Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr09 ID=Chr09-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 70713020
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 1142373 characters in sequence are not A, C, G, or T
File 93 of 226
Found at i:32267953 original size:22 final size:20
Alignment explanation
Indices: 32267923--32267962 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
32267913 CAAACTTATT
**
32267923 TTTTTAAAATTATAAAAATA
1 TTTTTAAAAAAATAAAAATA
32267943 TTTTTAAAAAAATAAAAATA
1 TTTTTAAAAAAATAAAAATA
32267963 AAATTAAAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (20 bp):
TTTTTAAAAAAATAAAAATA
Found at i:32268704 original size:17 final size:17
Alignment explanation
Indices: 32268679--32268712 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
32268669 ATAAATTTAA
*
32268679 ATAATATTTTAAATTTT
1 ATAAAATTTTAAATTTT
*
32268696 ATAAAATTTTTAATTTT
1 ATAAAATTTTAAATTTT
32268713 TTTATAAAAT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (17 bp):
ATAAAATTTTAAATTTT
Found at i:32268706 original size:18 final size:18
Alignment explanation
Indices: 32268643--32268727 Score: 55
Period size: 20 Copynumber: 4.3 Consensus size: 18
32268633 GGTTACTATT
* *
32268643 ATTTTTGAATTTTATTTAAT
1 ATTTTTAAATTTTA--TAAA
*
32268663 ATTTTTATAAATTTA-AATA
1 ATTTTTA-AATTTTATAA-A
32268682 ATATTTTAAATTTTATAAA
1 AT-TTTTAAATTTTATAAA
*
32268701 ATTTTTAATTTTTTTATAAA
1 ATTTTTAA--ATTTTATAAA
32268721 ATATTTT
1 AT-TTTT
32268728 TTGTCATTAA
Statistics
Matches: 53, Mismatches: 5, Indels: 13
0.75 0.07 0.18
Matches are distributed among these distances:
18 8 0.15
19 11 0.21
20 24 0.45
21 10 0.19
ACGTcount: A:0.39, C:0.00, G:0.01, T:0.60
Consensus pattern (18 bp):
ATTTTTAAATTTTATAAA
Found at i:32269614 original size:27 final size:27
Alignment explanation
Indices: 32269579--32269723 Score: 132
Period size: 27 Copynumber: 5.4 Consensus size: 27
32269569 AAGTACCTTA
* *
32269579 TGTTTACTGTCCCGACAGACTATTCCT
1 TGTTTACTGTCCCGACGGACTATCCCT
*
32269606 TGTATACTGTCCCAGA-GGACTA-CCCT
1 TGTTTACTGTCCC-GACGGACTATCCCT
* *
32269632 ATGTTTACTATCCCGACGGACTATCCCA
1 -TGTTTACTGTCCCGACGGACTATCCCT
* * * *
32269660 TGTTTACTGTCTCGTCGGACTACCCCA
1 TGTTTACTGTCCCGACGGACTATCCCT
* * * * *
32269687 TGTTTACTATCCTGACGGGCTACCCCG
1 TGTTTACTGTCCCGACGGACTATCCCT
32269714 TGTTTACTGT
1 TGTTTACTGT
32269724 TGCGGTGGAC
Statistics
Matches: 97, Mismatches: 17, Indels: 8
0.80 0.14 0.07
Matches are distributed among these distances:
26 5 0.05
27 87 0.90
28 5 0.05
ACGTcount: A:0.19, C:0.30, G:0.18, T:0.33
Consensus pattern (27 bp):
TGTTTACTGTCCCGACGGACTATCCCT
Found at i:32269668 original size:54 final size:54
Alignment explanation
Indices: 32269572--32269723 Score: 171
Period size: 54 Copynumber: 2.8 Consensus size: 54
32269562 CCTGACGAAG
* * * * * *
32269572 TACCTTATGTTTACTGTCCCGACAGACTATTCCTTGTATACTGTCCCAG-AGGAC
1 TACCCTATGTTTACTATCCCGACGGACTATCCCATGTTTACTGTCCC-GTAGGAC
* *
32269626 TACCCTATGTTTACTATCCCGACGGACTATCCCATGTTTACTGTCTCGTCGGAC
1 TACCCTATGTTTACTATCCCGACGGACTATCCCATGTTTACTGTCCCGTAGGAC
* * * * *
32269680 TACCCCATGTTTACTATCCTGACGGGCTACCCCGTGTTTACTGT
1 TACCCTATGTTTACTATCCCGACGGACTATCCCATGTTTACTGT
32269724 TGCGGTGGAC
Statistics
Matches: 84, Mismatches: 13, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
53 1 0.01
54 83 0.99
ACGTcount: A:0.19, C:0.30, G:0.17, T:0.34
Consensus pattern (54 bp):
TACCCTATGTTTACTATCCCGACGGACTATCCCATGTTTACTGTCCCGTAGGAC
Found at i:32273641 original size:24 final size:24
Alignment explanation
Indices: 32273606--32273677 Score: 117
Period size: 24 Copynumber: 3.0 Consensus size: 24
32273596 TACTTGGGTA
32273606 ATTTTCCATCAATTCATCCTTTGC
1 ATTTTCCATCAATTCATCCTTTGC
*
32273630 ATTTTCCGTCAATTCATCCTTTGC
1 ATTTTCCATCAATTCATCCTTTGC
* *
32273654 ATTTACCTTCAATTCATCCTTTGC
1 ATTTTCCATCAATTCATCCTTTGC
32273678 CACAGAACGA
Statistics
Matches: 45, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
24 45 1.00
ACGTcount: A:0.19, C:0.29, G:0.06, T:0.46
Consensus pattern (24 bp):
ATTTTCCATCAATTCATCCTTTGC
Found at i:32274060 original size:14 final size:15
Alignment explanation
Indices: 32274041--32274075 Score: 63
Period size: 14 Copynumber: 2.4 Consensus size: 15
32274031 CTTTTGCAAT
32274041 TTAGTCCCTCACT-A
1 TTAGTCCCTCACTAA
32274055 TTAGTCCCTCACTAA
1 TTAGTCCCTCACTAA
32274070 TTAGTC
1 TTAGTC
32274076 TACCAAATGA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 13 0.65
15 7 0.35
ACGTcount: A:0.23, C:0.31, G:0.09, T:0.37
Consensus pattern (15 bp):
TTAGTCCCTCACTAA
Found at i:32282057 original size:25 final size:27
Alignment explanation
Indices: 32282007--32282057 Score: 63
Period size: 25 Copynumber: 2.0 Consensus size: 27
32281997 CCAAATTATG
*
32282007 GCTCTAAACACAACATATACTATATAT
1 GCTCTAAACACAACATATAATATATAT
32282034 GCTC-AAAC-CAACATTATAAT-TATA
1 GCTCTAAACACAACA-TATAATATATA
32282058 ACTCCATTAC
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
25 9 0.41
26 9 0.41
27 4 0.18
ACGTcount: A:0.45, C:0.22, G:0.04, T:0.29
Consensus pattern (27 bp):
GCTCTAAACACAACATATAATATATAT
Found at i:32285615 original size:2 final size:2
Alignment explanation
Indices: 32285608--32285686 Score: 158
Period size: 2 Copynumber: 39.5 Consensus size: 2
32285598 TTAAAAGATA
32285608 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
32285650 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
32285687 GTTAAAGCAG
Statistics
Matches: 77, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 77 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:32286090 original size:18 final size:18
Alignment explanation
Indices: 32286067--32286104 Score: 76
Period size: 18 Copynumber: 2.1 Consensus size: 18
32286057 AAGTAATCAA
32286067 GTAAGCGACTTGGTTGAT
1 GTAAGCGACTTGGTTGAT
32286085 GTAAGCGACTTGGTTGAT
1 GTAAGCGACTTGGTTGAT
32286103 GT
1 GT
32286105 CTTAAGTTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.21, C:0.11, G:0.34, T:0.34
Consensus pattern (18 bp):
GTAAGCGACTTGGTTGAT
Found at i:32287486 original size:17 final size:18
Alignment explanation
Indices: 32287464--32287497 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
32287454 GAACGAGGGA
32287464 AAAAGAA-AAAGGGAAAG
1 AAAAGAAGAAAGGGAAAG
32287481 AAAAGAAGAAAGGGAAA
1 AAAAGAAGAAAGGGAAA
32287498 AGTAGGGATT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 7 0.44
18 9 0.56
ACGTcount: A:0.71, C:0.00, G:0.29, T:0.00
Consensus pattern (18 bp):
AAAAGAAGAAAGGGAAAG
Found at i:32288042 original size:16 final size:15
Alignment explanation
Indices: 32288021--32288060 Score: 62
Period size: 16 Copynumber: 2.5 Consensus size: 15
32288011 TTATGTGTAT
32288021 GGTAAGTAAATAATAA
1 GGTAAGTAAAT-ATAA
32288037 GGTAAGTGAAATATAA
1 GGTAAGT-AAATATAA
32288053 GGTAAGTA
1 GGTAAGTA
32288061 TTATTATTAA
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
15 1 0.04
16 18 0.78
17 4 0.17
ACGTcount: A:0.50, C:0.00, G:0.25, T:0.25
Consensus pattern (15 bp):
GGTAAGTAAATATAA
Found at i:32288179 original size:36 final size:36
Alignment explanation
Indices: 32288112--32288209 Score: 99
Period size: 36 Copynumber: 2.6 Consensus size: 36
32288102 ATGTGTGGAA
* *
32288112 TTGAAATGAATAT-TGACCTGAAAATGGAAAAGTAAAT
1 TTGAAATGAA-ATGTGA-TTGAAAATGAAAAAGTAAAT
* * * *
32288149 TTGAATTGAATTGTGATTGAAAGTGAAAAAGTGAAT
1 TTGAAATGAAATGTGATTGAAAATGAAAAAGTAAAT
32288185 TTGAAATGAAATGTGAATTTGAAAA
1 TTGAAATGAAATGTG-A-TTGAAAA
32288210 GTATGTGTTG
Statistics
Matches: 49, Mismatches: 9, Indels: 5
0.78 0.14 0.08
Matches are distributed among these distances:
36 30 0.61
37 13 0.27
38 6 0.12
ACGTcount: A:0.46, C:0.02, G:0.21, T:0.31
Consensus pattern (36 bp):
TTGAAATGAAATGTGATTGAAAATGAAAAAGTAAAT
Found at i:32288200 original size:18 final size:18
Alignment explanation
Indices: 32288146--32288208 Score: 67
Period size: 18 Copynumber: 3.5 Consensus size: 18
32288136 TGGAAAAGTA
* *
32288146 AATTTGAATTGAATTGTG
1 AATTTGAAATGAAATGTG
*
32288164 -A-TTGAAAGTGAAAAAGTG
1 AATTTGAAA-TG-AAATGTG
32288182 AATTTGAAATGAAATGTG
1 AATTTGAAATGAAATGTG
32288200 AATTTGAAA
1 AATTTGAAA
32288209 AGTATGTGTT
Statistics
Matches: 37, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
16 5 0.14
17 3 0.08
18 20 0.54
19 3 0.08
20 6 0.16
ACGTcount: A:0.44, C:0.00, G:0.22, T:0.33
Consensus pattern (18 bp):
AATTTGAAATGAAATGTG
Found at i:32288421 original size:23 final size:23
Alignment explanation
Indices: 32288391--32288457 Score: 93
Period size: 23 Copynumber: 3.0 Consensus size: 23
32288381 GCCTTATCGA
*
32288391 TCAGGCACTTTATGTGTCATATC
1 TCAGGCACTTTATGTGTCGTATC
32288414 TCAGGCACTTTATGTGTCGTA--
1 TCAGGCACTTTATGTGTCGTATC
* *
32288435 TCAGGCACCTCATGTGTCGTATC
1 TCAGGCACTTTATGTGTCGTATC
32288458 AGACACTTCG
Statistics
Matches: 39, Mismatches: 3, Indels: 4
0.85 0.07 0.09
Matches are distributed among these distances:
21 19 0.49
23 20 0.51
ACGTcount: A:0.19, C:0.24, G:0.21, T:0.36
Consensus pattern (23 bp):
TCAGGCACTTTATGTGTCGTATC
Found at i:32288440 original size:21 final size:21
Alignment explanation
Indices: 32288390--32288477 Score: 104
Period size: 21 Copynumber: 4.1 Consensus size: 21
32288380 GGCCTTATCG
* *
32288390 ATCAGGCACTTTATGTGTCAT
1 ATCAGGCACTTCATGTGTCGT
*
32288411 ATCTCAGGCACTTTATGTGTCGT
1 A--TCAGGCACTTCATGTGTCGT
*
32288434 ATCAGGCACCTCATGTGTCGT
1 ATCAGGCACTTCATGTGTCGT
* *
32288455 ATCAGACACTTCGTGTGTCGT
1 ATCAGGCACTTCATGTGTCGT
32288476 AT
1 AT
32288478 ACTGATCAGG
Statistics
Matches: 59, Mismatches: 6, Indels: 4
0.86 0.09 0.06
Matches are distributed among these distances:
21 39 0.66
23 20 0.34
ACGTcount: A:0.20, C:0.23, G:0.22, T:0.35
Consensus pattern (21 bp):
ATCAGGCACTTCATGTGTCGT
Found at i:32289363 original size:12 final size:11
Alignment explanation
Indices: 32289346--32289374 Score: 58
Period size: 11 Copynumber: 2.6 Consensus size: 11
32289336 TGTCGAAATT
32289346 AAAAAAAAAAC
1 AAAAAAAAAAC
32289357 AAAAAAAAAAC
1 AAAAAAAAAAC
32289368 AAAAAAA
1 AAAAAAA
32289375 TGAAGCCAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.93, C:0.07, G:0.00, T:0.00
Consensus pattern (11 bp):
AAAAAAAAAAC
Found at i:32293541 original size:16 final size:16
Alignment explanation
Indices: 32293519--32293558 Score: 64
Period size: 16 Copynumber: 2.5 Consensus size: 16
32293509 TTAATAATAA
32293519 TACTTACCTTA-TATT
1 TACTTACCTTATTATT
32293534 TCACTTACCTTATTATT
1 T-ACTTACCTTATTATT
32293551 TACTTACC
1 TACTTACC
32293559 ATACACATAA
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
15 1 0.04
16 17 0.74
17 5 0.22
ACGTcount: A:0.25, C:0.25, G:0.00, T:0.50
Consensus pattern (16 bp):
TACTTACCTTATTATT
Found at i:32293971 original size:40 final size:40
Alignment explanation
Indices: 32293916--32294033 Score: 139
Period size: 40 Copynumber: 3.0 Consensus size: 40
32293906 GCGTTTGGAA
* * * *
32293916 CAAAAGCGCCACTAAAAATCGAGCATTAGCGGCGTTTTTG
1 CAAAAGCGCCGCTAAAAATAGAGCATCAGCGGCGTTTTTC
* * *
32293956 CAAAAGCGCCGCTAAAGATTGAGCATCAGCGGCGTATTTC
1 CAAAAGCGCCGCTAAAAATAGAGCATCAGCGGCGTTTTTC
* * *
32293996 CAAAATCGTCGCTAAAAATAG-GAATCAGCGGCGTTTTT
1 CAAAAGCGCCGCTAAAAATAGAGCATCAGCGGCGTTTTT
32294034 TATAAAGCGC
Statistics
Matches: 66, Mismatches: 12, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
39 15 0.23
40 51 0.77
ACGTcount: A:0.32, C:0.22, G:0.23, T:0.23
Consensus pattern (40 bp):
CAAAAGCGCCGCTAAAAATAGAGCATCAGCGGCGTTTTTC
Found at i:32294153 original size:41 final size:41
Alignment explanation
Indices: 32294081--32294277 Score: 168
Period size: 41 Copynumber: 4.8 Consensus size: 41
