Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr09 ID=Chr09-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 70713020
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 1142373 characters in sequence are not A, C, G, or T
File 98 of 226
Found at i:33655254 original size:17 final size:17
Alignment explanation
Indices: 33655232--33655271 Score: 55
Period size: 17 Copynumber: 2.4 Consensus size: 17
33655222 AGACAAATCA
33655232 TATTATTTTGAA-GGTGT
1 TATTATTTT-AAGGGTGT
33655249 TATTATTTTAAGGGTGT
1 TATTATTTTAAGGGTGT
*
33655266 TTTTAT
1 TATTAT
33655272 CATTATAAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
16 2 0.10
17 19 0.90
ACGTcount: A:0.23, C:0.00, G:0.20, T:0.57
Consensus pattern (17 bp):
TATTATTTTAAGGGTGT
Found at i:33657132 original size:20 final size:21
Alignment explanation
Indices: 33657109--33657162 Score: 56
Period size: 22 Copynumber: 2.5 Consensus size: 21
33657099 TTATTGATAA
33657109 ATATTATATATTA-TAAATAT
1 ATATTATATATTATTAAATAT
* * *
33657129 ATATTAAATTATTATTACATGT
1 ATATTATA-TATTATTAAATAT
33657151 ATTATTATATAT
1 A-TATTATATAT
33657163 CAACATTTTT
Statistics
Matches: 27, Mismatches: 4, Indels: 4
0.77 0.11 0.11
Matches are distributed among these distances:
20 7 0.26
21 5 0.19
22 9 0.33
23 6 0.22
ACGTcount: A:0.44, C:0.02, G:0.02, T:0.52
Consensus pattern (21 bp):
ATATTATATATTATTAAATAT
Found at i:33658671 original size:22 final size:22
Alignment explanation
Indices: 33658628--33658671 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
33658618 TTTGTTGTTG
* *
33658628 TTTGCTACCATTTTGATGTTAT
1 TTTGCTACCATTCTGATATTAT
*
33658650 TTTGCTACCATTCTGCTATTAT
1 TTTGCTACCATTCTGATATTAT
33658672 ATTACTACTA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.18, C:0.18, G:0.11, T:0.52
Consensus pattern (22 bp):
TTTGCTACCATTCTGATATTAT
Found at i:33659322 original size:24 final size:21
Alignment explanation
Indices: 33659280--33659332 Score: 61
Period size: 24 Copynumber: 2.4 Consensus size: 21
33659270 TAATTAGCAC
*
33659280 AAATATATTTTTAAAATTATA
1 AAATATATTTTTAAAATTAAA
33659301 AAATATATTATTTAATAGATTAAA
1 AAATATATT-TTTAA-A-ATTAAA
*
33659325 AAAAATAT
1 AAATATAT
33659333 AAAATCACAT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
21 9 0.33
22 5 0.19
23 1 0.04
24 12 0.44
ACGTcount: A:0.57, C:0.00, G:0.02, T:0.42
Consensus pattern (21 bp):
AAATATATTTTTAAAATTAAA
Found at i:33659695 original size:3 final size:3
Alignment explanation
Indices: 33659687--33659717 Score: 55
Period size: 3 Copynumber: 10.7 Consensus size: 3
33659677 TTCTTGTAAA
33659687 CTT CTT CTT CTT CTT CTT CTT CTT C-T CTT CT
1 CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CT
33659718 GGCCATTGAC
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
2 2 0.07
3 25 0.93
ACGTcount: A:0.00, C:0.35, G:0.00, T:0.65
Consensus pattern (3 bp):
CTT
Found at i:33662357 original size:13 final size:13
Alignment explanation
Indices: 33662339--33662373 Score: 52
Period size: 13 Copynumber: 2.7 Consensus size: 13
33662329 TAAGTTATTA
33662339 TATATTAATATAT
1 TATATTAATATAT
* *
33662352 TATATTCATATTT
1 TATATTAATATAT
33662365 TATATTAAT
1 TATATTAAT
33662374 CTGTGTTTTA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.40, C:0.03, G:0.00, T:0.57
Consensus pattern (13 bp):
TATATTAATATAT
Found at i:33664161 original size:2 final size:2
Alignment explanation
Indices: 33664154--33664188 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
33664144 GGAACTAATG
33664154 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
33664189 AAATTCAGCT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:33664637 original size:40 final size:41
Alignment explanation
Indices: 33664591--33664678 Score: 115
Period size: 40 Copynumber: 2.2 Consensus size: 41
33664581 ATTTTATCTA
* *
33664591 AATTTTTGTAAATATTTTGTAGTGTGAATTATAAGTTTTAT
1 AATTTTTGTAAATATTTTGTAGTATGAATTATAAGTCTTAT
* * * *
33664632 -ATTTTTGTGAATCTTTTGTATTATTAATTATAAGTCTTAT
1 AATTTTTGTAAATATTTTGTAGTATGAATTATAAGTCTTAT
33664672 AATTTTT
1 AATTTTT
33664679 TTTTCCATTT
Statistics
Matches: 40, Mismatches: 6, Indels: 2
0.83 0.12 0.04
Matches are distributed among these distances:
40 34 0.85
41 6 0.15
ACGTcount: A:0.30, C:0.02, G:0.11, T:0.57
Consensus pattern (41 bp):
AATTTTTGTAAATATTTTGTAGTATGAATTATAAGTCTTAT
Found at i:33664753 original size:36 final size:34
Alignment explanation
Indices: 33664662--33664793 Score: 113
Period size: 34 Copynumber: 3.8 Consensus size: 34
33664652 TTATTAATTA
* * **
33664662 TAAGTCTTATAATTTTTTTTTCCATTTTTTAGTTT
1 TAAGTCTTATTATTTTTGTTT-CATTTTAGAGTTT
****
33664697 TAAGTCTTATTAGCAGTGTTTC-TGCTGTTAGAGTTT
1 TAAGTCTTATTATTTTTGTTTCAT--T-TTAGAGTTT
**
33664733 TAAGTCTTATTATTTTTGTTTCATTTTTTAGTTT
1 TAAGTCTTATTATTTTTGTTTCATTTTAGAGTTT
* *
33664767 TAAGCCTTATCATTTTTGTTTCATTTT
1 TAAGTCTTATTATTTTTGTTTCATTTT
33664794 GGTGAATATT
Statistics
Matches: 77, Mismatches: 16, Indels: 9
0.75 0.16 0.09
Matches are distributed among these distances:
33 1 0.01
34 33 0.43
35 17 0.22
36 25 0.32
37 1 0.01
ACGTcount: A:0.19, C:0.10, G:0.11, T:0.60
Consensus pattern (34 bp):
TAAGTCTTATTATTTTTGTTTCATTTTAGAGTTT
Found at i:33664776 original size:34 final size:34
Alignment explanation
Indices: 33664728--33664793 Score: 114
Period size: 34 Copynumber: 1.9 Consensus size: 34
33664718 CTGCTGTTAG
* *
33664728 AGTTTTAAGTCTTATTATTTTTGTTTCATTTTTT
1 AGTTTTAAGCCTTATCATTTTTGTTTCATTTTTT
33664762 AGTTTTAAGCCTTATCATTTTTGTTTCATTTT
1 AGTTTTAAGCCTTATCATTTTTGTTTCATTTT
33664794 GGTGAATATT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
34 30 1.00
ACGTcount: A:0.18, C:0.09, G:0.09, T:0.64
Consensus pattern (34 bp):
AGTTTTAAGCCTTATCATTTTTGTTTCATTTTTT
Found at i:33666543 original size:137 final size:137
Alignment explanation
Indices: 33666297--33666573 Score: 545
Period size: 137 Copynumber: 2.0 Consensus size: 137
33666287 GCACTAAAGG
33666297 AAATGGTGACTTCTTCAGCATGGAAAAGGTCCACATATGCAAGAAAACCAACTGGACTAGAAATG
1 AAATGGTGACTTCTTCAGCATGGAAAAGGTCCACATATGCAAGAAAACCAACTGGACTAGAAATG
*
33666362 ACTGAAGTCATTAACTCAAGTGACTTAAGGAAAAAGGTTGTTGATGTCTTAAAGATCCAAGAACC
66 ACGGAAGTCATTAACTCAAGTGACTTAAGGAAAAAGGTTGTTGATGTCTTAAAGATCCAAGAACC
33666427 GTTGGTT
131 GTTGGTT
33666434 AAATGGTGACTTCTTCAGCATGGAAAAGGTCCACATATGCAAGAAAACCAACTGGACTAGAAATG
1 AAATGGTGACTTCTTCAGCATGGAAAAGGTCCACATATGCAAGAAAACCAACTGGACTAGAAATG
33666499 ACGGAAGTCATTAACTCAAGTGACTTAAGGAAAAAGGTTGTTGATGTCTTAAAGATCCAAGAACC
66 ACGGAAGTCATTAACTCAAGTGACTTAAGGAAAAAGGTTGTTGATGTCTTAAAGATCCAAGAACC
33666564 GTTGGTT
131 GTTGGTT
33666571 AAA
1 AAA
33666574 GTGTTAAAAA
Statistics
Matches: 139, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
137 139 1.00
ACGTcount: A:0.38, C:0.16, G:0.22, T:0.24
Consensus pattern (137 bp):
AAATGGTGACTTCTTCAGCATGGAAAAGGTCCACATATGCAAGAAAACCAACTGGACTAGAAATG
ACGGAAGTCATTAACTCAAGTGACTTAAGGAAAAAGGTTGTTGATGTCTTAAAGATCCAAGAACC
GTTGGTT
Found at i:33668462 original size:19 final size:20
Alignment explanation
Indices: 33668438--33668478 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
33668428 AAATTTAGGC
33668438 AAATATT-AA-ATGAAAATTG
1 AAATATTCAATATG-AAATTG
33668457 AAATATTCAATATGAAATTG
1 AAATATTCAATATGAAATTG
33668477 AA
1 AA
33668479 TTGTGTTGTA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
19 7 0.35
20 10 0.50
21 3 0.15
ACGTcount: A:0.56, C:0.02, G:0.10, T:0.32
Consensus pattern (20 bp):
AAATATTCAATATGAAATTG
Found at i:33670750 original size:20 final size:21
Alignment explanation
Indices: 33670725--33670764 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 21
33670715 TTTTCAATGA
33670725 ATTTTTATTTATA-AAATTAG
1 ATTTTTATTTATATAAATTAG
*
33670745 ATTTTTATTTTTATAAATTA
1 ATTTTTATTTATATAAATTA
33670765 AATAAAACAC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 12 0.67
21 6 0.33
ACGTcount: A:0.38, C:0.00, G:0.03, T:0.60
Consensus pattern (21 bp):
ATTTTTATTTATATAAATTAG
Found at i:33675153 original size:24 final size:24
Alignment explanation
Indices: 33675107--33675162 Score: 67
Period size: 24 Copynumber: 2.3 Consensus size: 24
33675097 GGCATTTTGC
* *
33675107 TGGCCTTTATGGCATACTGTGATC
1 TGGCCTTTATGGCATACTCTGATA
* * *
33675131 TTGCCTTTATGGCGTATTCTGATA
1 TGGCCTTTATGGCATACTCTGATA
33675155 TGGCCTTT
1 TGGCCTTT
33675163 GTGAAATTTT
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.14, C:0.20, G:0.23, T:0.43
Consensus pattern (24 bp):
TGGCCTTTATGGCATACTCTGATA
Found at i:33675731 original size:28 final size:28
Alignment explanation
Indices: 33675686--33675740 Score: 92
Period size: 28 Copynumber: 2.0 Consensus size: 28
33675676 TTATCAAGAT
33675686 CAGTAAGGGTATCCGCCAAAAGTATGAC
1 CAGTAAGGGTATCCGCCAAAAGTATGAC
* *
33675714 CAGTAAGGGTGTCTGCCAAAAGTATGA
1 CAGTAAGGGTATCCGCCAAAAGTATGA
33675741 TCAGAAAGTG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 25 1.00
ACGTcount: A:0.35, C:0.18, G:0.27, T:0.20
Consensus pattern (28 bp):
CAGTAAGGGTATCCGCCAAAAGTATGAC
Found at i:33681646 original size:70 final size:71
Alignment explanation
Indices: 33681511--33681650 Score: 241
Period size: 70 Copynumber: 2.0 Consensus size: 71
33681501 AATACTCGTG
33681511 AATATTGTAATATTATATAAAGTGAAATTTTTTATATGAAATTATTATTTTTTCATTATTATTTA
1 AATATTGTAATATTATATAAAGTGAAATTTTTTATATGAAATTATTATTTTTTCATTATTATTTA
33681576 TATGAA
66 TATGAA
33681582 AATATTGTAATATT-TGATAAAGTG-AA-TTTTTATATGAAATTATTATTATTTTCATTATTATT
1 AATATTGTAATATTAT-ATAAAGTGAAATTTTTTATATGAAATTATTATT-TTTTCATTATTATT
33681644 TATATGA
64 TATATGA
33681651 TTTTTTTTAT
Statistics
Matches: 67, Mismatches: 0, Indels: 5
0.93 0.00 0.07
Matches are distributed among these distances:
69 21 0.31
70 24 0.36
71 22 0.33
ACGTcount: A:0.39, C:0.01, G:0.08, T:0.52
Consensus pattern (71 bp):
AATATTGTAATATTATATAAAGTGAAATTTTTTATATGAAATTATTATTTTTTCATTATTATTTA
TATGAA
Found at i:33681725 original size:90 final size:90
Alignment explanation
Indices: 33681569--33681912 Score: 579
Period size: 90 Copynumber: 3.9 Consensus size: 90
33681559 TTTTTCATTA
* * *
33681569 TTATTTATATGAAAATATTGTAATATTTGATAAAG-T-GAATTTTTATATGAAATTATTATTATT
1 TTATTTTTATGAAAATAATGTAATATTTGATAAAGTTAAAATTTTTATATGAAATTATTATTATT
33681632 TTCATTATTATTTATATGATTTTTT
66 TTCATTATTATTTATATGATTTTTT
*
33681657 TTATTTTTATGAAAATAATGTAATATTTGATAAAGTTAAAATTTTTATATGCAATTATTATTATT
1 TTATTTTTATGAAAATAATGTAATATTTGATAAAGTTAAAATTTTTATATGAAATTATTATTATT
33681722 TTCATTATTATTTATATGATTTTTT
66 TTCATTATTATTTATATGATTTTTT
** *
33681747 TTATTTTTATGAAAATAAAATAATATTTGATAAAGTTAAAATTTTTATATGCAATTATTATTATT
1 TTATTTTTATGAAAATAATGTAATATTTGATAAAGTTAAAATTTTTATATGAAATTATTATTATT
33681812 TTCATTATTATTTATATGA--TTTT
66 TTCATTATTATTTATATGATTTTTT
* *
33681835 TTATTTTTATGAAAATAATGTAATATTTGATAAAGTTAAAATTTTTATATGAAATTTTTATTTTT
1 TTATTTTTATGAAAATAATGTAATATTTGATAAAGTTAAAATTTTTATATGAAATTATTATTATT
33681900 TTCATTATTATTT
66 TTCATTATTATTT
33681913 TTTATATAAA
Statistics
Matches: 243, Mismatches: 11, Indels: 4
0.94 0.04 0.02
Matches are distributed among these distances:
88 110 0.45
89 1 0.00
90 132 0.54
ACGTcount: A:0.36, C:0.02, G:0.07, T:0.55
Consensus pattern (90 bp):
TTATTTTTATGAAAATAATGTAATATTTGATAAAGTTAAAATTTTTATATGAAATTATTATTATT
TTCATTATTATTTATATGATTTTTT
Found at i:33681875 original size:178 final size:177
Alignment explanation
Indices: 33681569--33681912 Score: 573
Period size: 178 Copynumber: 1.9 Consensus size: 177
33681559 TTTTTCATTA
