ACGTcount: A:0.67, C:0.00, G:0.02, T:0.32
Consensus pattern (20 bp):
AAAATAATAAAAATAATTAT
Found at i:21766572 original size:30 final size:31
Alignment explanation
Indices: 21766538--21766601 Score: 94
Period size: 31 Copynumber: 2.1 Consensus size: 31
21766528 CAGTTAGACT
* *
21766538 TGAATTTT-AAAATCTAAAAAGTAGAGGGAC
1 TGAATTTTAAAAATCCAAAAAGTACAGGGAC
*
21766568 TGAATTTTAAAAATCCAAAGAGTACAGGGAC
1 TGAATTTTAAAAATCCAAAAAGTACAGGGAC
21766599 TGA
1 TGA
21766602 TGGCAGATTT
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
30 8 0.27
31 22 0.73
ACGTcount: A:0.45, C:0.09, G:0.20, T:0.25
Consensus pattern (31 bp):
TGAATTTTAAAAATCCAAAAAGTACAGGGAC
Found at i:21769653 original size:29 final size:28
Alignment explanation
Indices: 21769620--21769698 Score: 104
Period size: 29 Copynumber: 2.7 Consensus size: 28
21769610 TTTAAATCTG
*
21769620 AAAAGTAAATGGATTAAATTCTTGAAAAT
1 AAAAGTAAA-GGACTAAATTCTTGAAAAT
*
21769649 AAAAGTACAAGAACTAAATTCTTGAAAAT
1 AAAAGTA-AAGGACTAAATTCTTGAAAAT
*
21769678 AAAAGTACAGGGACTAAATTC
1 AAAAGTA-AAGGACTAAATTC
21769699 CAAATTTGTG
Statistics
Matches: 45, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
29 43 0.96
30 2 0.04
ACGTcount: A:0.52, C:0.09, G:0.14, T:0.25
Consensus pattern (28 bp):
AAAAGTAAAGGACTAAATTCTTGAAAAT
Found at i:21769776 original size:15 final size:15
Alignment explanation
Indices: 21769756--21769807 Score: 50
Period size: 15 Copynumber: 3.2 Consensus size: 15
21769746 ACTATAAAAC
21769756 ATTTATTATTAATAT
1 ATTTATTATTAATAT
*
21769771 ATTTATAATTGTAATAAAT
1 ATTTATTA-T-TAAT--AT
*
21769790 ATTTATTATTAAAAT
1 ATTTATTATTAATAT
21769805 ATT
1 ATT
21769808 AATATTGAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 8
0.73 0.07 0.20
Matches are distributed among these distances:
15 12 0.40
16 1 0.03
17 7 0.23
18 1 0.03
19 9 0.30
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (15 bp):
ATTTATTATTAATAT
Found at i:21769932 original size:16 final size:14
Alignment explanation
Indices: 21769883--21769933 Score: 52
Period size: 13 Copynumber: 3.6 Consensus size: 14
21769873 GAAATATTAA
* *
21769883 ATAATATATTA-AA
1 ATAATAAATTATAT
21769896 ATAATAAATTATAT
1 ATAATAAATTATAT
21769910 -TAATAAATTATTAT
1 ATAATAAATTA-TAT
21769924 ATAATTAAAT
1 ATAA-TAAAT
21769934 ATGTATGTTT
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
13 20 0.62
14 4 0.12
15 3 0.09
16 5 0.16
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (14 bp):
ATAATAAATTATAT
Found at i:21770315 original size:6 final size:6
Alignment explanation
Indices: 21770304--21770360 Score: 51
Period size: 6 Copynumber: 8.8 Consensus size: 6
21770294 TTTTCCTCTA
* *
21770304 TTTTCC TTTTCC TTTTCCC TTTCACC TTCTTCTA TTTTCC TTTTCC TTTTCC
1 TTTTCC TTTTCC TTTT-CC TTT-TCC TT-TTC-C TTTTCC TTTTCC TTTTCC
*
21770356 CTTTC
1 TTTTC
21770361 ACGTTCTTCT
Statistics
Matches: 42, Mismatches: 5, Indels: 8
0.76 0.09 0.15
Matches are distributed among these distances:
6 26 0.62
7 13 0.31
8 3 0.07
ACGTcount: A:0.04, C:0.35, G:0.00, T:0.61
Consensus pattern (6 bp):
TTTTCC
Found at i:21770340 original size:34 final size:34
Alignment explanation
Indices: 21770300--21770370 Score: 133
Period size: 34 Copynumber: 2.1 Consensus size: 34
21770290 TTATTTTTCC
21770300 TCTATTTTCCTTTTCCTTTTCCCTTTCACCTTCT
1 TCTATTTTCCTTTTCCTTTTCCCTTTCACCTTCT
*
21770334 TCTATTTTCCTTTTCCTTTTCCCTTTCACGTTCT
1 TCTATTTTCCTTTTCCTTTTCCCTTTCACCTTCT
21770368 TCT
1 TCT
21770371 CTTATGTATT
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 36 1.00
ACGTcount: A:0.06, C:0.34, G:0.01, T:0.59
Consensus pattern (34 bp):
TCTATTTTCCTTTTCCTTTTCCCTTTCACCTTCT
Found at i:21772658 original size:28 final size:29
Alignment explanation
Indices: 21772625--21772689 Score: 71
Period size: 28 Copynumber: 2.3 Consensus size: 29
21772615 CTTAGAGTTT
*
21772625 GAATTTAAAG-TTTAGAGTTTAAAATTCA
1 GAATTTAAAGATTTAGAATTTAAAATTCA
* * * *
21772653 GAATTT-TAGATTTATAATTTGATATTCA
1 GAATTTAAAGATTTAGAATTTAAAATTCA
21772681 GAATTTAAA
1 GAATTTAAA
21772690 TTAAAAATTT
Statistics
Matches: 29, Mismatches: 6, Indels: 3
0.76 0.16 0.08
Matches are distributed among these distances:
27 2 0.07
28 26 0.90
29 1 0.03
ACGTcount: A:0.42, C:0.03, G:0.12, T:0.43
Consensus pattern (29 bp):
GAATTTAAAGATTTAGAATTTAAAATTCA
Found at i:21773052 original size:23 final size:25
Alignment explanation
Indices: 21773022--21773073 Score: 90
Period size: 25 Copynumber: 2.2 Consensus size: 25
21773012 ACTATGTCCA
21773022 ATTTAAAAG-AAAAA-AATTATACT
1 ATTTAAAAGAAAAAAGAATTATACT
21773045 ATTTAAAAGAAAAAAGAATTATACT
1 ATTTAAAAGAAAAAAGAATTATACT
21773070 ATTT
1 ATTT
21773074 TTTTCTAACA
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
23 9 0.33
24 5 0.19
25 13 0.48
ACGTcount: A:0.58, C:0.04, G:0.06, T:0.33
Consensus pattern (25 bp):
ATTTAAAAGAAAAAAGAATTATACT
Found at i:21773635 original size:15 final size:16
Alignment explanation
Indices: 21773615--21773648 Score: 52
Period size: 15 Copynumber: 2.2 Consensus size: 16
21773605 TTAAAATTTG
*
21773615 AAAAATACCAA-AACT
1 AAAAATAACAATAACT
21773630 AAAAATAACAATAACT
1 AAAAATAACAATAACT
21773646 AAA
1 AAA
21773649 TCTATAACTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 10 0.59
16 7 0.41
ACGTcount: A:0.71, C:0.15, G:0.00, T:0.15
Consensus pattern (16 bp):
AAAAATAACAATAACT
Found at i:21776002 original size:6 final size:6
Alignment explanation
Indices: 21775991--21776017 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
21775981 CTATAACTAA
21775991 AAATAT AAATAT AAATAT AAATAT AAA
1 AAATAT AAATAT AAATAT AAATAT AAA
21776018 ATCTAAAAGA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (6 bp):
AAATAT
Found at i:21776003 original size:18 final size:18
Alignment explanation
Indices: 21775982--21776017 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