32294071 GTTTTTCGAG
* * *
32294081 CCTTTAGCGGCGTTTTTG-CGGATGCGACGCTAATGATCGGA
1 CCTTTAGCGGCGTTTTTGTC-TAAGCGCCGCTAATGATCGGA
* * *
32294122 CCTTTAACGGCGTTTTTAGT-TAAGCGCCGCTAATGCTCGGG
1 CCTTTAGCGGCGTTTTT-GTCTAAGCGCCGCTAATGATCGGA
* * * * * *
32294163 CCTTTAGTGGCATTTCTGTCTATGCGCCGCTACTGCTCGG-
1 CCTTTAGCGGCGTTTTTGTCTAAGCGCCGCTAATGATCGGA
* * * *
32294203 GCTTTAGTGGCGCTTTTGTCTAAGCGCCGCTAATGAAT-GTA
1 CCTTTAGCGGCGTTTTTGTCTAAGCGCCGCTAATG-ATCGGA
* * *
32294244 GCTTTAGCGGCGTTTTTGACGAAGCGCCGCTAAT
1 CCTTTAGCGGCGTTTTTGTCTAAGCGCCGCTAAT
32294278 AGTAACAAAA
Statistics
Matches: 127, Mismatches: 24, Indels: 10
0.79 0.15 0.06
Matches are distributed among these distances:
40 32 0.25
41 94 0.74
42 1 0.01
ACGTcount: A:0.16, C:0.24, G:0.28, T:0.32
Consensus pattern (41 bp):
CCTTTAGCGGCGTTTTTGTCTAAGCGCCGCTAATGATCGGA
Found at i:32294223 original size:40 final size:41
Alignment explanation
Indices: 32294142--32294237 Score: 142
Period size: 40 Copynumber: 2.4 Consensus size: 41
32294132 CGTTTTTAGT
32294142 TAAGCGCCGCTAATGCTCGGGCCTTTAGTGGCATTTCTGTC
1 TAAGCGCCGCTAATGCTCGGGCCTTTAGTGGCATTTCTGTC
* * *
32294183 TATGCGCCGCTACTGCTCGGG-CTTTAGTGGCGCTTT-TGTC
1 TAAGCGCCGCTAATGCTCGGGCCTTTAGTGGC-ATTTCTGTC
32294223 TAAGCGCCGCTAATG
1 TAAGCGCCGCTAATG
32294238 AATGTAGCTT
Statistics
Matches: 49, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
40 27 0.55
41 22 0.45
ACGTcount: A:0.14, C:0.27, G:0.28, T:0.31
Consensus pattern (41 bp):
TAAGCGCCGCTAATGCTCGGGCCTTTAGTGGCATTTCTGTC
Found at i:32294995 original size:27 final size:26
Alignment explanation
Indices: 32294957--32295007 Score: 75
Period size: 27 Copynumber: 1.9 Consensus size: 26
32294947 AATAAACAAA
* *
32294957 TAAATAAGTAGGTAATTATTTATTTGT
1 TAAATAAATAGGT-ATTAATTATTTGT
32294984 TAAATAAATAGGTATTAATTATTT
1 TAAATAAATAGGTATTAATTATTT
32295008 AAATGTAAGA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
26 10 0.45
27 12 0.55
ACGTcount: A:0.41, C:0.00, G:0.12, T:0.47
Consensus pattern (26 bp):
TAAATAAATAGGTATTAATTATTTGT
Found at i:32296356 original size:27 final size:27
Alignment explanation
Indices: 32296326--32296377 Score: 79
Period size: 27 Copynumber: 1.9 Consensus size: 27
32296316 AATAAACAAA
*
32296326 TAAATAAGTAGGTAA-TAATTTATTTGT
1 TAAATAAATAGGTAATTAA-TTATTTGT
32296353 TAAATAAATAGGTAATTAATTATTT
1 TAAATAAATAGGTAATTAATTATTT
32296378 AAATGTAAGA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
27 20 0.87
28 3 0.13
ACGTcount: A:0.44, C:0.00, G:0.12, T:0.44
Consensus pattern (27 bp):
TAAATAAATAGGTAATTAATTATTTGT
Found at i:32297711 original size:18 final size:18
Alignment explanation
Indices: 32297688--32297722 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
32297678 TGATGAAGCT
32297688 GATGATGACTCCG-ATGAA
1 GATGATGA-TCCGTATGAA
32297706 GATGATGATCCGTATGA
1 GATGATGATCCGTATGA
32297723 GGCGGGCTTG
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 4 0.25
18 12 0.75
ACGTcount: A:0.31, C:0.14, G:0.29, T:0.26
Consensus pattern (18 bp):
GATGATGATCCGTATGAA
Found at i:32301547 original size:21 final size:21
Alignment explanation
Indices: 32301521--32301569 Score: 71
Period size: 21 Copynumber: 2.3 Consensus size: 21
32301511 CTACAACTTA
* *
32301521 AAGCAGAGGCGGCAGCGAGGG
1 AAGCAGAGGCGGCAGCAAGAG
*
32301542 AAGCAGAGGCTGCAGCAAGAG
1 AAGCAGAGGCGGCAGCAAGAG
32301563 AAGCAGA
1 AAGCAGA
32301570 TGTTCAAAAG
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.37, C:0.18, G:0.43, T:0.02
Consensus pattern (21 bp):
AAGCAGAGGCGGCAGCAAGAG
Found at i:32302089 original size:43 final size:42
Alignment explanation
Indices: 32301974--32302106 Score: 196
Period size: 42 Copynumber: 3.1 Consensus size: 42
32301964 TAAAGAACAT
* *
32301974 GCGGCGCTTA-ATAAAAAACGCCGCTAAAGATCATGTTCTTTA
1 GCGGCGCTTAGA-AAAAAACGCCGCTAAAGAACATGATCTTTA
* *
32302016 GCGGCGCTTAGGAAAAAACGCCGCTAAAGAACATCATCTTTA
1 GCGGCGCTTAGAAAAAAACGCCGCTAAAGAACATGATCTTTA
*
32302058 GTGGCGCTTAGAAAAAAAGCGCCGCTAAAGAACATGATCTTTA
1 GCGGCGCTTAGAAAAAAA-CGCCGCTAAAGAACATGATCTTTA
32302101 GCGGCG
1 GCGGCG
32302107 TTTTTGTTTG
Statistics
Matches: 81, Mismatches: 8, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
42 53 0.65
43 28 0.35
ACGTcount: A:0.34, C:0.22, G:0.23, T:0.21
Consensus pattern (42 bp):
GCGGCGCTTAGAAAAAAACGCCGCTAAAGAACATGATCTTTA
Found at i:32303156 original size:19 final size:20
Alignment explanation
Indices: 32303127--32303166 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 20
32303117 ATAAATGGAC
**
32303127 TATTGTATTTGGTTTTTATT
1 TATTGTATTTGAATTTTATT
32303147 TATT-TATTTGAATTTTATT
1 TATTGTATTTGAATTTTATT
32303166 T
1 T
32303167 GTCTTGGGCC
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 14 0.78
20 4 0.22
ACGTcount: A:0.20, C:0.00, G:0.10, T:0.70
Consensus pattern (20 bp):
TATTGTATTTGAATTTTATT
Found at i:32311676 original size:34 final size:34
Alignment explanation
Indices: 32311638--32311702 Score: 112
Period size: 34 Copynumber: 1.9 Consensus size: 34
32311628 CTTAAAGTTT
*
32311638 TAGTATGTGAACCCCCATATTATATAGTATGACA
1 TAGTATGCGAACCCCCATATTATATAGTATGACA
*
32311672 TAGTATGCGAACCCCCATGTTATATAGTATG
1 TAGTATGCGAACCCCCATATTATATAGTATG
32311703 TGATTTAATA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
34 29 1.00
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.32
Consensus pattern (34 bp):
TAGTATGCGAACCCCCATATTATATAGTATGACA
Found at i:32311755 original size:15 final size:15
Alignment explanation
Indices: 32311726--32311819 Score: 66
Period size: 15 Copynumber: 6.4 Consensus size: 15
32311716 GCGAACCTTG
* *
32311726 TATGTGTGGATCCTA
1 TATGTGTGAACCCTA
*
32311741 TATGTGGGAACCCTA
1 TATGTGTGAACCCTA
** *
32311756 TACATGTGAACTCTA
1 TATGTGTGAACCCTA
* * *
32311771 GATGCGTGAACCTTA
1 TATGTGTGAACCCTA
* *
32311786 GATGTG-CAA-CCTA
1 TATGTGTGAACCCTA
32311799 TATGTGTGAACCCTA
1 TATGTGTGAACCCTA
*
32311814 CATGTG
1 TATGTG
32311820 AACATGTCAT
Statistics
Matches: 58, Mismatches: 19, Indels: 4
0.72 0.23 0.05
Matches are distributed among these distances:
13 8 0.14
14 4 0.07
15 46 0.79
ACGTcount: A:0.27, C:0.19, G:0.23, T:0.31
Consensus pattern (15 bp):
TATGTGTGAACCCTA
Found at i:32311791 original size:28 final size:27
Alignment explanation
Indices: 32311756--32311822 Score: 80
Period size: 28 Copynumber: 2.4 Consensus size: 27
32311746 GGGAACCCTA
*
32311756 TACATGTGAACTCTAGATGCGTGAACCT
1 TACATGTGAAC-CTAGATGCGTGAACCC
* * *
32311784 TAGATGTGCAACCTATATGTGTGAACCC
1 TACATGTG-AACCTAGATGCGTGAACCC
32311812 TACATGTGAAC
1 TACATGTGAAC
32311823 ATGTCATGTA
Statistics
Matches: 33, Mismatches: 5, Indels: 3
0.80 0.12 0.07
Matches are distributed among these distances:
27 3 0.09
28 27 0.82
29 3 0.09
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (27 bp):
TACATGTGAACCTAGATGCGTGAACCC
Found at i:32313503 original size:151 final size:147
Alignment explanation
Indices: 32313259--32313530 Score: 318
Period size: 151 Copynumber: 1.8 Consensus size: 147
32313249 TCCATTTATT
* *
32313259 TATTTAACTTCAATTTTAATCAAATTTACATTAGTTTCTATTTATTTATTTACTTAATATCTTCT
1 TATTTAACTTCAATTTTAATCAAATTTACATTAGTTTATATTTATTTATCTACTTAATATCTTCT
* * * *
32313324 AAATTGATTTGTTCATTTTAATTTTTACCCTT-ATTAATGTCATTTTTATTTCATTACCTATTTA
66 AAATTGATTTGTT-ATTATAATTCTTA-CCTTCATTAAAGTCATTTTTACTTCATTACCTATTTA
32313388 TTTATTATTTTTTTCTGAA
129 TTTATTATTTTTTTCTGAA
* * * *
32313407 TATTTAACTTCAATTTTTAATCAAATTTATATTAGTTTTTATATTTGTTTATCTACTTAGTATTT
1 TATTTAACTTCAA-TTTTAATCAAATTTACATTAG--TTTATATTTATTTATCTACTTAATATCT
** *
32313472 TCT-TTTTAGTATACTTGTT-TTAT-ATTCTTACCTTCATTAAAGTCATTTTTGCTTCATTA
63 TCTAAATT-G-AT--TTGTTATTATAATTCTTACCTTCATTAAAGTCATTTTTACTTCATTA
32313531 TTTACTTATT
Statistics
Matches: 103, Mismatches: 13, Indels: 13
0.80 0.10 0.10
Matches are distributed among these distances:
148 13 0.13
149 20 0.19
150 6 0.06
151 54 0.52
152 5 0.05
154 5 0.05
ACGTcount: A:0.27, C:0.11, G:0.04, T:0.57
Consensus pattern (147 bp):
TATTTAACTTCAATTTTAATCAAATTTACATTAGTTTATATTTATTTATCTACTTAATATCTTCT
AAATTGATTTGTTATTATAATTCTTACCTTCATTAAAGTCATTTTTACTTCATTACCTATTTATT
TATTATTTTTTTCTGAA
Found at i:32313597 original size:21 final size:21
Alignment explanation
Indices: 32313573--32313619 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
32313563 AAAAATTTAG
32313573 ATTATTATAATGGTTATTATC
1 ATTATTATAATGGTTATTATC
* * * *
32313594 ATTACTGTTATGGTTATTTTC
1 ATTATTATAATGGTTATTATC
32313615 ATTAT
1 ATTAT
32313620 CAATATTTAT
Statistics
Matches: 21, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.28, C:0.06, G:0.11, T:0.55
Consensus pattern (21 bp):
ATTATTATAATGGTTATTATC
Found at i:32319650 original size:89 final size:88
Alignment explanation
Indices: 32319499--32319954 Score: 538
Period size: 89 Copynumber: 5.1 Consensus size: 88
32319489 AGTAGATTGA
* * * * *
32319499 TTATCTCCCTGAGAAACAGTGGAGTAGGTTGAAAATAACAGATCTTGTCTTCTTGTATTGGCAGC
1 TTATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAAATAGCAGATCTTGTCTTCCTATATTGGCAGC
*
32319564 GAAGTAGATCGAAGATATAAAGCC
66 GAAGTAGATCGAAGA-ACAAAGCC
*
32319588 TTATCTCCCTGAGCAGTAGTGGAGTAGGTTGAAAATAGCAGATCTTGTCTTCCTATATTGGCAGC
1 TTATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAAATAGCAGATCTTGTCTTCCTATATTGGCAGC
* **
32319653 GAAGTAGATCGAAGACCCCAGCC
66 GAAGTAGATCGAAGAACAAAGCC
* * * *
32319676 TTATCTCCCTG-GACAACAGTGGAGTAGGTTGAAAATAACAGATCTTGTATTCCTCTATTGGCAG
1 TTATCTCCCTGAG-CAGCAGTGGAGTAGGTTGAAAATAGCAGATCTTGTCTTCCTATATTGGCAG
*
32319740 CGAAGTAGATCGAAGATAGTAAA-CC
65 CGAAGTAGATCGAAGA-A-CAAAGCC
* * *
32319765 TTATCTCCCTGAACAGCAGTGGAGTAGGTTAAAAATAGCAGATCTTGTCTTTCTATATTGGCAGC
1 TTATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAAATAGCAGATCTTGTCTTCCTATATTGGCAGC
* **
32319830 GAAGTAGATCGAAGACCCCAGCC
66 GAAGTAGATCGAAGAACAAAGCC
* * * ** * ** *
32319853 TTATCTCCCTGAGCGGCAGTAGAGCAGACTGAAAACAGCAGATCTTACCTTCCTGTATTGGCAGC
1 TTATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAAATAGCAGATCTTGTCTTCCTATATTGGCAGC
* * *
32319918 GAAGGAAATCGAAGAACACCAGCC
66 GAAGTAGATCGAAGAACA-AAGCC
**
32319942 TTGCCTCCCTGAG
1 TTATCTCCCTGAG
32319955 TTTGCAGTGG
Statistics
Matches: 313, Mismatches: 48, Indels: 12
0.84 0.13 0.03
Matches are distributed among these distances:
87 2 0.01
88 146 0.47
89 164 0.52
90 1 0.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.25
Consensus pattern (88 bp):
TTATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAAATAGCAGATCTTGTCTTCCTATATTGGCAGC
GAAGTAGATCGAAGAACAAAGCC
Found at i:32319802 original size:177 final size:177
Alignment explanation
Indices: 32319499--32319865 Score: 639
Period size: 177 Copynumber: 2.1 Consensus size: 177
32319489 AGTAGATTGA
* * *
32319499 TTATCTCCCTGAGAAACAGTGGAGTAGGTTGAAAATAACAGATCTTGTCTTCTTGTATTGGCAGC
1 TTATCTCCCTGAGAAACAGTGGAGTAGGTTGAAAATAACAGATCTTGTATTCCTCTATTGGCAGC
* * *
32319564 GAAGTAGATCGAAGATATAAAGCCTTATCTCCCTGAGCAGTAGTGGAGTAGGTTGAAAATAGCAG
66 GAAGTAGATCGAAGATATAAAGCCTTATCTCCCTGAACAGCAGTGGAGTAGGTTAAAAATAGCAG
32319629 ATCTTGTCTTCCTATATTGGCAGCGAAGTAGATCGAAGACCCCAGCC
131 ATCTTGTCTTCCTATATTGGCAGCGAAGTAGATCGAAGACCCCAGCC
32319676 TTATCTCCCTG-GACAACAGTGGAGTAGGTTGAAAATAACAGATCTTGTATTCCTCTATTGGCAG
1 TTATCTCCCTGAGA-AACAGTGGAGTAGGTTGAAAATAACAGATCTTGTATTCCTCTATTGGCAG
32319740 CGAAGTAGATCGAAGATAGTAAA-CCTTATCTCCCTGAACAGCAGTGGAGTAGGTTAAAAATAGC
65 CGAAGTAGATCGAAGATA-TAAAGCCTTATCTCCCTGAACAGCAGTGGAGTAGGTTAAAAATAGC
*
32319804 AGATCTTGTCTTTCTATATTGGCAGCGAAGTAGATCGAAGACCCCAGCC
129 AGATCTTGTCTTCCTATATTGGCAGCGAAGTAGATCGAAGACCCCAGCC
32319853 TTATCTCCCTGAG
1 TTATCTCCCTGAG
