Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr09 ID=Chr09-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 70713020
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 1142373 characters in sequence are not A, C, G, or T
File 68 of 226
Found at i:25957233 original size:82 final size:82
Alignment explanation
Indices: 25957096--25957278 Score: 203
Period size: 82 Copynumber: 2.2 Consensus size: 82
25957086 GCGCTTCAAC
* * *
25957096 AAAAACGCCGCTAAAACCCCAACATTAGCGGCGCTTATCATAGAATCGCCACTAAAAATCTTAAC
1 AAAAACGCCGCTAAAACCCAAACATTAGCGGCGCTTATCAAAGAATCGCCACTAAAAACCTTAAC
25957161 TTTAGCGTTGCTTATAT
66 TTTAGCGTTGCTTATAT
* * * *
25957178 AAAAACGCCGCTATAAGA-CCAAATATTCGCGGCGC-T-TCAAAGAAATCGCCGCTAAATACCTT
1 AAAAACGCCGCTA-AA-ACCCAAACATTAGCGGCGCTTATCAAAG-AATCGCCACTAAAAACCTT
** *
25957240 AACTTTAGCGGCGGTTGAT-T
63 AACTTTAGCGTTGCTT-ATAT
*
25957260 AAAAACGCCACTAAAACCC
1 AAAAACGCCGCTAAAACCC
25957279 CCGACCATTA
Statistics
Matches: 85, Mismatches: 11, Indels: 11
0.79 0.10 0.10
Matches are distributed among these distances:
80 1 0.01
81 9 0.11
82 56 0.66
83 18 0.21
84 1 0.01
ACGTcount: A:0.36, C:0.26, G:0.15, T:0.22
Consensus pattern (82 bp):
AAAAACGCCGCTAAAACCCAAACATTAGCGGCGCTTATCAAAGAATCGCCACTAAAAACCTTAAC
TTTAGCGTTGCTTATAT
Found at i:25957251 original size:41 final size:40
Alignment explanation
Indices: 25957083--25957277 Score: 112
Period size: 41 Copynumber: 4.8 Consensus size: 40
25957073 ATGTTTTTTT
** *
25957083 GCGGCGCTTCAACAAAAACGCCGCTAAAACCCCAACATTA
1 GCGGCGCTTCAACAAAAACGCCGCTAAAACCTTAACTTTA
* * * *
25957123 GCGGCGCTT-ATCATAGAATCGCCACTAAAAATCTTAACTTTA
1 GCGGCGCTTCAACA-A-AAACGCCGCT-AAAACCTTAACTTTA
** * * *
25957165 GCGTTGCTT-ATATAAAAACGCCGCTATAAGACC--AAATATTC
1 GCGGCGCTTCA-ACAAAAACGCCGCTA-AA-ACCTTAACT-TTA
*
25957206 GCGGCGCTTCAA-AGAAATCGCCGCTAAATACCTTAACTTTA
1 GCGGCGCTTCAACA-AAAACGCCGCTAAA-ACCTTAACTTTA
* * ** *
25957247 GCGGCGGTTGATTAAAAACGCCACTAAAACC
1 GCGGCGCTTCAACAAAAACGCCGCTAAAACC
25957278 CCCGACCATT
Statistics
Matches: 116, Mismatches: 27, Indels: 24
0.69 0.16 0.14
Matches are distributed among these distances:
39 3 0.03
40 23 0.20
41 62 0.53
42 27 0.23
43 1 0.01
ACGTcount: A:0.35, C:0.27, G:0.16, T:0.22
Consensus pattern (40 bp):
GCGGCGCTTCAACAAAAACGCCGCTAAAACCTTAACTTTA
Found at i:25957446 original size:40 final size:40
Alignment explanation
Indices: 25957402--25957497 Score: 99
Period size: 39 Copynumber: 2.4 Consensus size: 40
25957392 TTTTTTTTTG
* *
25957402 GCGGCGTTTTTGTCAAAAACGCCGCTAATGCAT-ATTTTCA
1 GCGGCGTTTTTGTCAAAAACGCCGCGAAAGC-TCATTTTCA
** *
25957442 GCGGCGCTTTTT-T-ATTAACGCCGCGAAAGCTCATTTTTA
1 GCGGCG-TTTTTGTCAAAAACGCCGCGAAAGCTCATTTTCA
25957481 GCGGCGTTTTCTGTCAA
1 GCGGCGTTTT-TGTCAA
25957498 GCGCCGCTAA
Statistics
Matches: 45, Mismatches: 6, Indels: 9
0.75 0.10 0.15
Matches are distributed among these distances:
38 5 0.11
39 26 0.58
40 8 0.18
41 6 0.13
ACGTcount: A:0.21, C:0.23, G:0.22, T:0.34
Consensus pattern (40 bp):
GCGGCGTTTTTGTCAAAAACGCCGCGAAAGCTCATTTTCA
Found at i:25957463 original size:39 final size:38
Alignment explanation
Indices: 25957419--25957508 Score: 92
Period size: 39 Copynumber: 2.3 Consensus size: 38
25957409 TTTTGTCAAA
* *
25957419 AACGCCGCTAATGCAT-ATTTTCAGCGGCGCTTTTTTATT
1 AACGCCGCTAATGC-TCATTTTCAGCGGCG-TTTTCTATC
* * * *
25957458 AACGCCGCGAAAGCTCATTTTTAGCGGCGTTTTCTGTC
1 AACGCCGCTAATGCTCATTTTCAGCGGCGTTTTCTATC
25957496 AAGCGCCGCTAAT
1 AA-CGCCGCTAAT
25957509 TCTTGAATTT
Statistics
Matches: 41, Mismatches: 8, Indels: 4
0.77 0.15 0.08
Matches are distributed among these distances:
38 9 0.22
39 32 0.78
ACGTcount: A:0.21, C:0.26, G:0.21, T:0.32
Consensus pattern (38 bp):
AACGCCGCTAATGCTCATTTTCAGCGGCGTTTTCTATC
Found at i:25960590 original size:48 final size:49
Alignment explanation
Indices: 25960510--25960634 Score: 146
Period size: 54 Copynumber: 2.5 Consensus size: 49
25960500 TTGTGGATTT
*
25960510 GGTTTAGGCACTGGTGGTGGTTGCAGT-TTTGGTTCAGAAGGCAGGTTA
1 GGTTTAGTCACTGGTGGTGGTTGCAGTATTTGGTTCAGAAGGCAGGTTA
* *
25960558 GGTTTAGTCACTGGTGGTGGTTG-AGGTATTGGTTTTGGTTCAGGAGGCGGGTTA
1 GGTTTAGTCACTGGTGGTGGTTGCA-GTA-----TTTGGTTCAGAAGGCAGGTTA
*
25960612 GGTTTAGTCACTGGTGCTGGTTG
1 GGTTTAGTCACTGGTGGTGGTTG
25960635 TGGATTTGGT
Statistics
Matches: 66, Mismatches: 4, Indels: 8
0.85 0.05 0.10
Matches are distributed among these distances:
47 1 0.02
48 24 0.36
54 41 0.62
ACGTcount: A:0.14, C:0.10, G:0.41, T:0.36
Consensus pattern (49 bp):
GGTTTAGTCACTGGTGGTGGTTGCAGTATTTGGTTCAGAAGGCAGGTTA
Found at i:25960648 original size:30 final size:30
Alignment explanation
Indices: 25960612--25960675 Score: 83
Period size: 30 Copynumber: 2.1 Consensus size: 30
25960602 AGGCGGGTTA
* * *
25960612 GGTTTAGTCACTGGTGCTGGTTGTGGATTT
1 GGTTTAGGCACTGGTGCTGGCTGCGGATTT
* *
25960642 GGTTTAGGCACTGGTGGTGGCTGCGGTTTT
1 GGTTTAGGCACTGGTGCTGGCTGCGGATTT
25960672 GGTT
1 GGTT
25960676 CAGAAGGCGG
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.08, C:0.11, G:0.41, T:0.41
Consensus pattern (30 bp):
GGTTTAGGCACTGGTGCTGGCTGCGGATTT
Found at i:25960651 original size:132 final size:126
Alignment explanation
Indices: 25960440--25960771 Score: 414
Period size: 132 Copynumber: 2.5 Consensus size: 126
25960430 GCTCCTCAGA
* * *
25960440 TGGTGGTTGCGGTTTTGGTTCTGAGGGAGGGTTAGGTTTA-GCAACTGGTGGTGGTGATGGTTGT
1 TGGTGGTTGCGGTTTTGGTTCAGAAGGCGGGTTAGGTTTAGGC-AC------TGGTGATGGTTGT
*
25960504 GGATTTGGTTTAGGCACTGGTGGTGGTTGCAGTTTTGGTTCAGAAGGCAGGTTAGGTTTAGTCAC
59 GGATTTGGTTTAGGCACTGGTGGTGGCTGCAGTTTTGGTTCAGAAGGCAGGTTAGGTTTAGTCAC
25960569 TGG
124 TGG
* * * *
25960572 TGGTGGTTGAGGTATTGGTTTTGGTTCAGGAGGCGGGTTAGGTTTAGTCACTGGTGCTGGTTGTG
1 TGGTGGTT---G---CGGTTTTGGTTCAGAAGGCGGGTTAGGTTTAGGCACTGGTGATGGTTGTG
* * *
25960637 GATTTGGTTTAGGCACTGGTGGTGGCTGCGGTTTTGGTTCAGAAGGCGGGTTAGGTTTTGTCACT
60 GATTTGGTTTAGGCACTGGTGGTGGCTGCAGTTTTGGTTCAGAAGGCAGGTTAGGTTTAGTCACT
25960702 GG
125 GG
* * *
25960704 TGGTGGTTGCGGTTTTGGTTCAGAAGGCGGGTTAGGTTTAGGCATTGGTGGTGGTTGTGGTTTTG
1 TGGTGGTTGCGGTTTTGGTTCAGAAGGCGGGTTAGGTTTAGGCACTGGTGATGGTTGTGGATTTG
25960769 GTT
66 GTT
25960772 CAGAGGGCGG
Statistics
Matches: 176, Mismatches: 17, Indels: 20
0.83 0.08 0.09
Matches are distributed among these distances:
126 53 0.30
129 1 0.01
132 92 0.52
135 1 0.01
138 28 0.16
139 1 0.01
ACGTcount: A:0.12, C:0.08, G:0.42, T:0.38
Consensus pattern (126 bp):
TGGTGGTTGCGGTTTTGGTTCAGAAGGCGGGTTAGGTTTAGGCACTGGTGATGGTTGTGGATTTG
GTTTAGGCACTGGTGGTGGCTGCAGTTTTGGTTCAGAAGGCAGGTTAGGTTTAGTCACTGG
Found at i:25960712 original size:180 final size:178
Alignment explanation
Indices: 25960510--25960892 Score: 492
Period size: 180 Copynumber: 2.1 Consensus size: 178
25960500 TTGTGGATTT
*
25960510 GGTTTAGGCACTGGTGGTGGTTGCAGTTTTGGTTCAGAAGGCAGGTTAGGTTTAGTCACTGGTGG
1 GGTTTA-GCACTGGTGGTGGTTGCAGTTTTGGTTCAGAAGGCAGGTTAGGTTTAGGCACTGGTGG
25960575 TGGTTGAGGTATTGGTTTTGGTTCAG-GAGGCGGGTTAGGTTTAGTCACTGGTGCTGG-T-T-G-
65 TGGTT---G---TGGTTTTGGTTCAGAG-GGCGGGTTAGGTTTAGTCACTGGTGCTGGTTGTGGC
*
25960635 T-GGATTTGGTTTAGGCA-CTGGTGGTGGCTGCGGTTTTGGTTCAGAAGGCGGGTTA
123 TCGGATTTGGTTTAGGAATC-GGTGGTGGCTGCGGTTTTGGTTCAGAAGGCGGGTTA
* * * *
25960690 GGTTTTGTCACTGGTGGTGGTTGCGGTTTTGGTTCAGAAGGCGGGTTAGGTTTAGGCATTGGTGG
1 GGTTTAG-CACTGGTGGTGGTTGCAGTTTTGGTTCAGAAGGCAGGTTAGGTTTAGGCACTGGTGG
* *
25960755 TGGTTGTGGTTTTGGTTCAGAGGGCGGGTTAGGTTTAGTCACTGTTGGTGGTTGTGGCTGCGGAT
65 TGGTTGTGGTTTTGGTTCAGAGGGCGGGTTAGGTTTAGTCACTGGTGCTGGTTGTGGCT-CGGAT
* * * *
25960820 TTGGTTTAGGAATCGGTGGTGGTTGTGGTTTTGGTTCAGAGGGCGGGTTC
129 TTGGTTTAGGAATCGGTGGTGGCTGCGGTTTTGGTTCAGAAGGCGGGTTA
*
25960870 GGTTTAGCTACCGGTGGTGGTTG
1 GGTTTAGC-ACTGGTGGTGGTTG
25960893 TGGTTGCGGT
Statistics
Matches: 179, Mismatches: 14, Indels: 20
0.84 0.07 0.09
Matches are distributed among these distances:
174 41 0.23
175 2 0.01
176 1 0.01
177 2 0.01
178 1 0.01
179 2 0.01
180 129 0.72
181 1 0.01
ACGTcount: A:0.11, C:0.10, G:0.42, T:0.37
Consensus pattern (178 bp):
GGTTTAGCACTGGTGGTGGTTGCAGTTTTGGTTCAGAAGGCAGGTTAGGTTTAGGCACTGGTGGT
GGTTGTGGTTTTGGTTCAGAGGGCGGGTTAGGTTTAGTCACTGGTGCTGGTTGTGGCTCGGATTT
GGTTTAGGAATCGGTGGTGGCTGCGGTTTTGGTTCAGAAGGCGGGTTA
Found at i:25960789 original size:24 final size:24
Alignment explanation
Indices: 25960666--25960790 Score: 73
Period size: 24 Copynumber: 5.2 Consensus size: 24
25960656 TGGTGGCTGC
*
25960666 GGTTTTGGTTCAGAAGGCGGGTTA
1 GGTTTTGGTTCAGAGGGCGGGTTA
** *
25960690 GGTTTT-G-TCACTGGTG-GTGGTTGC
1 GGTTTTGGTTCAGAGG-GCG-GGTT-A
*
25960714 GGTTTTGGTTCAGAAGGCGGGTTA
1 GGTTTTGGTTCAGAGGGCGGGTTA
* ** *
25960738 GGTTTAGG--CATTGGTG-GTGGTTGT
1 GGTTTTGGTTCAGAGG-GCG-GGTT-A
25960762 GGTTTTGGTTCAGAGGGCGGGTTA
1 GGTTTTGGTTCAGAGGGCGGGTTA
25960786 GGTTT
1 GGTTT
25960791 AGTCACTGTT
Statistics
Matches: 72, Mismatches: 17, Indels: 24
0.64 0.15 0.21
Matches are distributed among these distances:
22 9 0.12
23 11 0.15
24 31 0.43
25 11 0.15
26 10 0.14
ACGTcount: A:0.11, C:0.08, G:0.43, T:0.38
Consensus pattern (24 bp):
GGTTTTGGTTCAGAGGGCGGGTTA
Found at i:25960807 original size:132 final size:126
Alignment explanation
Indices: 25960440--25961030 Score: 361
Period size: 132 Copynumber: 4.6 Consensus size: 126
25960430 GCTCCTCAGA
* * * *
25960440 TGGTGGTTGCGGTTTTGGTTCTGAGGGAGGGTTAGGTTTA-GCAACTGGTGGTGGTGATGGTTGT
1 TGGTGGTTGTGGTTTTGGTTCAGAAGGCGGGTTAGGTTTAGGC-AC---TGGT-G-G-TGGTTGT
* * * * * * * *
25960504 GGATTTGGTTTAGGCACTGGTGGTGGTTGCAGTTTTGGTTCAGAAGGCAGGTTAGGTTTAGTCAC
59 GGTTTTGGTTCAGGCACGGGTGGTGGCTACGGTTGTGGTTCAGAAGGCGGGTTAGGTTTAGTCAC
25960569 TGG
124 TGG
* * *
25960572 TGGTGGTTGAGGTATTGGTTTTGGTTCAGGAGGCGGGTTAGGTTTAGTCACTGGTGCTGGTTGTG
1 TGGTGGTT---G---TGGTTTTGGTTCAGAAGGCGGGTTAGGTTTAGGCACTGGTGGTGGTTGTG
* * * * * *
25960637 GATTTGGTTTAGGCACTGGTGGTGGCTGCGGTTTTGGTTCAGAAGGCGGGTTAGGTTTTGTCACT
60 GTTTTGGTTCAGGCACGGGTGGTGGCTACGGTTGTGGTTCAGAAGGCGGGTTAGGTTTAGTCACT
25960702 GG
125 GG
* *
25960704 TGGTGGTTGCGGTTTTGGTTCAGAAGGCGGGTTAGGTTTAGGCATTGGTGGTGGTTGTGGTTTTG
1 TGGTGGTTGTGGTTTTGGTTCAGAAGGCGGGTTAGGTTTAGGCACTGGTGGTGGTTGTGGTTTTG
** * * ** *** * * * *
25960769 GTTCAGAGGGCGGGTTAGGTTTAG-TCACTGTTGGTGGTTGTGGCTGCGGATTTGGTTTAG-GAA
66 GTTCAG-GCACGGG-T-GG--TGGCT-ACGGTT-GTGGTTCAGAAGGCGGGTTAGGTTTAGTCAC
25960832 TCGG
124 T-GG
* * *
25960836 TGGTGGTTGTGGTTTTGGTTCAGAGGGCGGGTTCGGTTTA-GCTACCGGTGGTGGTTGTGGTTGC
1 TGGTGGTTGTGGTTTTGGTTCAGAAGGCGGGTTAGGTTTAGGC-A-C--TGGT-G--GTGGTTGT
* ** * *
25960900 GGTTTTGGTTCAGGCACTGGTGGTGGCTGTGGTTTTGGTTCAG-AGG-GCG--A-G-TT--T-A-
59 GGTTTTGGTTCAGGCACGGGTGGTGGCTACGGTTGTGGTTCAGAAGGCGGGTTAGGTTTAGTCAC
25960955 --G
124 TGG
* * * * *
25960956 TGGTAGTTGTGGTTTTGGTTCAGAGGGCGGATTAGGTTTAGGCACTGGTGGTAGTTGCT-GATTT
1 TGGTGGTTGTGGTTTTGGTTCAGAAGGCGGGTTAGGTTTAGGCACTGGTGGTGGTTG-TGGTTTT
25961020 GGTTCAGGCAC
65 GGTTCAGGCAC
25961031 TGGTTGCGGT
Statistics
Matches: 372, Mismatches: 61, Indels: 70
0.74 0.12 0.14
Matches are distributed among these distances:
114 21 0.06
116 1 0.00
117 4 0.01
119 1 0.00
120 39 0.10
121 2 0.01
124 1 0.00
126 57 0.15
127 5 0.01
128 1 0.00
129 3 0.01
130 2 0.01
131 11 0.03
132 151 0.41
133 5 0.01
134 2 0.01
135 11 0.03
136 2 0.01
137 4 0.01
138 48 0.13
139 1 0.00
ACGTcount: A:0.12, C:0.09, G:0.42, T:0.37
Consensus pattern (126 bp):
TGGTGGTTGTGGTTTTGGTTCAGAAGGCGGGTTAGGTTTAGGCACTGGTGGTGGTTGTGGTTTTG
GTTCAGGCACGGGTGGTGGCTACGGTTGTGGTTCAGAAGGCGGGTTAGGTTTAGTCACTGG
Found at i:25960811 original size:48 final size:48
Alignment explanation
Indices: 25960642--25960808 Score: 262
Period size: 48 Copynumber: 3.5 Consensus size: 48
25960632 TTGTGGATTT
*
25960642 GGTTTAGGCACTGGTGGTGGCTGCGGTTTTGGTTCAGAAGGCGGGTTA