21775972 TTTATATTTC
*
21775982 TATAACTAAAAATATAAA
1 TATAAATAAAAATATAAA
*
21776000 TATAAATATAAATATAAA
1 TATAAATAAAAATATAAA
21776018 ATCTAAAAGA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.67, C:0.03, G:0.00, T:0.31
Consensus pattern (18 bp):
TATAAATAAAAATATAAA
Found at i:21777614 original size:15 final size:15
Alignment explanation
Indices: 21777591--21777626 Score: 63
Period size: 15 Copynumber: 2.4 Consensus size: 15
21777581 GTTCCAAATG
*
21777591 TTGCAACAAGTTCTA
1 TTGCTACAAGTTCTA
21777606 TTGCTACAAGTTCTA
1 TTGCTACAAGTTCTA
21777621 TTGCTA
1 TTGCTA
21777627 AATTGTACTT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.28, C:0.19, G:0.14, T:0.39
Consensus pattern (15 bp):
TTGCTACAAGTTCTA
Found at i:21779217 original size:20 final size:20
Alignment explanation
Indices: 21779187--21779224 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
21779177 ATAAATATAT
21779187 ATTTTTTATTTT-TAAAATA
1 ATTTTTTATTTTCTAAAATA
21779206 ATTTTTTAATTTTCTAAAA
1 ATTTTTT-ATTTTCTAAAA
21779225 ATTTTTTGGT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
19 7 0.41
20 5 0.29
21 5 0.29
ACGTcount: A:0.37, C:0.03, G:0.00, T:0.61
Consensus pattern (20 bp):
ATTTTTTATTTTCTAAAATA
Found at i:21785505 original size:92 final size:92
Alignment explanation
Indices: 21785401--21785790 Score: 568
Period size: 92 Copynumber: 4.2 Consensus size: 92
21785391 ATCCAATGCT
*
21785401 CAAATCAATTCAGCAATATATATCCATATACAAATCAAATTCGGCAATGTATATCTATATACAAA
1 CAAATCAATTCAGCAATGTATATCCATATACAAATCAAATTCGGCAATGTATATCTATATACAAA
*
21785466 TC-AATTCGGCAATGTATATCCATATA
66 TCAAATTCGGCAATGTATATCTATATA
**
21785492 CAAATCAAATTCAGCAATGTATAAACATATACAAATCAAATTCGGCAATGTATATCTATATACAA
1 CAAATC-AATTCAGCAATGTATATCCATATACAAATCAAATTCGGCAATGTATATCTATATACAA
**
21785557 ATCAAATTCAACAATGTATATCTATATA
65 ATCAAATTCGGCAATGTATATCTATATA
* * * *
21785585 CAAATCAATTC-GACAATGTATATCCATATACAAATCAAATTCGACAATGTATAACCATATAAAA
1 CAAATCAATTCAG-CAATGTATATCCATATACAAATCAAATTCGGCAATGTATATCTATATACAA
*
21785649 ATCAAATTAGGCAATGTATATCTATATA
65 ATCAAATTCGGCAATGTATATCTATATA
* * * * * * *
21785677 AAAATCAATTCGGCAATGTATATCTATAAACAATTCAAATTCGGCAATGTATACCTATAAACAAA
1 CAAATCAATTCAGCAATGTATATCCATATACAAATCAAATTCGGCAATGTATATCTATATACAAA
*
21785742 TCAAATTCGGCAATGTATATCTTTATA
66 TCAAATTCGGCAATGTATATCTATATA
*
21785769 CAAATCAATTCGGCAATGTATA
1 CAAATCAATTCAGCAATGTATA
21785791 AAACATATAC
Statistics
Matches: 268, Mismatches: 27, Indels: 7
0.89 0.09 0.02
Matches are distributed among these distances:
91 7 0.03
92 233 0.87
93 28 0.10
ACGTcount: A:0.45, C:0.17, G:0.08, T:0.30
Consensus pattern (92 bp):
CAAATCAATTCAGCAATGTATATCCATATACAAATCAAATTCGGCAATGTATATCTATATACAAA
TCAAATTCGGCAATGTATATCTATATA
Found at i:21785799 original size:123 final size:122
Alignment explanation
Indices: 21785401--21785790 Score: 563
Period size: 123 Copynumber: 3.2 Consensus size: 122
21785391 ATCCAATGCT
* * *
21785401 CAAATC-AATTCAGCAATATATATCCATATACAAATCAAATTCGGCAATGTATATCTATATACAA
1 CAAATCAAATTCGGCAATGTATATCTATATACAAATCAAATTCGGCAATGTATATCTATATACAA
*
21785465 ATCAATTCGGCAATGTATATCCATATACAAATCAAATTCAGCAATGTATAAACATATA
66 ATCAATTCGGCAATGTATATCCATATACAAATCAAATTCGGCAATGTAT-AACATATA
**
21785523 CAAATCAAATTCGGCAATGTATATCTATATACAAATCAAATTCAACAATGTATATCTATATACAA
1 CAAATCAAATTCGGCAATGTATATCTATATACAAATCAAATTCGGCAATGTATATCTATATACAA
* *
21785588 ATCAATTCGACAATGTATATCCATATACAAATCAAATTCGACAATGTATAACCATATA
66 ATCAATTCGGCAATGTATATCCATATACAAATCAAATTCGGCAATGTATAA-CATATA
* * * *
21785646 AAAATCAAATTAGGCAATGTATATCTATATAAAAATC-AATTCGGCAATGTATATCTATAAACAA
1 CAAATCAAATTCGGCAATGTATATCTATATACAAATCAAATTCGGCAATGTATATCTATATACAA
* * * *
21785710 TTCAAATTCGGCAATGTATA-CCTATAAACAAATCAAATTCGGCAATGTATATCTTTATA
66 ATC-AATTCGGCAATGTATATCC-ATATACAAATCAAATTCGGCAATGTATAAC-ATATA
21785769 CAAATC-AATTCGGCAATGTATA
1 CAAATCAAATTCGGCAATGTATA
21785791 AAACATATAC
Statistics
Matches: 241, Mismatches: 22, Indels: 10
0.88 0.08 0.04
Matches are distributed among these distances:
122 52 0.22
123 189 0.78
ACGTcount: A:0.45, C:0.17, G:0.08, T:0.30
Consensus pattern (122 bp):
CAAATCAAATTCGGCAATGTATATCTATATACAAATCAAATTCGGCAATGTATATCTATATACAA
ATCAATTCGGCAATGTATATCCATATACAAATCAAATTCGGCAATGTATAACATATA
Found at i:21785801 original size:31 final size:31
Alignment explanation
Indices: 21785401--21785790 Score: 540
Period size: 31 Copynumber: 12.7 Consensus size: 31
21785391 ATCCAATGCT
* * *
21785401 CAAATC-AATTCAGCAATATATATCCATATA
1 CAAATCAAATTCGGCAATGTATATCTATATA
21785431 CAAATCAAATTCGGCAATGTATATCTATATA
1 CAAATCAAATTCGGCAATGTATATCTATATA
*
21785462 CAAATC-AATTCGGCAATGTATATCCATATA
1 CAAATCAAATTCGGCAATGTATATCTATATA
* *
21785492 CAAATCAAATTCAGCAATGTATAAAC-ATATA
1 CAAATCAAATTCGGCAATGTAT-ATCTATATA
21785523 CAAATCAAATTCGGCAATGTATATCTATATA
1 CAAATCAAATTCGGCAATGTATATCTATATA
**
21785554 CAAATCAAATTCAACAATGTATATCTATATA
1 CAAATCAAATTCGGCAATGTATATCTATATA
* *
21785585 CAAATC-AATTCGACAATGTATATCCATATA
1 CAAATCAAATTCGGCAATGTATATCTATATA
* * *
21785615 CAAATCAAATTCGACAATGTATAACCATATA
1 CAAATCAAATTCGGCAATGTATATCTATATA
* *
21785646 AAAATCAAATTAGGCAATGTATATCTATATA
1 CAAATCAAATTCGGCAATGTATATCTATATA
* *
21785677 AAAATC-AATTCGGCAATGTATATCTATAAA
1 CAAATCAAATTCGGCAATGTATATCTATATA
* * *
21785707 CAATTCAAATTCGGCAATGTATACCTATAAA
1 CAAATCAAATTCGGCAATGTATATCTATATA
*
21785738 CAAATCAAATTCGGCAATGTATATCTTTATA
1 CAAATCAAATTCGGCAATGTATATCTATATA
21785769 CAAATC-AATTCGGCAATGTATA
1 CAAATCAAATTCGGCAATGTATA
21785791 AAACATATAC
Statistics
Matches: 327, Mismatches: 27, Indels: 12
0.89 0.07 0.03
Matches are distributed among these distances:
30 107 0.33
31 218 0.67
32 2 0.01
ACGTcount: A:0.45, C:0.17, G:0.08, T:0.30
Consensus pattern (31 bp):
CAAATCAAATTCGGCAATGTATATCTATATA
Found at i:21791426 original size:29 final size:29
Alignment explanation
Indices: 21791384--21791448 Score: 121