32319866 CGGCAGTAGA
Statistics
Matches: 180, Mismatches: 7, Indels: 5
0.94 0.04 0.03
Matches are distributed among these distances:
176 2 0.01
177 173 0.96
178 5 0.03
ACGTcount: A:0.30, C:0.20, G:0.23, T:0.27
Consensus pattern (177 bp):
TTATCTCCCTGAGAAACAGTGGAGTAGGTTGAAAATAACAGATCTTGTATTCCTCTATTGGCAGC
GAAGTAGATCGAAGATATAAAGCCTTATCTCCCTGAACAGCAGTGGAGTAGGTTAAAAATAGCAG
ATCTTGTCTTCCTATATTGGCAGCGAAGTAGATCGAAGACCCCAGCC
Found at i:32319897 original size:177 final size:177
Alignment explanation
Indices: 32319499--32319932 Score: 613
Period size: 177 Copynumber: 2.5 Consensus size: 177
32319489 AGTAGATTGA
* * ** *
32319499 TTATCTCCCTGAGA-AACAGTGGAGTAGGTTGAAAATAACAGATCTTGTCTTCTTGTATTGGCAG
1 TTATCTCCCTG-GACAACAGTAGAGCAGACTGAAAATAACAGATCTTGTCTTCCTGTATTGGCAG
* * *
32319563 CGAAGTAGATCGAAGATATAAAGCCTTATCTCCCTGAGCAGTAGTGGAGTAGGTTGAAAATAGCA
65 CGAAGTAGATCGAAGATATAAAGCCTTATCTCCCTGAACAGCAGTGGAGTAGGTTAAAAATAGCA
32319628 GATCTTGTCTTCCTATATTGGCAGCGAAGTAGATCGAAGACCCCAGCC
130 GATCTTGTCTTCCTATATTGGCAGCGAAGTAGATCGAAGACCCCAGCC
* * ** * *
32319676 TTATCTCCCTGGACAACAGTGGAGTAGGTTGAAAATAACAGATCTTGTATTCCTCTATTGGCAGC
1 TTATCTCCCTGGACAACAGTAGAGCAGACTGAAAATAACAGATCTTGTCTTCCTGTATTGGCAGC
32319741 GAAGTAGATCGAAGATAGTAAA-CCTTATCTCCCTGAACAGCAGTGGAGTAGGTTAAAAATAGCA
66 GAAGTAGATCGAAGATA-TAAAGCCTTATCTCCCTGAACAGCAGTGGAGTAGGTTAAAAATAGCA
*
32319805 GATCTTGTCTTTCTATATTGGCAGCGAAGTAGATCGAAGACCCCAGCC
130 GATCTTGTCTTCCTATATTGGCAGCGAAGTAGATCGAAGACCCCAGCC
** * * **
32319853 TTATCTCCCT-GAGCGGCAGTAGAGCAGACTGAAAACAGCAGATCTTACCTTCCTGTATTGGCAG
1 TTATCTCCCTGGA-CAACAGTAGAGCAGACTGAAAATAACAGATCTTGTCTTCCTGTATTGGCAG
* *
32319917 CGAAGGAAATCGAAGA
65 CGAAGTAGATCGAAGA
32319933 ACACCAGCCT
Statistics
Matches: 233, Mismatches: 21, Indels: 6
0.90 0.08 0.02
Matches are distributed among these distances:
176 4 0.02
177 225 0.97
178 4 0.02
ACGTcount: A:0.31, C:0.20, G:0.24, T:0.26
Consensus pattern (177 bp):
TTATCTCCCTGGACAACAGTAGAGCAGACTGAAAATAACAGATCTTGTCTTCCTGTATTGGCAGC
GAAGTAGATCGAAGATATAAAGCCTTATCTCCCTGAACAGCAGTGGAGTAGGTTAAAAATAGCAG
ATCTTGTCTTCCTATATTGGCAGCGAAGTAGATCGAAGACCCCAGCC
Found at i:32319986 original size:90 final size:90
Alignment explanation
Indices: 32319530--32320055 Score: 289
Period size: 89 Copynumber: 5.9 Consensus size: 90
32319520 GAGTAGGTTG
* ** * * * * **
32319530 AAAATAACAGATCTTGTCTTCTTGTATTGGCAGCGAAGTAGATCGAAGATATA-AAGCCTTATCT
1 AAAACAACAGATCTTACCTTCCTGTATTGGCAGCGAAGCAGATCGAAGA-ACACCAGCCTTGCCT
** * * ** *
32319594 CCCTGAG-CAGTAGTGGAGTAGGTTG
65 CCCTGAGTTTGCAGTGGAGCAGACTA
* * ** * * * **
32319619 AAAATAGCAGATCTTGTCTTCCTATATTGGCAGCGAAGTAGATCGAAG-ACCCCAGCCTTATCTC
1 AAAACAACAGATCTTACCTTCCTGTATTGGCAGCGAAGCAGATCGAAGAACACCAGCCTTGCCTC
**** * ** *
32319683 CCTG-GACAACAGTGGAGTAGGTTG
66 CCTGAGTTTGCAGTGGAGCAGACTA
* *** * * * * **
32319707 AAAATAACAGATCTTGTATTCCTCTATTGGCAGCGAAGTAGATCGAAGATAGTA--AACCTTATC
1 AAAACAACAGATCTTACCTTCCTGTATTGGCAGCGAAGCAGATCGAAGA-A-CACCAGCCTTGCC
*** * **
32319770 TCCCTGA-ACAGCAGTGGAGTAGGTTA
64 TCCCTGAGTTTGCAGTGGAGCAGACTA
* * ** * * * * **
32319796 AAAATAGCAGATCTTGTCTTTCTATATTGGCAGCGAAGTAGATCGAAG-ACCCCAGCCTTATCTC
1 AAAACAACAGATCTTACCTTCCTGTATTGGCAGCGAAGCAGATCGAAGAACACCAGCCTTGCCTC
** * *
32319860 CCTGAG-CGGCAGTAGAGCAGACTG
66 CCTGAGTTTGCAGTGGAGCAGACTA
* * *
32319884 AAAACAGCAGATCTTACCTTCCTGTATTGGCAGCGAAGGAAATCGAAGAACACCAGCCTTGCCTC
1 AAAACAACAGATCTTACCTTCCTGTATTGGCAGCGAAGCAGATCGAAGAACACCAGCCTTGCCTC
32319949 CCTGAGTTTGCAGTGGAGCAGACTA
66 CCTGAGTTTGCAGTGGAGCAGACTA
* * * * * * *
32319974 AAAACAACAGATCTTATCTTTCTGTACTGGCAGCGAAACAGATCG-ACAACACTAGTCTTGCCTC
1 AAAACAACAGATCTTACCTTCCTGTATTGGCAGCGAAGCAGATCGAAGAACACCAGCCTTGCCTC
*
32320038 TCTGAGTTTGCAGTGGAG
66 CCTGAGTTTGCAGTGGAG
32320056 TAGGTTGAAG
Statistics
Matches: 372, Mismatches: 54, Indels: 22
0.83 0.12 0.05
Matches are distributed among these distances:
87 3 0.01
88 144 0.39
89 172 0.46
90 53 0.14
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.25
Consensus pattern (90 bp):
AAAACAACAGATCTTACCTTCCTGTATTGGCAGCGAAGCAGATCGAAGAACACCAGCCTTGCCTC
CCTGAGTTTGCAGTGGAGCAGACTA
Found at i:32320125 original size:44 final size:44
Alignment explanation
Indices: 32320077--32320389 Score: 138
Period size: 44 Copynumber: 7.1 Consensus size: 44
32320067 TTGTAGATCC
32320077 TATCTCCCTAAGCAGTAGTGGAGCAGATTAAAGACGGTGAATCT
1 TATCTCCCTAAGCAGTAGTGGAGCAGATTAAAGACGGTGAATCT
* * **** *
32320121 TATCTTCCC-AAGGTAGTAG-GGAAGCAGATTTAAG-CCACCAATCC
1 TATC-TCCCTAA-GCAGTAGTGG-AGCAGATTAAAGACGGTGAATCT
* * * * ** *
32320165 TATCTCCCTGAA-CAGCAGTGGAGTAGGTTGAAGATTGT-AGATCC
1 TATCTCCCT-AAGCAGTAGTGGAGCAGATTAAAGACGGTGA-ATCT
* * * *
32320209 TGTCTCCCTAAGTAGTAGTGGAGCAGATCAAAGACGATGAATCT
1 TATCTCCCTAAGCAGTAGTGGAGCAGATTAAAGACGGTGAATCT
* * **** *
32320253 TATCTTCCC-AAGGTAGTAG-GGAAGCAGATTTAAG-CCACCAATCC
1 TATC-TCCCTAA-GCAGTAGTGG-AGCAGATTAAAGACGGTGAATCT
* * * * * * ** *
32320297 TATTTCCCTGAGCAGCAGTGGAGTAGGTTGAAGAATGTAAATCT
1 TATCTCCCTAAGCAGTAGTGGAGCAGATTAAAGACGGTGAATCT
*** * * *
32320341 CGGCTCCCTAAGCAGTAGTGGAGTAGATCAAAGACGGTGAATTT
1 TATCTCCCTAAGCAGTAGTGGAGCAGATTAAAGACGGTGAATCT
32320385 TATCT
1 TATCT
32320390 TTCCAAGGTA
Statistics
Matches: 190, Mismatches: 63, Indels: 32
0.67 0.22 0.11
Matches are distributed among these distances:
43 38 0.20
44 107 0.56
45 45 0.24
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (44 bp):
TATCTCCCTAAGCAGTAGTGGAGCAGATTAAAGACGGTGAATCT
Found at i:32320546 original size:132 final size:132
Alignment explanation
Indices: 32320047--32320522 Score: 758
Period size: 132 Copynumber: 3.6 Consensus size: 132
32320037 CTCTGAGTTT
* *
32320047 GCAGTGGAGTAGGTTGAAGATTGTAGATCCTATCTCCCTAAGCAGTAGTGGAGCAGATTAAAGAC
1 GCAGTGGAGTAGGTTGAAGATTGTAGATCCTGTCTCCCTAAGCAGTAGTGGAGCAGATCAAAGAC
*
32320112 GGTGAATCTTATCTTCCCAAGGTAGTAGGGAAGCAGATTTAAGCCACCAATCCTATCTCCCTGAA
66 GGTGAATCTTATCTTCCCAAGGTAGTAGGGAAGCAGATTTAAGCCACCAATCCTATCTCCCTGAG
32320177 CA
131 CA
*
32320179 GCAGTGGAGTAGGTTGAAGATTGTAGATCCTGTCTCCCTAAGTAGTAGTGGAGCAGATCAAAGAC
1 GCAGTGGAGTAGGTTGAAGATTGTAGATCCTGTCTCCCTAAGCAGTAGTGGAGCAGATCAAAGAC
* *
32320244 GATGAATCTTATCTTCCCAAGGTAGTAGGGAAGCAGATTTAAGCCACCAATCCTATTTCCCTGAG
66 GGTGAATCTTATCTTCCCAAGGTAGTAGGGAAGCAGATTTAAGCCACCAATCCTATCTCCCTGAG
32320309 CA
131 CA
* * * *
32320311 GCAGTGGAGTAGGTTGAAGAATGTAAAT-CTCGGCTCCCTAAGCAGTAGTGGAGTAGATCAAAGA
1 GCAGTGGAGTAGGTTGAAGATTGTAGATCCT-GTCTCCCTAAGCAGTAGTGGAGCAGATCAAAGA
* * * *
32320375 CGGTGAATTTTATCTTTCCAAGGTAGTAGGGAAGCAGATTTAAACCACCAATCCTATCTCTCTGA
65 CGGTGAATCTTATCTTCCCAAGGTAGTAGGGAAGCAGATTTAAGCCACCAATCCTATCTCCCTGA
32320440 GCA
130 GCA
* * * *
32320443 GCAGTGGAGTAGGTTGAAGATTGTAGATCATGTCTCGCTAAGCAGTAGTGAAGCAGATCAAAGAT
1 GCAGTGGAGTAGGTTGAAGATTGTAGATCCTGTCTCCCTAAGCAGTAGTGGAGCAGATCAAAGAC
*
32320508 AGTGAATCTTA-CTTC
66 GGTGAATCTTATCTTC
32320523 TCTGACGTTG
Statistics
Matches: 314, Mismatches: 28, Indels: 5
0.90 0.08 0.01
Matches are distributed among these distances:
131 5 0.02
132 308 0.98
133 1 0.00
ACGTcount: A:0.30, C:0.18, G:0.25, T:0.26
Consensus pattern (132 bp):
GCAGTGGAGTAGGTTGAAGATTGTAGATCCTGTCTCCCTAAGCAGTAGTGGAGCAGATCAAAGAC
GGTGAATCTTATCTTCCCAAGGTAGTAGGGAAGCAGATTTAAGCCACCAATCCTATCTCCCTGAG
CA
Found at i:32320563 original size:50 final size:49
Alignment explanation
Indices: 32320508--32320672 Score: 258
Period size: 50 Copynumber: 3.3 Consensus size: 49
32320498 GATCAAAGAT
32320508 AGTGAATCTTACTTCTCTGACGTTGCAGTAAAACAGATTGAAGCTACAAC
1 AGTGAATCTTACTTCTC-GACGTTGCAGTAAAACAGATTGAAGCTACAAC
*
32320558 AGTGAATCTTACTTCTCCGACATTGCAGTAAAACAGATTGAAGCTACAAC
1 AGTGAATCTTACTTCT-CGACGTTGCAGTAAAACAGATTGAAGCTACAAC
* * *
32320608 AGCGAATCTTACTTCTACGACGTTGTAGTAAAATAGATTGAAGCTACAAC
1 AGTGAATCTTACTTCT-CGACGTTGCAGTAAAACAGATTGAAGCTACAAC
*
32320658 AGGGAATCTTACTTC
1 AGTGAATCTTACTTC
32320673 CCCTAAAGTT
Statistics
Matches: 107, Mismatches: 7, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
50 106 0.99
51 1 0.01
ACGTcount: A:0.35, C:0.20, G:0.18, T:0.28
Consensus pattern (49 bp):
AGTGAATCTTACTTCTCGACGTTGCAGTAAAACAGATTGAAGCTACAAC
Found at i:32321170 original size:19 final size:19
Alignment explanation
Indices: 32321146--32321187 Score: 59
Period size: 19 Copynumber: 2.2 Consensus size: 19
32321136 TATTCATAAA
*
32321146 AAAGGGAGG-AAATTAGTGT
1 AAAGGG-GGAAAATCAGTGT
32321165 AAAGGGGGAAAATCAGTGT
1 AAAGGGGGAAAATCAGTGT
32321184 AAAG
1 AAAG
32321188 AGAAAAAAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 2 0.10
19 19 0.90
ACGTcount: A:0.45, C:0.02, G:0.36, T:0.17
Consensus pattern (19 bp):
AAAGGGGGAAAATCAGTGT
Found at i:32321198 original size:20 final size:21
Alignment explanation
Indices: 32321173--32321218 Score: 58
Period size: 20 Copynumber: 2.2 Consensus size: 21
32321163 GTAAAGGGGG
*
32321173 AAAATCAGTGTAAA-GAGAAA
1 AAAATCAGTGCAAAGGAGAAA
*
32321193 AAAATCATTGCAAAGGGAGAAA
1 AAAATCAGTGCAAA-GGAGAAA
32321215 AAAA
1 AAAA
32321219 ATCAAAAAGT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
20 12 0.55
22 10 0.45
ACGTcount: A:0.61, C:0.07, G:0.20, T:0.13
Consensus pattern (21 bp):
AAAATCAGTGCAAAGGAGAAA
Found at i:32322042 original size:24 final size:23
Alignment explanation
Indices: 32322015--32322104 Score: 85
Period size: 23 Copynumber: 3.9 Consensus size: 23
32322005 TTATTGTATA
*
32322015 TTATTATTTTAGATTTATCATGTT
1 TTATTATTTTAAATTTATCA-GTT
* *
32322039 TTATTATTTGT-AATTTATCAATA
1 TTATTATTT-TAAATTTATCAGTT
*
32322062 TTATTATTTTAAATTCATC-GTT
1 TTATTATTTTAAATTTATCAGTT
**
32322084 AACATTATTTTAAATTTATCA
1 -TTATTATTTTAAATTTATCA
32322105 TGTATATTTA
Statistics
Matches: 53, Mismatches: 9, Indels: 8
0.76 0.13 0.11
Matches are distributed among these distances:
22 2 0.04
23 33 0.62
24 17 0.32
25 1 0.02
ACGTcount: A:0.32, C:0.07, G:0.04, T:0.57
Consensus pattern (23 bp):
TTATTATTTTAAATTTATCAGTT
Found at i:32322116 original size:47 final size:46
Alignment explanation
Indices: 32322041--32322165 Score: 116
Period size: 47 Copynumber: 2.7 Consensus size: 46
32322031 ATCATGTTTT
*
32322041 ATTATTTGT-AATTTATCA-ATAT-TATTATTTTAAATTCATCGTTAAC
1 ATTATTT-TAAATTTATCATATATAT-TTATTTTAAATT-ATCATTAAC
* * *
32322087 ATTATTTTAAATTTATCATGTATATTTATTTCAAAATTATCATTAAT
1 ATTATTTTAAATTTATCATATATATTTATTT-TAAATTATCATTAAC
*
32322134 A-T-TTTTAAATTTATTATATAACTATTTATTTT
1 ATTATTTTAAATTTATCATAT-A-TATTTATTTT
32322166 GGATTTATCA
Statistics
Matches: 66, Mismatches: 7, Indels: 12
0.78 0.08 0.14
Matches are distributed among these distances:
45 16 0.24
46 18 0.27
47 26 0.39
48 6 0.09
ACGTcount: A:0.36, C:0.06, G:0.02, T:0.55
Consensus pattern (46 bp):
ATTATTTTAAATTTATCATATATATTTATTTTAAATTATCATTAAC
Found at i:32322126 original size:24 final size:24
Alignment explanation
Indices: 32322088--32322137 Score: 66
Period size: 24 Copynumber: 2.1 Consensus size: 24
32322078 ATCGTTAACA
* *
32322088 TTATTTTAAATTTATCATGT-ATAT
1 TTATTTCAAAATTATCAT-TAATAT
32322112 TTATTTCAAAATTATCATTAATAT
1 TTATTTCAAAATTATCATTAATAT
32322136 TT
1 TT
32322138 TTAAATTTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
23 1 0.04
24 22 0.96
ACGTcount: A:0.36, C:0.06, G:0.02, T:0.56
Consensus pattern (24 bp):
TTATTTCAAAATTATCATTAATAT
Found at i:32322235 original size:24 final size:26
Alignment explanation
Indices: 32322208--32322265 Score: 77
Period size: 24 Copynumber: 2.3 Consensus size: 26
32322198 CATCAGAAAT
*
32322208 TTTTAAATTTTA-TATGTATTA-TTA
1 TTTTAAATTTTATTATATATTATTTA
32322232 TTTTAAA-TTTATTATATATTATTTA
1 TTTTAAATTTTATTATATATTATTTA
*
32322257 TTGTAAATT
1 TTTTAAATT
32322266 ATCCAATTCA
