Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr09 ID=Chr09-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 70713020
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 1142373 characters in sequence are not A, C, G, or T
File 85 of 226
Found at i:30337575 original size:15 final size:16
Alignment explanation
Indices: 30337550--30337583 Score: 52
Period size: 15 Copynumber: 2.2 Consensus size: 16
30337540 TCCGTTTTTC
30337550 TTAGATTAATTTATTT
1 TTAGATTAATTTATTT
*
30337566 TTAG-TTAATTTCTTT
1 TTAGATTAATTTATTT
30337581 TTA
1 TTA
30337584 AATTTAAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 13 0.76
16 4 0.24
ACGTcount: A:0.26, C:0.03, G:0.06, T:0.65
Consensus pattern (16 bp):
TTAGATTAATTTATTT
Found at i:30339294 original size:48 final size:48
Alignment explanation
Indices: 30339223--30339322 Score: 200
Period size: 48 Copynumber: 2.1 Consensus size: 48
30339213 CCTGTATTCC
30339223 AATTAACATACAGACTAGCCTCCAGAACAGTGACGGAGAGCCACAGTG
1 AATTAACATACAGACTAGCCTCCAGAACAGTGACGGAGAGCCACAGTG
30339271 AATTAACATACAGACTAGCCTCCAGAACAGTGACGGAGAGCCACAGTG
1 AATTAACATACAGACTAGCCTCCAGAACAGTGACGGAGAGCCACAGTG
30339319 AATT
1 AATT
30339323 GTATTTGAAG
Statistics
Matches: 52, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
48 52 1.00
ACGTcount: A:0.38, C:0.24, G:0.22, T:0.16
Consensus pattern (48 bp):
AATTAACATACAGACTAGCCTCCAGAACAGTGACGGAGAGCCACAGTG
Found at i:30341645 original size:21 final size:21
Alignment explanation
Indices: 30341602--30341645 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
30341592 ATTGAATAAA
* *
30341602 ATAAAAAATAGTAAAAGACTT
1 ATAAAAAATACTAAAAGAATT
30341623 ATAAATAAATACTAAAA-AATT
1 ATAAA-AAATACTAAAAGAATT
30341644 AT
1 AT
30341646 TTAAATGCAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 10 0.50
22 10 0.50
ACGTcount: A:0.64, C:0.05, G:0.05, T:0.27
Consensus pattern (21 bp):
ATAAAAAATACTAAAAGAATT
Found at i:30342410 original size:298 final size:305
Alignment explanation
Indices: 30341977--30342539 Score: 707
Period size: 298 Copynumber: 1.9 Consensus size: 305
30341967 TTTGTAATTA
* * * *
30341977 AGTATTTTAGTCTTTTCACCTTAAAAGACCGAATAAAAATATGTATATAATAGGATTTGAACCCA
1 AGTATTTTAATCTTTTCACCTTAAAAGAACAAAAAAAAATATGTATATAATAGGATTTGAACCCA
**
30342042 CACCAATTAAAATAGTATGTTTTTAATTTACCACTAATCTAAAGCTTTATTTTAATATTTTTACA
66 CACCAATTAAAATAGTAAATTTTTAATTTACCACTAATCTAAAGCTTTATTTTAATATTTTTACA
* * * *
30342107 CATTTTAATTTTATTAT-ACAACTCTATTACCTCCATTAGTTG-TGTGT-AT-G-TA-TA-TATA
131 CATTTTAATTTTATTATGAC-ACTCTATTACATCCATCAGTTGATATATCATAGTTATTATTATA
* * *
30342165 TTATTAATAAAACCACTGACTGAGTTGGTTTCACATCCAACTGGGTCACCAACTCAATTAGGAAG
195 TTATTAATAAAACCACTAACTGAGTTGGTGTCACATCCAACTAGGTCACCAACTCAATTAGGAAG
30342230 TTATGAGAACGTCCTTCCGTAATAAGAATAAATAATATTATTCAAG
260 TTATGAGAACGTCCTTCCGTAATAAGAATAAATAATATTATTCAAG
* * * * *
30342276 AGTATTTTAATCTTTTCACTTTAAAA-AATAAAAAAAAATATGTATTTGATGGGATTTGAACCCA
1 AGTATTTTAATCTTTTCACCTTAAAAGAACAAAAAAAAATATGTATATAATAGGATTTGAACCCA
** * *
30342340 CACCAATTGCATTAGTAAATTATTTAATTTACCACTCAA-CTAAA-ATCTTATTTT-ATATTTTT
66 CACCAATTAAAATAGTAAATT-TTTAATTTACCACT-AATCTAAAGCT-TTATTTTAATATTTTT
* **
30342402 ATACATTTTAATTTTATTATGGACACTCTATTGTATCCATCAGTTGTATATATCATAGTTTATTA
128 ACACATTTTAATTTTATTAT-GACACTCTATTACATCCATCAGTTG-ATATATCATAG-TTATTA
* * * ***
30342467 TTATTTTATTAATAAAAGCACTAACTGAGTTGGTGTCACATTCAACTAGGTCACCAACTTGGTTA
190 TTATATTATTAATAAAACCACTAACTGAGTTGGTGTCACATCCAACTAGGTCACCAACTCAATTA
30342532 GGAAGTTA
255 GGAAGTTA
30342540 CGGGAATGTC
Statistics
Matches: 220, Mismatches: 31, Indels: 18
0.82 0.12 0.07
Matches are distributed among these distances:
298 75 0.34
299 68 0.31
300 4 0.02
301 3 0.01
302 2 0.01
303 1 0.00
305 2 0.01
306 2 0.01
307 63 0.29
ACGTcount: A:0.36, C:0.14, G:0.11, T:0.39
Consensus pattern (305 bp):
AGTATTTTAATCTTTTCACCTTAAAAGAACAAAAAAAAATATGTATATAATAGGATTTGAACCCA
CACCAATTAAAATAGTAAATTTTTAATTTACCACTAATCTAAAGCTTTATTTTAATATTTTTACA
CATTTTAATTTTATTATGACACTCTATTACATCCATCAGTTGATATATCATAGTTATTATTATAT
TATTAATAAAACCACTAACTGAGTTGGTGTCACATCCAACTAGGTCACCAACTCAATTAGGAAGT
TATGAGAACGTCCTTCCGTAATAAGAATAAATAATATTATTCAAG
Found at i:30345609 original size:21 final size:21
Alignment explanation
Indices: 30345585--30345678 Score: 73
Period size: 21 Copynumber: 4.3 Consensus size: 21
30345575 TGCCTGAAAT
* *
30345585 GACACACGAAATGTCTGATAC
1 GACACACGAAATGCCTAATAC
**
30345606 GACACACGAGGTGCCTAATAC
1 GACACACGAAATGCCTAATAC
**
30345627 GACACACGAGGTGCCTGAAATAC
1 GACACACGAAATGCCT--AATAC
*
30345650 GACACA-TAAAGTGCCTGATATAC
1 GACACACGAAA-TGCCT-A-ATAC
30345673 GACACA
1 GACACA
30345679 TAAATTGCCT
Statistics
Matches: 61, Mismatches: 8, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
21 33 0.54
22 2 0.03
23 26 0.43
ACGTcount: A:0.37, C:0.26, G:0.21, T:0.16
Consensus pattern (21 bp):
GACACACGAAATGCCTAATAC
Found at i:30345664 original size:44 final size:42
Alignment explanation
Indices: 30345561--30345678 Score: 123
Period size: 42 Copynumber: 2.7 Consensus size: 42
30345551 CCTGATCAAT
* *
30345561 ATACGACACATAAGTGCCTGAA-ATGACACACGAAATGTCTG
1 ATACGACACATAAGTGCCTGAATACGACACACGAAATGCCTG
* * **
30345602 ATACGACACACGAGGTGCCT-AATACGACACACGAGGTGCCTG
1 ATACGACACA-TAAGTGCCTGAATACGACACACGAAATGCCTG
30345644 AAATACGACACATAAAGTGCCTGATATACGACACA
1 --ATACGACACAT-AAGTGCCTGA-ATACGACACA
30345679 TAAATTGCCT
Statistics
Matches: 62, Mismatches: 8, Indels: 9
0.78 0.10 0.11
Matches are distributed among these distances:
41 12 0.19
42 22 0.35
44 17 0.27
45 1 0.02
46 10 0.16
ACGTcount: A:0.38, C:0.25, G:0.20, T:0.17
Consensus pattern (42 bp):
ATACGACACATAAGTGCCTGAATACGACACACGAAATGCCTG
Found at i:30345679 original size:23 final size:22
Alignment explanation
Indices: 30345561--30345688 Score: 104
Period size: 23 Copynumber: 5.9 Consensus size: 22
30345551 CCTGATCAAT
30345561 ATACGACACAT-AAGTGCCTGA
1 ATACGACACATAAAGTGCCTGA
* * *
30345582 A-ATGACACACGAAA-TGTCTG-
1 ATACGACACA-TAAAGTGCCTGA
** *
30345602 ATACGACACACGAGGTGCCT-A
1 ATACGACACATAAAGTGCCTGA
** *
30345623 ATACGACACACGAGGTGCCTGAA
1 ATACGACACATAAAGTGCCTG-A
30345646 ATACGACACATAAAGTGCCTGA
1 ATACGACACATAAAGTGCCTGA
*
30345668 TATACGACACATAAATTGCCT
1 -ATACGACACATAAAGTGCCT
30345689 AAACGGTAAA
Statistics
Matches: 87, Mismatches: 12, Indels: 14
0.77 0.11 0.12
Matches are distributed among these distances:
20 9 0.10
21 37 0.43
22 3 0.03
23 38 0.44
ACGTcount: A:0.38, C:0.24, G:0.20, T:0.19
Consensus pattern (22 bp):
ATACGACACATAAAGTGCCTGA
Found at i:30346715 original size:16 final size:16
Alignment explanation
Indices: 30346694--30346728 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
30346684 AACCCTAATT
* *
30346694 TTTCCCGTTTCTTTTC
1 TTTCCCCTTTCCTTTC
30346710 TTTCCCCTTTCCTTTC
1 TTTCCCCTTTCCTTTC
30346726 TTT
1 TTT
30346729 ATTTTTCGTC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.00, C:0.34, G:0.03, T:0.63
Consensus pattern (16 bp):
TTTCCCCTTTCCTTTC
Found at i:30352234 original size:14 final size:14
Alignment explanation
Indices: 30352215--30352244 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
30352205 GCCCGTGTGG
*
30352215 CTCACACGGTCACA
1 CTCACACCGTCACA
30352229 CTCACACCGTCACA
1 CTCACACCGTCACA
30352243 CT
1 CT
30352245 GTTGTGTCCT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.27, C:0.47, G:0.10, T:0.17
Consensus pattern (14 bp):
CTCACACCGTCACA
Found at i:30353388 original size:16 final size:18
Alignment explanation
Indices: 30353358--30353392 Score: 56
Period size: 16 Copynumber: 2.1 Consensus size: 18
30353348 AGGCAGTTGC
30353358 AAACAATTATAAATACAA
1 AAACAATTATAAATACAA
30353376 AAACAATT-T-AATACAA
1 AAACAATTATAAATACAA
30353392 A
1 A
30353393 TAAATTCATT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 8 0.47
17 1 0.06
18 8 0.47
ACGTcount: A:0.66, C:0.11, G:0.00, T:0.23
Consensus pattern (18 bp):
AAACAATTATAAATACAA
Found at i:30353904 original size:17 final size:19
Alignment explanation
Indices: 30353884--30353920 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 19
30353874 AAGACAAACA
30353884 ATAAA-CATATAC-AATGC
1 ATAAACCATATACGAATGC
*
30353901 ATAAACCTTATACGAATGC
1 ATAAACCATATACGAATGC
30353920 A
1 A
30353921 ACATTTTTCA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
17 5 0.29
18 6 0.35
19 6 0.35
ACGTcount: A:0.49, C:0.19, G:0.08, T:0.24
Consensus pattern (19 bp):
ATAAACCATATACGAATGC
Found at i:30357805 original size:2 final size:2
Alignment explanation
Indices: 30357792--30357845 Score: 81
Period size: 2 Copynumber: 27.0 Consensus size: 2
30357782 GATACCCTTT
* * *
30357792 GA GA GA GT GA GA GA GA GA GA GA CA GA GG GA GA GA GA GA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
30357834 GA GA GA GA GA GA
1 GA GA GA GA GA GA
30357846 ACGGAATCTG
Statistics
Matches: 46, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
2 46 1.00
ACGTcount: A:0.46, C:0.02, G:0.50, T:0.02
Consensus pattern (2 bp):
GA
Found at i:30359525 original size:17 final size:17
Alignment explanation
Indices: 30359503--30359564 Score: 72
Period size: 17 Copynumber: 3.5 Consensus size: 17
30359493 TCTTAGAGTC
30359503 CTAATTGTATACAGCTT
1 CTAATTGTATACAGCTT
*
30359520 CTAATTGTGACTTAGAG-TT
1 CTAATTGT-A--TACAGCTT
30359539 CTAATTGTATACAGCTT
1 CTAATTGTATACAGCTT
*
30359556 TTAATTGTA
1 CTAATTGTA
30359565 GCCCTTGATG
Statistics
Matches: 38, Mismatches: 3, Indels: 8
0.78 0.06 0.16
Matches are distributed among these distances:
16 4 0.11
17 18 0.47
18 2 0.05
19 10 0.26
20 4 0.11
ACGTcount: A:0.29, C:0.13, G:0.15, T:0.44
Consensus pattern (17 bp):
CTAATTGTATACAGCTT
Found at i:30359543 original size:36 final size:36
Alignment explanation
Indices: 30359494--30359563 Score: 122
Period size: 36 Copynumber: 1.9 Consensus size: 36