Period size: 29 Copynumber: 2.2 Consensus size: 29
21791374 AGATAAGCTT
21791384 ATTGGATCTCTATAGACTATCAAGGTCAA
1 ATTGGATCTCTATAGACTATCAAGGTCAA
*
21791413 ATTGGATCTCTATAGACTTTCAAGGTCAA
1 ATTGGATCTCTATAGACTATCAAGGTCAA
21791442 ATTGGAT
1 ATTGGAT
21791449 AAGTAAAGAA
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 35 1.00
ACGTcount: A:0.32, C:0.15, G:0.18, T:0.34
Consensus pattern (29 bp):
ATTGGATCTCTATAGACTATCAAGGTCAA
Found at i:21811608 original size:25 final size:25
Alignment explanation
Indices: 21811580--21811630 Score: 102
Period size: 25 Copynumber: 2.0 Consensus size: 25
21811570 AGAATTCTTC
21811580 CAAGGCACCAATTGAAGAGCGGAAG
1 CAAGGCACCAATTGAAGAGCGGAAG
21811605 CAAGGCACCAATTGAAGAGCGGAAG
1 CAAGGCACCAATTGAAGAGCGGAAG
21811630 C
1 C
21811631 GATTTATGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.39, C:0.22, G:0.31, T:0.08
Consensus pattern (25 bp):
CAAGGCACCAATTGAAGAGCGGAAG
Found at i:21829094 original size:22 final size:22
Alignment explanation
Indices: 21829069--21829117 Score: 53
Period size: 22 Copynumber: 2.2 Consensus size: 22
21829059 TTGTTTTACT
*
21829069 TTTTGCTACTATTTTACTATCA
1 TTTTGCTACTATGTTACTATCA
* * * *
21829091 TTTTACTATTATGTTGCTATTA
1 TTTTGCTACTATGTTACTATCA
21829113 TTTTG
1 TTTTG
21829118 TTGTTAATGT
Statistics
Matches: 21, Mismatches: 6, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.20, C:0.12, G:0.08, T:0.59
Consensus pattern (22 bp):
TTTTGCTACTATGTTACTATCA
Found at i:21831289 original size:21 final size:21
Alignment explanation
Indices: 21831259--21831299 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
21831249 TGGGATAAAT
*
21831259 GTTGATCATCATGTAGCTCAA
1 GTTGAACATCATGTAGCTCAA
*
21831280 GTTGAACATCCTGTAGCTCA
1 GTTGAACATCATGTAGCTCA
21831300 TATTCACACA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.27, C:0.22, G:0.20, T:0.32
Consensus pattern (21 bp):
GTTGAACATCATGTAGCTCAA
Found at i:21834225 original size:25 final size:25
Alignment explanation
Indices: 21834197--21834251 Score: 58
Period size: 25 Copynumber: 2.2 Consensus size: 25
21834187 CTTTCCTGTC
*
21834197 TTTATTTTATAACAAT-TTTAATTTT
1 TTTATTGTATAA-AATATTTAATTTT
* * *
21834222 TTTAGTGTATTATATATTTAATTTT
1 TTTATTGTATAAAATATTTAATTTT
21834247 TTTAT
1 TTTAT
21834252 ATAAAAAATG
Statistics
Matches: 24, Mismatches: 5, Indels: 2
0.77 0.16 0.06
Matches are distributed among these distances:
24 2 0.08
25 22 0.92
ACGTcount: A:0.29, C:0.02, G:0.04, T:0.65
Consensus pattern (25 bp):
TTTATTGTATAAAATATTTAATTTT
Found at i:21842966 original size:19 final size:21
Alignment explanation
Indices: 21842930--21842981 Score: 65
Period size: 20 Copynumber: 2.6 Consensus size: 21
21842920 AAATATAAAA
21842930 TTTGAAATTTTTATAAA-TAT
1 TTTGAAATTTTTATAAATTAT
21842950 TTTG-AATTTTTGA-AAATTAT
1 TTTGAAATTTTT-ATAAATTAT
*
21842970 TTTAAAATTTTT
1 TTTGAAATTTTT
21842982 TGTAATTTTT
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
19 10 0.36
20 11 0.39
21 7 0.25
ACGTcount: A:0.37, C:0.00, G:0.06, T:0.58
Consensus pattern (21 bp):
TTTGAAATTTTTATAAATTAT
Found at i:21855243 original size:30 final size:30
Alignment explanation
Indices: 21855207--21855281 Score: 150
Period size: 30 Copynumber: 2.5 Consensus size: 30
21855197 AAAAATAAAA
21855207 ATTTACCAAAATATTACAAATTTTTCTTTT
1 ATTTACCAAAATATTACAAATTTTTCTTTT
21855237 ATTTACCAAAATATTACAAATTTTTCTTTT
1 ATTTACCAAAATATTACAAATTTTTCTTTT
21855267 ATTTACCAAAATATT
1 ATTTACCAAAATATT
21855282 GCTTTTTTAA
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 45 1.00
ACGTcount: A:0.39, C:0.13, G:0.00, T:0.48
Consensus pattern (30 bp):
ATTTACCAAAATATTACAAATTTTTCTTTT
Found at i:21855336 original size:22 final size:22
Alignment explanation
Indices: 21855310--21855351 Score: 75
Period size: 22 Copynumber: 1.9 Consensus size: 22
21855300 CAAAATATAT
*
21855310 CAAAAAAAAAAACAACAAAAGA
1 CAAAAAAAAAAAAAACAAAAGA
21855332 CAAAAAAAAAAAAAACAAAA
1 CAAAAAAAAAAAAAACAAAA
21855352 ACTGACACAG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.86, C:0.12, G:0.02, T:0.00
Consensus pattern (22 bp):
CAAAAAAAAAAAAAACAAAAGA
Found at i:21855410 original size:27 final size:27
Alignment explanation
Indices: 21855372--21855455 Score: 161
Period size: 27 Copynumber: 3.1 Consensus size: 27
21855362 CCTGATCACC
21855372 CCAATGCCATTGGCGGCACCAATGGTG
1 CCAATGCCATTGGCGGCACCAATGGTG
21855399 CCAATGCCATTGGCGGCACCAATGGTG
1 CCAATGCCATTGGCGGCACCAATGGTG
21855426 CCAATGCCATTGGCGGCACCAAT-GTG
1 CCAATGCCATTGGCGGCACCAATGGTG
21855452 CCAA
1 CCAA
21855456 AGGACTAAAA
Statistics
Matches: 57, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
26 7 0.12
27 50 0.88
ACGTcount: A:0.24, C:0.31, G:0.27, T:0.18
Consensus pattern (27 bp):
CCAATGCCATTGGCGGCACCAATGGTG
Found at i:21855663 original size:18 final size:18
Alignment explanation
Indices: 21855630--21855786 Score: 161
Period size: 18 Copynumber: 8.5 Consensus size: 18
21855620 TCACTTTTTT
* *
21855630 ATTTAATAACTCTATTTTA
1 ATTTAATAA-ACTATTCTA
* *
21855649 ATTTAATAAAATATTCTC
1 ATTTAATAAACTATTCTA
* *
21855667 ATTTAATAACTCTATTTTA
1 ATTTAATAA-ACTATTCTA
*
21855686 ATTTAATAAACTATTCTC
1 ATTTAATAAACTATTCTA
* *
21855704 ATTTAATAACTCTATTTTA
1 ATTTAATAA-ACTATTCTA
*
21855723 ATTTAATAAACTATTCTC
1 ATTTAATAAACTATTCTA
* *
21855741 ATTTAATAACTCTATTTTA
1 ATTTAATAA-ACTATTCTA
*
21855760 ATTTAATAAACTATTCTC
1 ATTTAATAAACTATTCTA
21855778 ATTTAATAA
1 ATTTAATAA
21855787 CTGCAGCACC
Statistics
Matches: 112, Mismatches: 23, Indels: 7
0.79 0.16 0.05
Matches are distributed among these distances:
18 59 0.53
19 53 0.47
ACGTcount: A:0.39, C:0.12, G:0.00, T:0.48
Consensus pattern (18 bp):
ATTTAATAAACTATTCTA
Found at i:21855673 original size:37 final size:37
Alignment explanation
Indices: 21855630--21855788 Score: 309
Period size: 37 Copynumber: 4.3 Consensus size: 37