1 GGTTTAGGCACTGGTGGTGGTTGCGGTTTTGGTTCAGAAGGCGGGTTA
* *
25960690 GGTTTTGTCACTGGTGGTGGTTGCGGTTTTGGTTCAGAAGGCGGGTTA
1 GGTTTAGGCACTGGTGGTGGTTGCGGTTTTGGTTCAGAAGGCGGGTTA
* * *
25960738 GGTTTAGGCATTGGTGGTGGTTGTGGTTTTGGTTCAGAGGGCGGGTTA
1 GGTTTAGGCACTGGTGGTGGTTGCGGTTTTGGTTCAGAAGGCGGGTTA
* *
25960786 GGTTTAGTCACTGTTGGTGGTTG
1 GGTTTAGGCACTGGTGGTGGTTG
25960809 TGGCTGCGGA
Statistics
Matches: 108, Mismatches: 11, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
48 108 1.00
ACGTcount: A:0.11, C:0.10, G:0.43, T:0.37
Consensus pattern (48 bp):
GGTTTAGGCACTGGTGGTGGTTGCGGTTTTGGTTCAGAAGGCGGGTTA
Found at i:25960838 original size:84 final size:84
Alignment explanation
Indices: 25960738--25960948 Score: 309
Period size: 84 Copynumber: 2.5 Consensus size: 84
25960728 AGGCGGGTTA
* * *
25960738 GGTTTAGGCATTGGTGGTGGTTGTGGTTTTGGTTCAGAGGGCGGGTTAGGTTTAG-TCACTGTTG
1 GGTTTAGGCATCGGTGGTGGTTGTGGTTTTGGTTCAGAGGGCGGGTTAGGTTTAGCT-ACCGGTG
25960802 GTGGTTGTGGCTGCGGATTT
65 GTGGTTGTGGCTGCGGATTT
* *
25960822 GGTTTAGGAATCGGTGGTGGTTGTGGTTTTGGTTCAGAGGGCGGGTTCGGTTTAGCTACCGGTGG
1 GGTTTAGGCATCGGTGGTGGTTGTGGTTTTGGTTCAGAGGGCGGGTTAGGTTTAGCTACCGGTGG
* *
25960887 TGGTTGTGGTTGCGGTTTT
66 TGGTTGTGGCTGCGGATTT
* *
25960906 GGTTCAGGCA-CTGGTGGTGGCTGTGGTTTTGGTTCAGAGGGCG
1 GGTTTAGGCATC-GGTGGTGGTTGTGGTTTTGGTTCAGAGGGCG
25960949 AGTTTAGTGG
Statistics
Matches: 115, Mismatches: 10, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
83 1 0.01
84 113 0.98
85 1 0.01
ACGTcount: A:0.09, C:0.10, G:0.44, T:0.37
Consensus pattern (84 bp):
GGTTTAGGCATCGGTGGTGGTTGTGGTTTTGGTTCAGAGGGCGGGTTAGGTTTAGCTACCGGTGG
TGGTTGTGGCTGCGGATTT
Found at i:25960975 original size:84 final size:83
Alignment explanation
Indices: 25960738--25961026 Score: 259
Period size: 84 Copynumber: 3.4 Consensus size: 83
25960728 AGGCGGGTTA
* *
25960738 GGTTTAGGCATTGGTGGTGGTTGTGGTTTTGGTTCAGAGGGCGGGTTAG-GTTTAGTCACT-GTT
1 GGTTTAGGCAATGGTGGTGGTTGTGGTTTTGGTTCAGAGGGCGGTTTAGTG-TTAGT-ACTGGTT
25960801 GGTGGTTGTGGCTGCGGATTT
64 -GTGGTTGTGGCTGCGGATTT
* * *
25960822 GGTTTAGG-AATCGGTGGTGGTTGTGGTTTTGGTTCAGAGGGCGGGTTCG-GTTTAGCTACCGGT
1 GGTTTAGGCAAT-GGTGGTGGTTGTGGTTTTGGTTCAGAGGGCGGTTTAGTG-TTAG-TACTGGT
* * *
25960885 GGTGGTTGTGGTTGCGGTTTT
63 TGTGGTTGTGGCTGCGGATTT
* * * * ** *
25960906 GGTTCAGGCACTGGTGGTGGCTGTGGTTTTGGTTCAGAGGGCGAGTTTAGTGGTAGTTGTGGTTT
1 GGTTTAGGCAATGGTGGTGGTTGTGGTTTTGGTTCAGAGGGCG-GTTTAGTGTTAGTACTGGTTG
* *
25960971 TGGTTCAGAGG--GCGGATTA
65 TGGTT--GTGGCTGCGGATTT
* * *
25960990 GGTTTAGGCACTGGTGGTAGTTGCT-GATTTGGTTCAG
1 GGTTTAGGCAATGGTGGTGGTTG-TGGTTTTGGTTCAG
25961027 GCACTGGTTG
Statistics
Matches: 172, Mismatches: 24, Indels: 18
0.80 0.11 0.08
Matches are distributed among these distances:
83 2 0.01
84 153 0.89
85 13 0.08
86 4 0.02
ACGTcount: A:0.11, C:0.09, G:0.43, T:0.37
Consensus pattern (83 bp):
GGTTTAGGCAATGGTGGTGGTTGTGGTTTTGGTTCAGAGGGCGGTTTAGTGTTAGTACTGGTTGT
GGTTGTGGCTGCGGATTT
Found at i:25963879 original size:7 final size:7
Alignment explanation
Indices: 25963867--25963898 Score: 64
Period size: 7 Copynumber: 4.6 Consensus size: 7
25963857 AAATTATGAT
25963867 AATTTAA
1 AATTTAA
25963874 AATTTAA
1 AATTTAA
25963881 AATTTAA
1 AATTTAA
25963888 AATTTAA
1 AATTTAA
25963895 AATT
1 AATT
25963899 ATTGTTTTTA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 25 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (7 bp):
AATTTAA
Found at i:25965848 original size:3 final size:3
Alignment explanation
Indices: 25965840--25965864 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
25965830 TCTCAGGCCT
25965840 ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA A
25965865 CTAAAATGTA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:25976998 original size:37 final size:39
Alignment explanation
Indices: 25976948--25977048 Score: 125
Period size: 37 Copynumber: 2.6 Consensus size: 39
25976938 AACACACCAG
**
25976948 ATTGGCACCCAGTGTCTCATCGGTTAAAT-CGAAG-TAA
1 ATTGGCACCCAGTGTCTCATCGAATAAATCCGAAGATAA
* *
25976985 ATTGGCACCCAGTGCCTCACCGAATAAATCCGAAGTAATAA
1 ATTGGCACCCAGTGTCTCATCGAATAAATCCGAAG--ATAA
*
25977026 ATTGACACCCAGTGTCTCATCGA
1 ATTGGCACCCAGTGTCTCATCGA
25977049 CTCGAAGTCG
Statistics
Matches: 53, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
37 25 0.47
38 5 0.09
41 23 0.43
ACGTcount: A:0.32, C:0.26, G:0.19, T:0.24
Consensus pattern (39 bp):
ATTGGCACCCAGTGTCTCATCGAATAAATCCGAAGATAA
Found at i:25978967 original size:3 final size:3
Alignment explanation
Indices: 25978959--25978996 Score: 76
Period size: 3 Copynumber: 12.7 Consensus size: 3
25978949 GCTTTGTTAT
25978959 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TT
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TT
25978997 ATTTTCACAC
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 35 1.00
ACGTcount: A:0.00, C:0.32, G:0.00, T:0.68
Consensus pattern (3 bp):
TTC
Found at i:25982714 original size:21 final size:21
Alignment explanation
Indices: 25982671--25982714 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 21
25982661 CTTCGTGTCC
*
25982671 TTCTTTCTTTCCCTTTTTATT
1 TTCTTTCTTTCCCTTTCTATT
* *
25982692 TTCTTTCTTTTCCTTTCTGTT
1 TTCTTTCTTTCCCTTTCTATT
25982713 TT
1 TT
25982715 GTTGTGCTTG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.02, C:0.23, G:0.02, T:0.73
Consensus pattern (21 bp):
TTCTTTCTTTCCCTTTCTATT
Found at i:25982947 original size:12 final size:12
Alignment explanation
Indices: 25982927--25982958 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
25982917 CTTTCACCCT
*
25982927 TTATACTTTTAA
1 TTATTCTTTTAA
25982939 TTATTCTTTTAA
1 TTATTCTTTTAA
25982951 TTATTCTT
1 TTATTCTT
25982959 AATTCATGCA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.25, C:0.09, G:0.00, T:0.66
Consensus pattern (12 bp):
TTATTCTTTTAA
Found at i:25987204 original size:16 final size:16
Alignment explanation
Indices: 25987176--25987209 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 16
25987166 AATGCTTCAT
25987176 TATTTATTTTTAATTA
1 TATTTATTTTTAATTA
25987192 TATTT-TTTATTAATTA
1 TATTTATTT-TTAATTA
25987208 TA
1 TA
25987210 GTGAGAATAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 3 0.18
16 14 0.82
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (16 bp):
TATTTATTTTTAATTA
Found at i:25988577 original size:33 final size:33
Alignment explanation
Indices: 25988534--25988629 Score: 122
Period size: 33 Copynumber: 2.9 Consensus size: 33
25988524 ACCCAAATGC
* *
25988534 ATGCAATCATATTAGTATATATACAAAATAC-G
1 ATGCAATCATATTAATAGATATACAAAATACAG
* * *
25988566 ATTGTAATCATATTAATAGATACACATAATACAG
1 A-TGCAATCATATTAATAGATATACAAAATACAG
*
25988600 ATGCAATCATATTAACAGATATACAAAATA
1 ATGCAATCATATTAATAGATATACAAAATA
25988630 TGGATGTAAT
Statistics
Matches: 53, Mismatches: 9, Indels: 3
0.82 0.14 0.05
Matches are distributed among these distances:
32 1 0.02
33 50 0.94
34 2 0.04
ACGTcount: A:0.49, C:0.12, G:0.08, T:0.30
Consensus pattern (33 bp):
ATGCAATCATATTAATAGATATACAAAATACAG
Found at i:25997919 original size:41 final size:40
Alignment explanation
Indices: 25997834--25998032 Score: 222
Period size: 41 Copynumber: 4.8 Consensus size: 40
25997824 CCTTTCGGGT
* * * *
25997834 CTTTAGCAGCGTTTTATTAAGAAGCGCCGCTAATGCTGTAGG
1 CTTTAGCGGCGTTTTCTGAA-AAGCGCCGCTAATGCT-TGGG
*
25997876 CTTTAGCGGCGTTTT-TGAATAAGCGCCGCTAATTCTATGGG
1 CTTTAGCGGCGTTTTCTGAA-AAGCGCCGCTAATGCT-TGGG
* *
25997917 CTTTAGCGGTGTTTT-TGTAAAAGCGCCGCTAATGCTTTGGC
1 CTTTAGCGGCGTTTTCTG-AAAAGCGCCGCTAATGC-TTGGG
* *
25997958 CTTTAGCGGCGTTTTCTGGAAAAGCACCGCTAATGCTGGGG
1 CTTTAGCGGCGTTTTCT-GAAAAGCGCCGCTAATGCTTGGG
25997999 TCTTTAGCGGCGTTTTCTGGAAAAGCGCCGCTAA
1 -CTTTAGCGGCGTTTTCT-GAAAAGCGCCGCTAA
25998033 GGACATTTTA
Statistics
Matches: 138, Mismatches: 14, Indels: 10
0.85 0.09 0.06
Matches are distributed among these distances:
41 71 0.51
42 66 0.48
43 1 0.01
ACGTcount: A:0.20, C:0.21, G:0.28, T:0.32
Consensus pattern (40 bp):
CTTTAGCGGCGTTTTCTGAAAAGCGCCGCTAATGCTTGGG
Found at i:25997972 original size:82 final size:84
Alignment explanation
Indices: 25997830--25998032 Score: 247
Period size: 83 Copynumber: 2.4 Consensus size: 84
25997820 CCTACCTTTC
* * *
25997830 GGGTCTTTAGCAGCGTTTTAT-TAAGAAGCGCCGCTAATGCTGTAGGCTTTAGCGGCGTTTT-T-
1 GGGTCTTTAGCGGCGTTTTCTGGAA-AAGCGCCGCTAATGCTGTAGGCTTTAGCGGCGTTTTCTG
* * *
25997892 GAATAAGCGCCGCTAATTCTAT
65 GAA-AAGCACCGCTAATGCT-G
* * *
25997914 GGG-CTTTAGCGGTGTTTT-TGTAAAAGCGCCGCTAATGCT-TTGGCCTTTAGCGGCGTTTTCTG
1 GGGTCTTTAGCGGCGTTTTCTGGAAAAGCGCCGCTAATGCTGTAGG-CTTTAGCGGCGTTTTCTG
25997976 GAAAAGCACCGCTAATGCTG
65 GAAAAGCACCGCTAATGCTG
25997996 GGGTCTTTAGCGGCGTTTTCTGGAAAAGCGCCGCTAA
1 GGGTCTTTAGCGGCGTTTTCTGGAAAAGCGCCGCTAA
25998033 GGACATTTTA
Statistics
Matches: 105, Mismatches: 8, Indels: 12
0.84 0.06 0.10
Matches are distributed among these distances:
81 3 0.03
82 35 0.33
83 45 0.43
84 22 0.21
ACGTcount: A:0.20, C:0.20, G:0.29, T:0.32
Consensus pattern (84 bp):
GGGTCTTTAGCGGCGTTTTCTGGAAAAGCGCCGCTAATGCTGTAGGCTTTAGCGGCGTTTTCTGG
AAAAGCACCGCTAATGCTG
Found at i:25998969 original size:21 final size:20
Alignment explanation
Indices: 25998935--25998975 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 20
25998925 TTAGGGACTA
*
25998935 GGGATTATGGTTTAAGGGTT
1 GGGATTAAGGTTTAAGGGTT
*
25998955 GGGATTTAAGGTTTAGGGGTT
1 GGGA-TTAAGGTTTAAGGGTT
25998976 AGGGGTTAGA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.20, C:0.00, G:0.41, T:0.39
Consensus pattern (20 bp):
GGGATTAAGGTTTAAGGGTT
Found at i:26000144 original size:83 final size:82
Alignment explanation
Indices: 25999956--26000177 Score: 216
Period size: 83 Copynumber: 2.7 Consensus size: 82
25999946 GTGTAATCTA
* * * * *
25999956 TTAGTGGCGTTTATGCTAAAAACGCCACAATGATGTATTAATGTTT-TTCAAAACGTCACTGTTT
1 TTAGTGGCGTTTTTGCTAAAAACGCCGCAAT-ATGTATTAAAGTTTCTT-AAAACGGCACCGTTT
* *
26000020 CTCTTCAAGACTTAAAATT
64 CTATTCAAAACTTAAAATT
** * *
26000039 TTAGTGGCGTTTTT-CGGGAAAACGCCGGAACTATGGATTAAAGTTTCTTAAAACGGCACCGTTT
1 TTAGTGGCGTTTTTGC-TAAAAACGCCGCAA-TATGTATTAAAGTTTCTTAAAACGGCACCGTTT
* * *
26000103 GTATTCAATAAGTT-AATTT
64 CTATTCAA-AACTTAAAATT
* * *
26000122 TTAGTGGCGTTTTTGCTAAAAACGCCGCAAATATATATTTAAGGTTCTTAAAACGG
1 TTAGTGGCGTTTTTGCTAAAAACGCCGC-AATATGTATTAAAGTTTCTTAAAACGG
26000178 TGCTGTTTCA
Statistics
Matches: 112, Mismatches: 21, Indels: 12
0.77 0.14 0.08
Matches are distributed among these distances:
82 1 0.01
83 102 0.91
84 9 0.08
ACGTcount: A:0.31, C:0.15, G:0.18, T:0.36
Consensus pattern (82 bp):
TTAGTGGCGTTTTTGCTAAAAACGCCGCAATATGTATTAAAGTTTCTTAAAACGGCACCGTTTCT
ATTCAAAACTTAAAATT
Found at i:26000171 original size:450 final size:451
Alignment explanation
Indices: 25999309--26000207 Score: 1568
Period size: 450 Copynumber: 2.0 Consensus size: 451
25999299 TTTGGATATA
* *
25999309 TAGGACCACATTATAAGAAATAAAAAACATTAGCGGCGTTTGGGTAGAAACGCCGCAACTATGTA
1 TAGGACCACATTATAAGAAATAAAAAACATTAGCGGCGTTTGGGAAAAAACGCCGCAACTATGTA
*
25999374 CCCATTTTTTTCAAAACGACGTCGTATCCATTTAGAAATTTAATTTAATTTGTGGCGTTTTTTGG
66 CCCATTTTTTTCAAAACGACGTCGTATCCATTTAGAAATTTAATTTAATTTGTGGCGTTTTCTGG
25999439 GAAAACGCCATAAATATGTATTATAATTTCTCAAAACGGCACCGTTTCAGAAGAGGAGTGTAATA
131 GAAAACGCCATAAATATGTATTATAATTTCTCAAAACGGCACCGTTTCAGAAGAGGAGTGTAATA
* *
25999504 TATTAGTGGCGTTTAAGCTAAAAACGCCGCATTGATGTATTAATGTTTTTCAAAACGTCACTGTT
196 TATTAGTGGCGTTTAAGCTAAAAACGCCACAATGATGTATTAATGTTTTTCAAAACGTCACTGTT
* *
25999569 TCTCTTCAGGACTTGAAATTTTAGTGGCGTTTTTCGGGAAAACACCGGAACTATGGATTAAAGTT
261 TCTCTTCAAGACTTAAAATTTTAGTGGCGTTTTTCGGGAAAACACCGGAACTATGGATTAAAGTT
*
25999634 TCTTAAAACGACACCGTTTCTATTCAGTAAGTTAATTCTTAGTGGCGTTTTTGCGTAAAACGCCG