30359484 ATTATGTAAT
30359494 CTTAGAGTCCTAATTGTATACAGCTTCTAATTGTGA
1 CTTAGAGTCCTAATTGTATACAGCTTCTAATTGTGA
* *
30359530 CTTAGAGTTCTAATTGTATACAGCTTTTAATTGT
1 CTTAGAGTCCTAATTGTATACAGCTTCTAATTGT
30359564 AGCCCTTGAT
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
36 32 1.00
ACGTcount: A:0.27, C:0.14, G:0.16, T:0.43
Consensus pattern (36 bp):
CTTAGAGTCCTAATTGTATACAGCTTCTAATTGTGA
Found at i:30364641 original size:17 final size:17
Alignment explanation
Indices: 30364619--30364682 Score: 58
Period size: 17 Copynumber: 3.6 Consensus size: 17
30364609 AATCTTAGAG
30364619 TTCTAATTGTATACAGC
1 TTCTAATTGTATACAGC
* *
30364636 TTCTAATTGTGT-CTTAGAG
1 TTCTAATTGTATAC--AG-C
*
30364655 TTCTAATTGTATACAAC
1 TTCTAATTGTATACAGC
*
30364672 TTTTAATTGTA
1 TTCTAATTGTA
30364683 GCCCTTGATG
Statistics
Matches: 37, Mismatches: 6, Indels: 8
0.73 0.12 0.16
Matches are distributed among these distances:
16 1 0.03
17 21 0.57
18 3 0.08
19 11 0.30
20 1 0.03
ACGTcount: A:0.28, C:0.12, G:0.12, T:0.47
Consensus pattern (17 bp):
TTCTAATTGTATACAGC
Found at i:30364651 original size:36 final size:36
Alignment explanation
Indices: 30364611--30364681 Score: 124
Period size: 36 Copynumber: 2.0 Consensus size: 36
30364601 AATTATGTAA
*
30364611 TCTTAGAGTTCTAATTGTATACAGCTTCTAATTGTG
1 TCTTAGAGTTCTAATTGTATACAACTTCTAATTGTG
*
30364647 TCTTAGAGTTCTAATTGTATACAACTTTTAATTGT
1 TCTTAGAGTTCTAATTGTATACAACTTCTAATTGT
30364682 AGCCCTTGAT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
36 33 1.00
ACGTcount: A:0.27, C:0.13, G:0.14, T:0.46
Consensus pattern (36 bp):
TCTTAGAGTTCTAATTGTATACAACTTCTAATTGTG
Found at i:30364660 original size:19 final size:19
Alignment explanation
Indices: 30364610--30364666 Score: 66
Period size: 19 Copynumber: 3.1 Consensus size: 19
30364600 TAATTATGTA
30364610 ATCTTAGAGTTCTAATTGT
1 ATCTTAGAGTTCTAATTGT
*
30364629 ATAC--AG-CTTCTAATTGT
1 AT-CTTAGAGTTCTAATTGT
*
30364646 GTCTTAGAGTTCTAATTGT
1 ATCTTAGAGTTCTAATTGT
30364665 AT
1 AT
30364667 ACAACTTTTA
Statistics
Matches: 30, Mismatches: 4, Indels: 8
0.71 0.10 0.19
Matches are distributed among these distances:
16 1 0.03
17 11 0.37
18 4 0.13
19 13 0.43
20 1 0.03
ACGTcount: A:0.26, C:0.12, G:0.16, T:0.46
Consensus pattern (19 bp):
ATCTTAGAGTTCTAATTGT
Found at i:30364947 original size:49 final size:48
Alignment explanation
Indices: 30364875--30364971 Score: 167
Period size: 49 Copynumber: 2.0 Consensus size: 48
30364865 TGAGGGAATT
* *
30364875 CTGTTGAATCCTTTATCATTGCGAGATTAGGTTGACTTAGGTGTTTTTA
1 CTGTTGAATCCGTTATCATTGCGAG-TTAGGTTGACTTAGGCGTTTTTA
30364924 CTGTTGAATCCGTTATCATTGCGAGTTAGGTTGACTTAGGCGTTTTTA
1 CTGTTGAATCCGTTATCATTGCGAGTTAGGTTGACTTAGGCGTTTTTA
30364972 AGCAAAGAAA
Statistics
Matches: 46, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
48 22 0.48
49 24 0.52
ACGTcount: A:0.20, C:0.13, G:0.24, T:0.43
Consensus pattern (48 bp):
CTGTTGAATCCGTTATCATTGCGAGTTAGGTTGACTTAGGCGTTTTTA
Found at i:30365904 original size:2 final size:2
Alignment explanation
Indices: 30365897--30365934 Score: 67
Period size: 2 Copynumber: 19.0 Consensus size: 2
30365887 TTTTAGGGGC
*
30365897 AT AT AT AT GT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
30365935 CACTTAATAT
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (2 bp):
AT
Found at i:30366293 original size:22 final size:22
Alignment explanation
Indices: 30366249--30366293 Score: 65
Period size: 22 Copynumber: 2.0 Consensus size: 22
30366239 TTTTTTTATT
*
30366249 TAATTTTTATAGTTTTTAAAGA
1 TAATTTTTATAGATTTTAAAGA
30366271 TAATTTTTATA-ATTTTAATAGA
1 TAATTTTTATAGATTTTAA-AGA
30366293 T
1 T
30366294 TTATGATTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 6 0.29
22 15 0.71
ACGTcount: A:0.38, C:0.00, G:0.07, T:0.56
Consensus pattern (22 bp):
TAATTTTTATAGATTTTAAAGA
Found at i:30366456 original size:23 final size:22
Alignment explanation
Indices: 30366411--30366472 Score: 72
Period size: 23 Copynumber: 2.8 Consensus size: 22
30366401 TTTTAAGTCC
* *
30366411 AATTTAAT-AATTTTAAAATCA
1 AATTAAATCAATTTTAAAAACA
30366432 AATTAAATCAATTTTCAAAAACA
1 AATTAAATCAATTTT-AAAAACA
*
30366455 AATCAAATCAAATTTTAA
1 AATTAAATC-AATTTTAA
30366473 CAAATTATTT
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
21 7 0.20
22 6 0.17
23 16 0.46
24 6 0.17
ACGTcount: A:0.55, C:0.10, G:0.00, T:0.35
Consensus pattern (22 bp):
AATTAAATCAATTTTAAAAACA
Found at i:30366745 original size:28 final size:28
Alignment explanation
Indices: 30366691--30366745 Score: 67
Period size: 28 Copynumber: 2.0 Consensus size: 28
30366681 CTCTTATTTT
* *
30366691 TTAGTTAATTATTAATTTATAATTTTAA
1 TTAGATAATTATTAATTTATAAATTTAA
*
30366719 TTAGATAATTA-TAATTTTTAAAATTTA
1 TTAGATAATTATTAATTTAT-AAATTTA
30366746 GATAAAATTT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
27 7 0.30
28 16 0.70
ACGTcount: A:0.42, C:0.00, G:0.04, T:0.55
Consensus pattern (28 bp):
TTAGATAATTATTAATTTATAAATTTAA
Found at i:30369352 original size:40 final size:40
Alignment explanation
Indices: 30369304--30369440 Score: 163
Period size: 40 Copynumber: 3.5 Consensus size: 40
30369294 AACACTGGCA
*
30369304 GCTTGTCTACAATACTAGCAGTTTATCTGCATTACTGGTG
1 GCTTGTCTACAATACTGGCAGTTTATCTGCATTACTGGTG
* * * *
30369344 GTTTGTCTACATTACTGGCAGCTTGTCTGCATTACTGGTG
1 GCTTGTCTACAATACTGGCAGTTTATCTGCATTACTGGTG
* *
30369384 GCTTGT-TCACATTTA-TGGCAGTTTATCTGAATTACTGGTG
1 GCTTGTCT-ACA-ATACTGGCAGTTTATCTGCATTACTGGTG
*
30369424 GCTTGTCCACAA-ACTGG
1 GCTTGTCTACAATACTGG
30369441 TGTGTAATTG
Statistics
Matches: 82, Mismatches: 11, Indels: 9
0.80 0.11 0.09
Matches are distributed among these distances:
38 1 0.01
39 4 0.05
40 74 0.90
41 3 0.04
ACGTcount: A:0.20, C:0.20, G:0.23, T:0.38
Consensus pattern (40 bp):
GCTTGTCTACAATACTGGCAGTTTATCTGCATTACTGGTG
Found at i:30369387 original size:20 final size:20
Alignment explanation
Indices: 30369329--30369389 Score: 86
Period size: 20 Copynumber: 3.0 Consensus size: 20
30369319 TAGCAGTTTA
*
30369329 TCTGCATTACTGGTGGTTTG
1 TCTGCATTACTGGTGGCTTG
* **
30369349 TCTACATTACTGGCAGCTTG
1 TCTGCATTACTGGTGGCTTG
30369369 TCTGCATTACTGGTGGCTTG
1 TCTGCATTACTGGTGGCTTG
30369389 T
1 T
30369390 TCACATTTAT
Statistics
Matches: 34, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 34 1.00
ACGTcount: A:0.13, C:0.20, G:0.26, T:0.41
Consensus pattern (20 bp):
TCTGCATTACTGGTGGCTTG
Found at i:30369396 original size:20 final size:20
Alignment explanation
Indices: 30369273--30369389 Score: 81
Period size: 20 Copynumber: 5.8 Consensus size: 20
30369263 AGTTTACTTG
* *
30369273 CATTTCTGGTGGCTTGTCCA
1 CATTACTGGTGGCTTGTCTA
** **
30369293 CAACACTGGCAGCTTGTCTA
1 CATTACTGGTGGCTTGTCTA
* * ** * * *
30369313 CAATACTAGCAGTTTATCTG
1 CATTACTGGTGGCTTGTCTA
*
30369333 CATTACTGGTGGTTTGTCTA
1 CATTACTGGTGGCTTGTCTA
** *
30369353 CATTACTGGCAGCTTGTCTG
1 CATTACTGGTGGCTTGTCTA
30369373 CATTACTGGTGGCTTGT
1 CATTACTGGTGGCTTGT
30369390 TCACATTTAT
Statistics
Matches: 74, Mismatches: 23, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
20 74 1.00
ACGTcount: A:0.18, C:0.22, G:0.23, T:0.37
Consensus pattern (20 bp):
CATTACTGGTGGCTTGTCTA
Found at i:30375522 original size:31 final size:31
Alignment explanation
Indices: 30375487--30375552 Score: 96
Period size: 31 Copynumber: 2.1 Consensus size: 31
30375477 TTTTTTAGCT
*
30375487 AAATTTGACCATAAATATTTTAAAAAGAGTC
1 AAATTTGACCATAAACATTTTAAAAAGAGTC
* * *
30375518 AAATTTGACTATAAACCTTTTAAAAGGAGTC
1 AAATTTGACCATAAACATTTTAAAAAGAGTC
30375549 AAAT
1 AAAT
30375553 AGTTGCTTTT
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.47, C:0.11, G:0.11, T:0.32
Consensus pattern (31 bp):
AAATTTGACCATAAACATTTTAAAAAGAGTC
Found at i:30375667 original size:8 final size:8
Alignment explanation
Indices: 30375647--30375699 Score: 61
Period size: 9 Copynumber: 6.1 Consensus size: 8
30375637 ATGCTATTTT
30375647 TTTTTAAA
1 TTTTTAAA
30375655 TTTTTTAAA
1 -TTTTTAAA
30375664 TTTTTAAA
1 TTTTTAAA
30375672 TTTTTGAATA
1 TTTTT-AA-A
*
30375682 TTTTTATCA
1 TTTTTA-AA
30375691 TTTTTAAA
1 TTTTTAAA
30375699 T
1 T
30375700 ATTTGTTGAC
Statistics
Matches: 39, Mismatches: 2, Indels: 7
0.81 0.04 0.15
Matches are distributed among these distances:
8 15 0.38
9 18 0.46
10 6 0.15
ACGTcount: A:0.32, C:0.02, G:0.02, T:0.64
Consensus pattern (8 bp):
TTTTTAAA
Found at i:30375669 original size:17 final size:18
Alignment explanation
Indices: 30375647--30375703 Score: 71
Period size: 17 Copynumber: 3.2 Consensus size: 18
30375637 ATGCTATTTT
*
30375647 TTTTTAAATTTTTTAA-A
1 TTTTTAAATTTTTGAATA
30375664 TTTTTAAATTTTTGAATA
1 TTTTTAAATTTTTGAATA
* *
30375682 TTTTTATCATTTTTAAATA
1 TTTTTA-AATTTTTGAATA
30375701 TTT
1 TTT
30375704 GTTGACGTTA
Statistics
Matches: 35, Mismatches: 3, Indels: 2
0.88 0.08 0.05
Matches are distributed among these distances:
17 15 0.43
18 7 0.20
19 13 0.37
ACGTcount: A:0.32, C:0.02, G:0.02, T:0.65
Consensus pattern (18 bp):
TTTTTAAATTTTTGAATA
Found at i:30378124 original size:25 final size:26
Alignment explanation
Indices: 30378096--30378155 Score: 86
Period size: 26 Copynumber: 2.3 Consensus size: 26
30378086 GAAAGTTCCG
*
30378096 AAGAGCCATTAA-CAGGAAGCTTACA
1 AAGAGCCATTAATCAGGAAGCTCACA
* *
30378121 AAGAGCCTTTAATCGGGAAGCTCACA
1 AAGAGCCATTAATCAGGAAGCTCACA
30378147 AAGAGCCAT
1 AAGAGCCAT
30378156 ATATCGGGAC
Statistics
Matches: 30, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
25 11 0.37
26 19 0.63
ACGTcount: A:0.40, C:0.22, G:0.22, T:0.17
Consensus pattern (26 bp):
AAGAGCCATTAATCAGGAAGCTCACA
Found at i:30378161 original size:26 final size:25
Alignment explanation
Indices: 30378096--30378164 Score: 84
Period size: 26 Copynumber: 2.7 Consensus size: 25
30378086 GAAAGTTCCG
* * *
30378096 AAGAGCCATTAACAGGAAGCTTACA