21855620 TCACTTTTTT
*
21855630 ATTTAATAACTCTATTTTAATTTAATAAAATATTCTC
1 ATTTAATAACTCTATTTTAATTTAATAAACTATTCTC
21855667 ATTTAATAACTCTATTTTAATTTAATAAACTATTCTC
1 ATTTAATAACTCTATTTTAATTTAATAAACTATTCTC
21855704 ATTTAATAACTCTATTTTAATTTAATAAACTATTCTC
1 ATTTAATAACTCTATTTTAATTTAATAAACTATTCTC
21855741 ATTTAATAACTCTATTTTAATTTAATAAACTATTCTC
1 ATTTAATAACTCTATTTTAATTTAATAAACTATTCTC
21855778 ATTTAATAACT
1 ATTTAATAACT
21855789 GCAGCACCTT
Statistics
Matches: 121, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
37 121 1.00
ACGTcount: A:0.39, C:0.13, G:0.00, T:0.48
Consensus pattern (37 bp):
ATTTAATAACTCTATTTTAATTTAATAAACTATTCTC
Found at i:21859434 original size:45 final size:46
Alignment explanation
Indices: 21859380--21859490 Score: 197
Period size: 46 Copynumber: 2.4 Consensus size: 46
21859370 ATCACTTGTC
*
21859380 CTTGATCAGATAAGTGTAGCT-AGGCTACCACTTATCACTTTACCA
1 CTTGATCAGATAAGTGTAGCTGAAGCTACCACTTATCACTTTACCA
*
21859425 CTTGATCAGATAAGTGTAGCTGAAGCTACCACTTATCACTTTATCA
1 CTTGATCAGATAAGTGTAGCTGAAGCTACCACTTATCACTTTACCA
21859471 CTTGATCAGATAAGTGTAGC
1 CTTGATCAGATAAGTGTAGC
21859491 CACTTATCAC
Statistics
Matches: 63, Mismatches: 2, Indels: 1
0.95 0.03 0.02
Matches are distributed among these distances:
45 21 0.33
46 42 0.67
ACGTcount: A:0.30, C:0.22, G:0.17, T:0.32
Consensus pattern (46 bp):
CTTGATCAGATAAGTGTAGCTGAAGCTACCACTTATCACTTTACCA
Found at i:21859473 original size:46 final size:45
Alignment explanation
Indices: 21859367--21859637 Score: 216
Period size: 37 Copynumber: 6.6 Consensus size: 45
21859357 CATATGACCT
* *
21859367 CTTATCAC-TTGTC-CTTGATCAGATAAGTGTAGCTAGGCTACCA
1 CTTATCACTTTATCACTTGATCAGATAAGTGTAGCTAAGCTACCA
*
21859410 CTTATCACTTTACCACTTGATCAGATAAGTGTAGCTGAAGCTACCA
1 CTTATCACTTTATCACTTGATCAGATAAGTGTAGCT-AAGCTACCA
21859456 CTTATCACTTTATCACTTGATCAGATAA--GT-G-T-AG---CCA
1 CTTATCACTTTATCACTTGATCAGATAAGTGTAGCTAAGCTACCA
* **
21859493 CTTATCACTTTGTTTCTTGATCAGATAA--GT-G-T-A---ACCA
1 CTTATCACTTTATCACTTGATCAGATAAGTGTAGCTAAGCTACCA
* **
21859530 CTTATCACTTTGTTTCTTGATCAGATAA--GT-G-T-A---ACCA
1 CTTATCACTTTATCACTTGATCAGATAAGTGTAGCTAAGCTACCA
* ** *
21859567 CTTATCACTTTGTTTCTTGATCAGATAAGTGTAGCTAAAACTACCA
1 CTTATCACTTTATCACTTGATCAGATAAGTGTAGCT-AAGCTACCA
*
21859613 CTTATCACTTTGTCACTTGATCAGA
1 CTTATCACTTTATCACTTGATCAGA
21859638 AGTACTCAAA
Statistics
Matches: 206, Mismatches: 9, Indels: 23
0.87 0.04 0.10
Matches are distributed among these distances:
37 101 0.49
39 2 0.01
40 3 0.01
41 1 0.00
42 1 0.00
43 10 0.05
44 5 0.02
45 21 0.10
46 62 0.30
ACGTcount: A:0.28, C:0.21, G:0.14, T:0.36
Consensus pattern (45 bp):
CTTATCACTTTATCACTTGATCAGATAAGTGTAGCTAAGCTACCA
Found at i:21859494 original size:37 final size:37
Alignment explanation
Indices: 21859452--21859599 Score: 260
Period size: 37 Copynumber: 4.0 Consensus size: 37
21859442 AGCTGAAGCT
* **
21859452 ACCACTTATCACTTTATCACTTGATCAGATAAGTGTA
1 ACCACTTATCACTTTGTTTCTTGATCAGATAAGTGTA
*
21859489 GCCACTTATCACTTTGTTTCTTGATCAGATAAGTGTA
1 ACCACTTATCACTTTGTTTCTTGATCAGATAAGTGTA
21859526 ACCACTTATCACTTTGTTTCTTGATCAGATAAGTGTA
1 ACCACTTATCACTTTGTTTCTTGATCAGATAAGTGTA
21859563 ACCACTTATCACTTTGTTTCTTGATCAGATAAGTGTA
1 ACCACTTATCACTTTGTTTCTTGATCAGATAAGTGTA
21859600 GCTAAAACTA
Statistics
Matches: 106, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 106 1.00
ACGTcount: A:0.28, C:0.20, G:0.14, T:0.39
Consensus pattern (37 bp):
ACCACTTATCACTTTGTTTCTTGATCAGATAAGTGTA
Found at i:21866711 original size:13 final size:13
Alignment explanation
Indices: 21866693--21866731 Score: 53
Period size: 13 Copynumber: 3.0 Consensus size: 13
21866683 GGCTGTGTCA
21866693 GTTTTTGTTTTTT
1 GTTTTTGTTTTTT
*
21866706 GTTTTTGTCTTTT
1 GTTTTTGTTTTTT
21866719 GTTGTTT-TTTTTT
1 GTT-TTTGTTTTTT
21866732 TTATATATTT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
13 20 0.87
14 3 0.13
ACGTcount: A:0.00, C:0.03, G:0.15, T:0.82
Consensus pattern (13 bp):
GTTTTTGTTTTTT
Found at i:21866792 original size:29 final size:29
Alignment explanation
Indices: 21866736--21866834 Score: 159
Period size: 29 Copynumber: 3.5 Consensus size: 29
21866726 TTTTTTTTAT
21866736 ATATTTTGGTAAATAATAAAAAAA---GTA
1 ATATTTTGGTAAATAA-AAAAAAAGTTGTA
*
21866763 ATATTTTGGAAAATAAAAAAAAAGTTGTA
1 ATATTTTGGTAAATAAAAAAAAAGTTGTA
21866792 ATATTTTGGTAAATAAAAAAAAAGTTGTA
1 ATATTTTGGTAAATAAAAAAAAAGTTGTA
21866821 ATATTTTGGTAAAT
1 ATATTTTGGTAAAT
21866835 TTTTATTTTT
Statistics
Matches: 67, Mismatches: 2, Indels: 4
0.92 0.03 0.05
Matches are distributed among these distances:
26 7 0.10
27 15 0.22
29 45 0.67
ACGTcount: A:0.52, C:0.00, G:0.13, T:0.35
Consensus pattern (29 bp):
ATATTTTGGTAAATAAAAAAAAAGTTGTA
Found at i:21868665 original size:26 final size:25
Alignment explanation
Indices: 21868623--21868679 Score: 87
Period size: 26 Copynumber: 2.2 Consensus size: 25
21868613 AGCTCCGGAA
21868623 AGCCATTAACGGGAAGCTCACAAAG
1 AGCCATTAACGGGAAGCTCACAAAG
* *
21868648 AGCCTTTAATCGGGAAGCTCACGAAG
1 AGCCATTAA-CGGGAAGCTCACAAAG
21868674 AGCCAT
1 AGCCAT
21868680 ATATCGGGGC
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
25 8 0.29
26 20 0.71
ACGTcount: A:0.35, C:0.25, G:0.25, T:0.16
Consensus pattern (25 bp):
AGCCATTAACGGGAAGCTCACAAAG
Found at i:21868694 original size:26 final size:26
Alignment explanation
Indices: 21868555--21868687 Score: 93
Period size: 24 Copynumber: 5.3 Consensus size: 26
21868545 ATTCGAGTTG
* *
21868555 TATAACGGGAAGCTCA-TAAGAGCCA
1 TATATCGGGAAGCTCACGAAGAGCCA
* * * * *
21868580 -AAATCGGGAAGTTTAAG-CGAGCCA
1 TATATCGGGAAGCTCACGAAGAGCCA
*
21868604 -ATATCGGGGAGCTC-CGGAA-AGCCA
1 TATATCGGGAAGCTCAC-GAAGAGCCA
* *
21868628 T-TAACGGGAAGCTCACAAAGAGCC-
1 TATATCGGGAAGCTCACGAAGAGCCA
*
21868652 TTTAATCGGGAAGCTCACGAAGAGCCA
1 TAT-ATCGGGAAGCTCACGAAGAGCCA
21868679 TATATCGGG
1 TATATCGGG
21868688 GCGCTCATAA