326 TCTTAAAACGACACCGTTTCTATTCAATAAGTTAATTCTTAGTGGCGTTTTTGCGTAAAACGCCG
* *
25999699 TAAATATATATTGAAGGTTCTTAAAACGGTGCTGTTTTAGAATTTAATTTTGGCAATTACG
391 CAAATATATATTGAAGGTTCTTAAAACGGTGCTGTTTCAGAATTTAATTTTGGCAATTACG
* * * *
25999760 TAGGACCACATTATAAGGAA-AAAAAACATTAGCGGCGTTTGGGAAAAAATGCCGCAACTATTTT
1 TAGGACCACATTATAAGAAATAAAAAACATTAGCGGCGTTTGGGAAAAAACGCCGCAACTATGTA
*
25999824 CCCATTTTTTTCAAAACGGCGTCGTATCCATTTAGAAATTTAATTTAATTTGTGGCGTTTTCTGG
66 CCCATTTTTTTCAAAACGACGTCGTATCCATTTAGAAATTTAATTTAATTTGTGGCGTTTTCTGG
* *
25999889 GAAAATGCCATAAATATGTATTATAATTTCTCAAAACGGCACCGTTTCAGAAGAGGAGTGTAATC
131 GAAAACGCCATAAATATGTATTATAATTTCTCAAAACGGCACCGTTTCAGAAGAGGAGTGTAATA
*
25999954 TATTAGTGGCGTTTATGCTAAAAACGCCACAATGATGTATTAATGTTTTTCAAAACGTCACTGTT
196 TATTAGTGGCGTTTAAGCTAAAAACGCCACAATGATGTATTAATGTTTTTCAAAACGTCACTGTT
*
26000019 TCTCTTCAAGACTTAAAATTTTAGTGGCGTTTTTCGGGAAAACGCCGGAACTATGGATTAAAGTT
261 TCTCTTCAAGACTTAAAATTTTAGTGGCGTTTTTCGGGAAAACACCGGAACTATGGATTAAAGTT
* * *
26000084 TCTTAAAACGGCACCGTTTGTATTCAATAAGTTAATTTTTAGTGGCGTTTTTGC-TAAAAACGCC
326 TCTTAAAACGACACCGTTTCTATTCAATAAGTTAATTCTTAGTGGCGTTTTTGCGT-AAAACGCC
*
26000148 GCAAATATATATTTAAGGTTCTTAAAACGGTGCTGTTTCAGAATTTAATTTTGGCAATTA
390 GCAAATATATATTGAAGGTTCTTAAAACGGTGCTGTTTCAGAATTTAATTTTGGCAATTA
26000208 TGGAAGCAAT
Statistics
Matches: 424, Mismatches: 23, Indels: 3
0.94 0.05 0.01
Matches are distributed among these distances:
449 1 0.00
450 404 0.95
451 19 0.04
ACGTcount: A:0.32, C:0.15, G:0.19, T:0.34
Consensus pattern (451 bp):
TAGGACCACATTATAAGAAATAAAAAACATTAGCGGCGTTTGGGAAAAAACGCCGCAACTATGTA
CCCATTTTTTTCAAAACGACGTCGTATCCATTTAGAAATTTAATTTAATTTGTGGCGTTTTCTGG
GAAAACGCCATAAATATGTATTATAATTTCTCAAAACGGCACCGTTTCAGAAGAGGAGTGTAATA
TATTAGTGGCGTTTAAGCTAAAAACGCCACAATGATGTATTAATGTTTTTCAAAACGTCACTGTT
TCTCTTCAAGACTTAAAATTTTAGTGGCGTTTTTCGGGAAAACACCGGAACTATGGATTAAAGTT
TCTTAAAACGACACCGTTTCTATTCAATAAGTTAATTCTTAGTGGCGTTTTTGCGTAAAACGCCG
CAAATATATATTGAAGGTTCTTAAAACGGTGCTGTTTCAGAATTTAATTTTGGCAATTACG
Found at i:26001206 original size:12 final size:12
Alignment explanation
Indices: 26001184--26001217 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
26001174 TAATTATTGG
26001184 GTTTGGTTTTCTA
1 GTTT-GTTTTCTA
26001197 GTTTGTTTTCTA
1 GTTTGTTTTCTA
*
26001209 GTCTGTTTT
1 GTTTGTTTT
26001218 GCGAGATTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
12 16 0.80
13 4 0.20
ACGTcount: A:0.06, C:0.09, G:0.21, T:0.65
Consensus pattern (12 bp):
GTTTGTTTTCTA
Found at i:26001236 original size:7 final size:7
Alignment explanation
Indices: 26001224--26001248 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
26001214 TTTTGCGAGA
26001224 TTTTCTG
1 TTTTCTG
26001231 TTTTCTG
1 TTTTCTG
26001238 TTTTCTG
1 TTTTCTG
26001245 TTTT
1 TTTT
26001249 GCAAATAGTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.00, C:0.12, G:0.12, T:0.76
Consensus pattern (7 bp):
TTTTCTG
Found at i:26002477 original size:9 final size:9
Alignment explanation
Indices: 26002459--26002678 Score: 146
Period size: 9 Copynumber: 25.8 Consensus size: 9
26002449 CTTATATATA
*
26002459 AACTTGCAT
1 AACTTACAT
26002468 AACTTACAT
1 AACTTACAT
*
26002477 AA-TAACATAAT
1 AACTTAC---AT
26002488 AACTTACAT
1 AACTTACAT
26002497 AA--TACAT
1 AACTTACAT
* *
26002504 AGCCTACAT
1 AACTTACAT
26002513 AACTTACAT
1 AACTTACAT
*
26002522 AA--TACAC
1 AACTTACAT
26002529 AACTTACAT
1 AACTTACAT
*
26002538 AACTTAAAT
1 AACTTACAT
26002547 AACTTACAT
1 AACTTACAT
26002556 AA--TACAT
1 AACTTACAT
**
26002563 AACTTTGAT
1 AACTTACAT
*
26002572 AACTAACAT
1 AACTTACAT
* *
26002581 TA--TACAC
1 AACTTACAT
26002588 AACTTACAT
1 AACTTACAT
26002597 AA--TACAT
1 AACTTACAT
* *
26002604 TACTTACTT
1 AACTTACAT
*
26002613 AACATACAT
1 AACTTACAT
* *
26002622 AGCCTACAT
1 AACTTACAT
26002631 AACTTACAT
1 AACTTACAT
*
26002640 AA--TACAC
1 AACTTACAT
26002647 AACTTACAT
1 AACTTACAT
*
26002656 AGCTTACAT
1 AACTTACAT
26002665 AA--TACAT
1 AACTTACAT
26002672 AACTTAC
1 AACTTAC
26002679 CCGTGCAATT
Statistics
Matches: 160, Mismatches: 33, Indels: 36
0.70 0.14 0.16
Matches are distributed among these distances:
7 42 0.26
8 3 0.02
9 108 0.68
11 4 0.03
12 3 0.02
ACGTcount: A:0.46, C:0.21, G:0.02, T:0.30
Consensus pattern (9 bp):
AACTTACAT
Found at i:26002491 original size:20 final size:19
Alignment explanation
Indices: 26002466--26002564 Score: 73
Period size: 20 Copynumber: 5.1 Consensus size: 19
26002456 ATAAACTTGC
26002466 ATAACTTACATAATAACATA
1 ATAACTTACATAAT-ACATA
26002486 ATAACTTACATAATACATAGCCTA
1 ATAACTTACATAATAC--A---TA
26002510 CATAACTTACATAATAC---
1 -ATAACTTACATAATACATA
* *
26002527 ACAACTTACAT-A-ACTTAA
1 ATAACTTACATAATACAT-A
26002545 ATAACTTACATAATACATA
1 ATAACTTACATAATACATA
26002564 A
1 A
26002565 CTTTGATAAC
Statistics
Matches: 64, Mismatches: 3, Indels: 25
0.70 0.03 0.27
Matches are distributed among these distances:
14 2 0.03
15 1 0.02
16 10 0.16
18 10 0.16
19 5 0.08
20 17 0.27
21 1 0.02
24 2 0.03
25 16 0.25
ACGTcount: A:0.51, C:0.19, G:0.01, T:0.29
Consensus pattern (19 bp):
ATAACTTACATAATACATA
Found at i:26002516 original size:25 final size:23
Alignment explanation
Indices: 26002465--26002672 Score: 137
Period size: 25 Copynumber: 8.9 Consensus size: 23
26002455 TATAAACTTG
*
26002465 CATAACTTACATAATA-ACA-TA
1 CATAACTTACATAATACATACTA
26002486 -ATAACTTACATAATACATAGCCTA
1 CATAACTTACATAATACATA--CTA
*
26002510 CATAACTTACATAATACACAACTTA
1 CATAACTTACATAATACA-TAC-TA
* *
26002535 CATAACTTAAATAACTTACATAATA
1 CATAACTTACATAA--TACATACTA
**
26002560 CATAACTTTGATAACTAACATTA-TA
1 CATAACTTACATAA-T-ACA-TACTA
*
26002585 CACAACTTACATAATACAT--TA
1 CATAACTTACATAATACATACTA
* *
26002606 C-TTACTTA-A-CATACATAGCCTA
1 CATAACTTACATAATACATA--CTA
*
26002628 CATAACTTACATAATACACAACTTA
1 CATAACTTACATAATACA-TAC-TA
*
26002653 CATAGCTTACATAATACATA
1 CATAACTTACATAATACATA
26002673 ACTTACCCGT
Statistics
Matches: 148, Mismatches: 19, Indels: 37
0.73 0.09 0.18
Matches are distributed among these distances:
18 6 0.04
19 1 0.01
20 20 0.14
21 5 0.03
22 4 0.03
23 9 0.06
24 8 0.05
25 86 0.58
26 5 0.03
27 4 0.03
ACGTcount: A:0.47, C:0.21, G:0.02, T:0.30
Consensus pattern (23 bp):
CATAACTTACATAATACATACTA
Found at i:26002549 original size:34 final size:34
Alignment explanation
Indices: 26002511--26002678 Score: 133
Period size: 34 Copynumber: 4.7 Consensus size: 34
26002501 CATAGCCTAC
*
26002511 ATAACTTACATAATACACAACTTACATAACTTAA
1 ATAACTTACATAATACATAACTTACATAACTTAA
*
26002545 ATAACTTACATAATACATAACTTTGATAACTAACATTATA
1 ATAACTTACATAATACATAAC-TT-A-CA-TAAC-TTA-A
* * * * *
26002585 CACAACTTACATAATACATTACTTACTTAACATAC
1 -ATAACTTACATAATACATAACTTACATAACTTAA
* * * *
26002620 ATAGCCTACATAACTTACATAA--TACACAACTTAC
1 ATAACTTACATAA--TACATAACTTACATAACTTAA
*
26002654 ATAGCTTACATAATACATAACTTAC
1 ATAACTTACATAATACATAACTTAC
26002679 CCGTGCAATT
Statistics
Matches: 107, Mismatches: 16, Indels: 22
0.74 0.11 0.15
Matches are distributed among these distances:
32 7 0.07
34 54 0.50
35 2 0.02
36 9 0.08
37 5 0.05
38 4 0.04
39 4 0.04
40 3 0.03
41 19 0.18
ACGTcount: A:0.46, C:0.21, G:0.02, T:0.31
Consensus pattern (34 bp):
ATAACTTACATAATACATAACTTACATAACTTAA
Found at i:26002555 original size:59 final size:59
Alignment explanation
Indices: 26002485--26002673 Score: 233
Period size: 59 Copynumber: 3.2 Consensus size: 59
26002475 ATAATAACAT
26002485 AATAACTTACATAATACATAGCCTACATAACTTACATAATACACAACTTACATAACTTA
1 AATAACTTACATAATACATAGCCTACATAACTTACATAATACACAACTTACATAACTTA
* * ** * *
26002544 AATAACTTACATAATACATAACTTTGATAACTAACATTATACACAACTTACATAA--TA
1 AATAACTTACATAATACATAGCCTACATAACTTACATAATACACAACTTACATAACTTA
* * * *
26002601 CATTACTTACTTAACATACATAGCCTACATAACTTACATAATACACAACTTACATAGCTTA
1 AATAACTTACAT-A-ATACATAGCCTACATAACTTACATAATACACAACTTACATAACTTA
*
26002662 CATAA--TACATAA
1 AATAACTTACATAA
26002674 CTTACCCGTG
Statistics
Matches: 108, Mismatches: 18, Indels: 10
0.79 0.13 0.07
Matches are distributed among these distances:
57 12 0.11
58 2 0.02
59 88 0.81
61 6 0.06
ACGTcount: A:0.47, C:0.21, G:0.02, T:0.30
Consensus pattern (59 bp):
AATAACTTACATAATACATAGCCTACATAACTTACATAATACACAACTTACATAACTTA
Found at i:26008280 original size:66 final size:65
Alignment explanation
Indices: 26008173--26008343 Score: 209
Period size: 66 Copynumber: 2.6 Consensus size: 65
26008163 GAGCAAATTA
* * * *
26008173 CACAACTTAAAGCGGAGGCAACATCGAGAGAAGCTGAGGTTCAA-AAAAGATATGAAGAACTCCA
1 CACAACTTAAAGCAGATGCAGCAACGAGAGAAGCTGAGGTTCAACAAAAG-TATGAAGAACTCCA
26008237 G
65 G
* * *
26008238 CTACAACTTAAAGTAGATGCAGCAGCGAGAGAAGCTGAGGTTCAACGAAAGTATGAAGAACTCCA
1 C-ACAACTTAAAGCAGATGCAGCAACGAGAGAAGCTGAGGTTCAACAAAAGTATGAAGAACTCCA
26008303 G
65 G
* * * *
26008304 CAGCAGCTTAAAGCAGATGCGGTAACGAGAGAAGCAGAGG
1 CA-CAACTTAAAGCAGATGCAGCAACGAGAGAAGCTGAGG
26008344 CTGCAGCGAG
Statistics
Matches: 91, Mismatches: 12, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
65 2 0.02
66 85 0.93
67 4 0.04
ACGTcount: A:0.40, C:0.18, G:0.27, T:0.14
Consensus pattern (65 bp):
CACAACTTAAAGCAGATGCAGCAACGAGAGAAGCTGAGGTTCAACAAAAGTATGAAGAACTCCAG
Found at i:26008353 original size:21 final size:21
Alignment explanation
Indices: 26008329--26008405 Score: 118
Period size: 21 Copynumber: 3.7 Consensus size: 21
26008319 GATGCGGTAA
*
26008329 CGAGAGAAGCAGAGGCTGCAG
1 CGAGGGAAGCAGAGGCTGCAG
* *
26008350 CGAGGGAAGCAGAGGCTACAA
1 CGAGGGAAGCAGAGGCTGCAG
*
26008371 CGAGGGAAGTAGAGGCTGCAG
1 CGAGGGAAGCAGAGGCTGCAG
26008392 CGAGGGAAGCAGAG
1 CGAGGGAAGCAGAG
26008406 CAGCGTAAAA
Statistics
Matches: 49, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 49 1.00
ACGTcount: A:0.34, C:0.17, G:0.44, T:0.05
Consensus pattern (21 bp):
CGAGGGAAGCAGAGGCTGCAG
Found at i:26008829 original size:43 final size:43
Alignment explanation
Indices: 26008782--26009154 Score: 371
Period size: 43 Copynumber: 8.7 Consensus size: 43
26008772 GATAAGAGCA
* * *
26008782 TTTAGCGGCGTCTGTAGAGAAAGCGCCGCTAAAGATAATGGTC
1 TTTAGCGGCGTTTGTGGAGAAAGCGCCGCTAAAGATCATGGTC
* *
26008825 TTTAGCGGCGTTTGTGGAGAAAGTGCCGCTAAAGATAATGGTC
1 TTTAGCGGCGTTTGTGGAGAAAGCGCCGCTAAAGATCATGGTC
* * * *
26008868 TTTCGCGGCGTTTGTGGATAAAGCGCCGCTAAAGATAAGGGTC
1 TTTAGCGGCGTTTGTGGAGAAAGCGCCGCTAAAGATCATGGTC
* *
26008911 TTTAGCGACGTTTGTGGAGAAAGCGCCGCAAAAGATCA-GGTTC
1 TTTAGCGGCGTTTGTGGAGAAAGCGCCGCTAAAGATCATGG-TC
* * * * *
26008954 TTTAGTGGCGTTTGTGGTGGAAGCGCCGCTATAGATCAGGGTC
1 TTTAGCGGCGTTTGTGGAGAAAGCGCCGCTAAAGATCATGGTC
* * * *
26008997 TTTTGCGGCGTTTGTGG-GAAAAGCGCCGCTAAAGACCCTGATC
1 TTTAGCGGCGTTTGTGGAG-AAAGCGCCGCTAAAGATCATGGTC
* * * * * * *
26009040 TTTAGCGGTGCTT-T-AACGAAAACGCCGCTAAAGACCCTGATC
1 TTTAGCGGCGTTTGTGGA-GAAAGCGCCGCTAAAGATCATGGTC
* * * *
26009082 TTTAGCGGCGTTTGTTGTG-AAGCGCCGCTAAAGGTCTTGGTC
1 TTTAGCGGCGTTTGTGGAGAAAGCGCCGCTAAAGATCATGGTC
* *
26009124 TTCAGTGGCGTTTGTGCGAG-AAGCGCCGCTA
1 TTTAGCGGCGTTTGTG-GAGAAAGCGCCGCTA
26009155 TAGACCAACA
Statistics
Matches: 278, Mismatches: 44, Indels: 16
0.82 0.13 0.05
Matches are distributed among these distances:
42 69 0.25
43 207 0.74
44 2 0.01
ACGTcount: A:0.23, C:0.20, G:0.31, T:0.27
Consensus pattern (43 bp):
TTTAGCGGCGTTTGTGGAGAAAGCGCCGCTAAAGATCATGGTC
Found at i:26010057 original size:33 final size:33
Alignment explanation
Indices: 26010020--26010086 Score: 125
Period size: 33 Copynumber: 2.0 Consensus size: 33
26010010 TTATATACAT
26010020 CACATCCTAAAATTTAATTTCATCTTGAAACAA
1 CACATCCTAAAATTTAATTTCATCTTGAAACAA
*
26010053 CACATCCTAAAATTTAGTTTCATCTTGAAACAA
1 CACATCCTAAAATTTAATTTCATCTTGAAACAA
26010086 C
1 C
26010087 GCGACCACCA
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.40, C:0.22, G:0.04, T:0.33