*** *
33681569 TTATTTATATGAAAATATTGTAATATTTGATAAAGTGAATTTTTATATGAAATTATTATTATTTT
1 TTATTTATATGAAAATAAAATAATATTTGATAAAGTAAATTTTTATATGAAATTATTATTATTTT
33681634 CATTATTATTTATATGATTTTTTTTATTTTTATGAAAATAATGTAATATTTGATAAAGTTAAAAT
66 CATTATTATTTATATGA-TTTTTTTATTTTTATGAAAATAATGTAATATTTGATAAAGTTAAAAT
*
33681699 TTTTATATGCAATTATTATTATTTTCATTATTATTTATATGATTTTTT
130 TTTTATATGAAATTATTATTATTTTCATTATTATTTATATGATTTTTT
* *
33681747 TTATTTTTATGAAAATAAAATAATATTTGATAAAGTTAAAATTTTTATATGCAATTATTATTATT
1 TTATTTATATGAAAATAAAATAATATTTGATAAAG-T-AAATTTTTATATGAAATTATTATTATT
33681812 TTCATTATTATTTATATGA-TTTTTTATTTTTATGAAAATAATGTAATATTTGATAAAGTTAAAA
64 TTCATTATTATTTATATGATTTTTTTATTTTTATGAAAATAATGTAATATTTGATAAAGTTAAAA
* *
33681876 TTTTTATATGAAATTTTTATTTTTTTCATTATTATTT
129 TTTTTATATGAAATTATTATTATTTTCATTATTATTT
33681913 TTTATATAAA
Statistics
Matches: 155, Mismatches: 9, Indels: 4
0.92 0.05 0.02
Matches are distributed among these distances:
178 110 0.71
179 1 0.01
180 44 0.28
ACGTcount: A:0.36, C:0.02, G:0.07, T:0.55
Consensus pattern (177 bp):
TTATTTATATGAAAATAAAATAATATTTGATAAAGTAAATTTTTATATGAAATTATTATTATTTT
CATTATTATTTATATGATTTTTTTATTTTTATGAAAATAATGTAATATTTGATAAAGTTAAAATT
TTTATATGAAATTATTATTATTTTCATTATTATTTATATGATTTTTT
Found at i:33683330 original size:41 final size:41
Alignment explanation
Indices: 33683293--33683468 Score: 230
Period size: 41 Copynumber: 4.3 Consensus size: 41
33683283 ACCGGCAATT
* * *
33683293 AGCCTGCTAGACGTAAAGTCCAAAATATTTCAACGGCATTA
1 AGCCTGCTAGACGTAAAGTCCGAAATATTTCACCGGCATCA
*
33683334 AGCCTGCTAGACGTAAA-TCTGAAATATTTCACCGGCATCA
1 AGCCTGCTAGACGTAAAGTCCGAAATATTTCACCGGCATCA
* * * *
33683374 AGCCTGCTAGGCATAAAGTTTC-AAATATTTCACCGACATCA
1 AGCCTGCTAGACGTAAAG-TCCGAAATATTTCACCGGCATCA
* * *
33683415 AGCTTGCTAGACCTAAAGTCTGAAATATTTCACCGGCATCA
1 AGCCTGCTAGACGTAAAGTCCGAAATATTTCACCGGCATCA
33683456 AGCCTGCTAGACG
1 AGCCTGCTAGACG
33683469 AGTCTGAATT
Statistics
Matches: 115, Mismatches: 17, Indels: 6
0.83 0.12 0.04
Matches are distributed among these distances:
40 35 0.30
41 79 0.69
42 1 0.01
ACGTcount: A:0.33, C:0.24, G:0.18, T:0.25
Consensus pattern (41 bp):
AGCCTGCTAGACGTAAAGTCCGAAATATTTCACCGGCATCA
Found at i:33683391 original size:81 final size:82
Alignment explanation
Indices: 33683293--33683467 Score: 255
Period size: 81 Copynumber: 2.1 Consensus size: 82
33683283 ACCGGCAATT
* * * *
33683293 AGCCTGCTAGACGTAAAG-TCCAAAATATTTCAACGGCATTAAGCCTGCTAGACGTAAA-TCTGA
1 AGCCTGCTAGACATAAAGTTCC-AAATATTTCAACGACATCAAGCCTGCTAGACCTAAAGTCTGA
33683356 AATATTTCACCGGCATCA
65 AATATTTCACCGGCATCA
* * * *
33683374 AGCCTGCTAGGCATAAAGTTTCAAATATTTCACCGACATCAAGCTTGCTAGACCTAAAGTCTGAA
1 AGCCTGCTAGACATAAAGTTCCAAATATTTCAACGACATCAAGCCTGCTAGACCTAAAGTCTGAA
33683439 ATATTTCACCGGCATCA
66 ATATTTCACCGGCATCA
33683456 AGCCTGCTAGAC
1 AGCCTGCTAGAC
33683468 GAGTCTGAAT
Statistics
Matches: 83, Mismatches: 9, Indels: 3
0.87 0.09 0.03
Matches are distributed among these distances:
81 47 0.57
82 36 0.43
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (82 bp):
AGCCTGCTAGACATAAAGTTCCAAATATTTCAACGACATCAAGCCTGCTAGACCTAAAGTCTGAA
ATATTTCACCGGCATCA
Found at i:33686775 original size:41 final size:41
Alignment explanation
Indices: 33686726--33686862 Score: 222
Period size: 41 Copynumber: 3.4 Consensus size: 41
33686716 TATGATTGGT
*
33686726 ACTAAGTGTGCGAAATTAAATAATGATGTTGAATAACGAGC
1 ACTAAGTGTGCGAAACTAAATAATGATGTTGAATAACGAGC
*
33686767 ACTAAGTGTGCGAAACTAAGTAATGATGTTGAATAACGAGC
1 ACTAAGTGTGCGAAACTAAATAATGATGTTGAATAACGAGC
* * *
33686808 ACTAAGTGTGCGAAACCAAATAATTATGTT-AATAACGGGC
1 ACTAAGTGTGCGAAACTAAATAATGATGTTGAATAACGAGC
33686848 ACTAAGTGTGCGAAA
1 ACTAAGTGTGCGAAA
33686863 TCAATATCAA
Statistics
Matches: 90, Mismatches: 6, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
40 24 0.27
41 66 0.73
ACGTcount: A:0.40, C:0.12, G:0.23, T:0.25
Consensus pattern (41 bp):
ACTAAGTGTGCGAAACTAAATAATGATGTTGAATAACGAGC
Found at i:33691966 original size:41 final size:41
Alignment explanation
Indices: 33691917--33692055 Score: 208
Period size: 41 Copynumber: 3.4 Consensus size: 41
33691907 TATATGATTG
*
33691917 GCACTAAGTGTGCGAAATTAAATAATGATGTTGAATAACGA
1 GCACTAAGTGTGCGAAACTAAATAATGATGTTGAATAACGA
* * *
33691958 GCACTAAGTGTGCAAAACTAAGTATTGATGTTGAATAACGA
1 GCACTAAGTGTGCGAAACTAAATAATGATGTTGAATAACGA
* * *
33691999 GCACTAAGTGTGCGAAACCAAATAATTATGTT-AATAACGG
1 GCACTAAGTGTGCGAAACTAAATAATGATGTTGAATAACGA
33692039 GCACTAAGTGTGCGAAA
1 GCACTAAGTGTGCGAAA
33692056 TCGAGATCAA
Statistics
Matches: 88, Mismatches: 10, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
40 24 0.27
41 64 0.73
ACGTcount: A:0.40, C:0.13, G:0.22, T:0.25
Consensus pattern (41 bp):
GCACTAAGTGTGCGAAACTAAATAATGATGTTGAATAACGA
Found at i:33696620 original size:2 final size:2
Alignment explanation
Indices: 33696615--33696642 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
33696605 CAGAAGTGTT
33696615 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
33696643 GGGGTGTTTT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:33703187 original size:11 final size:11
Alignment explanation
Indices: 33703173--33703220 Score: 52
Period size: 11 Copynumber: 4.8 Consensus size: 11
33703163 GAAAATGATG
33703173 GAAAAAGGAAA
1 GAAAAAGGAAA
33703184 GAAAAA-G--A
1 GAAAAAGGAAA
*
33703192 GAAGAA-GAAA
1 GAAAAAGGAAA
33703202 G-AAAAGGAAA
1 GAAAAAGGAAA
33703212 GAAAAAGGA
1 GAAAAAGGA
33703221 GAAACCAAAG
Statistics
Matches: 31, Mismatches: 2, Indels: 8
0.76 0.05 0.20
Matches are distributed among these distances:
8 7 0.23
9 3 0.10
10 8 0.26
11 13 0.42
ACGTcount: A:0.71, C:0.00, G:0.29, T:0.00
Consensus pattern (11 bp):
GAAAAAGGAAA
Found at i:33703230 original size:28 final size:29
Alignment explanation
Indices: 33703175--33703235 Score: 81
Period size: 28 Copynumber: 2.1 Consensus size: 29
33703165 AAATGATGGA
*
33703175 AAAAGGAAAGAAAAAGAGAAGAAGAAAG-
1 AAAAGGAAAGAAAAAGAGAAGAACAAAGC
*
33703203 AAAAGGAAAGAAAAAGGAGAA-ACCAAAGC
1 AAAAGGAAAGAAAAA-GAGAAGAACAAAGC
33703232 AAAA
1 AAAA
33703236 ACCCGCAAAG
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
28 20 0.69
29 9 0.31
ACGTcount: A:0.70, C:0.05, G:0.25, T:0.00
Consensus pattern (29 bp):
AAAAGGAAAGAAAAAGAGAAGAACAAAGC
Found at i:33705495 original size:44 final size:44
Alignment explanation
Indices: 33705435--33706407 Score: 540
Period size: 44 Copynumber: 21.8 Consensus size: 44
33705425 GAAGATGGTG
*
33705435 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCAAT
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCTAAT
* * * *
33705479 AATCCTATCTCCCTGAAGTTACAGTGGAGCGGATTAAAGTTACA-
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCTA-AT
* ** * * * * ** **
33705523 AGTCTTATCTCTTTGAAGTTACAGTAGAGCAGACTGAAGAGAGC
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCTAAT
* * * **
33705567 AAGTCTTATCTCCCTGAAGTTGCAGTGG-GACAGACTGAAGATGGT
1 AA-TCTTATCTCCCTGAAGTTGCAGTGGAG-CAGATTAAAGCTAAT
* * ** *
33705612 GAATCTTATCTCCCTAAAGTTGCAGTAGAAAAGATTAAAGCCAAT
1 -AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCTAAT
* * * * *
33705657 AATCCTATCTTCTTGAAGTTGCAGTGGAGCGGATTAAAGTTACA-
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCTA-AT
* * * * * * * *
33705701 AGTCTCATCTCCCTAAAATTGCAGTGGAGCAGACTGAAG-AAAGC
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCTAA-T
* * * * * * *
33705745 AAGTCTTATCCCCCTAAAGTTACAGTGGGGCAGACTAAAGGTGGCA-
1 AA-TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCT--AAT
* * * * *
33705791 AATCTTATCTCCCTGAAGTTGTAGTGGAACATATTAAAGCCAAC
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCTAAT
* ** *
33705835 AATCCTATCTCCCTGAAGTTGCAGTGGAGTGGATTAAAGTTACA-
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCTA-AT
* * * * * * *
33705879 AGTCTTATC-CCCATGAAGTTACAGTGGAGAAGACTGAAGATAGAG
1 AATCTTATCTCCC-TGAAGTTGCAGTGGAGCAGATTAAAGCTA-AT
* * * *
33705924 AATCTTATTTCCCTGAAGTTGCAGTGGAACAGATTGAAGCCAAT
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCTAAT
* * * *
33705968 AATCTTATCTCCCTAAAGTTGCAGTGGAACGGATTAAAGTTACA-
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCTA-AT
* * * * ** **
33706012 AGTCTTATCTCCCTAAAGTTACAGTGGAGCAGAATAAAAATAGCG
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCTA-AT
* * * * * *
33706057 AATCTTATTTCCCTAAAGTTGCAGTGGAACAAATTTAATCTATAAATT
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGC--T-AA-T
* * * * * * *
33706105 ACAGATCTTATCTCTCTGAATTTGCAGTAGAGAAGATCATA--TCA-
1 --A-ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCTAAT
* * * * * **
33706149 AACCTTATCTCCCTGAAGTTGCAGTGGAGTAGGTTGAAGATACC
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCTAAT
* *
33706193 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCTACT
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCTAAT
* * *
33706237 AATCCTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCTACT
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCTAAT
* * * *
33706281 AATCCTATCTCCCTGAAGTTGTAGAGGAGC-GAATTAAAAC-AAT
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAG-ATTAAAGCTAAT
* * *
33706324 GAAT-TCTATAC-CTCTGAAGTTGCAGTAGGTTG--GATTAAATCTACCAT
1 -AATCT-TAT-CTCCCTGAAGTTGCAGT-GG-AGCAGATTAAAGCTA--AT
33706371 AACAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGA
1 ---AA-TCTTATCTCCCTGAAGTTGCAGTGGAGCAGA
33706408 CTGAAGATAG
Statistics
Matches: 713, Mismatches: 170, Indels: 86
0.74 0.18 0.09
Matches are distributed among these distances:
41 28 0.04
42 2 0.00
43 9 0.01
44 411 0.58
45 194 0.27
46 9 0.01
47 4 0.01
48 3 0.00
49 5 0.01
50 21 0.03
51 27 0.04
ACGTcount: A:0.32, C:0.19, G:0.21, T:0.28
Consensus pattern (44 bp):
AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCTAAT
Found at i:33705733 original size:178 final size:178
Alignment explanation
Indices: 33705425--33706041 Score: 776
Period size: 178 Copynumber: 3.5 Consensus size: 178
33705415 ATGGATTGAA
* *
33705425 GAAGATGGTGAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCAATAATCCTATCTC
1 GAAGATGGTGAATCTTATCTCCCTAAAGTTGCAGTGGAACAGATTAAAGCCAATAATCCTATCTC
* ** *
33705490 CCTGAAGTTACAGTGGAGCGGATTAAAGTTACAAGTCTTATCTCTTTGAAGTTACAGTAGAGCAG
66 CCTGAAGTTGCAGTGGAGCGGATTAAAGTTACAAGTCTTATCTCCCTGAAGTTACAGTGGAGCAG
33705555 ACTGAAGAGAGCAAGTCTTATCTCCCTGAAGTTGCAGTGGGACAGACT
131 ACTGAAGAGAGCAAGTCTTATCTCCCTGAAGTTGCAGTGGGACAGACT
* * *
33705603 GAAGATGGTGAATCTTATCTCCCTAAAGTTGCAGTAGAAAAGATTAAAGCCAATAATCCTATCTT
1 GAAGATGGTGAATCTTATCTCCCTAAAGTTGCAGTGGAACAGATTAAAGCCAATAATCCTATCTC
* * * * *
33705668 CTTGAAGTTGCAGTGGAGCGGATTAAAGTTACAAGTCTCATCTCCCTAAAATTGCAGTGGAGCAG
66 CCTGAAGTTGCAGTGGAGCGGATTAAAGTTACAAGTCTTATCTCCCTGAAGTTACAGTGGAGCAG
* * * * *
33705733 ACTGAAGAAAGCAAGTCTTATCCCCCTAAAGTTACAGTGGGGCAGACT
131 ACTGAAGAGAGCAAGTCTTATCTCCCTGAAGTTGCAGTGGGACAGACT
* * ** * * * *
33705781 AAAGGTGGCAAATCTTATCTCCCTGAAGTTGTAGTGGAACATATTAAAGCCAACAATCCTATCTC
1 GAAGATGGTGAATCTTATCTCCCTAAAGTTGCAGTGGAACAGATTAAAGCCAATAATCCTATCTC
* *
33705846 CCTGAAGTTGCAGTGGAGTGGATTAAAGTTACAAGTCTTATC-CCCATGAAGTTACAGTGGAGAA
66 CCTGAAGTTGCAGTGGAGCGGATTAAAGTTACAAGTCTTATCTCCC-TGAAGTTACAGTGGAGCA
* * *
33705910 GACTGAAGATAGAG-AA-TCTTATTTCCCTGAAGTTGCAGTGGAACAGATT
130 GACTGAAG--AGAGCAAGTCTTATCTCCCTGAAGTTGCAGTGGGACAGACT
**** * ** * *
33705959 GAAGCCAAT-AATCTTATCTCCCTAAAGTTGCAGTGGAACGGATTAAAGTTACA-AGTCTTATCT
1 GAAGATGGTGAATCTTATCTCCCTAAAGTTGCAGTGGAACAGATTAAAGCCA-ATAATCCTATCT
* *
33706022 CCCTAAAGTTACAGTGGAGC
65 CCCTGAAGTTGCAGTGGAGC
