Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: scaffold_983 ID=scaffold_983-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 2906
ACGTcount: A:0.15, C:0.14, G:0.11, T:0.19
Warning! 1174 characters in sequence are not A, C, G, or T
Found at i:369 original size:132 final size:132
Alignment explanation
Indices: 1--706 Score: 1094
Period size: 132 Copynumber: 5.4 Consensus size: 132
* * *
1 TCTGCTTTCCACTATCTTGGAAAGATAAGGTTTACCATCTTTGATCTGCTTCGCTACTGCTTAGG
1 TCTGCTTTCCACTATCTTGGAAAGATAAGATTTACCATCTTTGATCTGCTCCACTACTGCTTAGG
* * * *
66 GAGATAAGATCTACAATCCTAAACCTTCTGCGCTGCTGCTCATAGAGACAAGGCTTTATGGCTTA
66 GAGATAAGATCTACAATCTTCAACCTTCTCCGCTGCTGCTCAGAGAGACAAGGCTTTATGGCTTA
131 AA
131 AA
* * *
133 TCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCAT-TTTGATCTGTTCCACTACTGCTTAGG
1 TCTGCTTTCCACTATCTTGGAAAGATAAGATTTACCATCTTTGATCTGCTCCACTACTGCTTAGG
* * *
197 GAGATAAGATCTACAATCTTCAACCATCTCCGCTGCTGCTCAGAGAGACCAGGCTTTTTGGCTTA
66 GAGATAAGATCTACAATCTTCAACCTTCTCCGCTGCTGCTCAGAGAGACAAGGCTTTATGGCTTA
262 AA
131 AA
*
264 TCTGCTTTCCACTATCTTGGAAAGATAAGATATACCATCTTTGATCTGCTCCACTACTGCTTAGG
1 TCTGCTTTCCACTATCTTGGAAAGATAAGATTTACCATCTTTGATCTGCTCCACTACTGCTTAGG
*
329 GAGATAAGATCTACAATCTTCAACCTTCTGCGCTGCTGCTCAGAGAGACAAGGCTTTATGGCTTA
66 GAGATAAGATCTACAATCTTCAACCTTCTCCGCTGCTGCTCAGAGAGACAAGGCTTTATGGCTTA
394 AA
131 AA
* * ** * *
396 TCTGCTTCCCACTATCTTGCAAAGATAAGATTTGTCGTCTTTGATCTGCTCCACTA-TGGCATAG
1 TCTGCTTTCCACTATCTTGGAAAGATAAGATTTACCATCTTTGATCTGCTCCACTACT-GCTTAG
* * *
460 GGAGATAAGATCTACAATCTTCAACCTTCTCCGCTGCTACTTAGAGAGACAAGGCTTTGTGGCTT
65 GGAGATAAGATCTACAATCTTCAACCTTCTCCGCTGCTGCTCAGAGAGACAAGGCTTTATGGCTT
525 AAA
130 AAA
* *
528 TTTGCTTACCACTATCTTGGAAAGATAAGATTTGA-CATCTTTGATCTGCTCCACTACTGCTTAG
1 TCTGCTTTCCACTATCTTGGAAAGATAAGATTT-ACCATCTTTGATCTGCTCCACTACTGCTTAG
* * * *
592 GGAGAGAAGATCTACAATCTTCAACCTTCTCCGCTGCTTCTCAGAGAGACAATGCTTTTTGGCTT
65 GGAGATAAGATCTACAATCTTCAACCTTCTCCGCTGCTGCTCAGAGAGACAAGGCTTTATGGCTT
657 AAA
130 AAA
*
660 TCTGCTTTCCACTATCTTGGAAATATAAGATTTACCATCTTTGATCT
1 TCTGCTTTCCACTATCTTGGAAAGATAAGATTTACCATCTTTGATCT
707 NNNNNNNNNN
Statistics
Matches: 523, Mismatches: 46, Indels: 10
0.90 0.08 0.02
Matches are distributed among these distances:
131 120 0.23
132 402 0.77
133 1 0.00
ACGTcount: A:0.26, C:0.23, G:0.18, T:0.33
Consensus pattern (132 bp):
TCTGCTTTCCACTATCTTGGAAAGATAAGATTTACCATCTTTGATCTGCTCCACTACTGCTTAGG
GAGATAAGATCTACAATCTTCAACCTTCTCCGCTGCTGCTCAGAGAGACAAGGCTTTATGGCTTA
AA
Found at i:2121 original size:132 final size:132
Alignment explanation
Indices: 1881--2158 Score: 475
Period size: 132 Copynumber: 2.1 Consensus size: 132
1871 NNNNNNNNNN
* *
