Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr09 ID=Chr09-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 70713020
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 1142373 characters in sequence are not A, C, G, or T
File 61 of 226
Found at i:23949249 original size:42 final size:43
Alignment explanation
Indices: 23949154--23949266 Score: 120
Period size: 42 Copynumber: 2.7 Consensus size: 43
23949144 AACAAAAACG
* * * * *
23949154 CCGCTAAAGACCATGGTCTTTAGCGGCGTTTTTTTTCTAGGCG
1 CCGCTAAAGAACATAGTCTTTAGCGGCGTTTTTTTCCTAAGCC
* * * *
23949197 CCTCTGAAGAACATATTTTTTAGCGGC-TTTTTTTCCTAAGCC
1 CCGCTAAAGAACATAGTCTTTAGCGGCGTTTTTTTCCTAAGCC
* *
23949239 CCGCTAAAGAACATGGTATTTAGCGGCG
1 CCGCTAAAGAACATAGTCTTTAGCGGCG
23949267 CTTGTAAAAA
Statistics
Matches: 55, Mismatches: 14, Indels: 2
0.77 0.20 0.03
Matches are distributed among these distances:
42 34 0.62
43 21 0.38
ACGTcount: A:0.21, C:0.23, G:0.22, T:0.34
Consensus pattern (43 bp):
CCGCTAAAGAACATAGTCTTTAGCGGCGTTTTTTTCCTAAGCC
Found at i:23949616 original size:21 final size:21
Alignment explanation
Indices: 23949590--23949660 Score: 97
Period size: 21 Copynumber: 3.4 Consensus size: 21
23949580 TTTTGCTCTG
*
23949590 CTCTGCTTCTCTCGCTGCAGC
1 CTCTGCTTCCCTCGCTGCAGC
*
23949611 CTCTGCTTCCCTCTCTGCAGC
1 CTCTGCTTCCCTCGCTGCAGC
* * *
23949632 CGCTGCTTCCCTCGCTTCCGC
1 CTCTGCTTCCCTCGCTGCAGC
23949653 CTCTGCTT
1 CTCTGCTT
23949661 TAAGTTGTAG
Statistics
Matches: 43, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 43 1.00
ACGTcount: A:0.03, C:0.46, G:0.17, T:0.34
Consensus pattern (21 bp):
CTCTGCTTCCCTCGCTGCAGC
Found at i:23954586 original size:53 final size:54
Alignment explanation
Indices: 23954493--23954599 Score: 144
Period size: 53 Copynumber: 2.0 Consensus size: 54
23954483 CCTTAAATGC
* * **
23954493 TTACGAATTGATTAAATAATTTTTATTAAATTATTATAATAAATAATGTAAAAT
1 TTACGAATTGATCAAATAAATTTTATTAAATTACCATAATAAATAATGTAAAAT
* * *
23954547 TTACGAATTGATCAAA-AAATTTTATTTAATTACCATAATAATTCATGTAAAAT
1 TTACGAATTGATCAAATAAATTTTATTAAATTACCATAATAAATAATGTAAAAT
23954600 ATGAAATGAA
Statistics
Matches: 46, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
53 31 0.67
54 15 0.33
ACGTcount: A:0.47, C:0.06, G:0.06, T:0.42
Consensus pattern (54 bp):
TTACGAATTGATCAAATAAATTTTATTAAATTACCATAATAAATAATGTAAAAT
Found at i:23954970 original size:20 final size:21
Alignment explanation
Indices: 23954947--23954991 Score: 58
Period size: 19 Copynumber: 2.2 Consensus size: 21
23954937 TTAAAAATGA
23954947 AAAAGAATACAAAAA-ATATT-
1 AAAA-AATACAAAAATATATTG
*
23954967 AAAAATTACAAAAATATATTG
1 AAAAAATACAAAAATATATTG
23954988 AAAA
1 AAAA
23954992 TATTAAATTA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
19 9 0.41
20 9 0.41
21 4 0.18
ACGTcount: A:0.69, C:0.04, G:0.04, T:0.22
Consensus pattern (21 bp):
AAAAAATACAAAAATATATTG
Found at i:23954982 original size:27 final size:28
Alignment explanation
Indices: 23954937--23955024 Score: 67
Period size: 28 Copynumber: 3.1 Consensus size: 28
23954927 TATAAAATCT
* *
23954937 TTAAAAATGAAAAAGAATACA-AAAAATA
1 TTAAAAATTACAAA-AATACATAAAAATA
* *
23954965 TTAAAAATTACAAAAATATATTGAAAATA
1 TTAAAAATTACAAAAATACA-TAAAAATA
*
23954994 TT--AAATTACAAAAAAAACTATAAAAAT-
1 TTAAAAATTAC-AAAAATAC-ATAAAAATA
23955021 TTAA
1 TTAA
23955025 TAAAATTTCA
Statistics
Matches: 47, Mismatches: 7, Indels: 11
0.72 0.11 0.17
Matches are distributed among these distances:
27 14 0.30
28 24 0.51
29 9 0.19
ACGTcount: A:0.66, C:0.05, G:0.03, T:0.26
Consensus pattern (28 bp):
TTAAAAATTACAAAAATACATAAAAATA
Found at i:23954992 original size:20 final size:19
Alignment explanation
Indices: 23954954--23954992 Score: 60
Period size: 20 Copynumber: 2.0 Consensus size: 19
23954944 TGAAAAAGAA
23954954 TACAAAAAATATTAAAAAT
1 TACAAAAAATATTAAAAAT
*
23954973 TACAAAAATATATTGAAAAT
1 TACAAAAA-ATATTAAAAAT
23954993 ATTAAATTAC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 8 0.44
20 10 0.56
ACGTcount: A:0.64, C:0.05, G:0.03, T:0.28
Consensus pattern (19 bp):
TACAAAAAATATTAAAAAT
Found at i:23955051 original size:17 final size:19
Alignment explanation
Indices: 23955019--23955056 Score: 62
Period size: 17 Copynumber: 2.1 Consensus size: 19
23955009 AACTATAAAA
23955019 ATTTAATAAAATTTCAAAT
1 ATTTAATAAAATTTCAAAT
23955038 ATTTAAT-AAA-TTCAAAT
1 ATTTAATAAAATTTCAAAT
23955055 AT
1 AT
23955057 CCTACAAATA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 9 0.47
18 3 0.16
19 7 0.37
ACGTcount: A:0.53, C:0.05, G:0.00, T:0.42
Consensus pattern (19 bp):
ATTTAATAAAATTTCAAAT
Found at i:23955249 original size:15 final size:14
Alignment explanation
Indices: 23955225--23955254 Score: 51
Period size: 15 Copynumber: 2.1 Consensus size: 14
23955215 ATATAATAAA
23955225 TAAATAAATTGAAC
1 TAAATAAATTGAAC
23955239 TAAACTAAATTGAAC
1 TAAA-TAAATTGAAC
23955254 T
1 T
23955255 TCTTTTATTT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 4 0.27
15 11 0.73
ACGTcount: A:0.53, C:0.10, G:0.07, T:0.30
Consensus pattern (14 bp):
TAAATAAATTGAAC
Found at i:23970255 original size:6 final size:6
Alignment explanation
Indices: 23970246--23970279 Score: 50
Period size: 6 Copynumber: 5.5 Consensus size: 6
23970236 AAAAAAAGGG
*
23970246 GAAAAA GAAAAA AAAGAAA GAAAAA GAAAAA GAA
1 GAAAAA GAAAAA GAA-AAA GAAAAA GAAAAA GAA
23970280 CCCCGCTGGG
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
6 20 0.80
7 5 0.20
ACGTcount: A:0.82, C:0.00, G:0.18, T:0.00
Consensus pattern (6 bp):
GAAAAA
Found at i:23971225 original size:43 final size:43
Alignment explanation
Indices: 23971177--23971258 Score: 164
Period size: 43 Copynumber: 1.9 Consensus size: 43
23971167 TACTTCATTC
23971177 TTTTCCAAGATACGCATTCCCAATCAATTTCTTTGTTATATTA
1 TTTTCCAAGATACGCATTCCCAATCAATTTCTTTGTTATATTA
23971220 TTTTCCAAGATACGCATTCCCAATCAATTTCTTTGTTAT
1 TTTTCCAAGATACGCATTCCCAATCAATTTCTTTGTTAT
23971259 CTTTCTTTAC
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 39 1.00
ACGTcount: A:0.27, C:0.22, G:0.07, T:0.44
Consensus pattern (43 bp):
TTTTCCAAGATACGCATTCCCAATCAATTTCTTTGTTATATTA
Found at i:23972273 original size:131 final size:132
Alignment explanation
Indices: 23972033--23972505 Score: 723
Period size: 132 Copynumber: 3.6 Consensus size: 132
23972023 TCGAAGATAC
* *
23972033 TAATTCTATCTCCCTGGTTGGCAGTGGAATAGATTGAAAATTTCAGATCTTATCTCCCTAGGCAT
1 TAATTCTATCTCCCTGGTCGACAGTGGAATAGATTGAAAATTTCAGATCTTATCTCCCTAGGCAT
* *
23972098 TAGTGGAGTAGATCGAAGATGGCAGATTTTACCTCACTGTGGTTACAGTGGAGTACATTGAAGCC
66 TAGTGGAGTAGATCGAAGATGGCAGATTTTACCTCCCTGAGGTTACAGTGGAGTACATTGAAGCC
23972163 -G
131 AG
* * *
23972164 TAATTCTATCTCCCTGGTTGGCAGTGGAATAGATTGAATATTTCAGATCTTATCTCCCTAGGCAT
1 TAATTCTATCTCCCTGGTCGACAGTGGAATAGATTGAAAATTTCAGATCTTATCTCCCTAGGCAT
* *
23972229 TAGTGGAGCAGATCGAAGATGGTAGATTTTACCTCCCTGAGGTTACAGTGGAGTACATTGAAGCC
66 TAGTGGAGTAGATCGAAGATGGCAGATTTTACCTCCCTGAGGTTACAGTGGAGTACATTGAAGCC
23972294 AG
131 AG
* * * * *
23972296 TAATTTTATCTCCCTGGGCAACAGTGGAATAGATTGAACATTACAGATCTTATCTCCCTAGGCAT
1 TAATTCTATCTCCCTGGTCGACAGTGGAATAGATTGAAAATTTCAGATCTTATCTCCCTAGGCAT
*
23972361 TAGTGGAGTAGATCGAATATGGCAGATTTTACCTCCCTGAGGTTACAGTGGAGTACATTGAAGCC
66 TAGTGGAGTAGATCGAAGATGGCAGATTTTACCTCCCTGAGGTTACAGTGGAGTACATTGAAGCC
23972426 AG
131 AG
* ** ** * *
23972428 TAATTCTATCTCCCTGGTCGACAGTGGAATCGATCAAAGAATAGCAGATCTTATCTCCTTAAGCA
1 TAATTCTATCTCCCTGGTCGACAGTGGAATAGATTGAA-AATTTCAGATCTTATCTCCCTAGGCA
*
23972493 GTAGTGGAGTAGA
65 TTAGTGGAGTAGA
23972506 CTGACGTCGG
Statistics
Matches: 313, Mismatches: 27, Indels: 2
0.92 0.08 0.01
Matches are distributed among these distances:
131 125 0.40
132 155 0.50
133 33 0.11
ACGTcount: A:0.28, C:0.18, G:0.23, T:0.30
Consensus pattern (132 bp):
TAATTCTATCTCCCTGGTCGACAGTGGAATAGATTGAAAATTTCAGATCTTATCTCCCTAGGCAT
TAGTGGAGTAGATCGAAGATGGCAGATTTTACCTCCCTGAGGTTACAGTGGAGTACATTGAAGCC
AG
Found at i:23972387 original size:44 final size:43
Alignment explanation
Indices: 23972055--23972398 Score: 168
Period size: 44 Copynumber: 7.8 Consensus size: 43
23972045 CCTGGTTGGC
* ** *
23972055 AGTGGAATAGATTGAAAATTTCAGATCTTATCTCCCTAGGCATT
1 AGTGGAGTAGATTG-AAATGGCAGATTTTATCTCCCTAGGCATT
* * * *
23972099 AGTGGAGTAGATCGAAGATGGCAGATTTTACCTCACT-GTG-GTT
1 AGTGGAGTAGATTGAA-ATGGCAGATTTTATCTCCCTAG-GCATT
* *** * *
23972142 ACAGTGGAGTACATTGAAGCCGTA-ATTCTATCTCCCT-GG--TT
1 --AGTGGAGTAGATTGAAATGGCAGATTTTATCTCCCTAGGCATT
* ** *
23972183 GGCAGTGGAATAGATTGAATATTTCAGATCTTATCTCCCTAGGCATT
1 ---AGTGGAGTAGATTGAA-ATGGCAGATTTTATCTCCCTAGGCATT
* * * *
23972230 AGTGGAGCAGATCGAAGATGGTAGATTTTACCTCCCTGAGG--TT
1 AGTGGAGTAGATTGAA-ATGGCAGATTTTATCTCCCT-AGGCATT
* * * **
23972273 ACAGTGGAGTACATTG-AA-GCCAGTAATTTTATCTCCCTGGGCAAC
1 --AGTGGAGTAGATTGAAATGGCAG--ATTTTATCTCCCTAGGCATT
* ** *
23972318 AGTGGAATAGATTGAACATTACAGATCTTATCTCCCTAGGCATT
1 AGTGGAGTAGATTGAA-ATGGCAGATTTTATCTCCCTAGGCATT
* *
23972362 AGTGGAGTAGATCGAATATGGCAGATTTTACCTCCCT
1 AGTGGAGTAGATTGAA-ATGGCAGATTTTATCTCCCT
23972399 GAGGTTACAG
Statistics
Matches: 220, Mismatches: 60, Indels: 40
0.69 0.19 0.12
Matches are distributed among these distances:
41 2 0.01
42 19 0.09
43 34 0.15
44 129 0.59
45 31 0.14
46 3 0.01
47 2 0.01
ACGTcount: A:0.28, C:0.18, G:0.23, T:0.31
Consensus pattern (43 bp):
AGTGGAGTAGATTGAAATGGCAGATTTTATCTCCCTAGGCATT
Found at i:23972441 original size:44 final size:44
Alignment explanation
Indices: 23972261--23972443 Score: 130
Period size: 44 Copynumber: 4.2 Consensus size: 44
23972251 TAGATTTTAC
*
23972261 CTCCCTGAGGTTACAGTGGAGTACATTGAAGCCAGTAATTTTAT
1 CTCCCTGAGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTAT
** * * * *
23972305 CTCCCTG-GGCAACAGTGGAATAGATTGAA--CATTACAGATCTTAT
1 CTCCCTGAGGTTACAGTGGAGTACATTGAAGCCAGTA-A-TTC-TAT
* * * * *
23972349 CTCCCT-AGGCATT--AGTGGAGTAGATCGAATATGGCAG--ATTTTAC
1 CTCCCTGAGG--TTACAGTGGAGTACATTG-A-A-GCCAGTAATTCTAT
23972393 CTCCCTGAGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTAT
1 CTCCCTGAGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTAT
23972437 CTCCCTG
1 CTCCCTG
23972444 GTCGACAGTG
Statistics
Matches: 103, Mismatches: 20, Indels: 32
0.66 0.13 0.21
Matches are distributed among these distances:
41 4 0.04
42 5 0.05
43 22 0.21
44 51 0.50
45 17 0.17
46 2 0.02
49 2 0.02
ACGTcount: A:0.27, C:0.21, G:0.22, T:0.30
Consensus pattern (44 bp):
CTCCCTGAGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTAT
Found at i:23972455 original size:88 final size:90
Alignment explanation
Indices: 23972083--23972455 Score: 235
Period size: 88 Copynumber: 4.3 Consensus size: 90
23972073 TTTCAGATCT
* * * *
23972083 TATCTCCCTAGG-C-ATTAGTGGAGTAGATCGAAGATGGCAGATTTTACCTCACTGTGGTTACAG
1 TATCTCCCTAGGTCGA-CAGTGGAGTAGATCGAATATGGCAGATTTTACCTCCCTGAGGTTACAG
23972146 TGGAGTACATTGAAGCC-GTA-ATTC
65 TGGAGTACATTGAAGCCAGTACATTC
* * * * ** * *
23972170 TATCTCCCT-GGTTGGCAGTGGAATAGATTGAATATTTCAGATCTTATCTCCCT-AGGCATT--A
1 TATCTCCCTAGGTCGACAGTGGAGTAGATCGAATATGGCAGATTTTACCTCCCTGAGG--TTACA
* * * *** * *
23972231 GTGGAGCAGATCGAAGATGGTAGATTT
64 GTGGAGTACATTGAAGCCAGTACATTC
* * * * * * **
23972258 TACCTCCCTGAGGT-TACAGTGGAGTACATTG-A-A-GCCAGTAATTTTATCTCCCTG-GGCAAC
1 TATCTCCCT-AGGTCGACAGTGGAGTAGATCGAATATGGCAG--ATTTTACCTCCCTGAGGTTAC
* * * *
23972318 AGTGGAATAGATTGAA--CATTACAGATC
63 AGTGGAGTACATTGAAGCCAGTACA-TTC
*
23972345 TTATCTCCCTAGG-C-ATTAGTGGAGTAGATCGAATATGGCAGATTTTACCTCCCTGAGGTTACA
1 -TATCTCCCTAGGTCGA-CAGTGGAGTAGATCGAATATGGCAGATTTTACCTCCCTGAGGTTACA
23972408 GTGGAGTACATTGAAGCCAGTA-ATTC
64 GTGGAGTACATTGAAGCCAGTACATTC
23972434 TATCTCCCT-GGTCGACAGTGGA
1 TATCTCCCTAGGTCGACAGTGGA
23972456 ATCGATCAAA
Statistics
Matches: 211, Mismatches: 50, Indels: 49
0.68 0.16 0.16
Matches are distributed among these distances:
86 25 0.12
87 60 0.28
88 79 0.37
89 35 0.17
90 8 0.04
91 4 0.02
ACGTcount: A:0.27, C:0.19, G:0.24, T:0.30
Consensus pattern (90 bp):
TATCTCCCTAGGTCGACAGTGGAGTAGATCGAATATGGCAGATTTTACCTCCCTGAGGTTACAGT
GGAGTACATTGAAGCCAGTACATTC
Found at i:23972611 original size:50 final size:50
Alignment explanation
Indices: 23972546--23972890 Score: 278
Period size: 50 Copynumber: 6.9 Consensus size: 50
23972536 GCGCAATTAA
* * *
23972546 AAGATTGAAGCCACAACGGCCGATCTTACTTCCCTGGCGGTGCAGCGGAG
1 AAGATTGAAGCCACAACGGCAGATCTTATTTCCCTGGCAGTGCAGCGGAG
* * ** * **** *
23972596 TAGATTGAAGTCACAACGGCAGATCTGGTTT-CCTCGACAGTGCAATTAAA
1 AAGATTGAAGCCACAACGGCAGATCTTATTTCCCT-GGCAGTGCAGCGGAG
* *
23972646 AAGATTGAAGCCACAACGGCAGATCTTATTTCCCTGGCGGTGCAGCAGAG
1 AAGATTGAAGCCACAACGGCAGATCTTATTTCCCTGGCAGTGCAGCGGAG
* * ** * * * **** *
23972696 CAGATTGAAGTCACAACGGCAGATCTGGTTTCCCTGACAGCGTAATTAAA
1 AAGATTGAAGCCACAACGGCAGATCTTATTTCCCTGGCAGTGCAGCGGAG
*
23972746 AAGATTGAAGCCACAACGGCGGATCTTATTTCCCTGGCAGTGCAGCGGAG
1 AAGATTGAAGCCACAACGGCAGATCTTATTTCCCTGGCAGTGCAGCGGAG
* * ** * * * **** *
23972796 CAGATTGAAGTCACAACGGCAGATCTGGTTTCCCCGACAGCGCAATTAAA
1 AAGATTGAAGCCACAACGGCAGATCTTATTTCCCTGGCAGTGCAGCGGAG
* * * *
23972846 AAGATTGAAGCCACAACGGCGGATCTTACTTCCTTAGCAGTGCAG
1 AAGATTGAAGCCACAACGGCAGATCTTATTTCCCTGGCAGTGCAG
23972891 TTGAACAAAT
Statistics
Matches: 218, Mismatches: 75, Indels: 4
0.73 0.25 0.01
Matches are distributed among these distances:
49 3 0.01
50 212 0.97
51 3 0.01
ACGTcount: A:0.29, C:0.24, G:0.26, T:0.21
Consensus pattern (50 bp):
AAGATTGAAGCCACAACGGCAGATCTTATTTCCCTGGCAGTGCAGCGGAG
Found at i:23972690 original size:100 final size:100
Alignment explanation
Indices: 23972518--23972878 Score: 616
Period size: 100 Copynumber: 3.6 Consensus size: 100
23972508 GACGTCGGTG
*
23972518 GATCTGGTTTCCCCGACAGCGCAATT-AAAAGATTGAAGCCACAACGGCCGATCTTACTTCCCTG
1 GATCTGGTTTCCCCGACAGCGCAATTAAAAAGATTGAAGCCACAACGGCGGATCTTACTTCCCTG
*
23972582 GCGGTGCAGCGGAGTAGATTGAAGTCACAACGGCA