33706042 AGAATAAAAA
Statistics
Matches: 373, Mismatches: 62, Indels: 9
0.84 0.14 0.02
Matches are distributed among these distances:
177 64 0.17
178 304 0.82
179 2 0.01
180 3 0.01
ACGTcount: A:0.32, C:0.19, G:0.22, T:0.27
Consensus pattern (178 bp):
GAAGATGGTGAATCTTATCTCCCTAAAGTTGCAGTGGAACAGATTAAAGCCAATAATCCTATCTC
CCTGAAGTTGCAGTGGAGCGGATTAAAGTTACAAGTCTTATCTCCCTGAAGTTACAGTGGAGCAG
ACTGAAGAGAGCAAGTCTTATCTCCCTGAAGTTGCAGTGGGACAGACT
Found at i:33705937 original size:133 final size:132
Alignment explanation
Indices: 33705670--33706087 Score: 482
Period size: 133 Copynumber: 3.1 Consensus size: 132
33705660 CCTATCTTCT
* * ** * * *
33705670 TGAAGTTGCAGTGGAGCGGATTAAAG-TTACAAGT-CTCATCTCCCTAAAATTGCAGTGGAGCAG
1 TGAAGTTGCAGTGGAACAGATTAAAGCCAACAA-TCCT-ATCTCCCTAAAGTTGCAGTGGAACGG
* * ** * * *
33705733 ACTGAAGAAAGCAAGTCTTATCCCCCTAAAGTTACAGTGGGGCAGACTAAAGGTGGCA-AATCTT
64 ATTAAAGTTA-CAAGTCTTAT-CCCCTAAAGTTACAGTGGAGCAGACTAAAGATAG-AGAATCTT
*
33705797 ATCTCCC
126 ATTTCCC
* * * **
33705804 TGAAGTTGTAGTGGAACATATTAAAGCCAACAATCCTATCTCCCTGAAGTTGCAGTGGAGTGGAT
1 TGAAGTTGCAGTGGAACAGATTAAAGCCAACAATCCTATCTCCCTAAAGTTGCAGTGGAACGGAT
* * *
33705869 TAAAGTTACAAGTCTTATCCCCATGAAGTTACAGTGGAGAAGACTGAAGATAGAGAATCTTATTT
66 TAAAGTTACAAGTCTTATCCCC-TAAAGTTACAGTGGAGCAGACTAAAGATAGAGAATCTTATTT
33705934 CCC
130 CCC
* * *
33705937 TGAAGTTGCAGTGGAACAGATTGAAGCCAATAATCTTATCTCCCTAAAGTTGCAGTGGAACGGAT
1 TGAAGTTGCAGTGGAACAGATTAAAGCCAACAATCCTATCTCCCTAAAGTTGCAGTGGAACGGAT
* * *
33706002 TAAAGTTACAAGTCTTATCTCCCTAAAGTTACAGTGGAGCAGAATAAAAATAGCGAATCTTATTT
66 TAAAGTTACAAGTCTTATC-CCCTAAAGTTACAGTGGAGCAGACTAAAGATAGAGAATCTTATTT
33706067 CCC
130 CCC
*
33706070 TAAAGTTGCAGTGGAACA
1 TGAAGTTGCAGTGGAACA
33706088 AATTTAATCT
Statistics
Matches: 243, Mismatches: 36, Indels: 11
0.84 0.12 0.04
Matches are distributed among these distances:
132 5 0.02
133 178 0.73
134 54 0.22
135 6 0.02
ACGTcount: A:0.33, C:0.18, G:0.22, T:0.26
Consensus pattern (132 bp):
TGAAGTTGCAGTGGAACAGATTAAAGCCAACAATCCTATCTCCCTAAAGTTGCAGTGGAACGGAT
TAAAGTTACAAGTCTTATCCCCTAAAGTTACAGTGGAGCAGACTAAAGATAGAGAATCTTATTTC
CC
Found at i:33706635 original size:45 final size:47
Alignment explanation
Indices: 33706581--33706697 Score: 121
Period size: 51 Copynumber: 2.4 Consensus size: 47
33706571 TCTCCCTGAA
* * * *
33706581 GTTGGAGTGGAGCAGACTGAA-AA-CAGTGAATCTTATTTCCCTGGC
1 GTTGCAGTGGAACAGACTAAAGAAGCAGCGAATCTTATTTCCCTGGC
*
33706626 GTTGCAGTGGAACAGATTAAAGTTGAAGGCAGCGAATCTTATTTCCCTGGC
1 GTTGCAGTGGAACAGACTAAA---GAA-GCAGCGAATCTTATTTCCCTGGC
* *
33706677 GTTGCAGTGGAATAGATTAAA
1 GTTGCAGTGGAACAGACTAAA
33706698 CCTACAAATT
Statistics
Matches: 60, Mismatches: 6, Indels: 6
0.83 0.08 0.08
Matches are distributed among these distances:
45 17 0.28
49 2 0.03
51 41 0.68
ACGTcount: A:0.29, C:0.15, G:0.28, T:0.27
Consensus pattern (47 bp):
GTTGCAGTGGAACAGACTAAAGAAGCAGCGAATCTTATTTCCCTGGC
Found at i:33706705 original size:194 final size:189
Alignment explanation
Indices: 33706377--33706787 Score: 538
Period size: 194 Copynumber: 2.1 Consensus size: 189
33706367 CCATAACAAG
* * *
33706377 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATAGCGAATCTTATTGGCGTTGCGGTGG
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAAACAGCGAATCTTATTGGCGTTGCAGTGG
* * *
33706442 AACAGATTAAAGCTGAAGACAACGAATCTTATTTCCCTGACGTTGCAGTGTAACATATTAAAGCT
66 AACAGATTAAAGCTGAAGACAACGAATCTTATTTCCCTGACGTTGCAGTGGAACAGATTAAACCT
* *
33706507 ACAAATTATGGC-GAACCTTATCTTCCTGAAGTTACAGTGGAGCAGATTGACGCCACC-A
131 ACAAATTATGGCAG-ACCTTATCTTCCTGAAGTTACAGTGAAGCAGATTGAAGCCACCAA
* * *
33706565 GCTTTATCTCCCTGAAGTTGGAGTGGAGCAGACTGAAAACAGTGAATCTTATTTCCCTGGCGTTG
1 TC-TTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAAACAGCGAATCTTA--T---TGGCGTTG
* * * * *
33706630 CAGTGGAACAGATTAAAGTTGAAGGCAGCGAATCTTATTTCCCTGGCGTTGCAGTGGAATAGATT
60 CAGTGGAACAGATTAAAGCTGAAGACAACGAATCTTATTTCCCTGACGTTGCAGTGGAACAGATT
* * * *
33706695 AAACCTACAAATTATGGCAGATCTTATCTTCCTGAAGTTGCAGTGAAGTAGATTGAAGCGACCAA
125 AAACCTACAAATTATGGCAGACCTTATCTTCCTGAAGTTACAGTGAAGCAGATTGAAGCCACCAA
* * *
33706760 TCCTATCTCCCTAAAGTTGTAGTGGAGC
1 TCTTATCTCCCTGAAGTTGCAGTGGAGC
33706788 GGATTAAAAC
Statistics
Matches: 191, Mismatches: 24, Indels: 10
0.85 0.11 0.04
Matches are distributed among these distances:
188 1 0.01
189 44 0.23
191 1 0.01
194 142 0.74
195 3 0.02
ACGTcount: A:0.29, C:0.19, G:0.24, T:0.28
Consensus pattern (189 bp):
TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAAACAGCGAATCTTATTGGCGTTGCAGTGG
AACAGATTAAAGCTGAAGACAACGAATCTTATTTCCCTGACGTTGCAGTGGAACAGATTAAACCT
ACAAATTATGGCAGACCTTATCTTCCTGAAGTTACAGTGAAGCAGATTGAAGCCACCAA
Found at i:33708220 original size:25 final size:25
Alignment explanation
Indices: 33708165--33708220 Score: 60
Period size: 25 Copynumber: 2.2 Consensus size: 25
33708155 CTTAGATTAG
* *
33708165 TTTATTATTGTTATTTGTCTGTTAA
1 TTTATTATTATTATTTATCTGTTAA
* *
33708190 TCTATTATTATTGTTTATCTG-TATA
1 TTTATTATTATTATTTATCTGTTA-A
33708215 TTTATT
1 TTTATT
33708221 TATATTCTTT
Statistics
Matches: 25, Mismatches: 5, Indels: 2
0.78 0.16 0.06
Matches are distributed among these distances:
24 2 0.08
25 23 0.92
ACGTcount: A:0.21, C:0.05, G:0.09, T:0.64
Consensus pattern (25 bp):
TTTATTATTATTATTTATCTGTTAA
Found at i:33709633 original size:20 final size:18
Alignment explanation
Indices: 33709608--33709650 Score: 50
Period size: 18 Copynumber: 2.3 Consensus size: 18
33709598 ACAAAATTTT
33709608 AAAATTCATAATATTGTATA
1 AAAATTCA-AA-ATTGTATA
* *
33709628 AAAATTGAAAATTTTATA
1 AAAATTCAAAATTGTATA
33709646 AAAAT
1 AAAAT
33709651 GAAAAAAGTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
18 12 0.57
19 2 0.10
20 7 0.33
ACGTcount: A:0.56, C:0.02, G:0.05, T:0.37
Consensus pattern (18 bp):
AAAATTCAAAATTGTATA
Found at i:33710066 original size:7 final size:7
Alignment explanation
Indices: 33710048--33710079 Score: 57
Period size: 7 Copynumber: 4.7 Consensus size: 7
33710038 ATTTTTTTCT
33710048 AATTTT-
1 AATTTTA
33710054 AATTTTA
1 AATTTTA
33710061 AATTTTA
1 AATTTTA
33710068 AATTTTA
1 AATTTTA
33710075 AATTT
1 AATTT
33710080 AATATTAAAT
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
6 6 0.24
7 19 0.76
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (7 bp):
AATTTTA
Found at i:33710066 original size:13 final size:13
Alignment explanation
Indices: 33710048--33710090 Score: 61
Period size: 13 Copynumber: 3.3 Consensus size: 13
33710038 ATTTTTTTCT
33710048 AATTTTAATTTTA
1 AATTTTAATTTTA
33710061 AATTTTAAATTTTA
1 AATTTT-AATTTTA
*
33710075 AA-TTTAATATTA
1 AATTTTAATTTTA
33710087 AATT
1 AATT
33710091 AAAATTAAAA
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
12 8 0.30
13 10 0.37
14 9 0.33
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (13 bp):
AATTTTAATTTTA
Found at i:33723881 original size:126 final size:126
Alignment explanation
Indices: 33723656--33724001 Score: 638
Period size: 126 Copynumber: 2.7 Consensus size: 126
33723646 AGTTGACGTC
* * * *
33723656 TCTGATCAAATAGTATAAAATCGCTTCTACCAAGATGCTATTTGAGAAGAAATTGTGAAATCGCG
1 TCTGAGCAAATAGTATAAAATCGTTTCTACGAGGATGCTATTTGAGAAGAAATTGTGAAATCGCG
* *
33723721 CCCTCGTGGACGCGATTTTGCTACAGTAGGTCATGTAAGAAATAATTTTTTTTCTGATTTT
66 CCCTCGTGGACGCGATTTTGCTACAGTAGGTCATGTAAGAAATAAATTTTTTTCTGATGTT
33723782 TCTGAGCAAATAGTATAAAATCGTTTCTACGAGGATGCTATTTGAGAAGAAATTGTGAAATCGCG
1 TCTGAGCAAATAGTATAAAATCGTTTCTACGAGGATGCTATTTGAGAAGAAATTGTGAAATCGCG
33723847 CCCTCGTGGACGCGATTTTGCTACAGTAGGTCATGTAAGAAATAAATTTTTTTCTGATGTT
66 CCCTCGTGGACGCGATTTTGCTACAGTAGGTCATGTAAGAAATAAATTTTTTTCTGATGTT
33723908 TCTGAGCAAATAGTATAAAATCGTTTCTACGAGGATGCTATTTGAGAAGAAATTGTGAAATCGCG
1 TCTGAGCAAATAGTATAAAATCGTTTCTACGAGGATGCTATTTGAGAAGAAATTGTGAAATCGCG
33723973 CCCTCGTGGACGCGATTTTGCTACAGTAG
66 CCCTCGTGGACGCGATTTTGCTACAGTAG
33724002 CAAGTTTGGG
Statistics
Matches: 214, Mismatches: 6, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
126 214 1.00
ACGTcount: A:0.30, C:0.16, G:0.22, T:0.33
Consensus pattern (126 bp):
TCTGAGCAAATAGTATAAAATCGTTTCTACGAGGATGCTATTTGAGAAGAAATTGTGAAATCGCG
CCCTCGTGGACGCGATTTTGCTACAGTAGGTCATGTAAGAAATAAATTTTTTTCTGATGTT
Found at i:33727143 original size:10 final size:10
Alignment explanation
Indices: 33727128--33727152 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
33727118 CAGATCTAAC
33727128 ATTATGTAAA
1 ATTATGTAAA
33727138 ATTATGTAAA
1 ATTATGTAAA
33727148 ATTAT
1 ATTAT
33727153 TAAGCCAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.48, C:0.00, G:0.08, T:0.44
Consensus pattern (10 bp):
ATTATGTAAA
Found at i:33727277 original size:56 final size:57
Alignment explanation
Indices: 33727135--33727279 Score: 172
Period size: 56 Copynumber: 2.6 Consensus size: 57
33727125 AACATTATGT
* *
33727135 AAAATTATGTAAAATTATTAAGCCAAAAAAATTTTCTTAATGGTTAGTAAAATTTATC
1 AAAA-TATGTAAAATTATTAAGCCAAAAAAATTGTCTTAATGGTTAGTAAAATGTATC
* * * * *
33727193 -AAATAATCTCAAATTATTAAGTCC--AAAAATTGTGTTAATGGTTATTAAAGTGT-TC
1 AAAAT-ATGTAAAATTATTAAG-CCAAAAAAATTGTCTTAATGGTTAGTAAAATGTATC
33727248 AAAATATGTAAAATTATTAAGCCAAAAAAATT
1 AAAATATGTAAAATTATTAAGCCAAAAAAATT
33727280 TAGGTTAGTT
Statistics
Matches: 73, Mismatches: 9, Indels: 12
0.78 0.10 0.13
Matches are distributed among these distances:
54 2 0.03
55 16 0.22
56 36 0.49
57 17 0.23
58 2 0.03
ACGTcount: A:0.47, C:0.08, G:0.10, T:0.36
Consensus pattern (57 bp):
AAAATATGTAAAATTATTAAGCCAAAAAAATTGTCTTAATGGTTAGTAAAATGTATC
Found at i:33727334 original size:29 final size:29
Alignment explanation
Indices: 33727276--33727659 Score: 555
Period size: 29 Copynumber: 13.3 Consensus size: 29
33727266 AAGCCAAAAA
33727276 AATTTAGGTTA-GTTTAGGGTTTTTAATT
1 AATTTAGGTTAGGTTTAGGGTTTTTAATT
* *
33727304 AATTTAGGTTAGGGTTAGGGTTTTTAGTT
1 AATTTAGGTTAGGTTTAGGGTTTTTAATT
33727333 AATTTAGGTTAGGTTTAGGGTTTTTAATT
1 AATTTAGGTTAGGTTTAGGGTTTTTAATT
*
33727362 AATTTAGGTTAGGGTTAGATTAGGGTTTTAAATT
1 AATTTAGGTTA-GG-T---TTAGGGTTTTTAATT
*
33727396 AATTTAGGTTA-G-TTAGGGTTTTTAGTT
1 AATTTAGGTTAGGTTTAGGGTTTTTAATT
*
33727423 AATTTAGGTTAGGTTTAGGGTTTTTAGTT
1 AATTTAGGTTAGGTTTAGGGTTTTTAATT
* *
33727452 AATTTAGGTTAGGTTTAGGGTTGTAAATT
1 AATTTAGGTTAGGTTTAGGGTTTTTAATT
* *
33727481 AATTTAGGTTA-GATTAGGGTTTTTAGTT
1 AATTTAGGTTAGGTTTAGGGTTTTTAATT
33727509 AATTTAGGTTAGGTTTAGGGTTTTTAATT
1 AATTTAGGTTAGGTTTAGGGTTTTTAATT
* *
33727538 AATTTAGGTTA-GATTAGGGTTTTTAGTT
1 AATTTAGGTTAGGTTTAGGGTTTTTAATT
33727566 AATTTAGGTTAGGTTTAGGGTTTTTAATT
1 AATTTAGGTTAGGTTTAGGGTTTTTAATT
* *
33727595 AATTTAGGTTA-GATTAGGGTTTTTAGTT
1 AATTTAGGTTAGGTTTAGGGTTTTTAATT
33727623 AATTTAGGTTAGGTTTAGGGTTTTTAATT
1 AATTTAGGTTAGGTTTAGGGTTTTTAATT
*
33727652 AAATTAGG
1 AATTTAGG
33727660 GTTTTTATTT
Statistics
Matches: 320, Mismatches: 25, Indels: 21
0.87 0.07 0.06
Matches are distributed among these distances:
27 24 0.08
28 88 0.28
29 179 0.56
30 2 0.01
31 1 0.00
32 1 0.00
34 25 0.08
ACGTcount: A:0.25, C:0.00, G:0.26, T:0.49
Consensus pattern (29 bp):
AATTTAGGTTAGGTTTAGGGTTTTTAATT
Found at i:33727402 original size:23 final size:23
Alignment explanation
Indices: 33727376--33727435 Score: 57
Period size: 27 Copynumber: 2.4 Consensus size: 23
33727366 TAGGTTAGGG
33727376 TTAGATTAGGGTTTTAAATTAAT
1 TTAGATTAGGGTTTTAAATTAAT
* *
33727399 TTAGGTTAGTTAGGGTTTTTAGTTAAT
1 TTA-G--A-TTAGGGTTTTAAATTAAT
*
33727426 TTAGGTTAGG
1 TTAGATTAGG
33727436 TTTAGGGTTT
Statistics
Matches: 30, Mismatches: 3, Indels: 8
0.73 0.07 0.20