1 AAGAGCCATTATCGGGAAGCTCACA
*
30378121 AAGAGCCTTTAATCGGGAAGCTCACA
1 AAGAGCCATT-ATCGGGAAGCTCACA
30378147 AAGAGCCATATATCGGGA
1 AAGAGCCAT-TATCGGGA
30378165 CGCTTATAAG
Statistics
Matches: 37, Mismatches: 5, Indels: 3
0.82 0.11 0.07
Matches are distributed among these distances:
25 9 0.24
26 27 0.73
27 1 0.03
ACGTcount: A:0.39, C:0.20, G:0.23, T:0.17
Consensus pattern (25 bp):
AAGAGCCATTATCGGGAAGCTCACA
Found at i:30379723 original size:26 final size:27
Alignment explanation
Indices: 30379663--30379723 Score: 79
Period size: 26 Copynumber: 2.3 Consensus size: 27
30379653 CTATGTTCAT
30379663 GTACCAAAGTGAACAAAAAAAGTACAA
1 GTACCAAAGTGAACAAAAAAAGTACAA
* * * *
30379690 GTATCAAAGTGAA-GAAAAAAGTATAG
1 GTACCAAAGTGAACAAAAAAAGTACAA
30379716 GTACCAAA
1 GTACCAAA
30379724 ATAAACTTAA
Statistics
Matches: 29, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
26 17 0.59
27 12 0.41
ACGTcount: A:0.56, C:0.11, G:0.18, T:0.15
Consensus pattern (27 bp):
GTACCAAAGTGAACAAAAAAAGTACAA
Found at i:30379864 original size:6 final size:6
Alignment explanation
Indices: 30379853--30379895 Score: 79
Period size: 6 Copynumber: 7.3 Consensus size: 6
30379843 TAACCAACTT
30379853 TTAGAA TTAGAA TTAGAA TTAGAA TTAGAA TTAGAA TTA-AA TT
1 TTAGAA TTAGAA TTAGAA TTAGAA TTAGAA TTAGAA TTAGAA TT
30379896 GATAAATTTT
Statistics
Matches: 37, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
5 4 0.11
6 33 0.89
ACGTcount: A:0.49, C:0.00, G:0.14, T:0.37
Consensus pattern (6 bp):
TTAGAA
Found at i:30381811 original size:15 final size:15
Alignment explanation
Indices: 30381784--30381869 Score: 100
Period size: 15 Copynumber: 5.7 Consensus size: 15
30381774 AAAATTTAGT
* *
30381784 ACTTAAATTTTCAAA
1 ACTTAATTTTTCAAC
*
30381799 ACATAATTTTTCAAC
1 ACTTAATTTTTCAAC
* *
30381814 ACTTATTTTTTCAGC
1 ACTTAATTTTTCAAC
30381829 ACTTAATTTTTCAAC
1 ACTTAATTTTTCAAC
* *
30381844 ACTTATTTTTTCAGC
1 ACTTAATTTTTCAAC
30381859 ACTTAAATTTT
1 ACTT-AATTTT
30381870 AGTTTAGTAA
Statistics
Matches: 59, Mismatches: 11, Indels: 1
0.83 0.15 0.01
Matches are distributed among these distances:
15 54 0.92
16 5 0.08
ACGTcount: A:0.33, C:0.17, G:0.02, T:0.48
Consensus pattern (15 bp):
ACTTAATTTTTCAAC
Found at i:30381849 original size:30 final size:30
Alignment explanation
Indices: 30381802--30381869 Score: 127
Period size: 30 Copynumber: 2.3 Consensus size: 30
30381792 TTTCAAAACA
30381802 TAATTTTTCAACACTTATTTTTTCAGCACT
1 TAATTTTTCAACACTTATTTTTTCAGCACT
30381832 TAATTTTTCAACACTTATTTTTTCAGCACT
1 TAATTTTTCAACACTTATTTTTTCAGCACT
*
30381862 TAAATTTT
1 TAATTTTT
30381870 AGTTTAGTAA
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 37 1.00
ACGTcount: A:0.28, C:0.18, G:0.03, T:0.51
Consensus pattern (30 bp):
TAATTTTTCAACACTTATTTTTTCAGCACT
Found at i:30392954 original size:25 final size:25
Alignment explanation
Indices: 30392902--30392956 Score: 67
Period size: 25 Copynumber: 2.2 Consensus size: 25
30392892 TTACCGATTC
* *
30392902 CAGCTTTTATGAGCTTATCGATACT
1 CAGCTTGTATGAGCTTATCCATACT
*
30392927 CAGCTTGTATGAGCTTA-CCATTATT
1 CAGCTTGTATGAGCTTATCCA-TACT
30392952 CAGCT
1 CAGCT
30392957 AAGAAGAGCT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
24 2 0.08
25 24 0.92
ACGTcount: A:0.24, C:0.22, G:0.16, T:0.38
Consensus pattern (25 bp):
CAGCTTGTATGAGCTTATCCATACT
Found at i:30394734 original size:20 final size:20
Alignment explanation
Indices: 30394709--30394749 Score: 73
Period size: 20 Copynumber: 2.0 Consensus size: 20
30394699 ATACATGCCA
*
30394709 TTTTATAACTTGTGATAGTG
1 TTTTATAACCTGTGATAGTG
30394729 TTTTATAACCTGTGATAGTG
1 TTTTATAACCTGTGATAGTG
30394749 T
1 T
30394750 GATGTCTCCT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.24, C:0.07, G:0.20, T:0.49
Consensus pattern (20 bp):
TTTTATAACCTGTGATAGTG
Found at i:30405807 original size:27 final size:27
Alignment explanation
Indices: 30405763--30405921 Score: 126
Period size: 27 Copynumber: 5.9 Consensus size: 27
30405753 TTTCATCTCC
** *
30405763 TAGGGGTATAACAATCATTTTACCTTA
1 TAGGGGTATTTCAGTCATTTTACCTTA
**
30405790 TAGGGGTATTTCAGTCATACTA-CTCTA
1 TAGGGGTATTTCAGTCATTTTACCT-TA
* * * * *
30405817 TGGGGGTCTTTCGGTTATTTTACCCTA
1 TAGGGGTATTTCAGTCATTTTACCTTA
* * ** *
30405844 TAAGAGTATTTTGGTCATTTTACCCTA
1 TAGGGGTATTTCAGTCATTTTACCTTA
30405871 T-GAGGGTATTTCAGTCATTTTACCTTA
1 TAG-GGGTATTTCAGTCATTTTACCTTA
*
30405898 -AGGAGGTATTTCGGTCATTTTACC
1 TAGG-GGTATTTCAGTCATTTTACC
30405922 CTATTTTGGG
Statistics
Matches: 103, Mismatches: 24, Indels: 10
0.75 0.18 0.07
Matches are distributed among these distances:
26 3 0.03
27 99 0.96
28 1 0.01
ACGTcount: A:0.23, C:0.16, G:0.19, T:0.41
Consensus pattern (27 bp):
TAGGGGTATTTCAGTCATTTTACCTTA
Found at i:30405837 original size:54 final size:54
Alignment explanation
Indices: 30405777--30405925 Score: 156
Period size: 54 Copynumber: 2.8 Consensus size: 54
30405767 GGTATAACAA
* * * * *
30405777 TCATTTTACCTTATAGGGGTATTTCAGTCATACTACTCTATGGGGGTCTTTCGG
1 TCATTTTACCTTATAGGGGTATTTCGGTCATACTACCCTATGAGGGTATTTCAG
* * * * * **
30405831 TTATTTTACCCTATAAGAGTATTTTGGTCATTTTACCCTATGAGGGTATTTCAG
1 TCATTTTACCTTATAGGGGTATTTCGGTCATACTACCCTATGAGGGTATTTCAG
**
30405885 TCATTTTACCTTA-AGGAGGTATTTCGGTCATTTTACCCTAT
1 TCATTTTACCTTATAGG-GGTATTTCGGTCATACTACCCTAT
30405926 TTTGGGGTCT
Statistics
Matches: 77, Mismatches: 17, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
53 2 0.03
54 75 0.97
ACGTcount: A:0.21, C:0.17, G:0.18, T:0.43
Consensus pattern (54 bp):
TCATTTTACCTTATAGGGGTATTTCGGTCATACTACCCTATGAGGGTATTTCAG
Found at i:30405885 original size:81 final size:81
Alignment explanation
Indices: 30405777--30405925 Score: 203
Period size: 81 Copynumber: 1.8 Consensus size: 81
30405767 GGTATAACAA
* * * * *
30405777 TCATTTTACCTTATAGGGGTATTTCAGTCATACTA-CTCTATGGGGGTCTTTCGGTTATTTTACC
1 TCATTTTACCCTATAGGGGTATTTCAGTCATACTACCT-TAAGGAGGTATTTCGGTCATTTTACC
30405841 CTATAAGAGTATTTTGG
65 CTATAAGAGTATTTTGG
**
30405858 TCATTTTACCCTAT-GAGGGTATTTCAGTCATTTTACCTTAAGGAGGTATTTCGGTCATTTTACC
1 TCATTTTACCCTATAG-GGGTATTTCAGTCATACTACCTTAAGGAGGTATTTCGGTCATTTTACC
30405922 CTAT
65 CTAT
30405926 TTTGGGGTCT
Statistics
Matches: 59, Mismatches: 7, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
80 1 0.02
81 56 0.95
82 2 0.03
ACGTcount: A:0.21, C:0.17, G:0.18, T:0.43
Consensus pattern (81 bp):
TCATTTTACCCTATAGGGGTATTTCAGTCATACTACCTTAAGGAGGTATTTCGGTCATTTTACCC
TATAAGAGTATTTTGG
Found at i:30414516 original size:40 final size:40
Alignment explanation
Indices: 30414461--30414668 Score: 195
Period size: 40 Copynumber: 5.2 Consensus size: 40
30414451 CGAGCCATAC
* *
30414461 CTACTGAAACGTATGCGCTTTCGAGCAATACCGACTAAAT
1 CTACTGAAACGTATGCGCTTTCGAGCCATACCTACTAAAT
* * *
30414501 CTACTGAAATGTATGCACTTTTGAGCCATACCTACTAAAT
1 CTACTGAAACGTATGCGCTTTCGAGCCATACCTACTAAAT
* * * * **
30414541 CTATTGAAACGTATGTGCTTTCAAGCGA-ACCTACTGGAT
1 CTACTGAAACGTATGCGCTTTCGAGCCATACCTACTAAAT
* * * * *
30414580 CTATTGAAACGCATGCGCTTTTGAGCCATACTTACTGAAT
1 CTACTGAAACGTATGCGCTTTCGAGCCATACCTACTAAAT
** * * *
30414620 CTACTGAAGTGTAGGCGCTTTCGAGCCGTACTTAC-AGAAT
1 CTACTGAAACGTATGCGCTTTCGAGCCATACCTACTA-AAT
*
30414660 CTATTGAAA
1 CTACTGAAA
30414669 GGAATGCTCT
Statistics
Matches: 135, Mismatches: 31, Indels: 4
0.79 0.18 0.02
Matches are distributed among these distances:
39 32 0.24
40 103 0.76
ACGTcount: A:0.30, C:0.22, G:0.18, T:0.30
Consensus pattern (40 bp):
CTACTGAAACGTATGCGCTTTCGAGCCATACCTACTAAAT
Found at i:30414603 original size:79 final size:80
Alignment explanation
Indices: 30414461--30414641 Score: 211
Period size: 79 Copynumber: 2.3 Consensus size: 80
30414451 CGAGCCATAC
* * *
30414461 CTACTGAAACGTATGCGCTTTCGAGCAATACCGACTAAATCTACTGAAATGTATGCACTTTTGAG
1 CTACTGAAACGTATGCGCTTTCAAGCAATACCGACTAAATCTACTGAAACGCATGCACTTTTGAG
30414526 CCATACCTACTAAAT
66 CCATACCTACTAAAT
* * * * ** * *
30414541 CTATTGAAACGTATGTGCTTTCAAGCGA-ACCTACTGGATCTATTGAAACGCATGCGCTTTTGAG
1 CTACTGAAACGTATGCGCTTTCAAGCAATACCGACTAAATCTACTGAAACGCATGCACTTTTGAG
* *
30414605 CCATACTTACTGAAT
66 CCATACCTACTAAAT
** *
30414620 CTACTGAAGTGTAGGCGCTTTC
1 CTACTGAAACGTATGCGCTTTC
30414642 GAGCCGTACT
Statistics
Matches: 83, Mismatches: 18, Indels: 1
0.81 0.18 0.01
Matches are distributed among these distances:
79 59 0.71
80 24 0.29
ACGTcount: A:0.29, C:0.23, G:0.18, T:0.30
Consensus pattern (80 bp):
CTACTGAAACGTATGCGCTTTCAAGCAATACCGACTAAATCTACTGAAACGCATGCACTTTTGAG
CCATACCTACTAAAT
Found at i:30416881 original size:17 final size:17
Alignment explanation
Indices: 30416859--30416892 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
30416849 TAACTAAAGT
30416859 TGAGATTTAATAATTTA
1 TGAGATTTAATAATTTA
30416876 TGAGATTTAATAATTTA
1 TGAGATTTAATAATTTA
30416893 CATTTCTAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.41, C:0.00, G:0.12, T:0.47
Consensus pattern (17 bp):
TGAGATTTAATAATTTA
Found at i:30419629 original size:11 final size:11
Alignment explanation
Indices: 30419613--30419638 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
30419603 GAGGTATGTT
30419613 ATTTTGATTAA
1 ATTTTGATTAA
30419624 ATTTTGATTAA
1 ATTTTGATTAA
30419635 ATTT
1 ATTT
30419639 ATGGAGTTGT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.35, C:0.00, G:0.08, T:0.58
Consensus pattern (11 bp):
ATTTTGATTAA
Found at i:30426212 original size:23 final size:23
Alignment explanation
Indices: 30426185--30426283 Score: 162
Period size: 23 Copynumber: 4.3 Consensus size: 23
30426175 AGTGTTATTG
*
30426185 ATCAGTGGTAGCTTCGGCTACGT
1 ATCAGTGGTAGCTTCGGCTACAT
*
30426208 TTCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
*
30426231 TTCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
*
30426254 AACAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