66 GCGGTGCAGCGGAGCAGATTGAAGTCACAACGGCA
* * * *
23972617 GATCTGGTTTCCTCGACAGTGCAATTAAAAAGATTGAAGCCACAACGGCAGATCTTATTTCCCTG
1 GATCTGGTTTCCCCGACAGCGCAATTAAAAAGATTGAAGCCACAACGGCGGATCTTACTTCCCTG
*
23972682 GCGGTGCAGCAGAGCAGATTGAAGTCACAACGGCA
66 GCGGTGCAGCGGAGCAGATTGAAGTCACAACGGCA
* * *
23972717 GATCTGGTTTCCCTGACAGCGTAATTAAAAAGATTGAAGCCACAACGGCGGATCTTATTTCCCTG
1 GATCTGGTTTCCCCGACAGCGCAATTAAAAAGATTGAAGCCACAACGGCGGATCTTACTTCCCTG
*
23972782 GCAGTGCAGCGGAGCAGATTGAAGTCACAACGGCA
66 GCGGTGCAGCGGAGCAGATTGAAGTCACAACGGCA
23972817 GATCTGGTTTCCCCGACAGCGCAATTAAAAAGATTGAAGCCACAACGGCGGATCTTACTTCC
1 GATCTGGTTTCCCCGACAGCGCAATTAAAAAGATTGAAGCCACAACGGCGGATCTTACTTCC
23972879 TTAGCAGTGC
Statistics
Matches: 245, Mismatches: 16, Indels: 1
0.94 0.06 0.00
Matches are distributed among these distances:
99 24 0.10
100 221 0.90
ACGTcount: A:0.29, C:0.25, G:0.25, T:0.22
Consensus pattern (100 bp):
GATCTGGTTTCCCCGACAGCGCAATTAAAAAGATTGAAGCCACAACGGCGGATCTTACTTCCCTG
GCGGTGCAGCGGAGCAGATTGAAGTCACAACGGCA
Found at i:23977166 original size:37 final size:38
Alignment explanation
Indices: 23977125--23977205 Score: 101
Period size: 38 Copynumber: 2.2 Consensus size: 38
23977115 TGGCGTGTAA
**
23977125 GGTGGATGAGCCAATTATGGTTC-TATGTGGTGTGCAG
1 GGTGGATGAGCCAATTATGGCCCTTATGTGGTGTGCAG
* ** *
23977162 GGTGGATGGGCCTTTTGTGGCCCTTATGTGGTGTGCAG
1 GGTGGATGAGCCAATTATGGCCCTTATGTGGTGTGCAG
23977200 GGTGGA
1 GGTGGA
23977206 CGAAGCGGTG
Statistics
Matches: 37, Mismatches: 6, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
37 17 0.46
38 20 0.54
ACGTcount: A:0.14, C:0.12, G:0.42, T:0.32
Consensus pattern (38 bp):
GGTGGATGAGCCAATTATGGCCCTTATGTGGTGTGCAG
Found at i:23981134 original size:32 final size:29
Alignment explanation
Indices: 23981060--23981136 Score: 82
Period size: 32 Copynumber: 2.6 Consensus size: 29
23981050 TTGAGGGTCC
*
23981060 AATTAAAATTTTTAAATTTTTGTGAGATT
1 AATTAAAATTTTCAAATTTTTGTGAGATT
* * *
23981089 AATGAGAATTTTCAAATATTTTAAGTGAGCTT
1 AATTAAAATTTTCAAAT-TTTT--GTGAGATT
*
23981121 AATTAAAAATTTCAAA
1 AATTAAAATTTTCAAA
23981137 AAAATTAAAA
Statistics
Matches: 38, Mismatches: 7, Indels: 3
0.79 0.15 0.06
Matches are distributed among these distances:
29 14 0.37
30 4 0.11
32 20 0.53
ACGTcount: A:0.43, C:0.04, G:0.10, T:0.43
Consensus pattern (29 bp):
AATTAAAATTTTCAAATTTTTGTGAGATT
Found at i:23984550 original size:17 final size:17
Alignment explanation
Indices: 23984512--23984553 Score: 50
Period size: 17 Copynumber: 2.5 Consensus size: 17
23984502 TTTGATATAA
* *
23984512 ATAAAATAAATATTTAGC
1 ATAAAA-AAAAATTAAGC
23984530 -TAAAAAAAAATTAAGC
1 ATAAAAAAAAATTAAGC
23984546 ATAAAAAA
1 ATAAAAAA
23984554 TTTGGAACTA
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
16 9 0.43
17 12 0.57
ACGTcount: A:0.67, C:0.05, G:0.05, T:0.24
Consensus pattern (17 bp):
ATAAAAAAAAATTAAGC
Found at i:23996814 original size:21 final size:21
Alignment explanation
Indices: 23996788--23996842 Score: 94
Period size: 21 Copynumber: 2.6 Consensus size: 21
23996778 ACCATTGTTT
23996788 CTAATCTCACCGCTACAGT-A
1 CTAATCTCACCGCTACAGTAA
23996808 CTCAATCTCACCGCTACAGTAA
1 CT-AATCTCACCGCTACAGTAA
23996830 CTAATCTCACCGC
1 CTAATCTCACCGC
23996843 CACCGCTGTT
Statistics
Matches: 33, Mismatches: 0, Indels: 3
0.92 0.00 0.08
Matches are distributed among these distances:
20 2 0.06
21 28 0.85
22 3 0.09
ACGTcount: A:0.29, C:0.38, G:0.09, T:0.24
Consensus pattern (21 bp):
CTAATCTCACCGCTACAGTAA
Found at i:23997624 original size:9 final size:9
Alignment explanation
Indices: 23997595--23997634 Score: 53
Period size: 9 Copynumber: 4.2 Consensus size: 9
23997585 AAATAATCTT
23997595 TTTTTTATA
1 TTTTTTATA
23997604 TTATTTTGATA
1 TT-TTTT-ATA
23997615 TTTTTTATA
1 TTTTTTATA
*
23997624 TTTTTTTTA
1 TTTTTTATA
23997633 TT
1 TT
23997635 ATAATATTTT
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
9 15 0.54
10 8 0.29
11 5 0.18
ACGTcount: A:0.20, C:0.00, G:0.03, T:0.78
Consensus pattern (9 bp):
TTTTTTATA
Found at i:24005871 original size:2 final size:2
Alignment explanation
Indices: 24005864--24005888 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
24005854 GTCATTATGA
24005864 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
24005889 ATCATCCATG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:24009925 original size:278 final size:276
Alignment explanation
Indices: 24009407--24009958 Score: 876
Period size: 278 Copynumber: 2.0 Consensus size: 276
24009397 TAAGCCTTTG
* * * *
24009407 GCCAATTAAAAACTTGTAGCGATAAGACTTTTACAATTTAGTCCTTGTACTAAAATTACCTATTA
1 GCCAATTAAAAACCTATAGCGATAAGACTTTTACAATTTAGTCATTGTACTAAAATTAACTATTA
*
24009472 ATTCTACAAAATTACTGGACAAAACTTTAATATATTTTTTACACCAAGTCCGTAAATATTCATAT
66 ATTCTACAAAATTACTGGACAAAACTTTAATATATTTTTTACACCAAGTCCGTAAATATTCAAAT
* **
24009537 TAATATTTATGGACCCGATTTATGGAAATGAGGTTCCAAAATTGCCTTTTCTAGCACCATTAAAA
131 TAATATTTATGGACCAGATTTATGGAAATGAGGTTCCAAAATCACCTTTTCTAGCACCATTAAAA
*
24009602 ATCTGACTGTTACATACACACTGCCGGACCTACCACGTCTCACTGGCTTGAAAAGAAACT-TGCA
196 ATCGGACTGTTACATACACACTGCCGGACCTACCACGTCTCACTGGCTTGAAAAGAAA-TGTGCA
24009666 CGTAGCCCTTAAATTTT
260 CGTAGCCCTTAAATTTT
* *
24009683 GCCAATTAAAAACCTATAGTGGTAAGACTTTTACAATTTAGTCATTGTACTAAAATTAACTATTA
1 GCCAATTAAAAACCTATAGCGATAAGACTTTTACAATTTAGTCATTGTACTAAAATTAACTATTA
*
24009748 ATTCTACAAAATTACTGGACAAAACTTTAATATATATTTTTACACCAAGTCTGTAAATATTCAAA
66 ATTCTACAAAATTACTGGACAAAACTTTAATATAT-TTTTTACACCAAGTCCGTAAATATTCAAA
*
24009813 CTTAATATTTATGGACCTAG-TTTAT-GAAATTGGGGTTCCAAAATCACCTTTTCTAGCACCATT
130 -TTAATATTTATGGACC-AGATTTATGGAAA-TGAGGTTCCAAAATCACCTTTTCTAGCACCATT
* * * *
24009876 GAAAATCGGGCTGTTACATACACACTGCCGGACTTACCACGTGTCACTGGCTTGAAAAGAAATGT
192 AAAAATCGGACTGTTACATACACACTGCCGGACCTACCACGTCTCACTGGCTTGAAAAGAAATGT
*
24009941 GCACGTAGCCCTTCAATT
257 GCACGTAGCCCTTAAATT
24009959 CTGAGTTCCT
Statistics
Matches: 253, Mismatches: 18, Indels: 8
0.91 0.06 0.03
Matches are distributed among these distances:
276 94 0.37
277 32 0.13
278 126 0.50
279 1 0.00
ACGTcount: A:0.35, C:0.20, G:0.13, T:0.33
Consensus pattern (276 bp):
GCCAATTAAAAACCTATAGCGATAAGACTTTTACAATTTAGTCATTGTACTAAAATTAACTATTA
ATTCTACAAAATTACTGGACAAAACTTTAATATATTTTTTACACCAAGTCCGTAAATATTCAAAT
TAATATTTATGGACCAGATTTATGGAAATGAGGTTCCAAAATCACCTTTTCTAGCACCATTAAAA
ATCGGACTGTTACATACACACTGCCGGACCTACCACGTCTCACTGGCTTGAAAAGAAATGTGCAC
GTAGCCCTTAAATTTT
Found at i:24011670 original size:40 final size:40
Alignment explanation
Indices: 24011626--24011704 Score: 113
Period size: 40 Copynumber: 2.0 Consensus size: 40
24011616 TCCTGAATAA
* *
24011626 GTGCTCCTAATAGTACTTTCGTACTCCTGTTAACACTACG
1 GTGCTCCTAATAGCACATTCGTACTCCTGTTAACACTACG
* * *
24011666 GTGCTCCTGATAGCACATTCGTGCTCCTGTTAGCACTAC
1 GTGCTCCTAATAGCACATTCGTACTCCTGTTAACACTAC
24011705 AATGCTCTAG
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
40 34 1.00
ACGTcount: A:0.20, C:0.29, G:0.18, T:0.33
Consensus pattern (40 bp):
GTGCTCCTAATAGCACATTCGTACTCCTGTTAACACTACG
Found at i:24011711 original size:20 final size:19
Alignment explanation
Indices: 24011649--24011704 Score: 67
Period size: 20 Copynumber: 2.8 Consensus size: 19
24011639 TACTTTCGTA
*
24011649 CTCCTGTTAACACTACGGTG
1 CTCCTGTTAGCACTAC-GTG
* *
24011669 CTCCTGATAGCACATTCGTG
1 CTCCTGTTAGCAC-TACGTG
24011689 CTCCTGTTAGCACTAC
1 CTCCTGTTAGCACTAC
24011705 AATGCTCTAG
Statistics
Matches: 30, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
19 2 0.07
20 26 0.87
21 2 0.07
ACGTcount: A:0.20, C:0.32, G:0.18, T:0.30
Consensus pattern (19 bp):
CTCCTGTTAGCACTACGTG
Found at i:24011711 original size:40 final size:40
Alignment explanation
Indices: 24011627--24011720 Score: 109
Period size: 40 Copynumber: 2.4 Consensus size: 40
24011617 CCTGAATAAG
* * * **
24011627 TGCTCCTAATAGTACTTTCGTACTCCTGTTAACACTACGG
1 TGCTCCTGATAGCACATTCGTACTCCTGTTAACACTACAA
* *
24011667 TGCTCCTGATAGCACATTCGTGCTCCTGTTAGCACTACAA
1 TGCTCCTGATAGCACATTCGTACTCCTGTTAACACTACAA
24011707 TGCT-CTAGATAGCA
1 TGCTCCT-GATAGCA
24011721 TATTTATGCT
Statistics
Matches: 46, Mismatches: 7, Indels: 2
0.84 0.13 0.04
Matches are distributed among these distances:
39 2 0.04
40 44 0.96
ACGTcount: A:0.23, C:0.28, G:0.17, T:0.32
Consensus pattern (40 bp):
TGCTCCTGATAGCACATTCGTACTCCTGTTAACACTACAA
Found at i:24011731 original size:40 final size:40
Alignment explanation
Indices: 24011649--24011749 Score: 96
Period size: 40 Copynumber: 2.5 Consensus size: 40
24011639 TACTTTCGTA
* ** *
24011649 CTCCTGTTAACACTACGGTGCTCCTGATAGCACATTCGTG
1 CTCCTGTTAGCACTACAATGCTCCTGATAGCACATTCATG
* *
24011689 CTCCTGTTAGCACTACAATGCT-CTAGATAGCATATTTATG
1 CTCCTGTTAGCACTACAATGCTCCT-GATAGCACATTCATG
* * * *
24011729 CTCTTATTTGCATTACAATGC
1 CTCCTGTTAGCACTACAATGC
24011750 CCCGACTGCA
Statistics
Matches: 50, Mismatches: 10, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
39 2 0.04
40 48 0.96
ACGTcount: A:0.24, C:0.26, G:0.16, T:0.35
Consensus pattern (40 bp):
CTCCTGTTAGCACTACAATGCTCCTGATAGCACATTCATG
Found at i:24028446 original size:1 final size:1
Alignment explanation
Indices: 24028440--24028467 Score: 56
Period size: 1 Copynumber: 28.0 Consensus size: 1
24028430 TGAAGATAGG
24028440 TTTTTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTT
24028468 CGGCTATTTA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 27 1.00
ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00
Consensus pattern (1 bp):
T
Found at i:24028632 original size:19 final size:20
Alignment explanation
Indices: 24028608--24028653 Score: 67
Period size: 19 Copynumber: 2.4 Consensus size: 20
24028598 GTGTTCATCG
24028608 TTTATTTCTGTTCATTTT-T
1 TTTATTTCTGTTCATTTTCT
* *
24028627 TTTATTTCTTTTTATTTTCT
1 TTTATTTCTGTTCATTTTCT
24028647 TTTATTT
1 TTTATTT
24028654 TCATTTTGTT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
19 16 0.67
20 8 0.33
ACGTcount: A:0.11, C:0.09, G:0.02, T:0.78
Consensus pattern (20 bp):
TTTATTTCTGTTCATTTTCT
Found at i:24028638 original size:10 final size:9
Alignment explanation
Indices: 24028621--24028654 Score: 50
Period size: 10 Copynumber: 3.6 Consensus size: 9
24028611 ATTTCTGTTC
24028621 ATTTTTTTT
1 ATTTTTTTT
24028630 ATTTCTTTTT
1 ATTT-TTTTT
24028640 ATTTTCTTTT
1 ATTTT-TTTT
24028650 ATTTT
1 ATTTT
24028655 CATTTTGTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
9 5 0.22
10 18 0.78
ACGTcount: A:0.12, C:0.06, G:0.00, T:0.82
Consensus pattern (9 bp):
ATTTTTTTT
Found at i:24029313 original size:18 final size:19
Alignment explanation
Indices: 24029290--24029334 Score: 58
Period size: 18 Copynumber: 2.5 Consensus size: 19
24029280 ATATATATTG
24029290 TATATATTTTAAATGTT-T
1 TATATATTTTAAATGTTAT
* *
24029308 TATATATGTTATATGTTAT
1 TATATATTTTAAATGTTAT
24029327 TAT-TATTT
1 TATATATTT
24029335 ATTTGCAAAG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
18 19 0.83
19 4 0.17
ACGTcount: A:0.31, C:0.00, G:0.07, T:0.62
Consensus pattern (19 bp):
TATATATTTTAAATGTTAT
Found at i:24029544 original size:2 final size:2
Alignment explanation
Indices: 24029491--24029533 Score: 77
Period size: 2 Copynumber: 21.5 Consensus size: 2
24029481 TTTTACATTC
*
24029491 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT TT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
24029533 A
1 A
24029534 CACACATATA
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 39 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
AT
Found at i:24046644 original size:45 final size:47
Alignment explanation
Indices: 24046593--24046681 Score: 119
Period size: 45 Copynumber: 1.9 Consensus size: 47
24046583 CTCTGGTAAT
* * *
24046593 AACTCTTCGGAGTTACCTGTTA-AGCTCAG-TGAGCTTCCTATTTTA
1 AACTCTTAGGAGTTACCTGTTATAGCCCAGATAAGCTTCCTATTTTA
* *
24046638 AACTCTTATGAGTTTCCTGTTATAGCCCAGATAAGCTTCCTATT
1 AACTCTTAGGAGTTACCTGTTATAGCCCAGATAAGCTTCCTATT
24046682 ACATGGCTGA
Statistics
Matches: 37, Mismatches: 5, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
45 19 0.51
46 6 0.16
47 12 0.32
ACGTcount: A:0.24, C:0.22, G:0.16, T:0.38
Consensus pattern (47 bp):
AACTCTTAGGAGTTACCTGTTATAGCCCAGATAAGCTTCCTATTTTA
Found at i:24046778 original size:35 final size:35
Alignment explanation
Indices: 24046728--24046800 Score: 128
Period size: 35 Copynumber: 2.1 Consensus size: 35
24046718 GAGAGTGCTT
* *
24046728 CCTGATTATGTGTTGACGGATCACTGTTTTGTACA
1 CCTGAATATGAGTTGACGGATCACTGTTTTGTACA
24046763 CCTGAATATGAGTTGACGGATCACTGTTTTGTACA
1 CCTGAATATGAGTTGACGGATCACTGTTTTGTACA
24046798 CCT
1 CCT
24046801 CGTGTGTACT
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
35 36 1.00
ACGTcount: A:0.22, C:0.19, G:0.22, T:0.37
Consensus pattern (35 bp):
CCTGAATATGAGTTGACGGATCACTGTTTTGTACA
Found at i:24048274 original size:20 final size:22
Alignment explanation
Indices: 24048249--24048295 Score: 62
Period size: 22 Copynumber: 2.2 Consensus size: 22
24048239 CTTGTTAATA
24048249 TATTTTT-ATCATG-TTTGTAT
1 TATTTTTAATCATGTTTTGTAT
* *
24048269 TATTTTTAATTATGTTTTGTTT
1 TATTTTTAATCATGTTTTGTAT
24048291 TATTT
1 TATTT
24048296 ATTTTATCTT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
20 7 0.30
21 5 0.22
22 11 0.48
ACGTcount: A:0.19, C:0.02, G:0.09, T:0.70
Consensus pattern (22 bp):
TATTTTTAATCATGTTTTGTAT
Found at i:24049946 original size:58 final size:58
Alignment explanation
Indices: 24049882--24049993 Score: 154
Period size: 58 Copynumber: 1.9 Consensus size: 58
24049872 CGAAATAGTA
* *
24049882 TATTTTTTTTAATGGAGCCTATCT-GAAAGGCGCCAATGAATATTTTATATTAAAAAAT
1 TATTTTTTTTAATGGAGCCTAT-TAGAAAGGCACCAATAAATATTTTATATTAAAAAAT
* * * *
24049940 TATTTTTTTTAATGGCGCCTATTAGATAGGCACTAATAAATTTTTTATATTAAA
1 TATTTTTTTTAATGGAGCCTATTAGAAAGGCACCAATAAATATTTTATATTAAA
24049994 TTTTTTTTCT
Statistics