Consensus pattern (33 bp):
CACATCCTAAAATTTAATTTCATCTTGAAACAA
Found at i:26013115 original size:31 final size:30
Alignment explanation
Indices: 26013080--26013153 Score: 80
Period size: 30 Copynumber: 2.4 Consensus size: 30
26013070 AAAAATTATT
*
26013080 ATTTTAGTCACTCCTA-TTAGATA-AGTTGTCA
1 ATTTTAGTCACTCC-AGTTA-ATACA-TTATCA
*
26013111 ATTTTAGTTACTCCAGTTAATACATTATCA
1 ATTTTAGTCACTCCAGTTAATACATTATCA
*
26013141 ATTTTAATCACTC
1 ATTTTAGTCACTC
26013154 TACCGTTATA
Statistics
Matches: 37, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
30 20 0.54
31 17 0.46
ACGTcount: A:0.31, C:0.18, G:0.08, T:0.43
Consensus pattern (30 bp):
ATTTTAGTCACTCCAGTTAATACATTATCA
Found at i:26014473 original size:21 final size:21
Alignment explanation
Indices: 26014449--26014491 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 21
26014439 TCCAATTTTC
*
26014449 AATTCATTGTA-TTTTATATTG
1 AATTCATTCTAGTTTTA-ATTG
*
26014470 AATTTATTCTAGTTTTAATTG
1 AATTCATTCTAGTTTTAATTG
26014491 A
1 A
26014492 TCGAACATGT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
21 14 0.74
22 5 0.26
ACGTcount: A:0.30, C:0.05, G:0.09, T:0.56
Consensus pattern (21 bp):
AATTCATTCTAGTTTTAATTG
Found at i:26024794 original size:13 final size:14
Alignment explanation
Indices: 26024771--26024799 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
26024761 ACAAGCATCC
26024771 AAGTCCCTTTGAAT
1 AAGTCCCTTTGAAT
26024785 AAGT-CCTTTGAAT
1 AAGTCCCTTTGAAT
26024798 AA
1 AA
26024800 CCTGGAGCTT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 11 0.73
14 4 0.27
ACGTcount: A:0.34, C:0.17, G:0.14, T:0.34
Consensus pattern (14 bp):
AAGTCCCTTTGAAT
Found at i:26027527 original size:27 final size:25
Alignment explanation
Indices: 26027489--26027539 Score: 75
Period size: 27 Copynumber: 2.0 Consensus size: 25
26027479 TTATGTATAT
*
26027489 AATATAAAAATTTATAACTTAAATTTG
1 AATAAAAAAATTTA-AA-TTAAATTTG
26027516 AATAAAAAAATTTAAATTAAATTT
1 AATAAAAAAATTTAAATTAAATTT
26027540 AGATGTAATT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 8 0.35
26 2 0.09
27 13 0.57
ACGTcount: A:0.57, C:0.02, G:0.02, T:0.39
Consensus pattern (25 bp):
AATAAAAAAATTTAAATTAAATTTG
Found at i:26029635 original size:24 final size:23
Alignment explanation
Indices: 26029604--26029648 Score: 56
Period size: 24 Copynumber: 1.9 Consensus size: 23
26029594 ACTAAATTAA
26029604 TAAATTTTGTA-AATTTTAAATGT
1 TAAATTTTGTAGAA-TTTAAATGT
*
26029627 TAAATTTTTTTAGAATTTAAAT
1 TAAA-TTTTGTAGAATTTAAAT
26029649 TAAAATAAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
23 4 0.21
24 13 0.68
25 2 0.11
ACGTcount: A:0.40, C:0.00, G:0.07, T:0.53
Consensus pattern (23 bp):
TAAATTTTGTAGAATTTAAATGT
Found at i:26029637 original size:17 final size:17
Alignment explanation
Indices: 26029617--26029649 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
26029607 ATTTTGTAAA
26029617 TTTTA-AATGTTAAATTT
1 TTTTAGAAT-TTAAATTT
26029634 TTTTAGAATTTAAATT
1 TTTTAGAATTTAAATT
26029650 AAAATAAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 12 0.80
18 3 0.20
ACGTcount: A:0.36, C:0.00, G:0.06, T:0.58
Consensus pattern (17 bp):
TTTTAGAATTTAAATTT
Found at i:26032153 original size:41 final size:42
Alignment explanation
Indices: 26032094--26032213 Score: 143
Period size: 41 Copynumber: 2.9 Consensus size: 42
26032084 GACTTGTGTA
* *
26032094 TACGTGTAAGACCATGTCTGGGACATTGACATTGTATTTGAT
1 TACGTGTAAGACCATGTCTGGGACATTGGCATTGTATGTGAT
* * * *
26032136 T-TGTGTAAGACCTTGTCTGGGACAGTGGCATCGATATGTGAT
1 TACGTGTAAGACCATGTCTGGGACATTGGCATTG-TATGTGAT
* * *
26032178 TACATGTAAGACCACGTCTGGGACGTTGGCATTGTA
1 TACGTGTAAGACCATGTCTGGGACATTGGCATTGTA
26032214 CGAGCCTTCC
Statistics
Matches: 63, Mismatches: 13, Indels: 4
0.79 0.16 0.05
Matches are distributed among these distances:
41 27 0.43
42 11 0.17
43 25 0.40
ACGTcount: A:0.24, C:0.16, G:0.28, T:0.33
Consensus pattern (42 bp):
TACGTGTAAGACCATGTCTGGGACATTGGCATTGTATGTGAT
Found at i:26032209 original size:43 final size:43
Alignment explanation
Indices: 26032053--26032205 Score: 154
Period size: 43 Copynumber: 3.6 Consensus size: 43
26032043 TATGTATTTT
*
26032053 CGTGTAAGACCACTTCTGGGACGTTGACATCGACT-TGTG-TATA
1 CGTGTAAGACCACGTCTGGGACGTTGACATCGA-TATGTGAT-TA
* * * *
26032096 CGTGTAAGACCATGTCTGGGACATTGACATTG-TATTTGATT-
1 CGTGTAAGACCACGTCTGGGACGTTGACATCGATATGTGATTA
* ** *
26032137 TGTGTAAGACCTTGTCTGGGACAG-TGGCATCGATATGTGATTA
1 CGTGTAAGACCACGTCTGGGAC-GTTGACATCGATATGTGATTA
*
26032180 CATGTAAGACCACGTCTGGGACGTTG
1 CGTGTAAGACCACGTCTGGGACGTTG
26032206 GCATTGTACG
Statistics
Matches: 89, Mismatches: 15, Indels: 12
0.77 0.13 0.10
Matches are distributed among these distances:
41 27 0.30
42 13 0.15
43 49 0.55
ACGTcount: A:0.24, C:0.18, G:0.27, T:0.31
Consensus pattern (43 bp):
CGTGTAAGACCACGTCTGGGACGTTGACATCGATATGTGATTA
Found at i:26032399 original size:16 final size:17
Alignment explanation
Indices: 26032370--26032401 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
26032360 TGAATTGATG
26032370 ATATGAAGTTATGTGAA
1 ATATGAAGTTATGTGAA
26032387 ATATGAA-TTATGTGA
1 ATATGAAGTTATGTGA
26032402 TTGCATATTT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 8 0.53
17 7 0.47
ACGTcount: A:0.41, C:0.00, G:0.22, T:0.38
Consensus pattern (17 bp):
ATATGAAGTTATGTGAA
Found at i:26040791 original size:50 final size:50
Alignment explanation
Indices: 26040716--26040854 Score: 251
Period size: 50 Copynumber: 2.8 Consensus size: 50
26040706 GATAATGACA
26040716 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
1 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
* *
26040766 TGCCAATGCCATGTCCTAGACATGGTCTTACATGGGACCTCTCATCTCGG
1 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
*
26040816 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACC
1 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACC
26040855 ACTTTACCCA
Statistics
Matches: 85, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
50 85 1.00
ACGTcount: A:0.22, C:0.32, G:0.22, T:0.24
Consensus pattern (50 bp):
TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
Found at i:26040973 original size:13 final size:13
Alignment explanation
Indices: 26040952--26040981 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
26040942 GCTTGGATAA
26040952 TCATCAAATAAAT
1 TCATCAAATAAAT
*
26040965 TCATGAAATAAAT
1 TCATCAAATAAAT
26040978 TCAT
1 TCAT
26040982 AGTTGCTGGA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.50, C:0.13, G:0.03, T:0.33
Consensus pattern (13 bp):
TCATCAAATAAAT
Found at i:26043015 original size:13 final size:13
Alignment explanation
Indices: 26042997--26043021 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
26042987 ATTAAAATTA
26042997 ATAAAATATTAAT
1 ATAAAATATTAAT
26043010 ATAAAATATTAA
1 ATAAAATATTAA
26043022 AATTTTTAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (13 bp):
ATAAAATATTAAT
Found at i:26043015 original size:22 final size:22
Alignment explanation
Indices: 26042989--26043033 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
26042979 TTTAAAAAAT
26042989 TAAAATTAATAAAA-TATTAATA
1 TAAAA-TAATAAAATTATTAATA
* *
26043011 TAAAATATTAAAATTTTTAATA
1 TAAAATAATAAAATTATTAATA
26043033 T
1 T
26043034 TTTTAAACAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 7 0.35
22 13 0.65
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (22 bp):
TAAAATAATAAAATTATTAATA
Found at i:26045240 original size:41 final size:40
Alignment explanation
Indices: 26045172--26045321 Score: 162
Period size: 41 Copynumber: 3.8 Consensus size: 40
26045162 AGGTAAAGCA
* *
26045172 ATAGCGACGTTTTCTCATAAACACCACAAAAGGTTAGACT
1 ATAGCGGCGTTTTCTCATAAACGCCACAAAAGGTTAGACT
* *
26045212 ATAGCGGCGTTTTTCTCATAAATGCCACAAAAGGTTAAAACT
1 ATAGCGGCG-TTTTCTCATAAACGCCACAAAAGGTT-AGACT
* * *
26045254 ATAGCGGCGTTTTCTCACAAACGCCGA-AAAAGGTAAG-CA
1 ATAGCGGCGTTTTCTCATAAACGCC-ACAAAAGGTTAGACT
* * *
26045293 ATAGTGGCATTTT-TCATAAATGCCACAAA
1 ATAGCGGCGTTTTCTCATAAACGCCACAAA
26045322 TATTTATTAA
Statistics
Matches: 93, Mismatches: 13, Indels: 10
0.80 0.11 0.09
Matches are distributed among these distances:
37 1 0.01
38 12 0.13
39 12 0.13
40 9 0.10
41 45 0.48
42 14 0.15
ACGTcount: A:0.37, C:0.21, G:0.17, T:0.25
Consensus pattern (40 bp):
ATAGCGGCGTTTTCTCATAAACGCCACAAAAGGTTAGACT
Found at i:26045285 original size:82 final size:78
Alignment explanation
Indices: 26045158--26045321 Score: 195
Period size: 82 Copynumber: 2.1 Consensus size: 78
26045148 AAAAACACTG
* * * * *
26045158 CAAAAGGTAAAGCAATAGCGACGTTTTCTCATAAACACCACAAAAGGTTAGACTATAGCGGCGTT
1 CAAAAGGTAAAACAATAGCGACGTTTTCTCACAAACACCACAAAAGGTAAG-CAATAGCGGC-AT
26045223 TTTCTCATAAATGCCA
64 TTT-TCATAAATGCCA
* * * *
26045239 CAAAAGGTTAAAACTATAGCGGCGTTTTCTCACAAACGCCGA-AAAAGGTAAGCAATAGTGGCAT
1 CAAAAGG-TAAAACAATAGCGACGTTTTCTCACAAACACC-ACAAAAGGTAAGCAATAGCGGCAT
26045303 TTTTCATAAATGCCA
64 TTTTCATAAATGCCA
26045318 CAAA
1 CAAA
26045322 TATTTATTAA
Statistics
Matches: 72, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
79 16 0.22
80 4 0.06
81 15 0.21
82 36 0.50
83 1 0.01
ACGTcount: A:0.38, C:0.20, G:0.18, T:0.24
Consensus pattern (78 bp):
CAAAAGGTAAAACAATAGCGACGTTTTCTCACAAACACCACAAAAGGTAAGCAATAGCGGCATTT
TTCATAAATGCCA
Found at i:26050353 original size:19 final size:19
Alignment explanation
Indices: 26050329--26050369 Score: 64
Period size: 19 Copynumber: 2.2 Consensus size: 19
26050319 GCCTCTATTA
*
26050329 ATGTAAATATGATTCTAGC
1 ATGTAAATATAATTCTAGC
*
26050348 ATGTAAATTTAATTCTAGC
1 ATGTAAATATAATTCTAGC
26050367 ATG
1 ATG
26050370 CACATTAGGA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.37, C:0.10, G:0.15, T:0.39
Consensus pattern (19 bp):
ATGTAAATATAATTCTAGC
Found at i:26056423 original size:29 final size:28
Alignment explanation
Indices: 26056344--26056428 Score: 75
Period size: 29 Copynumber: 3.0 Consensus size: 28
26056334 TCTAGAGTAA
*
26056344 AATTAAAAAAAAATACATTAAAATTAAA--T
1 AATT-AAAAAAAAT--ATAAAAATTAAATTT
* * **
26056373 AATTCAAACAAATATATGAATTAAATTT
1 AATTAAAAAAAATATAAAAATTAAATTT
26056401 AATTAAAATAAAATATAAAAATTAAATT
1 AATTAAAA-AAAATATAAAAATTAAATT
26056429 ACTTTCAATT
Statistics
Matches: 44, Mismatches: 9, Indels: 6
0.75 0.15 0.10
Matches are distributed among these distances:
26 9 0.20
28 15 0.34
29 20 0.45
ACGTcount: A:0.64, C:0.04, G:0.01, T:0.32
Consensus pattern (28 bp):
AATTAAAAAAAATATAAAAATTAAATTT
Found at i:26073644 original size:30 final size:29
Alignment explanation
Indices: 26073610--26073734 Score: 148
Period size: 29 Copynumber: 4.2 Consensus size: 29
26073600 TTTATTTTTG
26073610 CATTTTGACCCCTAAACTTTTCTAAAATTA
1 CATTTTGACCCCTAAAC-TTTCTAAAATTA
26073640 CATTTT-ACCCCTAAACTTTCTCAAAATTA
1 CATTTTGACCCCTAAACTTTCT-AAAATTA
*
26073669 CATTTCT-ACCCCTAAAATTTTCT-AAATTA
1 CATTT-TGACCCCT-AAACTTTCTAAAATTA
* * *
26073698 CATTTGGGCCCTTAAACTTTCTATAAATTA
1 CATTTTGACCCCTAAACTTTCTA-AAATTA
26073728 CATTTTG
1 CATTTTG
26073735 GCCATTTCTT
Statistics
Matches: 83, Mismatches: 6, Indels: 12
0.82 0.06 0.12
Matches are distributed among these distances:
28 13 0.16
29 37 0.45
30 25 0.30
31 8 0.10
ACGTcount: A:0.32, C:0.23, G:0.04, T:0.41
Consensus pattern (29 bp):
CATTTTGACCCCTAAACTTTCTAAAATTA
Found at i:26073680 original size:59 final size:59
Alignment explanation
Indices: 26073617--26073732 Score: 164
Period size: 59 Copynumber: 2.0 Consensus size: 59
26073607 TTGCATTTTG
* *
26073617 ACCCCTAAACTTTTCTAAAATTACATTT-TACCCCTAAACTTTCTCA-AAATTACATTTCT
1 ACCCCTAAAATTTTCT-AAATTACATTTGGACCCCTAAACTTTCT-ATAAATTACATTTCT
* *