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
23 4 0.14
24 15 0.52
25 9 0.31
26 1 0.03
ACGTcount: A:0.34, C:0.00, G:0.03, T:0.62
Consensus pattern (26 bp):
TTTTAAATTTTATTATATATTATTTA
Found at i:32322236 original size:17 final size:18
Alignment explanation
Indices: 32322214--32322251 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 18
32322204 AAATTTTTAA
*
32322214 ATTTTATATGTATTAT-T
1 ATTTTAAATGTATTATAT
*
32322231 ATTTTAAATTTATTATAT
1 ATTTTAAATGTATTATAT
32322249 ATT
1 ATT
32322252 ATTTATTGTA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
17 14 0.78
18 4 0.22
ACGTcount: A:0.34, C:0.00, G:0.03, T:0.63
Consensus pattern (18 bp):
ATTTTAAATGTATTATAT
Found at i:32322310 original size:16 final size:16
Alignment explanation
Indices: 32322289--32322320 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
32322279 CAAATTGTAC
32322289 ATATTATTTGTATTAA
1 ATATTATTTGTATTAA
*
32322305 ATATTATTTGTTTTAA
1 ATATTATTTGTATTAA
32322321 TTCATGTATT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.34, C:0.00, G:0.06, T:0.59
Consensus pattern (16 bp):
ATATTATTTGTATTAA
Found at i:32322399 original size:11 final size:11
Alignment explanation
Indices: 32322383--32322411 Score: 51
Period size: 10 Copynumber: 2.7 Consensus size: 11
32322373 TACATATTAC
32322383 TTATTTTTTAA
1 TTATTTTTTAA
32322394 TTA-TTTTTAA
1 TTATTTTTTAA
32322404 TTATTTTT
1 TTATTTTT
32322412 CTATATAATG
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
10 10 0.59
11 7 0.41
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (11 bp):
TTATTTTTTAA
Found at i:32325019 original size:23 final size:23
Alignment explanation
Indices: 32324993--32325039 Score: 76
Period size: 23 Copynumber: 2.0 Consensus size: 23
32324983 CAGCATCATA
32324993 TTTCATTACAAAAACCAATCAAT
1 TTTCATTACAAAAACCAATCAAT
* *
32325016 TTTCATTACAAAGACCAGTCAAT
1 TTTCATTACAAAAACCAATCAAT
32325039 T
1 T
32325040 CATACAAAAC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.43, C:0.21, G:0.04, T:0.32
Consensus pattern (23 bp):
TTTCATTACAAAAACCAATCAAT
Found at i:32326251 original size:36 final size:36
Alignment explanation
Indices: 32326204--32326311 Score: 157
Period size: 36 Copynumber: 3.0 Consensus size: 36
32326194 TGTCAGTGTC
*
32326204 TGATTACTACACCAAGATATCTCGTGCAAGTTTATA
1 TGATTACTACACCAAGATATCTCGTACAAGTTTATA
32326240 TGATTACTACACCAAGATATCTCGTACAAGTTTATA
1 TGATTACTACACCAAGATATCTCGTACAAGTTTATA
** *
32326276 T--TTTGTCACACCAAGATATCTCATACAAGTTTATA
1 TGATTACT-ACACCAAGATATCTCGTACAAGTTTATA
32326311 T
1 T
32326312 TTTATCTAAA
Statistics
Matches: 67, Mismatches: 4, Indels: 3
0.91 0.05 0.04
Matches are distributed among these distances:
34 3 0.04
35 28 0.42
36 36 0.54
ACGTcount: A:0.34, C:0.19, G:0.11, T:0.35
Consensus pattern (36 bp):
TGATTACTACACCAAGATATCTCGTACAAGTTTATA
Found at i:32326294 original size:35 final size:35
Alignment explanation
Indices: 32326207--32326315 Score: 157
Period size: 35 Copynumber: 3.1 Consensus size: 35
32326197 CAGTGTCTGA
* *
32326207 TTACTACACCAAGATATCTCGTGCAAGTTTATATGA
1 TTACTACACCAAGATATCTCGTACAAGTTTATAT-T
32326243 TTACTACACCAAGATATCTCGTACAAGTTTATATT
1 TTACTACACCAAGATATCTCGTACAAGTTTATATT
* *
32326278 TT-GTCACACCAAGATATCTCATACAAGTTTATATT
1 TTACT-ACACCAAGATATCTCGTACAAGTTTATATT
32326313 TTA
1 TTA
32326316 TCTAAACATG
Statistics
Matches: 67, Mismatches: 4, Indels: 4
0.89 0.05 0.05
Matches are distributed among these distances:
34 1 0.01
35 33 0.49
36 33 0.49
ACGTcount: A:0.34, C:0.19, G:0.10, T:0.37
Consensus pattern (35 bp):
TTACTACACCAAGATATCTCGTACAAGTTTATATT
Found at i:32338841 original size:32 final size:32
Alignment explanation
Indices: 32338786--32338895 Score: 134
Period size: 32 Copynumber: 3.5 Consensus size: 32
32338776 GAATGGCTAC
* *
32338786 AAGCCATAAGTA-CAGTAATATGATTGGCACA
1 AAGCCATCAGTAGCAGTAATATGATCGGCACA
* *
32338817 AAGCCATTAGTAGCAGTGATATGATCGGCACA
1 AAGCCATCAGTAGCAGTAATATGATCGGCACA
* * *
32338849 CAA-CCATCAGTAACGGTAATATGATCGGGACA
1 -AAGCCATCAGTAGCAGTAATATGATCGGCACA
32338881 AAGCCATCAGTAGCA
1 AAGCCATCAGTAGCA
32338896 TCACAGCAAA
Statistics
Matches: 66, Mismatches: 10, Indels: 5
0.81 0.12 0.06
Matches are distributed among these distances:
31 13 0.20
32 51 0.77
33 2 0.03
ACGTcount: A:0.38, C:0.20, G:0.22, T:0.20
Consensus pattern (32 bp):
AAGCCATCAGTAGCAGTAATATGATCGGCACA
Found at i:32338973 original size:26 final size:27
Alignment explanation
Indices: 32338915--32338967 Score: 74
Period size: 27 Copynumber: 2.0 Consensus size: 27
32338905 AGTTTCCAAT
32338915 AACAGTATATGTGGCCAAACCACCAGA
1 AACAGTATATGTGGCCAAACCACCAGA
32338942 AACAGTGAT-TGTGG-CAAAGCCACCAG
1 AACAGT-ATATGTGGCCAAA-CCACCAG
32338968 TACAGTACTT
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
26 4 0.17
27 18 0.75
28 2 0.08
ACGTcount: A:0.38, C:0.25, G:0.23, T:0.15
Consensus pattern (27 bp):
AACAGTATATGTGGCCAAACCACCAGA
Found at i:32339150 original size:27 final size:27
Alignment explanation
Indices: 32339120--32339294 Score: 219
Period size: 27 Copynumber: 6.6 Consensus size: 27
32339110 GGTATATTGA
* *
32339120 TCATTTTACCCTACAAGGGTATTACGG
1 TCATTTTACCCTACAGGGGCATTACGG
* *
32339147 TCATTTTACTCTATAGGGGCATTACGG
1 TCATTTTACCCTACAGGGGCATTACGG
*
32339174 TCATTTTACTCTACAGGGG-ATTACGG
1 TCATTTTACCCTACAGGGGCATTACGG
* * * *
32339200 TCATTTTATCCTA-AGGGGTATTATGA
1 TCATTTTACCCTACAGGGGCATTACGG
* *
32339226 TCATTTTACCTTACAGGGGCATTACAG
1 TCATTTTACCCTACAGGGGCATTACGG
32339253 TCATTTTACCCTACAGGGGCATTACGG
1 TCATTTTACCCTACAGGGGCATTACGG
* *
32339280 TTATTTTAACCTACA
1 TCATTTTACCCTACA
32339295 TAGGCTGTAA
Statistics
Matches: 127, Mismatches: 19, Indels: 4
0.85 0.13 0.03
Matches are distributed among these distances:
25 5 0.04
26 34 0.27
27 88 0.69
ACGTcount: A:0.25, C:0.20, G:0.19, T:0.36
Consensus pattern (27 bp):
TCATTTTACCCTACAGGGGCATTACGG
Found at i:32339155 original size:53 final size:52
Alignment explanation
Indices: 32339093--32339262 Score: 182
Period size: 53 Copynumber: 3.2 Consensus size: 52
32339083 GGGCAAAATA
* *
32339093 GTCATTTTACCTTTGGAGGTA-TATTGATCATTTTACCCTACAAGGGTATTACG
1 GTCATTTTACCTTAGG-GGTATTA-TGATCATTTTACCCTACAAGGGCATTACG
* * * * *
32339146 GTCATTTTACTCTATAGGGGCATTACGGTCATTTTACTCTAC-AGGGGATTACG
1 GTCATTTTAC-CT-TAGGGGTATTATGATCATTTTACCCTACAAGGGCATTACG
* * * *
32339199 GTCATTTTATCCTAAGGGGTATTATGATCATTTTACCTTACAGGGGCATTACA
1 GTCATTTTA-CCTTAGGGGTATTATGATCATTTTACCCTACAAGGGCATTACG
32339252 GTCATTTTACC
1 GTCATTTTACC
32339263 CTACAGGGGC
Statistics
Matches: 97, Mismatches: 15, Indels: 11
0.79 0.12 0.09
Matches are distributed among these distances:
52 24 0.25
53 48 0.49
54 20 0.21
55 5 0.05
ACGTcount: A:0.24, C:0.18, G:0.19, T:0.38
Consensus pattern (52 bp):
GTCATTTTACCTTAGGGGTATTATGATCATTTTACCCTACAAGGGCATTACG
Found at i:32339247 original size:79 final size:81
Alignment explanation
Indices: 32339120--32339294 Score: 239
Period size: 79 Copynumber: 2.2 Consensus size: 81
32339110 GGTATATTGA
* * * * *
32339120 TCATTTTACCCTACAAGGGTATTACGGTCATTTTACTCTATAGGGGCATTACGGTCATTTTACTC
1 TCATTTTAACCTACAAGGGTATTACGATCATTTTACTCTACAGGGGCATTACAGTCATTTTACCC
32339185 TACAGGGG-ATTACGG
66 TACAGGGGCATTACGG
* * *
32339200 TCATTTTATCCTA-AGGGGTATTATGATCATTTTAC-CTTACAGGGGCATTACAGTCATTTTACC
1 TCATTTTAACCTACAAGGGTATTACGATCATTTTACTC-TACAGGGGCATTACAGTCATTTTACC
32339263 CTACAGGGGCATTACGG
65 CTACAGGGGCATTACGG
*
32339280 TTATTTTAACCTACA
1 TCATTTTAACCTACA
32339295 TAGGCTGTAA
Statistics
Matches: 83, Mismatches: 9, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
78 1 0.01
79 51 0.61
80 30 0.36
81 1 0.01
ACGTcount: A:0.25, C:0.20, G:0.19, T:0.36
Consensus pattern (81 bp):
TCATTTTAACCTACAAGGGTATTACGATCATTTTACTCTACAGGGGCATTACAGTCATTTTACCC
TACAGGGGCATTACGG
Found at i:32341233 original size:18 final size:17
Alignment explanation
Indices: 32341200--32341238 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 17
32341190 TTTTATAAAT
32341200 TGTGAATTATATTTGATA
1 TGTGAATTATATTTGA-A
32341218 TGTGAATTA-ATATTGAA
1 TGTGAATTATAT-TTGAA
32341235 TGTG
1 TGTG
32341239 GAAGGAAAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
17 7 0.35
18 13 0.65
ACGTcount: A:0.33, C:0.00, G:0.21, T:0.46
Consensus pattern (17 bp):
TGTGAATTATATTTGAA
Found at i:32341483 original size:23 final size:23
Alignment explanation
Indices: 32341456--32341577 Score: 163
Period size: 23 Copynumber: 5.3 Consensus size: 23
32341446 AGTGTTATTG
32341456 ATCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
* * *
32341479 TTCAGTGGTAGCTACCGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
32341502 ATCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
* * * * *
32341525 TTTAATGGTAGCTACGGCTACGT
1 ATCAGTGGTAGCTTCGGCTACAT
*
32341548 ATCAGTCGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
32341571 ATCAGTG
1 ATCAGTG
32341578 TGGCACTTAT
Statistics
Matches: 81, Mismatches: 18, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
23 81 1.00
ACGTcount: A:0.22, C:0.22, G:0.25, T:0.31
Consensus pattern (23 bp):
ATCAGTGGTAGCTTCGGCTACAT
Found at i:32341509 original size:46 final size:46
Alignment explanation
Indices: 32341456--32341577 Score: 190
Period size: 46 Copynumber: 2.7 Consensus size: 46
32341446 AGTGTTATTG
32341456 ATCAGTGGTAGCTTCGGCTACATTTCAGTGGTAGCTACCGCTACAT
1 ATCAGTGGTAGCTTCGGCTACATTTCAGTGGTAGCTACCGCTACAT
* * * *
32341502 ATCAGTGGTAGCTTCGGCTACATTTTAATGGTAGCTACGGCTACGT
1 ATCAGTGGTAGCTTCGGCTACATTTCAGTGGTAGCTACCGCTACAT
* *
32341548 ATCAGTCGTAGCTTCGGCTACATATCAGTG
1 ATCAGTGGTAGCTTCGGCTACATTTCAGTG
32341578 TGGCACTTAT
Statistics
Matches: 68, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
46 68 1.00
ACGTcount: A:0.22, C:0.22, G:0.25, T:0.31
Consensus pattern (46 bp):
ATCAGTGGTAGCTTCGGCTACATTTCAGTGGTAGCTACCGCTACAT
Found at i:32342036 original size:27 final size:27
Alignment explanation
Indices: 32341995--32342131 Score: 184
Period size: 27 Copynumber: 5.1 Consensus size: 27
32341985 GGTGTTACAC
* *
32341995 GGGCATTACGGTCATTTTATCCTATAG
1 GGGCATTACGATCATTTTACCCTATAG
32342022 GGGCATTACGATCATTTTACCCTATAG
1 GGGCATTACGATCATTTTACCCTATAG
* * *
32342049 GGTCATTACGGTTATTTTACCCTATAG
1 GGGCATTACGATCATTTTACCCTATAG
* * *
32342076 GGGTATTACGATCATTTTACCCTACAA
1 GGGCATTACGATCATTTTACCCTATAG
* *
32342103 GGGCATTACGATCAGTTTATCCTATAG
1 GGGCATTACGATCATTTTACCCTATAG
32342130 GG
1 GG
32342132 TGTTAGAGTA
Statistics
Matches: 94, Mismatches: 16, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 94 1.00
ACGTcount: A:0.25, C:0.20, G:0.20, T:0.35
Consensus pattern (27 bp):
GGGCATTACGATCATTTTACCCTATAG
Found at i:32342066 original size:54 final size:54
Alignment explanation
Indices: 32341990--32342131 Score: 205
Period size: 54 Copynumber: 2.6 Consensus size: 54
32341980 TAAGGGGTGT
*
32341990 TACACGGGCATTACGGTCATTTTATCCTATAGGGGCATTACGATCATTTTACCC
1 TACAAGGGCATTACGGTCATTTTATCCTATAGGGGCATTACGATCATTTTACCC
* * * *
32342044 TA-TAGGGTCATTACGGTTATTTTACCCTATAGGGGTATTACGATCATTTTACCC
1 TACAAGGG-CATTACGGTCATTTTATCCTATAGGGGCATTACGATCATTTTACCC
* *
32342098 TACAAGGGCATTACGATCAGTTTATCCTATAGGG
1 TACAAGGGCATTACGGTCATTTTATCCTATAGGG
32342132 TGTTAGAGTA
Statistics
Matches: 76, Mismatches: 10, Indels: 4
0.84 0.11 0.04
Matches are distributed among these distances:
53 3 0.04
54 69 0.91
55 4 0.05
ACGTcount: A:0.25, C:0.20, G:0.20, T:0.35
Consensus pattern (54 bp):
TACAAGGGCATTACGGTCATTTTATCCTATAGGGGCATTACGATCATTTTACCC
Found at i:32343679 original size:27 final size:27
Alignment explanation
Indices: 32343636--32343708 Score: 101