Matches: 47, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
57 1 0.02
58 46 0.98
ACGTcount: A:0.35, C:0.10, G:0.12, T:0.43
Consensus pattern (58 bp):
TATTTTTTTTAATGGAGCCTATTAGAAAGGCACCAATAAATATTTTATATTAAAAAAT
Found at i:24053797 original size:21 final size:21
Alignment explanation
Indices: 24053762--24053818 Score: 62
Period size: 21 Copynumber: 2.7 Consensus size: 21
24053752 ATGTCTAAAT
* *
24053762 TAAATAATCTAAATTTAAACTC
1 TAAATAA-ATAAATTTAAACCC
*
24053784 TAAATAAATAAATTAAAACCC
1 TAAATAAATAAATTTAAACCC
*
24053805 TAATTAAA-AAATTT
1 TAAATAAATAAATTT
24053819 TCAAATATAA
Statistics
Matches: 30, Mismatches: 5, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
20 5 0.17
21 18 0.60
22 7 0.23
ACGTcount: A:0.56, C:0.11, G:0.00, T:0.33
Consensus pattern (21 bp):
TAAATAAATAAATTTAAACCC
Found at i:24054880 original size:22 final size:22
Alignment explanation
Indices: 24054852--24054894 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
24054842 TATTTGGCGT
*
24054852 GACTAATGGTAGAATAGTGGTG
1 GACTAATGGCAGAATAGTGGTG
*
24054874 GACTAATGGCAGCATAGTGGT
1 GACTAATGGCAGAATAGTGGT
24054895 CATGCCATTC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.30, C:0.09, G:0.35, T:0.26
Consensus pattern (22 bp):
GACTAATGGCAGAATAGTGGTG
Found at i:24059732 original size:51 final size:51
Alignment explanation
Indices: 24059651--24059870 Score: 359
Period size: 51 Copynumber: 4.3 Consensus size: 51
24059641 CAGATCATAT
*
24059651 TTATTACTTGTCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCAC
1 TTATCACTTGTCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCAC
* **
24059702 TTATCACTTGTCACTTGTCACTGATCAGATAAATGGTAGCTTTAGCTACCAC
1 TTATCACTTGTCACTTGTCACTGATCAGATAAGT-GTAGCTAAAGCTACCAC
24059754 TTATCACTTGTCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCAC
1 TTATCACTTGTCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCAC
** * *
24059805 TTATCACTTGTCACTTGTCGTTGATCAGATAAGTGTAGCTAAAACTATCAC
1 TTATCACTTGTCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCAC
24059856 TTATCACTTGTCACT
1 TTATCACTTGTCACT
24059871 GATCAGAAGT
Statistics
Matches: 157, Mismatches: 11, Indels: 2
0.92 0.06 0.01
Matches are distributed among these distances:
51 109 0.69
52 48 0.31
ACGTcount: A:0.28, C:0.22, G:0.15, T:0.35
Consensus pattern (51 bp):
TTATCACTTGTCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCAC
Found at i:24059770 original size:103 final size:102
Alignment explanation
Indices: 24059651--24059870 Score: 359
Period size: 103 Copynumber: 2.1 Consensus size: 102
24059641 CAGATCATAT
*
24059651 TTATTACTTGTCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTGTCAC
1 TTATCACTTGTCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTGTCAC
** *
24059716 TTGTCACTGATCAGATAAATGGTAGCTTTAGCTACCAC
66 TTGTCACTGATCAGATAAAT-GTAGCTAAAACTACCAC
24059754 TTATCACTTGTCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTGTCAC
1 TTATCACTTGTCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTGTCAC
** * *
24059819 TTGTCGTTGATCAGATAAGTGTAGCTAAAACTATCAC
66 TTGTCACTGATCAGATAAATGTAGCTAAAACTACCAC
24059856 TTATCACTTGTCACT
1 TTATCACTTGTCACT
24059871 GATCAGAAGT
Statistics
Matches: 109, Mismatches: 8, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
102 28 0.26
103 81 0.74
ACGTcount: A:0.28, C:0.22, G:0.15, T:0.35
Consensus pattern (102 bp):
TTATCACTTGTCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTGTCAC
TTGTCACTGATCAGATAAATGTAGCTAAAACTACCAC
Found at i:24064947 original size:10 final size:10
Alignment explanation
Indices: 24064913--24064955 Score: 50
Period size: 10 Copynumber: 4.3 Consensus size: 10
24064903 TAAATTCCTA
24064913 AAAGATAAAT
1 AAAGATAAAT
* ** *
24064923 ACATTTAATT
1 AAAGATAAAT
24064933 AAAGATAAAT
1 AAAGATAAAT
24064943 AAAGATAAAT
1 AAAGATAAAT
24064953 AAA
1 AAA
24064956 ATCCTAAAAA
Statistics
Matches: 25, Mismatches: 8, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
10 25 1.00
ACGTcount: A:0.65, C:0.02, G:0.07, T:0.26
Consensus pattern (10 bp):
AAAGATAAAT
Found at i:24068277 original size:33 final size:33
Alignment explanation
Indices: 24068238--24068305 Score: 102
Period size: 33 Copynumber: 2.1 Consensus size: 33
24068228 GAGGACAGAG
* *
24068238 AAGCAACCTAGGACAAAG-AAATGGACAGACATT
1 AAGCAACCCAAGACAAAGAAAAT-GACAGACATT
24068271 AAGCAACCCAAGACAAAGAAAATGACAGACATT
1 AAGCAACCCAAGACAAAGAAAATGACAGACATT
24068304 AA
1 AA
24068306 TCCACCTAAA
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
33 28 0.88
34 4 0.12
ACGTcount: A:0.53, C:0.19, G:0.18, T:0.10
Consensus pattern (33 bp):
AAGCAACCCAAGACAAAGAAAATGACAGACATT
Found at i:24069331 original size:2 final size:2
Alignment explanation
Indices: 24069310--24069353 Score: 56
Period size: 2 Copynumber: 23.0 Consensus size: 2
24069300 CACAAATACG
* *
24069310 TA TA AA TA T- TA TA TA AA TA TA TA TA TA TA TA TA TA -A TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
24069350 TA TA
1 TA TA
24069354 AAAATGTGCA
Statistics
Matches: 36, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
1 2 0.06
2 34 0.94
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (2 bp):
TA
Found at i:24069503 original size:16 final size:16
Alignment explanation
Indices: 24069482--24069517 Score: 63
Period size: 16 Copynumber: 2.2 Consensus size: 16
24069472 AAATGGAAAG
*
24069482 TATATATATATACATA
1 TATATAGATATACATA
24069498 TATATAGATATACATA
1 TATATAGATATACATA
24069514 TATA
1 TATA
24069518 AAAAAGGTAT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.50, C:0.06, G:0.03, T:0.42
Consensus pattern (16 bp):
TATATAGATATACATA
Found at i:24069695 original size:3 final size:3
Alignment explanation
Indices: 24069673--24069766 Score: 134
Period size: 3 Copynumber: 30.7 Consensus size: 3
24069663 ATATAATGAG
* *
24069673 AAT AAC AAT GAT ATAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT A-AT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
**
24069719 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AATT GGT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA-T AAT AAT AAT AAT
24069765 AA
1 AA
24069767 CAACATCAAA
Statistics
Matches: 81, Mismatches: 8, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
3 77 0.95
4 4 0.05
ACGTcount: A:0.63, C:0.01, G:0.03, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:24071291 original size:14 final size:14
Alignment explanation
Indices: 24071249--24071285 Score: 51
Period size: 13 Copynumber: 2.8 Consensus size: 14
24071239 TATTCTTAAC
*
24071249 AAATATTTAA-ATT
1 AAATATTTAATAAT
24071262 AAATATTTAATAAT
1 AAATATTTAATAAT
24071276 AAA-ATTTAAT
1 AAATATTTAAT
24071286 TGATAATTTT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
13 17 0.77
14 5 0.23
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (14 bp):
AAATATTTAATAAT
Found at i:24074109 original size:45 final size:45
Alignment explanation
Indices: 24074044--24074151 Score: 137
Period size: 45 Copynumber: 2.4 Consensus size: 45
24074034 TATGTGCCGA
* *
24074044 CTACTG-TACTGTTACCGATTCGGCACTTTGTGTGTCGAAAACTG
1 CTACTGTTACTGTTACTGATTCGACACTTTGTGTGTCGAAAACTG
* * *
24074088 TTACTGTTACTGTTACTGATTCGATACTTTGTGTGTCGAATACTG
1 CTACTGTTACTGTTACTGATTCGACACTTTGTGTGTCGAAAACTG
**
24074133 CTACCATTACTGATTACTG
1 CTACTGTTACTG-TTACTG
24074152 TTTACTGGTG
Statistics
Matches: 54, Mismatches: 8, Indels: 2
0.84 0.12 0.03
Matches are distributed among these distances:
44 5 0.09
45 43 0.80
46 6 0.11
ACGTcount: A:0.21, C:0.20, G:0.19, T:0.39
Consensus pattern (45 bp):
CTACTGTTACTGTTACTGATTCGACACTTTGTGTGTCGAAAACTG
Found at i:24075480 original size:17 final size:18
Alignment explanation
Indices: 24075453--24075495 Score: 54
Period size: 17 Copynumber: 2.4 Consensus size: 18
24075443 ATATATCACG
*
24075453 TTAATAAATAATTTA-AAA
1 TTAA-AAATAAATTATAAA
24075471 TTAAAAATAAATTATAAA
1 TTAAAAATAAATTATAAA
24075489 -TAAAAAT
1 TTAAAAAT
24075496 TAAGTTAATA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
17 16 0.70
18 7 0.30
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (18 bp):
TTAAAAATAAATTATAAA
Found at i:24079775 original size:43 final size:42
Alignment explanation
Indices: 24079712--24079837 Score: 139
Period size: 43 Copynumber: 2.9 Consensus size: 42
24079702 AGGACTTCGA
24079712 TATGTGTTTTCGTGTAAGACCACGTCTGGGACGTCGGCATCGAC
1 TATGTGTTTTCGTGTAAGACCACGTCTGGGACGT-GGCATCG-C
* *
24079756 T-TGTGTTTTCGTGTAAGACC-CTGTCTAGGACAGTGGCATCGG
1 TATGTGTTTTCGTGTAAGACCAC-GTCTGGGAC-GTGGCATCGC
* * * *
24079798 TATGTGATTACATGTAAGACCATGTCTGGGACGTTGGCAT
1 TATGTGTTTTCGTGTAAGACCACGTCTGGGACG-TGGCAT
24079838 TGTACTAGCT
Statistics
Matches: 70, Mismatches: 7, Indels: 11
0.80 0.08 0.12
Matches are distributed among these distances:
42 3 0.04
43 64 0.91
44 3 0.04
ACGTcount: A:0.20, C:0.19, G:0.29, T:0.32
Consensus pattern (42 bp):
TATGTGTTTTCGTGTAAGACCACGTCTGGGACGTGGCATCGC
Found at i:24080516 original size:15 final size:15
Alignment explanation
Indices: 24080484--24080532 Score: 55
Period size: 15 Copynumber: 3.2 Consensus size: 15
24080474 TACTTTAATC
24080484 ATGGATTAGTATTT-T
1 ATGG-TTAGTATTTAT
24080499 ATGGTTAGTATTTAT
1 ATGGTTAGTATTTAT
* *
24080514 ATGGTAATGTATATAT
1 ATGGTTA-GTATTTAT
24080530 ATG
1 ATG
24080533 TGTGCATGGT
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
14 9 0.30
15 11 0.37
16 10 0.33
ACGTcount: A:0.31, C:0.00, G:0.20, T:0.49
Consensus pattern (15 bp):
ATGGTTAGTATTTAT
Found at i:24080821 original size:25 final size:25
Alignment explanation
Indices: 24080787--24080926 Score: 143
Period size: 25 Copynumber: 5.8 Consensus size: 25
24080777 TCAAATTTTG
24080787 ATGTACAAATGCAGTCCAATTATAT
1 ATGTACAAATGCAGTCCAATTATAT
*
24080812 ATGTATAAATGCAGTCCAATTATAT
1 ATGTACAAATGCAGTCCAATTATAT
* * *
24080837 ATGT--ATATGCTGTCAAATT-T-T
1 ATGTACAAATGCAGTCCAATTATAT
24080858 GATGTACAAATGCAGTCCAATTATAT
1 -ATGTACAAATGCAGTCCAATTATAT
* * *
24080884 ATGT--ATATGCTGTCAAATT-T-T
1 ATGTACAAATGCAGTCCAATTATAT
24080905 GATGTACAAATGCAGTCCAATT
1 -ATGTACAAATGCAGTCCAATT
24080927 TGTAATAGGC
Statistics
Matches: 94, Mismatches: 13, Indels: 17
0.76 0.10 0.14
Matches are distributed among these distances:
21 2 0.02
22 10 0.11
23 24 0.26
24 24 0.26
25 33 0.35
26 1 0.01
ACGTcount: A:0.36, C:0.14, G:0.14, T:0.36
Consensus pattern (25 bp):
ATGTACAAATGCAGTCCAATTATAT
Found at i:24080863 original size:47 final size:47
Alignment explanation
Indices: 24080812--24080926 Score: 221
Period size: 47 Copynumber: 2.4 Consensus size: 47
24080802 CCAATTATAT
*
24080812 ATGTATAAATGCAGTCCAATTATATATGTATATGCTGTCAAATTTTG
1 ATGTACAAATGCAGTCCAATTATATATGTATATGCTGTCAAATTTTG
24080859 ATGTACAAATGCAGTCCAATTATATATGTATATGCTGTCAAATTTTG
1 ATGTACAAATGCAGTCCAATTATATATGTATATGCTGTCAAATTTTG
24080906 ATGTACAAATGCAGTCCAATT
1 ATGTACAAATGCAGTCCAATT
24080927 TGTAATAGGC
Statistics
Matches: 67, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
47 67 1.00
ACGTcount: A:0.35, C:0.13, G:0.15, T:0.37
Consensus pattern (47 bp):
ATGTACAAATGCAGTCCAATTATATATGTATATGCTGTCAAATTTTG
Found at i:24081553 original size:88 final size:89
Alignment explanation
Indices: 24081403--24081936 Score: 716
Period size: 88 Copynumber: 6.0 Consensus size: 89
24081393 TCGGTGAAAC
24081403 CACCAGCCTTGCCTCCCTGGGTTTGCAGCGGAGCAGACTGAATATAGCAGATCTTGCCTTCCTGT
1 CACCAGCCTTGCCTCCCTGGGTTTGCAGCGGAGCAGACTGAATATAGCAGATCTTGCCTTCCTGT
24081468 ACTGACAGCGAAGCAGATCAAAGA
66 ACTGACAGCGAAGCAGATCAAAGA
* *
24081492 CACCAGCCTTGCCTCCCTGGG-TTGCAGCGGAGCAGACTGAATATAGTAGATCTTGACTTCCTGT
1 CACCAGCCTTGCCTCCCTGGGTTTGCAGCGGAGCAGACTGAATATAGCAGATCTTGCCTTCCTGT
*
24081556 ACTGACAGCGAAGCAAATCAAAGA
66 ACTGACAGCGAAGCAGATCAAAGA
24081580 CACCAGCCTTGCCTCCCTGGGTTTGCAGCGGAGCAGACTGAATATAGCAGATCTTGCCTTCCTGT
1 CACCAGCCTTGCCTCCCTGGGTTTGCAGCGGAGCAGACTGAATATAGCAGATCTTGCCTTCCTGT
*
24081645 ACTGACAACGAAGCAGATCAAAGA
66 ACTGACAGCGAAGCAGATCAAAGA
*
24081669 CACCAGCCTTGCCTCCCTGGGTTTGCAGCGGAGCAGACTGAAAATAGCAGATCTTGCCTTCCTGT
1 CACCAGCCTTGCCTCCCTGGGTTTGCAGCGGAGCAGACTGAATATAGCAGATCTTGCCTTCCTGT
* * *
24081734 ACTGACGGAGAAGCAGATCGAAG-
66 ACTGACAGCGAAGCAGATCAAAGA
* ** * * ** * *
24081757 CTACCAGCCTTGTCTCCCTGGG-CAGTAGTGGAGCAGGTTGAAGATAGCAGATCGTGCCTTCCTG
1 C-ACCAGCCTTGCCTCCCTGGGTTTGCAGCGGAGCAGACTGAATATAGCAGATCTTGCCTTCCTG
*
24081821 TACTGACAGCGAAGCAGATCGAAGA
65 TACTGACAGCGAAGCAGATCAAAGA
* * * * ** * * * ** * * * *
24081846 TACTAGCCTTGTCTCCCTTGG-CAGTAGTGGAGTAGGTTAAAGATAACAGATCTTGCCTTCTTGT
1 CACCAGCCTTGCCTCCCTGGGTTTGCAGCGGAGCAGACTGAATATAGCAGATCTTGCCTTCCTGT
* *
24081910 ACTGACAACGAAGCAGATCGAAGA
66 ACTGACAGCGAAGCAGATCAAAGA
24081934 CAC
1 CAC
24081937 TAGTCTTATC
Statistics
Matches: 409, Mismatches: 33, Indels: 7
0.91 0.07 0.02
Matches are distributed among these distances:
88 223 0.55
89 186 0.45
ACGTcount: A:0.27, C:0.26, G:0.25, T:0.22
Consensus pattern (89 bp):
CACCAGCCTTGCCTCCCTGGGTTTGCAGCGGAGCAGACTGAATATAGCAGATCTTGCCTTCCTGT
ACTGACAGCGAAGCAGATCAAAGA
Found at i:24081792 original size:177 final size:176
Alignment explanation
Indices: 24081403--24081936 Score: 714
Period size: 177 Copynumber: 3.0 Consensus size: 176
24081393 TCGGTGAAAC
24081403 CACCAGCCTTGCCTCCCTGGGTTTGCAGCGGAGCAGACTGAATATAGCAGATCTTGCCTTCCTGT
1 CACCAGCCTTGCCTCCCTGGGTTTGCAGCGGAGCAGACTGAATATAGCAGATCTTGCCTTCCTGT
24081468 ACTGACAGCGAAGCAGATCAAAGACACCAGCCTTGCCTCCCTGGGTTGCAGCGGAGCAGACTGAA
66 ACTGACAGCGAAGCAGATCAAAGACACCAGCCTTGCCTCCCTGGGTTGCAGCGGAGCAGACTGAA
* * * * * *
24081533 TATAGTAGATCTTGACTTCCTGTACTGACAGCGAAGCAAATCAAAGA
131 AATAGCAGATCTTGCCTTCCTGTACTGAC-GAGAAGCAGATCGAAGA
24081580 CACCAGCCTTGCCTCCCTGGGTTTGCAGCGGAGCAGACTGAATATAGCAGATCTTGCCTTCCTGT
1 CACCAGCCTTGCCTCCCTGGGTTTGCAGCGGAGCAGACTGAATATAGCAGATCTTGCCTTCCTGT
*
24081645 ACTGACAACGAAGCAGATCAAAGACACCAGCCTTGCCTCCCTGGGTTTGCAGCGGAGCAGACTGA
