Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold_974 ID=scaffold_974-JGI_221_v2.0

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3537
ACGTcount: A:0.19, C:0.08, G:0.08, T:0.15

Warning! 1746 characters in sequence are not A, C, G, or T


Found at i:2965 original size:15 final size:15

Alignment explanation


    Indices: 2947--2981  Score: 70
    Period size: 15  Copynumber: 2.3  Consensus size: 15

       2937 ATGTAAGAGA

                           
       2947 TGACAAAAGTAGCTG
          1 TGACAAAAGTAGCTG

                           
       2962 TGACAAAAGTAGCTG
          1 TGACAAAAGTAGCTG

                 
       2977 TGACA
          1 TGACA

       2982 CAAGCAGTGA


Statistics
Matches: 20,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  15   20  1.00

ACGTcount: A:0.40, C:0.14, G:0.26, T:0.20


Consensus pattern (15 bp):   
TGACAAAAGTAGCTG
Done.