Statistics
Matches: 81, Mismatches: 18, Indels: 17
0.70 0.16 0.15
Matches are distributed among these distances:
24 47 0.58
25 6 0.07
26 26 0.32
27 2 0.02
ACGTcount: A:0.35, C:0.21, G:0.28, T:0.17
Consensus pattern (26 bp):
TATATCGGGAAGCTCACGAAGAGCCA
Found at i:21872231 original size:46 final size:46
Alignment explanation
Indices: 21872178--21872317 Score: 237
Period size: 46 Copynumber: 3.0 Consensus size: 46
21872168 CCATGGCAAA
*
21872178 TTGTGAAAAGTAGGTATGGTGTTTCAGTGAAGAAAATCATACTGAG
1 TTGTGAAAAGTAGGTATGGTGTTTCAGTGAAGAAAACCATACTGAG
*
21872224 TTGTGAAAAGTAGGTATGGTGTTTCAATGAAGAAAACCATACTGAG
1 TTGTGAAAAGTAGGTATGGTGTTTCAGTGAAGAAAACCATACTGAG
*
21872270 TTGTGAAAAGTAGGTATGGTATTTCAGTGAA-AGAAACCATACTGAG
1 TTGTGAAAAGTAGGTATGGTGTTTCAGTGAAGA-AAACCATACTGAG
21872316 TT
1 TT
21872318 ATAGCATTGT
Statistics
Matches: 89, Mismatches: 4, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
45 1 0.01
46 88 0.99
ACGTcount: A:0.36, C:0.08, G:0.26, T:0.30
Consensus pattern (46 bp):
TTGTGAAAAGTAGGTATGGTGTTTCAGTGAAGAAAACCATACTGAG
Found at i:21875416 original size:17 final size:17
Alignment explanation
Indices: 21875396--21875430 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
21875386 GAATTATTTG
21875396 TTAAAAATTA-ATAATAT
1 TTAAAAA-TACATAATAT
21875413 TTAAAAATACATAATAT
1 TTAAAAATACATAATAT
21875430 T
1 T
21875431 ACTTAAATAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 2 0.12
17 15 0.88
ACGTcount: A:0.57, C:0.03, G:0.00, T:0.40
Consensus pattern (17 bp):
TTAAAAATACATAATAT
Found at i:21898681 original size:21 final size:22
Alignment explanation
Indices: 21898649--21898691 Score: 54
Period size: 21 Copynumber: 2.0 Consensus size: 22
21898639 TCGGAAACCC
*
21898649 AACTCAGTTTCAACGA-GTTCA
1 AACTCAGTTTCAAAGATGTTCA
21898670 AACTCAAG-TTCAAAGATGTTCA
1 AACTC-AGTTTCAAAGATGTTCA
21898692 TCAAATGTCG
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
21 12 0.63
22 7 0.37
ACGTcount: A:0.37, C:0.21, G:0.14, T:0.28
Consensus pattern (22 bp):
AACTCAGTTTCAAAGATGTTCA
Found at i:21927268 original size:17 final size:17
Alignment explanation
Indices: 21927246--21927281 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
21927236 TTTGTTAACT
*
21927246 TTTTAAAGAGAAATATA
1 TTTTAAAGAAAAATATA
*
21927263 TTTTAAGGAAAAATATA
1 TTTTAAAGAAAAATATA
21927280 TT
1 TT
21927282 GGTATTTGAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.50, C:0.00, G:0.11, T:0.39
Consensus pattern (17 bp):
TTTTAAAGAAAAATATA
Found at i:21927907 original size:38 final size:37
Alignment explanation
Indices: 21927834--21927908 Score: 89
Period size: 38 Copynumber: 2.0 Consensus size: 37
21927824 TGCAATTGTA
**
21927834 ATATATGAAATTTAATTTGATTTAATTTTGATAAATTG
1 ATATATGAAATCAAATTTGATTTAATTTT-ATAAATTG
*
21927872 ATATATGAAATCAAAGTTTGGTTTAATGTTT-TAAATT
1 ATATATGAAATCAAA-TTTGATTTAAT-TTTATAAATT
21927909 TTGATAAATT
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
38 19 0.59
39 10 0.31
40 3 0.09
ACGTcount: A:0.39, C:0.01, G:0.12, T:0.48
Consensus pattern (37 bp):
ATATATGAAATCAAATTTGATTTAATTTTATAAATTG
Found at i:21933071 original size:114 final size:114
Alignment explanation
Indices: 21932871--21933100 Score: 451
Period size: 114 Copynumber: 2.0 Consensus size: 114
21932861 CCTTGTTTGA
21932871 GTGATTGGTGAATATATATAAGTTATTAAGTCTACCAAAATGTTCATTATATATGGAATAGCTTG
1 GTGATTGGTGAATATATATAAGTTATTAAGTCTACCAAAATGTTCATTATATATGGAATAGCTTG
*
21932936 TATGGTTTTGTGGTTGGTTAAAAGGATGAATCAACATGTGTTTAGATTG
66 TATAGTTTTGTGGTTGGTTAAAAGGATGAATCAACATGTGTTTAGATTG
21932985 GTGATTGGTGAATATATATAAGTTATTAAGTCTACCAAAATGTTCATTATATATGGAATAGCTTG
1 GTGATTGGTGAATATATATAAGTTATTAAGTCTACCAAAATGTTCATTATATATGGAATAGCTTG
21933050 TATAGTTTTGTGGTTGGTTAAAAGGATGAATCAACATGTGTTTAGATTG
66 TATAGTTTTGTGGTTGGTTAAAAGGATGAATCAACATGTGTTTAGATTG
21933099 GT
1 GT
21933101 TTTATGCAGG
Statistics
Matches: 115, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
114 115 1.00
ACGTcount: A:0.32, C:0.06, G:0.23, T:0.40
Consensus pattern (114 bp):
GTGATTGGTGAATATATATAAGTTATTAAGTCTACCAAAATGTTCATTATATATGGAATAGCTTG
TATAGTTTTGTGGTTGGTTAAAAGGATGAATCAACATGTGTTTAGATTG
Found at i:21962109 original size:2 final size:2
Alignment explanation
Indices: 21962102--21962133 Score: 55
Period size: 2 Copynumber: 16.0 Consensus size: 2
21962092 ATCGAATGAA
*
21962102 AT AT AT AT AT AT AT AT AT AT AT AT AT AC AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
21962134 TGATATTGAA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:21963197 original size:17 final size:18
Alignment explanation
Indices: 21963166--21963199 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
21963156 ATAAATAGAA
21963166 ATGATAATGAATGAGTTG
1 ATGATAATGAATGAGTTG
*
21963184 ATGA-AATGATTGAGTT
1 ATGATAATGAATGAGTT
21963200 TGTATGGATT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.38, C:0.00, G:0.26, T:0.35
Consensus pattern (18 bp):
ATGATAATGAATGAGTTG
Found at i:21973366 original size:3 final size:3
Alignment explanation
Indices: 21973358--21973384 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
21973348 TCTATAACAA
21973358 AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT
21973385 TATATACTAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:21973716 original size:2 final size:2
Alignment explanation
Indices: 21973709--21973743 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
21973699 CAATGGAATA
21973709 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
21973744 ATACTTTCTT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:21974256 original size:20 final size:20
Alignment explanation
Indices: 21974231--21974272 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
21974221 TAGAGTTTTA
* *
21974231 AGTTCAGAGTTCAGGGTTTG
1 AGTTCAAAGTTCACGGTTTG
*
21974251 AGTTCAAAGTTTACGGTTTG