66 ACTGACAGCGAAGCAGATCAAAGACACCAGCCTTGCCTCCCTGGG-TTGCAGCGGAGCAGACTGA
24081710 AAATAGCAGATCTTGCCTTCCTGTACTGACGGAGAAGCAGATCGAAG-
130 AAATAGCAGATCTTGCCTTCCTGTACTGAC-GAGAAGCAGATCGAAGA
* ** * * ** * *
24081757 CTACCAGCCTTGTCTCCCTGGG-CAGTAGTGGAGCAGGTTGAAGATAGCAGATCGTGCCTTCCTG
1 C-ACCAGCCTTGCCTCCCTGGGTTTGCAGCGGAGCAGACTGAATATAGCAGATCTTGCCTTCCTG
* * * * * ** * * * * *
24081821 TACTGACAGCGAAGCAGATCGAAGATACTAGCCTTGTCTCCCTTGGCAGTAGTGGAGTAG-GTTA
65 TACTGACAGCGAAGCAGATCAAAGACACCAGCCTTGCCTCCCTGGGTTGCAGCGGAGCAGACTGA
* * *
24081885 AAGATAACAGATCTTGCCTTCTTGTACTGACAACGAAGCAGATCGAAGA
130 AA-ATAGCAGATCTTGCCTTCCTGTACTGACGA-GAAGCAGATCGAAGA
24081934 CAC
1 CAC
24081937 TAGTCTTATC
Statistics
Matches: 319, Mismatches: 33, Indels: 11
0.88 0.09 0.03
Matches are distributed among these distances:
175 5 0.02
176 51 0.16
177 185 0.58
178 78 0.24
ACGTcount: A:0.27, C:0.26, G:0.25, T:0.22
Consensus pattern (176 bp):
CACCAGCCTTGCCTCCCTGGGTTTGCAGCGGAGCAGACTGAATATAGCAGATCTTGCCTTCCTGT
ACTGACAGCGAAGCAGATCAAAGACACCAGCCTTGCCTCCCTGGGTTGCAGCGGAGCAGACTGAA
AATAGCAGATCTTGCCTTCCTGTACTGACGAGAAGCAGATCGAAGA
Found at i:24082322 original size:44 final size:45
Alignment explanation
Indices: 24082258--24082774 Score: 288
Period size: 44 Copynumber: 11.8 Consensus size: 45
24082248 GCCATAATTC
* *
24082258 TATCTCCCT-GGTTGGCAGTGGAATAGATTGAAGATTACAGATCT
1 TATCTCCCTAGGTTAGCAGTGGAGTAGATTGAAGATTACAGATCT
* * * ** *
24082302 TATCTCCCTAGG-CAGTAGTGGAGTAGATCGAAGATGGCAGATTT
1 TATCTCCCTAGGTTAGCAGTGGAGTAGATTGAAGATTACAGATCT
* * * *
24082346 TACCTCCCTGAGGTTA-CAGTGGAGTACATTGAAGCCAGTA-A-TTC-
1 TATCTCCCT-AGGTTAGCAGTGGAGTAGATTGAAG--ATTACAGATCT
* * * *
24082390 TATCTCACT-GGTTGGCAGTGGAATAGATTGAAGATTTCAGATCT
1 TATCTCCCTAGGTTAGCAGTGGAGTAGATTGAAGATTACAGATCT
* ** *
24082434 TATCTCCCTAAGCGTT---AGTGGAGTAGATCGAAGATGGCAGATTT
1 TATCTCCCT-AG-GTTAGCAGTGGAGTAGATTGAAGATTACAGATCT
* * * ** *
24082478 TACCTCCCTGTGGTTA-CAGTGGAGTACATTGAAGCCGTA-A-TTC-
1 TATCTCCCT-AGGTTAGCAGTGGAGTAGATTGAAG-ATTACAGATCT
* *
24082521 TATCTCCCT-GGTTGGCAGTGGAATAGATTGAAGATTACAGATCT
1 TATCTCCCTAGGTTAGCAGTGGAGTAGATTGAAGATTACAGATCT
* * * ** *
24082565 TATCTCCCTAGG-CAGCAGTGGAGTAGATTAAATATGGCAGATTT
1 TATCTCCCTAGGTTAGCAGTGGAGTAGATTGAAGATTACAGATCT
* * * *
24082609 TACCTCCCTGAGGTTA-CAGTGGAGTACATTGAAGCCAGTA-A-TTC-
1 TATCTCCCT-AGGTTAGCAGTGGAGTAGATTGAAG--ATTACAGATCT
* * * *
24082653 TATCCCCCT-GGTTGGCAGTGGAATAGATTGAAGATTTCAGATCT
1 TATCTCCCTAGGTTAGCAGTGGAGTAGATTGAAGATTACAGATCT
* * ** * * ** *
24082697 TATTTCCCTAAG-CGGTAGTGGAGCAGATTGAAGATGGCAGATTT
1 TATCTCCCTAGGTTAGCAGTGGAGTAGATTGAAGATTACAGATCT
* * *
24082741 TACCTCCCTGGGGTTA-CAGTGGAGTACATTGAAG
1 TATCTCCCT-AGGTTAGCAGTGGAGTAGATTGAAG
24082775 CCAGTAATTC
Statistics
Matches: 347, Mismatches: 95, Indels: 61
0.69 0.19 0.12
Matches are distributed among these distances:
41 10 0.03
42 27 0.08
43 49 0.14
44 176 0.51
45 75 0.22
46 5 0.01
47 5 0.01
ACGTcount: A:0.27, C:0.18, G:0.26, T:0.30
Consensus pattern (45 bp):
TATCTCCCTAGGTTAGCAGTGGAGTAGATTGAAGATTACAGATCT
Found at i:24082389 original size:132 final size:132
Alignment explanation
Indices: 24082062--24082856 Score: 1142
Period size: 132 Copynumber: 6.0 Consensus size: 132
24082052 ACAGCGAAGC
*
24082062 AGATCGAAGATGGCGGATTTTACCT-CCTCGTGGTTACAGTGGAGTACATTGAAGCCAGTAATTC
1 AGATCGAAGATGGCAGATTTTACCTCCCT-GTGGTTACAGTGGAGTACATTGAAGCCAGTAATTC
*** * ** *
24082126 TA-CTTCCCTGGGCAGCAGTGGAATAGATTGAAGATTTCAGATCTTGCCTTCCT--GCA-TAGAC
65 TATC-TCCCTGGTTGGCAGTGGAATAGATTGAAGATTACAGATCTTATCTCCCTAAGCAGTAG--
* *
24082187 AGCGAAGC
127 TG-G-AGT
24082195 AGATCGAAGATGGC-GAATTTTACCT-CCTCGTGGTTACAGTGGAGTACATTGAAGCCA-TAATT
1 AGATCGAAGATGGCAG-ATTTTACCTCCCT-GTGGTTACAGTGGAGTACATTGAAGCCAGTAATT
*
24082257 CTATCTCCCTGGTTGGCAGTGGAATAGATTGAAGATTACAGATCTTATCTCCCTAGGCAGTAGTG
64 CTATCTCCCTGGTTGGCAGTGGAATAGATTGAAGATTACAGATCTTATCTCCCTAAGCAGTAGTG
24082322 GAGT
129 GAGT
*
24082326 AGATCGAAGATGGCAGATTTTACCTCCCTGAGGTTACAGTGGAGTACATTGAAGCCAGTAATTCT
1 AGATCGAAGATGGCAGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCAGTAATTCT
* *
24082391 ATCTCACTGGTTGGCAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGC-GTTAGTGG
66 ATCTCCCTGGTTGGCAGTGGAATAGATTGAAGATTACAGATCTTATCTCCCTAAGCAG-TAGTGG
24082455 AGT
130 AGT
24082458 AGATCGAAGATGGCAGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCC-GTAATTCT
1 AGATCGAAGATGGCAGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCAGTAATTCT
* *
24082522 ATCTCCCTGGTTGGCAGTGGAATAGATTGAAGATTACAGATCTTATCTCCCTAGGCAGCAGTGGA
66 ATCTCCCTGGTTGGCAGTGGAATAGATTGAAGATTACAGATCTTATCTCCCTAAGCAGTAGTGGA
24082587 GT
131 GT
** * *
24082589 AGATTAAATATGGCAGATTTTACCTCCCTGAGGTTACAGTGGAGTACATTGAAGCCAGTAATTCT
1 AGATCGAAGATGGCAGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCAGTAATTCT
* * * *
24082654 ATCCCCCTGGTTGGCAGTGGAATAGATTGAAGATTTCAGATCTTATTTCCCTAAGCGGTAGTGGA
66 ATCTCCCTGGTTGGCAGTGGAATAGATTGAAGATTACAGATCTTATCTCCCTAAGCAGTAGTGGA
*
24082719 GC
131 GT
* *
24082721 AGATTGAAGATGGCAGATTTTACCTCCCTGGGGTTACAGTGGAGTACATTGAAGCCAGTAATTCT
1 AGATCGAAGATGGCAGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCAGTAATTCT
* * * * *
24082786 ATCTCCCTGGTCGACAGTGGAATCGATCGAAGAATAGCAGATCTTATCTCCCTAAGCAGTAGTGG
66 ATCTCCCTGGTTGGCAGTGGAATAGATTGAAGATTA-CAGATCTTATCTCCCTAAGCAGTAGTGG
24082851 AGT
130 AGT
24082854 AGA
1 AGA
24082857 CTGATGACGG
Statistics
Matches: 608, Mismatches: 42, Indels: 24
0.90 0.06 0.04
Matches are distributed among these distances:
131 174 0.29
132 340 0.56
133 88 0.14
134 3 0.00
135 3 0.00
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.29
Consensus pattern (132 bp):
AGATCGAAGATGGCAGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCAGTAATTCT
ATCTCCCTGGTTGGCAGTGGAATAGATTGAAGATTACAGATCTTATCTCCCTAAGCAGTAGTGGA
GT
Found at i:24082554 original size:263 final size:263
Alignment explanation
Indices: 24082062--24082856 Score: 1202
Period size: 263 Copynumber: 3.0 Consensus size: 263
24082052 ACAGCGAAGC
* *
24082062 AGATCGAAGATGGCGGATTTTACCT-CCTCGTGGTTACAGTGGAGTACATTGAAGCCAGTAATTC
1 AGATCGAAGATGGCAGATTTTACCTCCCT-GAGGTTACAGTGGAGTACATTGAAGCCAGTAATTC
*** ** * * ** * *
24082126 TA-CTTCCCTGGGCAGCAGTGGAATAGATTGAAGATTTCAGATCTTGCCTTCCTGCATAGACAGC
65 TATC-TCCCTGGTTGGCAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCT-AAGCGATAGT
* *
24082190 GAAGCAGATCGAAGATGGC-GAATTTTACCT-CCTCGTGGTTACAGTGGAGTACATTGAAGCCAT
128 GGAGCAGATCGAAGATGGCAG-ATTTTACCTCCCT-GTGGTTACAGTGGAGTACATTGAAGCCGT
24082253 AATTCTATCTCCCTGGTTGGCAGTGGAATAGATTGAAGATTACAGATCTTATCTCCCTAGGCAGT
191 AATTCTATCTCCCTGGTTGGCAGTGGAATAGATTGAAGATTACAGATCTTATCTCCCTAGGCAGT
24082318 AGTGGAGT
256 AGTGGAGT
24082326 AGATCGAAGATGGCAGATTTTACCTCCCTGAGGTTACAGTGGAGTACATTGAAGCCAGTAATTCT
1 AGATCGAAGATGGCAGATTTTACCTCCCTGAGGTTACAGTGGAGTACATTGAAGCCAGTAATTCT
* *
24082391 ATCTCACTGGTTGGCAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCGTTAGTGGA
66 ATCTCCCTGGTTGGCAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCGATAGTGGA
*
24082456 GTAGATCGAAGATGGCAGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCGTAATTC
131 GCAGATCGAAGATGGCAGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCGTAATTC
*
24082521 TATCTCCCTGGTTGGCAGTGGAATAGATTGAAGATTACAGATCTTATCTCCCTAGGCAGCAGTGG
196 TATCTCCCTGGTTGGCAGTGGAATAGATTGAAGATTACAGATCTTATCTCCCTAGGCAGTAGTGG
24082586 AGT
261 AGT
** *
24082589 AGATTAAATATGGCAGATTTTACCTCCCTGAGGTTACAGTGGAGTACATTGAAGCCAGTAATTCT
1 AGATCGAAGATGGCAGATTTTACCTCCCTGAGGTTACAGTGGAGTACATTGAAGCCAGTAATTCT
* * *
24082654 ATCCCCCTGGTTGGCAGTGGAATAGATTGAAGATTTCAGATCTTATTTCCCTAAGCGGTAGTGGA
66 ATCTCCCTGGTTGGCAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCGATAGTGGA
* *
24082719 GCAGATTGAAGATGGCAGATTTTACCTCCCTGGGGTTACAGTGGAGTACATTGAAGCCAGTAATT
131 GCAGATCGAAGATGGCAGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCC-GTAATT
* * * * * *
24082784 CTATCTCCCTGGTCGACAGTGGAATCGATCGAAGAATAGCAGATCTTATCTCCCTAAGCAGTAGT
195 CTATCTCCCTGGTTGGCAGTGGAATAGATTGAAGATTA-CAGATCTTATCTCCCTAGGCAGTAGT
24082849 GGAGT
259 GGAGT
24082854 AGA
1 AGA
24082857 CTGATGACGG
Statistics
Matches: 489, Mismatches: 36, Indels: 11
0.91 0.07 0.02
Matches are distributed among these distances:
263 308 0.63
264 145 0.30
265 36 0.07
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.29
Consensus pattern (263 bp):
AGATCGAAGATGGCAGATTTTACCTCCCTGAGGTTACAGTGGAGTACATTGAAGCCAGTAATTCT
ATCTCCCTGGTTGGCAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCGATAGTGGA
GCAGATCGAAGATGGCAGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCGTAATTC
TATCTCCCTGGTTGGCAGTGGAATAGATTGAAGATTACAGATCTTATCTCCCTAGGCAGTAGTGG
AGT
Found at i:24082806 original size:395 final size:394
Alignment explanation
Indices: 24082008--24082856 Score: 1176
Period size: 395 Copynumber: 2.1 Consensus size: 394
24081998 TCCTGGGCAG
** * * * *
24082008 CAGTGGAATAGATTGAAGATTTCAGATCTTGCCTTCCTGCATAGAC--AGCGAAGCAGATCGAAG
1 CAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCT--A-AG-CGTAGTGGAGTAGATCGAAG
*
24082071 ATGGCGGATTTTACCTCCTCGTGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTACTTCCCTG
62 ATGGCAGATTTTACCTCCTCGTGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTACTTCCCTG
* * * *
24082136 GGCAGCAGTGGAATAGATTGAAGATTTCAGATCTTGCCTTCCTGCATAGACAGCGAAGCAGATCG
127 GGCAGCAGTGGAATAGATTGAAGATTACAGATCTTACCTCCCTGCA-AGACAGCGAAGCAGATCA
* *
24082201 AAGATGGCGAATTTTACCTCCTCGTGGTTACAGTGGAGTACATTGAAGCCATAATTCTATCTCCC
191 AAGATGGCGAATTTTACCTCCTCGAGGTTACAGTGGAGTACATTGAAGCCATAATTCTATCCCCC
* *
24082266 TGGTTGGCAGTGGAATAGATTGAAGATTACAGATCTTATCTCCCTAGGCAGTAGTGGAGTAGATC
256 TGGTTGGCAGTGGAATAGATTGAAGATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATC
24082331 GAAGATGGCAGATTTTACCTCCCTGAGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTATCTC
321 GAAGATGGCAGATTTTACCTCCCTGAGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTATCTC
* *
24082396 ACTGGTTGG
386 ACTGGTCGA
24082405 CAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCGTTAGTGGAGTAGATCGAAGATG
1 CAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCG-TAGTGGAGTAGATCGAAGATG
24082470 GCAGATTTTACCTCC-CTGTGGTTACAGTGGAGTACATTGAAGCC-GTAATTCTA-TCTCCCTGG
65 GCAGATTTTACCTCCTC-GTGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTACT-TCCCTGG
*** * * * * *
24082532 TTGGCAGTGGAATAGATTGAAGATTACAGATCTTATCTCCCTAGGC-AG-CAGTGGAGTAGATTA
128 GCAGCAGTGGAATAGATTGAAGATTACAGATCTTACCTCCCT--GCAAGACAGCGAAGCAGATCA
*
24082595 AATATGGC-AGATTTTACCTCC-CTGAGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTATCC
191 AAGATGGCGA-ATTTTACCTCCTC-GAGGTTACAGTGGAGTACATTGAAGCCA-TAATTCTATCC
* * *
24082658 CCCTGGTTGGCAGTGGAATAGATTGAAGATTTCAGATCTTATTTCCCTAAGCGGTAGTGGAGCAG
253 CCCTGGTTGGCAGTGGAATAGATTGAAGATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAG
* *
24082723 ATTGAAGATGGCAGATTTTACCTCCCTGGGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTAT
318 ATCGAAGATGGCAGATTTTACCTCCCTGAGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTAT
*
24082788 CTCCCTGGTCGA
383 CTCACTGGTCGA
* * **
24082800 CAGTGGAATCGATCGAAGAATAGCAGATCTTATCTCCCTAAGCAGTAGTGGAGTAGA
1 CAGTGGAATAGATTGAAG-ATTTCAGATCTTATCTCCCTAAGC-GTAGTGGAGTAGA
24082857 CTGATGACGG
Statistics
Matches: 404, Mismatches: 36, Indels: 25
0.87 0.08 0.05
Matches are distributed among these distances:
393 3 0.01
394 58 0.14
395 213 0.53
396 92 0.23
397 38 0.09
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.29
Consensus pattern (394 bp):
CAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCGTAGTGGAGTAGATCGAAGATGG
CAGATTTTACCTCCTCGTGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTACTTCCCTGGGCA
GCAGTGGAATAGATTGAAGATTACAGATCTTACCTCCCTGCAAGACAGCGAAGCAGATCAAAGAT
GGCGAATTTTACCTCCTCGAGGTTACAGTGGAGTACATTGAAGCCATAATTCTATCCCCCTGGTT
GGCAGTGGAATAGATTGAAGATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGA
TGGCAGATTTTACCTCCCTGAGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTATCTCACTGG
TCGA
Found at i:24084369 original size:21 final size:20
Alignment explanation
Indices: 24084316--24084367 Score: 54
Period size: 22 Copynumber: 2.6 Consensus size: 20
24084306 GTTTATTTAC
*
24084316 ATTATTATTACTGTATGGTT
1 ATTATTATTATTGTATGGTT
*
24084336 ATTAGTTTATTATTGTGT-GTT
1 ATTA--TTATTATTGTATGGTT
24084357 A-TATTATTATT
1 ATTATTATTATT
24084368 ATATTTATTT
Statistics
Matches: 28, Mismatches: 2, Indels: 6
0.78 0.06 0.17
Matches are distributed among these distances:
18 8 0.29
20 6 0.21
21 4 0.14
22 10 0.36
ACGTcount: A:0.25, C:0.02, G:0.13, T:0.60
Consensus pattern (20 bp):
ATTATTATTATTGTATGGTT
Found at i:24092236 original size:71 final size:71
Alignment explanation
Indices: 24092150--24092290 Score: 167
Period size: 71 Copynumber: 2.0 Consensus size: 71
24092140 CCGATCAGAT
* **
24092150 GTTTCATTACCACATATCTA-TAAACTATCAAGCATGCTAGAGAATCTGAAAAATTCAAAGTTAC
1 GTTTCATAACCACATATCTACT-AACTATCAAGCAAACTAGAGAATCTGAAAAATTCAAAGTTAC
24092214 CATAAAC
65 CATAAAC
* * * * * * **
24092221 GTTTCATAACTACATATGTACTGACTATGAAGCAAACTAGAGTATCTGAAGAATTTGAAGTTACC
1 GTTTCATAACCACATATCTACTAACTATCAAGCAAACTAGAGAATCTGAAAAATTCAAAGTTACC
24092286 ATAAA
66 ATAAA
24092291 TGCAAAACAA
Statistics
Matches: 58, Mismatches: 11, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
71 57 0.98
72 1 0.02
ACGTcount: A:0.41, C:0.17, G:0.13, T:0.29
Consensus pattern (71 bp):
GTTTCATAACCACATATCTACTAACTATCAAGCAAACTAGAGAATCTGAAAAATTCAAAGTTACC
ATAAAC
Found at i:24097466 original size:15 final size:15
Alignment explanation
Indices: 24097418--24097470 Score: 56
Period size: 15 Copynumber: 3.5 Consensus size: 15
24097408 CAATCAACTC
*
24097418 ATCATCATAATCAAT
1 ATCATCATAGTCAAT
*
24097433 ATCAT-AAAG-CAACT
1 ATCATCATAGTCAA-T
24097447 CATCATCATAGTCAAT
1 -ATCATCATAGTCAAT
24097463 ATCATCAT