30426277 ATCAGTG
1 ATCAGTG
30426284 TTGCACTTAT
Statistics
Matches: 71, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
23 71 1.00
ACGTcount: A:0.20, C:0.21, G:0.27, T:0.31
Consensus pattern (23 bp):
ATCAGTGGTAGCTTCGGCTACAT
Found at i:30431194 original size:23 final size:23
Alignment explanation
Indices: 30431163--30431207 Score: 56
Period size: 24 Copynumber: 1.9 Consensus size: 23
30431153 TACAAACAAC
30431163 ATTACACA-TATCAACAAGCCATA
1 ATTACACATTA-CAACAAGCCATA
*
30431186 ATTAGACATTCACAACAAGCCA
1 ATTACACATT-ACAACAAGCCA
30431208 AAATAAGTGG
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
23 7 0.37
24 11 0.58
25 1 0.05
ACGTcount: A:0.47, C:0.27, G:0.07, T:0.20
Consensus pattern (23 bp):
ATTACACATTACAACAAGCCATA
Found at i:30432314 original size:33 final size:32
Alignment explanation
Indices: 30432269--30432429 Score: 142
Period size: 33 Copynumber: 4.8 Consensus size: 32
30432259 ACATTCGTAG
* * *
30432269 TGCCATAACCCAGTTATGATCTTATCATCAAAA
1 TGCCATAGCCCAGCTATGGTCTTA-CATCAAAA
*
30432302 TGCCATAGCCCAGCTATGGTCTTACATATAAACA
1 TGCCATAGCCCAGCTATGGTCTTACAT-CAAA-A
* * * * * *
30432336 CTGCCATGGTCCAACCATGGTCTTACGTTCATAA
1 -TGCCATAGCCCAGCTATGGTCTTAC-ATCAAAA
* * *
30432370 TGTCATAACCCAGTTATGGTCTTATCATCAAAA
1 TGCCATAGCCCAGCTATGGTCTTA-CATCAAAA
*
30432403 TGCCATAGCCCAGCTATGGTTTTACAT
1 TGCCATAGCCCAGCTATGGTCTTACAT
30432430 TTAAACACTG
Statistics
Matches: 99, Mismatches: 24, Indels: 11
0.74 0.18 0.08
Matches are distributed among these distances:
32 6 0.06
33 66 0.67
34 3 0.03
35 23 0.23
36 1 0.01
ACGTcount: A:0.30, C:0.25, G:0.14, T:0.30
Consensus pattern (32 bp):
TGCCATAGCCCAGCTATGGTCTTACATCAAAA
Found at i:30432450 original size:101 final size:101
Alignment explanation
Indices: 30432269--30432495 Score: 391
Period size: 101 Copynumber: 2.2 Consensus size: 101
30432259 ACATTCGTAG
*
30432269 TGCCATAACCCAGTTATGATCTTATCATCAAAATGCCATAGCCCAGCTATGGTCTTACATATAAA
1 TGCCATAACCCAGTTATGGTCTTATCATCAAAATGCCATAGCCCAGCTATGGTCTTACATATAAA
* *
30432334 CACTGCCATGGTCCAACCATGGTCTTACGTTCATAA
66 CACTGCCATGATCCAACCATAGTCTTACGTTCATAA
* * *
30432370 TGTCATAACCCAGTTATGGTCTTATCATCAAAATGCCATAGCCCAGCTATGGTTTTACATTTAAA
1 TGCCATAACCCAGTTATGGTCTTATCATCAAAATGCCATAGCCCAGCTATGGTCTTACATATAAA
*
30432435 CACTGCCATGATCCAACCATAGTCTTACGTTCATAG
66 CACTGCCATGATCCAACCATAGTCTTACGTTCATAA
30432471 TGCCATAACCCAGTTATGGTCTTAT
1 TGCCATAACCCAGTTATGGTCTTAT
30432496 TTGTCAATTC
Statistics
Matches: 118, Mismatches: 8, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
101 118 1.00
ACGTcount: A:0.30, C:0.26, G:0.14, T:0.31
Consensus pattern (101 bp):
TGCCATAACCCAGTTATGGTCTTATCATCAAAATGCCATAGCCCAGCTATGGTCTTACATATAAA
CACTGCCATGATCCAACCATAGTCTTACGTTCATAA
Found at i:30432493 original size:33 final size:33
Alignment explanation
Indices: 30432269--30432494 Score: 116
Period size: 33 Copynumber: 6.7 Consensus size: 33
30432259 ACATTCGTAG
* * * *
30432269 TGCCATAACCCAGTTATGATCTTATC-ATCAAAA
1 TGCCATAACCCAGCTATGGTCTTA-CGTTCATAA
* * *
30432302 TGCCATAGCCCAGCTATGGTCTTACATAT-AAACA
1 TGCCATAACCCAGCTATGGTCTTACGT-TCATA-A
*** * *
30432336 CTGCCATGGTCCAACCATGGTCTTACGTTCATAA
1 -TGCCATAACCCAGCTATGGTCTTACGTTCATAA
* * * *
30432370 TGTCATAACCCAGTTATGGTCTTATC-ATCAAAA
1 TGCCATAACCCAGCTATGGTCTTA-CGTTCATAA
* * * * *
30432403 TGCCATAGCCCAGCTATGGTTTTACATTTAAACA
1 TGCCATAACCCAGCTATGGTCTTACGTTCATA-A
* * * * * *
30432437 CTGCCATGATCCAACCATAGTCTTACGTTCATAG
1 -TGCCATAACCCAGCTATGGTCTTACGTTCATAA
*
30432471 TGCCATAACCCAGTTATGGTCTTA
1 TGCCATAACCCAGCTATGGTCTTA
30432495 TTTGTCAATT
Statistics
Matches: 142, Mismatches: 42, Indels: 18
0.70 0.21 0.09
Matches are distributed among these distances:
32 2 0.01
33 88 0.62
34 6 0.04
35 46 0.32
ACGTcount: A:0.30, C:0.26, G:0.14, T:0.31
Consensus pattern (33 bp):
TGCCATAACCCAGCTATGGTCTTACGTTCATAA
Found at i:30438837 original size:3 final size:3
Alignment explanation
Indices: 30438831--30438865 Score: 70
Period size: 3 Copynumber: 11.7 Consensus size: 3
30438821 AGCAAAGTCG
30438831 TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TC
1 TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TC
30438866 GTAATCTGCA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.31, C:0.34, G:0.00, T:0.34
Consensus pattern (3 bp):
TCA
Found at i:30440690 original size:23 final size:22
Alignment explanation
Indices: 30440655--30440698 Score: 54
Period size: 23 Copynumber: 2.0 Consensus size: 22
30440645 AAAAAATAGT
30440655 TAAATATTAAATTCATATAAATA
1 TAAATATTAAATTCAT-TAAATA
*
30440678 TAAATTATT-AATTTATTAAAT
1 TAAA-TATTAAATTCATTAAAT
30440699 TTTATATAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
22 5 0.26
23 10 0.53
24 4 0.21
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.45
Consensus pattern (22 bp):
TAAATATTAAATTCATTAAATA
Found at i:30440907 original size:2 final size:2
Alignment explanation
Indices: 30440845--30440890 Score: 92
Period size: 2 Copynumber: 23.0 Consensus size: 2
30440835 AATAATATCT
30440845 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
30440887 TA TA
1 TA TA
30440891 CATGGTAATT
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 44 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:30445817 original size:29 final size:29
Alignment explanation
Indices: 30445777--30445835 Score: 91
Period size: 29 Copynumber: 2.0 Consensus size: 29
30445767 TTATGGAAAA
* * *
30445777 GGTGGAGAACTTTTTCGTTGAGAGTTCGT
1 GGTGAAGAACTTATTCGTTGAGAATTCGT
30445806 GGTGAAGAACTTATTCGTTGAGAATTCGT
1 GGTGAAGAACTTATTCGTTGAGAATTCGT
30445835 G
1 G
30445836 TCAATGTGGA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 27 1.00
ACGTcount: A:0.22, C:0.10, G:0.32, T:0.36
Consensus pattern (29 bp):
GGTGAAGAACTTATTCGTTGAGAATTCGT
Found at i:30446637 original size:17 final size:17
Alignment explanation
Indices: 30446615--30446647 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
30446605 ATATTTAATA
30446615 TATATTTAATTAAAAAG
1 TATATTTAATTAAAAAG
*
30446632 TATATTTGATTAAAAA
1 TATATTTAATTAAAAA
30446648 TAAAAAATAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.52, C:0.00, G:0.06, T:0.42
Consensus pattern (17 bp):
TATATTTAATTAAAAAG
Found at i:30457411 original size:23 final size:22
Alignment explanation
Indices: 30457368--30457411 Score: 54
Period size: 23 Copynumber: 1.9 Consensus size: 22
30457358 TTCTAAGTCG
30457368 ATATTCAATTCAATTCCACACCT
1 ATATTCAATTCAATT-CACACCT
30457391 ATATTCATTATTCAATT-ACAC
1 ATATTCA--ATTCAATTCACAC
30457412 TTAGTCAATT
Statistics
Matches: 19, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
23 11 0.58
25 8 0.42
ACGTcount: A:0.36, C:0.25, G:0.00, T:0.39
Consensus pattern (22 bp):
ATATTCAATTCAATTCACACCT
Found at i:30457520 original size:45 final size:45
Alignment explanation
Indices: 30457456--30457544 Score: 151
Period size: 45 Copynumber: 2.0 Consensus size: 45
30457446 AATAGATACT
* *
30457456 CGGTGGATTCAGCACATAGCAACCACCTTATTAATCAATGATGTG
1 CGGTGGAATCAGCACATAGCAACCACCTTACTAATCAATGATGTG
*
30457501 CGGTGGAATCAGCACATAGCAACCACTTTACTAATCAATGATGT
1 CGGTGGAATCAGCACATAGCAACCACCTTACTAATCAATGATGT
30457545 TCAGTTCACA
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
45 41 1.00
ACGTcount: A:0.33, C:0.22, G:0.19, T:0.26
Consensus pattern (45 bp):
CGGTGGAATCAGCACATAGCAACCACCTTACTAATCAATGATGTG
Found at i:30457613 original size:51 final size:50
Alignment explanation
Indices: 30457555--30457741 Score: 178
Period size: 51 Copynumber: 3.7 Consensus size: 50
30457545 TCAGTTCACA
* *
30457555 TAGTAGCCTCCACATAGTACTACACATGTGACCATTACCATTCGATACACG
1 TAGTAGCCTGCACATAGTACTACACACGTGACCA-TACCATTCGATACACG
* * * * * * * *
30457606 TAGTAGCCTGCACATTGTACTACACACGTGATCGAAACTATCCGGTACGCA
1 TAGTAGCCTGCACATAGTACTACACACGTGA-CCATACCATTCGATACACG
* * * * * * *
30457657 TAGTAGCCTGCATATAGTACTTCACATGCGACC-TATCATTCCGACACATG
1 TAGTAGCCTGCACATAGTACTACACACGTGACCATACCATT-CGATACACG
*
30457707 TAGTAGCCTGCACATAGTACTACACACGAGACCAT
1 TAGTAGCCTGCACATAGTACTACACACGTGACCAT
30457742 CGCTTTCACT
Statistics
Matches: 104, Mismatches: 29, Indels: 6
0.75 0.21 0.04
Matches are distributed among these distances:
49 3 0.03
50 34 0.33
51 65 0.62
52 2 0.02
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (50 bp):
TAGTAGCCTGCACATAGTACTACACACGTGACCATACCATTCGATACACG
Found at i:30464591 original size:29 final size:25
Alignment explanation
Indices: 30464534--30464604 Score: 70
Period size: 29 Copynumber: 2.6 Consensus size: 25
30464524 ATGTACATAT
30464534 ATTATAATTAATTTTAAAATTTTAAA
1 ATTA-AATTAATTTTAAAATTTTAAA
*
30464560 ATTAAATTAATTATTAGAACATTTCTATA
1 ATTAAATTAATT-TTA-AA-ATTT-TAAA
*
30464589 ATTAATTTAACTTTTA
1 ATTAAATTAA-TTTTA
30464605 TGATATGTTA
Statistics
Matches: 38, Mismatches: 2, Indels: 7
0.81 0.04 0.15
Matches are distributed among these distances:
25 8 0.21
26 7 0.18
27 2 0.05
28 4 0.11
29 15 0.39
30 2 0.05
ACGTcount: A:0.45, C:0.04, G:0.01, T:0.49
Consensus pattern (25 bp):
ATTAAATTAATTTTAAAATTTTAAA
Found at i:30470199 original size:16 final size:16
Alignment explanation
Indices: 30470178--30470211 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
30470168 TATTAATCAA
30470178 GACTTAGTTTTATTTT
1 GACTTAGTTTTATTTT
30470194 GACTTAGTTTTATTTT
1 GACTTAGTTTTATTTT
30470210 GA
1 GA
30470212 TCCAGATGGT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.21, C:0.06, G:0.15, T:0.59
Consensus pattern (16 bp):
GACTTAGTTTTATTTT
Found at i:30471908 original size:7 final size:7
Alignment explanation
Indices: 30471877--30471969 Score: 55
Period size: 7 Copynumber: 13.3 Consensus size: 7
30471867 TCGAGATTCT
30471877 GGGTTT-
1 GGGTTTA
*
30471883 GGGTTCA
1 GGGTTTA
*
30471890 GGATTTA
1 GGGTTTA
*
30471897 AGGTTTA
1 GGGTTTA
*
30471904 GGGTTCA
1 GGGTTTA