26073676 ACCCCTAAAATTTTCTAAATTACATTTGGGCCCTTAAACTTTCTATAAATTACATTT
1 ACCCCTAAAATTTTCTAAATTACATTTGGACCCCTAAACTTTCTATAAATTACATTT
26073733 TGGCCATTTC
Statistics
Matches: 51, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
58 12 0.24
59 39 0.76
ACGTcount: A:0.34, C:0.24, G:0.03, T:0.40
Consensus pattern (59 bp):
ACCCCTAAAATTTTCTAAATTACATTTGGACCCCTAAACTTTCTATAAATTACATTTCT
Found at i:26073984 original size:12 final size:12
Alignment explanation
Indices: 26073958--26074013 Score: 53
Period size: 11 Copynumber: 4.6 Consensus size: 12
26073948 AGCAAGAAGC
*
26073958 AAAAAAGA-AAA
1 AAAAAAGAGCAA
26073969 AAAAAATTGAGCAA
1 AAAAAA--GAGCAA
26073983 AAAAAAGAGC-A
1 AAAAAAGAGCAA
*
26073994 AAAACAGCAGCAA
1 AAAAAAG-AGCAA
26074007 AAAAAAG
1 AAAAAAG
26074014 GCATACCGCC
Statistics
Matches: 37, Mismatches: 3, Indels: 8
0.77 0.06 0.17
Matches are distributed among these distances:
11 13 0.35
12 7 0.19
13 9 0.24
14 8 0.22
ACGTcount: A:0.73, C:0.09, G:0.14, T:0.04
Consensus pattern (12 bp):
AAAAAAGAGCAA
Found at i:26074145 original size:15 final size:15
Alignment explanation
Indices: 26074100--26074148 Score: 57
Period size: 15 Copynumber: 3.2 Consensus size: 15
26074090 AAAAAGCAAA
26074100 AAAAAAGAGAAAGA-
1 AAAAAAGAGAAAGAG
26074114 AACAACAAGCA-AAAGAG
1 AA-AA-AAG-AGAAAGAG
26074131 AAAAAAGAGAAAGAG
1 AAAAAAGAGAAAGAG
26074146 AAA
1 AAA
26074149 GAGAAAAGAA
Statistics
Matches: 30, Mismatches: 0, Indels: 9
0.77 0.00 0.23
Matches are distributed among these distances:
14 3 0.10
15 14 0.47
16 10 0.33
17 3 0.10
ACGTcount: A:0.73, C:0.06, G:0.20, T:0.00
Consensus pattern (15 bp):
AAAAAAGAGAAAGAG
Found at i:26074151 original size:21 final size:20
Alignment explanation
Indices: 26074125--26074164 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 20
26074115 ACAACAAGCA
26074125 AAAGAGAAAAAAGAGAAAGAG
1 AAAGAGAAAAAA-AGAAAGAG
*
26074146 AAAGAGAAAAGAAGAAAGA
1 AAAGAGAAAAAAAGAAAGA
26074165 TGGGGAAAGA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 7 0.39
21 11 0.61
ACGTcount: A:0.72, C:0.00, G:0.28, T:0.00
Consensus pattern (20 bp):
AAAGAGAAAAAAAGAAAGAG
Found at i:26074272 original size:4 final size:4
Alignment explanation
Indices: 26074263--26074347 Score: 74
Period size: 4 Copynumber: 22.0 Consensus size: 4
26074253 GGCTGATTGG
*
26074263 GAAA GAAA GAAA -AAA GAGA GAAAA GAGAA GAAA GAAA GAAA GAAA -AAA
1 GAAA GAAA GAAA GAAA GAAA G-AAA GA-AA GAAA GAAA GAAA GAAA GAAA
* *
26074311 G-AA -AAA GAAA G-AA G-AA GGAA GAAGA AAAA GAAA GAAA
1 GAAA GAAA GAAA GAAA GAAA GAAA GAA-A GAAA GAAA GAAA
26074348 AAAATAAAAA
Statistics
Matches: 68, Mismatches: 5, Indels: 16
0.76 0.06 0.18
Matches are distributed among these distances:
3 16 0.24
4 42 0.62
5 10 0.15
ACGTcount: A:0.74, C:0.00, G:0.26, T:0.00
Consensus pattern (4 bp):
GAAA
Found at i:26074297 original size:29 final size:28
Alignment explanation
Indices: 26074263--26074319 Score: 80
Period size: 29 Copynumber: 2.0 Consensus size: 28
26074253 GGCTGATTGG
*
26074263 GAAAGAAAGAAA-AAAGAGAGAAAAGAGAA
1 GAAAGAAAGAAAGAAA-AAAGAAAA-AGAA
26074292 GAAAGAAAGAAAGAAAAAAGAAAAAGAA
1 GAAAGAAAGAAAGAAAAAAGAAAAAGAA
26074320 AGAAGAAGGA
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
28 4 0.15
29 19 0.73
30 3 0.12
ACGTcount: A:0.75, C:0.00, G:0.25, T:0.00
Consensus pattern (28 bp):
GAAAGAAAGAAAGAAAAAAGAAAAAGAA
Found at i:26074322 original size:29 final size:28
Alignment explanation
Indices: 26074263--26074347 Score: 84
Period size: 27 Copynumber: 2.9 Consensus size: 28
26074253 GGCTGATTGG
26074263 GAAAGAAAGAAAAAAGAGAGAAAAGAGAAGAAA
1 GAAAGAAAG-AAAAA-AGA-AAAAGA-AAG-AA
26074296 GAAAGAAAGAAAAAAGAAAAAGAAAGAA
1 GAAAGAAAGAAAAAAGAAAAAGAAAGAA
* *
26074324 G-AAGGAAGAAGAAAA-AGAAAGAAA
1 GAAAGAAAGAA-AAAAGAAAAAGAAA
26074348 AAAATAAAAA
Statistics
Matches: 49, Mismatches: 2, Indels: 8
0.83 0.03 0.14
Matches are distributed among these distances:
27 16 0.33
28 7 0.14
29 3 0.06
30 6 0.12
31 3 0.06
32 5 0.10
33 9 0.18
ACGTcount: A:0.74, C:0.00, G:0.26, T:0.00
Consensus pattern (28 bp):
GAAAGAAAGAAAAAAGAAAAAGAAAGAA
Found at i:26074341 original size:44 final size:43
Alignment explanation
Indices: 26074264--26074351 Score: 110
Period size: 44 Copynumber: 2.0 Consensus size: 43
26074254 GCTGATTGGG
26074264 AAAGAAAGAAAAAAGAGAGAAAAGAGAAGAAAGAAAGAAAGAAA
1 AAAGAAAGAAAAAAGAGAGAAAAGAGAAGAAAGAAAGAAA-AAA
*
26074308 AAAGAAA-AAGAAAGA-AGAAGGAAGAAGAA-AAAGAAAGAAAAAA
1 AAAGAAAGAAAAAAGAGAGAA--AAG-AGAAGAAAGAAAGAAAAAA
26074351 A
1 A
26074352 TAAAAAATTT
Statistics
Matches: 40, Mismatches: 1, Indels: 7
0.83 0.02 0.15
Matches are distributed among these distances:
42 4 0.10
43 11 0.28
44 21 0.52
45 4 0.10
ACGTcount: A:0.76, C:0.00, G:0.24, T:0.00
Consensus pattern (43 bp):
AAAGAAAGAAAAAAGAGAGAAAAGAGAAGAAAGAAAGAAAAAA
Found at i:26074645 original size:11 final size:10
Alignment explanation
Indices: 26074631--26074689 Score: 54
Period size: 9 Copynumber: 6.1 Consensus size: 10
26074621 CCAGAAAAAA
26074631 AAAAAGAGAAG
1 AAAAA-AGAAG
26074642 AAAAACAG-AG
1 AAAAA-AGAAG
26074652 AAAAAA-AAG
1 AAAAAAGAAG
26074661 AAAAAAGAA-
1 AAAAAAGAAG
* *
26074670 AAAAGAGAAC
1 AAAAAAGAAG
26074680 AAAAAA-AAG
1 AAAAAAGAAG
26074689 A
1 A
26074690 GGTTCAATTT
Statistics
Matches: 41, Mismatches: 4, Indels: 8
0.77 0.08 0.15
Matches are distributed among these distances:
9 20 0.49
10 14 0.34
11 7 0.17
ACGTcount: A:0.80, C:0.03, G:0.17, T:0.00
Consensus pattern (10 bp):
AAAAAAGAAG
Found at i:26074650 original size:25 final size:26
Alignment explanation
Indices: 26074622--26074690 Score: 90
Period size: 26 Copynumber: 2.7 Consensus size: 26
26074612 AGAAGCAGGC
26074622 CAGA-AAAAAAAAAAGAGAAGAAAAA
1 CAGAGAAAAAAAAAAGAGAAGAAAAA
*
26074647 CAGAGAAAAAAAAGAA-AAAAGAAAAA
1 CAGAGAAAAAAAA-AAGAGAAGAAAAA
26074673 -AGAGAACAAAAAAAAGAG
1 CAGAGAA-AAAAAAAAGAG
26074691 GTTCAATTTG
Statistics
Matches: 38, Mismatches: 2, Indels: 7
0.81 0.04 0.15
Matches are distributed among these distances:
25 12 0.32
26 24 0.63
27 2 0.05
ACGTcount: A:0.78, C:0.04, G:0.17, T:0.00
Consensus pattern (26 bp):
CAGAGAAAAAAAAAAGAGAAGAAAAA
Found at i:26074651 original size:13 final size:12
Alignment explanation
Indices: 26074630--26074685 Score: 60
Period size: 12 Copynumber: 4.5 Consensus size: 12
26074620 GCCAGAAAAA
26074630 AAAAAAGAGAAG
1 AAAAAAGAGAAG
26074642 AAAAACAGAGAA-
1 AAAAA-AGAGAAG
*
26074654 AAAAAAGAAAAAAG
1 AAAAAAG--AGAAG
*
26074668 AAAAAAGAGAAC
1 AAAAAAGAGAAG
26074680 AAAAAA
1 AAAAAA
26074686 AAGAGGTTCA
Statistics
Matches: 37, Mismatches: 3, Indels: 8
0.77 0.06 0.17
Matches are distributed among these distances:
11 2 0.05
12 19 0.51
13 9 0.24
14 7 0.19
ACGTcount: A:0.80, C:0.04, G:0.16, T:0.00
Consensus pattern (12 bp):
AAAAAAGAGAAG
Found at i:26074672 original size:27 final size:29
Alignment explanation
Indices: 26074623--26074689 Score: 79
Period size: 27 Copynumber: 2.4 Consensus size: 29
26074613 GAAGCAGGCC
26074623 AGAAAAAAAA-AAAGAGAAGAAAAACAG-
1 AGAAAAAAAAGAAAGAGAAGAAAAACAGA
*
26074650 AGAAAAAAAAGAAA-A-AAGAAAAAAGAGA
1 AGAAAAAAAAGAAAGAGAAG-AAAAACAGA
*
26074678 ACAAAAAAAAGA
1 AGAAAAAAAAGA
26074690 GGTTCAATTT
Statistics
Matches: 35, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
26 3 0.09
27 18 0.51
28 14 0.40
ACGTcount: A:0.81, C:0.03, G:0.16, T:0.00
Consensus pattern (29 bp):
AGAAAAAAAAGAAAGAGAAGAAAAACAGA
Found at i:26074686 original size:13 final size:12
Alignment explanation
Indices: 26074627--26074686 Score: 59
Period size: 13 Copynumber: 4.8 Consensus size: 12
26074617 CAGGCCAGAA
26074627 AAAAAAAAAGAG
1 AAAAAAAAAGAG
*
26074639 AAGAAAAACAGAG
1 AA-AAAAAAAGAG
*
26074652 -AAAAAAAAGAAA
1 AAAAAAAAAG-AG
26074664 AAAGAAAAAAGAG
1 AAA-AAAAAAGAG
26074677 AACAAAAAAA
1 AA-AAAAAAA
26074687 AGAGGTTCAA
Statistics
Matches: 39, Mismatches: 4, Indels: 9
0.75 0.08 0.17
Matches are distributed among these distances:
11 7 0.18
12 4 0.10
13 20 0.51
14 8 0.21
ACGTcount: A:0.82, C:0.03, G:0.15, T:0.00
Consensus pattern (12 bp):
AAAAAAAAAGAG
Found at i:26074878 original size:16 final size:16
Alignment explanation
Indices: 26074842--26074881 Score: 53
Period size: 16 Copynumber: 2.5 Consensus size: 16
26074832 TTTGTATCTA
26074842 TATTTTAATTTAATTC
1 TATTTTAATTTAATTC
* * *
26074858 AATTTTAATTTTATTT
1 TATTTTAATTTAATTC
26074874 TATTTTAA
1 TATTTTAA
26074882 ATAATTTTAA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.33, C:0.03, G:0.00, T:0.65
Consensus pattern (16 bp):
TATTTTAATTTAATTC
Found at i:26075050 original size:15 final size:16
Alignment explanation
Indices: 26075017--26075048 Score: 55
Period size: 17 Copynumber: 1.9 Consensus size: 16
26075007 AAATATTCTA
26075017 AAATTCTCGTGTTTTTT
1 AAATTCTCGTG-TTTTT
26075034 AAATTCTCGTGTTTT
1 AAATTCTCGTGTTTT
26075049 AATAGAATCA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 4 0.27
17 11 0.73
ACGTcount: A:0.19, C:0.12, G:0.12, T:0.56
Consensus pattern (16 bp):
AAATTCTCGTGTTTTT
Found at i:26075237 original size:39 final size:40
Alignment explanation
Indices: 26075175--26075273 Score: 109
Period size: 39 Copynumber: 2.6 Consensus size: 40
26075165 TCGTGTTTCA
* * *
26075175 AAAAATTTTCGTGTTTTC--AAAAAAATTTCTCGTAT-TTC
1 AAAAATTCTCATGTTTTCAAAAAAAAAATT-TCGTATCTTC
* *
26075213 AAAAATTC-CTTGTTTTCAAAAAAAAAATTTCGTGTCTTC
1 AAAAATTCTCATGTTTTCAAAAAAAAAATTTCGTATCTTC
26075252 AAAAATTCTCATG-TTTCAAAAA
1 AAAAATTCTCATGTTTTCAAAAA
26075274 TCTTCGTGTT
Statistics
Matches: 52, Mismatches: 5, Indels: 7
0.81 0.08 0.11
Matches are distributed among these distances:
37 8 0.15
38 12 0.23
39 29 0.56
40 3 0.06
ACGTcount: A:0.39, C:0.14, G:0.07, T:0.39
Consensus pattern (40 bp):
AAAAATTCTCATGTTTTCAAAAAAAAAATTTCGTATCTTC
Found at i:26075239 original size:22 final size:22
Alignment explanation
Indices: 26075213--26075256 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
26075203 CTCGTATTTC
* *
26075213 AAAAATTCCTTGTTTTCAAAAA
1 AAAAATTCCGTGTCTTCAAAAA
*
26075235 AAAAATTTCGTGTCTTCAAAAA
1 AAAAATTCCGTGTCTTCAAAAA
26075257 TTCTCATGTT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.45, C:0.14, G:0.07, T:0.34
Consensus pattern (22 bp):
AAAAATTCCGTGTCTTCAAAAA
Found at i:26075257 original size:17 final size:16
Alignment explanation
Indices: 26075235--26075310 Score: 73
Period size: 17 Copynumber: 4.5 Consensus size: 16
26075225 TTTTCAAAAA
26075235 AAAAATTTCGTGTCTTC
1 AAAAATTTCGTGT-TTC
*
26075252 AAAAATTCTCATGTTTC
1 AAAAATT-TCGTGTTTC
26075269 AAAAATCTTCGTGTTTTC
1 AAAAAT-TTCGTG-TTTC
* *
26075287 -AAAATTCCAATGTTTC
1 AAAAATTTC-GTGTTTC
26075303 AAAAATTT
1 AAAAATTT
26075311 TTGTGTTTTT
Statistics
Matches: 49, Mismatches: 5, Indels: 10
0.77 0.08 0.16
Matches are distributed among these distances:
16 6 0.12
17 33 0.67
18 10 0.20
ACGTcount: A:0.36, C:0.16, G:0.08, T:0.41
Consensus pattern (16 bp):
AAAAATTTCGTGTTTC
Found at i:26075272 original size:16 final size:16
Alignment explanation
Indices: 26075253--26075306 Score: 56
Period size: 16 Copynumber: 3.2 Consensus size: 16
26075243 CGTGTCTTCA
26075253 AAAATTCTCATGTTTC
1 AAAATTCTCATGTTTC
* *
26075269 AAAAATCTTCGTGTTTTC
1 AAAATTC-TCATG-TTTC
26075287 AAAATTC-CAATGTTTC
1 AAAATTCTC-ATGTTTC
26075303 AAAA
1 AAAA
26075307 ATTTTTGTGT
Statistics
Matches: 31, Mismatches: 4, Indels: 6
0.76 0.10 0.15
Matches are distributed among these distances:
16 15 0.48
17 6 0.19
18 10 0.32
ACGTcount: A:0.37, C:0.17, G:0.07, T:0.39
Consensus pattern (16 bp):
AAAATTCTCATGTTTC
Found at i:26075291 original size:34 final size:34
Alignment explanation
Indices: 26075235--26075319 Score: 111