Period size: 27 Copynumber: 2.7 Consensus size: 27
32343626 GATCCAACAT
* * *
32343636 AGGGGCATTACGATCATTTTACCCTAC
1 AGGGGCATTACGGTCATTTTACCATAA
*
32343663 AGGGGCATTATGGTCATTTTACCATAA
1 AGGGGCATTACGGTCATTTTACCATAA
*
32343690 AAGGGCATTACGGTCATTT
1 AGGGGCATTACGGTCATTT
32343709 AACAACCTTT
Statistics
Matches: 40, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 40 1.00
ACGTcount: A:0.27, C:0.19, G:0.22, T:0.32
Consensus pattern (27 bp):
AGGGGCATTACGGTCATTTTACCATAA
Found at i:32346870 original size:44 final size:41
Alignment explanation
Indices: 32346806--32346962 Score: 158
Period size: 44 Copynumber: 3.7 Consensus size: 41
32346796 TAACCGTTAC
32346806 ACGGTGGAATCAGCACTTAGCAACCACCTCATGTTCAAAGGAT
1 ACGGTGGAATCAGCACTTAGCAACCACCT-ATG-TCAAAGGAT
* * *
32346849 CCCGGTGGAATCAGCACTTAGCAACCACCTTATAATC-AATGAT
1 -ACGGTGGAATCAGCACTTAGCAACCACC-TAT-GTCAAAGGAT
* * *
32346892 ACGG-GGAATCAGCACATAGCAACC-CCTTTGACAATCAAGGAT
1 ACGGTGGAATCAGCACTTAGCAACCACCTATGTC-A--AAGGAT
*
32346934 ACGGTGGAACCAGCACTTAGCAACCACCT
1 ACGGTGGAATCAGCACTTAGCAACCACCT
32346963 TTATAATCAA
Statistics
Matches: 94, Mismatches: 11, Indels: 16
0.78 0.09 0.13
Matches are distributed among these distances:
38 1 0.01
39 2 0.02
40 2 0.02
41 19 0.20
42 12 0.13
43 23 0.24
44 34 0.36
45 1 0.01
ACGTcount: A:0.33, C:0.28, G:0.20, T:0.19
Consensus pattern (41 bp):
ACGGTGGAATCAGCACTTAGCAACCACCTATGTCAAAGGAT
Found at i:32347014 original size:42 final size:41
Alignment explanation
Indices: 32346855--32347046 Score: 206
Period size: 42 Copynumber: 4.6 Consensus size: 41
32346845 GGATCCCGGT
* *
32346855 GGAATCAGCACTTAGCAACCACC-TTATAATCAATGATACGG
1 GGAATCTGCACTTAGCAACC-CCTTTATAATCAATGATTCGG
* * * * *
32346896 GGAATCAGCACATAGCAACCCCTTTGACAATCAAGGATACGG
1 GGAATCTGCACTTAGCAACCCCTTT-ATAATCAATGATTCGG
* * *
32346938 TGGAACCAGCACTTAGCAACCACCTTTATAATCAATGATTTGG
1 -GGAATCTGCACTTAGCAACC-CCTTTATAATCAATGATTCGG
* * *
32346981 GGAATCTGCACTTAGCAACCCTTTTTTTTATCAATGATTCGG
1 GGAATCTGCACTTAGCAACCC-CTTTATAATCAATGATTCGG
*
32347023 GGAATCTCCACTTAGCAACCCCTT
1 GGAATCTGCACTTAGCAACCCCTT
32347047 ACATTCAAAG
Statistics
Matches: 129, Mismatches: 17, Indels: 10
0.83 0.11 0.06
Matches are distributed among these distances:
40 2 0.02
41 24 0.19
42 68 0.53
43 30 0.23
44 5 0.04
ACGTcount: A:0.31, C:0.26, G:0.17, T:0.26
Consensus pattern (41 bp):
GGAATCTGCACTTAGCAACCCCTTTATAATCAATGATTCGG
Found at i:32350220 original size:95 final size:95
Alignment explanation
Indices: 32350055--32350241 Score: 295
Period size: 95 Copynumber: 2.0 Consensus size: 95
32350045 TAAGGTTATA
* *
32350055 TTTCTCACTGGTGACATTGAAGAGACGGTTTATATGGTGCAACCAAAAATGTAACACCCCTAACC
1 TTTCTCAATGGTAACATTGAAGAGACGGTTTATATGGTGCAACCAAAAATGTAACACCCCTAACC
32350120 CGTATCCGTCACCGGAATAGGGTTACAAAG
66 CGTATCCGTCACCGGAATAGGGTTACAAAG
* * *
32350150 TTTCTCAATGGTAACATTGACA-AGACGGTTTATATGGTGGAACTAGAAATGTAACACCCCTAAC
1 TTTCTCAATGGTAACATTGA-AGAGACGGTTTATATGGTGCAACCAAAAATGTAACACCCCTAAC
* *
32350214 CTGTATCCGTCGCCGGAATAGGGTTACA
65 CCGTATCCGTCACCGGAATAGGGTTACA
32350242 GAGCATTACC
Statistics
Matches: 84, Mismatches: 7, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
95 83 0.99
96 1 0.01
ACGTcount: A:0.31, C:0.22, G:0.21, T:0.26
Consensus pattern (95 bp):
TTTCTCAATGGTAACATTGAAGAGACGGTTTATATGGTGCAACCAAAAATGTAACACCCCTAACC
CGTATCCGTCACCGGAATAGGGTTACAAAG
Found at i:32351585 original size:31 final size:31
Alignment explanation
Indices: 32351548--32351624 Score: 113
Period size: 29 Copynumber: 2.5 Consensus size: 31
32351538 AACCAAAGCT
*
32351548 ATCCCTTTTCATAATTTTGATGGTCGTTACC
1 ATCCCTTTTCATAATTTTGATGGTCGTCACC
*
32351579 ATCCCTTTTCAT--TGTTGATGGTCGTCACC
1 ATCCCTTTTCATAATTTTGATGGTCGTCACC
*
32351608 ATCCCTTTACATAATTT
1 ATCCCTTTTCATAATTT
32351625 GATAGCCGGA
Statistics
Matches: 40, Mismatches: 4, Indels: 4
0.83 0.08 0.08
Matches are distributed among these distances:
29 26 0.65
31 14 0.35
ACGTcount: A:0.19, C:0.25, G:0.12, T:0.44
Consensus pattern (31 bp):
ATCCCTTTTCATAATTTTGATGGTCGTCACC
Found at i:32361938 original size:29 final size:29
Alignment explanation
Indices: 32361879--32361950 Score: 92
Period size: 29 Copynumber: 2.4 Consensus size: 29
32361869 ATAGCCGAAG
*
32361879 CCATACCTTTTCATAGTTCAATGGTCGTCA
1 CCAT-CCTTTTCATAGATCAATGGTCGTCA
* *
32361909 CCATCCCTTTTCATA-ATCGATGGTTGTCA
1 CCAT-CCTTTTCATAGATCAATGGTCGTCA
32361938 CCATCCTTTTCAT
1 CCATCCTTTTCAT
32361951 TTGTTGATGA
Statistics
Matches: 38, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
28 9 0.24
29 15 0.39
30 14 0.37
ACGTcount: A:0.21, C:0.29, G:0.11, T:0.39
Consensus pattern (29 bp):
CCATCCTTTTCATAGATCAATGGTCGTCA
Found at i:32361959 original size:29 final size:29
Alignment explanation
Indices: 32361783--32361950 Score: 97
Period size: 30 Copynumber: 5.7 Consensus size: 29
32361773 TTTTTTTATA
** *
32361783 GTCGTCACCATCCCTTTTCATTGTTGATG
1 GTCGTCACCATCCCTTTTCATAATCGATG
* * * * *
32361812 GTCGTCACAATCCCCTTACATAATTTGATA
1 GTCGTCACCATCCCTTTTCATAA-TCGATG
* ** * * * *
32361842 GCCGAAACTATCCCCTTTCATGATTCGATA
1 GTCGTCACCATCCCTTTTCAT-AATCGATG
* * * * *
32361872 GCCG-AAGCCATACCTTTTCATAGTTCAATG
1 GTCGTCA-CCATCCCTTTTCATA-ATCGATG
32361902 GTCGTCACCATCCCTTTTCATAATCGATG
1 GTCGTCACCATCCCTTTTCATAATCGATG
*
32361931 GTTGTCACCAT-CCTTTTCAT
1 GTCGTCACCATCCCTTTTCAT
32361951 TTGTTGATGA
Statistics
Matches: 110, Mismatches: 24, Indels: 11
0.76 0.17 0.08
Matches are distributed among these distances:
28 9 0.08
29 36 0.33
30 63 0.57
31 2 0.02
ACGTcount: A:0.23, C:0.29, G:0.14, T:0.35
Consensus pattern (29 bp):
GTCGTCACCATCCCTTTTCATAATCGATG
Found at i:32373230 original size:48 final size:48
Alignment explanation
Indices: 32373172--32373263 Score: 175
Period size: 48 Copynumber: 1.9 Consensus size: 48
32373162 TGATGAATTT
32373172 GAAATGTTGGTTGATATTTAAAAGTATTTTGTTAAGTAATTTTGTTAA
1 GAAATGTTGGTTGATATTTAAAAGTATTTTGTTAAGTAATTTTGTTAA
*
32373220 GAAATTTTGGTTGATATTTAAAAGTATTTTGTTAAGTAATTTTG
1 GAAATGTTGGTTGATATTTAAAAGTATTTTGTTAAGTAATTTTG
32373264 ATGAATTTAT
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
48 43 1.00
ACGTcount: A:0.33, C:0.00, G:0.18, T:0.49
Consensus pattern (48 bp):
GAAATGTTGGTTGATATTTAAAAGTATTTTGTTAAGTAATTTTGTTAA
Found at i:32373263 original size:13 final size:13
Alignment explanation
Indices: 32373193--32373228 Score: 56
Period size: 13 Copynumber: 2.8 Consensus size: 13
32373183 TGATATTTAA
32373193 AAGT-ATTTTGTT
1 AAGTAATTTTGTT
32373205 AAGTAATTTTGTT
1 AAGTAATTTTGTT
*
32373218 AAGAAATTTTG
1 AAGTAATTTTG
32373229 GTTGATATTT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
12 4 0.18
13 18 0.82
ACGTcount: A:0.33, C:0.00, G:0.17, T:0.50
Consensus pattern (13 bp):
AAGTAATTTTGTT
Found at i:32375812 original size:50 final size:50
Alignment explanation
Indices: 32375733--32375857 Score: 151
Period size: 50 Copynumber: 2.5 Consensus size: 50
32375723 TATCCCAGAT
* ** * * *
32375733 ATGGTCTTACATGGGAGTTCTCATATCGGTGCCCATGCCATGTCCCAAAC
1 ATGGTCTTACAGGGGACCTATCATATCGGTGCCAACGCCATGTCCCAAAC
* * *
32375783 ATGGTCTTACGGGGGACCTATCATCTCGGTGCCAACGCCATGTCCCAGAC
1 ATGGTCTTACAGGGGACCTATCATATCGGTGCCAACGCCATGTCCCAAAC
* *
32375833 ATGGTCTTACATGGGACCTCTCATA
1 ATGGTCTTACAGGGGACCTATCATA
32375858 ATCTCAATAA
Statistics
Matches: 62, Mismatches: 13, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
50 62 1.00
ACGTcount: A:0.22, C:0.29, G:0.23, T:0.26
Consensus pattern (50 bp):
ATGGTCTTACAGGGGACCTATCATATCGGTGCCAACGCCATGTCCCAAAC
Found at i:32380731 original size:32 final size:32
Alignment explanation
Indices: 32380695--32380762 Score: 77
Period size: 32 Copynumber: 2.1 Consensus size: 32
32380685 TATATATTAA
32380695 TAAATGAAA-A-AATATATAAAATTATTAAATAT
1 TAAATGAAAGATAATATA-AAAATTATTAAA-AT
* * *
32380727 TAAATTAAAGATAATATAAATATTTTTAAAAT
1 TAAATGAAAGATAATATAAAAATTATTAAAAT
32380759 TAAA
1 TAAA
32380763 AAAAATAATA
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
32 14 0.45
33 11 0.35
34 6 0.19
ACGTcount: A:0.60, C:0.00, G:0.03, T:0.37
Consensus pattern (32 bp):
TAAATGAAAGATAATATAAAAATTATTAAAAT
Found at i:32383456 original size:66 final size:66
Alignment explanation
Indices: 32383379--32383561 Score: 215
Period size: 66 Copynumber: 2.8 Consensus size: 66
32383369 GTTAGTAGCC
*
32383379 TCACACGGCCTAGCACATGGGCGTGTGGCTTGGCCATGTGACACAAGTCAGTATACCCATCATTT
1 TCACACGGCCTAGCACACGGGCGTGTGGCTTGGCCATGTGACACAAGTCAGTATACCCATCATTT
32383444 T
66 T
* * * * * * *
32383445 TCACACGGCCTAGCACACGGGCGTGTAGCTTAGCCGTATGTCACAAGTCAGTATGCCCTTCATTT
1 TCACACGGCCTAGCACACGGGCGTGTGGCTTGGCCATGTGACACAAGTCAGTATACCCATCATTT
32383510 T
66 T
** * * * * * *
32383511 TCACACAACCTGGTATACGGTCGTGTGGCTTGGTCATGTGACCCAAG-CAGT
1 TCACACGGCCTAGCACACGGGCGTGTGGCTTGGCCATGTGACACAAGTCAGT
32383562 GAGTTATACG
Statistics
Matches: 96, Mismatches: 21, Indels: 1
0.81 0.18 0.01
Matches are distributed among these distances:
65 4 0.04
66 92 0.96
ACGTcount: A:0.22, C:0.27, G:0.25, T:0.26
Consensus pattern (66 bp):
TCACACGGCCTAGCACACGGGCGTGTGGCTTGGCCATGTGACACAAGTCAGTATACCCATCATTT
T
Found at i:32386906 original size:2 final size:2
Alignment explanation
Indices: 32386899--32386939 Score: 82
Period size: 2 Copynumber: 20.5 Consensus size: 2
32386889 ATTGTTTCGT
32386899 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
32386940 TTTGCCTCTA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 39 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:32388011 original size:29 final size:29
Alignment explanation
Indices: 32387978--32388035 Score: 116
Period size: 29 Copynumber: 2.0 Consensus size: 29
32387968 AATAAGACCA
32387978 AACGATGAAATAAACTAAGCCTGGCCAGT
1 AACGATGAAATAAACTAAGCCTGGCCAGT
32388007 AACGATGAAATAAACTAAGCCTGGCCAGT
1 AACGATGAAATAAACTAAGCCTGGCCAGT
32388036 TATGTACCTG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.41, C:0.21, G:0.21, T:0.17
Consensus pattern (29 bp):
AACGATGAAATAAACTAAGCCTGGCCAGT
Found at i:32391520 original size:15 final size:16
Alignment explanation
Indices: 32391490--32391523 Score: 52
Period size: 15 Copynumber: 2.2 Consensus size: 16
32391480 AAAGTAAAAT
32391490 TTTATCATTTTAATAA
1 TTTATCATTTTAATAA
*
32391506 TTTAT-ATTTTTATAA
1 TTTATCATTTTAATAA
32391521 TTT
1 TTT
32391524 TTAAAGAATT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 12 0.71
16 5 0.29
ACGTcount: A:0.32, C:0.03, G:0.00, T:0.65
Consensus pattern (16 bp):
TTTATCATTTTAATAA
Found at i:32392730 original size:2 final size:2
Alignment explanation
Indices: 32392710--32392754 Score: 65
Period size: 2 Copynumber: 22.0 Consensus size: 2
32392700 TTACTCTAAT
32392710 TA TA -A TA TA GTA CTA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA -TA -TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
32392753 TA
1 TA
32392755 ACCATTGAGT
Statistics
Matches: 40, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
1 1 0.03
2 35 0.88
3 4 0.10
ACGTcount: A:0.49, C:0.02, G:0.02, T:0.47
Consensus pattern (2 bp):
TA
Found at i:32393491 original size:116 final size:116
Alignment explanation
Indices: 32393287--32393501 Score: 412
Period size: 116 Copynumber: 1.9 Consensus size: 116
32393277 CTCACAAAAG
*
32393287 CAAGACTACATGCATAAGCAAGACTAAAAAATGTACTACAAGAGTAGACAAAAACTTCTAAAAGT
1 CAAGACTACATGCATAAGCAAGACTAAAAAACGTACTACAAGAGTAGACAAAAACTTCTAAAAGT
32393352 GAAGACTTATTAAATAATGAAAAAACAAAAAAAAACATATAAAACGTACTA
66 GAAGACTTATTAAATAATGAAAAAACAAAAAAAAACATATAAAACGTACTA
32393403 CAAGACTACATGCATAAGCAAGACTAAAAAACGTACTACAAGAGTAGACAAAAACTTCTAAAAGT