Matches are distributed among these distances:
23 8 0.27
24 1 0.03
26 2 0.07
27 19 0.63
ACGTcount: A:0.27, C:0.00, G:0.25, T:0.48
Consensus pattern (23 bp):
TTAGATTAGGGTTTTAAATTAAT
Found at i:33727441 original size:11 final size:10
Alignment explanation
Indices: 33727398--33727641 Score: 61
Period size: 9 Copynumber: 25.6 Consensus size: 10
33727388 TTTAAATTAA
33727398 TTTAGGTTAG
1 TTTAGGTTAG
33727408 -TTAGGGTT--
1 TTTA-GGTTAG
*
33727416 TTTA-GTTAA
1 TTTAGGTTAG
33727425 TTTAGGTTAGG
1 TTTAGGTTA-G
33727436 TTTAGGGTT--
1 TTTA-GGTTAG
*
33727445 TTTA-GTTAA
1 TTTAGGTTAG
33727454 TTTAGGTTAGG
1 TTTAGGTTA-G
33727465 TTTAGG---G
1 TTTAGGTTAG
** *
33727472 TTGTAAATTAA
1 TT-TAGGTTAG
33727483 TTTAGGTTAG
1 TTTAGGTTAG
*
33727493 ATTAGGGTT--
1 TTTA-GGTTAG
*
33727502 TTTA-GTTAA
1 TTTAGGTTAG
33727511 TTTAGGTTAGG
1 TTTAGGTTA-G
33727522 TTTAGGGTT--
1 TTTA-GGTTAG
* *
33727531 TTTA-ATTAA
1 TTTAGGTTAG
33727540 TTTAGGTTAG
1 TTTAGGTTAG
*
33727550 ATTAGGGTT--
1 TTTA-GGTTAG
*
33727559 TTTA-GTTAA
1 TTTAGGTTAG
33727568 TTTAGGTTAGG
1 TTTAGGTTA-G
33727579 TTTAGGGTT--
1 TTTA-GGTTAG
* *
33727588 TTTA-ATTAA
1 TTTAGGTTAG
33727597 TTTAGGTTAG
1 TTTAGGTTAG
*
33727607 ATTAGGGTT--
1 TTTA-GGTTAG
*
33727616 TTTA-GTTAA
1 TTTAGGTTAG
33727625 TTTAGGTTAGG
1 TTTAGGTTA-G
33727636 TTTAGG
1 TTTAGG
33727642 GTTTTTAATT
Statistics
Matches: 173, Mismatches: 23, Indels: 75
0.64 0.08 0.28
Matches are distributed among these distances:
7 22 0.13
8 2 0.01
9 55 0.32
10 44 0.25
11 38 0.22
12 12 0.07
ACGTcount: A:0.24, C:0.00, G:0.26, T:0.50
Consensus pattern (10 bp):
TTTAGGTTAG
Found at i:33727515 original size:57 final size:57
Alignment explanation
Indices: 33727276--33727659 Score: 603
Period size: 57 Copynumber: 6.6 Consensus size: 57
33727266 AAGCCAAAAA
*
33727276 AATTTAGGTTA-GTTTAGGGTTTTTAATTAATTTAGGTTAGGGTTAGGGTTTTTAGTT
1 AATTTAGGTTAGGTTTAGGGTTTTTAATTAATTTAGGTTA-GATTAGGGTTTTTAGTT
* *
33727333 AATTTAGGTTAGGTTTAGGGTTTTTAATTAATTTAGGTTAGGGTTAGATTAGGGTTTTAAATT
1 AATTTAGGTTAGGTTTAGGGTTTTTAATTAA--T---TTA-GGTTAGATTAGGGTTTTTAGTT
* *
33727396 AATTTAGGTTA-G-TTAGGGTTTTTAGTTAATTTAGGTTAGGTTTAGGGTTTTTAGTT
1 AATTTAGGTTAGGTTTAGGGTTTTTAATTAATTTAGGTTA-GATTAGGGTTTTTAGTT
* *
33727452 AATTTAGGTTAGGTTTAGGGTTGTAAATTAATTTAGGTTAGATTAGGGTTTTTAGTT
1 AATTTAGGTTAGGTTTAGGGTTTTTAATTAATTTAGGTTAGATTAGGGTTTTTAGTT
33727509 AATTTAGGTTAGGTTTAGGGTTTTTAATTAATTTAGGTTAGATTAGGGTTTTTAGTT
1 AATTTAGGTTAGGTTTAGGGTTTTTAATTAATTTAGGTTAGATTAGGGTTTTTAGTT
33727566 AATTTAGGTTAGGTTTAGGGTTTTTAATTAATTTAGGTTAGATTAGGGTTTTTAGTT
1 AATTTAGGTTAGGTTTAGGGTTTTTAATTAATTTAGGTTAGATTAGGGTTTTTAGTT
*
33727623 AATTTAGGTTAGGTTTAGGGTTTTTAATTAAATTAGG
1 AATTTAGGTTAGGTTTAGGGTTTTTAATTAATTTAGG
33727660 GTTTTTATTT
Statistics
Matches: 303, Mismatches: 14, Indels: 20
0.90 0.04 0.06
Matches are distributed among these distances:
55 5 0.02
56 28 0.09
57 176 0.58
58 42 0.14
59 1 0.00
60 1 0.00
61 16 0.05
62 1 0.00
63 28 0.09
64 5 0.02
ACGTcount: A:0.25, C:0.00, G:0.26, T:0.49
Consensus pattern (57 bp):
AATTTAGGTTAGGTTTAGGGTTTTTAATTAATTTAGGTTAGATTAGGGTTTTTAGTT
Found at i:33727738 original size:26 final size:25
Alignment explanation
Indices: 33727707--33727755 Score: 71
Period size: 25 Copynumber: 1.9 Consensus size: 25
33727697 CTTAAAAAAT
33727707 TTCTATGCGTATTACATCAAATAAAC
1 TTCTAT-CGTATTACATCAAATAAAC
**
33727733 TTCTATTTTATTACATCAAATAA
1 TTCTATCGTATTACATCAAATAA
33727756 TAAATTTAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 15 0.71
26 6 0.29
ACGTcount: A:0.39, C:0.16, G:0.04, T:0.41
Consensus pattern (25 bp):
TTCTATCGTATTACATCAAATAAAC
Found at i:33727896 original size:24 final size:24
Alignment explanation
Indices: 33727869--33727921 Score: 70
Period size: 24 Copynumber: 2.2 Consensus size: 24
33727859 GGCGGTTGTT
*
33727869 CTTCCTCTGGTGCTGATTGTGGTA
1 CTTCCTCCGGTGCTGATTGTGGTA
* * *
33727893 CTTCCTCCGGTGGTGGTTGTGGTT
1 CTTCCTCCGGTGCTGATTGTGGTA
33727917 CTTCC
1 CTTCC
33727922 GATTCGGCAT
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.04, C:0.25, G:0.30, T:0.42
Consensus pattern (24 bp):
CTTCCTCCGGTGCTGATTGTGGTA
Found at i:33728873 original size:7 final size:7
Alignment explanation
Indices: 33728863--33728887 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
33728853 TTATATACAT
33728863 AATACTA
1 AATACTA
33728870 AATACTA
1 AATACTA
33728877 AATACTA
1 AATACTA
33728884 AATA
1 AATA
33728888 TCAATCGACT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.60, C:0.12, G:0.00, T:0.28
Consensus pattern (7 bp):
AATACTA
Found at i:33729985 original size:10 final size:10
Alignment explanation
Indices: 33729966--33730014 Score: 53
Period size: 10 Copynumber: 4.8 Consensus size: 10
33729956 GCCATTGATG
*
33729966 AAAATATAAA
1 AAAATTTAAA
33729976 AAAATTTAAA
1 AAAATTTAAA
* *
33729986 ATTATTTTAAA
1 A-AAATTTAAA
*
33729997 AAAATATAAA
1 AAAATTTAAA
33730007 AAAATTTA
1 AAAATTTA
33730015 TAATTATTTT
Statistics
Matches: 31, Mismatches: 7, Indels: 2
0.77 0.17 0.05
Matches are distributed among these distances:
10 23 0.74
11 8 0.26
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (10 bp):
AAAATTTAAA
Found at i:33730001 original size:31 final size:31
Alignment explanation
Indices: 33729966--33730030 Score: 121
Period size: 31 Copynumber: 2.1 Consensus size: 31
33729956 GCCATTGATG
33729966 AAAATATAAAAAAATTTAAAATTATTTTAAA
1 AAAATATAAAAAAATTTAAAATTATTTTAAA
*
33729997 AAAATATAAAAAAATTTATAATTATTTTAAA
1 AAAATATAAAAAAATTTAAAATTATTTTAAA
33730028 AAA
1 AAA
33730031 TGGATTTGAG
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 33 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (31 bp):
AAAATATAAAAAAATTTAAAATTATTTTAAA
Found at i:33730013 original size:21 final size:21
Alignment explanation
Indices: 33729972--33730013 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
33729962 GATGAAAATA
* **
33729972 TAAAAAAATTTAAAATTATTT
1 TAAAAAAATATAAAAAAATTT
33729993 TAAAAAAATATAAAAAAATTT
1 TAAAAAAATATAAAAAAATTT
33730014 ATAATTATTT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (21 bp):
TAAAAAAATATAAAAAAATTT
Found at i:33730066 original size:22 final size:22
Alignment explanation
Indices: 33730036--33730083 Score: 87
Period size: 22 Copynumber: 2.2 Consensus size: 22
33730026 AAAAATGGAT
*
33730036 TTGAGAGAATTTTGGAAGGAAA
1 TTGAAAGAATTTTGGAAGGAAA
33730058 TTGAAAGAATTTTGGAAGGAAA
1 TTGAAAGAATTTTGGAAGGAAA
33730080 TTGA
1 TTGA
33730084 GAGGATTAGA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.42, C:0.00, G:0.29, T:0.29
Consensus pattern (22 bp):
TTGAAAGAATTTTGGAAGGAAA
Found at i:33736907 original size:39 final size:39
Alignment explanation
Indices: 33736768--33736900 Score: 109
Period size: 38 Copynumber: 3.5 Consensus size: 39
33736758 ATAACTACAT
*
33736768 TTCGTTGGTATATCCAACTAGAGCTAGGCTCACTATTTA
1 TTCGTTGGTATATCCAACTAGAGCTGGGCTCACTATTTA
* ** * * *
33736807 TT-GTCGG-ATTATCTGACTAGTGCTGGGCGCA--A-ATA
1 TTCGTTGGTA-TATCCAACTAGAGCTGGGCTCACTATTTA
**
33736842 -TCGTTGGTATATCCAACTAGAATTGGGCTCACTATTTA
1 TTCGTTGGTATATCCAACTAGAGCTGGGCTCACTATTTA
*
33736880 TTCGTTGG-ATTATCCGACTAG
1 TTCGTTGGTA-TATCCAACTAG
33736901 CGTTGGGTGC
Statistics
Matches: 70, Mismatches: 16, Indels: 16
0.69 0.16 0.16
Matches are distributed among these distances:
34 1 0.01
35 22 0.31
36 2 0.03
37 2 0.03
38 24 0.34
39 19 0.27
ACGTcount: A:0.24, C:0.19, G:0.22, T:0.35
Consensus pattern (39 bp):
TTCGTTGGTATATCCAACTAGAGCTGGGCTCACTATTTA
Found at i:33737469 original size:24 final size:23
Alignment explanation
Indices: 33737424--33737471 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 23
33737414 ATAAGTTAAA
*
33737424 ATTTTGGTAAATGATGTATATAT
1 ATTTTGATAAATGATGTATATAT
* *
33737447 ATTTTGATATAATTATGTTTATAT
1 ATTTTGATA-AATGATGTATATAT
33737471 A
1 A
33737472 AGTAAATGTT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
23 8 0.38
24 13 0.62
ACGTcount: A:0.35, C:0.00, G:0.12, T:0.52
Consensus pattern (23 bp):
ATTTTGATAAATGATGTATATAT
Found at i:33738137 original size:54 final size:54
Alignment explanation
Indices: 33738035--33738139 Score: 147
Period size: 54 Copynumber: 1.9 Consensus size: 54
33738025 ATGTGGCTCT
* ** *
33738035 AGTCAGTGAGTTACACGGGCAGAGACACGAGCTGGGACATGGCTGTGTGTCTAA
1 AGTCAGAGAGTTACACGGGCAGAGACACGAGCTGGGACACAGCCGTGTGTCTAA
** *
33738089 AGTCAGAGAGTTACACGGGTTGAGACACGGGCTGGGACACAGCCGTGTGTC
1 AGTCAGAGAGTTACACGGGCAGAGACACGAGCTGGGACACAGCCGTGTGTC
33738140 CCAATTTCGA
Statistics
Matches: 44, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
54 44 1.00
ACGTcount: A:0.25, C:0.20, G:0.36, T:0.19
Consensus pattern (54 bp):
AGTCAGAGAGTTACACGGGCAGAGACACGAGCTGGGACACAGCCGTGTGTCTAA
Found at i:33742467 original size:77 final size:77
Alignment explanation
Indices: 33742378--33742532 Score: 238
Period size: 77 Copynumber: 2.0 Consensus size: 77
33742368 AGTCCAACTA
* * * * *
33742378 GGAGAGGGAGAGGAGCTAATAGGGTGTGTTTCCCCTCTTATGTATTATGATGGGGATTCGGGCCT
1 GGAGAGGGAGAGGAGCTAATAAGGTGTGCTTCCCCTCTTATGTATTATGATAGGGATTCAGACCT
33742443 CTTATTGTATTG
66 CTTATTGTATTG
* * *
33742455 GGAGAGGGAGAGGGGCTAATAAGGTTTGCTTCCCCTCTTATGTATTATGATATGGATTCAGACCT
1 GGAGAGGGAGAGGAGCTAATAAGGTGTGCTTCCCCTCTTATGTATTATGATAGGGATTCAGACCT
33742520 CTTATTGTATTG
66 CTTATTGTATTG
33742532 G
1 G
33742533 ACCCAATTAT
Statistics
Matches: 70, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
77 70 1.00
ACGTcount: A:0.21, C:0.14, G:0.31, T:0.34
Consensus pattern (77 bp):
GGAGAGGGAGAGGAGCTAATAAGGTGTGCTTCCCCTCTTATGTATTATGATAGGGATTCAGACCT
CTTATTGTATTG
Found at i:33757828 original size:68 final size:68
Alignment explanation
Indices: 33757712--33757902 Score: 240
Period size: 68 Copynumber: 2.8 Consensus size: 68
33757702 CGACTTAATT
* * * *
33757712 TGTTTCCATAGCCGAGCTATGGTCTTACATAATGTAACCCAATGTTTATTGTCCTAGCAGACTCC
1 TGTTACCATAGCCGAGCTATGGTCTTACACAATGTAACCCTATGTTTATTATCCTAGCAGACTCC
33757777 ATA
66 ATA
* * * * * * *
33757780 TGTTGCTATAGCCGAACTATGGTCTTATACAATGTAACCCTATGTTTATTATCTTGGCGGACTCC
1 TGTTACCATAGCCGAGCTATGGTCTTACACAATGTAACCCTATGTTTATTATCCTAGCAGACTCC
33757845 ATA
66 ATA
** *
33757848 TGTTACCATAGTAGAGCTATGGTCTTACACAATGTAA-CCTCATGTTTATTTTCCT
1 TGTTACCATAGCCGAGCTATGGTCTTACACAATGTAACCCT-ATGTTTATTATCCT
33757903 GGAGGACTCT
Statistics
Matches: 104, Mismatches: 18, Indels: 2
0.84 0.15 0.02
Matches are distributed among these distances:
67 3 0.03
68 101 0.97
ACGTcount: A:0.26, C:0.21, G:0.16, T:0.37
Consensus pattern (68 bp):
TGTTACCATAGCCGAGCTATGGTCTTACACAATGTAACCCTATGTTTATTATCCTAGCAGACTCC
ATA
Found at i:33762521 original size:19 final size:19
Alignment explanation
Indices: 33762483--33762531 Score: 62
Period size: 19 Copynumber: 2.5 Consensus size: 19
33762473 AAAAATATAA
* *
33762483 ATTTTGAAATTTTTATAAAT
1 ATTTTG-AATTTTAAAAAAT
33762503 ATTTTGAATTTTAAAAAAT
1 ATTTTGAATTTTAAAAAAT
*
33762522 GTTTTGAATT
1 ATTTTGAATT
33762532 ATTGTAATTT
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
19 20 0.77
20 6 0.23
ACGTcount: A:0.39, C:0.00, G:0.08, T:0.53
Consensus pattern (19 bp):
ATTTTGAATTTTAAAAAAT
Found at i:33767026 original size:11 final size:11
Alignment explanation
Indices: 33767010--33767045 Score: 56
Period size: 11 Copynumber: 3.4 Consensus size: 11
33767000 TTTCTCAGTG
33767010 AAAAAATTTAT
1 AAAAAATTTAT
33767021 AAAAAA-TTAT
1 AAAAAATTTAT
*
33767031 AAAAAATATAT
1 AAAAAATTTAT
33767042 AAAA
1 AAAA
33767046 TTTTCAAAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
10 10 0.43