1881 ATCTTTGATCTACTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTTCTCCGCTGC
1 ATCTTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATCCTCAACCTTCTCCGCTGC
* * * *
1946 TGCTCAGAGAGACAAGGCTTTTTGGCTTAAATCTGCTTTCCACTATCTTGGAAATATAAGATTTA
66 TGCACAGAGAGACAAGGCTTTATGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTA
2011 CC
131 CC
*
2013 ATCTTTGATATGCTCCACTACTGCTTAGGGAGATAAGATCTACAATCCTCAACCTTCTCCGCTGC
1 ATCTTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATCCTCAACCTTCTCCGCTGC
*
2078 TGCACAGAGAGACAAGGCTTTATGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTG
66 TGCACAGAGAGACAAGGCTTTATGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTA
2143 CC
131 CC
*
2145 ATCGTTGATCTGCT
1 ATCTTTGATCTGCT
2159 TCCCACTATC
Statistics
Matches: 136, Mismatches: 10, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
132 136 1.00
ACGTcount: A:0.26, C:0.24, G:0.17, T:0.32
Consensus pattern (132 bp):
ATCTTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATCCTCAACCTTCTCCGCTGC
TGCACAGAGAGACAAGGCTTTATGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTA
CC
Found at i:2171 original size:44 final size:44
Alignment explanation
Indices: 2108--2202 Score: 163
Period size: 44 Copynumber: 2.2 Consensus size: 44
2098 TATGGCTTAA
2108 ATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCATCGTTG
1 ATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCATCGTTG
* * *
2152 ATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGTCGTCTTTG
1 ATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCATCGTTG
2196 ATCTGCT
1 ATCTGCT
2203 CCACTACTGC
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
44 48 1.00
ACGTcount: A:0.23, C:0.22, G:0.18, T:0.37
Consensus pattern (44 bp):
ATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCATCGTTG
Found at i:2314 original size:132 final size:132
Alignment explanation
Indices: 2152--2906 Score: 1237
Period size: 132 Copynumber: 5.7 Consensus size: 132
2142 GCCATCGTTG
* *
2152 ATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGTCGTCTTTGATCTGCTCCACTACTGCTTAG
1 ATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCATCTTTGATCTGCTCCACTACTGCTTAG
* * * *
2217 GGAGATAAGATCTACAATCTTCAACCTTCTCCGCTACTACTCAGGGAGACAAGGCTTGGTGGCAT
66 GGAGATAAGATCTACAATCTTCAACCTTCTCCGCTACTGCTCAGAGAGACAAGGCTTTGTGGCTT
2282 AA
131 AA
* *
2284 ATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGTCGTCTTTGATCTGCTCCACTACTGCTTAG
1 ATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCATCTTTGATCTGCTCCACTACTGCTTAG
* * * *
2349 GGAGATAAGATCTACAATCTTCATCCTTCTCCGCTACTACCCAGAGAGACAAGCCTTTGTGGCTT
66 GGAGATAAGATCTACAATCTTCAACCTTCTCCGCTACTGCTCAGAGAGACAAGGCTTTGTGGCTT
2414 AA
131 AA
* *