1 CAAGACTACATGCATAAGCAAGACTAAAAAACGTACTACAAGAGTAGACAAAAACTTCTAAAAGT
*
32393468 GAAGGCTTATTAAATAATGAAAAAACAAAAAAAA
66 GAAGACTTATTAAATAATGAAAAAACAAAAAAAA
32393502 TATAAAACTT
Statistics
Matches: 97, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
116 97 1.00
ACGTcount: A:0.56, C:0.14, G:0.12, T:0.18
Consensus pattern (116 bp):
CAAGACTACATGCATAAGCAAGACTAAAAAACGTACTACAAGAGTAGACAAAAACTTCTAAAAGT
GAAGACTTATTAAATAATGAAAAAACAAAAAAAAACATATAAAACGTACTA
Found at i:32397039 original size:16 final size:16
Alignment explanation
Indices: 32397005--32397055 Score: 66
Period size: 16 Copynumber: 3.2 Consensus size: 16
32396995 AGTTGGGGAG
* *
32397005 AATGGAATAGGGCTAT
1 AATGGAATAGAGCTGT
*
32397021 AATGGAATAAAGCTGT
1 AATGGAATAGAGCTGT
*
32397037 AATAGAATAGAGCTGT
1 AATGGAATAGAGCTGT
32397053 AAT
1 AAT
32397056 TAGTAATTCA
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
16 30 1.00
ACGTcount: A:0.43, C:0.06, G:0.25, T:0.25
Consensus pattern (16 bp):
AATGGAATAGAGCTGT
Found at i:32397323 original size:38 final size:39
Alignment explanation
Indices: 32397232--32397344 Score: 131
Period size: 41 Copynumber: 2.8 Consensus size: 39
32397222 TTATTAAATT
* *
32397232 TTAATAAGATTATTATTAAATATAATTAATTTAATCATATT
1 TTAATATGATTATTATTAAATATAATTAA--TAATCATATC
* *
32397273 TTAACATAATTATTATTAAATATAATTTAATAA-CAT-TC
1 TTAATATGATTATTATTAAATATAA-TTAATAATCATATC
32397311 TTAATATGATTATTATTAAAATATGAATTAATAA
1 TTAATATGATTATTATT-AAATAT-AATTAATAA
32397345 AAATTATAAT
Statistics
Matches: 63, Mismatches: 6, Indels: 8
0.82 0.08 0.10
Matches are distributed among these distances:
38 16 0.25
39 16 0.25
40 5 0.08
41 22 0.35
42 4 0.06
ACGTcount: A:0.48, C:0.04, G:0.03, T:0.46
Consensus pattern (39 bp):
TTAATATGATTATTATTAAATATAATTAATAATCATATC
Found at i:32400060 original size:26 final size:27
Alignment explanation
Indices: 32400031--32400085 Score: 71
Period size: 26 Copynumber: 2.1 Consensus size: 27
32400021 CTTTAACATG
*
32400031 ATTTTTGGT-TGTTTA-ATTAAAGGTTA
1 ATTTTTGGTAT-TTTATAATAAAGGTTA
32400057 A-TTTTGGTATTTTATAATAAAGGTTA
1 ATTTTTGGTATTTTATAATAAAGGTTA
32400083 ATT
1 ATT
32400086 AATTAAAATA
Statistics
Matches: 25, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
25 11 0.44
26 13 0.52
27 1 0.04
ACGTcount: A:0.31, C:0.00, G:0.16, T:0.53
Consensus pattern (27 bp):
ATTTTTGGTATTTTATAATAAAGGTTA
Found at i:32401265 original size:20 final size:20
Alignment explanation
Indices: 32401227--32401265 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
32401217 TATGGTTGGA
* *
32401227 TTACTGTTGATATGTATAAG
1 TTACTGTTGATAAGGATAAG
32401247 TTACTGTTGATAAGGATAA
1 TTACTGTTGATAAGGATAA
32401266 ATTTCTATTA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.33, C:0.05, G:0.21, T:0.41
Consensus pattern (20 bp):
TTACTGTTGATAAGGATAAG
Found at i:32406327 original size:5 final size:5
Alignment explanation
Indices: 32406319--32406352 Score: 61
Period size: 5 Copynumber: 7.0 Consensus size: 5
32406309 AGTTAAGTTA
32406319 TATAT TATA- TATAT TATAT TATAT TATAT TATAT
1 TATAT TATAT TATAT TATAT TATAT TATAT TATAT
32406353 AATAAAAGAA
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
4 4 0.14
5 24 0.86
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (5 bp):
TATAT
Found at i:32407341 original size:22 final size:22
Alignment explanation
Indices: 32407306--32407418 Score: 120
Period size: 22 Copynumber: 5.0 Consensus size: 22
32407296 CTCTGATATG
*
32407306 TAGCACGTCAGTGCTCTCTGTT
1 TAGCACATCAGTGCTCTCTGTT
*
32407328 TAGCACATCTGTGCTCTCTGATT
1 TAGCACATCAGTGCTCTCTG-TT
*
32407351 GCTAGCACGTCAGTGCTCTCTGTT
1 --TAGCACATCAGTGCTCTCTGTT
* *
32407375 TAACACAT-ATGTGCTCTCTGTA
1 TAGCACATCA-GTGCTCTCTGTT
* *
32407397 TAGCACTTCAATGCTCTCTGTT
1 TAGCACATCAGTGCTCTCTGTT
32407419 CATTAGTGCA
Statistics
Matches: 75, Mismatches: 11, Indels: 10
0.78 0.11 0.10
Matches are distributed among these distances:
21 1 0.01
22 51 0.68
23 3 0.04
24 2 0.03
25 18 0.24
ACGTcount: A:0.18, C:0.27, G:0.19, T:0.37
Consensus pattern (22 bp):
TAGCACATCAGTGCTCTCTGTT
Found at i:32407362 original size:47 final size:46
Alignment explanation
Indices: 32407293--32407418 Score: 175
Period size: 47 Copynumber: 2.7 Consensus size: 46
32407283 ACTCTAGCGC
* *
32407293 GCTCTCTGATATGTAGCACGTCAGTGCTCTCTGTTTAGCACATCTGT
1 GCTCTCTGAT-TGTAGCACGTCAGTGCTCTCTGTTTAACACATATGT
32407340 GCTCTCTGATTGCTAGCACGTCAGTGCTCTCTGTTTAACACATATGT
1 GCTCTCTGATTG-TAGCACGTCAGTGCTCTCTGTTTAACACATATGT
* * *
32407387 GCTCTCTG--TATAGCACTTCAATGCTCTCTGTT
1 GCTCTCTGATTGTAGCACGTCAGTGCTCTCTGTT
32407419 CATTAGTGCA
Statistics
Matches: 73, Mismatches: 5, Indels: 5
0.88 0.06 0.06
Matches are distributed among these distances:
44 20 0.27
45 1 0.01
46 2 0.03
47 50 0.68
ACGTcount: A:0.17, C:0.26, G:0.19, T:0.37
Consensus pattern (46 bp):
GCTCTCTGATTGTAGCACGTCAGTGCTCTCTGTTTAACACATATGT
Found at i:32407366 original size:25 final size:24
Alignment explanation
Indices: 32407293--32407372 Score: 110
Period size: 25 Copynumber: 3.3 Consensus size: 24
32407283 ACTCTAGCGC
32407293 GCTCTCTGATATGTAGCACGTCAGT
1 GCTCTCTGAT-TGTAGCACGTCAGT
* *
32407318 GCTCTCTG-TT-TAGCACATCTGT
1 GCTCTCTGATTGTAGCACGTCAGT
32407340 GCTCTCTGATTGCTAGCACGTCAGT
1 GCTCTCTGATTG-TAGCACGTCAGT
32407365 GCTCTCTG
1 GCTCTCTG
32407373 TTTAACACAT
Statistics
Matches: 48, Mismatches: 4, Indels: 6
0.83 0.07 0.10
Matches are distributed among these distances:
22 18 0.38
23 3 0.06
24 1 0.02
25 26 0.54
ACGTcount: A:0.15, C:0.28, G:0.23, T:0.35
Consensus pattern (24 bp):
GCTCTCTGATTGTAGCACGTCAGT
Found at i:32408735 original size:159 final size:161
Alignment explanation
Indices: 32408435--32408747 Score: 477
Period size: 159 Copynumber: 2.0 Consensus size: 161
32408425 CACTATCAAT
* * *
32408435 AAACACAAAAATAAATTTTATACAGTTTGTCAAGAGTTAATAACAACAAAGTGAATAGAAGGAGA
1 AAACACAAAAATAAATCTTATACAGTTTGTCAAGAGTTAAGAACAACAAAGTAAATAGAA-GAGA
*
32408500 CCAAACAAAACCCGTTTTTAGATGGAGACCAAAACCATTTACCTCTCACAAAGAAAATAGAAAAG
65 CCAAACAAAACCCATTTTTAGATGGAGACCAAAACCATTTACCTCTCACAAAGAAAATAGAAAAG
*
32408565 GAAAAATAAAATAAAAAAGCATACACTGAAGG
130 GAAAAAGAAAATAAAAAAGCATACACTGAAGG
*
32408597 AAACACAAAAATAAATCTTATACAGTTTGTCAATAGTTAAGAACAACAAAGTAAATAG-A-AGAC
1 AAACACAAAAATAAATCTTATACAGTTTGTCAAGAGTTAAGAACAACAAAGTAAATAGAAGAGAC
* * *** *
32408660 CAAACAAAACTCATTTTTAGATGGAGACCAAAGCCATTTACCTCTCACGGGGAAAGTAGAAAAGG
66 CAAACAAAACCCATTTTTAGATGGAGACCAAAACCATTTACCTCTCACAAAGAAAATAGAAAAGG
* *
32408725 GAAAAGAAAATAGAAAAGCATAC
131 AAAAAGAAAATAAAAAAGCATAC
32408748 CTTGAAAGAA
Statistics
Matches: 137, Mismatches: 14, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
159 82 0.60
161 1 0.01
162 54 0.39
ACGTcount: A:0.51, C:0.15, G:0.15, T:0.19
Consensus pattern (161 bp):
AAACACAAAAATAAATCTTATACAGTTTGTCAAGAGTTAAGAACAACAAAGTAAATAGAAGAGAC
CAAACAAAACCCATTTTTAGATGGAGACCAAAACCATTTACCTCTCACAAAGAAAATAGAAAAGG
AAAAAGAAAATAAAAAAGCATACACTGAAGG
Found at i:32411861 original size:11 final size:11
Alignment explanation
Indices: 32411845--32411870 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
32411835 CTATAATTTA
32411845 ATTTTTATTGG
1 ATTTTTATTGG
32411856 ATTTTTATTGG
1 ATTTTTATTGG
32411867 ATTT
1 ATTT
32411871 CAGTTTCACG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.19, C:0.00, G:0.15, T:0.65
Consensus pattern (11 bp):
ATTTTTATTGG
Found at i:32412140 original size:13 final size:13
Alignment explanation
Indices: 32412122--32412149 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
32412112 GTATGATGTT
32412122 AACAAATCATTTC
1 AACAAATCATTTC
32412135 AACAAATCATTTC
1 AACAAATCATTTC
32412148 AA
1 AA
32412150 AAAAACAAAC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.50, C:0.21, G:0.00, T:0.29
Consensus pattern (13 bp):
AACAAATCATTTC
Found at i:32412188 original size:83 final size:82
Alignment explanation
Indices: 32412049--32412252 Score: 300
Period size: 83 Copynumber: 2.5 Consensus size: 82
32412039 GGTATACATC
* *
32412049 TTTCAACAAATGATTTCAAAAAACTAACAAAATATGTTATACTAACAAAATAATCCTATAACAGT
1 TTTCAACAAATCATTTCAAAAAACAAACAAAATATGTTATACTAACAAAATAATCCTATAACAGT
* *
32412114 ATGATGTTAACAAATCA
66 AAGATGTTAACAAACCA
* * **
32412131 TTTCAACAAATCATTTCAAAAAAACAAACAAAATATGTTATGCTAACAAAATGATCCTATAGTAG
1 TTTCAACAAATCATTTC-AAAAAACAAACAAAATATGTTATACTAACAAAATAATCCTATAACAG
*
32412196 TAAGATGTTAACTAACCA
65 TAAGATGTTAACAAACCA
* *
32412214 TTTTAACGAATCATTTCAAAAAACAAACAAAATATGTTA
1 TTTCAACAAATCATTTCAAAAAACAAACAAAATATGTTA
32412253 ACCATCTCAA
Statistics
Matches: 110, Mismatches: 11, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
82 38 0.35
83 72 0.65
ACGTcount: A:0.50, C:0.15, G:0.07, T:0.29
Consensus pattern (82 bp):
TTTCAACAAATCATTTCAAAAAACAAACAAAATATGTTATACTAACAAAATAATCCTATAACAGT
AAGATGTTAACAAACCA
Found at i:32412614 original size:157 final size:154
Alignment explanation
Indices: 32412330--32412782 Score: 434
Period size: 157 Copynumber: 2.9 Consensus size: 154
32412320 ATGCCATCCT
* * * * * * * * *
32412330 TTTTTGGCTTCTAGTTTTCATACTCGTACCAGATTGAGA--ACAAAAATCTGAACCCCAAATTAG
1 TTTTTGGCTTCTAATTCTCGTACTCATACCAGACTAAGACCAAAAAAATC-AAAACCCAAATTAG
* * ** * *
32412393 ATTTAAATAATTTGGAATTG--ATTAAAAAAATGTTTACAATATACTTGTGATCCAGTTGTGTTA
65 ATTTAAATATTTTGGAATTGACATT--AAAAA-GTTTATACGATACCTGTGATCCAGTTGTATTA
* **
32412456 GGTTGAATGCATGGTGTTCTGTTGTTCTT
127 GGTTGAATGCATGGTGTTATGTTGTT-AG
*
32412485 TTTTTGGCTTCTAGTTCGT-GTACTCATACCAGACTAAGACCAAAAAAATCAAAAACCCAAATTA
1 TTTTTGGCTTCTAATTC-TCGTACTCATACCAGACTAAGACCAAAAAAATC-AAAACCCAAATTA
* *
32412549 GATTAAAATATTTTTGAATTGACATTAAAATAGTTTATACGATACCTGTGATCCAGTTGTATTAG
64 GATTTAAATATTTTGGAATTGACATTAAAA-AGTTTATACGATACCTGTGATCCAGTTGTATTAG
32412614 GTTGAATGCATGGTGTTATGTTGTTAG
128 GTTGAATGCATGGTGTTATGTTGTTAG
* * * ** * *
32412641 TTTTTGGGTTCTAATTCTCGTACTCGTACTAGACTAAGACCAAAAAGTTCAGAACCCAAATTACA
1 TTTTTGGCTTCTAATTCTCGTACTCATACCAGACTAAGACCAAAAAAATCAAAACCCAAATTAGA
** * * * *
32412706 TTTTCATATTTTGGAATTGACAATGAAAAAGTGTT-TACGATATACCTGTGTTCCTA-TTTTTTT
66 TTTAAATATTTTGGAATTGAC-ATTAAAAAGT-TTATACG--ATACCTGTGATCC-AGTTGTATT
32412769 AGGTTGAATGCATG
126 AGGTTGAATGCATG
32412783 ATATTTTGTT
Statistics
Matches: 250, Mismatches: 36, Indels: 22
0.81 0.12 0.07
Matches are distributed among these distances:
155 70 0.28
156 51 0.20
157 124 0.50
158 2 0.01
159 3 0.01
ACGTcount: A:0.32, C:0.14, G:0.17, T:0.38
Consensus pattern (154 bp):
TTTTTGGCTTCTAATTCTCGTACTCATACCAGACTAAGACCAAAAAAATCAAAACCCAAATTAGA
TTTAAATATTTTGGAATTGACATTAAAAAGTTTATACGATACCTGTGATCCAGTTGTATTAGGTT
GAATGCATGGTGTTATGTTGTTAG
Found at i:32413276 original size:15 final size:16
Alignment explanation
Indices: 32413243--32413279 Score: 51
Period size: 15 Copynumber: 2.4 Consensus size: 16
32413233 CTTGGTTTCG
32413243 TTTTTATCTTTATTAT
1 TTTTTATCTTTATTAT
32413259 TTTTTAT-TTTCATT-T
1 TTTTTATCTTT-ATTAT
32413274 TTTTTA
1 TTTTTA
32413280 CAAACTGAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
15 10 0.50
16 10 0.50
ACGTcount: A:0.16, C:0.05, G:0.00, T:0.78
Consensus pattern (16 bp):
TTTTTATCTTTATTAT
Found at i:32414060 original size:28 final size:28
Alignment explanation
Indices: 32414022--32414082 Score: 81
Period size: 28 Copynumber: 2.2 Consensus size: 28
32414012 ATCATTTTCT
*
32414022 TTATTATTTTA-ATGTATTATCATTTATTA
1 TTATTATTTTACA-ATATTATCATTTA-TA
32414051 TTATTA-TTTACAATATTATCATTTATA
1 TTATTATTTTACAATATTATCATTTATA
32414078 TTATT
1 TTATT
32414083 TATCATACTA
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
27 7 0.23
28 16 0.53
29 7 0.23
ACGTcount: A:0.33, C:0.05, G:0.02, T:0.61