11 13 0.57
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (11 bp):
AAAAAATTTAT
Found at i:33772058 original size:50 final size:52
Alignment explanation
Indices: 33771951--33772075 Score: 164
Period size: 50 Copynumber: 2.4 Consensus size: 52
33771941 TTTTTCCAAC
* * * *
33771951 TCTTACATGATATGGTCTTCTGCCTATATGATTCCATAACCCACCAGTTACGG
1 TCTTACACGATATGGTCTTCTTCCTACATGA-TCCATAACCCACCAATTACGG
* *
33772004 TCTTACACAATATGGTCTTCTTCCTACATG-T-CATAACCCACCAATTATGG
1 TCTTACACGATATGGTCTTCTTCCTACATGATCCATAACCCACCAATTACGG
*
33772054 TCTTACACGATATGGTATTCTT
1 TCTTACACGATATGGTCTTCTT
33772076 TCAGTGCCAT
Statistics
Matches: 64, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
50 37 0.58
51 1 0.02
53 26 0.41
ACGTcount: A:0.26, C:0.26, G:0.13, T:0.36
Consensus pattern (52 bp):
TCTTACACGATATGGTCTTCTTCCTACATGATCCATAACCCACCAATTACGG
Found at i:33784085 original size:56 final size:56
Alignment explanation
Indices: 33783999--33784110 Score: 224
Period size: 56 Copynumber: 2.0 Consensus size: 56
33783989 TTAGCGAAAG
33783999 AACAAATTTTTTCATCCCATCTACTATGCGAGTCGGACTCTGACAGGAGCTCAACT
1 AACAAATTTTTTCATCCCATCTACTATGCGAGTCGGACTCTGACAGGAGCTCAACT
33784055 AACAAATTTTTTCATCCCATCTACTATGCGAGTCGGACTCTGACAGGAGCTCAACT
1 AACAAATTTTTTCATCCCATCTACTATGCGAGTCGGACTCTGACAGGAGCTCAACT
33784111 GAATTACATG
Statistics
Matches: 56, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
56 56 1.00
ACGTcount: A:0.29, C:0.27, G:0.16, T:0.29
Consensus pattern (56 bp):
AACAAATTTTTTCATCCCATCTACTATGCGAGTCGGACTCTGACAGGAGCTCAACT
Found at i:33785963 original size:26 final size:26
Alignment explanation
Indices: 33785928--33785979 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
33785918 AATGTGAAAG
*
33785928 GGGGTTGCTATGTGCTGATTCCCCGA
1 GGGGTTGCTAAGTGCTGATTCCCCGA
33785954 GGGGTTGCTAAGTGCTGATTCCCCGA
1 GGGGTTGCTAAGTGCTGATTCCCCGA
33785980 TTTCATTGGT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.13, C:0.23, G:0.35, T:0.29
Consensus pattern (26 bp):
GGGGTTGCTAAGTGCTGATTCCCCGA
Found at i:33786035 original size:104 final size:103
Alignment explanation
Indices: 33785850--33786219 Score: 591
Period size: 103 Copynumber: 3.6 Consensus size: 103
33785840 TGTATATAAA
** * * *
33785850 AGGGGTTGCTGTGTGCTGATTCCCCGATTTATGGGTGGTGCTATGTGCG-TGATCCACCATATCT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGAT-ATCCACCATATCT
*
33785914 TTGAAATGTGAAAGGGGGTTGCTATGTGCTGATT-CCCCG
65 TTGAAATG-AAAAGGGGGTTGCTATGTGCTGATTCCCCCG
33785953 AGGGGTTGCTAAGTGCTGATTCCCCGATTTCATTGGTGGTGCTAAGTGCGATATCCACCATATCT
1 AGGGGTTGCTAAGTGCTGATTCCCCGA-TTCATTGGTGGTGCTAAGTGCGATATCCACCATATCT
*
33786018 TTCAAATGAAAAGGGGGGTTGCTATGTGCTGATTCCCCCG
65 TTGAAATGAAAA-GGGGGTTGCTATGTGCTGATTCCCCCG
33786058 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCATATCTT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCATATCTT
*
33786123 TGAAATAAAAAGGGGGTTGCTATGTGCTGATTCCCCCG
66 TGAAATGAAAAGGGGGTTGCTATGTGCTGATTCCCCCG
* **
33786161 AGGGGTTGCTAAGTGCTGATTCCCCGATTCAGTGGTGGTGCTAAGTGCGGGATCCACCA
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCA
33786220 ATAACGGCTA
Statistics
Matches: 251, Mismatches: 12, Indels: 8
0.93 0.04 0.03
Matches are distributed among these distances:
103 111 0.44
104 107 0.43
105 33 0.13
ACGTcount: A:0.20, C:0.20, G:0.30, T:0.30
Consensus pattern (103 bp):
AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCATATCTT
TGAAATGAAAAGGGGGTTGCTATGTGCTGATTCCCCCG
Found at i:33792519 original size:16 final size:17
Alignment explanation
Indices: 33792490--33792523 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
33792480 TAATTCATAA
*
33792490 TATAACTAATTTTAATT
1 TATAACCAATTTTAATT
33792507 TATAACCAA-TTTAATT
1 TATAACCAATTTTAATT
33792523 T
1 T
33792524 GGGTTAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 8 0.50
17 8 0.50
ACGTcount: A:0.41, C:0.09, G:0.00, T:0.50
Consensus pattern (17 bp):
TATAACCAATTTTAATT
Found at i:33797539 original size:23 final size:25
Alignment explanation
Indices: 33797495--33797548 Score: 69
Period size: 23 Copynumber: 2.2 Consensus size: 25
33797485 TAGGATCACA
*
33797495 ATATAACGGGACGCTCCGAAG-ACC
1 ATATAACGGGAAGCTCCGAAGAACC
33797519 -TATAACGGGAAGCT-CGCAAGAACC
1 ATATAACGGGAAGCTCCG-AAGAACC
33797543 ATATAA
1 ATATAA
33797549 TGAAAAGCTC
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
22 2 0.08
23 16 0.62
24 3 0.12
25 5 0.19
ACGTcount: A:0.39, C:0.24, G:0.22, T:0.15
Consensus pattern (25 bp):
ATATAACGGGAAGCTCCGAAGAACC
Found at i:33803629 original size:13 final size:13
Alignment explanation
Indices: 33803611--33803635 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
33803601 GTGCACGAGA
33803611 CACACGACCAAAC
1 CACACGACCAAAC
33803624 CACACGACCAAA
1 CACACGACCAAA
33803636 AATTAGATGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.44, G:0.08, T:0.00
Consensus pattern (13 bp):
CACACGACCAAAC
Found at i:33808939 original size:19 final size:17
Alignment explanation
Indices: 33808916--33808974 Score: 57
Period size: 19 Copynumber: 3.2 Consensus size: 17
33808906 TAAAAATGAA
33808916 AAAAAATATTAATAAATT
1 AAAAAATATTAA-AAATT
33808934 CCAAAAACAT-TTAAAAATT
1 --AAAAA-ATATTAAAAATT
33808953 AAAAAATTATTAAAAATAT
1 AAAAAA-TATTAAAAAT-T
33808972 AAA
1 AAA
33808975 TTTTTTAAAA
Statistics
Matches: 35, Mismatches: 0, Indels: 9
0.80 0.00 0.20
Matches are distributed among these distances:
16 1 0.03
17 6 0.17
18 8 0.23
19 9 0.26
20 9 0.26
21 2 0.06
ACGTcount: A:0.66, C:0.05, G:0.00, T:0.29
Consensus pattern (17 bp):
AAAAAATATTAAAAATT
Found at i:33808982 original size:17 final size:18
Alignment explanation
Indices: 33808943--33808985 Score: 52
Period size: 17 Copynumber: 2.4 Consensus size: 18
33808933 TCCAAAAACA
33808943 TTTAAAAATTAAAAAATT
1 TTTAAAAATTAAAAAATT
* * *
33808961 ATTAAAAA-TATAAATTT
1 TTTAAAAATTAAAAAATT
33808978 TTTAAAAA
1 TTTAAAAA
33808986 AAATAACAAT
Statistics
Matches: 21, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
17 14 0.67
18 7 0.33
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (18 bp):
TTTAAAAATTAAAAAATT
Found at i:33811822 original size:6 final size:6
Alignment explanation
Indices: 33811811--33811845 Score: 52
Period size: 6 Copynumber: 5.8 Consensus size: 6
33811801 TAGGTTTCCA
* *
33811811 AAATGG AAATGG AAATGG AAATAG AAATAG AAATG
1 AAATGG AAATGG AAATGG AAATGG AAATGG AAATG
33811846 ATTCATTTGC
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
6 27 1.00
ACGTcount: A:0.57, C:0.00, G:0.26, T:0.17
Consensus pattern (6 bp):
AAATGG
Found at i:33819805 original size:20 final size:22
Alignment explanation
Indices: 33819782--33819827 Score: 53
Period size: 20 Copynumber: 2.2 Consensus size: 22
33819772 GGTGTGTTAA
* *
33819782 GACATCCGA-GGCTG-TGTCGC
1 GACATCCAAGGGCTGATGTCAC
33819802 GACA-CCAAGGGCTGATGTCAC
1 GACATCCAAGGGCTGATGTCAC
33819823 GACAT
1 GACAT
33819828 TTCTCTCTTT
Statistics
Matches: 21, Mismatches: 2, Indels: 4
0.78 0.07 0.15
Matches are distributed among these distances:
19 3 0.14
20 9 0.43
21 9 0.43
ACGTcount: A:0.24, C:0.28, G:0.30, T:0.17
Consensus pattern (22 bp):
GACATCCAAGGGCTGATGTCAC
Found at i:33820998 original size:3 final size:3
Alignment explanation
Indices: 33820990--33821028 Score: 78
Period size: 3 Copynumber: 13.0 Consensus size: 3
33820980 TAATCTTAAT
33820990 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA
1 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA
33821029 TGAGGGAATG
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 36 1.00
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (3 bp):
GAA
Found at i:33829731 original size:47 final size:47
Alignment explanation
Indices: 33829678--33829822 Score: 124
Period size: 47 Copynumber: 3.1 Consensus size: 47
33829668 TCATATAAGA
* *
33829678 ATATTTATTATTAAAAATTTTATGAAATTATATGTCATTATTAAATT
1 ATATTTATTATTAAAAATTTTATGAAATTATATATAATTATTAAATT
* * *
33829725 ATATTTA--A-TAATAATTATT-TTAAATTATACA-AATTCATATAAGA--
1 ATATTTATTATTAAAAATT-TTATGAAATTATATATAATT-AT-TAA-ATT
* * * *
33829769 AAATTTATTATCAAGAATTTTATGAAATTATATATTATTATTAAATT
1 ATATTTATTATTAAAAATTTTATGAAATTATATATAATTATTAAATT
33829816 ATATTTA
1 ATATTTA
33829823 ATAATAATTA
Statistics
Matches: 75, Mismatches: 12, Indels: 22
0.69 0.11 0.20
Matches are distributed among these distances:
43 3 0.04
44 24 0.32
45 7 0.09
46 7 0.09
47 31 0.41
48 3 0.04
ACGTcount: A:0.46, C:0.03, G:0.03, T:0.48
Consensus pattern (47 bp):
ATATTTATTATTAAAAATTTTATGAAATTATATATAATTATTAAATT
Found at i:33829767 original size:91 final size:91
Alignment explanation
Indices: 33829664--33829899 Score: 391
Period size: 91 Copynumber: 2.6 Consensus size: 91
33829654 TGATTTTAGT
* * *
33829664 AAATTCATATAAGAATATTTATTATTAAAAATTTTATGAAATTATATGTCATTATTAAATTATAT
1 AAATTCATATAAGAAAATTTATTATTAAGAATTTTATGAAATTATATATCATTATTAAATTATAT
33829729 TTAATAATAATTATTTTAAATTATAC
66 TTAATAATAATTATTTTAAATTATAC
* *
33829755 AAATTCATATAAGAAAATTTATTATCAAGAATTTTATGAAATTATATATTATTATTAAATTATAT
1 AAATTCATATAAGAAAATTTATTATTAAGAATTTTATGAAATTATATATCATTATTAAATTATAT
33829820 TTAATAATAATTATTTTAAATTATAC
66 TTAATAATAATTATTTTAAATTATAC
* * * *
33829846 AAATTCATATAAGAAAAATTATTAGTAAGAGTTTTATGAAATTATATATTATTA
1 AAATTCATATAAGAAAATTTATTATTAAGAATTTTATGAAATTATATATCATTA
33829900 ATNNNNNNNN
Statistics
Matches: 136, Mismatches: 9, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
91 136 1.00
ACGTcount: A:0.47, C:0.03, G:0.05, T:0.45
Consensus pattern (91 bp):
AAATTCATATAAGAAAATTTATTATTAAGAATTTTATGAAATTATATATCATTATTAAATTATAT
TTAATAATAATTATTTTAAATTATAC
Found at i:33829836 original size:47 final size:47
Alignment explanation
Indices: 33829694--33829837 Score: 131
Period size: 47 Copynumber: 3.1 Consensus size: 47
33829684 ATTATTAAAA
* *
33829694 ATTTTATGAAATTATATGTCATTATTAAATTATATTTAATAATAATT
1 ATTTTATGAAATTATATATAATTATTAAATTATATTTAATAATAATT
* * * **
33829741 A-TTT-T-AAATTATACA-AATTCATATAAGA--AAATTT-ATTATCAAGA
1 ATTTTATGAAATTATATATAATT-AT-TAA-ATTATATTTAATAAT-AATT
*
33829785 ATTTTATGAAATTATATATTATTATTAAATTATATTTAATAATAATT
1 ATTTTATGAAATTATATATAATTATTAAATTATATTTAATAATAATT
33829832 ATTTTA
1 ATTTTA
33829838 AATTATACAA
Statistics
Matches: 73, Mismatches: 13, Indels: 22
0.68 0.12 0.20
Matches are distributed among these distances:
43 7 0.10
44 18 0.25
45 8 0.11
46 8 0.11
47 25 0.34
48 7 0.10
ACGTcount: A:0.45, C:0.03, G:0.03, T:0.49
Consensus pattern (47 bp):
ATTTTATGAAATTATATATAATTATTAAATTATATTTAATAATAATT
Found at i:33830387 original size:16 final size:16
Alignment explanation
Indices: 33830368--33830399 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
33830358 ACCTATTAAC
33830368 CCTCCATTCCATTACA
1 CCTCCATTCCATTACA
*
33830384 CCTCTATTCCATTACA
1 CCTCCATTCCATTACA
33830400 GCGAACCAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.25, C:0.41, G:0.00, T:0.34
Consensus pattern (16 bp):
CCTCCATTCCATTACA
Found at i:33831849 original size:28 final size:28
Alignment explanation
Indices: 33831809--33831883 Score: 132
Period size: 28 Copynumber: 2.7 Consensus size: 28
33831799 CCATACATCC
*
33831809 CAACTCAAGAACGATTATTTTATTGAAT
1 CAACTCAAGAACGATTATTTTATGGAAT
33831837 CAACTCAAGAACGATTATTTTATGGAAT
1 CAACTCAAGAACGATTATTTTATGGAAT
*
33831865 CAACTCAAGAACAATTATT
1 CAACTCAAGAACGATTATT
33831884 AGATGTTCTA
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 45 1.00
ACGTcount: A:0.41, C:0.16, G:0.11, T:0.32
Consensus pattern (28 bp):