1 ATCATCAT
24097471 CCTCGATGAT
Statistics
Matches: 31, Mismatches: 3, Indels: 8
0.74 0.07 0.19
Matches are distributed among these distances:
13 3 0.10
14 3 0.10
15 18 0.58
16 4 0.13
17 3 0.10
ACGTcount: A:0.43, C:0.23, G:0.04, T:0.30
Consensus pattern (15 bp):
ATCATCATAGTCAAT
Found at i:24102800 original size:9 final size:8
Alignment explanation
Indices: 24102783--24102815 Score: 50
Period size: 8 Copynumber: 4.1 Consensus size: 8
24102773 AGTAAAAGAG
24102783 AAAAATAA
1 AAAAATAA
24102791 AAAAAGTAA
1 AAAAA-TAA
24102800 AAAAAT-A
1 AAAAATAA
24102807 AAAAATAA
1 AAAAATAA
24102815 A
1 A
24102816 CCAAAGTATA
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
7 7 0.30
8 8 0.35
9 8 0.35
ACGTcount: A:0.85, C:0.00, G:0.03, T:0.12
Consensus pattern (8 bp):
AAAAATAA
Found at i:24106394 original size:17 final size:18
Alignment explanation
Indices: 24106357--24106394 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 18
24106347 CTGCTATTTT
*
24106357 AAATGAAAACAAAATGAA
1 AAATGAAAACAAAATAAA
*
24106375 AAAT-AAAAGAAAATAAA
1 AAATGAAAACAAAATAAA
24106392 AAA
1 AAA
24106395 AATAAAACAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
17 14 0.78
18 4 0.22
ACGTcount: A:0.79, C:0.03, G:0.08, T:0.11
Consensus pattern (18 bp):
AAATGAAAACAAAATAAA
Found at i:24107570 original size:21 final size:21
Alignment explanation
Indices: 24107528--24107570 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 21
24107518 CGAAATGTCC
* *
24107528 TGTAATAATAAAATTCTCTCA
1 TGTAATAACAAAATTCCCTCA
24107549 TGTAATAACAAAA-TCCCGTCA
1 TGTAATAACAAAATTCCC-TCA
24107570 T
1 T
24107571 TGTATAAAAG
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
20 3 0.16
21 16 0.84
ACGTcount: A:0.42, C:0.19, G:0.07, T:0.33
Consensus pattern (21 bp):
TGTAATAACAAAATTCCCTCA
Found at i:24108332 original size:57 final size:57
Alignment explanation
Indices: 24108271--24108381 Score: 213
Period size: 57 Copynumber: 1.9 Consensus size: 57
24108261 TAAACTTAAT
24108271 GTACCATTATATTAAATTATTTAAATATCGTATAATTTAACTAATTTTAACTTTCAC
1 GTACCATTATATTAAATTATTTAAATATCGTATAATTTAACTAATTTTAACTTTCAC
*
24108328 GTACCATTATATTAAATTATTTAAATATTGTATAATTTAACTAATTTTAACTTT
1 GTACCATTATATTAAATTATTTAAATATCGTATAATTTAACTAATTTTAACTTT
24108382 TAACTTCGTG
Statistics
Matches: 53, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
57 53 1.00
ACGTcount: A:0.39, C:0.10, G:0.04, T:0.48
Consensus pattern (57 bp):
GTACCATTATATTAAATTATTTAAATATCGTATAATTTAACTAATTTTAACTTTCAC
Found at i:24111253 original size:30 final size:30
Alignment explanation
Indices: 24111214--24111279 Score: 105
Period size: 30 Copynumber: 2.2 Consensus size: 30
24111204 CATCAATAAT
* *
24111214 TCATTAATCAACTCATCATCATAACCAATA
1 TCATCAATCAACTCATAATCATAACCAATA
*
24111244 TCATCAATCAACTCATAATCATAATCAATA
1 TCATCAATCAACTCATAATCATAACCAATA
24111274 TCATCA
1 TCATCA
24111280 TCCTCGATAA
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
30 33 1.00
ACGTcount: A:0.44, C:0.26, G:0.00, T:0.30
Consensus pattern (30 bp):
TCATCAATCAACTCATAATCATAACCAATA
Found at i:24111279 original size:15 final size:17
Alignment explanation
Indices: 24111218--24111280 Score: 66
Period size: 15 Copynumber: 4.1 Consensus size: 17
24111208 AATAATTCAT
24111218 TAATCAACTCATCATCA
1 TAATCAACTCATCATCA
*
24111235 TAACCAA-T-ATCATC-
1 TAATCAACTCATCATCA
*
24111249 -AATCAACTCATAATCA
1 TAATCAACTCATCATCA
24111265 TAATCAA-T-ATCATCA
1 TAATCAACTCATCATCA
24111280 T
1 T
24111281 CCTCGATAAT
Statistics
Matches: 38, Mismatches: 4, Indels: 10
0.73 0.08 0.19
Matches are distributed among these distances:
13 5 0.13
14 1 0.03
15 18 0.47
16 2 0.05
17 12 0.32
ACGTcount: A:0.44, C:0.25, G:0.00, T:0.30
Consensus pattern (17 bp):
TAATCAACTCATCATCA
Found at i:24114512 original size:16 final size:16
Alignment explanation
Indices: 24114493--24114531 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
24114483 GCTGAGTTCT
* *
24114493 TTTCTTTTGTTTTTTC
1 TTTCTTTCGTTTTTGC
*
24114509 TTTCATTCGTTTTTGC
1 TTTCTTTCGTTTTTGC
24114525 TTTCTTT
1 TTTCTTT
24114532 GCTACTGCCA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.03, C:0.15, G:0.08, T:0.74
Consensus pattern (16 bp):
TTTCTTTCGTTTTTGC
Found at i:24119005 original size:16 final size:17
Alignment explanation
Indices: 24118986--24119025 Score: 55
Period size: 16 Copynumber: 2.4 Consensus size: 17
24118976 GCTGAGTTCT
*
24118986 TTTCTTTTGTTTTTT-C
1 TTTCTTTCGTTTTTTGC
*
24119002 TTTCATTCGTTTTTTGC
1 TTTCTTTCGTTTTTTGC
24119019 TTTCTTT
1 TTTCTTT
24119026 GCTACTGCCA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
16 13 0.65
17 7 0.35
ACGTcount: A:0.03, C:0.15, G:0.07, T:0.75
Consensus pattern (17 bp):
TTTCTTTCGTTTTTTGC
Found at i:24128755 original size:28 final size:27
Alignment explanation
Indices: 24128707--24128759 Score: 65
Period size: 28 Copynumber: 1.9 Consensus size: 27
24128697 TATTTATATA
24128707 ATATAAATATAAATAATTATTATTTAAC
1 ATATAAATATAAATAATTATT-TTTAAC
24128735 ATATATAAT-TAATATAA-TATTTTTA
1 ATATA-AATATAA-ATAATTATTTTTA
24128760 TGATATAATA
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
27 4 0.17
28 12 0.52
29 7 0.30
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47
Consensus pattern (27 bp):
ATATAAATATAAATAATTATTTTTAAC
Found at i:24129358 original size:65 final size:65
Alignment explanation
Indices: 24129252--24129457 Score: 313
Period size: 65 Copynumber: 3.2 Consensus size: 65
24129242 TAAAACCATA
* * * *
24129252 AATATATATAATCTTAAGTTGGTGTCGAGTTAACTTTTGAAACTAACTTAATCAACAACATTATT
1 AATATATACAATCTTGAGTTGGTGTCGAGTTAACTTATGAAACCAACTTAATCAACAACATTATT
* * ***
24129317 AATATATACAATCTTGAGTTGGTGTTGAGTTAACTTGTGAAACCAACTTAATCAGTTACATTATT
1 AATATATACAATCTTGAGTTGGTGTCGAGTTAACTTATGAAACCAACTTAATCAACAACATTATT
*
24129382 AATATATACAATTTTGAGTTGGTGTCGAGTTAACTTATGAAACCAACTTAATCAACAACATTATT
1 AATATATACAATCTTGAGTTGGTGTCGAGTTAACTTATGAAACCAACTTAATCAACAACATTATT
*
24129447 AATACATACAA
1 AATATATACAA
24129458 CTGATGAAGG
Statistics
Matches: 126, Mismatches: 15, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
65 126 1.00
ACGTcount: A:0.38, C:0.13, G:0.12, T:0.36
Consensus pattern (65 bp):
AATATATACAATCTTGAGTTGGTGTCGAGTTAACTTATGAAACCAACTTAATCAACAACATTATT
Found at i:24129947 original size:6 final size:6
Alignment explanation
Indices: 24129936--24129979 Score: 63
Period size: 6 Copynumber: 7.2 Consensus size: 6
24129926 AAAGATTGTG
24129936 ATAATT ATAATT ATAATT ATAATT -TAATGT ATAATT ATCAATT A
1 ATAATT ATAATT ATAATT ATAATT ATAAT-T ATAATT AT-AATT A
24129980 AAAATTTTGG
Statistics
Matches: 35, Mismatches: 0, Indels: 5
0.88 0.00 0.12
Matches are distributed among these distances:
5 4 0.11
6 22 0.63
7 9 0.26
ACGTcount: A:0.48, C:0.02, G:0.02, T:0.48
Consensus pattern (6 bp):
ATAATT
Found at i:24130230 original size:21 final size:23
Alignment explanation
Indices: 24130206--24130260 Score: 62
Period size: 23 Copynumber: 2.4 Consensus size: 23
24130196 TTTATGAACT
24130206 TTTTATATTTTT-TAATTTT-AA
1 TTTTATATTTTTATAATTTTGAA
*
24130227 TTTTGATTTTTTTATAATTTTGAA
1 TTTT-ATATTTTTATAATTTTGAA
24130251 TTATT-TATTT
1 TT-TTATATTT
24130261 ACGTGACATA
Statistics
Matches: 28, Mismatches: 2, Indels: 6
0.78 0.06 0.17
Matches are distributed among these distances:
21 4 0.14
22 7 0.25
23 11 0.39
24 4 0.14
25 2 0.07
ACGTcount: A:0.25, C:0.00, G:0.04, T:0.71
Consensus pattern (23 bp):
TTTTATATTTTTATAATTTTGAA
Found at i:24130257 original size:17 final size:17
Alignment explanation
Indices: 24130220--24130258 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 17
24130210 ATATTTTTTA
*
24130220 ATTT-TAATTTTGATTT
1 ATTTATAATTTTGAATT
*
24130236 TTTTATAATTTTGAATT
1 ATTTATAATTTTGAATT
24130253 ATTTAT
1 ATTTAT
24130259 TTACGTGACA
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
16 3 0.16
17 16 0.84
ACGTcount: A:0.28, C:0.00, G:0.05, T:0.67
Consensus pattern (17 bp):
ATTTATAATTTTGAATT
Found at i:24136941 original size:20 final size:20
Alignment explanation
Indices: 24136916--24136958 Score: 77
Period size: 20 Copynumber: 2.1 Consensus size: 20
24136906 AATTCTAAAA
*
24136916 TCTGAAAAGTAAGGCCAAAT
1 TCTGAAAAGTAAGACCAAAT
24136936 TCTGAAAAGTAAGACCAAAT
1 TCTGAAAAGTAAGACCAAAT
24136956 TCT
1 TCT
24136959 AAATTTGTGA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.44, C:0.16, G:0.16, T:0.23
Consensus pattern (20 bp):
TCTGAAAAGTAAGACCAAAT
Found at i:24142102 original size:31 final size:31
Alignment explanation
Indices: 24142064--24142136 Score: 110
Period size: 31 Copynumber: 2.4 Consensus size: 31
24142054 AAAGTTTTCA
*
24142064 TTAAGTCACTAAATTATTCGAAAGCTTTACT
1 TTAAGTCACTAAACTATTCGAAAGCTTTACT
* * *
24142095 TTAAGTCATTAAACTATTCGAAAGTTTTTCT
1 TTAAGTCACTAAACTATTCGAAAGCTTTACT
24142126 TTAAGTCACTA
1 TTAAGTCACTA
24142137 GACGATTAAG
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 37 1.00
ACGTcount: A:0.34, C:0.15, G:0.10, T:0.41
Consensus pattern (31 bp):
TTAAGTCACTAAACTATTCGAAAGCTTTACT
Found at i:24142246 original size:65 final size:65
Alignment explanation
Indices: 24142170--24142300 Score: 199
Period size: 65 Copynumber: 2.0 Consensus size: 65
24142160 TCGACTAACG
* * * *
24142170 AGCTCCAAGCGACTATTCAACAATCGGTATAGTAGACTAGTATTCATCGATAAGTAGAAAAACAT
1 AGCTCCAAGCGACTATTCAACAATCAGTACACTAGACTAGTATTCATCAATAAGTAGAAAAACAT
* * *
24142235 AGCTCCAAGCGACTATTCAACAATTAGTACACTAGATTAGTATTCATCAATAAGTAGAATAACAT
1 AGCTCCAAGCGACTATTCAACAATCAGTACACTAGACTAGTATTCATCAATAAGTAGAAAAACAT
24142300 A
1 A
24142301 CCTTAGATCC
Statistics
Matches: 59, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
65 59 1.00
ACGTcount: A:0.41, C:0.18, G:0.15, T:0.26
Consensus pattern (65 bp):
AGCTCCAAGCGACTATTCAACAATCAGTACACTAGACTAGTATTCATCAATAAGTAGAAAAACAT
Found at i:24142862 original size:83 final size:83
Alignment explanation
Indices: 24142768--24142998 Score: 196
Period size: 76 Copynumber: 2.9 Consensus size: 83
24142758 CTTCTTTTAT
24142768 TAAAATTTTAAATTTAAACAACTTGATATATTTTTTAATCTTTATATAATATTATATTTAATTTT
1 TAAAATTTTAAATTTAAACAACTTGATATATTTTTTAATCTTTATATAATATTATATTTAATTTT
24142833 ATATGATTAACCAAAAAC
66 ATATGATTAACCAAAAAC
** ** * * *
24142851 TACTATTTTAAA-TT---CTTCTATG-T-TATCTTTTAA----AATATAAT-TTTTAATTTAATA
1 TAAAATTTTAAATTTAAACAACT-TGATATATTTTTTAATCTTTATATAATATTAT-ATTT-A-A
* * *** **** *
24142905 TTTTAGATGGTTCTTCTTTTAT
62 TTTTATATGATTAACCAAAAAC
24142927 TAAAATTTTAAATTTAAACAACTTGATATATTTTTTAATCTTTATATAATATTATATTTAATTTT
1 TAAAATTTTAAATTTAAACAACTTGATATATTTTTTAATCTTTATATAATATTATATTTAATTTT
24142992 ATATGAT
66 ATATGAT
24142999 ATAAATTATA
Statistics
Matches: 107, Mismatches: 26, Indels: 30
0.66 0.16 0.18
Matches are distributed among these distances:
73 3 0.03
74 11 0.10
75 1 0.01
76 23 0.21
77 2 0.02
78 9 0.08
79 6 0.06
80 6 0.06
81 9 0.08
82 2 0.02
83 20 0.19
84 1 0.01
85 11 0.10
86 3 0.03
ACGTcount: A:0.38, C:0.06, G:0.03, T:0.52
Consensus pattern (83 bp):
TAAAATTTTAAATTTAAACAACTTGATATATTTTTTAATCTTTATATAATATTATATTTAATTTT
ATATGATTAACCAAAAAC
Found at i:24142882 original size:159 final size:156
Alignment explanation
Indices: 24142679--24142998 Score: 604
Period size: 159 Copynumber: 2.0 Consensus size: 156
24142669 ATATTTGTAA
*
24142679 ATGATTAACCAAAACTCGTTTTAAATTCTTCTATGTTATCTTTTAAAATATAATTTTTAATTTAA
1 ATGATTAACCAAAACTCATTTTAAATTCTTCTATGTTATCTTTTAAAATATAATTTTTAATTTAA
24142744 TATTTTAGATGGTTCTTCTTTTATTAAAATTTTAAATTTAAACAACTTGATATATTTTTTAATCT
66 TATTTTAGATGGTTCTTCTTTTATTAAAATTTTAAATTTAAACAACTTGATATATTTTTTAATCT
24142809 TTATATAATATTATATTTAATTTTAT
131 TTATATAATATTATATTTAATTTTAT
24142835 ATGATTAACCAAAAACTACTATTTTAAATTCTTCTATGTTATCTTTTAAAATATAATTTTTAATT
1 ATGATTAACC-AAAACT-C-ATTTTAAATTCTTCTATGTTATCTTTTAAAATATAATTTTTAATT
24142900 TAATATTTTAGATGGTTCTTCTTTTATTAAAATTTTAAATTTAAACAACTTGATATATTTTTTAA
63 TAATATTTTAGATGGTTCTTCTTTTATTAAAATTTTAAATTTAAACAACTTGATATATTTTTTAA
24142965 TCTTTATATAATATTATATTTAATTTTAT
128 TCTTTATATAATATTATATTTAATTTTAT
24142994 ATGAT
1 ATGAT
24142999 ATAAATTATA
Statistics
Matches: 160, Mismatches: 1, Indels: 3
0.98 0.01 0.02
Matches are distributed among these distances:
156 10 0.06
157 6 0.04
158 1 0.01
159 143 0.89
ACGTcount: A:0.36, C:0.07, G:0.04, T:0.52
Consensus pattern (156 bp):
ATGATTAACCAAAACTCATTTTAAATTCTTCTATGTTATCTTTTAAAATATAATTTTTAATTTAA
TATTTTAGATGGTTCTTCTTTTATTAAAATTTTAAATTTAAACAACTTGATATATTTTTTAATCT
TTATATAATATTATATTTAATTTTAT
Found at i:24142938 original size:76 final size:76
Alignment explanation
Indices: 24142697--24142940 Score: 208
Period size: 76 Copynumber: 3.1 Consensus size: 76
24142687 CCAAAACTCG
24142697 TTTTAAATTCTTCTATGTTATCTTTTAAAATATAATTTTTAATTTAATATTTTAGATGGTTCTTC
1 TTTTAAATTCTTCTATGTTATCTTTTAAAATATAATTTTTAATTTAATATTTTAGATGGTTCTTC
24142762 TTTTATTAAAA
66 TTTTATTAAAA
* * * * *
24142773 TTTTAAATT-TAAACAACTTGATATATTTTTTAATCTTTATATAA-TATTATATTT-A-ATTTTA
1 TTTTAAATTCT--TCTA--TG-T-TATCTTTTAA----AATATAATTTTTA-ATTTAATATTTTA
* * *** **** * **
24142834 TATGATTAACCAAAAACTACTA
55 GATGGTTCTTCTTTTATTAAAA
24142856 TTTTAAATTCTTCTATGTTATCTTTTAAAATATAATTTTTAATTTAATATTTTAGATGGTTCTTC
1 TTTTAAATTCTTCTATGTTATCTTTTAAAATATAATTTTTAATTTAATATTTTAGATGGTTCTTC
24142921 TTTTATTAAAA
66 TTTTATTAAAA
24142932 TTTTAAATT
1 TTTTAAATT
24142941 TAAACAACTT
Statistics
Matches: 119, Mismatches: 34, Indels: 30
0.65 0.19 0.16
Matches are distributed among these distances:
74 10 0.08
75 6 0.05
76 34 0.29
77 2 0.02
78 9 0.08
79 3 0.03
80 3 0.03
81 9 0.08
82 2 0.02
83 25 0.21
84 6 0.05
85 10 0.08
ACGTcount: A:0.35, C:0.07, G:0.04, T:0.54
Consensus pattern (76 bp):
TTTTAAATTCTTCTATGTTATCTTTTAAAATATAATTTTTAATTTAATATTTTAGATGGTTCTTC
TTTTATTAAAA
Found at i:24151875 original size:176 final size:178
Alignment explanation
Indices: 24151674--24152075 Score: 675