1 AGTTCAAAGTTCACGGTTTG
21974271 AG
1 AG
21974273 GTACATGATT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.24, C:0.10, G:0.31, T:0.36
Consensus pattern (20 bp):
AGTTCAAAGTTCACGGTTTG
Found at i:21974719 original size:16 final size:15
Alignment explanation
Indices: 21974691--21974721 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
21974681 TATAATCCTT
21974691 TAAAAATTATAAAAA
1 TAAAAATTATAAAAA
*
21974706 TAAAAATTATTAAAA
1 TAAAAATTATAAAAA
21974721 T
1 T
21974722 CATATTTTTG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (15 bp):
TAAAAATTATAAAAA
Found at i:21977433 original size:22 final size:21
Alignment explanation
Indices: 21977408--21977452 Score: 72
Period size: 22 Copynumber: 2.1 Consensus size: 21
21977398 AAAAATTCAA
*
21977408 AAAAATGAATATATAAAAAATG
1 AAAAATGAAAATA-AAAAAATG
21977430 AAAAATGAAAATAAAAAAATG
1 AAAAATGAAAATAAAAAAATG
21977451 AA
1 AA
21977453 GTTAAAATTT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
21 10 0.45
22 12 0.55
ACGTcount: A:0.73, C:0.00, G:0.09, T:0.18
Consensus pattern (21 bp):
AAAAATGAAAATAAAAAAATG
Found at i:21977433 original size:24 final size:24
Alignment explanation
Indices: 21977395--21977452 Score: 68
Period size: 22 Copynumber: 2.5 Consensus size: 24
21977385 TATTATAAAC
* * *
21977395 TATAAAAATTCAAAAAAATGAATA
1 TATAAAAAATGAAAAAAATGAAAA
21977419 TATAAAAAATG--AAAAATGAAAA
1 TATAAAAAATGAAAAAAATGAAAA
21977441 TA-AAAAAATGAA
1 TATAAAAAATGAA
21977453 GTTAAAATTT
Statistics
Matches: 29, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
21 8 0.28
22 12 0.41
24 9 0.31
ACGTcount: A:0.71, C:0.02, G:0.07, T:0.21
Consensus pattern (24 bp):
TATAAAAAATGAAAAAAATGAAAA
Found at i:21977813 original size:23 final size:23
Alignment explanation
Indices: 21977787--21977844 Score: 59
Period size: 23 Copynumber: 2.5 Consensus size: 23
21977777 CTAAATTTGT
21977787 TATTTTTATTTTCAA-TTTATATA
1 TATTTTTATTTTCAAGTTTATA-A
*
21977810 TATTCTTT-TTTTGAAGTTTATAA
1 TATT-TTTATTTTCAAGTTTATAA
21977833 T-TTTTATATTTT
1 TATTTT-TATTTT
21977845 TTAACAAATG
Statistics
Matches: 30, Mismatches: 1, Indels: 8
0.77 0.03 0.21
Matches are distributed among these distances:
21 2 0.07
22 3 0.10
23 16 0.53
24 9 0.30
ACGTcount: A:0.26, C:0.03, G:0.03, T:0.67
Consensus pattern (23 bp):
TATTTTTATTTTCAAGTTTATAA
Found at i:21982747 original size:2 final size:2
Alignment explanation
Indices: 21982740--21982772 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
21982730 NNNTATACTA
21982740 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
21982773 AAGGTTATTA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:21986249 original size:18 final size:19
Alignment explanation
Indices: 21986222--21986271 Score: 50
Period size: 18 Copynumber: 2.6 Consensus size: 19
21986212 GATAGCATAA
*
21986222 AAGAATGAAGGTAAAA-AG
1 AAGAAGGAAGGTAAAAGAG
*
21986240 AAGAAGGAAGAATAAAAGAG
1 AAGAAGGAAG-GTAAAAGAG
21986260 ACAG-AGGAAGGT
1 A-AGAAGGAAGGT
21986272 TGAAAAAGCT
Statistics
Matches: 26, Mismatches: 3, Indels: 5
0.76 0.09 0.15
Matches are distributed among these distances:
18 9 0.35
19 6 0.23
20 9 0.35
21 2 0.08
ACGTcount: A:0.58, C:0.02, G:0.32, T:0.08
Consensus pattern (19 bp):
AAGAAGGAAGGTAAAAGAG
Found at i:21991988 original size:14 final size:14
Alignment explanation
Indices: 21991969--21991996 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
21991959 ACTAAATTCT
21991969 TGAAAATTAAATTA
1 TGAAAATTAAATTA
21991983 TGAAAATTAAATTA
1 TGAAAATTAAATTA
21991997 CAAATATACA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.57, C:0.00, G:0.07, T:0.36
Consensus pattern (14 bp):
TGAAAATTAAATTA
Found at i:21998305 original size:40 final size:38
Alignment explanation
Indices: 21998253--21998352 Score: 136
Period size: 40 Copynumber: 2.7 Consensus size: 38
21998243 NNNNNATTTT
*
21998253 AAAAATTAAAAAAAGTATTTTAAAAATATTTTAAAATTAA
1 AAAAATTTAAAAAAGTATTTTAAAAATATTTT-AAATT-A
21998293 AAAAATTTAAAAAAAGTATTTT-AAAATATTTTAAATTA
1 AAAAATTT-AAAAAAGTATTTTAAAAATATTTTAAATTA
21998331 AAAAA-TT-AAAAA-TATTTTAAAA
1 AAAAATTTAAAAAAGTATTTTAAAA
21998353 TTAAAAATTT
Statistics
Matches: 57, Mismatches: 1, Indels: 9
0.85 0.01 0.13
Matches are distributed among these distances:
34 6 0.11
35 8 0.14
37 2 0.04
38 6 0.11
39 5 0.09
40 17 0.30
41 13 0.23
ACGTcount: A:0.62, C:0.00, G:0.02, T:0.36
Consensus pattern (38 bp):
AAAAATTTAAAAAAGTATTTTAAAAATATTTTAAATTA
Found at i:21998311 original size:41 final size:37
Alignment explanation
Indices: 21998253--21998353 Score: 145
Period size: 41 Copynumber: 2.7 Consensus size: 37
21998243 NNNNNATTTT
21998253 AAAAATTAAAAAAAGTATTTTAAAAATATTTTAAAATTAA
1 AAAAATTAAAAAAAGTATTTT-AAAATATTTT-AAATT-A
21998293 AAAAATTTAAAAAAAGTATTTTAAAATATTTTAAATTA
1 AAAAA-TTAAAAAAAGTATTTTAAAATATTTTAAATTA
21998331 AAAAATT--AAAAA-TATTTTAAAAT
1 AAAAATTAAAAAAAGTATTTTAAAAT
21998354 TAAAAATTTA
Statistics
Matches: 60, Mismatches: 0, Indels: 8
0.88 0.00 0.12
Matches are distributed among these distances:
34 11 0.18
35 5 0.08
37 2 0.03
38 6 0.10
39 5 0.08
40 15 0.25
41 16 0.27
ACGTcount: A:0.61, C:0.00, G:0.02, T:0.37
Consensus pattern (37 bp):
AAAAATTAAAAAAAGTATTTTAAAATATTTTAAATTA
Found at i:21998325 original size:24 final size:22
Alignment explanation
Indices: 21998285--21998366 Score: 67
Period size: 24 Copynumber: 3.5 Consensus size: 22
21998275 AAAATATTTT
* *
21998285 AAAA-TTAAAAAAATTTAAAAA
1 AAAATTTAAAATATTTTAAAAA
*
21998306 AAGTATTTTAAAATATTTTAAATTAA
1 AA--AATTTAAAATATTTTAAA--AA
*
21998332 AAAATTAAAAATATTTTAAAATTA
1 AAAATTTAAAATATTTTAAAA--A
21998356 AAAATTTAAAA
1 AAAATTTAAAA
21998367 GTATGTAAAA
Statistics
Matches: 48, Mismatches: 6, Indels: 11
0.74 0.09 0.17
Matches are distributed among these distances:
21 2 0.04
22 1 0.02
23 1 0.02
24 40 0.83
26 4 0.08
ACGTcount: A:0.63, C:0.00, G:0.01, T:0.35