Period size: 34 Copynumber: 2.5 Consensus size: 34
26075225 TTTTCAAAAA
*
26075235 AAAAATTTCGTGTCTTCAAAAATTCTC-ATGTTTC
1 AAAAATTTCGTGTTTTCAAAAATTC-CAATGTTTC
26075269 AAAAATCTTCGTGTTTTC-AAAATTCCAATGTTTC
1 AAAAAT-TTCGTGTTTTCAAAAATTCCAATGTTTC
*
26075303 AAAAATTTTTGTGTTTT
1 AAAAA-TTTCGTGTTTT
26075320 TTAAAAAAAA
Statistics
Matches: 46, Mismatches: 2, Indels: 6
0.85 0.04 0.11
Matches are distributed among these distances:
33 1 0.02
34 34 0.74
35 11 0.24
ACGTcount: A:0.32, C:0.14, G:0.09, T:0.45
Consensus pattern (34 bp):
AAAAATTTCGTGTTTTCAAAAATTCCAATGTTTC
Found at i:26075317 original size:17 final size:17
Alignment explanation
Indices: 26075165--26075586 Score: 147
Period size: 18 Copynumber: 22.8 Consensus size: 17
26075155 CTTAAAAAAA
26075165 TCGTGTTTCAAAAAATTT
1 TCGTGTTTC-AAAAATTT
26075183 TCGTGTTTTCAAAAAAATTT
1 TCGTG-TTTC--AAAAATTT
*
26075203 CTCGTATTTCAAAAATTCCT
1 -TCGTGTTTCAAAAATT--T
*
26075223 T-GT-TTTCAAAAAAAAAATT
1 TCGTGTTTC----AAAAATTT
*
26075242 TCGTGTCTTCAAAAATTC
1 TCGTGT-TTCAAAAATTT
* *
26075260 TCATGTTTCAAAAATCT
1 TCGTGTTTCAAAAATTT
26075277 TCGTGTTTTC-AAAA-TT
1 TCGTG-TTTCAAAAATTT
* *
26075293 CCAATGTTTCAAAAATTT
1 TC-GTGTTTCAAAAATTT
* *
26075311 TTGTGTTTTTTAAAAAAAAAAGAAAATTT
1 TCGTG---TTT-------CAA-AAA-TTT
**
26075340 TTCGTGTTTTCAAAAATCC
1 T-CGTG-TTTCAAAAATTT
*
26075359 TCGTGTTTTCAAAAATTC
1 TCGTG-TTTCAAAAATTT
** * *
26075377 AGGTGTTTTAAAAACTT
1 TCGTGTTTCAAAAATTT
26075394 TCGTGTTTTCAAAAA-TT
1 TCGTG-TTTCAAAAATTT
*
26075411 TCGATG-ATCAAAAAAATATT
1 TCG-TGTTTC--AAAAAT-TT
*
26075431 TCGTGTTTTTCAAAAAATT
1 TCGTG--TTTCAAAAATTT
26075450 TCGTGTTTCAAAAATTT
1 TCGTGTTTCAAAAATTT
*
26075467 TCATGTTTTCAAAAA-TT
1 TCGTG-TTTCAAAAATTT
* * *
26075484 CCCTGTTTTAAAAATTT
1 TCGTGTTTCAAAAATTT
*
26075501 CCGTGTTTTCAAAAATTT
1 TCGTG-TTTCAAAAATTT
* **
26075519 TCGTGTTTTTATGAATTT
1 TCGTG-TTTCAAAAATTT
* * *
26075537 TCGTGTCTCTAAAATTC
1 TCGTGTTTCAAAAATTT
* *
26075554 TCGTGTTTTAAAATTTTT
1 TCGTGTTTCAAAA-ATTT
26075572 TCGTGTTTTCAAAAA
1 TCGTG-TTTCAAAAA
26075587 AATAATTATT
Statistics
Matches: 306, Mismatches: 55, Indels: 86
0.68 0.12 0.19
Matches are distributed among these distances:
16 16 0.05
17 88 0.29
18 111 0.36
19 25 0.08
20 32 0.10
21 13 0.04
22 5 0.02
27 2 0.01
28 7 0.02
29 4 0.01
30 3 0.01
ACGTcount: A:0.33, C:0.13, G:0.10, T:0.44
Consensus pattern (17 bp):
TCGTGTTTCAAAAATTT
Found at i:26075362 original size:18 final size:18
Alignment explanation
Indices: 26075333--26075586 Score: 216
Period size: 18 Copynumber: 14.3 Consensus size: 18
26075323 AAAAAAAAAG
*
26075333 AAAATTTTTCGTGTTTTC
1 AAAAATTTTCGTGTTTTC
**
26075351 AAAAATCCTCGTGTTTTC
1 AAAAATTTTCGTGTTTTC
***
26075369 AAAAATTCAGGTGTTTT-
1 AAAAATTTTCGTGTTTTC
*
26075386 AAAAACTTTCGTGTTTTC
1 AAAAATTTTCGTGTTTTC
* ***
26075404 AAAAA-TTTCGATGATCAA
1 AAAAATTTTCG-TGTTTTC
26075422 AAAAATATTTCGTGTTTTTC
1 AAAAAT-TTTCGTG-TTTTC
*
26075442 AAAAAATTTCGTG-TTTC
1 AAAAATTTTCGTGTTTTC
*
26075459 AAAAATTTTCATGTTTTC
1 AAAAATTTTCGTGTTTTC
* *
26075477 AAAAA-TTCCCTGTTTT-
1 AAAAATTTTCGTGTTTTC
*
26075493 AAAAATTTCCGTGTTTTC
1 AAAAATTTTCGTGTTTTC
*
26075511 AAAAATTTTCGTGTTTTT
1 AAAAATTTTCGTGTTTTC
** *
26075529 ATGAATTTTCGTG-TCTC
1 AAAAATTTTCGTGTTTTC
* *
26075546 TAAAATTCTCGTGTTTT-
1 AAAAATTTTCGTGTTTTC
*
26075563 AAAATTTTTTCGTGTTTTC
1 AAAA-ATTTTCGTGTTTTC
26075582 AAAAA
1 AAAAA
26075587 AATAATTATT
Statistics
Matches: 186, Mismatches: 39, Indels: 22
0.75 0.16 0.09
Matches are distributed among these distances:
16 5 0.03
17 66 0.35
18 91 0.49
19 13 0.07
20 11 0.06
ACGTcount: A:0.31, C:0.13, G:0.11, T:0.46
Consensus pattern (18 bp):
AAAAATTTTCGTGTTTTC
Found at i:26075398 original size:35 final size:34
Alignment explanation
Indices: 26075342--26075586 Score: 213
Period size: 35 Copynumber: 6.9 Consensus size: 34
26075332 GAAAATTTTT
**
26075342 CGTGTTTTCAAAAATCCTCGTGTTTTCAAAAATTC
1 CGTGTTTT-AAAAATTTTCGTGTTTTCAAAAATTC
* * *
26075377 AGGTGTTTTAAAAACTTTCGTGTTTTCAAAAATTT
1 -CGTGTTTTAAAAATTTTCGTGTTTTCAAAAATTC
*** *
26075412 CGATGATCAAAAAAATATTTCGTGTTTTTCAAAAAATTT
1 CG-TG-TTTTAAAAAT-TTTCGTG-TTTTC-AAAAATTC
* *
26075451 CGTGTTTCAAAAATTTTCATGTTTTCAAAAATTC
1 CGTGTTTTAAAAATTTTCGTGTTTTCAAAAATTC
* * *
26075485 CCTGTTTTAAAAATTTCCGTGTTTTCAAAAATTTT
1 CGTGTTTTAAAAATTTTCGTGTTTTCAAAAA-TTC
** * *
26075520 CGTGTTTTTATGAATTTTCGTG-TCTCTAAAATTC
1 CGTG-TTTTAAAAATTTTCGTGTTTTCAAAAATTC
*
26075554 TCGTGTTTTAAAATTTTTTCGTGTTTTCAAAAA
1 -CGTGTTTTAAAA-ATTTTCGTGTTTTCAAAAA
26075587 AATAATTATT
Statistics
Matches: 167, Mismatches: 32, Indels: 20
0.76 0.15 0.09
Matches are distributed among these distances:
34 43 0.26
35 53 0.32
36 40 0.24
37 14 0.08
38 7 0.04
39 10 0.06
ACGTcount: A:0.30, C:0.13, G:0.11, T:0.45
Consensus pattern (34 bp):
CGTGTTTTAAAAATTTTCGTGTTTTCAAAAATTC
Found at i:26087583 original size:76 final size:77
Alignment explanation
Indices: 26087472--26088218 Score: 939
Period size: 76 Copynumber: 9.7 Consensus size: 77
26087462 CAATTACTGT
*
26087472 TTTTTTTTCAAAAATCAACTCATAATACGAGAGGTGAGTTGAGCCTCGGGTCACGCTAAGGTA-T
1 TTTTTTTTCAAAAATCAACTCATAATACGAGAGGTGAGTTGAGCCTCGGGTCACGCTGAGGTATT
26087536 TTTTAATTTCTA
66 TTTTAATTTCTA
* *
26087548 TTTTTTTTCAAAAATCAACTCATAATACGAGAGGTGAGTTGAGCTTCAGGTCACGCTGAGGTA-T
1 TTTTTTTTCAAAAATCAACTCATAATACGAGAGGTGAGTTGAGCCTCGGGTCACGCTGAGGTATT
*
26087612 TTTTAATTTCTG
66 TTTTAATTTCTA
* * *
26087624 TCTTTTTTT--AAAATCAACTCATAATACGAGAGGTGAGTTGAGCATCGGGTCACGCTGAAGCA-
1 T-TTTTTTTCAAAAATCAACTCATAATACGAGAGGTGAGTTGAGCCTCGGGTCACGCTGAGGTAT
*
26087686 TTTTTAATTTCTG
65 TTTTTAATTTCTA
26087699 TCTTTTTTT---AAATCAACTCATAATACGAGAGGTGAGTTGAGCCTCGGGTCACGCTGAGGTAT
1 T-TTTTTTTCAAAAATCAACTCATAATACGAGAGGTGAGTTGAGCCTCGGGTCACGCTGAGGTA-
*
26087761 TTCTTTTAAATTTCTGT
64 TT-TTTT-AATTTCT-A
* *
26087778 TTTTTTTTCAAAAATCAACTCATAATACGAGAGGTGAGTTGAGCCTTGGGTCACGCTAAGGTATT
1 TTTTTTTTCAAAAATCAACTCATAATACGAGAGGTGAGTTGAGCCTCGGGTCACGCTGAGGTA-T
*
26087843 TCTTTTAAATTTCTG
65 T-TTTT-AATTTCTA
* *
26087858 TTTTTTTTCAAAAATCAACTCATAATACGAGAGGTGAGTTGAGCCTTGGGTCACGCCGAGGTATT
1 TTTTTTTTCAAAAATCAACTCATAATACGAGAGGTGAGTTGAGCCTCGGGTCACGCTGAGGTA-T
26087923 TCTTTTAAATTTC--
65 T-TTTT-AATTTCTA
* *
26087936 -TGTTTTTCAAAAATCAACTCATAATACGAGAGGTAAGTTGAGCCTCGGGTCACGCTGAGGTATT
1 TTTTTTTTCAAAAATCAACTCATAATACGAGAGGTGAGTTGAGCCTCGGGTCACGCTGAGGTATT
*
26088000 TTTTTATTTCT-
66 TTTTAATTTCTA
* * *
26088011 GTTTTTTTCAAAAATCAACTAATAATACGAGAGGTGAGTTGAGCCTCGGGTCACGTTGAGGTATT
1 TTTTTTTTCAAAAATCAACTCATAATACGAGAGGTGAGTTGAGCCTCGGGTCACGCTGAGGTATT
*
26088076 TTTAAATTTCTA
66 TTTTAATTTCTA
* * * ** * *
26088088 -TTTTTTTCAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGACCATGCCGAGGTA
1 TTTTTTTTC--AAAAATCAACTCATAATACGAGAGGTGAGTTGAGCCTCGGGTCACGCTGAGGTA
*
26088152 TTTCTTTTAAATT-TA
64 -TT-TTTTAATTTCTA
* * * *
26088167 -TGTTTTTCAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGTC
1 TTTTTTTTC-AAAAATCAACTCATAATACGAGAGGTGAGTTGAGCCTCGGGTC
26088219 GCATGCCGAG
Statistics
Matches: 613, Mismatches: 42, Indels: 30
0.89 0.06 0.04
Matches are distributed among these distances:
74 54 0.09
75 75 0.12
76 153 0.25
77 69 0.11
78 101 0.16
79 12 0.02
80 83 0.14
81 66 0.11
ACGTcount: A:0.28, C:0.16, G:0.20, T:0.37
Consensus pattern (77 bp):
TTTTTTTTCAAAAATCAACTCATAATACGAGAGGTGAGTTGAGCCTCGGGTCACGCTGAGGTATT
TTTTAATTTCTA
Found at i:26088415 original size:7 final size:7
Alignment explanation
Indices: 26088403--26088437 Score: 52
Period size: 7 Copynumber: 4.7 Consensus size: 7
26088393 ATAAAAGAAT
26088403 TTTTTTA
1 TTTTTTA
26088410 TTTTTTA
1 TTTTTTA
26088417 TTTTTTA
1 TTTTTTA
26088424 TTATTTTTA
1 -T-TTTTTA
26088433 TTTTT
1 TTTTT
26088438 GCATTTTGAC
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
7 18 0.69
8 2 0.08
9 6 0.23
ACGTcount: A:0.14, C:0.00, G:0.00, T:0.86
Consensus pattern (7 bp):
TTTTTTA
Found at i:26088422 original size:17 final size:16
Alignment explanation
Indices: 26088402--26088437 Score: 56
Period size: 16 Copynumber: 2.2 Consensus size: 16
26088392 AATAAAAGAA
26088402 TTTTT-TTATTTTTTAT
1 TTTTTATTA-TTTTTAT
26088418 TTTTTATTATTTTTAT
1 TTTTTATTATTTTTAT
26088434 TTTT
1 TTTT
26088438 GCATTTTGAC
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 16 0.84
17 3 0.16
ACGTcount: A:0.14, C:0.00, G:0.00, T:0.86
Consensus pattern (16 bp):
TTTTTATTATTTTTAT
Found at i:26088483 original size:30 final size:30
Alignment explanation
Indices: 26088439--26088563 Score: 152
Period size: 30 Copynumber: 4.2 Consensus size: 30
26088429 TTTATTTTTG
*
26088439 CATTTTGA-CCCTAAACTTTTCTAAAATTG
1 CATTTTGACCCCTAAACTTTTCTAAAATTA
*
26088468 CATTTTGACCCCTAAAATTTT-TCAAAATTA
1 CATTTTGACCCCTAAACTTTTCT-AAAATTA
26088498 CATTTCT-ACCCCTAAACTTTTCT-AAATTA
1 CATTT-TGACCCCTAAACTTTTCTAAAATTA
* *
26088527 CATTTGGGCCCCTAAAC-TTTCTATAAATTA
1 CATTTTGACCCCTAAACTTTTCTA-AAATTA
26088557 CATTTTG
1 CATTTTG
26088564 GCCATTTCCT
Statistics
Matches: 83, Mismatches: 6, Indels: 13
0.81 0.06 0.13
Matches are distributed among these distances:
28 5 0.06
29 29 0.35
30 47 0.57
31 2 0.02
ACGTcount: A:0.31, C:0.22, G:0.06, T:0.41
Consensus pattern (30 bp):
CATTTTGACCCCTAAACTTTTCTAAAATTA
Found at i:26088539 original size:59 final size:60
Alignment explanation
Indices: 26088447--26088561 Score: 162
Period size: 59 Copynumber: 1.9 Consensus size: 60
26088437 TGCATTTTGA
* * *
26088447 CCCTAAACTTTTCTAAAATTGCATTTTGACCCCTAAAATTTTTCA-AAATTACATTTCTAC
1 CCCTAAACTTTTCTAAAATTACATTTGGACCCCTAAAATTTCT-ATAAATTACATTTCTAC
* *
26088507 CCCTAAACTTTTCT-AAATTACATTTGGGCCCCTAAACTTTCTATAAATTACATTT
1 CCCTAAACTTTTCTAAAATTACATTTGGACCCCTAAAATTTCTATAAATTACATTT
26088562 TGGCCATTTC
Statistics
Matches: 49, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
58 1 0.02
59 34 0.69
60 14 0.29
ACGTcount: A:0.32, C:0.23, G:0.04, T:0.40
Consensus pattern (60 bp):
CCCTAAACTTTTCTAAAATTACATTTGGACCCCTAAAATTTCTATAAATTACATTTCTAC
Found at i:26088836 original size:12 final size:11
Alignment explanation
Indices: 26088809--26088843 Score: 52
Period size: 11 Copynumber: 3.1 Consensus size: 11
26088799 AATAAATTTT
26088809 GAGCAAAAAAA
1 GAGCAAAAAAA
*
26088820 GAGCAAAAACA
1 GAGCAAAAAAA
26088831 GTAGCAAAAAAA
1 G-AGCAAAAAAA
26088843 G
1 G
26088844 GCATACCGCC
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
11 11 0.52
12 10 0.48
ACGTcount: A:0.66, C:0.11, G:0.20, T:0.03
Consensus pattern (11 bp):
GAGCAAAAAAA
Found at i:26088960 original size:37 final size:35
Alignment explanation
Indices: 26088913--26088981 Score: 102
Period size: 35 Copynumber: 1.9 Consensus size: 35
26088903 CAACTAGCAA
26088913 AACAACCAAAAAGCAAAAAAAAAAAAGAGAAAGAAAC
1 AACAACC-AAAAG-AAAAAAAAAAAAGAGAAAGAAAC
* *
26088950 AACAAGCAAAAGAGAAAAAAAAAAGAGAAAGA
1 AACAACCAAAAGAAAAAAAAAAAAGAGAAAGA
26088982 GAAAAGAAGA
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
35 19 0.63
36 5 0.17
37 6 0.20
ACGTcount: A:0.75, C:0.10, G:0.14, T:0.00
Consensus pattern (35 bp):
AACAACCAAAAGAAAAAAAAAAAAGAGAAAGAAAC
Found at i:26089105 original size:4 final size:4
Alignment explanation
Indices: 26089096--26089166 Score: 72
Period size: 4 Copynumber: 17.0 Consensus size: 4
26089086 GGCTGATCGG
* *
26089096 GAAA GAAA GAAA AAAGA GAAA GAAAA GAGAA GAAA GAAA GAAA GAAA GAAT
1 GAAA GAAA GAAA GAA-A GAAA G-AAA GA-AA GAAA GAAA GAAA GAAA GAAA
*
26089147 G-AA GAAGA AAAA GAAA GAAA
1 GAAA GAA-A GAAA GAAA GAAA
26089167 AAAATAAAAA
Statistics
Matches: 56, Mismatches: 6, Indels: 10
0.78 0.08 0.14
Matches are distributed among these distances:
3 2 0.04
4 40 0.71
5 14 0.25
ACGTcount: A:0.73, C:0.00, G:0.25, T:0.01
Consensus pattern (4 bp):