CAACTCAAGAACGATTATTTTATGGAAT
Found at i:33836581 original size:5 final size:5
Alignment explanation
Indices: 33836567--33836599 Score: 59
Period size: 5 Copynumber: 6.8 Consensus size: 5
33836557 ATGGAGACTT
33836567 AATT- AATTA AATTA AATTA AATTA AATTA AATT
1 AATTA AATTA AATTA AATTA AATTA AATTA AATT
33836600 CGAGATTACT
Statistics
Matches: 28, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
4 4 0.14
5 24 0.86
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (5 bp):
AATTA
Found at i:33837150 original size:17 final size:15
Alignment explanation
Indices: 33837121--33837162 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
33837111 AAATAATAAA
33837121 ATATATTTTTATTTT
1 ATATATTTTTATTTT
* *
33837136 ATATATTGTTATATT
1 ATATATTTTTATTTT
33837151 -T-TATTTTTATTT
1 ATATATTTTTATTT
33837163 AAAAAATTAT
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
13 9 0.39
14 1 0.04
15 13 0.57
ACGTcount: A:0.26, C:0.00, G:0.02, T:0.71
Consensus pattern (15 bp):
ATATATTTTTATTTT
Found at i:33846753 original size:27 final size:27
Alignment explanation
Indices: 33846715--33846766 Score: 86
Period size: 27 Copynumber: 1.9 Consensus size: 27
33846705 TGTGGAGCTC
*
33846715 GATGCAATCACTTCATTAATAGCCCTT
1 GATGAAATCACTTCATTAATAGCCCTT
*
33846742 GATGAAATCACTTCGTTAATAGCCC
1 GATGAAATCACTTCATTAATAGCCC
33846767 AGGTATCATC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.31, C:0.25, G:0.13, T:0.31
Consensus pattern (27 bp):
GATGAAATCACTTCATTAATAGCCCTT
Found at i:33852584 original size:98 final size:98
Alignment explanation
Indices: 33852415--33852613 Score: 362
Period size: 98 Copynumber: 2.0 Consensus size: 98
33852405 CCCTCTCTCA
33852415 TCACCGCGCCATGCTAGCGTATGAATGTCTTTGTCCAGGCCAATGAAGATGTTATTCCAAATGAA
1 TCACCGCGCCATGCTAGCGTATGAATGTCTTTGTCCAGGCCAATGAAGATGTTATTCCAAATGAA
*
33852480 GGGGCCATTATGAAGCAAATTGTTGCAAAGTTT
66 GGGGCCACTATGAAGCAAATTGTTGCAAAGTTT
*
33852513 TCACCGCGCTATGCTAGCGTATGAATGTCTTTGTCCAGGCCAATGAAGATGTTATTCCAAATGAA
1 TCACCGCGCCATGCTAGCGTATGAATGTCTTTGTCCAGGCCAATGAAGATGTTATTCCAAATGAA
* *
33852578 TGGGCCACTATGAAGCAAATTGTTGCATAGTTT
66 GGGGCCACTATGAAGCAAATTGTTGCAAAGTTT
33852611 TCA
1 TCA
33852614 GAGGAGGATT
Statistics
Matches: 97, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
98 97 1.00
ACGTcount: A:0.28, C:0.20, G:0.23, T:0.30
Consensus pattern (98 bp):
TCACCGCGCCATGCTAGCGTATGAATGTCTTTGTCCAGGCCAATGAAGATGTTATTCCAAATGAA
GGGGCCACTATGAAGCAAATTGTTGCAAAGTTT
Found at i:33864634 original size:20 final size:23
Alignment explanation
Indices: 33864596--33864660 Score: 91
Period size: 23 Copynumber: 2.9 Consensus size: 23
33864586 GGTGTCTCCC
33864596 TCTCTTCTCATTTCTTTTCTC-TT
1 TCTCTTCT-ATTTCTTTTCTCATT
33864619 T-TCTTCT-TTTCTTTTCTCATT
1 TCTCTTCTATTTCTTTTCTCATT
*
33864640 TCTCTTTTATTTCTTTTCTCA
1 TCTCTTCTATTTCTTTTCTCA
33864661 ATCGTTGTAT
Statistics
Matches: 38, Mismatches: 1, Indels: 6
0.84 0.02 0.13
Matches are distributed among these distances:
20 11 0.29
21 3 0.08
22 11 0.29
23 13 0.34
ACGTcount: A:0.06, C:0.26, G:0.00, T:0.68
Consensus pattern (23 bp):
TCTCTTCTATTTCTTTTCTCATT
Found at i:33876563 original size:50 final size:50
Alignment explanation
Indices: 33876423--33876758 Score: 283
Period size: 50 Copynumber: 6.7 Consensus size: 50
33876413 AAAGAGATCT
* * **
33876423 CATGTAAGACCATGTCTGGGACATGGCATTGGCATCATTGAGGTTATTAGAGTTCC
1 CATGTAAGACCATGTCTGGGACATGGCATTGGCA-C--CGA---TATGAGAACTCC
* * * **
33876479 CATGTAAGACCATGTGTAGGACATGGCGTTGGCACCGATATGAGAGGTCC
1 CATGTAAGACCATGTCTGGGACATGGCATTGGCACCGATATGAGAACTCC
* *
33876529 CCTGTAAGACCATGTCTGGGACATGGCATGGGCACCGATATGAGAACTCC
1 CATGTAAGACCATGTCTGGGACATGGCATTGGCACCGATATGAGAACTCC
* * ** *
33876579 CATGTAAGATCAT-TCTGGGATATGGCATTGGCA--G-TACAAAAAACATCC
1 CATGTAAGACCATGTCTGGGACATGGCATTGGCACCGATA-TGAGAAC-TCC
* * *
33876627 CATGTAGGACCATGTCTAGGACATGGCATGGGCACCGATATGAGAACTCC
1 CATGTAAGACCATGTCTGGGACATGGCATTGGCACCGATATGAGAACTCC
* * ** *
33876677 CATGTAAGATCAT-TCTGGGATATGGCATTGGCA--G-TACAAAAAACATCC
1 CATGTAAGACCATGTCTGGGACATGGCATTGGCACCGATA-TGAGAAC-TCC
* * *
33876725 CATGTAGGACCATGTCTAGGACATGGCTTTGGCA
1 CATGTAAGACCATGTCTGGGACATGGCATTGGCA
33876759 TGTTATTATC
Statistics
Matches: 230, Mismatches: 41, Indels: 25
0.78 0.14 0.08
Matches are distributed among these distances:
46 4 0.02
47 10 0.04
48 28 0.12
49 69 0.30
50 78 0.34
51 5 0.02
52 2 0.01
53 2 0.01
55 1 0.00
56 31 0.13
ACGTcount: A:0.29, C:0.21, G:0.26, T:0.24
Consensus pattern (50 bp):
CATGTAAGACCATGTCTGGGACATGGCATTGGCACCGATATGAGAACTCC
Found at i:33876652 original size:98 final size:98
Alignment explanation
Indices: 33876526--33876751 Score: 425
Period size: 98 Copynumber: 2.3 Consensus size: 98
33876516 ATATGAGAGG
* * *
33876526 TCCCCTGTAAGACCATGTCTGGGACATGGCATGGGCACCGATATGAGAACTCCCATGTAAGATCA
1 TCCCATGTAGGACCATGTCTAGGACATGGCATGGGCACCGATATGAGAACTCCCATGTAAGATCA
33876591 TTCTGGGATATGGCATTGGCAGTACAAAAAACA
66 TTCTGGGATATGGCATTGGCAGTACAAAAAACA
33876624 TCCCATGTAGGACCATGTCTAGGACATGGCATGGGCACCGATATGAGAACTCCCATGTAAGATCA
1 TCCCATGTAGGACCATGTCTAGGACATGGCATGGGCACCGATATGAGAACTCCCATGTAAGATCA
33876689 TTCTGGGATATGGCATTGGCAGTACAAAAAACA
66 TTCTGGGATATGGCATTGGCAGTACAAAAAACA
33876722 TCCCATGTAGGACCATGTCTAGGACATGGC
1 TCCCATGTAGGACCATGTCTAGGACATGGC
33876752 TTTGGCATGT
Statistics
Matches: 125, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
98 125 1.00
ACGTcount: A:0.30, C:0.23, G:0.25, T:0.23
Consensus pattern (98 bp):
TCCCATGTAGGACCATGTCTAGGACATGGCATGGGCACCGATATGAGAACTCCCATGTAAGATCA
TTCTGGGATATGGCATTGGCAGTACAAAAAACA
Found at i:33876728 original size:48 final size:49
Alignment explanation
Indices: 33876476--33876758 Score: 202
Period size: 49 Copynumber: 5.8 Consensus size: 49
33876466 TTATTAGAGT
* * * ** * **
33876476 TCCCATGTAAGACCATGTGTAGGACATGGCGTTGGCACCG-ATATGAGAGG
1 TCCCATGTAAGACCATGTCTAGGACATGGCATTGGCA--GTACAAAAAACA
* * * ** *
33876526 TCCCCTGTAAGACCATGTCTGGGACATGGCATGGGCACCGATA-TGAGAAC-
1 TCCCATGTAAGACCATGTCTAGGACATGGCATTGGCA--G-TACAAAAAACA
* * *
33876576 TCCCATGTAAGATCAT-TCTGGGATATGGCATTGGCAGTACAAAAAACA
1 TCCCATGTAAGACCATGTCTAGGACATGGCATTGGCAGTACAAAAAACA
* * ** *
33876624 TCCCATGTAGGACCATGTCTAGGACATGGCATGGGCACCGATA-TGAGAAC-
1 TCCCATGTAAGACCATGTCTAGGACATGGCATTGGCA--G-TACAAAAAACA
* * *
33876674 TCCCATGTAAGATCAT-TCTGGGATATGGCATTGGCAGTACAAAAAACA
1 TCCCATGTAAGACCATGTCTAGGACATGGCATTGGCAGTACAAAAAACA
* *
33876722 TCCCATGTAGGACCATGTCTAGGACATGGCTTTGGCA
1 TCCCATGTAAGACCATGTCTAGGACATGGCATTGGCA
33876759 TGTTATTATC
Statistics
Matches: 183, Mismatches: 39, Indels: 23
0.75 0.16 0.09
Matches are distributed among these distances:
46 4 0.02
47 10 0.05
48 28 0.15
49 69 0.38
50 63 0.34
51 6 0.03
52 3 0.02
ACGTcount: A:0.29, C:0.22, G:0.26, T:0.23
Consensus pattern (49 bp):
TCCCATGTAAGACCATGTCTAGGACATGGCATTGGCAGTACAAAAAACA
Found at i:33887524 original size:18 final size:19
Alignment explanation
Indices: 33887484--33887527 Score: 58
Period size: 18 Copynumber: 2.4 Consensus size: 19
33887474 AAAAAAAACG
33887484 TTTTGAAATTGAATAATGA
1 TTTTGAAATTGAATAATGA
33887503 -TTTGTAAA-TGAATAAT-A
1 TTTTG-AAATTGAATAATGA
33887520 TTTTGAAA
1 TTTTGAAA
33887528 ACGAACGACA
Statistics
Matches: 23, Mismatches: 0, Indels: 6
0.79 0.00 0.21
Matches are distributed among these distances:
17 4 0.17
18 16 0.70
19 3 0.13
ACGTcount: A:0.43, C:0.00, G:0.14, T:0.43
Consensus pattern (19 bp):
TTTTGAAATTGAATAATGA
Found at i:33888829 original size:21 final size:21
Alignment explanation
Indices: 33888805--33888848 Score: 52
Period size: 21 Copynumber: 2.1 Consensus size: 21
33888795 TCTGCGTACG
33888805 CGAGCACGTAGAGTAGCCACA
1 CGAGCACGTAGAGTAGCCACA
*** *
33888826 CGAGTTTGTGGAGTAGCCACA
1 CGAGCACGTAGAGTAGCCACA
33888847 CG
1 CG
33888849 GCCATGTTTC
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.27, C:0.25, G:0.32, T:0.16
Consensus pattern (21 bp):
CGAGCACGTAGAGTAGCCACA
Found at i:33891301 original size:66 final size:66
Alignment explanation
Indices: 33891195--33891326 Score: 210
Period size: 66 Copynumber: 2.0 Consensus size: 66
33891185 AAAACTTACA
* ** * *
33891195 AAATCAGCTTCATTCCTCTTTTGTTTATTGTCTAACCTAGACGTGAATGGTACCTTTGTCATGCT
1 AAATCAACTTCACCCCTCTTTTGTTTATTATCTAACCTAGACGGGAATGGTACCTTTGTCATGCT
33891260 T
66 T
*
33891261 AAATCAACTTCACCCCTCTTTTGTTTGTTATCTAACCTAGACGGGAATGGTACCTTTGTCATGCT
1 AAATCAACTTCACCCCTCTTTTGTTTATTATCTAACCTAGACGGGAATGGTACCTTTGTCATGCT
33891326 T
66 T
33891327 GATTTTGATA
Statistics
Matches: 60, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
66 60 1.00
ACGTcount: A:0.22, C:0.23, G:0.15, T:0.40
Consensus pattern (66 bp):
AAATCAACTTCACCCCTCTTTTGTTTATTATCTAACCTAGACGGGAATGGTACCTTTGTCATGCT
T
Found at i:33895762 original size:19 final size:19
Alignment explanation
Indices: 33895715--33895753 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
33895705 TTATTAAAAT
33895715 GAAGGACAAAGATTTGTTA
1 GAAGGACAAAGATTTGTTA
33895734 GAAGGACAAAGATTTGTTA
1 GAAGGACAAAGATTTGTTA
33895753 G
1 G
33895754 TAGTACAAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.41, C:0.05, G:0.28, T:0.26
Consensus pattern (19 bp):
GAAGGACAAAGATTTGTTA
Found at i:33897223 original size:20 final size:19
Alignment explanation
Indices: 33897141--33897222 Score: 85
Period size: 20 Copynumber: 4.2 Consensus size: 19
33897131 TATTTTTGTT
*
33897141 AAAA-TATCGATACTTAAG
1 AAAAGTATCGATACTTAAC
*
33897159 AACAAGTATCGATATTTTAAC
1 AA-AAGTATCGATA-CTTAAC
* * *
33897180 AAAACTATTGATATTTAATC
1 AAAAGTATCGATACTTAA-C
33897200 AAAAGTATCGATACTTAAC
1 AAAAGTATCGATACTTAAC
33897219 AAAA
1 AAAA
33897223 AATATTGTTA
Statistics
Matches: 53, Mismatches: 7, Indels: 7
0.79 0.10 0.10
Matches are distributed among these distances:
18 2 0.04
19 12 0.23
20 33 0.62
21 6 0.11
ACGTcount: A:0.49, C:0.12, G:0.09, T:0.30
Consensus pattern (19 bp):
AAAAGTATCGATACTTAAC
Found at i:33899275 original size:16 final size:17
Alignment explanation
Indices: 33899254--33899288 Score: 63
Period size: 17 Copynumber: 2.1 Consensus size: 17
33899244 TGATATAACA
33899254 AATAAAAA-TGTTTTTG
1 AATAAAAATTGTTTTTG
33899270 AATAAAAATTGTTTTTG
1 AATAAAAATTGTTTTTG
33899287 AA
1 AA
33899289 CAAAGAATCA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
16 8 0.44
17 10 0.56
ACGTcount: A:0.46, C:0.00, G:0.11, T:0.43
Consensus pattern (17 bp):
AATAAAAATTGTTTTTG
Found at i:33899456 original size:20 final size:22
Alignment explanation
Indices: 33899395--33899458 Score: 80
Period size: 20 Copynumber: 3.0 Consensus size: 22
33899385 CACTTCAAAT
* *
33899395 ATTTTT-AACTCAAGTGAAATA
1 ATTTTTAAAATCAAGTGAAACA
33899416 ATTTTTAAAATCAAGTGAAACA
1 ATTTTTAAAATCAAGTGAAACA
*
33899438 A-TTTT-ATATCAAGTGAAACA
1 ATTTTTAAAATCAAGTGAAACA
33899458 A
1 A
33899459 GTGAAAAACC
Statistics
Matches: 39, Mismatches: 3, Indels: 3
0.87 0.07 0.07
Matches are distributed among these distances:
20 15 0.38
21 10 0.26
22 14 0.36
ACGTcount: A:0.47, C:0.09, G:0.09, T:0.34
Consensus pattern (22 bp):
ATTTTTAAAATCAAGTGAAACA
Found at i:33899506 original size:20 final size:20
Alignment explanation
Indices: 33899481--33899526 Score: 56
Period size: 20 Copynumber: 2.3 Consensus size: 20
33899471 TTAAAACAAA
*
33899481 AAGTATCAATATTTTTTAAT
1 AAGTATCAATATATTTTAAT
***
33899501 AAGTATTGGTATATTTTAAT
1 AAGTATCAATATATTTTAAT
33899521 AAGTAT
1 AAGTAT
33899527 TGATGCCCAG
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.39, C:0.02, G:0.11, T:0.48