*
30471911 AGGTTTA
1 GGGTTTA
*
30471918 AGGTTTAA
1 GGGTTT-A
* *
30471926 AGGTTAA
1 GGGTTTA
*
30471933 GGATTTA
1 GGGTTTA
30471940 GGGTTT-
1 GGGTTTA
30471946 GGGTTTA
1 GGGTTTA
* *
30471953 AGATTTAA
1 GGGTTT-A
30471961 GGGTTTA
1 GGGTTTA
30471968 GG
1 GG
30471970 ATTCATGATT
Statistics
Matches: 65, Mismatches: 18, Indels: 7
0.72 0.20 0.08
Matches are distributed among these distances:
6 11 0.17
7 43 0.66
8 11 0.17
ACGTcount: A:0.24, C:0.02, G:0.35, T:0.39
Consensus pattern (7 bp):
GGGTTTA
Found at i:30471909 original size:21 final size:21
Alignment explanation
Indices: 30471878--30471979 Score: 93
Period size: 22 Copynumber: 4.9 Consensus size: 21
30471868 CGAGATTCTG
30471878 GGTTT-GGGTTCAGGATTTAA
1 GGTTTAGGGTTCAGGATTTAA
30471898 GGTTTAGGGTTCAAGG-TTTAA
1 GGTTTAGGGTTC-AGGATTTAA
* * *
30471919 GGTTTAAAGGTTAAGGATTTAG
1 GGTTT-AGGGTTCAGGATTTAA
* *
30471941 GGTTT-GGGTTTAAGATTTAA
1 GGTTTAGGGTTCAGGATTTAA
* *
30471961 GGGTTTAGGATTCATGATT
1 -GGTTTAGGGTTCAGGATT
30471980 ACCAAATCAA
Statistics
Matches: 66, Mismatches: 10, Indels: 10
0.77 0.12 0.12
Matches are distributed among these distances:
20 16 0.24
21 24 0.36
22 26 0.39
ACGTcount: A:0.25, C:0.03, G:0.32, T:0.40
Consensus pattern (21 bp):
GGTTTAGGGTTCAGGATTTAA
Found at i:30471930 original size:8 final size:7
Alignment explanation
Indices: 30471893--30471967 Score: 64
Period size: 7 Copynumber: 10.6 Consensus size: 7
30471883 GGGTTCAGGA
30471893 TTTAAGG
1 TTTAAGG
*
30471900 TTTAGGG
1 TTTAAGG
*
30471907 TTCAAGG
1 TTTAAGG
30471914 TTTAAGG
1 TTTAAGG
30471921 TTTAAAGG
1 TTT-AAGG
30471929 -TTAAGG
1 TTTAAGG
*
30471935 ATTTAGGG
1 -TTTAAGG
*
30471943 TTT-GGG
1 TTTAAGG
*
30471949 TTTAAGA
1 TTTAAGG
30471956 TTTAAGGG
1 TTTAA-GG
30471964 TTTA
1 TTTA
30471968 GGATTCATGA
Statistics
Matches: 55, Mismatches: 8, Indels: 9
0.76 0.11 0.12
Matches are distributed among these distances:
6 10 0.18
7 31 0.56
8 14 0.25
ACGTcount: A:0.27, C:0.01, G:0.31, T:0.41
Consensus pattern (7 bp):
TTTAAGG
Found at i:30477567 original size:22 final size:22
Alignment explanation
Indices: 30477542--30477598 Score: 53
Period size: 21 Copynumber: 2.6 Consensus size: 22
30477532 AGGGTTTGGG
*
30477542 TTTTGGGGTTTAAGGTTTAAGA
1 TTTTGGGGTTTAAGGGTTAAGA
* * *
30477564 TTTTTGGATTT-AGGGTTATGA
1 TTTTGGGGTTTAAGGGTTAAGA
* *
30477585 GTTTGAGGTTTAAG
1 TTTTGGGGTTTAAG
30477599 ATTCGAGTTC
Statistics
Matches: 26, Mismatches: 8, Indels: 2
0.72 0.22 0.06
Matches are distributed among these distances:
21 15 0.58
22 11 0.42
ACGTcount: A:0.21, C:0.00, G:0.32, T:0.47
Consensus pattern (22 bp):
TTTTGGGGTTTAAGGGTTAAGA
Found at i:30478708 original size:21 final size:21
Alignment explanation
Indices: 30478682--30478723 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
30478672 GTGTAATTCT
30478682 GGGTTT-ATGATTTAAGGTTTA
1 GGGTTTGA-GATTTAAGGTTTA
*
30478703 GGGTTTGAGGTTTAAGGTTTA
1 GGGTTTGAGATTTAAGGTTTA
30478724 AATGTCAAGG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 18 0.95
22 1 0.05
ACGTcount: A:0.21, C:0.00, G:0.33, T:0.45
Consensus pattern (21 bp):
GGGTTTGAGATTTAAGGTTTA
Found at i:30485807 original size:31 final size:31
Alignment explanation
Indices: 30485769--30485830 Score: 115
Period size: 31 Copynumber: 2.0 Consensus size: 31
30485759 TAACTTATTT
*
30485769 CCATCTCAAAACATGTCATTCTTGACCTATA
1 CCATCTCAAAACATGTCATTCTTAACCTATA
30485800 CCATCTCAAAACATGTCATTCTTAACCTATA
1 CCATCTCAAAACATGTCATTCTTAACCTATA
30485831 GCATGCATCA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.34, C:0.29, G:0.05, T:0.32
Consensus pattern (31 bp):
CCATCTCAAAACATGTCATTCTTAACCTATA
Found at i:30493292 original size:33 final size:33
Alignment explanation
Indices: 30493250--30493369 Score: 105
Period size: 33 Copynumber: 3.4 Consensus size: 33
30493240 GTGGATTCAT
*
30493250 CACTTAGCAACCACCAGTGATTCAAGGAATCAG
1 CACTTAGCAACCACCAATGATTCAAGGAATCAG
* * *
30493283 CACTTAGCAACCCCTTTCACATTTAAGATACGATGGAATCAG
1 CACTTAGCAACCAC---CA-A--T--GATTC-AAGGAATCAG
* *
30493325 CACTTAGCAACCACCAATGAGTCAGGGAATCAG
1 CACTTAGCAACCACCAATGATTCAAGGAATCAG
30493358 CACTTAGCAACC
1 CACTTAGCAACC
30493370 CCTTGGGGGA
Statistics
Matches: 70, Mismatches: 8, Indels: 18
0.73 0.08 0.19
Matches are distributed among these distances:
33 34 0.49
34 3 0.04
36 3 0.04
38 1 0.01
39 3 0.04
41 4 0.06
42 22 0.31
ACGTcount: A:0.35, C:0.28, G:0.17, T:0.20
Consensus pattern (33 bp):
CACTTAGCAACCACCAATGATTCAAGGAATCAG
Found at i:30493379 original size:27 final size:29
Alignment explanation
Indices: 30493317--30493400 Score: 100
Period size: 27 Copynumber: 2.8 Consensus size: 29
30493307 AAGATACGAT
*
30493317 GGAATCAGCACTTAGCAACCACCAATGAGTCAG
1 GGAATCAGCACTTAGCAACC-CC-TTGAG--AG
30493350 GGAATCAGCACTTAGCAACCCCTTG-G-G
1 GGAATCAGCACTTAGCAACCCCTTGAGAG
*
30493377 GGAATCAGCACATAGCAACCCCTT
1 GGAATCAGCACTTAGCAACCCCTT
30493401 TCACATTTAA
Statistics
Matches: 49, Mismatches: 2, Indels: 6
0.86 0.04 0.11
Matches are distributed among these distances:
27 24 0.49
30 1 0.02
31 2 0.04
32 2 0.04
33 20 0.41
ACGTcount: A:0.32, C:0.30, G:0.21, T:0.17
Consensus pattern (29 bp):
GGAATCAGCACTTAGCAACCCCTTGAGAG
Found at i:30493395 original size:102 final size:102
Alignment explanation
Indices: 30493275--30493473 Score: 317
Period size: 102 Copynumber: 2.0 Consensus size: 102
30493265 AGTGATTCAA
* *
30493275 GGAATCAGCACTTAGCAACCCCTTTCACATTTAAGATACGATGGAATCAGCACTTAGCAACCACC
1 GGAATCAGCACATAGCAACCCCTTTCACATTTAAAATACGATGGAATCAGCACTTAGCAACCACC
30493340 AATGAGTCAGGGAATCAGCACTTAGCAACCCCTTGGG
66 AATGAGTCAGGGAATCAGCACTTAGCAACCCCTTGGG
* *
30493377 GGAATCAGCACATAGCAACCCCTTTCACATTTAAAATACGGTGTAATCAGCACTTAGCAACCACC
1 GGAATCAGCACATAGCAACCCCTTTCACATTTAAAATACGATGGAATCAGCACTTAGCAACCACC
* * * * *
30493442 AATGATTCGGGGAATTAGCGCTTAGCATCCCC
66 AATGAGTCAGGGAATCAGCACTTAGCAACCCC
30493474 CTTTATATTC
Statistics
Matches: 88, Mismatches: 9, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
102 88 1.00
ACGTcount: A:0.32, C:0.28, G:0.19, T:0.22
Consensus pattern (102 bp):
GGAATCAGCACATAGCAACCCCTTTCACATTTAAAATACGATGGAATCAGCACTTAGCAACCACC
AATGAGTCAGGGAATCAGCACTTAGCAACCCCTTGGG
Found at i:30501028 original size:3 final size:3
Alignment explanation
Indices: 30501020--30501047 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
30501010 AGGCAATAAT
30501020 TTA TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA T
30501048 ACATACTAAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:30522024 original size:29 final size:29
Alignment explanation
Indices: 30521990--30522046 Score: 87
Period size: 29 Copynumber: 2.0 Consensus size: 29
30521980 TAATCTAATG
*
30521990 TGTAATGTTATATATAAAATTTAATTTTA
1 TGTAATGTTATAAATAAAATTTAATTTTA
* *
30522019 TGTAATTTTATAAATAAAATTTTATTTT
1 TGTAATGTTATAAATAAAATTTAATTTT
30522047 GATTCGATTT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
29 25 1.00
ACGTcount: A:0.40, C:0.00, G:0.05, T:0.54
Consensus pattern (29 bp):
TGTAATGTTATAAATAAAATTTAATTTTA
Found at i:30525314 original size:21 final size:21
Alignment explanation
Indices: 30525290--30525329 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
30525280 ATATTTTATA
*
30525290 TTAATAAAATATTTTTAATTT
1 TTAATAAAATAATTTTAATTT
* *
30525311 TTAATTATATAATTTTAAT
1 TTAATAAAATAATTTTAAT
30525330 AATAATAATC
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.57
Consensus pattern (21 bp):
TTAATAAAATAATTTTAATTT
Found at i:30531662 original size:31 final size:29
Alignment explanation
Indices: 30531592--30531663 Score: 81
Period size: 29 Copynumber: 2.4 Consensus size: 29
30531582 ACCTTAGGTT
*
30531592 ACATTTTAGTCACTTATGTTTGAAATGTT
1 ACATTTTAGTCACTTATGTTTGAAATGTA
* ***
30531621 ACGTTTTAGTCACTTATGTTATCGTGTTGTA
1 ACATTTTAGTCACTTATGTT-T-GAAATGTA
30531652 ACATTTTAGTCA
1 ACATTTTAGTCA
30531664 TTGAGCCGTT
Statistics
Matches: 35, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
29 19 0.54
30 1 0.03
31 15 0.43
ACGTcount: A:0.25, C:0.12, G:0.15, T:0.47
Consensus pattern (29 bp):
ACATTTTAGTCACTTATGTTTGAAATGTA
Found at i:30532860 original size:7 final size:7
Alignment explanation
Indices: 30532861--30532888 Score: 56
Period size: 7 Copynumber: 4.0 Consensus size: 7
30532851 TAAATTTTAA
30532861 AAATATT
1 AAATATT
30532868 AAATATT
1 AAATATT
30532875 AAATATT
1 AAATATT
30532882 AAATATT
1 AAATATT
30532889 TTATAATTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 21 1.00
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (7 bp):
AAATATT
Found at i:30532941 original size:28 final size:28
Alignment explanation
Indices: 30532908--30532973 Score: 98
Period size: 27 Copynumber: 2.4 Consensus size: 28
30532898 TTATGCTTTC
30532908 TTAAAAATTTTAAATAATTTTT-AATTT
1 TTAAAAATTTTAAATAATTTTTGAATTT
* *
30532935 TTAAAAATATTAAATATTTTTTGAATTT
1 TTAAAAATTTTAAATAATTTTTGAATTT
*
30532963 TTAAAAGTTTT
1 TTAAAAATTTT
30532974 TAAAAAATAA
Statistics
Matches: 34, Mismatches: 4, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
27 20 0.59
28 14 0.41
ACGTcount: A:0.42, C:0.00, G:0.03, T:0.55
Consensus pattern (28 bp):
TTAAAAATTTTAAATAATTTTTGAATTT
Found at i:30534732 original size:22 final size:22
Alignment explanation
Indices: 30534706--30534753 Score: 78
Period size: 22 Copynumber: 2.2 Consensus size: 22
30534696 ATTCATAAAA
*
30534706 TATCGATACTGGGTTAAAAAGG
1 TATCGATACTGGGCTAAAAAGG
*
30534728 TATCGATACTTGGCTAAAAAGG
1 TATCGATACTGGGCTAAAAAGG
30534750 TATC
1 TATC
30534754 TGTACTTTTT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.35, C:0.12, G:0.23, T:0.29
Consensus pattern (22 bp):
TATCGATACTGGGCTAAAAAGG
Found at i:30534974 original size:17 final size:16
Alignment explanation
Indices: 30534948--30534979 Score: 55
Period size: 17 Copynumber: 1.9 Consensus size: 16