2416 ATCTGCTTCCCACTATCTTGGAAAGATATGATTT-CCATCTTTGATCTGCTCCACTATTGCTTAG
1 ATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCATCTTTGATCTGCTCCACTACTGCTTAG
* *
2480 GGAGATAAGATCTACAATCTTCAACCTTCTCCGCTGCTGCTCAGAGAGACAAGGCTTTATGGCTT
66 GGAGATAAGATCTACAATCTTCAACCTTCTCCGCTACTGCTCAGAGAGACAAGGCTTTGTGGCTT
2545 AA
131 AA
*
2547 ATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCATCTTTGATCTGCTCCACTACTGGTTAG
1 ATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCATCTTTGATCTGCTCCACTACTGCTTAG
* *
2612 GGAGATAAGATCTACAATCTTCAACCTACTCCGCTACTGCTCAGAGAGACAAGGCTTTCTGGCTT
66 GGAGATAAGATCTACAATCTTCAACCTTCTCCGCTACTGCTCAGAGAGACAAGGCTTTGTGGCTT
2677 AA
131 AA
*
2679 ATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCATCTTTGATCTGTTCCACTACTGCTTAG
1 ATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCATCTTTGATCTGCTCCACTACTGCTTAG
* *
2744 GGAGATAAGATCTACAATCTTCAACCATCTCCGCTGCTGCTCAGAGAGACTAAGGTCTTT-TGGA
66 GGAGATAAGATCTACAATCTTCAACCTTCTCCGCTACTGCTCAGAGAGAC-AAGG-CTTTGTGG-
2808 CTT-A
128 CTTAA
*
2812 ATCTGTCCTTTCCACTATCTTGGAAAGATAAGATTTGCCATCTTTGATCTGCTCCACTACTGCTT
1 ATCTG--CTTCCCACTATCTTGGAAAGATAAGATTTGCCATCTTTGATCTGCTCCACTACTGCTT
2877 AGGGAGATAAGATCTACAATCTTCAACCTT
64 AGGGAGATAAGATCTACAATCTTCAACCTT
Statistics
Matches: 587, Mismatches: 30, Indels: 9
0.94 0.05 0.01
Matches are distributed among these distances:
131 121 0.21
132 361 0.61
133 13 0.02
134 7 0.01
135 85 0.14
ACGTcount: A:0.26, C:0.25, G:0.18, T:0.32
Consensus pattern (132 bp):
ATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCATCTTTGATCTGCTCCACTACTGCTTAG
GGAGATAAGATCTACAATCTTCAACCTTCTCCGCTACTGCTCAGAGAGACAAGGCTTTGTGGCTT
AA
Found at i:2359 original size:176 final size:176
Alignment explanation
Indices: 1976--2334 Score: 565
Period size: 176 Copynumber: 2.0 Consensus size: 176
1966 TTTGGCTTAA
* * ** *
1976 ATCTGCTTTCCACTATCTTGGAAATATAAGATTTACCATCTTTGATATGCTCCACTACTGCTTAG
1 ATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGTCGTCTTTGATATGCTCCACTACTGCTTAG
* * * *
2041 GGAGATAAGATCTACAATCCTCAACCTTCTCCGCTGCTGCACAGAGAGACAAGGCTTTATGGCTT
66 GGAGATAAGATCTACAATCCTCAACCTTCTCCGCTACTACACAGAGAGACAAGGCTTGATGGCAT
2106 AAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCATCGTTG
131 AAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCATCGTTG
*
2152 ATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGTCGTCTTTGATCTGCTCCACTACTGCTTAG
1 ATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGTCGTCTTTGATATGCTCCACTACTGCTTAG
* * * *
2217 GGAGATAAGATCTACAATCTTCAACCTTCTCCGCTACTACTCAGGGAGACAAGGCTTGGTGGCAT
66 GGAGATAAGATCTACAATCCTCAACCTTCTCCGCTACTACACAGAGAGACAAGGCTTGATGGCAT
* * *
2282 AAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGTCGTCTTTG
131 AAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCATCGTTG
2328 ATCTGCT
1 ATCTGCT
2335 CCACTACTGC
Statistics
Matches: 166, Mismatches: 17, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
176 166 1.00
ACGTcount: A:0.26, C:0.24, G:0.18, T:0.32
Consensus pattern (176 bp):
ATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGTCGTCTTTGATATGCTCCACTACTGCTTAG
GGAGATAAGATCTACAATCCTCAACCTTCTCCGCTACTACACAGAGAGACAAGGCTTGATGGCAT
AAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCATCGTTG
Found at i:2440 original size:308 final size:305
Alignment explanation
Indices: 1882--2472 Score: 957
Period size: 308 Copynumber: 1.9 Consensus size: 305
1872 NNNNNNNNNA
*
1882 TCTTTGATCTACTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTTCTCCGCTGCT
1 TCTTTGATCTACTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTTCTCCGCTACT
* ** * * *
1947 GCTCAGAGAGACAAGGCTTTTTGGCTTAAATCTGCTTTCCACTATCTTGGAAATATAAGATTTAC
66 ACTCAGAGAGACAAGGCTTGGTGGCATAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTAC
*
2012 CATCTTTGATATGCTCCACTACTGCTTAGGGAGATAAGATCTACAATCCTCAACCTTCTCCGCTG
131 CATCTTTGATATGCTCCACTACTGCTTAGGGAGATAAGATCTACAATCCTCAACCTTCTCCGCTA
* *
2077 CTGCACAGAGAGACAAGGCTTTATGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTT
196 CTACACAGAGAGACAAGCCTTTATGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTT
2142 GCCATCGTTGATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGTCG
261 -CCATCGTTGATCTGC-T-CCACTATCTTGGAAAGATAAGATTTGTCG
*
2190 TCTTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTTCTCCGCTACT
1 TCTTTGATCTACTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTTCTCCGCTACT
* **
2255 ACTCAGGGAGACAAGGCTTGGTGGCATAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGT
66 ACTCAGAGAGACAAGGCTTGGTGGCATAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTAC
* * * *
2320 CGTCTTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCATCCTTCTCCGCTA
131 CATCTTTGATATGCTCCACTACTGCTTAGGGAGATAAGATCTACAATCCTCAACCTTCTCCGCTA
* * *
2385 CTACCCAGAGAGACAAGCCTTTGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATATGATTT
196 CTACACAGAGAGACAAGCCTTTATGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTT
*
2450 CCATCTTTGATCTGCTCCACTAT
261 CCATCGTTGATCTGCTCCACTAT
2473 TGCTTAGGGA
Statistics
Matches: 261, Mismatches: 22, Indels: 3
0.91 0.08 0.01
Matches are distributed among these distances:
305 7 0.03
306 1 0.00
307 14 0.05
308 239 0.92
ACGTcount: A:0.26, C:0.25, G:0.17, T:0.32
Consensus pattern (305 bp):
TCTTTGATCTACTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTTCTCCGCTACT
ACTCAGAGAGACAAGGCTTGGTGGCATAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTAC
CATCTTTGATATGCTCCACTACTGCTTAGGGAGATAAGATCTACAATCCTCAACCTTCTCCGCTA
CTACACAGAGAGACAAGCCTTTATGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTT
CCATCGTTGATCTGCTCCACTATCTTGGAAAGATAAGATTTGTCG
Found at i:2511 original size:263 final size:263
Alignment explanation
Indices: 2152--2906 Score: 1226
Period size: 263 Copynumber: 2.9 Consensus size: 263
2142 GCCATCGTTG
* *
2152 ATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGTCGTCTTTGATCTGCTCCACTACTGCTTAG
1 ATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCATCTTTGATCTGCTCCACTACTGCTTAG
* * * *
2217 GGAGATAAGATCTACAATCTTCAACCTTCTCCGCTACTACTCAGGGAGACAAGGCTTGGTGGCAT
66 GGAGATAAGATCTACAATCTTCAACCTTCTCCGCTGCTGCTCAGAGAGACAAGGCTT-ATGGCAT
* *
2282 AAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGTCGTCTTTGATCTGCTCCACTACTGCTT
130 AAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCATCTTTGATCTGCTCCACTACTGCTT
* *
2347 AGGGAGATAAGATCTACAATCTTCATCCTTCTCCGCTACTACCCAGAGAGACAAGCCTTTGTGGC
195 AGGGAGATAAGATCTACAATCTTCAACCTTCTCCGCTACTACCCAGAGAGACAAGCCTTTCTGGC
2412 TTAA
260 TTAA
* *
2416 ATCTGCTTCCCACTATCTTGGAAAGATATGATTT-CCATCTTTGATCTGCTCCACTATTGCTTAG
1 ATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCATCTTTGATCTGCTCCACTACTGCTTAG
*
2480 GGAGATAAGATCTACAATCTTCAACCTTCTCCGCTGCTGCTCAGAGAGACAAGGCTTTATGGCTT
66 GGAGATAAGATCTACAATCTTCAACCTTCTCCGCTGCTGCTCAGAGAGACAAGGC-TTATGGCAT
*
2545 AAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCATCTTTGATCTGCTCCACTACTGGTT
130 AAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCATCTTTGATCTGCTCCACTACTGCTT
* * * *
2610 AGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTACTGCTCAGAGAGACAAGGCTTTCTGGC
195 AGGGAGATAAGATCTACAATCTTCAACCTTCTCCGCTACTACCCAGAGAGACAAGCCTTTCTGGC
2675 TTAA
260 TTAA
*
2679 ATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCATCTTTGATCTGTTCCACTACTGCTTAG
1 ATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCATCTTTGATCTGCTCCACTACTGCTTAG
* *
2744 GGAGATAAGATCTACAATCTTCAACCATCTCCGCTGCTGCTCAGAGAGACTAAGGTCTTTTGG-A
66 GGAGATAAGATCTACAATCTTCAACCTTCTCCGCTGCTGCTCAGAGAGAC-AAGG-CTTATGGCA
* *
2808 CTTAATCTGTCCTTTCCACTATCTTGGAAAGATAAGATTTGCCATCTTTGATCTGCTCCACTACT
129 -TAAATCTG--CTTCCCACTATCTTGGAAAGATAAGATTTGCCATCTTTGATCTGCTCCACTACT
2873 GCTTAGGGAGATAAGATCTACAATCTTCAACCTT
191 GCTTAGGGAGATAAGATCTACAATCTTCAACCTT
Statistics
Matches: 456, Mismatches: 28, Indels: 11
0.92 0.06 0.02
Matches are distributed among these distances:
263 242 0.53
264 112 0.25
265 16 0.04
266 1 0.00
267 85 0.19
ACGTcount: A:0.26, C:0.25, G:0.18, T:0.32
Consensus pattern (263 bp):
ATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCATCTTTGATCTGCTCCACTACTGCTTAG
GGAGATAAGATCTACAATCTTCAACCTTCTCCGCTGCTGCTCAGAGAGACAAGGCTTATGGCATA
AATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCATCTTTGATCTGCTCCACTACTGCTTA
GGGAGATAAGATCTACAATCTTCAACCTTCTCCGCTACTACCCAGAGAGACAAGCCTTTCTGGCT
TAA
Found at i:2618 original size:44 final size:44
Alignment explanation
Indices: 2131--2889 Score: 181
Period size: 44 Copynumber: 17.2 Consensus size: 44
2121 TATCTTGGAA
* * *
2131 AGATAAGATTTGCCATCGTTGATCTGCTTCCCACTA-T-CTT-GGAA
1 AGATAAGATTTGCCATCTTTAATCTGC-T-CCACTACTGCTTAGG-G
* * *
2175 AGATAAGATTTGTCGTCTTTGATCTGCTCCACTACTGCTTAGGG
1 AGATAAGATTTGCCATCTTTAATCTGCTCCACTACTGCTTAGGG
* * * * * * * * *
2219 AGATAAGATCTACAATCTTCAACCTTCTCCGCTACTACTCAGGG
1 AGATAAGATTTGCCATCTTTAATCTGCTCCACTACTGCTTAGGG
* ** **** * * *
2263 AGACAAGGCTTGGTGGCATAAATCTGCTTCCCACTA-T-CTT-GGAA
1 AGATAAGATTTGCCATCTTTAATCTGC-T-CCACTACTGCTTAGG-G
* * *
2307 AGATAAGATTTGTCGTCTTTGATCTGCTCCACTACTGCTTAGGG
1 AGATAAGATTTGCCATCTTTAATCTGCTCCACTACTGCTTAGGG
* * * * * * * ** *
2351 AGATAAGATCTACAATC-TTCATCCTTCTCCGCTACTACCCAGAG
1 AGATAAGATTTGCCATCTTTAAT-CTGCTCCACTACTGCTTAGGG
* * *** * *
2395 AGACAAGCCTTTG-TGGCTTAAATCTGCTTCCCACTA-T-CTT-GGAA
1 AGATAAG-ATTTGCCATCTTTAATCTGC-T-CCACTACTGCTTAGG-G
* * *
2439 AGATATGATTT-CCATCTTTGATCTGCTCCACTATTGCTTAGGG
1 AGATAAGATTTGCCATCTTTAATCTGCTCCACTACTGCTTAGGG
* * * * * * * * * *
2482 AGATAAGATCTACAATCTTCAACCTTCTCCGCTGCTGCTCAGAG
1 AGATAAGATTTGCCATCTTTAATCTGCTCCACTACTGCTTAGGG
* * * *
2526 AGACAAGGCTTT---ATGGCTTAAATCTGCTTCCCACTA-T-CTT-GGAA
1 AGATAA-GATTTGCCAT--CTTTAATCTGC-T-CCACTACTGCTTAGG-G
* *
2570 AGATAAGATTTGCCATCTTTGATCTGCTCCACTACTGGTTAGGG
1 AGATAAGATTTGCCATCTTTAATCTGCTCCACTACTGCTTAGGG
* * * * * * * * *
2614 AGATAAGATCTACAATCTTCAACCTACTCCGCTACTGCTCAGAG
1 AGATAAGATTTGCCATCTTTAATCTGCTCCACTACTGCTTAGGG
* * *** * *
2658 AGACAAGGCTTT-CTGGCTTAAATCTGCTTCCCACTA-T-CTT-GGAA
1 AGATAA-GATTTGCCATCTTTAATCTGC-T-CCACTACTGCTTAGG-G
* *
2702 AGATAAGATTTGCCATCTTTGATCTGTTCCACTACTGCTTAGGG
1 AGATAAGATTTGCCATCTTTAATCTGCTCCACTACTGCTTAGGG
* * * * * * * * *
2746 AGATAAGATCTACAATCTTCAACCAT-CTCCGCTGCTGCTCAGAG
1 AGATAAGATTTGCCATCTTTAATC-TGCTCCACTACTGCTTAGGG
* * *
2790 AGACTAAGGTCTTTTG-GA-C-TTAATCTGTCCTTTCCACTA-T-CTT-GGAA
1 AGA-TAA-G--ATTTGCCATCTTTAATCTG--C--TCCACTACTGCTTAGG-G
*
2837 AGATAAGATTTGCCATCTTTGATCTGCTCCACTACTGCTTAGGG
1 AGATAAGATTTGCCATCTTTAATCTGCTCCACTACTGCTTAGGG
2881 AGATAAGAT
1 AGATAAGAT
2890 CTACAATCTT
Statistics
Matches: 492, Mismatches: 166, Indels: 114
0.64 0.22 0.15
Matches are distributed among these distances:
41 6 0.01
42 35 0.07
43 54 0.11
44 309 0.63
45 39 0.08
46 34 0.07
47 7 0.01
48 3 0.01
49 5 0.01
ACGTcount: A:0.26, C:0.24, G:0.18, T:0.32
Consensus pattern (44 bp):
AGATAAGATTTGCCATCTTTAATCTGCTCCACTACTGCTTAGGG
Done.