Consensus pattern (20 bp):
AAGTATCAATATATTTTAAT
Found at i:33900546 original size:9 final size:9
Alignment explanation
Indices: 33900528--33900582 Score: 80
Period size: 8 Copynumber: 6.4 Consensus size: 9
33900518 TCATTATGTT
*
33900528 AAATTAAAA
1 AAATTTAAA
33900537 AAATTT-AA
1 AAATTTAAA
33900545 AAATTT-AA
1 AAATTTAAA
33900553 AAATTTAAA
1 AAATTTAAA
33900562 AAATTTAAA
1 AAATTTAAA
33900571 AAA-TTAAA
1 AAATTTAAA
33900579 AAAT
1 AAAT
33900583 AATTAAACTA
Statistics
Matches: 43, Mismatches: 1, Indels: 4
0.90 0.02 0.08
Matches are distributed among these distances:
8 24 0.56
9 19 0.44
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (9 bp):
AAATTTAAA
Found at i:33900554 original size:17 final size:17
Alignment explanation
Indices: 33900535--33900582 Score: 80
Period size: 17 Copynumber: 2.9 Consensus size: 17
33900525 GTTAAATTAA
33900535 AAAAATTT-AAAAATTT
1 AAAAATTTAAAAAATTT
33900551 AAAAATTTAAAAAATTT
1 AAAAATTTAAAAAATTT
*
33900568 AAAAAATTAAAAAAT
1 AAAAATTTAAAAAAT
33900583 AATTAAACTA
Statistics
Matches: 30, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
16 8 0.27
17 22 0.73
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (17 bp):
AAAAATTTAAAAAATTT
Found at i:33903802 original size:3 final size:3
Alignment explanation
Indices: 33903794--33903836 Score: 86
Period size: 3 Copynumber: 14.3 Consensus size: 3
33903784 TTTTCTCAGC
33903794 TGT TGT TGT TGT TGT TGT TGT TGT TGT TGT TGT TGT TGT TGT T
1 TGT TGT TGT TGT TGT TGT TGT TGT TGT TGT TGT TGT TGT TGT T
33903837 TAAACACTTC
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 40 1.00
ACGTcount: A:0.00, C:0.00, G:0.33, T:0.67
Consensus pattern (3 bp):
TGT
Found at i:33912714 original size:20 final size:20
Alignment explanation
Indices: 33912685--33912726 Score: 66
Period size: 20 Copynumber: 2.1 Consensus size: 20
33912675 TGATTGAGTT
33912685 GATCAATAATGGTGATACAA
1 GATCAATAATGGTGATACAA
* *
33912705 GATCAGTAATGGTGATGCAA
1 GATCAATAATGGTGATACAA
33912725 GA
1 GA
33912727 AAATTATGTG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.40, C:0.10, G:0.26, T:0.24
Consensus pattern (20 bp):
GATCAATAATGGTGATACAA
Found at i:33919647 original size:16 final size:18
Alignment explanation
Indices: 33919623--33919659 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
33919613 CAATTCATCA
33919623 ATACACAA-T-CAAATTT
1 ATACACAATTGCAAATTT
*
33919639 ATACTCAATTGCAAATTT
1 ATACACAATTGCAAATTT
33919657 ATA
1 ATA
33919660 TCACTTATAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
16 7 0.39
17 1 0.06
18 10 0.56
ACGTcount: A:0.46, C:0.16, G:0.03, T:0.35
Consensus pattern (18 bp):
ATACACAATTGCAAATTT
Found at i:33926062 original size:18 final size:17
Alignment explanation
Indices: 33926034--33926068 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
33926024 TCCAGTTTCT
33926034 TCCTTTTTTCAAATAAA
1 TCCTTTTTTCAAATAAA
*
33926051 TCCTTATTTTCAATTAAA
1 TCCTT-TTTTCAAATAAA
33926069 ACACATTTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.34, C:0.17, G:0.00, T:0.49
Consensus pattern (17 bp):
TCCTTTTTTCAAATAAA
Found at i:33927260 original size:12 final size:12
Alignment explanation
Indices: 33927243--33927267 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
33927233 TGAAACTAAA
33927243 AAAATATTTTTT
1 AAAATATTTTTT
33927255 AAAATATTTTTT
1 AAAATATTTTTT
33927267 A
1 A
33927268 TACTTTTTAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (12 bp):
AAAATATTTTTT
Found at i:33927296 original size:22 final size:21
Alignment explanation
Indices: 33927245--33927299 Score: 65
Period size: 22 Copynumber: 2.5 Consensus size: 21
33927235 AAACTAAAAA
* *
33927245 AATATTTTTTAAAATATTTTT
1 AATATTTTTAAAAATAATTTT
*
33927266 TATACTTTTTAAAAATAATTTT
1 AATA-TTTTTAAAAATAATTTT
33927288 AATGATTTTTAA
1 AAT-ATTTTTAA
33927300 GTTTAAAAAT
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
21 3 0.11
22 24 0.86
23 1 0.04
ACGTcount: A:0.40, C:0.02, G:0.02, T:0.56
Consensus pattern (21 bp):
AATATTTTTAAAAATAATTTT
Found at i:33927461 original size:20 final size:20
Alignment explanation
Indices: 33927427--33927503 Score: 75
Period size: 20 Copynumber: 3.8 Consensus size: 20
33927417 ATTTTAAAAA
*
33927427 TTAAAAATAATAAAAATATTT
1 TTAAAAATTA-AAAAATATTT
33927448 TTAAAAATTAAAAAATCA-TT
1 TTAAAAATTAAAAAAT-ATTT
** *
33927468 AGAAATATTAAAAAATATTT
1 TTAAAAATTAAAAAATATTT
*
33927488 TTAAAATTTTAAAAAA
1 TTAAAA-ATTAAAAAA
33927504 CTTAATTTAA
Statistics
Matches: 45, Mismatches: 8, Indels: 6
0.76 0.14 0.10
Matches are distributed among these distances:
19 1 0.02
20 26 0.58
21 18 0.40
ACGTcount: A:0.61, C:0.01, G:0.01, T:0.36
Consensus pattern (20 bp):
TTAAAAATTAAAAAATATTT
Found at i:33927629 original size:10 final size:10
Alignment explanation
Indices: 33927616--33927663 Score: 64
Period size: 10 Copynumber: 5.0 Consensus size: 10
33927606 AAAACTATTA
33927616 AATTTTTAAT
1 AATTTTTAAT
33927626 AATTTTT-AT
1 AATTTTTAAT
*
33927635 ACTTTTTAAT
1 AATTTTTAAT
33927645 AA-TTTTAAT
1 AATTTTTAAT
*
33927654 GATTTTTAAT
1 AATTTTTAAT
33927664 TTTTAAAAGT
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
9 16 0.48
10 17 0.52
ACGTcount: A:0.35, C:0.02, G:0.02, T:0.60
Consensus pattern (10 bp):
AATTTTTAAT
Found at i:33927642 original size:19 final size:19
Alignment explanation
Indices: 33927617--33927663 Score: 69
Period size: 19 Copynumber: 2.5 Consensus size: 19
33927607 AAACTATTAA
*
33927617 ATTTTTAATAATTTTTAT-
1 ATTTTTAATAATTTTAATG
33927635 ACTTTTTAATAATTTTAATG
1 A-TTTTTAATAATTTTAATG
33927655 ATTTTTAAT
1 ATTTTTAAT
33927664 TTTTAAAAGT
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
18 1 0.04
19 24 0.92
20 1 0.04
ACGTcount: A:0.34, C:0.02, G:0.02, T:0.62
Consensus pattern (19 bp):
ATTTTTAATAATTTTAATG
Found at i:33929380 original size:597 final size:596
Alignment explanation
Indices: 33928274--33929427 Score: 1850
Period size: 597 Copynumber: 1.9 Consensus size: 596
33928264 ACTATGCAAG
* * *
33928274 TGCTGTTGCCCGAGTCTATCGTTCAATTGGTCAGGGCTACTTTGCCACCATCCCCAGCTGTTGAG
1 TGCTGTTGCCCGAGTCTATCGTTCAATTGATCAGGGCTACTTTACCACCATCCCCAGCTGCTGAG
* * * *
33928339 GATGACTAGCTGTGTTGGAGGTGGTCCACAAGGGGTCAATTCTCTTCTTCGGCCACTTAGCATCT
66 GATGACCAGCTATGTTGGAGATGGTCCACAAGGGGTCAATTCTCTTCTTCAGCCACTTAGCATCT
* *
33928404 GTTTGGAAGTGAGGGTTTGTCGAGGTATGGCTACGAGCATACATTGCCTTCGGTGCGAGGATGCT
131 GTTTGGAAGTGAGGGTTTGTCGAGGTATGGCTACGAGCATACATTGCCTTCGGTACGAGGATACT
* **
33928469 AATAAGACTACCGTACATGTTGTGTAAGACTGCTTTTTTGCAAAAAGTTTGTGTGGTGCTCCATC
196 AATAAGACTACCGTACATGTTGTGTAAGACTCCTTTTTTGCAAAAAGTTTGTGTGGCACTCCATC
33928534 GTCCCTAGATTATGGACAATTTATTAGCTTGTTGCAGGGGTGGCTTTGGTGGAATTTGCAATATA
261 GTCCCTAGATTATGGACAATTTATTAGCTTGTTGCAGGGGTGGCTTTGGTGGAATTTGCAATATA
*
33928599 GGGGTAGCATAGAGTGGATGGATGGTGAATGGTCGACGTTGTTTTCTATTATTTTTTAGCATATT
326 GGGGTAGCATAGAGTGGATGGATGGTGAATGGTCGACGTTGTTTTCTATTATTTTTTAGAATATT
* * *
33928664 TGAAAGAGTTAAAACGAGTATATTTTTGCAACTCCAATAGCAGCAAATATAAGGTAGTGGTGTCA
391 TGAAAGAGCTAAAACAAGTATATTTTTACAACTCCAATAGCAGCAAATATAAGGTAGTGGTGTCA
*
33928729 AATGTTGCATGGGCATGTAGCATGACTAGTATTTGTATGCATGAACTTGTGTTGAGTAGTAGGGC
456 AATGTTGCATGGGCACGTAGCATGACTAGTATTTGTATGCATGAACTTGTGTTGAGTAGTAGGGC
* * *
33928794 TAGTTATTGCTGTTGGCAACCATTGGATATGGGTTTGTTCAACATAGCTGGGAATTAGGACTAGC
521 TAGTCATCGCTATTGGCAACCATTGGATATGGGTTTGTTCAACATAGCTGGGAATTAGGACTAGC
33928859 AATGATGTGGT
586 AATGATGTGGT
* * *
33928870 TGCTGTTGCCCGAGTCTATCGTTCAGTTGATCAGGGCTACTTTACCACCATCCCCGGTTGCTGAG
1 TGCTGTTGCCCGAGTCTATCGTTCAATTGATCAGGGCTACTTTACCACCATCCCCAGCTGCTGAG
* *
33928935 GATGACCAGCTATGTTGGAGATGGTCCATAGGGGGTCAATTCTCTTCTTCAGCCA-TTCAGCATC
66 GATGACCAGCTATGTTGGAGATGGTCCACAAGGGGTCAATTCTCTTCTTCAGCCACTT-AGCATC
** * *
33928999 TGTTTGGCGGTGAGGGTTTGTCGAGGTATGGCTACG-GACATACATTGCCTTTGGTACTAGGATA
130 TGTTTGGAAGTGAGGGTTTGTCGAGGTATGGCTACGAG-CATACATTGCCTTCGGTACGAGGATA
*
33929063 CTAATAAGACTACCGTACATGTTGTTTGAA-ACTACCTTTTTTGCAAAAAGTTTGTGTGGCACTC
194 CTAATAAGACTACCGTACATGTTGTGT-AAGACT-CCTTTTTTGCAAAAAGTTTGTGTGGCACTC
* * * * **
33929127 CATTGTCCTTAGATTATGGACGATTTATTGGCTTGTTGCAGGGGTGGCTTTGGTGGAATTTGCGG
257 CATCGTCCCTAGATTATGGACAATTTATTAGCTTGTTGCAGGGGTGGCTTTGGTGGAATTTGCAA
* * *
33929192 TATAGGGGTAGCATAGAGTGGATGGATGGTGAATGGTCTG-CGTTGTTTTGTATTGTTTTTTATA
322 TATAGGGGTAGCATAGAGTGGATGGATGGTGAATGGTC-GACGTTGTTTTCTATTATTTTTTAGA
33929256 ATATTTGAAAGAGCTAAAACAAGTATATTTTTACAACTCCAATAGCAGCAAATATTAA-GTAGTG
386 ATATTTGAAAGAGCTAAAACAAGTATATTTTTACAACTCCAATAGCAGCAAATA-TAAGGTAGTG
*
33929320 GTGTCAAATGTTGCATGGGCACGTAGGATGACTAGTATTTGTATGCATGAACTTGTGTTGAGTAG
450 GTGTCAAATGTTGCATGGGCACGTAGCATGACTAGTATTTGTATGCATGAACTTGTGTTGAGTAG
*
33929385 TAGGGCTAGTCATCGCTATTGGCAACCATTGGATGTGGGTTTG
515 TAGGGCTAGTCATCGCTATTGGCAACCATTGGATATGGGTTTG
33929428 GTTAAGGTCA
Statistics
Matches: 511, Mismatches: 41, Indels: 11
0.91 0.07 0.02
Matches are distributed among these distances:
595 3 0.01
596 199 0.39
597 305 0.60
598 4 0.01
ACGTcount: A:0.23, C:0.16, G:0.27, T:0.34
Consensus pattern (596 bp):
TGCTGTTGCCCGAGTCTATCGTTCAATTGATCAGGGCTACTTTACCACCATCCCCAGCTGCTGAG
GATGACCAGCTATGTTGGAGATGGTCCACAAGGGGTCAATTCTCTTCTTCAGCCACTTAGCATCT
GTTTGGAAGTGAGGGTTTGTCGAGGTATGGCTACGAGCATACATTGCCTTCGGTACGAGGATACT
AATAAGACTACCGTACATGTTGTGTAAGACTCCTTTTTTGCAAAAAGTTTGTGTGGCACTCCATC
GTCCCTAGATTATGGACAATTTATTAGCTTGTTGCAGGGGTGGCTTTGGTGGAATTTGCAATATA
GGGGTAGCATAGAGTGGATGGATGGTGAATGGTCGACGTTGTTTTCTATTATTTTTTAGAATATT
TGAAAGAGCTAAAACAAGTATATTTTTACAACTCCAATAGCAGCAAATATAAGGTAGTGGTGTCA
AATGTTGCATGGGCACGTAGCATGACTAGTATTTGTATGCATGAACTTGTGTTGAGTAGTAGGGC
TAGTCATCGCTATTGGCAACCATTGGATATGGGTTTGTTCAACATAGCTGGGAATTAGGACTAGC
AATGATGTGGT
Found at i:33929712 original size:55 final size:55
Alignment explanation
Indices: 33929642--33929794 Score: 213
Period size: 53 Copynumber: 2.8 Consensus size: 55
33929632 ACATGCTATG
* *
33929642 TAACAACCAA-TTAAACATATAAACAATCGATTCAAAATAAGCAATATTCCAACA
1 TAACAATCAATTTAAACATATAAACAATCGATTCAAAAGAAGCAATATTCCAACA
** * * *
33929696 TAACAATTGATTTAAACATATAAATAATCG--TCAAAAGAAGTAGTATTCCAACA
1 TAACAATCAATTTAAACATATAAACAATCGATTCAAAAGAAGCAATATTCCAACA
*
33929749 TGACAATCAATTTAAACATATAAACAATCGATTCAAAAGAAGCAAT
1 TAACAATCAATTTAAACATATAAACAATCGATTCAAAAGAAGCAAT
33929795 TAAGAAGAAA
Statistics
Matches: 83, Mismatches: 13, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
53 46 0.55
54 7 0.08
55 30 0.36
ACGTcount: A:0.52, C:0.16, G:0.07, T:0.25
Consensus pattern (55 bp):
TAACAATCAATTTAAACATATAAACAATCGATTCAAAAGAAGCAATATTCCAACA
Found at i:33937353 original size:23 final size:23
Alignment explanation
Indices: 33937323--33937368 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
33937313 CACCAATGTG
33937323 CTTTGTTCTCTCATGAAACATTT
1 CTTTGTTCTCTCATGAAACATTT
33937346 CTTTGTTCTCTCATGAAACATTT
1 CTTTGTTCTCTCATGAAACATTT
33937369 AATCTTTTGT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.22, C:0.22, G:0.09, T:0.48
Consensus pattern (23 bp):
CTTTGTTCTCTCATGAAACATTT
Found at i:33951096 original size:14 final size:16
Alignment explanation
Indices: 33951080--33951109 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
33951070 GTTGAATAAT
33951080 AAAA-TATAAATATTA
1 AAAATTATAAATATTA
33951095 AAAATTATAAATATT
1 AAAATTATAAATATT
33951110 TCGATTCTAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 4 0.29
16 10 0.71
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (16 bp):
AAAATTATAAATATTA