30534938 CATCATTTTG
30534948 TTAATTTTATTCAAAT
1 TTAATTTTATTCAAAT
30534964 TTAACTTTTATTCAAA
1 TTAA-TTTTATTCAAA
30534980 AACACTTCAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 4 0.27
17 11 0.73
ACGTcount: A:0.38, C:0.09, G:0.00, T:0.53
Consensus pattern (16 bp):
TTAATTTTATTCAAAT
Found at i:30537462 original size:20 final size:20
Alignment explanation
Indices: 30537439--30537516 Score: 79
Period size: 20 Copynumber: 4.0 Consensus size: 20
30537429 TAAAGCTATC
*
30537439 AGGGGCACCGAAGTGCAAAT
1 AGGGGCACCAAAGTGCAAAT
* *
30537459 AGGGGCACCGCAA-TGCAAAC
1 AGGGGCACC-AAAGTGCAAAT
* **
30537479 AAGGGCACCAAAGTGTGAAT
1 AGGGGCACCAAAGTGCAAAT
30537499 AGGGG-ACCAAAGTGCAAA
1 AGGGGCACCAAAGTGCAAA
30537517 CTCATACAAG
Statistics
Matches: 46, Mismatches: 10, Indels: 5
0.75 0.16 0.08
Matches are distributed among these distances:
19 13 0.28
20 31 0.67
21 2 0.04
ACGTcount: A:0.38, C:0.21, G:0.32, T:0.09
Consensus pattern (20 bp):
AGGGGCACCAAAGTGCAAAT
Found at i:30537937 original size:25 final size:25
Alignment explanation
Indices: 30537893--30537965 Score: 103
Period size: 25 Copynumber: 2.9 Consensus size: 25
30537883 CCCGGCCCAT
*
30537893 ATTAAATATATATAAAATATATATTTG
1 ATTAAATATA-A-AATATATATATTTG
30537920 ATTAAATATAAAATATATATATTTG
1 ATTAAATATAAAATATATATATTTG
*
30537945 ATTAAAAAT-AAATATATATAT
1 ATTAAATATAAAATATATATAT
30537966 GTAATATATA
Statistics
Matches: 44, Mismatches: 2, Indels: 3
0.90 0.04 0.06
Matches are distributed among these distances:
24 12 0.27
25 21 0.48
26 1 0.02
27 10 0.23
ACGTcount: A:0.55, C:0.00, G:0.03, T:0.42
Consensus pattern (25 bp):
ATTAAATATAAAATATATATATTTG
Found at i:30542999 original size:27 final size:27
Alignment explanation
Indices: 30542960--30543032 Score: 71
Period size: 25 Copynumber: 2.7 Consensus size: 27
30542950 AATATTTATC
* *
30542960 AATTTGATCATTATTCAAAATATTCAA-A
1 AATTT-ATAATTATT-AAAATATTAAATA
*
30542988 AATTTATAATTA-TAGAATATTAAATA
1 AATTTATAATTATTAAAATATTAAATA
*
30543014 AATTTA-AATTATAAAAATA
1 AATTTATAATTATTAAAATA
30543033 AAACAACTCA
Statistics
Matches: 38, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
25 14 0.37
26 13 0.34
27 6 0.16
28 5 0.13
ACGTcount: A:0.53, C:0.04, G:0.03, T:0.40
Consensus pattern (27 bp):
AATTTATAATTATTAAAATATTAAATA
Found at i:30543006 original size:25 final size:25
Alignment explanation
Indices: 30542978--30543026 Score: 73
Period size: 25 Copynumber: 2.0 Consensus size: 25
30542968 CATTATTCAA
*
30542978 AATATTCAA-AAATTTATAATTATAG
1 AATATTAAATAAATTTA-AATTATAG
30543003 AATATTAAATAAATTTAAATTATA
1 AATATTAAATAAATTTAAATTATA
30543027 AAAATAAAAC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 15 0.68
26 7 0.32
ACGTcount: A:0.55, C:0.02, G:0.02, T:0.41
Consensus pattern (25 bp):
AATATTAAATAAATTTAAATTATAG
Found at i:30543116 original size:8 final size:8
Alignment explanation
Indices: 30543090--30543147 Score: 50
Period size: 8 Copynumber: 7.1 Consensus size: 8
30543080 AACTCAACCA
30543090 TTAATAATT
1 TTAAT-ATT
30543099 TT-ATATTT
1 TTAATA-TT
30543107 TTAATATT
1 TTAATATT
30543115 TTAATATT
1 TTAATATT
30543123 TT-ATAATT
1 TTAAT-ATT
*
30543131 ATAAT-TT
1 TTAATATT
30543138 TTAAATATT
1 TT-AATATT
30543147 T
1 T
30543148 AGAATAATGA
Statistics
Matches: 41, Mismatches: 2, Indels: 12
0.75 0.04 0.22
Matches are distributed among these distances:
7 6 0.15
8 25 0.61
9 10 0.24
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (8 bp):
TTAATATT
Found at i:30543117 original size:16 final size:18
Alignment explanation
Indices: 30543090--30543129 Score: 57
Period size: 17 Copynumber: 2.3 Consensus size: 18
30543080 AACTCAACCA
30543090 TTAATAATTTT-ATATTT
1 TTAATAATTTTAATATTT
30543107 TTAAT-ATTTTAATATTT
1 TTAATAATTTTAATATTT
30543124 TATAAT
1 T-TAAT
30543130 TATAATTTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
16 5 0.24
17 12 0.57
18 4 0.19
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (18 bp):
TTAATAATTTTAATATTT
Found at i:30543144 original size:24 final size:24
Alignment explanation
Indices: 30543096--30543147 Score: 68
Period size: 24 Copynumber: 2.2 Consensus size: 24
30543086 ACCATTAATA
* * *
30543096 ATTTTATATTTTTAATATTTTAAT
1 ATTTTATAATTATAATATTTAAAT
*
30543120 ATTTTATAATTATAATTTTTAAAT
1 ATTTTATAATTATAATATTTAAAT
30543144 ATTT
1 ATTT
30543148 AGAATAATGA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (24 bp):
ATTTTATAATTATAATATTTAAAT
Found at i:30543524 original size:13 final size:14
Alignment explanation
Indices: 30543506--30543536 Score: 55
Period size: 14 Copynumber: 2.3 Consensus size: 14
30543496 AAATTTTCAA
30543506 AAAATTA-TAAAAT
1 AAAATTATTAAAAT
30543519 AAAATTATTAAAAT
1 AAAATTATTAAAAT
30543533 AAAA
1 AAAA
30543537 CAACTCAACA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 7 0.41
14 10 0.59
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (14 bp):
AAAATTATTAAAAT
Found at i:30543592 original size:23 final size:20
Alignment explanation
Indices: 30543560--30543611 Score: 61
Period size: 21 Copynumber: 2.5 Consensus size: 20
30543550 TTTATGAATT
30543560 AAAAAT-TAAATTATGAAAAC
1 AAAAATATAAATTAT-AAAAC
30543580 TATAAAATATAAAATTATAAAAC
1 -A-AAAATAT-AAATTATAAAAC
30543603 AAAAATATA
1 AAAAATATA
30543612 TAAAATTAAA
Statistics
Matches: 28, Mismatches: 0, Indels: 7
0.80 0.00 0.20
Matches are distributed among these distances:
20 1 0.04
21 8 0.29
22 6 0.21
23 6 0.21
24 7 0.25
ACGTcount: A:0.67, C:0.04, G:0.02, T:0.27
Consensus pattern (20 bp):
AAAAATATAAATTATAAAAC
Found at i:30543593 original size:15 final size:15
Alignment explanation
Indices: 30543559--30543622 Score: 53
Period size: 15 Copynumber: 4.3 Consensus size: 15
30543549 TTTTATGAAT
*
30543559 TAAAAAT-TAAATTA
1 TAAAAATATAAAATA
*
30543573 TGAAAACTATAAAATA
1 T-AAAAATATAAAATA
* *
30543589 TAAAATTATAAAACA
1 TAAAAATATAAAATA
30543604 -AAAATATATAAAAT-
1 TAAAA-ATATAAAATA
30543618 TAAAA
1 TAAAA
30543623 TAAATAAATA
Statistics
Matches: 40, Mismatches: 6, Indels: 7
0.75 0.11 0.13
Matches are distributed among these distances:
14 5 0.12
15 28 0.70
16 7 0.17
ACGTcount: A:0.67, C:0.03, G:0.02, T:0.28
Consensus pattern (15 bp):
TAAAAATATAAAATA
Found at i:30543612 original size:23 final size:24
Alignment explanation
Indices: 30543560--30543619 Score: 74
Period size: 23 Copynumber: 2.6 Consensus size: 24
30543550 TTTATGAATT
30543560 AAAAAT-T-AAATTATGAAAACTA
1 AAAAATATAAAATTATGAAAACTA
*
30543582 TAAAATATAAAATTAT-AAAAC-A
1 AAAAATATAAAATTATGAAAACTA
30543604 AAAATATATAAAATTA
1 AAAA-ATATAAAATTA
30543620 AAATAAATAA
Statistics
Matches: 33, Mismatches: 2, Indels: 5
0.82 0.05 0.12
Matches are distributed among these distances:
22 9 0.27
23 17 0.52
24 7 0.21
ACGTcount: A:0.67, C:0.03, G:0.02, T:0.28
Consensus pattern (24 bp):
AAAAATATAAAATTATGAAAACTA
Found at i:30543623 original size:15 final size:15
Alignment explanation
Indices: 30543580--30543630 Score: 59
Period size: 15 Copynumber: 3.4 Consensus size: 15
30543570 TTATGAAAAC
30543580 TATAAAATATAAAAT-
1 TATAAAAT-TAAAATA
**
30543595 TATAAAACAAAAATA
1 TATAAAATTAAAATA
30543610 TATAAAATTAAAATA
1 TATAAAATTAAAATA
*
30543625 AATAAA
1 TATAAA
30543631 TAAGAAGTAA
Statistics
Matches: 30, Mismatches: 5, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
14 5 0.17
15 25 0.83
ACGTcount: A:0.71, C:0.02, G:0.00, T:0.27
Consensus pattern (15 bp):
TATAAAATTAAAATA
Found at i:30543631 original size:23 final size:24
Alignment explanation
Indices: 30543567--30543632 Score: 77
Period size: 23 Copynumber: 2.8 Consensus size: 24
30543557 ATTAAAAATT
*
30543567 AAATTATGAAAACTATAAA-ATATA
1 AAATTAT-AAAACAATAAATATATA
30543591 AAATTATAAAACAA-AAATATATA
1 AAATTATAAAACAATAAATATATA
30543614 AAATTA-AAATA-AATAAATA
1 AAATTATAAA-ACAATAAATA
30543633 AGAAGTAAAT
Statistics
Matches: 38, Mismatches: 1, Indels: 7
0.83 0.02 0.15
Matches are distributed among these distances:
22 8 0.21
23 23 0.61
24 7 0.18
ACGTcount: A:0.68, C:0.03, G:0.02, T:0.27
Consensus pattern (24 bp):
AAATTATAAAACAATAAATATATA
Found at i:30545813 original size:27 final size:27
Alignment explanation
Indices: 30545775--30545829 Score: 110
Period size: 27 Copynumber: 2.0 Consensus size: 27
30545765 TTACGTGGAG
30545775 AACAAAAAATTACGAAATAGTCCCTGA
1 AACAAAAAATTACGAAATAGTCCCTGA
30545802 AACAAAAAATTACGAAATAGTCCCTGA
1 AACAAAAAATTACGAAATAGTCCCTGA
30545829 A
1 A
30545830 CTTCTACAAC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.53, C:0.18, G:0.11, T:0.18
Consensus pattern (27 bp):
AACAAAAAATTACGAAATAGTCCCTGA
Found at i:30548006 original size:16 final size:16
Alignment explanation
Indices: 30547950--30548007 Score: 55
Period size: 16 Copynumber: 3.3 Consensus size: 16
30547940 ACAACGAACA
30547950 TATAACATATATGCAG
1 TATAACATATATGCAG
30547966 TATAAACTATCATATTGATCA-
1 TAT-AAC-AT-ATA-TG--CAG
30547987 TATAACATATATGCAG
1 TATAACATATATGCAG
30548003 TATAA
1 TATAA
30548008 AATGCCATTT
Statistics
Matches: 35, Mismatches: 0, Indels: 14
0.71 0.00 0.29
Matches are distributed among these distances:
15 2 0.06
16 8 0.23
17 5 0.14
18 5 0.14
19 5 0.14
20 5 0.14
21 3 0.09
22 2 0.06
ACGTcount: A:0.45, C:0.12, G:0.09, T:0.34
Consensus pattern (16 bp):
TATAACATATATGCAG
Found at i:30551136 original size:22 final size:22
Alignment explanation
Indices: 30551106--30551148 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
30551096 ATTTTACATA
*
30551106 ATTTGTGTAATATATTAAAATC
1 ATTTATGTAATATATTAAAATC
30551128 ATTTATGTAATATATTAAAAT
1 ATTTATGTAATATATTAAAAT
30551149 ATAAAAAATT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.44, C:0.02, G:0.07, T:0.47
Consensus pattern (22 bp):
ATTTATGTAATATATTAAAATC
Found at i:30551501 original size:21 final size:22
Alignment explanation
