Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold_981 ID=scaffold_981-JGI_221_v2.0

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4185
ACGTcount: A:0.13, C:0.07, G:0.08, T:0.13

Warning! 2447 characters in sequence are not A, C, G, or T


Found at i:728 original size:20 final size:20

Alignment explanation


    Indices: 703--745  Score: 59
    Period size: 20  Copynumber: 2.1  Consensus size: 20

        693 AAAAGAAAAG

                                
        703 AAAGAAGAGAGATTGAGAGA
          1 AAAGAAGAGAGATTGAGAGA

                  **       *    
        723 AAAGAATCGAGATTGTGAGA
          1 AAAGAAGAGAGATTGAGAGA

               
        743 AAA
          1 AAA

        746 ACAAGAGCAA


Statistics
Matches: 20,  Mismatches: 3, Indels: 0
        0.87            0.13        0.00

Matches are distributed among these distances:
  20   20  1.00

ACGTcount: A:0.53, C:0.02, G:0.30, T:0.14


Consensus pattern (20 bp):   
AAAGAAGAGAGATTGAGAGA
Done.