GAAA
Found at i:26089117 original size:13 final size:13
Alignment explanation
Indices: 26089099--26089145 Score: 60
Period size: 13 Copynumber: 3.6 Consensus size: 13
26089089 TGATCGGGAA
26089099 AGAAAGAAAAAAG
1 AGAAAGAAAAAAG
*
26089112 AGAAAGAAAAGAG
1 AGAAAGAAAAAAG
*
26089125 AAGAAAGAAAGAA-
1 -AGAAAGAAAAAAG
26089138 AGAAAGAA
1 AGAAAGAA
26089146 TGAAGAAGAA
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
12 8 0.27
13 12 0.40
14 10 0.33
ACGTcount: A:0.74, C:0.00, G:0.26, T:0.00
Consensus pattern (13 bp):
AGAAAGAAAAAAG
Found at i:26089378 original size:26 final size:25
Alignment explanation
Indices: 26089325--26089378 Score: 63
Period size: 26 Copynumber: 2.1 Consensus size: 25
26089315 AAAAAAAGAA
* **
26089325 CAGGCCATTTCCAGCAGCCCAAGTG
1 CAGGCCAATTCCAGCAGCCCAACAG
*
26089350 CAGGCCCAATTCCAGCAGCCCACCAG
1 CAGG-CCAATTCCAGCAGCCCAACAG
26089376 CAG
1 CAG
26089379 TCTCCCAGGC
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
25 4 0.17
26 20 0.83
ACGTcount: A:0.26, C:0.41, G:0.22, T:0.11
Consensus pattern (25 bp):
CAGGCCAATTCCAGCAGCCCAACAG
Found at i:26089475 original size:18 final size:17
Alignment explanation
Indices: 26089454--26089512 Score: 61
Period size: 18 Copynumber: 3.5 Consensus size: 17
26089444 GAAGCAGGTC
26089454 AAAAAAAAAAGAG--AG
1 AAAAAAAAAAGAGAAAG
* *
26089469 -AAGAAAAAAGAGAAAA
1 AAAAAAAAAAGAGAAAG
26089485 AAAAGAAAAAAGAGAACAG
1 AAAA-AAAAAAGAGAA-AG
26089504 AAAAAAAAA
1 AAAAAAAAA
26089513 GAGGTTCAAT
Statistics
Matches: 35, Mismatches: 4, Indels: 7
0.76 0.09 0.15
Matches are distributed among these distances:
14 11 0.31
16 1 0.03
17 2 0.06
18 16 0.46
19 5 0.14
ACGTcount: A:0.81, C:0.02, G:0.17, T:0.00
Consensus pattern (17 bp):
AAAAAAAAAAGAGAAAG
Found at i:26089480 original size:12 final size:11
Alignment explanation
Indices: 26089457--26089511 Score: 58
Period size: 12 Copynumber: 4.7 Consensus size: 11
26089447 GCAGGTCAAA
26089457 AAAAAAAGAGAG
1 AAAAAAA-AGAG
26089469 AAGAAAAAAGAG
1 AA-AAAAAAGAG
26089481 AAAAAAAAGA-
1 AAAAAAAAGAG
*
26089491 AAAAAGAGAACAG
1 AAAAA-A-AAGAG
26089504 AAAAAAAA
1 AAAAAAAA
26089512 AGAGGTTCAA
Statistics
Matches: 38, Mismatches: 1, Indels: 9
0.79 0.02 0.19
Matches are distributed among these distances:
10 5 0.13
11 11 0.29
12 12 0.32
13 10 0.26
ACGTcount: A:0.80, C:0.02, G:0.18, T:0.00
Consensus pattern (11 bp):
AAAAAAAAGAG
Found at i:26089484 original size:9 final size:9
Alignment explanation
Indices: 26089470--26089500 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
26089460 AAAAGAGAGA
26089470 AGAAAAAAG
1 AGAAAAAAG
*
26089479 AGAAAAAAA
1 AGAAAAAAG
26089488 AGAAAAAAG
1 AGAAAAAAG
26089497 AGAA
1 AGAA
26089501 CAGAAAAAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.81, C:0.00, G:0.19, T:0.00
Consensus pattern (9 bp):
AGAAAAAAG
Found at i:26089490 original size:25 final size:24
Alignment explanation
Indices: 26089455--26089515 Score: 77
Period size: 25 Copynumber: 2.5 Consensus size: 24
26089445 AAGCAGGTCA
*
26089455 AAAAAAAAAGAGAGAAGAAAAAAG
1 AAAAAAAAAGAGAAAAGAAAAAAG
* * *
26089479 AGAAAAAAAAGAAAAAAGAGAACAG
1 A-AAAAAAAAGAGAAAAGAAAAAAG
26089504 AAAAAAAAAGAG
1 AAAAAAAAAGAG
26089516 GTTCAATTTG
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
24 11 0.35
25 20 0.65
ACGTcount: A:0.79, C:0.02, G:0.20, T:0.00
Consensus pattern (24 bp):
AAAAAAAAAGAGAAAAGAAAAAAG
Found at i:26089691 original size:21 final size:20
Alignment explanation
Indices: 26089667--26089709 Score: 59
Period size: 21 Copynumber: 2.1 Consensus size: 20
26089657 TTTGTATCTA
*
26089667 TATTTTAATTTAATTCAATTT
1 TATTTTAATTTAAAT-AATTT
*
26089688 TATTTTATTTTAAATAATTT
1 TATTTTAATTTAAATAATTT
26089708 TA
1 TA
26089710 ATAAATAAGG
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
20 7 0.35
21 13 0.65
ACGTcount: A:0.35, C:0.02, G:0.00, T:0.63
Consensus pattern (20 bp):
TATTTTAATTTAAATAATTT
Found at i:26089860 original size:15 final size:16
Alignment explanation
Indices: 26089827--26089858 Score: 55
Period size: 17 Copynumber: 1.9 Consensus size: 16
26089817 AAATATTCTA
26089827 AAATTCTCGTGTTTTTT
1 AAATTCTCGTG-TTTTT
26089844 AAATTCTCGTGTTTT
1 AAATTCTCGTGTTTT
26089859 AATAGAATCA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 4 0.27
17 11 0.73
ACGTcount: A:0.19, C:0.12, G:0.12, T:0.56
Consensus pattern (16 bp):
AAATTCTCGTGTTTTT
Found at i:26090000 original size:18 final size:17
Alignment explanation
Indices: 26089979--26090368 Score: 209
Period size: 18 Copynumber: 21.6 Consensus size: 17
26089969 AAAAAAATCC
26089979 TGTTTCAAAAAATTTTCG
1 TGTTTC-AAAAATTTTCG
26089997 TGTTTTCAAAAAAATTTCTCG
1 TG-TTTC--AAAAATTT-TCG
* *
26090018 TATTTCAAAAATTCTTTG
1 TGTTTCAAAAATT-TTCG
*
26090036 T-TTTCAAAAAAAAAAATTTCG
1 TGTTTC-----AAAAATTTTCG
* *
26090057 TGTCTTCAAAAATTCTCA
1 TGT-TTCAAAAATTTTCG
*
26090075 TGTTTCAAAAATCTTCG
1 TGTTTCAAAAATTTTCG
*
26090092 TGTTTTC-AAAA-TTCCAG
1 TG-TTTCAAAAATTTTC-G
**
26090109 TGTTTTGAAAATTTTCG
1 TGTTTCAAAAATTTTCG
**
26090126 TGTTTTCAAAAATCCTCG
1 TG-TTTCAAAAATTTTCG
26090144 TGTTTTCAAAAA-TTTCGG
1 TG-TTTCAAAAATTTTC-G
* *
26090162 TGTTTTAAAAACTTTCG
1 TGTTTCAAAAATTTTCG
26090179 TGTTTTCAAAAA-TTTC-
1 TG-TTTCAAAAATTTTCG
* * *
26090195 TATGATCAAAATTTTTTTTCG
1 TGT-TTCAAAA---ATTTTCG
*
26090216 TGTTTTCCAAAAAATTTCG
1 TG-TTT-CAAAAATTTTCG
*
26090235 TGTTTCAAAAATTTTCA
1 TGTTTCAAAAATTTTCG
* *
26090252 TGTTTTCAAAAA-TTCCC
1 TG-TTTCAAAAATTTTCG
* *
26090269 TGTTTTAAAAATTTCCG
1 TGTTTCAAAAATTTTCG
26090286 TGTTTTCAAAAATTTTCG
1 TG-TTTCAAAAATTTTCG
* **
26090304 TGTTTTTATGAATTTTCG
1 TG-TTTCAAAAATTTTCG
* * *
26090322 TGTCTCTAAAATTGTCG
1 TGTTTCAAAAATTTTCG
*
26090339 TGTTTTAAAAAATTTTCG
1 TG-TTTCAAAAATTTTCG
26090357 TGTTTTCAAAAA
1 TG-TTTCAAAAA
26090369 AATAATTATT
Statistics
Matches: 290, Mismatches: 51, Indels: 62
0.72 0.13 0.15
Matches are distributed among these distances:
15 1 0.00
16 20 0.07
17 82 0.28
18 132 0.46
19 12 0.04
20 17 0.06
21 10 0.03
22 13 0.04
23 3 0.01
ACGTcount: A:0.31, C:0.13, G:0.11, T:0.45
Consensus pattern (17 bp):
TGTTTCAAAAATTTTCG
Found at i:26090065 original size:40 final size:40
Alignment explanation
Indices: 26090004--26090085 Score: 105
Period size: 40 Copynumber: 2.0 Consensus size: 40
26089994 TCGTGTTTTC
* *
26090004 AAAAAAATTTCTCGTATTTCAAAAATTCT-TTGTTTTCAAA
1 AAAAAAAATTCTCGTATTTCAAAAATTCTCATG-TTTCAAA
*
26090044 AAAAAAAATT-TCGTGTCTTCAAAAATTCTCATGTTTCAAA
1 AAAAAAAATTCTCGTAT-TTCAAAAATTCTCATGTTTCAAA
26090084 AA
1 AA
26090086 TCTTCGTGTT
Statistics
Matches: 37, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
39 5 0.14
40 30 0.81
41 2 0.05
ACGTcount: A:0.43, C:0.13, G:0.06, T:0.38
Consensus pattern (40 bp):
AAAAAAAATTCTCGTATTTCAAAAATTCTCATGTTTCAAA
Found at i:26090069 original size:17 final size:17
Alignment explanation
Indices: 26090047--26090368 Score: 262
Period size: 18 Copynumber: 18.3 Consensus size: 17
26090037 TTTCAAAAAA
*
26090047 AAAAATTTCGTGTCTTC
1 AAAAATTTCGTGTTTTC
*
26090064 AAAAATTCTCATG-TTTC
1 AAAAATT-TCGTGTTTTC
26090081 AAAAATCTTCGTGTTTTC
1 AAAAAT-TTCGTGTTTTC
* *
26090099 -AAAATTCCAGTGTTTTG
1 AAAAATTTC-GTGTTTTC
*
26090116 AAAATTTTCGTGTTTTC
1 AAAAATTTCGTGTTTTC
*
26090133 AAAAATCCTCGTGTTTTC
1 AAAAAT-TTCGTGTTTTC
26090151 AAAAATTTCGGTGTTTT-
1 AAAAATTTC-GTGTTTTC
26090168 AAAAACTTTCGTGTTTTC
1 AAAAA-TTTCGTGTTTTC
* **
26090186 AAAAATTTC-TATGATC
1 AAAAATTTCGTGTTTTC
*
26090202 AAAATTTTTTTTCGTGTTTTCC
1 AAAA----ATTTCGTGTTTT-C
26090224 AAAAAATTTCGTG-TTTC
1 -AAAAATTTCGTGTTTTC
*
26090241 AAAAATTTTCATGTTTTC
1 AAAAA-TTTCGTGTTTTC
* *
26090259 AAAAATTCCCTGTTTT-
1 AAAAATTTCGTGTTTTC
26090275 AAAAATTTCCGTGTTTTC
1 AAAAATTT-CGTGTTTTC
*
26090293 AAAAATTTTCGTGTTTTT
1 AAAAA-TTTCGTGTTTTC
* * *
26090311 ATGAATTTTCGTG-TCTC
1 A-AAAATTTCGTGTTTTC
* *
26090328 TAAAATTGTCGTGTTTTA
1 AAAAATT-TCGTGTTTTC
26090346 AAAAATTTTCGTGTTTTC
1 AAAAA-TTTCGTGTTTTC
26090364 AAAAA
1 AAAAA
26090369 AATAATTATT
Statistics
Matches: 244, Mismatches: 36, Indels: 49
0.74 0.11 0.15
Matches are distributed among these distances:
16 26 0.11
17 92 0.38
18 100 0.41
19 14 0.06
20 4 0.02
21 3 0.01
22 1 0.00
23 4 0.02
ACGTcount: A:0.30, C:0.13, G:0.11, T:0.46
Consensus pattern (17 bp):
AAAAATTTCGTGTTTTC
Found at i:26090092 original size:35 final size:35
Alignment explanation
Indices: 26090047--26090368 Score: 232
Period size: 35 Copynumber: 9.1 Consensus size: 35
26090037 TTTCAAAAAA
*
26090047 AAAAATTTCGTGTCTTCAAAAATTCTCATG-TTTC
1 AAAAATTTCGTGTTTTCAAAAATTCTCATGTTTTC
*
26090081 AAAAATCTTCGTGTTTTC-AAAATTC-CAGTGTTTTG
1 AAAAAT-TTCGTGTTTTCAAAAATTCTCA-TGTTTTC
* * *
26090116 AAAATTTTCGTGTTTTCAAAAATCCTCGTGTTTTC
1 AAAAATTTCGTGTTTTCAAAAATTCTCATGTTTTC
*
26090151 AAAAATTTCGGTGTTTT-AAAAACTT-TCGTGTTTTC
1 AAAAATTTC-GTGTTTTCAAAAA-TTCTCATGTTTTC
* ** * * *
26090186 AAAAATTTC-TATGATCAAAATTTTTTTTCGTGTTTTCC
1 AAAAATTTCGTGTTTTCAAAA---ATTCTCATGTTTT-C
*
26090224 AAAAAATTTCGTG-TTTCAAAAATTTTCATGTTTTC
1 -AAAAATTTCGTGTTTTCAAAAATTCTCATGTTTTC
* * *
26090259 AAAAATTCCCTGTTTT-AAAAATT-TCCGTGTTTTC
1 AAAAATTTCGTGTTTTCAAAAATTCT-CATGTTTTC
* ** * * *
26090293 AAAAATTTTCGTGTTTTTATGAATTTTCGTG-TCTC
1 AAAAA-TTTCGTGTTTTCAAAAATTCTCATGTTTTC
* * * *
26090328 TAAAATTGTCGTGTTTTAAAAAATTTTCGTGTTTTC
1 AAAAATT-TCGTGTTTTCAAAAATTCTCATGTTTTC
26090364 AAAAA
1 AAAAA
26090369 AATAATTATT
Statistics
Matches: 235, Mismatches: 31, Indels: 42
0.76 0.10 0.14
Matches are distributed among these distances:
33 6 0.03
34 62 0.26
35 102 0.43
36 38 0.16
37 10 0.04
38 1 0.00
39 15 0.06
40 1 0.00
ACGTcount: A:0.30, C:0.13, G:0.11, T:0.46
Consensus pattern (35 bp):
AAAAATTTCGTGTTTTCAAAAATTCTCATGTTTTC
Found at i:26090243 original size:39 final size:37
Alignment explanation
Indices: 26090174--26090265 Score: 93
Period size: 39 Copynumber: 2.5 Consensus size: 37
26090164 TTTTAAAAAC
*
26090174 TTTCGTGTTTTCAAAAATTTCTATGATCAAAATTTTT
1 TTTCGTGTTTTCAAAAATTTCTATGATCAAAAATTTT
* *
26090211 TTTCGTGTTTTCCAAAAAATTTC-GTGTTTCAAAAA---T
1 TTTCGTGTTTT-C-AAAAATTTCTATG-ATCAAAAATTTT
*
26090247 TTTCATGTTTTCAAAAATT
1 TTTCGTGTTTTCAAAAATT
26090266 CCCTGTTTTA
Statistics
Matches: 48, Mismatches: 4, Indels: 9
0.79 0.07 0.15
Matches are distributed among these distances:
34 7 0.15
35 1 0.02
36 11 0.23
37 11 0.23
38 3 0.06
39 15 0.31
ACGTcount: A:0.30, C:0.12, G:0.09, T:0.49
Consensus pattern (37 bp):
TTTCGTGTTTTCAAAAATTTCTATGATCAAAAATTTT
Found at i:26091170 original size:25 final size:24
Alignment explanation
Indices: 26091131--26091293 Score: 93
Period size: 25 Copynumber: 6.6 Consensus size: 24
26091121 CTATAAACGG
26091131 GAAGCTC-TGGAGAGCCATTAATCG-
1 GAAGCTCAT-GAGAGCCATT-ATCGA
* * *
26091155 GAAAGCTCATGCGAGCCAATATCAA
1 G-AAGCTCATGAGAGCCATTATCGA
*
26091180 GAAGCTC-TGAAGAGCTATTAATCG-
1 GAAGCTCATG-AGAGCCATT-ATCGA
*
26091204 GAAAGCTCGTGAGAGCCAATTATCGA
1 G-AAGCTCATGAGAGCC-ATTATCGA
* * * *
26091230 GAAGCTAAT-ACGAGCCATAAACTA
1 GAAGCTCATGA-GAGCCATTATCGA
* *
26091254 GAAGCTCAAGAGAGCCATATAACGA
1 GAAGCTCATGAGAGCCAT-TATCGA
* *
26091279 GACGCTCATAAGAGC
1 GAAGCTCATGAGAGC
26091294 TGTGGTGAGT
Statistics
Matches: 107, Mismatches: 20, Indels: 23
0.71 0.13 0.15
Matches are distributed among these distances:
23 2 0.02
24 37 0.35
25 61 0.57
26 7 0.07
ACGTcount: A:0.37, C:0.21, G:0.24, T:0.18
Consensus pattern (24 bp):
GAAGCTCATGAGAGCCATTATCGA
Found at i:26091184 original size:49 final size:50
Alignment explanation
Indices: 26091131--26091235 Score: 158
Period size: 49 Copynumber: 2.1 Consensus size: 50
26091121 CTATAAACGG
* *
26091131 GAAGCTCTGGAGAGCCATTAATCGGAAAGCTCATGCGAGCCAA-TATCAA
1 GAAGCTCTGAAGAGCCATTAATCGGAAAGCTCATGAGAGCCAATTATCAA