Consensus pattern (28 bp):
TTATTATTTTACAATATTATCATTTATA
Found at i:32425759 original size:108 final size:108
Alignment explanation
Indices: 32425570--32425766 Score: 277
Period size: 108 Copynumber: 1.8 Consensus size: 108
32425560 CATTTTGTAT
* * * *
32425570 CTTAGCAAAATTTACTATTTTGATTAATTTATTCATTTCAAGCTTTGTTCTCAATAAAATTTCAT
1 CTTAGCAAAATTTACTATCTTGATTAATTTATTCATTTCAAGCCTTATTCTCAATAAAATTCCAT
*
32425635 CTTATTCATTGTGATAATCCTTTTAATCTTTTTTATTATGAAC
66 CTTATCCATTGTGATAATCCTTTTAATCTTTTTTATTATGAAC
* * ** *
32425678 CTTAGCAAAATTTGCTATCTTGATTAATTTATTTATTTTGAGCCTTATTCTCAATTAAATTCCAT
1 CTTAGCAAAATTTACTATCTTGATTAATTTATTCATTTCAAGCCTTATTCTCAATAAAATTCCAT
* * *
32425743 CTTGTCCATTTTGATAATCTTTTT
66 CTTATCCATTGTGATAATCCTTTT
32425767 TAAGAATTTT
Statistics
Matches: 76, Mismatches: 13, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
108 76 1.00
ACGTcount: A:0.28, C:0.15, G:0.07, T:0.50
Consensus pattern (108 bp):
CTTAGCAAAATTTACTATCTTGATTAATTTATTCATTTCAAGCCTTATTCTCAATAAAATTCCAT
CTTATCCATTGTGATAATCCTTTTAATCTTTTTTATTATGAAC
Found at i:32426310 original size:107 final size:107
Alignment explanation
Indices: 32426124--32426340 Score: 416
Period size: 107 Copynumber: 2.0 Consensus size: 107
32426114 TGATAGCAGA
*
32426124 GGATTGAGAAAAGCCAGATTTTTCTACCCTTGAATTACAGTGGGAGGAGGATGGTTCAAATTTTA
1 GGATTGAGAAAAGCCAGATCTTTCTACCCTTGAATTACAGTGGGAGGAGGATGGTTCAAATTTTA
32426189 AGTCCCAAAATTACAAGTGGACTTAACCTTGAAGATTACAGT
66 AGTCCCAAAATTACAAGTGGACTTAACCTTGAAGATTACAGT
32426231 GGATTGAGAAAAGCCAGATCTTTCTACCCTTGAATTACAGTGGGAGGAGGATGGTTCAAATTTTA
1 GGATTGAGAAAAGCCAGATCTTTCTACCCTTGAATTACAGTGGGAGGAGGATGGTTCAAATTTTA
*
32426296 AGTCCCAAAATTACAAGTGGACTTAACTTTGAAGATTACAGT
66 AGTCCCAAAATTACAAGTGGACTTAACCTTGAAGATTACAGT
32426338 GGA
1 GGA
32426341 GGCAATCTGA
Statistics
Matches: 108, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
107 108 1.00
ACGTcount: A:0.34, C:0.15, G:0.23, T:0.29
Consensus pattern (107 bp):
GGATTGAGAAAAGCCAGATCTTTCTACCCTTGAATTACAGTGGGAGGAGGATGGTTCAAATTTTA
AGTCCCAAAATTACAAGTGGACTTAACCTTGAAGATTACAGT
Found at i:32426719 original size:44 final size:44
Alignment explanation
Indices: 32426655--32427343 Score: 563
Period size: 44 Copynumber: 15.8 Consensus size: 44
32426645 TCATATCAAG
* * *
32426655 TCCTATCTCCCTAAGTAGTAGTGGAGCAGGTCGAATATGGTAGA
1 TCCTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTAGA
* * *
32426699 TCCTATCTCCCTAAGCAGTAGTGGAGTAGATCGAAGACGG-CGAA
1 TCCTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTAG-A
* * * ** *****
32426743 TCTTATCTTCCTAAGCAGTAGTGAAGCAGATTTAAGCCACCAG-
1 TCCTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTAGA
* * *
32426786 TCCTATCTCCCTAAGTAGTAGTAGAGCAGTTCGAAGATGGTAGA
1 TCCTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTAGA
*
32426830 TCCTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGT-GAA
1 TCCTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTAG-A
* * * * ** *****
32426874 TCTTATCTTCCTAAGCAGTAGTGAAGTAGATTTAAGCCACCAG-
1 TCCTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTAGA
* *
32426917 TCATATCTCCCTAAGCAGTAGTGGAGCAGGTCGAAGATGGTAGA
1 TCCTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTAGA
* *
32426961 TCCTATCTCCCTAAGCAGTAGTGGAGCAGGTCAAAGATGGTAGA
1 TCCTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTAGA
** * *
32427005 TTTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGG-CGAA
1 TCCTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTAG-A
* * * ** *
32427049 TCTTATCTTCCTAAGCAGTAGTGAAGCAGATTTAAGCCAT--CAG-
1 TCCTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAG--ATGGTAGA
*
32427092 TCCTATCTCCCTAAGCAGTAGTGGAGCAGGTCGAAGATGGTAGA
1 TCCTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTAGA
* * * * *
32427136 TCCTATCTCCTTAAGCAGTAGTAGAGCAGGTCAAAGTTGGTAGA
1 TCCTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTAGA
* * *
32427180 TCCTATCTCCCTAAGCAATAGTGGAGCAGATCGAAGACGG-CGAA
1 TCCTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTAG-A
* * * * ** *****
32427224 TCTTATCTTCCTAAGCAATAGTGAAGCAGATTTAAGCCACCAG-
1 TCCTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTAGA
* * * * * *
32427267 TCCTATCTCCC-AGAGTAGCAGTGGAGTAGGTTGAAGATTGTAGA
1 TCCTATCTCCCTA-AGCAGTAGTGGAGCAGATCGAAGATGGTAGA
* * * *
32427311 TCTTATCTCTCTAAGCAATAGTAGAGCAGATCG
1 TCCTATCTCCCTAAGCAGTAGTGGAGCAGATCG
32427344 CATCCAGTCT
Statistics
Matches: 506, Mismatches: 121, Indels: 36
0.76 0.18 0.05
Matches are distributed among these distances:
41 2 0.00
42 1 0.00
43 124 0.25
44 373 0.74
45 5 0.01
46 1 0.00
ACGTcount: A:0.30, C:0.21, G:0.25, T:0.25
Consensus pattern (44 bp):
TCCTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTAGA
Found at i:32426813 original size:131 final size:130
Alignment explanation
Indices: 32426653--32427254 Score: 622
Period size: 131 Copynumber: 4.6 Consensus size: 130
32426643 CATCATATCA
*
32426653 AGTCCTATCTCCCTAAGTAGTAGTGGAGCAGGTCGAATATGGTAGATCCTATCTCCCTAAGCAGT
1 AGTCCTATCTCCCTAAGTAGTAGTGGAGCAGGTCGAAGATGGTAGATCCTATCTCCCTAAGCAGT
*
32426718 AGTGGAGTAGATCGAAGACGGCGAATCTTATCTTCCTAAGCAGTAGTGAAGCAGATTTAAGCCAC
66 AGTGGAGCAGATCGAAGACGG-GAATCTTATCTTCCTAAGCAGTAGTGAAGCAGATTTAAGCCAC
32426783 C
130 C
* *
32426784 AGTCCTATCTCCCTAAGTAGTAGTAGAGCAGTTCGAAGATGGTAGATCCTATCTCCCTAAGCAGT
1 AGTCCTATCTCCCTAAGTAGTAGTGGAGCAGGTCGAAGATGGTAGATCCTATCTCCCTAAGCAGT
*
32426849 AGTGGAGCAGATCGAAGACGGTGAATCTTATCTTCCTAAGCAGTAGTGAAGTAGATTTAAGCCAC
66 AGTGGAGCAGATCGAAGACGG-GAATCTTATCTTCCTAAGCAGTAGTGAAGCAGATTTAAGCCAC
32426914 C
130 C
* *
32426915 AGTCATATCTCCCTAAGCAGTAGTGGAGCAGGTCGAAGATGGTAGATCCTATCTCCCTAAGCAGT
1 AGTCCTATCTCCCTAAGTAGTAGTGGAGCAGGTCGAAGATGGTAGATCCTATCTCCCTAAGCAGT
* * * * * * * ** **
32426980 AGTGGAGCAGGTCAAAGATGGTAGATTTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGG
66 AGTGGAGCAGATCGAAGACGGGA-ATCTTATCTTCCTAAGCAGTAGTGAAGCAGATTTAAG-CCA
*
32427045 CG
129 CC
* * * * * * ** *
32427047 AATCTTATCTTCCTAAGCAGTAGTGAAGCAGATTTAAGCCAT--CAG-TCCTATCTCCCTAAGCA
1 AGTCCTATCTCCCTAAGTAGTAGTGGAGCAGGTCGAAG--ATGGTAGATCCTATCTCCCTAAGCA
* * * * * **
32427109 GTAGTGGAGCAGGTCGAAGATGGTAGATCCTATC-TCCTTAAGCAGTAGT-AGAGCAGGTCAAAG
64 GTAGTGGAGCAGATCGAAGACGGGA-ATCTTATCTTCC-TAAGCAGTAGTGA-AGCAGATTTAAG
*****
32427172 TTGGT
126 CCACC
* * * * * * *
32427177 AGATCCTATCTCCCTAAGCAATAGTGGAGCAGATCGAAGACGG-CGAATCTTATCTTCCTAAGCA
1 AG-TCCTATCTCCCTAAGTAGTAGTGGAGCAGGTCGAAGATGGTAG-ATCCTATCTCCCTAAGCA
* *
32427241 ATAGTGAAGCAGAT
64 GTAGTGGAGCAGAT
32427255 TTAAGCCACC
Statistics
Matches: 404, Mismatches: 56, Indels: 21
0.84 0.12 0.04
Matches are distributed among these distances:
129 1 0.00
130 6 0.01
131 334 0.83
132 61 0.15
134 2 0.00
ACGTcount: A:0.30, C:0.21, G:0.25, T:0.25
Consensus pattern (130 bp):
AGTCCTATCTCCCTAAGTAGTAGTGGAGCAGGTCGAAGATGGTAGATCCTATCTCCCTAAGCAGT
AGTGGAGCAGATCGAAGACGGGAATCTTATCTTCCTAAGCAGTAGTGAAGCAGATTTAAGCCACC
Found at i:32426820 original size:87 final size:87
Alignment explanation
Indices: 32426699--32427210 Score: 260
Period size: 87 Copynumber: 5.9 Consensus size: 87
32426689 ATATGGTAGA
* * * *
32426699 TCCTATCTCCCTAAGCAGTAGTGGAGTAGATCGAAGACGGCGA-ATCTTATCTTCCTAAGCAGTA
1 TCCTATCTCCCTAAGCAGTAGTAGAGCAGATCGAAGACGG-GAGATCCTATCTCCCTAAGCAGTA
32426763 GTGAAGCAGATTTAAGCCACCAG
65 GTGAAGCAGATTTAAGCCACCAG
* * * *
32426786 TCCTATCTCCCTAAGTAGTAGTAGAGCAGTTCGAAGATGGTAGATCCTATCTCCCTAAGCAGTAG
1 TCCTATCTCCCTAAGCAGTAGTAGAGCAGATCGAAGACGGGAGATCCTATCTCCCTAAGCAGTAG
* ** **** *
32426851 TGGAGCAGATCGAAGACGGTGAA
66 TGAAGCAGATTTAAG-CCACCAG
* * * ** * *** *
32426874 TCTTATCTTCCTAAGCAGTAGT-GAAGTAGATTTAAGCCACCAG-TCATATCTCCCTAAGCAGTA
1 TCCTATCTCCCTAAGCAGTAGTAG-AGCAGATCGAAGACGGGAGATCCTATCTCCCTAAGCAGTA
* * ** *****
32426937 GTGGAGCAGGTCGAAGATGGTAG
65 GTGAAGCAGATTTAAGCCACCAG
* * * * * **
32426960 ATCCTATCTCCCTAAGCAGTAGTGGAGCAGGTCAAAGATGGTAGATTTTATCTCCCTAAGCAGTA
1 -TCCTATCTCCCTAAGCAGTAGTAGAGCAGATCGAAGACGGGAGATCCTATCTCCCTAAGCAGTA
* ** ** * *
32427025 GTGGAGCAGATCGAAGACGGCGAA
65 GTGAAGCAGATTTAAG-CCACCAG
* * ** * ***
32427049 TCTTATCTTCCTAAGCAGTAGT-GAAGCAGATTTAAGCCATCAG-TCCTATCTCCCTAAGCAGTA
1 TCCTATCTCCCTAAGCAGTAGTAG-AGCAGATCGAAGACGGGAGATCCTATCTCCCTAAGCAGTA
* * ** *****
32427112 GTGGAGCAGGTCGAAGATGGTAG
65 GTGAAGCAGATTTAAGCCACCAG
* * * ** * *
32427135 ATCCTATCTCCTTAAGCAGTAGTAGAGCAGGTCAAAGTTGGTAGATCCTATCTCCCTAAGCAATA
1 -TCCTATCTCCCTAAGCAGTAGTAGAGCAGATCGAAGACGGGAGATCCTATCTCCCTAAGCAGTA
*
32427200 GTGGAGCAGAT
65 GTGAAGCAGAT
32427211 CGAAGACGGC
Statistics
Matches: 329, Mismatches: 85, Indels: 21
0.76 0.20 0.05
Matches are distributed among these distances:
86 5 0.02
87 196 0.60
88 126 0.38
89 2 0.01
ACGTcount: A:0.29, C:0.21, G:0.25, T:0.25
Consensus pattern (87 bp):
TCCTATCTCCCTAAGCAGTAGTAGAGCAGATCGAAGACGGGAGATCCTATCTCCCTAAGCAGTAG
TGAAGCAGATTTAAGCCACCAG
Found at i:32426967 original size:175 final size:175
Alignment explanation
Indices: 32426786--32427339 Score: 894
Period size: 175 Copynumber: 3.2 Consensus size: 175
32426776 AAGCCACCAG
* * *
32426786 TCCTATCTCCCTAAGTAGTAGTAGAGCAGTTCGAAGATGGTAGATCCTATCTCCCTAAGCAGTAG
1 TCCTATCTCCCTAAGCAGTAGTAGAGCAGGTCAAAGATGGTAGATCCTATCTCCCTAAGCAGTAG
* *
32426851 TGGAGCAGATCGAAGACGGTGAATCTTATCTTCCTAAGCAGTAGTGAAGTAGATTTAAGCCACCA
66 TGGAGCAGATCGAAGACGGCGAATCTTATCTTCCTAAGCAGTAGTGAAGCAGATTTAAGCCACCA
*
32426916 GTCATATCTCCCTAAGCAGTAGTGGAGCAGGTCGAAGATGGTAGA
131 GTCCTATCTCCCTAAGCAGTAGTGGAGCAGGTCGAAGATGGTAGA
* **
32426961 TCCTATCTCCCTAAGCAGTAGTGGAGCAGGTCAAAGATGGTAGATTTTATCTCCCTAAGCAGTAG
1 TCCTATCTCCCTAAGCAGTAGTAGAGCAGGTCAAAGATGGTAGATCCTATCTCCCTAAGCAGTAG
*
32427026 TGGAGCAGATCGAAGACGGCGAATCTTATCTTCCTAAGCAGTAGTGAAGCAGATTTAAGCCATCA
66 TGGAGCAGATCGAAGACGGCGAATCTTATCTTCCTAAGCAGTAGTGAAGCAGATTTAAGCCACCA
32427091 GTCCTATCTCCCTAAGCAGTAGTGGAGCAGGTCGAAGATGGTAGA
131 GTCCTATCTCCCTAAGCAGTAGTGGAGCAGGTCGAAGATGGTAGA
* * *
32427136 TCCTATCTCCTTAAGCAGTAGTAGAGCAGGTCAAAGTTGGTAGATCCTATCTCCCTAAGCAATAG
1 TCCTATCTCCCTAAGCAGTAGTAGAGCAGGTCAAAGATGGTAGATCCTATCTCCCTAAGCAGTAG
*
32427201 TGGAGCAGATCGAAGACGGCGAATCTTATCTTCCTAAGCAATAGTGAAGCAGATTTAAGCCACCA
66 TGGAGCAGATCGAAGACGGCGAATCTTATCTTCCTAAGCAGTAGTGAAGCAGATTTAAGCCACCA
* * * * *
32427266 GTCCTATCTCCC-AGAGTAGCAGTGGAGTAGGTTGAAGATTGTAGA
131 GTCCTATCTCCCTA-AGCAGTAGTGGAGCAGGTCGAAGATGGTAGA
* * *
32427311 TCTTATCTCTCTAAGCAATAGTAGAGCAG
1 TCCTATCTCCCTAAGCAGTAGTAGAGCAG
32427340 ATCGCATCCA
Statistics
Matches: 351, Mismatches: 27, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
174 1 0.00
175 350 1.00
ACGTcount: A:0.30, C:0.20, G:0.25, T:0.25
Consensus pattern (175 bp):
TCCTATCTCCCTAAGCAGTAGTAGAGCAGGTCAAAGATGGTAGATCCTATCTCCCTAAGCAGTAG
TGGAGCAGATCGAAGACGGCGAATCTTATCTTCCTAAGCAGTAGTGAAGCAGATTTAAGCCACCA
GTCCTATCTCCCTAAGCAGTAGTGGAGCAGGTCGAAGATGGTAGA
Found at i:32428092 original size:15 final size:16
Alignment explanation
Indices: 32428059--32428095 Score: 51
Period size: 15 Copynumber: 2.4 Consensus size: 16
32428049 CTTCGTTTCG
32428059 TTTTTATCTTTATTAT
1 TTTTTATCTTTATTAT
32428075 TTTTTAT-TTTCATT-T
1 TTTTTATCTTT-ATTAT
32428090 TTTTTA
1 TTTTTA
32428096 CAAACGGAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
15 10 0.50
16 10 0.50
ACGTcount: A:0.16, C:0.05, G:0.00, T:0.78
Consensus pattern (16 bp):
TTTTTATCTTTATTAT
Found at i:32428899 original size:28 final size:28
Alignment explanation
Indices: 32428861--32428921 Score: 81
Period size: 28 Copynumber: 2.2 Consensus size: 28
32428851 ATCATTTTCT
*
32428861 TTATTATTTTA-ATGTATTATCATTTATTA
1 TTATTATTTTACA-ATATTATCATTTA-TA
32428890 TTATTA-TTTACAATATTATCATTTATA