Indices: 30551471--30551511 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
30551461 ATAAAAAAAT
*
30551471 TCTCATATTTA-GAGTTTAGGG
1 TCTCAAATTTACGAGTTTAGGG
*
30551492 TCTCAAATTTACGATTTTAG
1 TCTCAAATTTACGAGTTTAG
30551512 TATTTATTTA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 10 0.59
22 7 0.41
ACGTcount: A:0.27, C:0.12, G:0.17, T:0.44
Consensus pattern (22 bp):
TCTCAAATTTACGAGTTTAGGG
Found at i:30557287 original size:22 final size:23
Alignment explanation
Indices: 30557227--30557297 Score: 73
Period size: 22 Copynumber: 3.3 Consensus size: 23
30557217 AGGATCATTA
30557227 TTAA-AAATAATTT-AATA-AA-
1 TTAATAAATAATTTAAATATAAT
* *
30557246 -TAATAAATAATTTAATTATATT
1 TTAATAAATAATTTAAATATAAT
*
30557268 TTAATAAATTA-TTAAATATAAT
1 TTAATAAATAATTTAAATATAAT
30557290 TTAATAAA
1 TTAATAAA
30557298 AATAATCAAA
Statistics
Matches: 42, Mismatches: 5, Indels: 7
0.78 0.09 0.13
Matches are distributed among these distances:
18 3 0.07
19 9 0.21
20 3 0.07
21 1 0.02
22 17 0.40
23 9 0.21
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (23 bp):
TTAATAAATAATTTAAATATAAT
Found at i:30557297 original size:14 final size:14
Alignment explanation
Indices: 30557270--30557322 Score: 56
Period size: 14 Copynumber: 3.9 Consensus size: 14
30557260 ATTATATTTT
* *
30557270 AATAAATTATTAAA
1 AATAATTTAATAAA
*
30557284 TATAATTTAATAAA
1 AATAATTTAATAAA
*
30557298 AATAA-TCAA-AAA
1 AATAATTTAATAAA
30557310 AATAATTTAATAA
1 AATAATTTAATAA
30557323 TATTTTTATT
Statistics
Matches: 31, Mismatches: 6, Indels: 4
0.76 0.15 0.10
Matches are distributed among these distances:
12 8 0.26
13 6 0.19
14 17 0.55
ACGTcount: A:0.64, C:0.02, G:0.00, T:0.34
Consensus pattern (14 bp):
AATAATTTAATAAA
Found at i:30557424 original size:12 final size:12
Alignment explanation
Indices: 30557407--30557432 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
30557397 ATTTTATATT
30557407 AAATTATATTAA
1 AAATTATATTAA
30557419 AAATTATATTAA
1 AAATTATATTAA
30557431 AA
1 AA
30557433 TATTTCAAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (12 bp):
AAATTATATTAA
Found at i:30557450 original size:22 final size:22
Alignment explanation
Indices: 30557390--30557450 Score: 61
Period size: 22 Copynumber: 2.7 Consensus size: 22
30557380 ATATTTTGAA
*
30557390 ATTAAATATTTTATATTAAATTAT
1 ATTAAATA-TTT-TATTAAAATAT
* *
30557414 ATTAAAAATTATATTAAAATAT
1 ATTAAATATTTTATTAAAATAT
30557436 -TTCAAATATTTTATT
1 ATT-AAATATTTTATT
30557451 TTTATATTTT
Statistics
Matches: 31, Mismatches: 5, Indels: 4
0.77 0.12 0.10
Matches are distributed among these distances:
21 2 0.06
22 20 0.65
23 2 0.06
24 7 0.23
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.51
Consensus pattern (22 bp):
ATTAAATATTTTATTAAAATAT
Found at i:30559332 original size:29 final size:30
Alignment explanation
Indices: 30559289--30559359 Score: 99
Period size: 29 Copynumber: 2.4 Consensus size: 30
30559279 AAATTAAAAC
*
30559289 TTCATGTATAAAATTGTACA-AAATCAAAG
1 TTCATGTATAAAATTGCACATAAATCAAAG
*
30559318 TTCATGTATAGAATTGCACATTAAATCAAAG
1 TTCATGTATAAAATTGCACA-TAAATCAAAG
*
30559349 TTCATGAATAA
1 TTCATGTATAA
30559360 TTTTGAGATT
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
29 18 0.50
31 18 0.50
ACGTcount: A:0.45, C:0.11, G:0.11, T:0.32
Consensus pattern (30 bp):
TTCATGTATAAAATTGCACATAAATCAAAG
Found at i:30563929 original size:88 final size:87
Alignment explanation
Indices: 30563825--30564260 Score: 606
Period size: 87 Copynumber: 5.0 Consensus size: 87
30563815 AAGACTGATG
* * * * * *
30563825 TCTTCGATCTGCTTCGCTGCCAGTACAGAAAGGCAGGATCTGCCATTTTCAACCTACTCCACTAC
1 TCTTCGATCTGCTTCGCTGTCAGTACAGGAAGACAAGATCTGCTATTTTCAACCTACTCCACTAT
* * *
30563890 TGCCCAGGGAGACAATGTTGAG-G
66 TG-CCAGGGAGACAAGGCTG-GTA
* * ** * *
30563913 TCTTCGATCTACTTCGCTGCCAACACAGGAAGATAAGATCTGCTATTTTCAACCTACTCCACTAC
1 TCTTCGATCTGCTTCGCTGTCAGTACAGGAAGACAAGATCTGCTATTTTCAACCTACTCCACTAT
30563978 TGCCCAGGGAGACAAGGCTGGTA
66 TG-CCAGGGAGACAAGGCTGGTA
* * **
30564001 TCTTCGATTTGCTTCTG-TGTCAGCACAGTTAGACAAGATCTGCTATTTTCAACCTACTCCACTA
1 TCTTCGATCTGCTTC-GCTGTCAGTACAGGAAGACAAGATCTGCTATTTTCAACCTACTCCACTA
30564065 TTGCCAGGGAGACAAGGCTGGTA
65 TTGCCAGGGAGACAAGGCTGGTA
*
30564088 TCTTCGATCTGCTTCTCTGTCAGTACAGGAAGACAAGATCTGCTATTTTCAACCTACTCCACTAT
1 TCTTCGATCTGCTTCGCTGTCAGTACAGGAAGACAAGATCTGCTATTTTCAACCTACTCCACTAT
*
30564153 TGCCAGGGAGACAAAGCTGGTA
66 TGCCAGGGAGACAAGGCTGGTA
* * *
30564175 TCTTCGATCTGCTTCTCTGTCAGTACATGAAGGCAAGATCTGCTATTTTCAACCTACTCCACTAT
1 TCTTCGATCTGCTTCGCTGTCAGTACAGGAAGACAAGATCTGCTATTTTCAACCTACTCCACTAT
30564240 TGCCAGGGAGACAAGGCTGGT
66 TGCCAGGGAGACAAGGCTGGT
30564261 TGCGATCTGC
Statistics
Matches: 317, Mismatches: 28, Indels: 7
0.90 0.08 0.02
Matches are distributed among these distances:
87 184 0.58
88 132 0.42
89 1 0.00
ACGTcount: A:0.25, C:0.26, G:0.21, T:0.28
Consensus pattern (87 bp):
TCTTCGATCTGCTTCGCTGTCAGTACAGGAAGACAAGATCTGCTATTTTCAACCTACTCCACTAT
TGCCAGGGAGACAAGGCTGGTA
Found at i:30564080 original size:43 final size:43
Alignment explanation
Indices: 30564031--30564254 Score: 164
Period size: 42 Copynumber: 5.2 Consensus size: 43
30564021 CAGCACAGTT
30564031 AGACAAGATCTGCTATTTTCAACCTACTCCACTATTGCCAGGG
1 AGACAAGATCTGCTATTTTCAACCTACTCCACTATTGCCAGGG
* * * * * * * * * * * *
30564074 AGACAAG-GCTGGTATCTTCGATCTGCTTCTCTGTCAGTACAGGA
1 AGACAAGATCTGCTATTTTCAACCTACTCCACTAT-TG-CCAGGG
30564118 AGACAAGATCTGCTATTTTCAACCTACTCCACTATTGCCAGGG
1 AGACAAGATCTGCTATTTTCAACCTACTCCACTATTGCCAGGG
* * * * * * * * * * * * *
30564161 AGACAA-AGCTGGTATCTTCGATCTGCTTCTCTGTCAGTACATGA
1 AGACAAGATCTGCTATTTTCAACCTACTCCACTAT-TG-CCAGGG
*
30564205 AGGCAAGATCTGCTATTTTCAACCTACTCCACTATTGCCAGGG
1 AGACAAGATCTGCTATTTTCAACCTACTCCACTATTGCCAGGG
30564248 AGACAAG
1 AGACAAG
30564255 GCTGGTTGCG
Statistics
Matches: 123, Mismatches: 52, Indels: 12
0.66 0.28 0.06
Matches are distributed among these distances:
42 37 0.30
43 28 0.23
44 21 0.17
45 37 0.30
ACGTcount: A:0.27, C:0.25, G:0.20, T:0.28
Consensus pattern (43 bp):
AGACAAGATCTGCTATTTTCAACCTACTCCACTATTGCCAGGG
Found at i:30581787 original size:7 final size:8
Alignment explanation
Indices: 30581765--30581796 Score: 57
Period size: 8 Copynumber: 4.1 Consensus size: 8
30581755 CGTTTTGCCC
30581765 GTTTTAGG
1 GTTTTAGG
30581773 GTTTTAGG
1 GTTTTAGG
30581781 G-TTTAGG
1 GTTTTAGG
30581788 GTTTTAGG
1 GTTTTAGG
30581796 G
1 G
30581797 ATTAAGGTTA
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
7 7 0.30
8 16 0.70
ACGTcount: A:0.12, C:0.00, G:0.41, T:0.47
Consensus pattern (8 bp):
GTTTTAGG
Found at i:30581787 original size:15 final size:15
Alignment explanation
Indices: 30581767--30581796 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
30581757 TTTTGCCCGT
30581767 TTTAGGGTTTTAGGG
1 TTTAGGGTTTTAGGG
30581782 TTTAGGGTTTTAGGG
1 TTTAGGGTTTTAGGG
30581797 ATTAAGGTTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.13, C:0.00, G:0.40, T:0.47
Consensus pattern (15 bp):
TTTAGGGTTTTAGGG
Found at i:30581805 original size:15 final size:15
Alignment explanation
Indices: 30581772--30581805 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
30581762 CCCGTTTTAG
* *
30581772 GGTTTTAGGGTTTAG
1 GGTTTTAGGGATTAA
30581787 GGTTTTAGGGATTAA
1 GGTTTTAGGGATTAA
30581802 GGTT
1 GGTT
30581806 AAAAATTAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.18, C:0.00, G:0.38, T:0.44
Consensus pattern (15 bp):
GGTTTTAGGGATTAA
Found at i:30582380 original size:6 final size:6
Alignment explanation
Indices: 30582369--30582395 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
30582359 AAAAATTAAA
30582369 TTAGGG TTAGGG TTAGGG TTAGGG TTA
1 TTAGGG TTAGGG TTAGGG TTAGGG TTA
30582396 AGGTGTTTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.19, C:0.00, G:0.44, T:0.37
Consensus pattern (6 bp):
TTAGGG
Found at i:30582896 original size:21 final size:21
Alignment explanation
Indices: 30582872--30582916 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
30582862 TTGTCTAGCT
* * *
30582872 TCCGGCGGGGGTTGTGGTTGC
1 TCCGGCGGGGATTCTGGTTCC
30582893 TCCGGCGGGGATTCTGGTTCC
1 TCCGGCGGGGATTCTGGTTCC
30582914 TCC
1 TCC
30582917 AATAGGGTAT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.02, C:0.27, G:0.42, T:0.29
Consensus pattern (21 bp):
TCCGGCGGGGATTCTGGTTCC
Found at i:30583200 original size:18 final size:18
Alignment explanation
Indices: 30583174--30583216 Score: 68
Period size: 18 Copynumber: 2.4 Consensus size: 18
30583164 GACTCGAAAA
* *
30583174 AGGAAACATATAAGGGTT
1 AGGATACATAAAAGGGTT
30583192 AGGATACATAAAAGGGTT
1 AGGATACATAAAAGGGTT
30583210 AGGATAC
1 AGGATAC
30583217 GCACCTGGCA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.44, C:0.07, G:0.28, T:0.21
Consensus pattern (18 bp):
AGGATACATAAAAGGGTT
Found at i:30584995 original size:12 final size:11
Alignment explanation
Indices: 30584974--30584998 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
30584964 AATTTTTACG
30584974 ATTTAAAAAAA
1 ATTTAAAAAAA
30584985 ATTTAAAAAAA
1 ATTTAAAAAAA
30584996 ATT
1 ATT
30584999 AGAATTTTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (11 bp):
ATTTAAAAAAA
Found at i:30585764 original size:26 final size:26
Alignment explanation
Indices: 30585735--30585784 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
30585725 TTTGAACCAA
30585735 ACTTTTCAAAAGTATTTCTCAAAAAC
1 ACTTTTCAAAAGTATTTCTCAAAAAC
* * *
30585761 ACTTTTCCACAGTATTTTTCAAAA
1 ACTTTTCAAAAGTATTTCTCAAAA
30585785 GCATTGATAA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.38, C:0.20, G:0.04, T:0.38
Consensus pattern (26 bp):
ACTTTTCAAAAGTATTTCTCAAAAAC
Found at i:30585824 original size:16 final size:16
Alignment explanation
Indices: 30585803--30585867 Score: 50