Period size: 176 Copynumber: 2.3 Consensus size: 178
24151664 GGCAGAAAAA
24151674 GTAACGTTGTAACAGAGATTTCCTCAACCAAATATCATCAAACATTCTTCCCTTAGTGAGCTTAT
1 GTAACGTTGTAACAGAGATTTCCTCAACCAAATATCATCAAACATTCTTCCCTTAGTGAGCTTAT
*
24151739 CCATTCCTGTCATCTCAAAAACCATCCCAAGTCACCCAAAATAACTTAAAATTTAAGCAAAACAA
66 CCATTCCTGTCATCTCAAAAACCATCCCAAGTCACCCAAAATAACTTAAAATTTAAACAAAACAA
*
24151804 GTTCGTGGGACAAAAGGATAAAAAAAGCTCAATGGTTATGG-A-CAAT
131 GTTCGTGGGACAAAAGGATAAAAAAAACTCAATGGTTATGGAATCAAT
24151850 GTAACGTTGTAACAGAGATTTCCTCAACCAAATATCATCAAACATTCTTCCCTTAGTGAGCTTAT
1 GTAACGTTGTAACAGAGATTTCCTCAACCAAATATCATCAAACATTCTTCCCTTAGTGAGCTTAT
24151915 CCATTCCTGTCATCTCAAAAACCATCCCAAGTCACCCAAAATAACTTAAAATTTAAACAAAACAA
66 CCATTCCTGTCATCTCAAAAACCATCCCAAGTCACCCAAAATAACTTAAAATTTAAACAAAACAA
* *
24151980 GTTCGTGGGACAAAAGGATAAAAAAAACTCGATGGTTATGGAATTCATT
131 GTTCGTGGGACAAAAGGATAAAAAAAACTCAATGGTTATGGAA-TCAAT
** * * * *
24152029 GTAAC-TTCGTATTACATATTTCCCCAACCCAATATCATCAAACATTC
1 GTAACGTT-GTAACAGAGATTTCCTCAACCAAATATCATCAAACATTC
24152076 AAACTCTTCT
Statistics
Matches: 212, Mismatches: 10, Indels: 5
0.93 0.04 0.02
Matches are distributed among these distances:
176 168 0.79
177 1 0.00
178 2 0.01
179 41 0.19
ACGTcount: A:0.39, C:0.23, G:0.12, T:0.27
Consensus pattern (178 bp):
GTAACGTTGTAACAGAGATTTCCTCAACCAAATATCATCAAACATTCTTCCCTTAGTGAGCTTAT
CCATTCCTGTCATCTCAAAAACCATCCCAAGTCACCCAAAATAACTTAAAATTTAAACAAAACAA
GTTCGTGGGACAAAAGGATAAAAAAAACTCAATGGTTATGGAATCAAT
Found at i:24158616 original size:23 final size:23
Alignment explanation
Indices: 24158589--24158687 Score: 162
Period size: 23 Copynumber: 4.3 Consensus size: 23
24158579 AGTGTTATTG
*
24158589 ATCAGTGGTAGCTTCGGCTACGT
1 ATCAGTGGTAGCTTCGGCTACAT
*
24158612 TTCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
*
24158635 AACAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
*
24158658 TTCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
24158681 ATCAGTG
1 ATCAGTG
24158688 TTGCACTTAT
Statistics
Matches: 69, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 69 1.00
ACGTcount: A:0.20, C:0.21, G:0.27, T:0.31
Consensus pattern (23 bp):
ATCAGTGGTAGCTTCGGCTACAT
Found at i:24164131 original size:69 final size:69
Alignment explanation
Indices: 24164020--24164188 Score: 275
Period size: 69 Copynumber: 2.4 Consensus size: 69
24164010 TTCTCCTATA
* * *
24164020 TATTAATCACCAATTTATTGAAAGTAAATATTAGTATATATTCCTATCGGGTTAGGTTTAAAGAA
1 TATTAATCACCAATTTATTGAAAGTAAATATTAATATATATTCCTATCAGGTTAGGTTGAAAGAA
*
24164085 TTTT
66 CTTT
* * *
24164089 TATTAATCATCAATTTATTGAAAGTAAATATTAATGTATATTCCTATCAGGTTAGGTTGAAAGTA
1 TATTAATCACCAATTTATTGAAAGTAAATATTAATATATATTCCTATCAGGTTAGGTTGAAAGAA
24164154 CTTT
66 CTTT
24164158 TATTAATCACCAATTTATTGAAAGTAAATAT
1 TATTAATCACCAATTTATTGAAAGTAAATAT
24164189 ATGAATTGAT
Statistics
Matches: 92, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
69 92 1.00
ACGTcount: A:0.38, C:0.09, G:0.12, T:0.41
Consensus pattern (69 bp):
TATTAATCACCAATTTATTGAAAGTAAATATTAATATATATTCCTATCAGGTTAGGTTGAAAGAA
CTTT
Found at i:24164777 original size:44 final size:43
Alignment explanation
Indices: 24164696--24164887 Score: 118
Period size: 44 Copynumber: 4.3 Consensus size: 43
24164686 ATCTTATTTT
* * * * *
24164696 CCTGAAGTTGTAGTGGAGCAGACTGAAGCTACTAATCCTATCTC
1 CCTGAAGTTGCAGTGGAGCAGACTAAAACCACGAATCCTATC-C
*
24164740 CCTGAAGTTGCAGTGGAGCAGATTAAAACCACGAATCCTATACC
1 CCTGAAGTTGCAGTGGAGCAGACTAAAACCACGAATCCTAT-CC
* * * * * * * *
24164784 TCTAAAGTTGCAGTAGG-TCGGATTAAATCTACCACAACAAGCCTTCTCTC
1 CCTGAAGTTGCAGT-GGAGCAGACTAAA---ACCAC--GAATCC-TATC-C
* * *
24164834 CCCGAAGTTGCAGTGGAGCAGACTAAAACCATGAAT-CTCGTCC
1 CCTGAAGTTGCAGTGGAGCAGACTAAAACCACGAATCCT-ATCC
24164877 CCTGAAGTTGC
1 CCTGAAGTTGC
24164888 TGCGGAGAGG
Statistics
Matches: 113, Mismatches: 24, Indels: 23
0.71 0.15 0.14
Matches are distributed among these distances:
43 12 0.11
44 59 0.52
45 5 0.04
47 9 0.08
49 7 0.06
50 21 0.19
ACGTcount: A:0.30, C:0.26, G:0.21, T:0.24
Consensus pattern (43 bp):
CCTGAAGTTGCAGTGGAGCAGACTAAAACCACGAATCCTATCC
Found at i:24166634 original size:23 final size:22
Alignment explanation
Indices: 24166608--24166651 Score: 61
Period size: 23 Copynumber: 2.0 Consensus size: 22
24166598 TTTATTCACA
* *
24166608 TACATTTATATTTTTCTTATATG
1 TACATATATATATTT-TTATATG
24166631 TACATATATATATTTTTATAT
1 TACATATATATATTTTTATAT
24166652 TTTATAATTT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 6 0.32
23 13 0.68
ACGTcount: A:0.32, C:0.07, G:0.02, T:0.59
Consensus pattern (22 bp):
TACATATATATATTTTTATATG
Found at i:24179758 original size:73 final size:73
Alignment explanation
Indices: 24179677--24179827 Score: 284
Period size: 73 Copynumber: 2.1 Consensus size: 73
24179667 ATAACTAAAA
*
24179677 AGCAAACGATCATCAAAATCAACTCTAGAACATGATCGTCAATAAACTAAAATTGGCAATTAAAA
1 AGCAAACGATCATCAAAATCAACTCTAGAACATGATCATCAATAAACTAAAATTGGCAATTAAAA
24179742 GAAACTAT
66 GAAACTAT
*
24179750 AGCAAACGATCATCAAAATCAACTCTAGAACATGATCATCAATAAACTCAAATTGGCAATTAAAA
1 AGCAAACGATCATCAAAATCAACTCTAGAACATGATCATCAATAAACTAAAATTGGCAATTAAAA
24179815 GAAACTAT
66 GAAACTAT
24179823 AGCAA
1 AGCAA
24179828 CCCCAAGAAT
Statistics
Matches: 76, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
73 76 1.00
ACGTcount: A:0.50, C:0.19, G:0.11, T:0.21
Consensus pattern (73 bp):
AGCAAACGATCATCAAAATCAACTCTAGAACATGATCATCAATAAACTAAAATTGGCAATTAAAA
GAAACTAT
Found at i:24183680 original size:106 final size:106
Alignment explanation
Indices: 24183495--24183703 Score: 357
Period size: 106 Copynumber: 2.0 Consensus size: 106
24183485 TGCTAGCTAC
24183495 CCTACCATACTCATTCCAAATTCAACTTTCACGAGGTCAAAAAATTCTTAAGAAGCTTTTGAAGA
1 CCTACCATACTCATTCCAAATTCAACTTTCACGAGGTCAAAAAATTCTTAAGAAGCTTTTGAAGA
*
24183560 AGTGAACTAAAAGAAAAATGTCATCCACATAGATTTGTTTA
66 AGTGAAATAAAAGAAAAATGTCATCCACATAGATTTGTTTA
* * * *
24183601 CCTACCATACTCATTCCAAATTCAGCTTTCACGAGGTTAACAAATTCTTAAGAAGTTTTTGAATG
1 CCTACCATACTCATTCCAAATTCAACTTTCACGAGGTCAAAAAATTCTTAAGAAGCTTTTGAA-G
24183666 -AGTGAAATAAAAGAAAAATGTCATCCACATAGATTTGT
65 AAGTGAAATAAAAGAAAAATGTCATCCACATAGATTTGT
24183704 GCTATTGTGA
Statistics
Matches: 97, Mismatches: 5, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
106 96 0.99
107 1 0.01
ACGTcount: A:0.39, C:0.18, G:0.13, T:0.30
Consensus pattern (106 bp):
CCTACCATACTCATTCCAAATTCAACTTTCACGAGGTCAAAAAATTCTTAAGAAGCTTTTGAAGA
AGTGAAATAAAAGAAAAATGTCATCCACATAGATTTGTTTA
Found at i:24186202 original size:18 final size:18
Alignment explanation
Indices: 24186179--24186213 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
24186169 TTTATTTTTA
* *
24186179 AATTTACTTTACCATTTG
1 AATTTAATTCACCATTTG
24186197 AATTTAATTCACCATTT
1 AATTTAATTCACCATTT
24186214 TCGTTATTTC
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.31, C:0.17, G:0.03, T:0.49
Consensus pattern (18 bp):
AATTTAATTCACCATTTG
Found at i:24199455 original size:5 final size:5
Alignment explanation
Indices: 24199445--24199469 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
24199435 TAATTGTATC
24199445 ATAAA ATAAA ATAAA ATAAA ATAAA
1 ATAAA ATAAA ATAAA ATAAA ATAAA
24199470 GACAAATTAG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (5 bp):
ATAAA
Found at i:24200914 original size:23 final size:22
Alignment explanation
Indices: 24200883--24200930 Score: 53
Period size: 23 Copynumber: 2.1 Consensus size: 22
24200873 AAATGAGGTG
*
24200883 TTTAAAAAT-TAATTTTAAATATT
1 TTTAAAAATAT-ATATT-AATATT
*
24200906 TTTATAAATATATATTAATATT
1 TTTAAAAATATATATTAATATT
24200928 TTT
1 TTT
24200931 TTTCTAATTT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
22 9 0.41
23 12 0.55
24 1 0.05
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (22 bp):
TTTAAAAATATATATTAATATT
Found at i:24201515 original size:21 final size:21
Alignment explanation
Indices: 24201491--24201537 Score: 53
Period size: 21 Copynumber: 2.2 Consensus size: 21
24201481 ATATTGCTAT
24201491 CAAAATT-TTAAG-TTAAAACAC
1 CAAAATTCTTAAGCTT-AAAC-C
*
24201512 CAAATTTCTTAAGCTTAAACC
1 CAAAATTCTTAAGCTTAAACC
24201533 CAAAA
1 CAAAA
24201538 GTATTAGAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
21 11 0.50
22 9 0.41
23 2 0.09
ACGTcount: A:0.49, C:0.19, G:0.04, T:0.28
Consensus pattern (21 bp):
CAAAATTCTTAAGCTTAAACC
Found at i:24203966 original size:164 final size:163
Alignment explanation
Indices: 24203733--24204063 Score: 601
Period size: 164 Copynumber: 2.0 Consensus size: 163
24203723 TTTTTTTAAA
24203733 TAATGATTTATTTCACCTTTTAATTTTATAAAATAAATATTTTAAATTTATTTAATTTATTTAAT
1 TAATGATTTATTTCACCTTTTAATTTTATAAAATAAATATTTTAAATTTATTTAATTTATTTAAT
* *
24203798 TTTTAGTTTTTAAATTTATATTATTTGTCAAATAACTTTAAAATAAATACAAAATTAACGTGCTG
66 TTTTAGTTTTTAAATTTATATTATTTATCAAATAACTCTAAAATAAATACAAAATTAACGTGCTG
*
24203863 ACATGCTATACATATGTATGTCAATTCAATAAT
131 ACATGCTATACATATATATGTCAATTCAATAAT
*
24203896 TAATGATTTATTTCACCTTTTAATTTTATAAAAATAAATATTTTAAATTTATTTAATTT-TTATC
1 TAATGATTTATTTCACCTTTTAATTTTAT-AAAATAAATATTTTAAATTTATTTAATTTATT-TA
24203960 ATTTTTAGTTTTTAAATTTATATTATTTATCAAATAACTCTAAAATAAATACAAAATTAACGTGC
64 ATTTTTAGTTTTTAAATTTATATTATTTATCAAATAACTCTAAAATAAATACAAAATTAACGTGC
24204025 TGACATGCTATACATATATATGTCAATTCAATAAT
129 TGACATGCTATACATATATATGTCAATTCAATAAT
24204060 TAAT
1 TAAT
24204064 TAATTTTTAA
Statistics
Matches: 162, Mismatches: 4, Indels: 3
0.96 0.02 0.02
Matches are distributed among these distances:
163 31 0.19
164 131 0.81
ACGTcount: A:0.40, C:0.08, G:0.05, T:0.47
Consensus pattern (163 bp):
TAATGATTTATTTCACCTTTTAATTTTATAAAATAAATATTTTAAATTTATTTAATTTATTTAAT
TTTTAGTTTTTAAATTTATATTATTTATCAAATAACTCTAAAATAAATACAAAATTAACGTGCTG
ACATGCTATACATATATATGTCAATTCAATAAT
Found at i:24204108 original size:8 final size:8
Alignment explanation
Indices: 24204072--24204099 Score: 56
Period size: 8 Copynumber: 3.5 Consensus size: 8
24204062 ATTAATTTTT
24204072 AAAATTAA
1 AAAATTAA
24204080 AAAATTAA
1 AAAATTAA
24204088 AAAATTAA
1 AAAATTAA
24204096 AAAA
1 AAAA
24204100 ATAATAAAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.79, C:0.00, G:0.00, T:0.21
Consensus pattern (8 bp):
AAAATTAA
Found at i:24204126 original size:8 final size:9
Alignment explanation
Indices: 24204072--24204148 Score: 53
Period size: 9 Copynumber: 9.3 Consensus size: 9
24204062 ATTAATTTTT
24204072 AAAATTA-A
1 AAAATTATA
24204080 AAAATTA-A
1 AAAATTATA
*
24204088 AAAATTAAA
1 AAAATTATA
*
24204097 AAAATAATA
1 AAAATTATA
24204106 AAAA--A-A
1 AAAATTATA
*
24204112 GATAATT-TA
1 -AAAATTATA
24204121 AAAATTAT-
1 AAAATTATA
*
24204129 -AAATTATT
1 AAAATTATA
24204137 AAAATTATA
1 AAAATTATA
24204146 AAA
1 AAA
24204149 CATATATTTT
Statistics
Matches: 56, Mismatches: 5, Indels: 15
0.74 0.07 0.20
Matches are distributed among these distances:
6 1 0.02
7 11 0.20
8 20 0.36
9 24 0.43
ACGTcount: A:0.70, C:0.00, G:0.01, T:0.29
Consensus pattern (9 bp):
AAAATTATA
Found at i:24206957 original size:23 final size:23
Alignment explanation
Indices: 24206914--24206957 Score: 54
Period size: 23 Copynumber: 1.9 Consensus size: 23
24206904 CAAATTATCA
* *
24206914 AGAAAAACTTAAAGAGTAAAATT
1 AGAAAAACTTAAACAGGAAAATT
24206937 AGAAAAGA-TTAAACAGGAAAA
1 AGAAAA-ACTTAAACAGGAAAA
24206958 AGAAAACAGC
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
23 17 0.94
24 1 0.06
ACGTcount: A:0.64, C:0.05, G:0.16, T:0.16
Consensus pattern (23 bp):
AGAAAAACTTAAACAGGAAAATT
Found at i:24214773 original size:2 final size:2
Alignment explanation
Indices: 24214761--24214806 Score: 83
Period size: 2 Copynumber: 22.5 Consensus size: 2
24214751 TCCTTTCAAG
24214761 AT AT CAT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT -AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
24214804 AT A
1 AT A
24214807 GTTCAATTCA
Statistics
Matches: 43, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
2 41 0.95
3 2 0.05
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:24216946 original size:21 final size:21
Alignment explanation
Indices: 24216920--24216959 Score: 64
Period size: 21 Copynumber: 1.9 Consensus size: 21
24216910 CCGGTGTGGC
24216920 TACCCCACAC-GCCCGTATGGA
1 TACCCCACACAG-CCGTATGGA
24216941 TACCCCACACAGCCGTATG
1 TACCCCACACAGCCGTATG
24216960 CTCAAACCGT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 17 0.94
22 1 0.06
ACGTcount: A:0.25, C:0.42, G:0.17, T:0.15
Consensus pattern (21 bp):
TACCCCACACAGCCGTATGGA
Found at i:24217732 original size:47 final size:47
Alignment explanation
Indices: 24217659--24218037 Score: 478
Period size: 47 Copynumber: 8.1 Consensus size: 47
24217649 GCATATATAT
*
24217659 ATATATACACAAAATTGGACAGCATTTATACACCAAAATTTGACAGC
1 ATATATATACAAAATTGGACAGCATTTATACACCAAAATTTGACAGC
* * * *
24217706 ATATATATACAAAATTGGACAACATTTATACACTAAAATTGGGCAGC
1 ATATATATACAAAATTGGACAGCATTTATACACCAAAATTTGACAGC
* * *
24217753 ATATATATACCAATTTGGACAGCACTTATACA-CAAAATTTGACAGC
1 ATATATATACAAAATTGGACAGCATTTATACACCAAAATTTGACAGC
* *
24217799 ATGTATATACAAAATTGGACAGCACTTATACA-CAAAATTTGACAGC
1 ATATATATACAAAATTGGACAGCATTTATACACCAAAATTTGACAGC
* * * *
24217845 ATGTATATACAAAATTGGACAACATTTATACACTAAAA-TTGCGCAGC
1 ATATATATACAAAATTGGACAGCATTTATACACCAAAATTTG-ACAGC
* * * *
24217892 ATATATATACCAATTTGGACAGCACTTATACA-CAAAATTTGACAAC
1 ATATATATACAAAATTGGACAGCATTTATACACCAAAATTTGACAGC
* * * * *
24217938 ATGTATATATAAAATTGGACAGCATTTATACACTAAAATTGGGCAGC
1 ATATATATACAAAATTGGACAGCATTTATACACCAAAATTTGACAGC
* * * *
24217985 ATATATATACCAATTTGGACAGCATTTATACACCAAAATTGGGCAGC
1 ATATATATACAAAATTGGACAGCATTTATACACCAAAATTTGACAGC
24218032 ATATAT
1 ATATAT
24218038 TCGATTTTTG
Statistics
Matches: 287, Mismatches: 41, Indels: 8
0.85 0.12 0.02
Matches are distributed among these distances:
46 121 0.42
47 166 0.58