* * *
26091180 GAAGCTCTGAAGAGCTATTAATCGGAAAGCTCGTGAGAGCCAATTATCGA
1 GAAGCTCTGAAGAGCCATTAATCGGAAAGCTCATGAGAGCCAATTATCAA
26091230 GAAGCT
1 GAAGCT
26091236 AATACGAGCC
Statistics
Matches: 50, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
49 39 0.78
50 11 0.22
ACGTcount: A:0.34, C:0.20, G:0.26, T:0.20
Consensus pattern (50 bp):
GAAGCTCTGAAGAGCCATTAATCGGAAAGCTCATGAGAGCCAATTATCAA
Found at i:26094548 original size:13 final size:15
Alignment explanation
Indices: 26094518--26094549 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
26094508 ATATTTCATG
26094518 CATTTCATCAATAAT
1 CATTTCATCAATAAT
26094533 CATTTCAT-AA-AAT
1 CATTTCATCAATAAT
26094546 CATT
1 CATT
26094550 ATTTCATATA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
13 7 0.41
14 2 0.12
15 8 0.47
ACGTcount: A:0.41, C:0.19, G:0.00, T:0.41
Consensus pattern (15 bp):
CATTTCATCAATAAT
Found at i:26094779 original size:6 final size:6
Alignment explanation
Indices: 26094754--26094790 Score: 56
Period size: 6 Copynumber: 5.8 Consensus size: 6
26094744 CCAAACACAC
26094754 CAGTAAA CAGTAA TCAGTAA CAGTAA CAGTAA CAGTA
1 CAGT-AA CAGTAA -CAGTAA CAGTAA CAGTAA CAGTA
26094791 TTAAACACAC
Statistics
Matches: 29, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
6 19 0.66
7 10 0.34
ACGTcount: A:0.49, C:0.16, G:0.16, T:0.19
Consensus pattern (6 bp):
CAGTAA
Found at i:26094822 original size:45 final size:45
Alignment explanation
Indices: 26094765--26094959 Score: 207
Period size: 45 Copynumber: 4.2 Consensus size: 45
26094755 AGTAAACAGT
**
26094765 AATCAGTAACAGTAACAGTAACAGTATTAAACACACAAAGTGCTG
1 AATCAGTAACAGTAACAGTAACAGTATTCGACACACAAAGTGCTG
* * *
26094810 AATCTGTAACAGTAATAGTAACAGTATTCGACACACAAAGCGCCGAATCG
1 AATCAGTAACAGTAACAGTAACAGTATTCGACACACAAAGTG-C---T-G
*
26094860 ATAACAGTAACAGTAACAGTAACAGTATTCGACACACAAAGTG-TCG
1 A-ATCAGTAACAGTAACAGTAACAGTATTCGACACACAAAGTGCT-G
* * *
26094906 AATCAGTAATTAGTAACAGTAACAGTAGTCGACACA-TAAGTGTCT-
1 AATCAGTAA-CAGTAACAGTAACAGTATTCGACACACAAAGTG-CTG
26094951 AATCAGTAA
1 AATCAGTAA
26094960 GCCGGCAAAT
Statistics
Matches: 128, Mismatches: 13, Indels: 18
0.81 0.08 0.11
Matches are distributed among these distances:
45 58 0.45
46 29 0.23
47 1 0.01
49 1 0.01
50 2 0.02
51 37 0.29
ACGTcount: A:0.43, C:0.18, G:0.17, T:0.22
Consensus pattern (45 bp):
AATCAGTAACAGTAACAGTAACAGTATTCGACACACAAAGTGCTG
Found at i:26094830 original size:51 final size:51
Alignment explanation
Indices: 26094763--26094932 Score: 203
Period size: 51 Copynumber: 3.4 Consensus size: 51
26094753 CCAGTAAACA
**
26094763 GTAATCAGTAACAGTAACAGTAACAGTATTAAACACACAAAGTGCTGAATC
1 GTAATCAGTAACAGTAACAGTAACAGTATTCGACACACAAAGTGCTGAATC
* * *
26094814 ----T--GTAACAGTAATAGTAACAGTATTCGACACACAAAGCGCCGAATC
1 GTAATCAGTAACAGTAACAGTAACAGTATTCGACACACAAAGTGCTGAATC
26094859 GATAA-CAGTAACAGTAACAGTAACAGTATTCGACACACAAAGTG-TCGAATC
1 G-TAATCAGTAACAGTAACAGTAACAGTATTCGACACACAAAGTGCT-GAATC
*
26094910 AGTAATTAGTAACAGTAACAGTA
1 -GTAATCAGTAACAGTAACAGTA
26094933 GTCGACACAT
Statistics
Matches: 100, Mismatches: 9, Indels: 19
0.78 0.07 0.15
Matches are distributed among these distances:
45 39 0.39
47 1 0.01
51 43 0.43
52 17 0.17
ACGTcount: A:0.44, C:0.18, G:0.17, T:0.21
Consensus pattern (51 bp):
GTAATCAGTAACAGTAACAGTAACAGTATTCGACACACAAAGTGCTGAATC
Found at i:26094872 original size:6 final size:6
Alignment explanation
Indices: 26094861--26094886 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
26094851 GCCGAATCGA
26094861 TAACAG TAACAG TAACAG TAACAG TA
1 TAACAG TAACAG TAACAG TAACAG TA
26094887 TTCGACACAC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.50, C:0.15, G:0.15, T:0.19
Consensus pattern (6 bp):
TAACAG
Found at i:26095496 original size:2 final size:2
Alignment explanation
Indices: 26095489--26095516 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
26095479 TATTCAATTC
26095489 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
26095517 TCATTTTCCA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:26102510 original size:9 final size:9
Alignment explanation
Indices: 26102496--26102555 Score: 54
Period size: 9 Copynumber: 6.9 Consensus size: 9
26102486 TATCAATAAA
26102496 ATATAAAAT
1 ATATAAAAT
26102505 ATATAAAAGT
1 ATATAAAA-T
*
26102515 -TA-AAAAG
1 ATATAAAAT
*
26102522 ATA-AAAAA
1 ATATAAAAT
*
26102530 ATAAAAAAT
1 ATATAAAAT
*
26102539 ATATAAAAA
1 ATATAAAAT
26102548 ATATAAAA
1 ATATAAAA
26102556 CGTATGTAAA
Statistics
Matches: 43, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
8 13 0.30
9 29 0.67
10 1 0.02
ACGTcount: A:0.73, C:0.00, G:0.03, T:0.23
Consensus pattern (9 bp):
ATATAAAAT
Found at i:26107545 original size:19 final size:21
Alignment explanation
Indices: 26107512--26107566 Score: 71
Period size: 19 Copynumber: 2.7 Consensus size: 21
26107502 TAATATATAT
26107512 ATATATATATATTTTATTTTA
1 ATATATATATATTTTATTTTA
26107533 ATATA-ATAT-TTTTATTTTA
1 ATATATATATATTTTATTTTA
*
26107552 TTAT-TATATAATTTT
1 ATATATATAT-ATTTT
26107567 TGAAAATATT
Statistics
Matches: 30, Mismatches: 1, Indels: 6
0.81 0.03 0.16
Matches are distributed among these distances:
19 17 0.57
20 4 0.13
21 9 0.30
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (21 bp):
ATATATATATATTTTATTTTA
Found at i:26107548 original size:24 final size:23
Alignment explanation
Indices: 26107521--26107567 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 23
26107511 TATATATATA
26107521 TATTTTATT-TTAATATAATATTTT
1 TATTTTATTATT-ATATAAT-TTTT
26107545 TATTTTATTATTATATAATTTTT
1 TATTTTATTATTATATAATTTTT
26107568 GAAAATATTT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
23 4 0.18
24 16 0.73
25 2 0.09
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (23 bp):
TATTTTATTATTATATAATTTTT
Found at i:26108557 original size:15 final size:15
Alignment explanation
Indices: 26108511--26108559 Score: 55
Period size: 15 Copynumber: 3.2 Consensus size: 15
26108501 ATCATATTTA
26108511 CACTTTCATTTTGGT
1 CACTTTCATTTTGGT
* *
26108526 CAC-CTAACTTTTGGGT
1 CACTTTCA-TTTT-GGT
26108542 CACTTTCATTTTGGT
1 CACTTTCATTTTGGT
26108557 CAC
1 CAC
26108560 CCAAAAAATA
Statistics
Matches: 27, Mismatches: 4, Indels: 6
0.73 0.11 0.16
Matches are distributed among these distances:
14 2 0.07
15 13 0.48
16 10 0.37
17 2 0.07
ACGTcount: A:0.16, C:0.24, G:0.14, T:0.45
Consensus pattern (15 bp):
CACTTTCATTTTGGT
Found at i:26109257 original size:14 final size:14
Alignment explanation
Indices: 26109240--26109281 Score: 50
Period size: 14 Copynumber: 3.0 Consensus size: 14
26109230 TTGAATCTTA
26109240 ATATTTAAAATTTT
1 ATATTTAAAATTTT
*
26109254 ATATTTCAAAACTTT
1 ATATTT-AAAATTTT
*
26109269 A-ATTTAGAATTTT
1 ATATTTAAAATTTT
26109282 CAGCAATTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
13 6 0.25
14 10 0.42
15 8 0.33
ACGTcount: A:0.40, C:0.05, G:0.02, T:0.52
Consensus pattern (14 bp):
ATATTTAAAATTTT
Found at i:26109796 original size:26 final size:24
Alignment explanation
Indices: 26109739--26109787 Score: 73
Period size: 23 Copynumber: 2.1 Consensus size: 24
26109729 ATTATTAAAA
**
26109739 ATCAAATAATAA-AAGTATCAAAC
1 ATCAAATAATAATAAAAATCAAAC
26109762 ATCAAATAATAATAAAAATCAAAC
1 ATCAAATAATAATAAAAATCAAAC
26109786 AT
1 AT
26109788 AACAGATAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
23 12 0.52
24 11 0.48
ACGTcount: A:0.63, C:0.12, G:0.02, T:0.22
Consensus pattern (24 bp):
ATCAAATAATAATAAAAATCAAAC
Found at i:26109805 original size:26 final size:24
Alignment explanation
Indices: 26109746--26109806 Score: 59
Period size: 26 Copynumber: 2.4 Consensus size: 24
26109736 AAAATCAAAT
*
26109746 AATAAAAGTATCAAACATCAAATAAT
1 AATAAAA--ATCAAACATCAAATAAC
*
26109772 AATAAAAATCAAACATAACAGATAAC
1 AATAAAAATCAAACAT--CAAATAAC
*
26109798 AATGAAAAT
1 AATAAAAAT
26109807 TAGGAGCGCA
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
24 9 0.30
26 21 0.70
ACGTcount: A:0.64, C:0.11, G:0.05, T:0.20
Consensus pattern (24 bp):
AATAAAAATCAAACATCAAATAAC
Found at i:26116574 original size:124 final size:125
Alignment explanation
Indices: 26116354--26116603 Score: 484
Period size: 124 Copynumber: 2.0 Consensus size: 125
26116344 CTCACGGAGG
*
26116354 TCATGTGGCACAAAATCGACCTTGTTCACCAATAGTCACACAGCCGTATTATTAGACCTTGTTAG
1 TCATGTGGCACAAAATCGACCTTGTTCACCAATAGTCACACAGCCGTATTATTAGACCATGTTAG
26116419 TAATTTAACTAAATCTATTTCATAAAATTGATATTGTTTAACTATTAAAAAAGG-ATTAA
66 TAATTTAACTAAATCTATTTCATAAAATTGATATTGTTTAACTATTAAAAAAGGAATTAA
26116478 TCATGTGGCACAAAATCGACCTTGTTCACCAATAGTCACACAGCCGTATTATTAGACCATGTTAG
1 TCATGTGGCACAAAATCGACCTTGTTCACCAATAGTCACACAGCCGTATTATTAGACCATGTTAG
26116543 TAATTTAACTAAATCTATTTCATAAAATTGATATTGTTTAACTATTAAAAAAGGAATTAA
66 TAATTTAACTAAATCTATTTCATAAAATTGATATTGTTTAACTATTAAAAAAGGAATTAA
26116603 T
1 T
26116604 TTATTATTTT
Statistics
Matches: 124, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
124 118 0.95
125 6 0.05
ACGTcount: A:0.38, C:0.16, G:0.12, T:0.34
Consensus pattern (125 bp):
TCATGTGGCACAAAATCGACCTTGTTCACCAATAGTCACACAGCCGTATTATTAGACCATGTTAG
TAATTTAACTAAATCTATTTCATAAAATTGATATTGTTTAACTATTAAAAAAGGAATTAA
Found at i:26116776 original size:6 final size:6
Alignment explanation
Indices: 26116765--26116794 Score: 60
Period size: 6 Copynumber: 5.0 Consensus size: 6
26116755 ACTGCTTGTT
26116765 TGGTGA TGGTGA TGGTGA TGGTGA TGGTGA
1 TGGTGA TGGTGA TGGTGA TGGTGA TGGTGA
26116795 GTAGGACCAC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.17, C:0.00, G:0.50, T:0.33
Consensus pattern (6 bp):
TGGTGA
Found at i:26117531 original size:13 final size:14
Alignment explanation
Indices: 26117513--26117544 Score: 57
Period size: 14 Copynumber: 2.4 Consensus size: 14
26117503 ATTTTTAATT
26117513 ATTTAGGG-TTAAG
1 ATTTAGGGTTTAAG
26117526 ATTTAGGGTTTAAG
1 ATTTAGGGTTTAAG
26117540 ATTTA
1 ATTTA
26117545 TGAAATTAAG
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 8 0.44
14 10 0.56
ACGTcount: A:0.31, C:0.00, G:0.25, T:0.44
Consensus pattern (14 bp):
ATTTAGGGTTTAAG
Found at i:26121062 original size:7 final size:7
Alignment explanation
Indices: 26121040--26121082 Score: 59
Period size: 7 Copynumber: 6.1 Consensus size: 7
26121030 TTATATATAC
*
26121040 TACTAAT
1 TACTAAA
*
26121047 TATTAAA
1 TACTAAA
26121054 TACTAAA
1 TACTAAA
26121061 TACTAAA
1 TACTAAA
26121068 TACTAAA
1 TACTAAA
*
26121075 TACGAAA
1 TACTAAA
26121082 T
1 T
26121083 CGACTACGTT
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
7 32 1.00
ACGTcount: A:0.53, C:0.12, G:0.02, T:0.33
Consensus pattern (7 bp):
TACTAAA
Found at i:26123882 original size:21 final size:22
Alignment explanation
Indices: 26123857--26123912 Score: 71
Period size: 21 Copynumber: 2.6 Consensus size: 22
26123847 ACAGCGGTGG
*
26123857 CGGTGAGATTAG-TTACTGTAA
1 CGGTGAGATTAGAATACTGTAA
*
26123878 CGGTGAGATT-GAATACTGTAG
1 CGGTGAGATTAGAATACTGTAA
*
26123899 CAGTGAGATTAGAA
1 CGGTGAGATTAGAA
26123913 ACAATGGTGG
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
20 1 0.03
21 26 0.87
22 3 0.10
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (22 bp):
CGGTGAGATTAGAATACTGTAA
Found at i:26124806 original size:2 final size:2
Alignment explanation
Indices: 26124738--26124797 Score: 120
Period size: 2 Copynumber: 30.0 Consensus size: 2
26124728 TAATATTTAG
26124738 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
26124780 TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA
26124798 AGGATATATG
Statistics
Matches: 58, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 58 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Done.