Period size: 16 Copynumber: 4.3 Consensus size: 16
30585793 AAACTAGACC
*
30585803 TAAATTATTTTAATAT
1 TAAATTAATTTAATAT
*
30585819 TAAATTAATATAATA-
1 TAAATTAATTTAATAT
*
30585834 T---TT-ATTTTATAT
1 TAAATTAATTTAATAT
*
30585846 TAGATTAAATTTAATAT
1 TAAATT-AATTTAATAT
30585863 TAAAT
1 TAAAT
30585868 CTTATTAAAA
Statistics
Matches: 37, Mismatches: 6, Indels: 11
0.69 0.11 0.20
Matches are distributed among these distances:
11 6 0.16
12 3 0.08
15 3 0.08
16 13 0.35
17 12 0.32
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.52
Consensus pattern (16 bp):
TAAATTAATTTAATAT
Found at i:30585839 original size:28 final size:28
Alignment explanation
Indices: 30585807--30585863 Score: 80
Period size: 28 Copynumber: 2.0 Consensus size: 28
30585797 TAGACCTAAA
30585807 TTATTTTAATATTAAATT-AATATAATAT
1 TTATTTT-ATATTAAATTAAATATAATAT
* *
30585835 TTATTTTATATTAGATTAAATTTAATAT
1 TTATTTTATATTAAATTAAATATAATAT
30585863 T
1 T
30585864 AAATCTTATT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
27 9 0.35
28 17 0.65
ACGTcount: A:0.42, C:0.00, G:0.02, T:0.56
Consensus pattern (28 bp):
TTATTTTATATTAAATTAAATATAATAT
Found at i:30585925 original size:17 final size:17
Alignment explanation
Indices: 30585903--30585952 Score: 55
Period size: 20 Copynumber: 2.8 Consensus size: 17
30585893 CTACAAGATA
*
30585903 AATATTAAATTAAGTTT
1 AATATTAAATTAACTTT
*
30585920 AATATTAAGATAATCACTTT
1 AATATTAA-AT--TAACTTT
30585940 AATATTAAATTAA
1 AATATTAAATTAA
30585953 TAAAATACTA
Statistics
Matches: 27, Mismatches: 3, Indels: 6
0.75 0.08 0.17
Matches are distributed among these distances:
17 10 0.37
18 2 0.07
19 2 0.07
20 13 0.48
ACGTcount: A:0.50, C:0.04, G:0.04, T:0.42
Consensus pattern (17 bp):
AATATTAAATTAACTTT
Found at i:30587567 original size:16 final size:16
Alignment explanation
Indices: 30587546--30587576 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
30587536 CTATGCATGC
*
30587546 AAAATATAAAAGACAG
1 AAAATACAAAAGACAG
30587562 AAAATACAAAAGACA
1 AAAATACAAAAGACA
30587577 TAATAGTGAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.71, C:0.10, G:0.10, T:0.10
Consensus pattern (16 bp):
AAAATACAAAAGACAG
Found at i:30595202 original size:6 final size:6
Alignment explanation
Indices: 30595193--30595219 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
30595183 GAGGGAAGGG
30595193 GGGGGA GGGGGA GGGGGA GGGGGA GGG
1 GGGGGA GGGGGA GGGGGA GGGGGA GGG
30595220 CACGGTAGGG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.15, C:0.00, G:0.85, T:0.00
Consensus pattern (6 bp):
GGGGGA
Found at i:30596525 original size:41 final size:43
Alignment explanation
Indices: 30596480--30596560 Score: 121
Period size: 41 Copynumber: 1.9 Consensus size: 43
30596470 TGTGCTGGCC
**
30596480 TGTCAATGGCCGGCACCAGTAGTAC-AAAAAA-AAATTTTGTA
1 TGTCAATGGCCGGCACCACCAGTACGAAAAAATAAATTTTGTA
*
30596521 TGTCAATGGCCGGCATCACCAGTACGAAAAAATAAATTTT
1 TGTCAATGGCCGGCACCACCAGTACGAAAAAATAAATTTT
30596561 TTTTGGTGCT
Statistics
Matches: 35, Mismatches: 3, Indels: 2
0.88 0.08 0.05
Matches are distributed among these distances:
41 22 0.63
42 6 0.17
43 7 0.20
ACGTcount: A:0.38, C:0.19, G:0.19, T:0.25
Consensus pattern (43 bp):
TGTCAATGGCCGGCACCACCAGTACGAAAAAATAAATTTTGTA
Found at i:30597095 original size:47 final size:46
Alignment explanation
Indices: 30596971--30597193 Score: 178
Period size: 49 Copynumber: 4.6 Consensus size: 46
30596961 ATAAATAGGT
** * * *
30596971 CATTGACAGGCCAACACCCAAATTTTTTTTTTCGTATTGGTGGTGTCAGT
1 CATTGACAGGCCAACACCC-AA--TTTTTTTTCGTA-TACTGGTGCCGGC
* * * * ** *
30597021 CATTGACAAGTCAGCACCTAAAATTTTTTTTCGTACTGGTGGTGTCGGC
1 CATTGACAGGCCAACACC--CAATTTTTTTTCGTA-TACTGGTGCCGGC
* ** *
30597070 TATTGACAGGCCAACACCCAATTTTTTTTTCGTATACTAATGCCGAC
1 CATTGACAGGCCAACACCCAA-TTTTTTTTCGTATACTGGTGCCGGC
* *
30597117 CATTGACAATG-CAGCACCCAATTTTTTTTCGTATACTGGTGCCGGC
1 CATTGAC-AGGCCAACACCCAATTTTTTTTCGTATACTGGTGCCGGC
30597163 CATTGACAGGCCAACACCCCAAATTTTTTTT
1 CATTGACAGGCCAACA-CCC-AATTTTTTTT
30597194 ATTTTTTTAA
Statistics
Matches: 140, Mismatches: 26, Indels: 16
0.77 0.14 0.09
Matches are distributed among these distances:
45 2 0.01
46 33 0.24
47 27 0.19
48 24 0.17
49 37 0.26
50 15 0.11
51 2 0.01
ACGTcount: A:0.24, C:0.24, G:0.17, T:0.35
Consensus pattern (46 bp):
CATTGACAGGCCAACACCCAATTTTTTTTCGTATACTGGTGCCGGC
Found at i:30597746 original size:46 final size:46
Alignment explanation
Indices: 30597677--30597808 Score: 158
Period size: 46 Copynumber: 2.8 Consensus size: 46
30597667 AATTTTTTTT
* *
30597677 AAAAAAATTGGGGTGCTGGCTTGTCAATGGCCGGCACCACCAGTA-
1 AAAAAAATTTGGGTGCTGGCTTGTCAATGGCCGGCACCACCAATAC
* * *
30597722 AAAAAAATTTTGGGTGCTGACTTGTCAATGGCCGGCACTAGCAATAC
1 AAAAAAA-TTTGGGTGCTGGCTTGTCAATGGCCGGCACCACCAATAC
* * * *
30597769 GAAAAAAATTTGTGTGTTGGCCTGTCAATGGCCGACACCA
1 -AAAAAAATTTGGGTGCTGGCTTGTCAATGGCCGGCACCA
30597809 GCATTACGAA
Statistics
Matches: 73, Mismatches: 11, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
45 7 0.10
46 33 0.45
47 26 0.36
48 7 0.10
ACGTcount: A:0.30, C:0.20, G:0.26, T:0.23
Consensus pattern (46 bp):
AAAAAAATTTGGGTGCTGGCTTGTCAATGGCCGGCACCACCAATAC
Found at i:30597774 original size:47 final size:47
Alignment explanation
Indices: 30597677--30597820 Score: 175
Period size: 47 Copynumber: 3.1 Consensus size: 47
30597667 AATTTTTTTT
* * *
30597677 AAAAAAATTGGGGTGCTGGCTTGTCAATGGCCGGCACCACCAGTA--
1 AAAAAAATTTGGGTGCTGGCTTGTCAATGGCCGGCACCAGCAATACG
* *
30597722 AAAAAAATTTTGGGTGCTGACTTGTCAATGGCCGGCACTAGCAATACG
1 AAAAAAA-TTTGGGTGCTGGCTTGTCAATGGCCGGCACCAGCAATACG
* * * * *
30597770 AAAAAAATTTGTGTGTTGGCCTGTCAATGGCCGACACCAGCATTACG
1 AAAAAAATTTGGGTGCTGGCTTGTCAATGGCCGGCACCAGCAATACG
30597817 AAAA
1 AAAA
30597821 GAAAATTTTT
Statistics
Matches: 84, Mismatches: 12, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
45 7 0.08
46 33 0.39
47 37 0.44
48 7 0.08
ACGTcount: A:0.32, C:0.20, G:0.25, T:0.23
Consensus pattern (47 bp):
AAAAAAATTTGGGTGCTGGCTTGTCAATGGCCGGCACCAGCAATACG
Found at i:30597852 original size:53 final size:48
Alignment explanation
Indices: 30597677--30597854 Score: 157
Period size: 46 Copynumber: 3.7 Consensus size: 48
30597667 AATTTTTTTT
* * * * * *
30597677 AAAAAAA-TTGGGGTGCTGGCTTGTCAATGGCCGGCACCACCAGTA--
1 AAAAAAATTTTGGGTGTTGACTTGTCAATGGCCGACACCAGCAATACG
* * *
30597722 AAAAAAATTTTGGGTGCTGACTTGTCAATGGCCGGCACTAGCAATACG
1 AAAAAAATTTTGGGTGTTGACTTGTCAATGGCCGACACCAGCAATACG
* * * *
30597770 AAAAAAA-TTTGTGTGTTGGCCTGTCAATGGCCGACACCAGCATTACG
1 AAAAAAATTTTGGGTGTTGACTTGTCAATGGCCGACACCAGCAATACG
*
30597817 AAAAGAAAATTTTTTTGGGTGTTGACTTGTTAATGGCC
1 -AAA-AAAA---TTTTGGGTGTTGACTTGTCAATGGCC
30597855 TATTTATAGT
Statistics
Matches: 108, Mismatches: 16, Indels: 10
0.81 0.12 0.07
Matches are distributed among these distances:
45 7 0.06
46 33 0.31
47 33 0.31
48 10 0.09
49 4 0.04
53 21 0.19
ACGTcount: A:0.30, C:0.18, G:0.25, T:0.27
Consensus pattern (48 bp):
AAAAAAATTTTGGGTGTTGACTTGTCAATGGCCGACACCAGCAATACG
Found at i:30598080 original size:22 final size:21
Alignment explanation
Indices: 30598052--30598109 Score: 62
Period size: 21 Copynumber: 2.7 Consensus size: 21
30598042 CCCTCTTTTT
30598052 TTTCATTCAAAATTTATTTTAA
1 TTTCATT-AAAATTTATTTTAA
*** *
30598074 TTTCATTACTTTTTATTTTAG
1 TTTCATTAAAATTTATTTTAA
30598095 TTTCATTTAAAATTT
1 TTTCA-TTAAAATTT
30598110 TCTAATATCA
Statistics
Matches: 28, Mismatches: 7, Indels: 2
0.76 0.19 0.05
Matches are distributed among these distances:
21 15 0.54
22 13 0.46
ACGTcount: A:0.29, C:0.09, G:0.02, T:0.60
Consensus pattern (21 bp):
TTTCATTAAAATTTATTTTAA
Found at i:30598357 original size:48 final size:48
Alignment explanation
Indices: 30598295--30598538 Score: 251
Period size: 48 Copynumber: 5.0 Consensus size: 48
30598285 TTTTTTTTGG
* *
30598295 TTCGTACTGTTGGTGTCGGCCATTGACAGGCCAGCACCAAAATTTTTT
1 TTCGTACTGGTGGTGCCGGCCATTGACAGGCCAGCACCAAAATTTTTT
* * *
30598343 TTCGTACTGGTGGTGCTGACCATTGACAGGCCAGCA-CACAATTTTTT
1 TTCGTACTGGTGGTGCCGGCCATTGACAGGCCAGCACCAAAATTTTTT
* *
30598390 TTCGTACTGGTGGTGCCGGCCATTGACAAGCTAGCACCCAAAAATTTTTTT
1 TTCGTACTGGTGGTGCCGGCCATTGACAGGCCAGCA-CC-AAAA-TTTTTT
** * * **
30598441 TTTATACTAGTGGTGCCGGTCATTGACAGAG-CAGCACCTAATTTTTTTT
1 TTCGTACTGGTGGTGCCGGCCATTGACAG-GCCAGCACC-AAAATTTTTT
** * * * *
30598490 TTCGTA-TACTGGTGCCAGCCATTGACAGTCCAACACCCAAATTTTTT
1 TTCGTACTGGTGGTGCCGGCCATTGACAGGCCAGCACCAAAATTTTTT
30598537 TT
1 TT
30598539 TTGTTTTTTT
Statistics
Matches: 161, Mismatches: 29, Indels: 13
0.79 0.14 0.06
Matches are distributed among these distances:
47 51 0.32
48 57 0.35
49 11 0.07
50 7 0.04
51 34 0.21
52 1 0.01
ACGTcount: A:0.23, C:0.23, G:0.20, T:0.34
Consensus pattern (48 bp):
TTCGTACTGGTGGTGCCGGCCATTGACAGGCCAGCACCAAAATTTTTT
Found at i:30598486 original size:95 final size:93
Alignment explanation
Indices: 30598295--30598487 Score: 219
Period size: 98 Copynumber: 2.0 Consensus size: 93
30598285 TTTTTTTTGG
* * * * * *
30598295 TTCGTACTGTTGGTGTCGGCCATTGACAGGCCAGCACCAAAATTTTTTTTCGTACTGGTGGTGCT
1 TTCGTACTGGTGGTGCCGGCCATTGACAAGCCAGCACCAAAATTTTTTTTCATACTAGTGGTGCC
30598360 GACCATTGACAGGCCAGCACACAATTTTTT
66 GACCATTGACAGGCCAGCACACAA--TTTT
* *
30598390 TTCGTACTGGTGGTGCCGGCCATTGACAAGCTAGCACCCAAAAATTTTTTTTTTATACTAGTGGT
1 TTCGTACTGGTGGTGCCGGCCATTGACAAGCCAGCA-CC-AAAA-TTTTTTTTCATACTAGTGGT
**
30598455 GCCGGTCATTGACAGAG-CAGCAC-CTAATTTT
63 GCCGACCATTGACAG-GCCAGCACAC-AATTTT
30598486 TT
1 TT
30598488 TTTTCGTATA
Statistics
Matches: 83, Mismatches: 10, Indels: 9
0.81 0.10 0.09
Matches are distributed among these distances:
95 32 0.39
96 8 0.10
97 5 0.06
98 37 0.45
99 1 0.01
ACGTcount: A:0.22, C:0.22, G:0.22, T:0.33
Consensus pattern (93 bp):
TTCGTACTGGTGGTGCCGGCCATTGACAAGCCAGCACCAAAATTTTTTTTCATACTAGTGGTGCC
GACCATTGACAGGCCAGCACACAATTTT
Done.