ACGTcount: A:0.42, C:0.17, G:0.12, T:0.28
Consensus pattern (47 bp):
ATATATATACAAAATTGGACAGCATTTATACACCAAAATTTGACAGC
Found at i:24217819 original size:93 final size:93
Alignment explanation
Indices: 24217659--24218037 Score: 492
Period size: 93 Copynumber: 4.1 Consensus size: 93
24217649 GCATATATAT
* *
24217659 ATATATACACAAAATTGGACAGCATTTATACACCAAAATTTGACAGCATATATATACAAAATTGG
1 ATATATATACAAAATTGGACAGCATTTATACACTAAAATTTGACAGCATATATATACAAAATTGG
* * *
24217724 ACAACATTTATACACTAAAATTGGGCAGC
66 ACAGCACTTATACAC-AAAATTGGACAGC
* * * *
24217753 ATATATATACCAATTTGGACAGCACTTATACAC-AAAATTTGACAGCATGTATATACAAAATTGG
1 ATATATATACAAAATTGGACAGCATTTATACACTAAAATTTGACAGCATATATATACAAAATTGG
*
24217817 ACAGCACTTATACACAAAATTTGACAGC
66 ACAGCACTTATACACAAAATTGGACAGC
* * * * *
24217845 ATGTATATACAAAATTGGACAACATTTATACACTAAAA-TTGCGCAGCATATATATACCAATTTG
1 ATATATATACAAAATTGGACAGCATTTATACACTAAAATTTG-ACAGCATATATATACAAAATTG
* *
24217909 GACAGCACTTATACACAAAATTTGACAAC
65 GACAGCACTTATACACAAAATTGGACAGC
* * * * * *
24217938 ATGTATATATAAAATTGGACAGCATTTATACACTAAAATTGGGCAGCATATATATACCAATTTGG
1 ATATATATACAAAATTGGACAGCATTTATACACTAAAATTTGACAGCATATATATACAAAATTGG
* *
24218003 ACAGCATTTATACACCAAAATTGGGCAGC
66 ACAGCACTTATACA-CAAAATTGGACAGC
24218032 ATATAT
1 ATATAT
24218038 TCGATTTTTG
Statistics
Matches: 254, Mismatches: 27, Indels: 8
0.88 0.09 0.03
Matches are distributed among these distances:
92 42 0.17
93 165 0.65
94 47 0.19
ACGTcount: A:0.42, C:0.17, G:0.12, T:0.28
Consensus pattern (93 bp):
ATATATATACAAAATTGGACAGCATTTATACACTAAAATTTGACAGCATATATATACAAAATTGG
ACAGCACTTATACACAAAATTGGACAGC
Found at i:24217918 original size:139 final size:139
Alignment explanation
Indices: 24217662--24218037 Score: 626
Period size: 139 Copynumber: 2.7 Consensus size: 139
24217652 TATATATATA
*
24217662 TATACACAAAATTGGACAGCATTTATACACCAAAATTTGACAGCATATATATACAAAATTGGACA
1 TATATACAAAATTGGACAGCATTTATACA-CAAAATTTGACAGCATATATATACAAAATTGGACA
24217727 ACATTTATACACTAAAATTGGGCAGCATATATATACCAATTTGGACAGCACTTATACACAAAATT
65 ACATTTATACACTAAAATTGGGCAGCATATATATACCAATTTGGACAGCACTTATACACAAAATT
*
24217792 TGACAGCATG
130 TGACAACATG
* *
24217802 TATATACAAAATTGGACAGCACTTATACACAAAATTTGACAGCATGTATATACAAAATTGGACAA
1 TATATACAAAATTGGACAGCATTTATACACAAAATTTGACAGCATATATATACAAAATTGGACAA
*
24217867 CATTTATACACTAAAATTGCGCAGCATATATATACCAATTTGGACAGCACTTATACACAAAATTT
66 CATTTATACACTAAAATTGGGCAGCATATATATACCAATTTGGACAGCACTTATACACAAAATTT
24217932 GACAACATG
131 GACAACATG
* * * * *
24217941 TATATATAAAATTGGACAGCATTTATACACTAAAATTGGGCAGCATATATATACCAATTTGGACA
1 TATATACAAAATTGGACAGCATTTATACAC-AAAATTTGACAGCATATATATACAAAATTGGACA
* *
24218006 GCATTTATACACCAAAATTGGGCAGCATATAT
65 ACATTTATACACTAAAATTGGGCAGCATATAT
24218038 TCGATTTTTG
Statistics
Matches: 220, Mismatches: 15, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
139 135 0.61
140 85 0.39
ACGTcount: A:0.42, C:0.17, G:0.12, T:0.28
Consensus pattern (139 bp):
TATATACAAAATTGGACAGCATTTATACACAAAATTTGACAGCATATATATACAAAATTGGACAA
CATTTATACACTAAAATTGGGCAGCATATATATACCAATTTGGACAGCACTTATACACAAAATTT
GACAACATG
Found at i:24219019 original size:43 final size:43
Alignment explanation
Indices: 24218927--24219043 Score: 141
Period size: 43 Copynumber: 2.7 Consensus size: 43
24218917 GAAACTCGTA
** *
24218927 CAATGCCAACGTCCCAGACGTGGTCTTACATGTAATCACATAT
1 CAATGCCAACGTCCCAGACGTGGTCTTACACATAAACACATAT
*
24218970 CGATGCC-ACTGTCCCAGACAG-GGTCTTACACATAAACACA-AGT
1 CAATGCCAAC-GTCCCAGAC-GTGGTCTTACACATAAACACATA-T
*
24219013 CAATGCCAACGTCTCAGACGTGGTCTTACAC
1 CAATGCCAACGTCCCAGACGTGGTCTTACAC
24219044 GATAGTACAT
Statistics
Matches: 63, Mismatches: 6, Indels: 10
0.80 0.08 0.13
Matches are distributed among these distances:
42 4 0.06
43 56 0.89
44 3 0.05
ACGTcount: A:0.30, C:0.30, G:0.18, T:0.22
Consensus pattern (43 bp):
CAATGCCAACGTCCCAGACGTGGTCTTACACATAAACACATAT
Found at i:24222088 original size:24 final size:23
Alignment explanation
Indices: 24222056--24222108 Score: 97
Period size: 24 Copynumber: 2.3 Consensus size: 23
24222046 AATATATTTT
24222056 TTTTATTTTTAATCAAATATATA
1 TTTTATTTTTAATCAAATATATA
24222079 TATTTATTTTTAATCAAATATATA
1 T-TTTATTTTTAATCAAATATATA
24222103 TTTTAT
1 TTTTAT
24222109 ATACATTAAA
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
23 6 0.21
24 23 0.79
ACGTcount: A:0.38, C:0.04, G:0.00, T:0.58
Consensus pattern (23 bp):
TTTTATTTTTAATCAAATATATA
Found at i:24222102 original size:22 final size:22
Alignment explanation
Indices: 24222057--24222128 Score: 83
Period size: 22 Copynumber: 3.2 Consensus size: 22
24222047 ATATATTTTT
24222057 TTTATTTTTAATCAAATATATATA
1 TTTATTTTTAATC-AA-ATATATA
24222081 TTTATTTTTAATCAAATATATA
1 TTTATTTTTAATCAAATATATA
* * *
24222103 TTT-TATATACATTAAATATATA
1 TTTATTTTTA-ATCAAATATATA
24222125 TTTA
1 TTTA
24222129 ATATGGGCCG
Statistics
Matches: 43, Mismatches: 3, Indels: 5
0.84 0.06 0.10
Matches are distributed among these distances:
21 4 0.09
22 24 0.56
23 2 0.05
24 13 0.30
ACGTcount: A:0.42, C:0.04, G:0.00, T:0.54
Consensus pattern (22 bp):
TTTATTTTTAATCAAATATATA
Found at i:24222109 original size:29 final size:27
Alignment explanation
Indices: 24222045--24222110 Score: 79
Period size: 24 Copynumber: 2.6 Consensus size: 27
24222035 ATTATATATT
24222045 AAATATATTTT-T-TTTATTTTTAATC
1 AAATATATTTTATATTTATTTTTAATC
24222070 AAATATA---TATATTTATTTTTAATC
1 AAATATATTTTATATTTATTTTTAATC
24222094 AAATATATATTTTATAT
1 -AA-ATATATTTTATAT
24222111 ACATTAAATA
Statistics
Matches: 34, Mismatches: 0, Indels: 10
0.77 0.00 0.23
Matches are distributed among these distances:
22 1 0.03
23 1 0.03
24 13 0.38
25 9 0.26
26 5 0.15
29 5 0.15
ACGTcount: A:0.39, C:0.03, G:0.00, T:0.58
Consensus pattern (27 bp):
AAATATATTTTATATTTATTTTTAATC
Found at i:24224713 original size:43 final size:43
Alignment explanation
Indices: 24224601--24224714 Score: 124
Period size: 43 Copynumber: 2.7 Consensus size: 43
24224591 TGTGTTTTCG
* * * *
24224601 TGTAAGACCACGTCTGGGACGTTGACATCGACCTGTGTTTACT
1 TGTAAGACCACGTCTGGGACGTTGGCATCGACATGTGATTACA
* **
24224644 TGTAAGAACC-TGTCTGGGACAG-TGGCATCGGTATGTGATTACA
1 TGTAAG-ACCACGTCTGGGAC-GTTGGCATCGACATGTGATTACA
*
24224687 TGTAAGACCACGTCTAGGACGTTGGCAT
1 TGTAAGACCACGTCTGGGACGTTGGCAT
24224715 TGTACAAGCT
Statistics
Matches: 58, Mismatches: 9, Indels: 8
0.77 0.12 0.11
Matches are distributed among these distances:
42 4 0.07
43 50 0.86
44 4 0.07
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.28
Consensus pattern (43 bp):
TGTAAGACCACGTCTGGGACGTTGGCATCGACATGTGATTACA
Found at i:24226025 original size:6 final size:6
Alignment explanation
Indices: 24226014--24226085 Score: 144
Period size: 6 Copynumber: 12.0 Consensus size: 6
24226004 GTAATGGATG
24226014 GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT
1 GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT
24226062 GTATAT GTATAT GTATAT GTATAT
1 GTATAT GTATAT GTATAT GTATAT
24226086 AATAGCCAAG
Statistics
Matches: 66, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 66 1.00
ACGTcount: A:0.33, C:0.00, G:0.17, T:0.50
Consensus pattern (6 bp):
GTATAT
Found at i:24237780 original size:30 final size:30
Alignment explanation
Indices: 24237693--24237792 Score: 128
Period size: 30 Copynumber: 3.3 Consensus size: 30
24237683 GTCACCACGA
* * *
24237693 ACCATTTTCCGTTACAGACGTAACGGAACT
1 ACCATTTTTCGTTACAGACTTAACGGAGCT
*
24237723 ACCATTTTTCATTACAGACTTAACGGAGCT
1 ACCATTTTTCGTTACAGACTTAACGGAGCT
* * *
24237753 CCCATTTTTCGTTAAAGACTTAACGGAGTT
1 ACCATTTTTCGTTACAGACTTAACGGAGCT
*
24237783 TCCATTTTTC
1 ACCATTTTTC
24237793 ATCCCCCTAT
Statistics
Matches: 61, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 61 1.00
ACGTcount: A:0.27, C:0.24, G:0.14, T:0.35
Consensus pattern (30 bp):
ACCATTTTTCGTTACAGACTTAACGGAGCT
Found at i:24249772 original size:16 final size:15
Alignment explanation
Indices: 24249724--24249773 Score: 57
Period size: 16 Copynumber: 3.2 Consensus size: 15
24249714 TATTTAATTT
24249724 AAAT-TTTATGAAAGTA
1 AAATATTTATGAAA--A
24249740 AAATATTTATGTAAAA
1 AAATATTTATG-AAAA
*
24249756 ATATATTTATGAAAA
1 AAATATTTATGAAAA
24249771 AAA
1 AAA
24249774 AAGCACAAAT
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
15 6 0.20
16 15 0.50
17 6 0.20
18 3 0.10
ACGTcount: A:0.56, C:0.00, G:0.08, T:0.36
Consensus pattern (15 bp):
AAATATTTATGAAAA
Found at i:24250740 original size:19 final size:20
Alignment explanation
Indices: 24250718--24250758 Score: 50
Period size: 20 Copynumber: 2.1 Consensus size: 20
24250708 TAATTAAATT
24250718 AATT-TAAAATAATAA-TTAA
1 AATTATAAAAT-ATAATTTAA
*
24250737 AATTATTAAATATAATTTAA
1 AATTATAAAATATAATTTAA
24250757 AA
1 AA
24250759 ATACTATATC
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
19 8 0.42
20 11 0.58
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (20 bp):
AATTATAAAATATAATTTAA
Found at i:24256832 original size:22 final size:23
Alignment explanation
Indices: 24256807--24256853 Score: 69
Period size: 22 Copynumber: 2.1 Consensus size: 23
24256797 TGCCACTATT
24256807 TTGCTACAATTTCATTATT-ATG
1 TTGCTACAATTTCATTATTAATG
* *
24256829 TTGCTACTATTTTATTATTAATG
1 TTGCTACAATTTCATTATTAATG
24256852 TT
1 TT
24256854 TGGATATTAT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
22 17 0.77
23 5 0.23
ACGTcount: A:0.26, C:0.11, G:0.09, T:0.55
Consensus pattern (23 bp):
TTGCTACAATTTCATTATTAATG
Found at i:24260208 original size:30 final size:29
Alignment explanation
Indices: 24260130--24260210 Score: 81
Period size: 29 Copynumber: 2.8 Consensus size: 29
24260120 AAATTTGATT
* * *
24260130 AAAATAACAAAACAGTCATTAAACTTTGA
1 AAAATAACAAAACAATCACTAAACTTTCA
* ***
24260159 AAAATTACAATTTAATCACTAAACTTTACA
1 AAAATAACAAAACAATCACTAAACTTT-CA
*
24260189 AAAATAACAAAACATTCACTAA
1 AAAATAACAAAACAATCACTAA
24260211 CGTTATCGAA
Statistics
Matches: 39, Mismatches: 12, Indels: 1
0.75 0.23 0.02
Matches are distributed among these distances:
29 21 0.54
30 18 0.46
ACGTcount: A:0.56, C:0.16, G:0.02, T:0.26
Consensus pattern (29 bp):
AAAATAACAAAACAATCACTAAACTTTCA
Found at i:24260979 original size:19 final size:19
Alignment explanation
Indices: 24260955--24261067 Score: 163
Period size: 19 Copynumber: 5.8 Consensus size: 19
24260945 AATTTTTGAA
24260955 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
**
24260974 GATATGCAATCCAAGATAT
1 GATATGCAATCTTAGATAT
*
24260993 GATATATGCAATCCTAGATAT
1 G--ATATGCAATCTTAGATAT
24261014 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
**
24261033 GATATATAATCTTAGATAT
1 GATATGCAATCTTAGATAT
24261052 GATATGCAATCTTAGA
1 GATATGCAATCTTAGA
24261068 ATATACGATT
Statistics
Matches: 84, Mismatches: 8, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
19 66 0.79
21 18 0.21
ACGTcount: A:0.39, C:0.12, G:0.15, T:0.35
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:24261000 original size:40 final size:40
Alignment explanation
Indices: 24260956--24261062 Score: 173
Period size: 40 Copynumber: 2.7 Consensus size: 40
24260946 ATTTTTGAAG
24260956 ATATGCAATCTTAGATATGATATGCAATCCAAGATATGAT
1 ATATGCAATCTTAGATATGATATGCAATCCAAGATATGAT
* **
24260996 ATATGCAATCCTAGATATGATATGCAATCTTAGATATGAT
1 ATATGCAATCTTAGATATGATATGCAATCCAAGATATGAT
24261036 ATAT--AATCTTAGATATGATATGCAATC
1 ATATGCAATCTTAGATATGATATGCAATC
24261063 TTAGAATATA
Statistics
Matches: 63, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
38 22 0.35
40 41 0.65
ACGTcount: A:0.39, C:0.12, G:0.14, T:0.35
Consensus pattern (40 bp):
ATATGCAATCTTAGATATGATATGCAATCCAAGATATGAT
Found at i:24262656 original size:98 final size:98
Alignment explanation
Indices: 24262526--24262722 Score: 340
Period size: 98 Copynumber: 2.0 Consensus size: 98
24262516 TAAAAAATAA
* * *
24262526 TAAAGGAAATATTCCGAGTTTGAGATTTTAAAGGAATTGTGCCCTAACGTATTGAGTGTGATTTC
1 TAAAGGAAATATTCCAAGTTTGAGATTCTAAAGGAATCGTGCCCTAACGTATTGAGTGTGATTTC
24262591 TTAAATCTTGGATAAGTGGATGTTCTTTTAAAG
66 TTAAATCTTGGATAAGTGGATGTTCTTTTAAAG
* *
24262624 TAAAGGAAATATTCCAAGTTTGGGATTCTAAAGGAATCGTGCCCTAACGTATTGGGTGTGATTTC
1 TAAAGGAAATATTCCAAGTTTGAGATTCTAAAGGAATCGTGCCCTAACGTATTGAGTGTGATTTC
*
24262689 TTAAATCTTGGTTAAGTGGATGTTCTTTTAAAG
66 TTAAATCTTGGATAAGTGGATGTTCTTTTAAAG
24262722 T
1 T
24262723 TTTATTGTAC
Statistics
Matches: 93, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
98 93 1.00
ACGTcount: A:0.29, C:0.10, G:0.23, T:0.38
Consensus pattern (98 bp):
TAAAGGAAATATTCCAAGTTTGAGATTCTAAAGGAATCGTGCCCTAACGTATTGAGTGTGATTTC
TTAAATCTTGGATAAGTGGATGTTCTTTTAAAG
Found at i:24268388 original size:44 final size:43
Alignment explanation
Indices: 24268215--24268522 Score: 110
Period size: 44 Copynumber: 7.0 Consensus size: 43
24268205 GTTGAATATT
* *
24268215 GTAGATCTTATCTCCCTAAGCAGTAGTAGAGCAGATCGAAGAC
1 GTAGACCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGAC
** * * **
24268258 GGCGAATCTTATCTTTCC-AAG-A-TAGTGGGAAGCAGATTTAAGCTAC
1 GTAG-ACCTTATC-TCCCTAAGCAGTAGT-GG-AGCAGATCGAAG--AC
** * * * ** * * * *
24268304 CAAG-CCTTGTCTCCCTCAGCAGCAACGGAGAAGGTTGAAGATT
1 GTAGACCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGA-C
24268347 GTAGACCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGAC
1 GTAGACCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGAC
** * * * **
24268390 GGCGAATCTTATCTTTCC-AAG-A-TAGTGGGAAGTAGATTTAAGCCAC
1 GTAG-ACCTTATC-TCCCTAAGCAGTAGT-GG-AGCAGATCGAAG--AC
** * * * * * *
24268436 CAAG-CCTTATCTCCCTCAGCAGTAGCGGAGAAGGTTGAAGATT
1 GTAGACCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGA-C
* *
24268479 GTAGATCTCATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGAC
1 GTAGACCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGAC
24268522 G
1 G
24268523 GCGAATCTTA
Statistics
Matches: 184, Mismatches: 59, Indels: 44