Consensus pattern (22 bp):
AAAATTTAAAATATTTTAAAAA
Found at i:21998338 original size:8 final size:8
Alignment explanation
Indices: 21998325--21998396 Score: 54
Period size: 8 Copynumber: 8.5 Consensus size: 8
21998315 AAAATATTTT
21998325 AAATTAAA
1 AAATTAAA
21998333 AAATTAAA
1 AAATTAAA
**
21998341 AATATTTTA
1 AA-ATTAAA
21998350 AAATTAAA
1 AAATTAAA
*
21998358 AATTTAAA
1 AAATTAAA
*
21998366 AGTATGTAAA
1 A-AAT-TAAA
**
21998376 AATATTTTA
1 AA-ATTAAA
21998385 AAATTAAA
1 AAATTAAA
21998393 AAAT
1 AAAT
21998397 AAATATATTT
Statistics
Matches: 48, Mismatches: 12, Indels: 8
0.71 0.18 0.12
Matches are distributed among these distances:
8 30 0.62
9 11 0.23
10 7 0.15
ACGTcount: A:0.62, C:0.00, G:0.03, T:0.35
Consensus pattern (8 bp):
AAATTAAA
Found at i:21998359 original size:25 final size:24
Alignment explanation
Indices: 21998315--21998366 Score: 86
Period size: 25 Copynumber: 2.1 Consensus size: 24
21998305 AAAGTATTTT
21998315 AAAATATTTTAAATTAAAAAATTA
1 AAAATATTTTAAATTAAAAAATTA
*
21998339 AAAATATTTTAAAATTAAAAATTTA
1 AAAATATTTT-AAATTAAAAAATTA
21998364 AAA
1 AAA
21998367 GTATGTAAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
24 10 0.38
25 16 0.62
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (24 bp):
AAAATATTTTAAATTAAAAAATTA
Found at i:21998375 original size:24 final size:23
Alignment explanation
Indices: 21998312--21998376 Score: 76
Period size: 24 Copynumber: 2.7 Consensus size: 23
21998302 AAAAAAGTAT
*
21998312 TTTAAAATATTTTAAATTAAAAAA
1 TTTAAAATATTTAAAATT-AAAAA
*
21998336 TTAAAAATATTTTAAAATTAAAAA
1 TTTAAAATA-TTTAAAATTAAAAA
*
21998360 TTTAAAAGTATGTAAAA
1 TTTAAAA-TATTTAAAA
21998377 ATATTTTAAA
Statistics
Matches: 35, Mismatches: 4, Indels: 4
0.81 0.09 0.09
Matches are distributed among these distances:
24 25 0.71
25 10 0.29
ACGTcount: A:0.58, C:0.00, G:0.03, T:0.38
Consensus pattern (23 bp):
TTTAAAATATTTAAAATTAAAAA
Found at i:21998377 original size:25 final size:25
Alignment explanation
Indices: 21998325--21998378 Score: 72
Period size: 25 Copynumber: 2.2 Consensus size: 25
21998315 AAAATATTTT
* *
21998325 AAATTAAAAAATTAAAAATATTTTA
1 AAATTAAAAAATTAAAAATATGTAA
* *
21998350 AAATTAAAAATTTAAAAGTATGTAA
1 AAATTAAAAAATTAAAAATATGTAA
21998375 AAAT
1 AAAT
21998379 ATTTTAAAAT
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.63, C:0.00, G:0.04, T:0.33
Consensus pattern (25 bp):
AAATTAAAAAATTAAAAATATGTAA
Found at i:21998394 original size:59 final size:61
Alignment explanation
Indices: 21998272--21998406 Score: 186
Period size: 59 Copynumber: 2.2 Consensus size: 61
21998262 AAAAAGTATT
* *
21998272 TTAAAAATATTTTAAAATTAAAAAAATTTAAAAAAAGTATTTTAAAATATTTTAAATTAAAAAA
1 TTAAAAATATTTTAAAATT-AAAAAATTT--AAAAAGTATGTAAAAATATTTTAAATTAAAAAA
21998336 TTAAAAATATTTTAAAATT-AAAAATTT-AAAAGTATGTAAAAATATTTTAAAATTAAAAAA
1 TTAAAAATATTTTAAAATTAAAAAATTTAAAAAGTATGTAAAAATATTTT-AAATTAAAAAA
*
21998396 -TAAATATATTT
1 TTAAAAATATTT
21998407 ATTATATCGG
Statistics
Matches: 67, Mismatches: 3, Indels: 7
0.87 0.04 0.09
Matches are distributed among these distances:
59 29 0.43
60 11 0.16
62 8 0.12
64 19 0.28
ACGTcount: A:0.59, C:0.00, G:0.02, T:0.39
Consensus pattern (61 bp):
TTAAAAATATTTTAAAATTAAAAAATTTAAAAAGTATGTAAAAATATTTTAAATTAAAAAA
Found at i:22000196 original size:20 final size:21
Alignment explanation
Indices: 22000155--22000197 Score: 54
Period size: 20 Copynumber: 2.1 Consensus size: 21
22000145 TAAAAATGAT
*
22000155 ATTAAATGTTTAATTGATTTA
1 ATTAAATGTTTAAATGATTTA
22000176 ATTAAA-GTTTAAAT-ATATTA
1 ATTAAATGTTTAAATGAT-TTA
22000196 AT
1 AT
22000198 ATCCATATAT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
19 2 0.10
20 12 0.60
21 6 0.30
ACGTcount: A:0.44, C:0.00, G:0.07, T:0.49
Consensus pattern (21 bp):
ATTAAATGTTTAAATGATTTA
Found at i:22002219 original size:79 final size:79
Alignment explanation
Indices: 22002126--22002283 Score: 307
Period size: 79 Copynumber: 2.0 Consensus size: 79
22002116 TATTCTATCA
22002126 ATTTGATCTTAGTTCTAAATAATTCAATAAATTTAACCTTTCACATTTATAAATTCTATCAATTT
1 ATTTGATCTTAGTTCTAAATAATTCAATAAATTTAACCTTTCACATTTATAAATTCTATCAATTT
22002191 GATCATCAAACTTT
66 GATCATCAAACTTT
*
22002205 ATTTGATCTTAGTTCTAAATAATTTAATAAATTTAACCTTTCACATTTATAAATTCTATCAATTT
1 ATTTGATCTTAGTTCTAAATAATTCAATAAATTTAACCTTTCACATTTATAAATTCTATCAATTT
22002270 GATCATCAAACTTT
66 GATCATCAAACTTT
22002284 CTAACCAAAA
Statistics
Matches: 78, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
79 78 1.00
ACGTcount: A:0.37, C:0.15, G:0.04, T:0.45
Consensus pattern (79 bp):
ATTTGATCTTAGTTCTAAATAATTCAATAAATTTAACCTTTCACATTTATAAATTCTATCAATTT
GATCATCAAACTTT
Found at i:22009538 original size:19 final size:19
Alignment explanation
Indices: 22009500--22009538 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
22009490 AAATAGTGAG
*
22009500 AATTTATTTTCTAAGTATA
1 AATTTATTTTCTAAGAATA
22009519 AATTCTATTTTCT-AGAATA
1 AATT-TATTTTCTAAGAATA
22009538 A
1 A
22009539 CAATTCTATC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 10 0.56
20 8 0.44
ACGTcount: A:0.38, C:0.08, G:0.05, T:0.49
Consensus pattern (19 bp):
AATTTATTTTCTAAGAATA
Found at i:22010394 original size:9 final size:9
Alignment explanation
Indices: 22010380--22010428 Score: 82
Period size: 9 Copynumber: 5.4 Consensus size: 9
22010370 GTAGGGATTC
22010380 AATTCGGTT
1 AATTCGGTT
22010389 AATTCGGTT
1 AATTCGGTT
22010398 AATTCGAG-T
1 AATTCG-GTT
22010407 AATTCGGTT
1 AATTCGGTT
22010416 AATTCGGTT
1 AATTCGGTT
22010425 AATT
1 AATT
22010429 TTTAACCAAA
Statistics
Matches: 38, Mismatches: 0, Indels: 4
0.90 0.00 0.10
Matches are distributed among these distances:
8 1 0.03
9 36 0.95
10 1 0.03
ACGTcount: A:0.27, C:0.10, G:0.20, T:0.43
Consensus pattern (9 bp):
AATTCGGTT
Found at i:22018876 original size:29 final size:30
Alignment explanation
Indices: 22018843--22018901 Score: 93