Found at i:33955626 original size:22 final size:19
Alignment explanation
Indices: 33955598--33955643 Score: 56
Period size: 20 Copynumber: 2.3 Consensus size: 19
33955588 ATTTAAAATT
33955598 TAAAAGTAATAAAACATAATAA
1 TAAAAGT-A-AAAACATAA-AA
*
33955620 TAAAAGTAAAAAGATAAAA
1 TAAAAGTAAAAACATAAAA
33955639 TAAAA
1 TAAAA
33955644 TTATCATCAT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
19 7 0.30
20 8 0.35
21 1 0.04
22 7 0.30
ACGTcount: A:0.72, C:0.02, G:0.07, T:0.20
Consensus pattern (19 bp):
TAAAAGTAAAAACATAAAA
Found at i:33956658 original size:20 final size:20
Alignment explanation
Indices: 33956626--33956695 Score: 70
Period size: 20 Copynumber: 3.4 Consensus size: 20
33956616 TTGTGCGGGA
33956626 TTGCACTTT-GGTGCCTCTGT
1 TTGCA-TTTCGGTGCCTCTGT
*
33956646 TTGCATTTCGGTGCCTTTGTAT
1 TTGCATTTCGGTGCCTCTG--T
* *
33956668 TTGCACTACGGTGCCTCTGT
1 TTGCATTTCGGTGCCTCTGT
*
33956688 TAGCATTT
1 TTGCATTT
33956696 TGATGCTCTT
Statistics
Matches: 40, Mismatches: 7, Indels: 6
0.75 0.13 0.11
Matches are distributed among these distances:
19 3 0.08
20 20 0.50
22 17 0.43
ACGTcount: A:0.10, C:0.23, G:0.23, T:0.44
Consensus pattern (20 bp):
TTGCATTTCGGTGCCTCTGT
Found at i:33980119 original size:26 final size:26
Alignment explanation
Indices: 33980090--33980164 Score: 132
Period size: 26 Copynumber: 2.9 Consensus size: 26
33980080 CACCAATATT
* *
33980090 GCAGCAAAGCTGCCAGTAATAGTGTC
1 GCAGCAAAGCTGCCAGTAACAGTATC
33980116 GCAGCAAAGCTGCCAGTAACAGTATC
1 GCAGCAAAGCTGCCAGTAACAGTATC
33980142 GCAGCAAAGCTGCCAGTAACAGT
1 GCAGCAAAGCTGCCAGTAACAGT
33980165 CTACTTCCTC
Statistics
Matches: 47, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 47 1.00
ACGTcount: A:0.33, C:0.25, G:0.25, T:0.16
Consensus pattern (26 bp):
GCAGCAAAGCTGCCAGTAACAGTATC
Found at i:33980350 original size:27 final size:27
Alignment explanation
Indices: 33980320--33980379 Score: 84
Period size: 27 Copynumber: 2.2 Consensus size: 27
33980310 CATCTCCTAG
33980320 GGGTATAACAGTTATTTTACCCTATGA
1 GGGTATAACAGTTATTTTACCCTATGA
** * *
33980347 GGGTATTTCGGTTATTTTACCCTATGG
1 GGGTATAACAGTTATTTTACCCTATGA
33980374 GGGTAT
1 GGGTAT
33980380 TTCGGTCATT
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.22, C:0.13, G:0.25, T:0.40
Consensus pattern (27 bp):
GGGTATAACAGTTATTTTACCCTATGA
Found at i:33980380 original size:27 final size:27
Alignment explanation
Indices: 33980333--33980471 Score: 179
Period size: 27 Copynumber: 5.1 Consensus size: 27
33980323 TATAACAGTT
* *
33980333 ATTTTACCCTATGAGGGTATTTCGGTT
1 ATTTTACCCTATGGGGGTATTTCGGTC
33980360 ATTTTACCCTATGGGGGTATTTCGGTC
1 ATTTTACCCTATGGGGGTATTTCGGTC
* * *** *
33980387 ATTTAACCCAATGATTGTATTTCGATC
1 ATTTTACCCTATGGGGGTATTTCGGTC
*
33980414 ATTTTACCCTATGGGGGTATTTCGATC
1 ATTTTACCCTATGGGGGTATTTCGGTC
* *
33980441 ATTTTACCCTATGGGGGTATGTCGATC
1 ATTTTACCCTATGGGGGTATTTCGGTC
33980468 ATTT
1 ATTT
33980472 CTTGACCTCT
Statistics
Matches: 98, Mismatches: 14, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 98 1.00
ACGTcount: A:0.20, C:0.17, G:0.21, T:0.42
Consensus pattern (27 bp):
ATTTTACCCTATGGGGGTATTTCGGTC
Found at i:33980466 original size:54 final size:54
Alignment explanation
Indices: 33980333--33980471 Score: 197
Period size: 54 Copynumber: 2.6 Consensus size: 54
33980323 TATAACAGTT
* * *
33980333 ATTTTACCCTATGAGGGTATTTCGGTTATTTTACCCTATGGGGGTATTTCGGTC
1 ATTTTACCCTATGAGGGTATTTCGATCATTTTACCCTATGGGGGTATTTCGATC
* * **
33980387 ATTTAACCCAATGATTGTATTTCGATCATTTTACCCTATGGGGGTATTTCGATC
1 ATTTTACCCTATGAGGGTATTTCGATCATTTTACCCTATGGGGGTATTTCGATC
* *
33980441 ATTTTACCCTATGGGGGTATGTCGATCATTT
1 ATTTTACCCTATGAGGGTATTTCGATCATTT
33980472 CTTGACCTCT
Statistics
Matches: 72, Mismatches: 13, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
54 72 1.00
ACGTcount: A:0.20, C:0.17, G:0.21, T:0.42
Consensus pattern (54 bp):
ATTTTACCCTATGAGGGTATTTCGATCATTTTACCCTATGGGGGTATTTCGATC
Found at i:33988011 original size:26 final size:26
Alignment explanation
Indices: 33987880--33988007 Score: 123
Period size: 26 Copynumber: 4.9 Consensus size: 26
33987870 ACACACCAAC
* * * * *
33987880 ATCGCAGCAAAGCTGTCACTAATAGT
1 ATCGCAGCAGAGCTGCCAATAACAAT
* * * **
33987906 GTCGCAACAAAGCTGCCCGTAACAAT
1 ATCGCAGCAGAGCTGCCAATAACAAT
*
33987932 ATCGCAGCAGAGCTGCCAGTAACAAT
1 ATCGCAGCAGAGCTGCCAATAACAAT
*
33987958 ATCGCAGCAGAGCTGCCAATAACAGT
1 ATCGCAGCAGAGCTGCCAATAACAAT
*
33987984 ATTGCAGC-GAAGCTGCCAATAACA
1 ATCGCAGCAG-AGCTGCCAATAACA
33988008 GTATACTTCC
Statistics
Matches: 87, Mismatches: 14, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
25 1 0.01
26 86 0.99
ACGTcount: A:0.35, C:0.27, G:0.21, T:0.17
Consensus pattern (26 bp):
ATCGCAGCAGAGCTGCCAATAACAAT
Found at i:33988204 original size:27 final size:27
Alignment explanation
Indices: 33988182--33988323 Score: 207
Period size: 27 Copynumber: 5.3 Consensus size: 27
33988172 GGGTATAACA
*
33988182 GTCATTTTACCCTATGAGAGTATTTCG
1 GTCATTTTACCCTATGAGGGTATTTCG
*
33988209 GTCATTTTATCCTATG-GGGATATTTCG
1 GTCATTTTACCCTATGAGGG-TATTTCG
*
33988236 GTCATTTTACCCTATGATGGTATTTCG
1 GTCATTTTACCCTATGAGGGTATTTCG
* *
33988263 ATTATTTTACCCTAT-AGTGGTATTTCG
1 GTCATTTTACCCTATGAG-GGTATTTCG
33988290 GTCATTTTACCCTATGAGGGTATTTCG
1 GTCATTTTACCCTATGAGGGTATTTCG
33988317 GTCATTT
1 GTCATTT
33988324 CTTGACCTCT
Statistics
Matches: 102, Mismatches: 9, Indels: 8
0.86 0.08 0.07
Matches are distributed among these distances:
26 3 0.03
27 95 0.93
28 4 0.04
ACGTcount: A:0.20, C:0.17, G:0.19, T:0.44
Consensus pattern (27 bp):
GTCATTTTACCCTATGAGGGTATTTCG
Found at i:33992327 original size:20 final size:20
Alignment explanation
Indices: 33992302--33992351 Score: 82
Period size: 20 Copynumber: 2.5 Consensus size: 20
33992292 TGAACCCTTC
*
33992302 CATTTACTTACTTTCCATTG
1 CATTTACTTACTTTCCATTA
33992322 CATTTACTTACTTTCCATTA
1 CATTTACTTACTTTCCATTA
*
33992342 TATTTACTTA
1 CATTTACTTA
33992352 TTTTAGCTTA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.24, C:0.22, G:0.02, T:0.52
Consensus pattern (20 bp):
CATTTACTTACTTTCCATTA
Found at i:33997747 original size:23 final size:23
Alignment explanation
Indices: 33997698--33997747 Score: 73
Period size: 23 Copynumber: 2.2 Consensus size: 23
33997688 TGCTTATTAT
* *
33997698 TTATCCACTTCGGCGGTGCTCAG
1 TTATCCACTTCGGCAGTGCTCAA
*
33997721 TTATCCACTTCGGCAGTGTTCAA
1 TTATCCACTTCGGCAGTGCTCAA
33997744 TTAT
1 TTAT
33997748 ATGCTTTAGC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.18, C:0.26, G:0.20, T:0.36
Consensus pattern (23 bp):
TTATCCACTTCGGCAGTGCTCAA
Found at i:33999761 original size:40 final size:40
Alignment explanation
Indices: 33999649--33999765 Score: 130
Period size: 40 Copynumber: 2.9 Consensus size: 40
33999639 ACCAAGGGTA
* * * *
33999649 AAGTATCGATACTTTGA-AGAAAGTATAAATAAC-TAGACCA
1 AAGTATAGATACTTTGAGA-AAAGTATAAAT-ACTTTGATCG
* *
33999689 AAGTATAGATACTTTTAGTAAAGTATAAATACTTTGATCG
1 AAGTATAGATACTTTGAGAAAAGTATAAATACTTTGATCG
**
33999729 AAGTATAGATACTTTGAGAAAAGTATCGATACTTTGA
1 AAGTATAGATACTTTGAGAAAAGTATAAATACTTTGA
33999766 GTAAACTAGC
Statistics
Matches: 65, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
39 2 0.03
40 63 0.97
ACGTcount: A:0.43, C:0.09, G:0.16, T:0.32
Consensus pattern (40 bp):
AAGTATAGATACTTTGAGAAAAGTATAAATACTTTGATCG
Found at i:33999766 original size:20 final size:20
Alignment explanation
Indices: 33999648--33999766 Score: 98
Period size: 20 Copynumber: 6.0 Consensus size: 20
33999638 TACCAAGGGT
*
33999648 AAAGTATCGATACTTTGA-A
1 AAAGTATAGATACTTTGAGA
* * **
33999667 GAAAGTATAAATAAC-TAGACC
1 -AAAGTATAGAT-ACTTTGAGA
* *
33999688 AAAGTATAGATACTTTTAGT
1 AAAGTATAGATACTTTGAGA
* **
33999708 AAAGTATAAATACTTTGATC
1 AAAGTATAGATACTTTGAGA
*
33999728 GAAGTATAGATACTTTGAGA
1 AAAGTATAGATACTTTGAGA
*
33999748 AAAGTATCGATACTTTGAG
1 AAAGTATAGATACTTTGAG
33999767 TAAACTAGCG
Statistics
Matches: 77, Mismatches: 19, Indels: 6
0.75 0.19 0.06
Matches are distributed among these distances:
19 2 0.03
20 73 0.95
21 2 0.03
ACGTcount: A:0.43, C:0.09, G:0.17, T:0.31
Consensus pattern (20 bp):
AAAGTATAGATACTTTGAGA
Found at i:33999778 original size:20 final size:20
Alignment explanation
Indices: 33999736--33999780 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
33999726 TCGAAGTATA
* *
33999736 GATACTTTGAGAAAAGTATC
1 GATACTTTGAGAAAACTAGC
*
33999756 GATACTTTGAGTAAACTAGC
1 GATACTTTGAGAAAACTAGC
33999776 GATAC
1 GATAC
33999781 CTTGGGTATT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.38, C:0.13, G:0.20, T:0.29
Consensus pattern (20 bp):
GATACTTTGAGAAAACTAGC
Found at i:34002097 original size:32 final size:33
Alignment explanation
Indices: 34002061--34002126 Score: 84
Period size: 32 Copynumber: 2.0 Consensus size: 33
34002051 TAGCACAATC
*
34002061 TATTTTATCTATT-AAGG-CT-TAATATTTTGATT
1 TATTTTAT-TATTCAAGGACTGTAATACTTT-ATT
34002093 TATTTTATTATTCAAGGACTGTAATACTTTATT
1 TATTTTATTATTCAAGGACTGTAATACTTTATT
34002126 T
1 T
34002127 TTAAACTAAA
Statistics
Matches: 30, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
31 4 0.13
32 12 0.40
33 6 0.20
34 8 0.27
ACGTcount: A:0.29, C:0.08, G:0.09, T:0.55
Consensus pattern (33 bp):
TATTTTATTATTCAAGGACTGTAATACTTTATT
Found at i:34005578 original size:172 final size:177
Alignment explanation
Indices: 34005284--34005634 Score: 613
Period size: 172 Copynumber: 2.0 Consensus size: 177
34005274 TAAATCCATA
*
34005284 TAGAACTGCACTTCTTTTATTTATTTTTTTTAGAATAAGGTGTTTCAAGTTTCAACCTTACTACA
1 TAGAACTGCACTTCTTTTATTTATGTTTTTTAGAATAAGGTG-TT--AGTTTCAACCTTACTACA
34005349 CTCCTTCTATTAGAATATGGTTTTACAAGCCTATAAATAGATATAGTCTACTCCTCTTGTAATCA
63 CTCCTTCTATTAGAATATGGTTTTACAAGCCTATAAATAGATATAGTCTACTCCTCTTGTAATCA
*
34005414 TTCGAATTCAACATAGTGAATTATCTTCTCCTCTACCCGTGGTTTTTTTT
128 TTCGAATTCAACATAATGAATTATCTTCTCCTCTACCCGTGGTTTTTTTT
34005464 TAGAACTGCACTTCTTTTATTTA-GTTTTTTAGAATAA-G-G-T-GTTTCAACCTTACTACACTC
1 TAGAACTGCACTTCTTTTATTTATGTTTTTTAGAATAAGGTGTTAGTTTCAACCTTACTACACTC
*
34005524 TTTCTATTAGAATATGGTTTTACAAGCCTATAAATAGATATAGTCTACTCCTCTTGTAATCATTC
66 CTTCTATTAGAATATGGTTTTACAAGCCTATAAATAGATATAGTCTACTCCTCTTGTAATCATTC
34005589 GAATTCAACATAATGAATTATCTTCTCCTCTACCCGTGGTTTTTTT
131 GAATTCAACATAATGAATTATCTTCTCCTCTACCCGTGGTTTTTTT
34005635 CCTGAAAGGG
Statistics
Matches: 168, Mismatches: 3, Indels: 8
0.94 0.02 0.04
Matches are distributed among these distances:
172 129 0.77
175 1 0.01
177 1 0.01
178 1 0.01
179 13 0.08
180 23 0.14
ACGTcount: A:0.27, C:0.19, G:0.11, T:0.43
Consensus pattern (177 bp):
TAGAACTGCACTTCTTTTATTTATGTTTTTTAGAATAAGGTGTTAGTTTCAACCTTACTACACTC
CTTCTATTAGAATATGGTTTTACAAGCCTATAAATAGATATAGTCTACTCCTCTTGTAATCATTC
GAATTCAACATAATGAATTATCTTCTCCTCTACCCGTGGTTTTTTTT
Found at i:34006167 original size:17 final size:17
Alignment explanation
Indices: 34006145--34006178 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
34006135 CTCGGGTTGA
34006145 CTTTAAAGCATTTGTAT
1 CTTTAAAGCATTTGTAT
34006162 CTTTAAAGCATTTGTAT
1 CTTTAAAGCATTTGTAT
34006179 GATCATATAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.29, C:0.12, G:0.12, T:0.47
Consensus pattern (17 bp):
CTTTAAAGCATTTGTAT
Found at i:34009126 original size:3 final size:3
Alignment explanation
Indices: 34009118--34009151 Score: 68
Period size: 3 Copynumber: 11.3 Consensus size: 3
34009108 CTAAGGTCTC
34009118 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T
34009152 TGAGATGTAT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (3 bp):
TAA
Done.