0.64 0.21 0.15
Matches are distributed among these distances:
42 10 0.05
43 20 0.11
44 132 0.72
45 12 0.07
46 10 0.05
ACGTcount: A:0.30, C:0.21, G:0.25, T:0.24
Consensus pattern (43 bp):
GTAGACCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGAC
Found at i:24268663 original size:44 final size:44
Alignment explanation
Indices: 24268615--24268946 Score: 201
Period size: 44 Copynumber: 7.7 Consensus size: 44
24268605 AAGATTGTAA
**
24268615 ATCTTATCTCCCTGAAGTTGCAGTGGAGTGGATTAAAACCTCAG
1 ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAACCTCAG
* * ** *** *
24268659 ATCTTATCTCTCTGAAGTTGTAG-AAAGCAGA-TCGCATCT-AG
1 ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAACCTCAG
* * * * *
24268700 -TCTTATCTTCCTGAAGTTGCAGTGGATCAGACTAAGTAAGC-AAG
1 ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAA--AACCTCAG
* * * ***
24268744 -TCTTATC-CTCCTGAAGTTGCAGTGGGGCAGACTGAAGATGGCA-
1 ATCTTATCTC-CCTGAAGTTGCAGTGGAGCAGA-TTAAAACCTCAG
*
24268787 AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCGAT-A-
1 A-TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAACC--TCAG
* * * *
24268832 ATCCTATCTCCCTGAAGTTGCATTGGAGCGGATTAAAACTTCAG
1 ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAACCTCAG
* *** *
24268876 A-CTTATCTCTCC-GAAGTTGCAG-AGAGCAGA-TCGTATCT-AG
1 ATCTTATCTC-CCTGAAGTTGCAGTGGAGCAGATTAAAACCTCAG
24268916 -TCTTATCTCCCTGAAGTTGCAGTGGAGCAGA
1 ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGA
24268947 CTAAGTAAGC
Statistics
Matches: 218, Mismatches: 51, Indels: 41
0.70 0.16 0.13
Matches are distributed among these distances:
39 2 0.01
40 39 0.18
41 17 0.08
42 12 0.06
43 22 0.10
44 93 0.43
45 32 0.15
46 1 0.00
ACGTcount: A:0.27, C:0.21, G:0.23, T:0.29
Consensus pattern (44 bp):
ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAACCTCAG
Found at i:24268690 original size:132 final size:132
Alignment explanation
Indices: 24268107--24268627 Score: 907
Period size: 132 Copynumber: 3.9 Consensus size: 132
24268097 TTGCATTGAC
* *
24268107 AGTGGAGCAGATCAAAGACGGTGAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCAC
1 AGTGGAGCAGATCGAAGACGGCGAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCAC
* * *
24268172 CAAGACTTGTCTCCCTGAGCAGCAGCGGAGAAGGTTGAATATTGTAGATCTTATCTCCCTAAGCA
66 CAAGCCTTGTCTCCCTCAGCAGCAGCGGAGAAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCA
24268237 GT
131 GT
* *
24268239 AGTAGAGCAGATCGAAGACGGCGAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCTAC
1 AGTGGAGCAGATCGAAGACGGCGAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCAC
* *
24268304 CAAGCCTTGTCTCCCTCAGCAGCAACGGAGAAGGTTGAAGATTGTAGACCTTATCTCCCTAAGCA
66 CAAGCCTTGTCTCCCTCAGCAGCAGCGGAGAAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCA
24268369 GT
131 GT
*
24268371 AGTGGAGCAGATCGAAGACGGCGAATCTTATCTTTCCAAGATAGTGGGAAGTAGATTTAAGCCAC
1 AGTGGAGCAGATCGAAGACGGCGAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCAC
* * *
24268436 CAAGCCTTATCTCCCTCAGCAGTAGCGGAGAAGGTTGAAGATTGTAGATCTCATCTCCCTAAGCA
66 CAAGCCTTGTCTCCCTCAGCAGCAGCGGAGAAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCA
24268501 GT
131 GT
24268503 AGTGGAGCAGATCGAAGACGGCGAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCAC
1 AGTGGAGCAGATCGAAGACGGCGAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCAC
* *
24268568 CAAGCCTTGTCTCCCTGAGCAGCAGCGGAGAAGGTTGAAGATTGTAAATCTTATCTCCCT
66 CAAGCCTTGTCTCCCTCAGCAGCAGCGGAGAAGGTTGAAGATTGTAGATCTTATCTCCCT
24268628 GAAGTTGCAG
Statistics
Matches: 366, Mismatches: 23, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
132 366 1.00
ACGTcount: A:0.30, C:0.21, G:0.25, T:0.24
Consensus pattern (132 bp):
AGTGGAGCAGATCGAAGACGGCGAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCAC
CAAGCCTTGTCTCCCTCAGCAGCAGCGGAGAAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCA
GT
Found at i:24268803 original size:45 final size:44
Alignment explanation
Indices: 24268698--24268966 Score: 222
Period size: 44 Copynumber: 6.2 Consensus size: 44
24268688 GATCGCATCT
* *
24268698 AGTCTTATCTTCCTGAAGTTGCAGTGGATCAGACTAAGTAAGCA
1 AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAGCA
* *
24268742 AGTCTTATC-CTCCTGAAGTTGCAGTGGGGCAGACTGAAG-ATGGCA
1 AGTCTTATCTC-CCTGAAGTTGCAGTGGAGCAGACT-AAGTA-AGCA
*
24268787 AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGA-TTA--AAGCCGA
1 AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAG-C-A
* * * * * *
24268830 TAATCCTATCTCCCTGAAGTTGCATTGGAGCGGATTAA--AA-CTTC
1 -AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAGC--A
* * * * *
24268874 AGACTTATCTCTCC-GAAGTTGCAG-AGAGCAGA-T-CGT-ATCT
1 AGTCTTATCTC-CCTGAAGTTGCAGTGGAGCAGACTAAGTAAGCA
24268914 AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAGCA
1 AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAGCA
24268958 AGTCTTATC
1 AGTCTTATC
24268967 CTCCNNNNNN
Statistics
Matches: 180, Mismatches: 27, Indels: 36
0.74 0.11 0.15
Matches are distributed among these distances:
39 2 0.01
40 20 0.11
41 10 0.06
42 10 0.06
43 22 0.12
44 75 0.42
45 40 0.22
46 1 0.01
ACGTcount: A:0.28, C:0.21, G:0.24, T:0.28
Consensus pattern (44 bp):
AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAGCA
Found at i:24270048 original size:132 final size:132
Alignment explanation
Indices: 24269810--24271226 Score: 2318
Period size: 132 Copynumber: 10.7 Consensus size: 132
24269800 NNNNNNNNNN
*
24269810 TTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCAGTAATTCTACTTCCCTGGACAACAGTG
1 TTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCAGTAATTCTACTTCCCTGGGCAACAGTG
24269875 GAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGCGGA
66 GAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGCGGA
24269940 TT
131 TT
* * *
24269942 TTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCTAGTAATTCTACTTCTCTGGGCAACAGTA
1 TTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCAGTAATTCTACTTCCCTGGGCAACAGTG
* * *
24270007 GAATAGATTGAAGATTTCAGATCTTATCTCCTTAAGTAGTAGTGGAGCAGATCGAAGATGGCAGA
66 GAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGCGGA
24270072 TT
131 TT
*
24270074 TTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCAGTAATTCTACTTCCCTGGACAACAGTG
1 TTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCAGTAATTCTACTTCCCTGGGCAACAGTG
* *
24270139 GAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATTGAAGATGGCAGA
66 GAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGCGGA
24270204 TT
131 TT
* *
24270206 TTACCTTCCTGTGGTTATAGTGGAGTACATTGAAGCCAGTAATTCTACTTCCCTAGGCAACAGTG
1 TTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCAGTAATTCTACTTCCCTGGGCAACAGTG
24270271 GAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGCGGA
66 GAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGCGGA
24270336 TT
131 TT
* *
24270338 TTACCTCCCTATAGTTATAGTGGAGTACATTGAAGCCAGTAATTCTACTTCCCTGGGCAACAGTG
1 TTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCAGTAATTCTACTTCCCTGGGCAACAGTG
* * *
24270403 GAATAGATTGAAGATTTCAGATTTTATCTCTCTAAGCAGTAGTGGAGCAGATCGAAGATGGCAGA
66 GAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGCGGA
24270468 TT
131 TT
*
24270470 TTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTACTTCCCTGGGCAACAGTG
1 TTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCAGTAATTCTACTTCCCTGGGCAACAGTG
* *
24270535 GAATAGATTGAAGATTTCAGATCTTATCTCTCTAAGCAGTAGTAGAGCAGATCGAAGATGGCGGA
66 GAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGCGGA
24270600 TT
131 TT
* * * * *
24270602 TTACCTTCTTGTGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTACTTCCTTGGAC-ACAGTG
1 TTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCAGTAATTCTACTTCCCTGGGCAACAGTG
* *
24270666 GAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATTGGAGATGGCGGA
66 GAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGCGGA
24270731 TT
131 TT
* * *
24270733 TTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCGGTAATTCTACTTCCCTAGACAACAGTG
1 TTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCAGTAATTCTACTTCCCTGGGCAACAGTG
* * * * *
24270798 GAATAGATTGAAAATTTTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATTGGAGATGGCGGG
66 GAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGCGGA
24270863 TT
131 TT
* * *
24270865 TTACCTCCCTGTGGCTATAGTGGAGTACATTGAAGCCAGTAATTCTACTTCCCTAGACAACAGTG
1 TTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCAGTAATTCTACTTCCCTGGGCAACAGTG
*
24270930 GAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGTAGTAGAGCAGATCGAAGATGGCGGA
66 GAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGCGGA
24270995 TT
131 TT
* * * *
24270997 TTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCTAGTAATTCTACTTTCCTAGGCAATAGTG
1 TTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCAGTAATTCTACTTCCCTGGGCAACAGTG
* * *
24271062 AAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGTAGTGGAGTAGATCGAAGATGGTGGA
66 GAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGCGGA
24271127 TT
131 TT
* * * * * *
24271129 TTACCTCCCTGTGGTTACAGTGGAGTACATTAAAGTCAGTAATCCTA-TCTCCCTGGTCAGCAGT
1 TTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCAGTAATTCTACT-TCCCTGGGCAACAGT
*
24271193 GGAATAGATTGAAGATTGTAAG-TCTTATCTCCCT
65 GGAATAGATTGAAGATT-TCAGATCTTATCTCCCT
24271227 GCAGTTGCAG
Statistics
Matches: 1204, Mismatches: 78, Indels: 6
0.93 0.06 0.00
Matches are distributed among these distances:
131 122 0.10
132 1079 0.90
133 3 0.00
ACGTcount: A:0.28, C:0.18, G:0.24, T:0.30
Consensus pattern (132 bp):
TTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCAGTAATTCTACTTCCCTGGGCAACAGTG
GAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGCGGA
TT
Found at i:24270183 original size:44 final size:44
Alignment explanation
Indices: 24269871--24271120 Score: 238
Period size: 44 Copynumber: 28.4 Consensus size: 44
24269861 CCTGGACAAC
* *
24269871 AGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGT
1 AGTGGAGTAGATTGAAGATTTCAGATTTTATCTCCCTAAGCAGT
* * ** * * ** *
24269915 AGTGGAGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTA-T
1 AGTGGAGTAGATTGAAGATTTCAGATTTTATCTCCCT-AAG-CAGT
* * * * * ** **
24269960 AGTGGAGTACATTGAAGCTAGT-A-ATTCTA-CTTCTCTGGGCAAC
1 AGTGGAGTAGATTGAAGAT-TTCAGATTTTATC-TCCCTAAGCAGT
* * * * *
24270003 AGTAGAATAGATTGAAGATTTCAGATCTTATCTCCTTAAGTAGT
1 AGTGGAGTAGATTGAAGATTTCAGATTTTATCTCCCTAAGCAGT
* * ** * ** *
24270047 AGTGGAGCAGATCGAAGATGGCAGATTTTACCTCCCTGTGGTTA-T
1 AGTGGAGTAGATTGAAGATTTCAGATTTTATCTCCCT-AAG-CAGT
* * * * **
24270092 AGTGGAGTACATTGAAG---CCAGTAATTCTA-CTTCCCT-GGACAAC
1 AGTGGAGTAGATTGAAGATTTCAG--ATTTTATC-TCCCTAAG-CAGT
* *
24270135 AGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGT
1 AGTGGAGTAGATTGAAGATTTCAGATTTTATCTCCCTAAGCAGT
* ** * * ** *
24270179 AGTGGAGCAGATTGAAGATGGCAGATTTTACCTTCCTGTGGTTA-T
1 AGTGGAGTAGATTGAAGATTTCAGATTTTATCTCCCT-AAG-CAGT
* * * * **
24270224 AGTGGAGTACATTGAAG---CCAGTAATTCTA-CTTCCCTAGGCAAC
1 AGTGGAGTAGATTGAAGATTTCAG--ATTTTATC-TCCCTAAGCAGT
* *
24270267 AGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGT
1 AGTGGAGTAGATTGAAGATTTCAGATTTTATCTCCCTAAGCAGT
* * ** * * *
24270311 AGTGGAGCAGATCGAAGATGGCGGATTTTACCTCCCTATAGTTA-T
1 AGTGGAGTAGATTGAAGATTTCAGATTTTATCTCCCTA-AG-CAGT
* * * ** **
24270356 AGTGGAGTACATTGAAG---CCAGTAATTCTA-CTTCCCTGGGCAAC
1 AGTGGAGTAGATTGAAGATTTCAG--ATTTTATC-TCCCTAAGCAGT
* *
24270399 AGTGGAATAGATTGAAGATTTCAGATTTTATCTCTCTAAGCAGT
1 AGTGGAGTAGATTGAAGATTTCAGATTTTATCTCCCTAAGCAGT
* * ** * **
24270443 AGTGGAGCAGATCGAAGATGGCAGATTTTACCTCCCT--GTGGTT
1 AGTGGAGTAGATTGAAGATTTCAGATTTTATCTCCCTAAGCAG-T
* * * ** **
24270486 ACAGTGGAGTACATTGAAG---CCAGTAATTCTA-CTTCCCTGGGCAAC
1 --AGTGGAGTAGATTGAAGATTTCAG--ATTTTATC-TCCCTAAGCAGT
* * *
24270531 AGTGGAATAGATTGAAGATTTCAGATCTTATCTCTCTAAGCAGT
1 AGTGGAGTAGATTGAAGATTTCAGATTTTATCTCCCTAAGCAGT
* * * ** * * * * **
24270575 AGTAGAGCAGATCGAAGATGGCGGATTTTACCT-TCT-TGTGGTT
1 AGTGGAGTAGATTGAAGATTTCAGATTTTATCTCCCTAAGCAG-T
* * * * ** *
24270618 ACAGTGGAGTACATTGAAG---CCAGTAATTCTA-CTTCCTTGGACA-C
1 --AGTGGAGTAGATTGAAGATTTCAG--ATTTTATCTCCCTAAG-CAGT
* *
24270662 AGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGT
1 AGTGGAGTAGATTGAAGATTTCAGATTTTATCTCCCTAAGCAGT
* * ** * * ** *
24270706 AGTGGAGCAGATTGGAGATGGCGGATTTTACCTCCCTGTGGTTA-T
1 AGTGGAGTAGATTGAAGATTTCAGATTTTATCTCCCT-AAG-CAGT
* *** * **
24270751 AGTGGAGTACATTGAAGCCGGT-A-ATTCTA-CTTCCCT-AGACAAC
1 AGTGGAGTAGATTGAAG-ATTTCAGATTTTATC-TCCCTAAG-CAGT
* * * *
24270794 AGTGGAATAGATTGAAAATTTTAGATCTTATCTCCCTAAGCAGT
1 AGTGGAGTAGATTGAAGATTTCAGATTTTATCTCCCTAAGCAGT
* * ** * * * **
24270838 AGTGGAGCAGATTGGAGATGGCGGGTTTTACCTCCCTGTGGCTA-T
1 AGTGGAGTAGATTGAAGATTTCAGATTTTATCTCCCT-AAGC-AGT
* * * **
24270883 AGTGGAGTACATTGAAG---CCAGTAATTCTA-CTTCCCT-AGACAAC
1 AGTGGAGTAGATTGAAGATTTCAG--ATTTTATC-TCCCTAAG-CAGT
* *
24270926 AGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGT
1 AGTGGAGTAGATTGAAGATTTCAGATTTTATCTCCCTAAGCAGT
* * * ** * * ** *
24270970 AGTAGAGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTA-T
1 AGTGGAGTAGATTGAAGATTTCAGATTTTATCTCCCT-AAG-CAGT
* * * * * * *
24271015 AGTGGAGTACATTGAAGCTAGT-A-ATTCTA-CTTTCCTAGGCAAT
1 AGTGGAGTAGATTGAAGAT-TTCAGATTTTATC-TCCCTAAGCAGT
* * *
24271058 AGTGAAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGT
1 AGTGGAGTAGATTGAAGATTTCAGATTTTATCTCCCTAAGCAGT
*
24271102 AGTGGAGTAGATCGAAGAT
1 AGTGGAGTAGATTGAAGAT
24271121 GGTGGATTTT
Statistics
Matches: 837, Mismatches: 276, Indels: 186
0.64 0.21 0.14
Matches are distributed among these distances:
42 48 0.06
43 152 0.18
44 450 0.54
45 160 0.19
46 27 0.03
ACGTcount: A:0.29, C:0.17, G:0.24, T:0.30
Consensus pattern (44 bp):
AGTGGAGTAGATTGAAGATTTCAGATTTTATCTCCCTAAGCAGT
Done.