1 TTATTATTTTACAATATTATCATTTATA
32428917 TTATT
1 TTATT
32428922 TATCATACTA
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
27 7 0.23
28 16 0.53
29 7 0.23
ACGTcount: A:0.33, C:0.05, G:0.02, T:0.61
Consensus pattern (28 bp):
TTATTATTTTACAATATTATCATTTATA
Found at i:32429247 original size:2 final size:2
Alignment explanation
Indices: 32429236--32429276 Score: 75
Period size: 2 Copynumber: 21.0 Consensus size: 2
32429226 ATACCTTTCT
32429236 TA TA -A TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
32429277 CTCTACCCTT
Statistics
Matches: 38, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
1 1 0.03
2 37 0.97
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
TA
Found at i:32432488 original size:6 final size:6
Alignment explanation
Indices: 32432471--32432516 Score: 83
Period size: 6 Copynumber: 7.7 Consensus size: 6
32432461 ACAACCTCAC
*
32432471 CACCCT CTCCCT CACCCT CACCCT CACCCT CACCCT CACCCT CACC
1 CACCCT CACCCT CACCCT CACCCT CACCCT CACCCT CACCCT CACC
32432517 ATATTTACTA
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
6 38 1.00
ACGTcount: A:0.15, C:0.67, G:0.00, T:0.17
Consensus pattern (6 bp):
CACCCT
Found at i:32432551 original size:6 final size:6
Alignment explanation
Indices: 32432540--32432566 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
32432530 ACAACCTCAC
32432540 CACCCT CACCCT CACCCT CACCCT CAC
1 CACCCT CACCCT CACCCT CACCCT CAC
32432567 TACATTTACT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.19, C:0.67, G:0.00, T:0.15
Consensus pattern (6 bp):
CACCCT
Found at i:32432553 original size:51 final size:51
Alignment explanation
Indices: 32432489--32432600 Score: 179
Period size: 51 Copynumber: 2.2 Consensus size: 51
32432479 CCCTCACCCT
* *
32432489 CACCCTCACCCTCACCCTCACCCTCACCATATTTACTACTAACAACCTCAC
1 CACCCTCACCCTCACCCTCACCCTCACCACATTTACTACCAACAACCTCAC
* *
32432540 CACCCTCACCCTCACCCTCACCCTCACTACATTTACTACCAACAACGTCAC
1 CACCCTCACCCTCACCCTCACCCTCACCACATTTACTACCAACAACCTCAC
*
32432591 CATCCTCACC
1 CACCCTCACC
32432601 ACCTTTATTA
Statistics
Matches: 56, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
51 56 1.00
ACGTcount: A:0.27, C:0.52, G:0.01, T:0.21
Consensus pattern (51 bp):
CACCCTCACCCTCACCCTCACCCTCACCACATTTACTACCAACAACCTCAC
Found at i:32435019 original size:9 final size:9
Alignment explanation
Indices: 32434984--32435020 Score: 56
Period size: 9 Copynumber: 4.0 Consensus size: 9
32434974 TTGGTCAGTG
32434984 TTTAATTTGT
1 TTTAA-TTGT
*
32434994 TTTAATTTT
1 TTTAATTGT
32435003 TTTAATTGT
1 TTTAATTGT
32435012 TTTAATTGT
1 TTTAATTGT
32435021 GGGTAAACCT
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
9 20 0.80
10 5 0.20
ACGTcount: A:0.22, C:0.00, G:0.08, T:0.70
Consensus pattern (9 bp):
TTTAATTGT
Found at i:32435450 original size:15 final size:15
Alignment explanation
Indices: 32435430--32435458 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
32435420 AATAAATAAA
32435430 AAATAATTTATATAT
1 AAATAATTTATATAT
32435445 AAATAATTTATATA
1 AAATAATTTATATA
32435459 ATTATCTTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (15 bp):
AAATAATTTATATAT
Found at i:32441436 original size:3 final size:3
Alignment explanation
Indices: 32441428--32441457 Score: 60
Period size: 3 Copynumber: 10.0 Consensus size: 3
32441418 TTGGTGATAC
32441428 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
32441458 GGATTTAATT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:32442643 original size:30 final size:29
Alignment explanation
Indices: 32442609--32442673 Score: 69
Period size: 30 Copynumber: 2.2 Consensus size: 29
32442599 TTAGTAAAGG
*
32442609 TAAAATTTTACTTTAACCCCTCT-AAAATTA
1 TAAAATTTGA-TTTAA-CCCTCTAAAAATTA
* *
32442639 TAAAAATTTGATTTAATCCTTTAAAAATTA
1 T-AAAATTTGATTTAACCCTCTAAAAATTA
32442669 TAAAA
1 TAAAA
32442674 ATATAGACTA
Statistics
Matches: 30, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
29 8 0.27
30 14 0.47
31 8 0.27
ACGTcount: A:0.46, C:0.12, G:0.02, T:0.40
Consensus pattern (29 bp):
TAAAATTTGATTTAACCCTCTAAAAATTA
Found at i:32448723 original size:44 final size:44
Alignment explanation
Indices: 32448640--32448723 Score: 123
Period size: 44 Copynumber: 1.9 Consensus size: 44
32448630 CCAAACATTT
*
32448640 ATATAGAATTACAATGTAATTACATTCTATCATCAAAACACGAC
1 ATATAGAATTACAATGTAATTACATTCTATCAACAAAACACGAC
** * *
32448684 ATATAGAATTATGATGTAATTACATTCTATTAACCAAACA
1 ATATAGAATTACAATGTAATTACATTCTATCAACAAAACA
32448724 TGTTTAGAGA
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
44 35 1.00
ACGTcount: A:0.45, C:0.15, G:0.07, T:0.32
Consensus pattern (44 bp):
ATATAGAATTACAATGTAATTACATTCTATCAACAAAACACGAC
Found at i:32449109 original size:21 final size:20
Alignment explanation
Indices: 32449085--32449128 Score: 52
Period size: 21 Copynumber: 2.1 Consensus size: 20
32449075 ATTTATCTCC
* *
32449085 AATCCTAATGAATATAAAGAA
1 AATCATAATAAATA-AAAGAA
*
32449106 AATCATAATAAATAAAATAA
1 AATCATAATAAATAAAAGAA
32449126 AAT
1 AAT
32449129 ATACTTTATA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
20 8 0.40
21 12 0.60
ACGTcount: A:0.64, C:0.07, G:0.05, T:0.25
Consensus pattern (20 bp):
AATCATAATAAATAAAAGAA
Found at i:32452971 original size:59 final size:61
Alignment explanation
Indices: 32452906--32453029 Score: 198
Period size: 59 Copynumber: 2.1 Consensus size: 61
32452896 ATCCATATTT
32452906 TTGGAAAATCAAAGATATGGGTATCAAATAATAGAAAGTCAAAG-TATGGGTATC-AAATA
1 TTGGAAAATCAAAGATATGGGTATCAAATAATAGAAAGTCAAAGATATGGGTATCGAAATA
* * * *
32452965 TTGGAAAGTCAAAGATATGGGTATCAAATATTGGAAAGTCAAAGATATGGGTATCGAGATA
1 TTGGAAAATCAAAGATATGGGTATCAAATAATAGAAAGTCAAAGATATGGGTATCGAAATA
32453026 TTGG
1 TTGG
32453030 CATAATAAAA
Statistics
Matches: 59, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
59 41 0.69
60 10 0.17
61 8 0.14
ACGTcount: A:0.43, C:0.06, G:0.24, T:0.27
Consensus pattern (61 bp):
TTGGAAAATCAAAGATATGGGTATCAAATAATAGAAAGTCAAAGATATGGGTATCGAAATA
Found at i:32452986 original size:30 final size:30
Alignment explanation
Indices: 32452906--32453029 Score: 196
Period size: 30 Copynumber: 4.1 Consensus size: 30
32452896 ATCCATATTT
*
32452906 TTGGAAAATCAAAGATATGGGTATCAAATA
1 TTGGAAAGTCAAAGATATGGGTATCAAATA
* *
32452936 ATAGAAAGTCAAAG-TATGGGTATCAAATA
1 TTGGAAAGTCAAAGATATGGGTATCAAATA
32452965 TTGGAAAGTCAAAGATATGGGTATCAAATA
1 TTGGAAAGTCAAAGATATGGGTATCAAATA
*
32452995 TTGGAAAGTCAAAGATATGGGTATCGAGATA
1 TTGGAAAGTCAAAGATATGGGTATC-AAATA
32453026 TTGG
1 TTGG
32453030 CATAATAAAA
Statistics
Matches: 86, Mismatches: 6, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
29 27 0.31
30 51 0.59
31 8 0.09
ACGTcount: A:0.43, C:0.06, G:0.24, T:0.27
Consensus pattern (30 bp):
TTGGAAAGTCAAAGATATGGGTATCAAATA
Found at i:32469600 original size:153 final size:153
Alignment explanation
Indices: 32469322--32469630 Score: 474
Period size: 153 Copynumber: 2.0 Consensus size: 153
32469312 TTGGGACTAG
* * * * *
32469322 GGGTGAGTTTGGATGGGCAGTGCGTTTACTTGCGGTTAGTGTAAAAATAGCGGTGGCGGTGAGAT
1 GGGTGAGTTTGGATGGGCAGTACGTTTACCTGCGGTTAGTGTAAAAACAACGGTGACGGTGAGAT
*
32469387 TAGATACTGTAGCAATACTGTAGCGTGGGACAAAAAGTAAGTTAAACGCACCGCACCGCACCCAA
66 TAGATACTGTAGCAATACTGTAGCGTGAGACAAAAAGTAAGTTAAACGCACCGCACCGCACCCAA
32469452 TCGCCCATCCAAACCCACCCTTA
131 TCGCCCATCCAAACCCACCCTTA
* *
32469475 GGGTGAGTTTGGATGGGCGGTACGTTTACCTGCGGTTAGTGTAAAAACAACGGTGATGGTGAGAT
1 GGGTGAGTTTGGATGGGCAGTACGTTTACCTGCGGTTAGTGTAAAAACAACGGTGACGGTGAGAT
*
32469540 TAGATACTGTAGCAATACTGTAGCGTGAGACAAAAAGTAAAGTAAACGCACCGCACCGCACCGCA
66 TAGATACTGTAGCAATACTGTAGCGTGAGACAAAAAGT-AAGTTAA---A-CGCACCGCACCGCA
* *
32469605 CCCAATCACCCATCCAAATCCACCCT
126 CCCAATCGCCCATCCAAACCCACCCT
32469631 AGGTCTGCTG
Statistics
Matches: 140, Mismatches: 11, Indels: 5
0.90 0.07 0.03
Matches are distributed among these distances:
153 95 0.68
154 6 0.04
157 1 0.01
158 38 0.27
ACGTcount: A:0.29, C:0.23, G:0.26, T:0.21
Consensus pattern (153 bp):
GGGTGAGTTTGGATGGGCAGTACGTTTACCTGCGGTTAGTGTAAAAACAACGGTGACGGTGAGAT
TAGATACTGTAGCAATACTGTAGCGTGAGACAAAAAGTAAGTTAAACGCACCGCACCGCACCCAA
TCGCCCATCCAAACCCACCCTTA
Found at i:32481246 original size:72 final size:72
Alignment explanation
Indices: 32481125--32481268 Score: 234
Period size: 72 Copynumber: 2.0 Consensus size: 72
32481115 TTGATACATT
* * *
32481125 TATGTGGTGTAATATTATGCACTTGGATAATGTTCTTACTATGTGGTGTACCATTAATTATGTAT
1 TATGTGATGTAATATTATGCACTTGGACAATGTTATTACTATGTGGTGTACCATTAATTATGTAT
32481190 TTGGATA
66 TTGGATA
* * *
32481197 TATGTGATGTAATATTATTCACTTGGACAATGTTATTATTATGTTGTGTACCATTAATTATGTAT
1 TATGTGATGTAATATTATGCACTTGGACAATGTTATTACTATGTGGTGTACCATTAATTATGTAT
32481262 TTGGATA
66 TTGGATA
32481269 ATAATATTAT
Statistics
Matches: 66, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
72 66 1.00
ACGTcount: A:0.28, C:0.08, G:0.19, T:0.46
Consensus pattern (72 bp):
TATGTGATGTAATATTATGCACTTGGACAATGTTATTACTATGTGGTGTACCATTAATTATGTAT
TTGGATA
Found at i:32481478 original size:14 final size:14
Alignment explanation
Indices: 32481459--32481486 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
32481449 ATAATTTATT
32481459 AATATATATTAATA
1 AATATATATTAATA
32481473 AATATATATTAATA
1 AATATATATTAATA
32481487 TATGTAAAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (14 bp):
AATATATATTAATA
Found at i:32481487 original size:24 final size:25
Alignment explanation
Indices: 32481437--32481489 Score: 74
Period size: 24 Copynumber: 2.2 Consensus size: 25
32481427 AATCATTGCA
*
32481437 ATATATGTAAAAATAATTTATTAAT
1 ATATATGTAAAAATAATATATTAAT
32481462 ATATAT-TAATAAAT-ATATATTAAT
1 ATATATGTAA-AAATAATATATTAAT
32481486 ATAT
1 ATAT
32481490 GTAAAATATA
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
24 16 0.62
25 10 0.38
ACGTcount: A:0.53, C:0.00, G:0.02, T:0.45
Consensus pattern (25 bp):
ATATATGTAAAAATAATATATTAAT
Found at i:32481560 original size:32 final size:33
Alignment explanation
Indices: 32481519--32481603 Score: 102
Period size: 32 Copynumber: 2.6 Consensus size: 33
32481509 AACTTTTCCG
* *
32481519 GAAAATATTTT-CAGGAAATCTGCCAAACAGCA
1 GAAAATATTTTACAGCAAATCTACCAAACAGCA
* *
32481551 GAAAATATTTTACA-CAGATTTACCAAACAGCA
1 GAAAATATTTTACAGCAAATCTACCAAACAGCA
* *
32481583 GAAAATATTTTCCAGTAAATC
1 GAAAATATTTTACAGCAAATC
32481604 ATTTTACAGA
Statistics
Matches: 43, Mismatches: 8, Indels: 3
0.80 0.15 0.06
Matches are distributed among these distances:
32 38 0.88
33 5 0.12
ACGTcount: A:0.45, C:0.18, G:0.12, T:0.26
Consensus pattern (33 bp):
GAAAATATTTTACAGCAAATCTACCAAACAGCA
Found at i:32481621 original size:20 final size:20
Alignment explanation
Indices: 32481596--32481635 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
32481586 AATATTTTCC
*
32481596 AGTAAATCATTTTACAGAAA
1 AGTAAAACATTTTACAGAAA
*
32481616 AGTAAAACATTTTCCAGAAA
1 AGTAAAACATTTTACAGAAA
32481636 TCATTTTACG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.50, C:0.12, G:0.10, T:0.28
Consensus pattern (20 bp):
AGTAAAACATTTTACAGAAA
Found at i:32481641 original size:34 final size:35
Alignment explanation
Indices: 32481584--32481650 Score: 109
Period size: 34 Copynumber: 1.9 Consensus size: 35
32481574 CAAACAGCAG
*
32481584 AAAATATTTTCCAGTAAATCATTTTACAGAAAAGT
1 AAAACATTTTCCAGTAAATCATTTTACAGAAAAGT
*
32481619 AAAACATTTTCCAG-AAATCATTTTACGGAAAA
1 AAAACATTTTCCAGTAAATCATTTTACAGAAAA
32481651 TATTTTACTG
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
34 17 0.57
35 13 0.43
ACGTcount: A:0.46, C:0.13, G:0.09, T:0.31
Consensus pattern (35 bp):
AAAACATTTTCCAGTAAATCATTTTACAGAAAAGT
Done.