Period size: 29 Copynumber: 2.0 Consensus size: 30
22018833 TTTAGTCTAA
*
22018843 TGTGCAATGTTATATATGGATT-TTGATTT
1 TGTGCAATGTTATATATGAATTGTTGATTT
*
22018872 TGTGCAATTTTATATATGAATTGTTGATTT
1 TGTGCAATGTTATATATGAATTGTTGATTT
22018902 GATTTAATTT
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
29 20 0.74
30 7 0.26
ACGTcount: A:0.25, C:0.03, G:0.19, T:0.53
Consensus pattern (30 bp):
TGTGCAATGTTATATATGAATTGTTGATTT
Found at i:22019131 original size:2 final size:2
Alignment explanation
Indices: 22019124--22019153 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
22019114 TGTAATAGAG
22019124 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
22019154 TTGTTGGATT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:22021932 original size:166 final size:166
Alignment explanation
Indices: 22021734--22022070 Score: 647
Period size: 166 Copynumber: 2.0 Consensus size: 166
22021724 GCCATGTGGT
22021734 TATGTTTGAAGTCGAAGATGATGCTTATTTGTTTAGTAGGTAGGTAATTAACTAGATGAAAGCCT
1 TATGTTTGAAGTCGAAGATGATGCTTATTTGTTTAGTAGGTAGGTAATTAACTAGATGAAAGCCT
*
22021799 TCGCTCTTTAAAGATATGAATAATCTAAGGGTTCTCATAGGTACTTATTGAAACCATGATGGGGC
66 TCGCTCTTTAAAGATATGAATAATCTAAGGGTTCTCATAGGTACTTACTGAAACCATGATGGGGC
*
22021864 TTTGATTAGTGAAGTTATAATGTCTCTTAAGGAATA
131 TTTGATTAGTGAAGTTATAATGTCTCTGAAGGAATA
*
22021900 TATGTTTTAAGTCGAAGATGATGCTTATTTGTTTAGTAGGTAGGTAATTAACTAGATGAAAGCCT
1 TATGTTTGAAGTCGAAGATGATGCTTATTTGTTTAGTAGGTAGGTAATTAACTAGATGAAAGCCT
22021965 TCGCTCTTTAAAGATATGAATAATCTAAGGGTTCTCATAGGTACTTACTGAAACCATGATGGGGC
66 TCGCTCTTTAAAGATATGAATAATCTAAGGGTTCTCATAGGTACTTACTGAAACCATGATGGGGC
22022030 TTTGATTAGTGAAGTTATAATGTCTCTGAAGGAATA
131 TTTGATTAGTGAAGTTATAATGTCTCTGAAGGAATA
22022066 TATGT
1 TATGT
22022071 CTAACATCTT
Statistics
Matches: 168, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
166 168 1.00
ACGTcount: A:0.31, C:0.10, G:0.22, T:0.36
Consensus pattern (166 bp):
TATGTTTGAAGTCGAAGATGATGCTTATTTGTTTAGTAGGTAGGTAATTAACTAGATGAAAGCCT
TCGCTCTTTAAAGATATGAATAATCTAAGGGTTCTCATAGGTACTTACTGAAACCATGATGGGGC
TTTGATTAGTGAAGTTATAATGTCTCTGAAGGAATA
Found at i:22029985 original size:2 final size:2
Alignment explanation
Indices: 22029978--22030007 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
22029968 CCCTCCCCCT
22029978 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
22030008 AATGCAAATG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
TC
Found at i:22032659 original size:21 final size:21
Alignment explanation
Indices: 22032633--22032673 Score: 82
Period size: 21 Copynumber: 2.0 Consensus size: 21
22032623 TGCTGAATAG
22032633 TACTTAGCCTGTGATTTTATT
1 TACTTAGCCTGTGATTTTATT
22032654 TACTTAGCCTGTGATTTTAT
1 TACTTAGCCTGTGATTTTAT
22032674 AGGCATGACA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.20, C:0.15, G:0.15, T:0.51
Consensus pattern (21 bp):
TACTTAGCCTGTGATTTTATT
Found at i:22042456 original size:30 final size:30
Alignment explanation
Indices: 22042420--22042508 Score: 106
Period size: 30 Copynumber: 3.0 Consensus size: 30
22042410 AGAATAAGTT
* *
22042420 GCTCACACAAGCTGACAGTATACCAAGGTC
1 GCTCACACAAGCTGACATTATAACAAGGTC
* ** *
22042450 GCTCACACAAGTTGACATTATAACAAAATT
1 GCTCACACAAGCTGACATTATAACAAGGTC
* *
22042480 GCTCACACAAGCTGATATTATATCAAGGT
1 GCTCACACAAGCTGACATTATAACAAGGT
22042509 TGACCGTCCT
Statistics
Matches: 48, Mismatches: 11, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
30 48 1.00
ACGTcount: A:0.37, C:0.24, G:0.16, T:0.24
Consensus pattern (30 bp):
GCTCACACAAGCTGACATTATAACAAGGTC
Found at i:22048413 original size:178 final size:180
Alignment explanation
Indices: 22048033--22048441 Score: 383
Period size: 178 Copynumber: 2.3 Consensus size: 180
22048023 AGTTCAACTT
* * * * * * * ** *
22048033 CAACATAACAACAATAATCATAATCAGTCAAAGAAATTCTGAACAAAGAAGCTAAACTGAAAGAC
1 CAACACAACAACAATCATCATAATTAATCAAAGTAATTCAGAAGAAAGAAGCTAAACCAAAAAAC
* * * *
22048098 TAGTGGAAAGCAAGATTTAACCTATTACAACAC------GATCACAAGATTGTTTCCGGGACAAA
66 TAATGGAAAGCAAGATTCAACCTATTTCAACACATAGATGATCACAAGATTGTTT-CAGGACAAA
* * * * ** *
22048157 GTTCTGGAGTTTGAATTGTGTATAAATGAAGACCTATTTTTGTAAGTAGTC
130 GTTCAGCAGTTCGAATTGTGTATAAATCAAGACCTATTTACGTAAGCAGTC
* * * *
22048208 CAACACAACAACTA-CTATCACAATTAATCCATAGTAATTCAGATGAAAGAAGCTAAACCAAAAA
1 CAACACAACAACAATC-ATCATAATTAAT-CAAAGTAATTCAGAAGAAAGAAGCTAAACCAAAAA
* *
22048272 ACTAATTGAAAGCAAGATTCAAGCTATTTCAACACATAGATGATCACAA-ATTGTTTCAGGCACA
64 ACTAATGGAAAGCAAGATTCAACCTATTTCAACACATAGATGATCACAAGATTGTTTCAGG-ACA
* * * *
22048336 AAGTTCAGGAGTTCGAATTG-G-GT-AATCAAGACCTATATACGTAACCAGTC
128 AAGTTCAGCAGTTCGAATTGTGTATAAATCAAGACCTATTTACGTAAGCAGTC
* *
22048386 AAACACAACAACAATCATCATAATTAATAACAAA-TAATTAAGAAGAAAGAAGCTAA
1 CAACACAACAACAATCATCATAATTAAT--CAAAGTAATTCAGAAGAAAGAAGCTAA
22048442 GCAACAACTC
Statistics
Matches: 187, Mismatches: 36, Indels: 19
0.77 0.15 0.08
Matches are distributed among these distances:
175 21 0.11
176 57 0.30
178 64 0.34
179 5 0.03
180 4 0.02
181 28 0.15
182 8 0.04
ACGTcount: A:0.44, C:0.17, G:0.14, T:0.24
Consensus pattern (180 bp):
CAACACAACAACAATCATCATAATTAATCAAAGTAATTCAGAAGAAAGAAGCTAAACCAAAAAAC
TAATGGAAAGCAAGATTCAACCTATTTCAACACATAGATGATCACAAGATTGTTTCAGGACAAAG
TTCAGCAGTTCGAATTGTGTATAAATCAAGACCTATTTACGTAAGCAGTC
Found at i:22052307 original size:27 final size:27
Alignment explanation
Indices: 22052254--22052317 Score: 74
Period size: 27 Copynumber: 2.4 Consensus size: 27
22052244 TAAAAAAATA
**** *
22052254 ACCAAAATATTATAAATTTTTTTATTT
1 ACCAAAATATTATAAAAAAATTCATTT
22052281 ACCAAAATATTATAAAAAAATTCATTT
1 ACCAAAATATTATAAAAAAATTCATTT
*
22052308 ATCAAAATAT
1 ACCAAAATAT
22052318 ACCAAAAAAA
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 31 1.00
ACGTcount: A:0.50, C:0.09, G:0.00, T:0.41
Consensus pattern (27 bp):
ACCAAAATATTATAAAAAAATTCATTT
Done.